Query 008925
Match_columns 548
No_of_seqs 790 out of 3553
Neff 11.5
Searched_HMMs 46136
Date Thu Mar 28 18:17:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.2E-70 4.8E-75 574.9 44.6 503 1-524 229-751 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.3E-66 2.8E-71 533.7 46.2 483 4-523 97-587 (697)
3 PLN03218 maturation of RBCL 1; 100.0 6.5E-63 1.4E-67 508.2 59.8 491 2-500 378-910 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 6.5E-61 1.4E-65 493.4 57.8 435 3-442 415-874 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 1.8E-58 3.9E-63 485.0 46.0 481 2-500 129-687 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.8E-57 3.9E-62 466.3 45.5 438 27-500 85-524 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.5E-32 9.7E-37 292.3 57.7 483 3-500 372-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-31 3.4E-36 288.1 57.1 483 3-500 338-833 (899)
9 KOG4626 O-linked N-acetylgluco 100.0 1.3E-26 2.8E-31 212.5 34.6 428 5-449 59-490 (966)
10 PRK11447 cellulose synthase su 100.0 1.3E-24 2.7E-29 234.7 54.2 482 3-498 121-739 (1157)
11 PRK11447 cellulose synthase su 100.0 5.3E-24 1.1E-28 229.9 55.9 486 4-499 38-700 (1157)
12 KOG4626 O-linked N-acetylgluco 100.0 6.4E-25 1.4E-29 201.4 35.4 406 4-426 92-501 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 7.2E-22 1.6E-26 200.5 52.3 259 183-447 307-574 (615)
14 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-21 4.6E-26 197.1 52.7 256 149-409 308-571 (615)
15 PRK09782 bacteriophage N4 rece 99.9 1.5E-21 3.3E-26 201.5 49.8 476 5-500 55-707 (987)
16 PRK15174 Vi polysaccharide exp 99.9 6.4E-21 1.4E-25 192.8 45.9 360 39-409 15-381 (656)
17 PRK15174 Vi polysaccharide exp 99.9 2E-20 4.3E-25 189.2 48.2 391 3-406 14-417 (656)
18 PRK11788 tetratricopeptide rep 99.9 8.3E-22 1.8E-26 190.3 35.9 296 73-375 44-348 (389)
19 PRK10049 pgaA outer membrane p 99.9 7.6E-20 1.6E-24 189.1 50.4 408 28-449 14-461 (765)
20 PRK11788 tetratricopeptide rep 99.9 2.5E-21 5.4E-26 187.0 36.0 302 107-416 43-354 (389)
21 PRK10049 pgaA outer membrane p 99.9 1.5E-19 3.3E-24 186.8 48.6 409 3-425 24-470 (765)
22 PRK14574 hmsH outer membrane p 99.9 9.9E-19 2.1E-23 177.1 50.7 435 4-449 44-518 (822)
23 PRK09782 bacteriophage N4 rece 99.9 1.3E-18 2.9E-23 179.8 50.5 235 204-449 476-711 (987)
24 KOG2002 TPR-containing nuclear 99.9 1.9E-19 4E-24 174.4 40.7 437 4-449 280-750 (1018)
25 PRK14574 hmsH outer membrane p 99.9 6.4E-18 1.4E-22 171.3 48.0 439 30-500 35-514 (822)
26 KOG2002 TPR-containing nuclear 99.9 1.6E-18 3.4E-23 168.1 38.4 405 28-443 269-708 (1018)
27 KOG2003 TPR repeat-containing 99.8 1.9E-17 4.2E-22 147.3 30.2 417 3-430 246-709 (840)
28 KOG0495 HAT repeat protein [RN 99.8 4.2E-15 9.1E-20 138.4 44.6 417 59-511 474-895 (913)
29 KOG1915 Cell cycle control pro 99.8 1.1E-14 2.5E-19 130.6 43.6 430 6-448 85-540 (677)
30 KOG2003 TPR repeat-containing 99.8 7.2E-16 1.6E-20 137.5 33.0 391 3-405 285-718 (840)
31 KOG2076 RNA polymerase III tra 99.8 1.8E-14 3.9E-19 139.5 44.2 434 4-444 149-695 (895)
32 KOG0495 HAT repeat protein [RN 99.8 3.4E-14 7.4E-19 132.5 44.4 474 15-508 367-858 (913)
33 KOG0547 Translocase of outer m 99.8 3.8E-15 8.3E-20 134.2 32.4 413 3-442 124-564 (606)
34 KOG1155 Anaphase-promoting com 99.8 5.1E-14 1.1E-18 126.2 38.0 367 60-442 160-534 (559)
35 KOG2076 RNA polymerase III tra 99.8 5.7E-14 1.2E-18 136.0 40.8 388 39-442 149-553 (895)
36 KOG4422 Uncharacterized conser 99.8 3.2E-13 6.9E-18 120.0 40.4 305 30-340 117-463 (625)
37 KOG1155 Anaphase-promoting com 99.7 8.7E-14 1.9E-18 124.8 36.6 368 95-494 160-531 (559)
38 KOG4422 Uncharacterized conser 99.7 6E-13 1.3E-17 118.3 41.2 379 65-456 117-563 (625)
39 TIGR00540 hemY_coli hemY prote 99.7 2.7E-14 5.8E-19 137.3 36.2 290 146-442 95-397 (409)
40 PRK10747 putative protoheme IX 99.7 5.4E-14 1.2E-18 134.4 37.2 285 148-442 97-388 (398)
41 PF13429 TPR_15: Tetratricopep 99.7 3.5E-17 7.6E-22 149.5 12.3 262 34-303 13-276 (280)
42 PF13429 TPR_15: Tetratricopep 99.7 2.2E-17 4.7E-22 150.9 9.9 259 175-441 13-274 (280)
43 KOG1126 DNA-binding cell divis 99.7 4.2E-15 9.2E-20 139.3 24.9 287 150-448 334-624 (638)
44 PRK10747 putative protoheme IX 99.7 1.5E-13 3.3E-18 131.3 35.0 283 112-408 97-389 (398)
45 KOG1915 Cell cycle control pro 99.7 5.5E-12 1.2E-16 113.7 41.5 444 32-509 76-548 (677)
46 TIGR00540 hemY_coli hemY prote 99.7 1.8E-13 3.8E-18 131.7 34.7 288 111-407 96-397 (409)
47 KOG1126 DNA-binding cell divis 99.7 1.3E-14 2.9E-19 136.0 23.8 289 44-344 334-625 (638)
48 COG2956 Predicted N-acetylgluc 99.7 6.7E-13 1.4E-17 113.8 30.5 290 77-373 48-346 (389)
49 KOG0547 Translocase of outer m 99.7 2.1E-13 4.5E-18 123.2 27.9 420 31-496 117-563 (606)
50 COG3071 HemY Uncharacterized e 99.7 3.7E-12 8.1E-17 112.7 34.3 285 148-442 97-388 (400)
51 COG2956 Predicted N-acetylgluc 99.7 1.7E-12 3.6E-17 111.4 30.7 288 148-442 48-345 (389)
52 KOG1173 Anaphase-promoting com 99.6 4.6E-12 9.9E-17 116.9 35.0 275 167-447 241-521 (611)
53 COG3071 HemY Uncharacterized e 99.6 7.4E-12 1.6E-16 110.9 33.6 291 112-413 97-394 (400)
54 KOG3785 Uncharacterized conser 99.6 3.2E-11 7E-16 104.8 35.0 420 4-450 32-498 (557)
55 KOG4162 Predicted calmodulin-b 99.6 2.3E-10 5E-15 109.7 43.9 388 59-451 318-790 (799)
56 KOG1173 Anaphase-promoting com 99.6 6.5E-12 1.4E-16 115.9 31.2 439 28-500 15-519 (611)
57 KOG1156 N-terminal acetyltrans 99.6 2.4E-10 5.2E-15 107.4 40.9 428 6-447 19-514 (700)
58 KOG1156 N-terminal acetyltrans 99.6 8.2E-11 1.8E-15 110.5 36.7 432 31-493 10-505 (700)
59 TIGR02521 type_IV_pilW type IV 99.5 1.7E-11 3.6E-16 109.5 27.0 198 30-231 32-229 (234)
60 KOG1174 Anaphase-promoting com 99.5 1.8E-09 3.9E-14 96.2 38.2 294 145-447 206-503 (564)
61 KOG1129 TPR repeat-containing 99.5 6E-12 1.3E-16 108.1 21.8 234 209-448 227-462 (478)
62 TIGR02521 type_IV_pilW type IV 99.5 2.2E-11 4.7E-16 108.7 27.0 199 240-442 31-230 (234)
63 PRK12370 invasion protein regu 99.5 1.7E-11 3.6E-16 122.7 28.1 268 27-305 254-536 (553)
64 PRK12370 invasion protein regu 99.5 5.7E-11 1.2E-15 118.9 31.3 149 221-373 320-469 (553)
65 KOG1129 TPR repeat-containing 99.5 4.5E-12 9.7E-17 108.9 19.6 264 144-415 188-462 (478)
66 KOG2047 mRNA splicing factor [ 99.5 3.1E-09 6.6E-14 99.9 39.5 428 3-442 178-685 (835)
67 KOG2047 mRNA splicing factor [ 99.5 5.1E-09 1.1E-13 98.5 40.0 479 4-496 112-684 (835)
68 KOG3785 Uncharacterized conser 99.5 2E-09 4.3E-14 94.0 34.2 388 36-443 29-456 (557)
69 KOG2376 Signal recognition par 99.5 9.1E-09 2E-13 96.0 39.1 418 2-441 20-517 (652)
70 PF12569 NARP1: NMDA receptor- 99.4 1.1E-08 2.3E-13 99.1 41.0 93 210-304 199-291 (517)
71 KOG4162 Predicted calmodulin-b 99.4 2.2E-09 4.9E-14 103.1 35.6 129 277-409 652-783 (799)
72 KOG4340 Uncharacterized conser 99.4 9E-10 1.9E-14 93.8 28.7 322 3-337 19-373 (459)
73 KOG1840 Kinesin light chain [C 99.4 9.1E-11 2E-15 111.7 24.4 167 276-442 284-477 (508)
74 COG3063 PilF Tfp pilus assembl 99.4 2.6E-10 5.7E-15 93.7 23.4 201 242-446 37-238 (250)
75 COG3063 PilF Tfp pilus assembl 99.4 5.6E-10 1.2E-14 91.8 24.8 199 31-233 37-235 (250)
76 KOG1174 Anaphase-promoting com 99.4 1E-08 2.2E-13 91.5 33.2 302 109-421 206-511 (564)
77 KOG0548 Molecular co-chaperone 99.4 1.9E-09 4.1E-14 99.5 29.5 104 2-109 10-114 (539)
78 PF12569 NARP1: NMDA receptor- 99.4 3.4E-09 7.3E-14 102.5 32.8 135 237-373 189-333 (517)
79 KOG4318 Bicoid mRNA stability 99.4 2.3E-09 4.9E-14 104.5 31.1 414 15-443 11-556 (1088)
80 KOG1840 Kinesin light chain [C 99.4 3E-10 6.6E-15 108.2 24.4 238 169-406 198-476 (508)
81 PRK11189 lipoprotein NlpI; Pro 99.4 1.1E-09 2.5E-14 100.2 26.5 218 8-235 40-266 (296)
82 PRK11189 lipoprotein NlpI; Pro 99.3 1.6E-09 3.4E-14 99.3 26.5 95 208-304 67-161 (296)
83 KOG4318 Bicoid mRNA stability 99.3 1.7E-09 3.6E-14 105.4 27.1 275 50-360 11-286 (1088)
84 KOG0548 Molecular co-chaperone 99.3 1.4E-08 3.1E-13 93.8 30.2 390 36-447 9-458 (539)
85 KOG2376 Signal recognition par 99.3 6.8E-07 1.5E-11 83.9 40.2 395 32-447 15-490 (652)
86 cd05804 StaR_like StaR_like; a 99.2 2.4E-07 5.2E-12 88.4 36.6 201 29-233 6-214 (355)
87 cd05804 StaR_like StaR_like; a 99.2 1.7E-07 3.7E-12 89.4 35.3 89 212-301 121-212 (355)
88 KOG3616 Selective LIM binding 99.2 4.2E-08 9E-13 93.9 29.0 297 179-523 741-1054(1636)
89 KOG0624 dsRNA-activated protei 99.2 2E-07 4.3E-12 81.4 30.0 316 100-448 39-374 (504)
90 KOG1125 TPR repeat-containing 99.2 3E-09 6.6E-14 99.1 20.4 97 168-267 428-525 (579)
91 KOG1125 TPR repeat-containing 99.2 3.3E-09 7.1E-14 98.8 19.6 232 212-449 292-532 (579)
92 KOG1127 TPR repeat-containing 99.2 9E-08 1.9E-12 94.8 30.3 423 9-441 473-949 (1238)
93 KOG0624 dsRNA-activated protei 99.2 5.9E-07 1.3E-11 78.6 31.8 304 28-339 37-370 (504)
94 PF13041 PPR_2: PPR repeat fam 99.2 8.4E-11 1.8E-15 75.0 6.5 49 343-391 1-49 (50)
95 KOG4340 Uncharacterized conser 99.2 1.1E-07 2.5E-12 81.3 26.9 327 32-372 13-373 (459)
96 PF13041 PPR_2: PPR repeat fam 99.2 1.3E-10 2.7E-15 74.2 6.8 49 62-110 1-49 (50)
97 PRK04841 transcriptional regul 99.2 6.8E-07 1.5E-11 96.6 39.6 338 107-445 382-761 (903)
98 PRK04841 transcriptional regul 99.1 6.2E-07 1.3E-11 96.9 37.9 372 33-410 345-761 (903)
99 PF04733 Coatomer_E: Coatomer 99.1 5.8E-09 1.3E-13 94.0 17.7 151 285-446 112-267 (290)
100 KOG0985 Vesicle coat protein c 99.1 1E-06 2.2E-11 87.7 33.4 391 7-442 851-1306(1666)
101 KOG3617 WD40 and TPR repeat-co 99.1 2E-06 4.3E-11 83.9 34.7 384 3-441 737-1171(1416)
102 KOG1914 mRNA cleavage and poly 99.1 9.3E-06 2E-10 75.7 41.1 421 19-446 11-503 (656)
103 PF04733 Coatomer_E: Coatomer 99.1 1.1E-08 2.5E-13 92.1 18.8 252 147-416 13-270 (290)
104 KOG1127 TPR repeat-containing 99.1 6.7E-07 1.4E-11 88.9 30.1 385 44-440 473-909 (1238)
105 PLN02789 farnesyltranstransfer 99.0 4.7E-07 1E-11 82.8 27.0 204 218-427 50-267 (320)
106 PLN02789 farnesyltranstransfer 99.0 1.1E-06 2.4E-11 80.4 26.8 203 184-392 51-267 (320)
107 KOG1070 rRNA processing protei 99.0 9.4E-07 2E-11 90.9 27.3 199 30-236 1459-1665(1710)
108 KOG1128 Uncharacterized conser 98.9 3.4E-07 7.3E-12 88.1 21.8 215 172-408 400-615 (777)
109 KOG1128 Uncharacterized conser 98.9 1.2E-06 2.6E-11 84.4 24.6 222 132-374 395-616 (777)
110 KOG3616 Selective LIM binding 98.9 9.5E-06 2.1E-10 78.3 29.0 383 7-442 745-1182(1636)
111 KOG3617 WD40 and TPR repeat-co 98.9 2.4E-06 5.3E-11 83.2 25.3 336 63-442 725-1107(1416)
112 COG5010 TadD Flp pilus assembl 98.9 9.6E-07 2.1E-11 74.8 19.8 158 279-440 70-227 (257)
113 TIGR03302 OM_YfiO outer membra 98.9 1E-06 2.2E-11 78.5 21.6 186 238-444 31-232 (235)
114 PRK10370 formate-dependent nit 98.8 1.2E-06 2.5E-11 74.7 20.0 119 288-409 52-173 (198)
115 KOG1070 rRNA processing protei 98.8 4.7E-06 1E-10 85.9 27.0 207 61-273 1455-1667(1710)
116 COG5010 TadD Flp pilus assembl 98.8 2.4E-06 5.2E-11 72.4 20.7 163 239-406 66-228 (257)
117 KOG0985 Vesicle coat protein c 98.8 6.5E-05 1.4E-09 75.4 33.3 358 28-440 983-1366(1666)
118 PRK15359 type III secretion sy 98.7 9.4E-07 2E-11 71.1 15.9 92 315-408 29-120 (144)
119 TIGR03302 OM_YfiO outer membra 98.7 3.6E-06 7.8E-11 74.9 21.3 185 28-234 32-232 (235)
120 PRK10370 formate-dependent nit 98.7 4E-06 8.6E-11 71.5 20.2 123 254-380 53-178 (198)
121 KOG3081 Vesicle coat complex C 98.7 3.6E-05 7.9E-10 65.4 24.5 159 280-449 113-276 (299)
122 PRK15179 Vi polysaccharide bio 98.7 1.1E-05 2.3E-10 81.8 25.4 146 237-386 83-228 (694)
123 PRK15359 type III secretion sy 98.7 1.2E-06 2.7E-11 70.4 15.3 124 260-390 13-136 (144)
124 KOG3081 Vesicle coat complex C 98.7 4.4E-05 9.6E-10 64.9 24.4 239 36-292 15-258 (299)
125 PRK15179 Vi polysaccharide bio 98.7 1.6E-05 3.5E-10 80.5 25.9 132 63-198 85-216 (694)
126 PRK14720 transcript cleavage f 98.7 1.7E-05 3.6E-10 81.2 25.6 239 132-426 28-268 (906)
127 PRK14720 transcript cleavage f 98.6 2.7E-05 5.9E-10 79.7 25.5 237 28-321 30-268 (906)
128 KOG3060 Uncharacterized conser 98.6 7E-05 1.5E-09 63.2 23.4 188 43-235 26-221 (289)
129 KOG3060 Uncharacterized conser 98.6 3.9E-05 8.5E-10 64.7 21.8 164 278-446 55-222 (289)
130 TIGR02552 LcrH_SycD type III s 98.6 2.7E-06 5.8E-11 68.2 14.9 96 311-408 18-113 (135)
131 COG4783 Putative Zn-dependent 98.5 2.9E-05 6.2E-10 71.9 20.6 156 316-513 312-471 (484)
132 TIGR02552 LcrH_SycD type III s 98.5 4.3E-06 9.3E-11 67.0 13.8 113 332-448 5-118 (135)
133 PF12854 PPR_1: PPR repeat 98.5 1.8E-07 3.8E-12 53.4 3.9 32 340-371 2-33 (34)
134 KOG2053 Mitochondrial inherita 98.5 0.0019 4.1E-08 64.6 43.8 224 4-235 19-256 (932)
135 PF12854 PPR_1: PPR repeat 98.5 2.3E-07 5.1E-12 52.8 4.1 31 60-90 3-33 (34)
136 KOG1914 mRNA cleavage and poly 98.5 0.0015 3.2E-08 61.6 38.6 414 6-430 31-525 (656)
137 COG4783 Putative Zn-dependent 98.4 0.00016 3.6E-09 67.1 23.0 116 248-366 314-429 (484)
138 KOG0550 Molecular chaperone (D 98.4 0.00056 1.2E-08 62.1 24.8 277 34-338 54-349 (486)
139 PF09976 TPR_21: Tetratricopep 98.4 3E-05 6.6E-10 62.7 15.0 125 312-441 14-144 (145)
140 PF09976 TPR_21: Tetratricopep 98.3 5.3E-05 1.2E-09 61.3 15.3 126 277-406 14-144 (145)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.6E-05 7.8E-10 72.0 15.9 124 312-442 171-295 (395)
142 KOG2041 WD40 repeat protein [G 98.2 0.0038 8.2E-08 60.7 28.1 205 26-265 689-903 (1189)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.9E-05 1.5E-09 70.2 15.9 124 102-232 172-295 (395)
144 KOG0550 Molecular chaperone (D 98.2 0.0015 3.2E-08 59.5 23.1 279 69-375 54-351 (486)
145 KOG2053 Mitochondrial inherita 98.2 0.0097 2.1E-07 59.9 43.9 194 4-201 53-257 (932)
146 cd00189 TPR Tetratricopeptide 98.2 4.2E-05 9.2E-10 56.7 11.4 93 349-443 4-96 (100)
147 PRK15363 pathogenicity island 98.1 0.00013 2.8E-09 57.8 12.8 97 347-445 37-133 (157)
148 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00011 2.3E-09 57.3 12.8 95 349-444 6-105 (119)
149 PRK15363 pathogenicity island 98.1 0.00029 6.3E-09 55.9 14.5 97 310-408 35-131 (157)
150 KOG0553 TPR repeat-containing 98.1 7.2E-05 1.6E-09 65.0 11.9 98 317-418 88-185 (304)
151 PF12895 Apc3: Anaphase-promot 98.0 1.3E-05 2.9E-10 57.7 5.9 81 358-441 2-84 (84)
152 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.0003 6.4E-09 54.8 13.8 93 314-408 6-104 (119)
153 PF12895 Apc3: Anaphase-promot 98.0 1.3E-05 2.8E-10 57.8 5.3 81 7-89 2-83 (84)
154 KOG1130 Predicted G-alpha GTPa 98.0 6.4E-05 1.4E-09 67.9 10.4 261 4-265 27-340 (639)
155 cd00189 TPR Tetratricopeptide 98.0 0.00014 3.1E-09 53.7 11.2 94 313-408 3-96 (100)
156 PLN03088 SGT1, suppressor of 98.0 0.00029 6.2E-09 66.4 15.2 90 283-374 10-99 (356)
157 KOG1130 Predicted G-alpha GTPa 98.0 0.00012 2.6E-09 66.1 11.6 132 277-408 197-343 (639)
158 COG4700 Uncharacterized protei 97.9 0.0041 8.9E-08 50.2 18.4 131 307-441 86-219 (251)
159 PF07079 DUF1347: Protein of u 97.9 0.019 4.2E-07 53.3 37.1 425 4-442 16-522 (549)
160 PF14938 SNAP: Soluble NSF att 97.9 0.0048 1E-07 56.3 21.4 92 142-234 121-225 (282)
161 PLN03088 SGT1, suppressor of 97.9 0.00056 1.2E-08 64.5 15.7 92 246-339 8-99 (356)
162 PRK02603 photosystem I assembl 97.9 0.00093 2E-08 55.9 15.6 83 312-395 37-121 (172)
163 PRK10153 DNA-binding transcrip 97.9 0.0011 2.3E-08 65.4 18.1 69 379-449 419-487 (517)
164 PRK10153 DNA-binding transcrip 97.9 0.0013 2.7E-08 65.0 18.5 145 270-419 332-490 (517)
165 CHL00033 ycf3 photosystem I as 97.9 0.0004 8.6E-09 57.9 12.9 79 312-391 37-117 (168)
166 KOG0553 TPR repeat-containing 97.9 0.00029 6.2E-09 61.4 12.0 97 284-385 90-187 (304)
167 PF14938 SNAP: Soluble NSF att 97.9 0.002 4.4E-08 58.8 18.4 179 281-462 41-243 (282)
168 PRK02603 photosystem I assembl 97.9 0.0013 2.9E-08 54.9 15.8 83 137-220 37-121 (172)
169 COG4700 Uncharacterized protei 97.9 0.0083 1.8E-07 48.5 18.8 130 96-228 86-216 (251)
170 TIGR00756 PPR pentatricopeptid 97.8 3.2E-05 6.9E-10 44.8 4.3 32 348-379 3-34 (35)
171 COG4235 Cytochrome c biogenesi 97.8 0.0013 2.9E-08 57.7 15.4 101 307-409 153-256 (287)
172 PF05843 Suf: Suppressor of fo 97.8 0.00029 6.3E-09 63.9 12.0 129 277-408 3-135 (280)
173 TIGR00756 PPR pentatricopeptid 97.8 4.1E-05 8.9E-10 44.3 4.3 33 382-414 2-34 (35)
174 PF13812 PPR_3: Pentatricopept 97.8 4.4E-05 9.6E-10 43.8 4.3 32 382-413 3-34 (34)
175 PF05843 Suf: Suppressor of fo 97.8 0.00055 1.2E-08 62.1 13.4 133 30-164 2-136 (280)
176 PRK10866 outer membrane biogen 97.8 0.024 5.3E-07 50.1 23.2 58 70-129 38-99 (243)
177 COG3898 Uncharacterized membra 97.8 0.03 6.5E-07 51.0 28.6 306 10-339 69-392 (531)
178 PF13812 PPR_3: Pentatricopept 97.8 6.1E-05 1.3E-09 43.2 4.4 32 66-97 3-34 (34)
179 PF13414 TPR_11: TPR repeat; P 97.8 0.00015 3.2E-09 49.9 7.1 64 380-445 3-68 (69)
180 PF10037 MRP-S27: Mitochondria 97.8 0.00067 1.5E-08 64.0 13.5 124 95-218 62-186 (429)
181 PF13432 TPR_16: Tetratricopep 97.7 0.00015 3.3E-09 49.1 6.9 60 386-447 3-63 (65)
182 PRK10866 outer membrane biogen 97.7 0.0055 1.2E-07 54.2 18.3 184 28-232 31-239 (243)
183 CHL00033 ycf3 photosystem I as 97.7 0.0013 2.8E-08 54.8 13.5 62 137-198 37-100 (168)
184 PF10037 MRP-S27: Mitochondria 97.7 0.00065 1.4E-08 64.1 12.7 124 235-358 61-186 (429)
185 PF13414 TPR_11: TPR repeat; P 97.7 0.00019 4.1E-09 49.4 6.8 63 345-408 3-66 (69)
186 KOG2041 WD40 repeat protein [G 97.7 0.066 1.4E-06 52.6 26.4 337 61-439 689-1084(1189)
187 PF14559 TPR_19: Tetratricopep 97.7 0.00014 3.1E-09 49.9 5.8 53 5-58 2-54 (68)
188 PF08579 RPM2: Mitochondrial r 97.7 0.001 2.2E-08 48.9 10.1 81 31-111 27-116 (120)
189 PF12688 TPR_5: Tetratrico pep 97.7 0.004 8.6E-08 47.7 14.0 90 34-125 6-101 (120)
190 PF12688 TPR_5: Tetratrico pep 97.6 0.0044 9.5E-08 47.5 14.1 55 319-373 10-66 (120)
191 COG3898 Uncharacterized membra 97.6 0.049 1.1E-06 49.7 32.1 277 148-442 97-390 (531)
192 COG4235 Cytochrome c biogenesi 97.6 0.0039 8.3E-08 54.9 15.0 101 273-375 154-257 (287)
193 PF13432 TPR_16: Tetratricopep 97.6 0.00031 6.6E-09 47.6 6.4 55 353-408 5-59 (65)
194 PF14559 TPR_19: Tetratricopep 97.5 0.00057 1.2E-08 46.8 6.8 52 41-93 3-54 (68)
195 PF08579 RPM2: Mitochondrial r 97.5 0.00094 2E-08 49.1 7.8 75 2-76 33-116 (120)
196 PF01535 PPR: PPR repeat; Int 97.4 0.00018 3.9E-09 40.1 3.3 26 348-373 3-28 (31)
197 PRK10803 tol-pal system protei 97.4 0.0041 8.9E-08 55.4 13.2 97 348-446 146-248 (263)
198 PF01535 PPR: PPR repeat; Int 97.4 0.00019 4E-09 40.1 3.1 28 66-93 2-29 (31)
199 PF13525 YfiO: Outer membrane 97.4 0.025 5.5E-07 48.6 17.1 173 30-224 6-197 (203)
200 PRK15331 chaperone protein Sic 97.4 0.016 3.4E-07 46.5 14.2 87 320-408 47-133 (165)
201 PF13525 YfiO: Outer membrane 97.3 0.026 5.6E-07 48.6 16.9 173 67-259 8-197 (203)
202 KOG2796 Uncharacterized conser 97.3 0.012 2.7E-07 50.4 14.1 150 44-201 164-317 (366)
203 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.14 3E-06 47.8 36.9 412 21-445 35-532 (660)
204 PF04840 Vps16_C: Vps16, C-ter 97.3 0.13 2.9E-06 47.4 28.7 22 32-53 3-24 (319)
205 PF03704 BTAD: Bacterial trans 97.3 0.013 2.7E-07 47.5 13.9 73 347-420 64-141 (146)
206 PF06239 ECSIT: Evolutionarily 97.3 0.0091 2E-07 50.0 12.6 31 362-392 120-150 (228)
207 PF06239 ECSIT: Evolutionarily 97.3 0.0093 2E-07 49.9 12.5 88 26-113 44-152 (228)
208 PF13281 DUF4071: Domain of un 97.3 0.058 1.3E-06 50.1 18.9 181 242-450 143-340 (374)
209 PRK15331 chaperone protein Sic 97.2 0.013 2.9E-07 46.9 12.6 91 351-443 43-133 (165)
210 PF13371 TPR_9: Tetratricopept 97.1 0.0033 7.2E-08 43.7 7.7 53 355-408 5-57 (73)
211 PRK10803 tol-pal system protei 97.1 0.019 4.2E-07 51.2 14.1 94 313-408 146-245 (263)
212 KOG1941 Acetylcholine receptor 97.1 0.021 4.5E-07 51.4 13.7 166 241-407 84-273 (518)
213 PRK11906 transcriptional regul 97.1 0.04 8.8E-07 52.0 16.0 145 290-440 273-432 (458)
214 PF13424 TPR_12: Tetratricopep 97.1 0.0015 3.2E-08 46.2 5.3 63 381-443 6-74 (78)
215 PF07079 DUF1347: Protein of u 97.1 0.28 6.1E-06 46.0 40.4 376 32-420 80-530 (549)
216 KOG1941 Acetylcholine receptor 97.0 0.022 4.9E-07 51.2 13.3 168 276-443 84-274 (518)
217 PF13371 TPR_9: Tetratricopept 97.0 0.003 6.5E-08 43.9 6.6 59 387-446 2-60 (73)
218 KOG2796 Uncharacterized conser 96.9 0.25 5.3E-06 42.8 24.1 138 277-417 179-321 (366)
219 PF13424 TPR_12: Tetratricopep 96.9 0.003 6.4E-08 44.6 5.5 61 347-407 7-73 (78)
220 PF04184 ST7: ST7 protein; In 96.8 0.16 3.5E-06 48.2 17.6 100 349-449 263-380 (539)
221 KOG1258 mRNA processing protei 96.8 0.58 1.3E-05 45.7 31.8 375 11-394 62-489 (577)
222 COG3118 Thioredoxin domain-con 96.8 0.096 2.1E-06 46.2 14.8 155 35-193 140-295 (304)
223 PF13281 DUF4071: Domain of un 96.8 0.48 1E-05 44.2 20.8 82 205-286 141-228 (374)
224 PF03704 BTAD: Bacterial trans 96.7 0.02 4.4E-07 46.3 10.4 71 66-137 64-138 (146)
225 KOG2280 Vacuolar assembly/sort 96.7 0.74 1.6E-05 46.1 26.4 109 313-440 687-795 (829)
226 KOG1538 Uncharacterized conser 96.7 0.12 2.7E-06 50.3 16.5 89 274-373 746-845 (1081)
227 KOG0543 FKBP-type peptidyl-pro 96.7 0.019 4.1E-07 52.8 10.6 91 2-93 216-320 (397)
228 KOG0543 FKBP-type peptidyl-pro 96.6 0.041 9E-07 50.6 12.2 138 282-443 215-354 (397)
229 COG3118 Thioredoxin domain-con 96.6 0.31 6.8E-06 43.1 17.0 153 284-439 143-296 (304)
230 COG1729 Uncharacterized protei 96.6 0.026 5.6E-07 49.2 10.5 101 347-449 144-249 (262)
231 COG0457 NrfG FOG: TPR repeat [ 96.6 0.45 9.7E-06 41.9 29.4 202 241-446 60-267 (291)
232 KOG1585 Protein required for f 96.6 0.39 8.5E-06 41.1 17.4 206 30-263 32-250 (308)
233 PRK11906 transcriptional regul 96.6 0.096 2.1E-06 49.6 14.6 120 325-447 273-404 (458)
234 KOG1258 mRNA processing protei 96.6 0.85 1.8E-05 44.6 34.0 135 28-164 44-180 (577)
235 PRK15180 Vi polysaccharide bio 96.5 0.74 1.6E-05 43.6 27.0 120 6-128 301-420 (831)
236 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.056 1.2E-06 51.0 12.6 66 307-374 72-141 (453)
237 KOG1585 Protein required for f 96.5 0.23 5E-06 42.5 14.7 166 44-228 73-250 (308)
238 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.016 3.6E-07 54.5 9.0 65 343-409 73-141 (453)
239 PF10300 DUF3808: Protein of u 96.5 0.32 7E-06 47.9 18.4 115 150-267 248-374 (468)
240 PF10300 DUF3808: Protein of u 96.5 0.19 4.1E-06 49.4 16.7 167 278-447 191-379 (468)
241 COG4649 Uncharacterized protei 96.4 0.36 7.8E-06 38.9 15.3 124 40-164 69-196 (221)
242 COG1729 Uncharacterized protei 96.4 0.05 1.1E-06 47.5 10.9 96 31-128 144-244 (262)
243 KOG4555 TPR repeat-containing 96.4 0.054 1.2E-06 41.1 9.5 91 36-127 50-143 (175)
244 KOG1538 Uncharacterized conser 96.4 0.77 1.7E-05 45.2 19.2 87 242-339 749-846 (1081)
245 COG4785 NlpI Lipoprotein NlpI, 96.2 0.059 1.3E-06 44.9 9.4 195 284-504 74-271 (297)
246 KOG4555 TPR repeat-containing 96.2 0.13 2.9E-06 39.1 10.4 91 354-445 52-145 (175)
247 KOG2114 Vacuolar assembly/sort 96.1 1.9 4E-05 44.1 22.7 172 3-196 343-516 (933)
248 PF12921 ATP13: Mitochondrial 96.1 0.086 1.9E-06 40.9 9.9 48 96-143 49-96 (126)
249 PF12921 ATP13: Mitochondrial 96.0 0.17 3.8E-06 39.2 11.0 51 341-391 48-99 (126)
250 KOG2280 Vacuolar assembly/sort 95.6 2.9 6.3E-05 42.2 27.1 342 73-442 398-771 (829)
251 KOG2610 Uncharacterized conser 95.6 0.43 9.3E-06 42.9 12.9 154 39-195 113-272 (491)
252 PF04184 ST7: ST7 protein; In 95.6 2.1 4.5E-05 41.1 18.0 59 139-197 263-322 (539)
253 COG0457 NrfG FOG: TPR repeat [ 95.6 1.5 3.2E-05 38.5 30.0 201 206-409 60-265 (291)
254 PF13512 TPR_18: Tetratricopep 95.5 0.46 9.9E-06 37.4 11.5 84 28-112 9-95 (142)
255 PF13428 TPR_14: Tetratricopep 95.5 0.043 9.4E-07 33.3 4.9 22 352-373 8-29 (44)
256 PF04053 Coatomer_WDAD: Coatom 95.5 0.37 8E-06 46.7 13.5 28 204-231 346-373 (443)
257 KOG2610 Uncharacterized conser 95.5 0.84 1.8E-05 41.1 14.1 155 74-232 113-274 (491)
258 PF04053 Coatomer_WDAD: Coatom 95.4 0.6 1.3E-05 45.3 14.7 133 275-440 295-427 (443)
259 PF13512 TPR_18: Tetratricopep 95.4 1 2.2E-05 35.5 13.2 59 316-374 16-76 (142)
260 smart00299 CLH Clathrin heavy 95.3 1.1 2.4E-05 35.7 15.4 85 33-125 11-95 (140)
261 KOG3941 Intermediate in Toll s 95.3 0.93 2E-05 39.8 13.7 104 308-430 65-173 (406)
262 COG4105 ComL DNA uptake lipopr 95.3 1.8 3.8E-05 37.8 22.0 63 385-448 172-237 (254)
263 COG5107 RNA14 Pre-mRNA 3'-end 95.2 2.8 6.1E-05 39.6 31.6 401 4-420 52-540 (660)
264 PF08631 SPO22: Meiosis protei 95.2 2.4 5.2E-05 38.6 25.4 62 242-304 86-150 (278)
265 COG4105 ComL DNA uptake lipopr 95.1 2 4.4E-05 37.5 20.1 173 36-232 41-231 (254)
266 PF09205 DUF1955: Domain of un 95.1 1.1 2.5E-05 34.4 13.0 61 314-375 90-150 (161)
267 KOG3941 Intermediate in Toll s 95.1 0.5 1.1E-05 41.4 11.4 87 27-113 65-172 (406)
268 PF09205 DUF1955: Domain of un 95.1 1.1 2.5E-05 34.3 14.6 135 147-306 14-151 (161)
269 PF04840 Vps16_C: Vps16, C-ter 94.9 3.2 6.9E-05 38.5 31.1 79 317-405 184-262 (319)
270 PF13428 TPR_14: Tetratricopep 94.9 0.09 1.9E-06 31.9 4.9 26 313-338 4-29 (44)
271 COG2976 Uncharacterized protei 94.9 1.4 2.9E-05 36.6 12.8 90 351-445 95-189 (207)
272 PF08631 SPO22: Meiosis protei 94.9 3 6.4E-05 38.0 27.4 163 4-170 3-192 (278)
273 PF13431 TPR_17: Tetratricopep 94.8 0.04 8.6E-07 31.2 2.9 30 369-399 3-32 (34)
274 PF00515 TPR_1: Tetratricopept 94.5 0.12 2.7E-06 29.1 4.6 30 417-446 3-32 (34)
275 PF13374 TPR_10: Tetratricopep 94.4 0.085 1.8E-06 31.5 4.1 35 416-450 3-37 (42)
276 smart00299 CLH Clathrin heavy 94.4 2.1 4.5E-05 34.2 15.2 123 280-425 12-135 (140)
277 KOG1550 Extracellular protein 94.3 6.8 0.00015 39.8 25.9 17 147-163 261-277 (552)
278 PF07719 TPR_2: Tetratricopept 94.2 0.15 3.1E-06 28.7 4.6 31 416-446 2-32 (34)
279 PF13431 TPR_17: Tetratricopep 94.2 0.059 1.3E-06 30.5 2.7 32 17-49 2-33 (34)
280 KOG0890 Protein kinase of the 94.2 14 0.00031 43.0 27.8 318 69-409 1388-1731(2382)
281 PF13170 DUF4003: Protein of u 94.2 4.4 9.5E-05 37.1 17.8 134 80-215 78-227 (297)
282 COG3629 DnrI DNA-binding trans 94.0 0.79 1.7E-05 40.9 10.6 77 346-423 154-235 (280)
283 KOG1550 Extracellular protein 94.0 8.1 0.00017 39.3 27.3 272 151-445 228-539 (552)
284 PF10345 Cohesin_load: Cohesin 93.9 8.9 0.00019 39.6 39.8 429 12-442 39-604 (608)
285 PF13176 TPR_7: Tetratricopept 93.9 0.15 3.3E-06 29.2 4.2 26 417-442 1-26 (36)
286 KOG1920 IkappaB kinase complex 93.9 11 0.00024 40.6 20.8 24 174-197 794-819 (1265)
287 PF10602 RPN7: 26S proteasome 93.8 1.4 3E-05 36.8 11.2 96 137-232 38-140 (177)
288 PF10602 RPN7: 26S proteasome 93.8 1.9 4E-05 36.1 11.9 97 30-126 37-140 (177)
289 COG3629 DnrI DNA-binding trans 93.7 1 2.2E-05 40.3 10.7 80 64-144 153-236 (280)
290 PF13176 TPR_7: Tetratricopept 93.5 0.17 3.6E-06 29.1 3.8 22 384-405 3-24 (36)
291 KOG4648 Uncharacterized conser 93.4 0.4 8.7E-06 43.2 7.6 88 3-92 106-193 (536)
292 COG4785 NlpI Lipoprotein NlpI, 93.0 5.1 0.00011 34.0 17.5 64 64-128 99-162 (297)
293 KOG4234 TPR repeat-containing 92.8 3.1 6.6E-05 34.7 11.1 89 319-409 104-197 (271)
294 KOG4234 TPR repeat-containing 92.7 2.2 4.8E-05 35.5 10.2 94 353-449 103-202 (271)
295 KOG1920 IkappaB kinase complex 92.5 18 0.00039 39.1 23.9 82 245-338 944-1027(1265)
296 COG4649 Uncharacterized protei 92.5 5.1 0.00011 32.7 16.1 123 286-408 69-195 (221)
297 PF06552 TOM20_plant: Plant sp 92.3 1.8 3.8E-05 35.5 9.2 41 361-409 96-136 (186)
298 PF09613 HrpB1_HrpK: Bacterial 92.3 5.2 0.00011 32.3 13.5 51 75-127 21-72 (160)
299 PF00515 TPR_1: Tetratricopept 92.2 0.37 8.1E-06 27.0 4.1 27 382-408 3-29 (34)
300 PF02259 FAT: FAT domain; Int 91.9 11 0.00025 35.6 22.7 65 274-338 145-212 (352)
301 PF13181 TPR_8: Tetratricopept 91.7 0.49 1.1E-05 26.5 4.2 30 417-446 3-32 (34)
302 PF06552 TOM20_plant: Plant sp 91.3 2.1 4.5E-05 35.2 8.6 62 361-425 51-123 (186)
303 PF04097 Nic96: Nup93/Nic96; 91.1 21 0.00044 36.9 20.7 221 213-442 266-532 (613)
304 PF07719 TPR_2: Tetratricopept 91.0 0.6 1.3E-05 26.1 4.1 27 382-408 3-29 (34)
305 KOG1586 Protein required for f 90.6 10 0.00023 32.6 19.0 16 216-231 25-40 (288)
306 KOG0276 Vesicle coat complex C 90.6 6.6 0.00014 38.8 12.5 148 112-300 599-746 (794)
307 PRK09687 putative lyase; Provi 90.4 14 0.0003 33.7 29.7 236 168-425 35-277 (280)
308 PF02259 FAT: FAT domain; Int 90.3 17 0.00036 34.5 23.3 66 308-373 144-212 (352)
309 PRK15180 Vi polysaccharide bio 90.2 18 0.00039 34.8 14.7 121 111-235 301-421 (831)
310 PF13174 TPR_6: Tetratricopept 90.2 0.66 1.4E-05 25.6 3.8 28 419-446 4-31 (33)
311 PF09613 HrpB1_HrpK: Bacterial 90.1 8.9 0.00019 31.0 13.9 52 321-374 21-73 (160)
312 PF13170 DUF4003: Protein of u 89.9 16 0.00034 33.6 19.6 97 291-389 119-226 (297)
313 PF00637 Clathrin: Region in C 89.8 0.015 3.2E-07 46.9 -4.8 51 38-88 16-66 (143)
314 PF07035 Mic1: Colon cancer-as 89.3 11 0.00023 31.0 15.6 30 52-81 17-46 (167)
315 KOG4648 Uncharacterized conser 89.3 1.2 2.6E-05 40.2 6.3 114 317-438 104-218 (536)
316 KOG4570 Uncharacterized conser 89.1 2.3 5.1E-05 38.1 7.8 104 94-199 59-164 (418)
317 PF11207 DUF2989: Protein of u 89.0 4.5 9.8E-05 34.0 9.1 81 73-155 116-198 (203)
318 KOG2114 Vacuolar assembly/sort 88.9 32 0.00069 35.8 28.5 177 33-231 338-516 (933)
319 KOG2396 HAT (Half-A-TPR) repea 88.9 24 0.00052 34.3 39.1 98 342-442 456-557 (568)
320 PF10345 Cohesin_load: Cohesin 88.9 31 0.00068 35.7 36.2 49 356-404 372-428 (608)
321 PF00637 Clathrin: Region in C 88.8 0.48 1E-05 38.0 3.4 84 351-441 13-96 (143)
322 COG2976 Uncharacterized protei 88.7 13 0.00029 31.1 14.6 89 317-410 96-189 (207)
323 PF08424 NRDE-2: NRDE-2, neces 88.3 22 0.00048 33.2 16.4 106 17-125 8-128 (321)
324 PF11207 DUF2989: Protein of u 88.1 15 0.00032 31.1 12.2 72 362-434 123-197 (203)
325 TIGR02561 HrpB1_HrpK type III 88.1 12 0.00026 29.8 11.6 50 76-127 22-72 (153)
326 KOG0276 Vesicle coat complex C 88.1 19 0.00042 35.8 13.6 130 278-440 617-746 (794)
327 KOG4642 Chaperone-dependent E3 88.0 8 0.00017 33.4 9.9 83 320-406 20-104 (284)
328 COG2909 MalT ATP-dependent tra 87.9 38 0.00083 35.6 27.7 89 181-269 426-526 (894)
329 KOG4570 Uncharacterized conser 87.8 10 0.00022 34.3 10.8 99 204-304 63-164 (418)
330 PF13374 TPR_10: Tetratricopep 87.8 1.3 2.9E-05 26.0 4.2 26 347-372 4-29 (42)
331 PRK09687 putative lyase; Provi 87.7 21 0.00047 32.4 26.5 220 203-445 35-264 (280)
332 PF07035 Mic1: Colon cancer-as 87.6 14 0.00031 30.3 15.6 134 14-162 14-147 (167)
333 KOG3364 Membrane protein invol 87.4 11 0.00024 29.4 9.4 71 377-448 29-104 (149)
334 PRK11619 lytic murein transgly 87.4 39 0.00085 35.1 37.1 53 387-442 414-466 (644)
335 KOG2471 TPR repeat-containing 87.4 11 0.00025 36.2 11.5 108 213-322 248-381 (696)
336 cd00923 Cyt_c_Oxidase_Va Cytoc 86.8 5.9 0.00013 28.7 7.2 40 333-372 30-69 (103)
337 PF09986 DUF2225: Uncharacteri 86.0 16 0.00035 31.6 11.2 90 356-445 88-195 (214)
338 PF02284 COX5A: Cytochrome c o 85.9 12 0.00025 27.5 8.9 43 330-372 30-72 (108)
339 TIGR02561 HrpB1_HrpK type III 85.4 17 0.00037 29.0 12.5 53 111-165 22-74 (153)
340 KOG2471 TPR repeat-containing 85.3 38 0.00082 32.9 16.4 109 319-428 249-382 (696)
341 PF07721 TPR_4: Tetratricopept 84.9 1.6 3.5E-05 22.7 2.9 21 419-439 5-25 (26)
342 KOG0890 Protein kinase of the 84.7 95 0.0021 36.9 25.3 61 380-443 1670-1730(2382)
343 COG2909 MalT ATP-dependent tra 84.4 58 0.0013 34.3 28.0 229 213-441 423-685 (894)
344 PF02284 COX5A: Cytochrome c o 84.3 14 0.00031 27.1 8.8 47 47-93 28-74 (108)
345 PF13181 TPR_8: Tetratricopept 83.5 3.8 8.3E-05 22.7 4.4 26 313-338 4-29 (34)
346 KOG1464 COP9 signalosome, subu 83.1 33 0.00071 30.4 18.5 207 165-372 21-258 (440)
347 PF13174 TPR_6: Tetratricopept 82.6 1.9 4.2E-05 23.6 3.0 22 317-338 7-28 (33)
348 PF10579 Rapsyn_N: Rapsyn N-te 81.9 5.7 0.00012 27.5 5.3 47 392-438 18-66 (80)
349 KOG4507 Uncharacterized conser 81.9 10 0.00022 37.4 8.8 118 26-146 604-721 (886)
350 COG3947 Response regulator con 81.6 40 0.00086 30.4 15.4 57 174-231 283-339 (361)
351 COG4455 ImpE Protein of avirul 81.6 12 0.00027 31.9 8.1 74 279-353 5-80 (273)
352 cd00923 Cyt_c_Oxidase_Va Cytoc 81.4 18 0.00039 26.3 9.4 45 258-302 25-69 (103)
353 smart00028 TPR Tetratricopepti 81.3 3.5 7.5E-05 21.8 3.8 26 418-443 4-29 (34)
354 KOG4642 Chaperone-dependent E3 81.1 37 0.0008 29.6 11.7 82 5-90 21-104 (284)
355 KOG4507 Uncharacterized conser 79.6 20 0.00044 35.5 9.9 90 180-270 617-706 (886)
356 TIGR03504 FimV_Cterm FimV C-te 79.3 4.7 0.0001 24.3 3.8 24 35-58 5-28 (44)
357 KOG1464 COP9 signalosome, subu 79.2 45 0.00098 29.5 22.8 148 210-367 150-325 (440)
358 COG1747 Uncharacterized N-term 78.5 71 0.0015 31.4 25.2 95 98-198 65-159 (711)
359 PF10579 Rapsyn_N: Rapsyn N-te 77.6 5.6 0.00012 27.5 4.2 46 41-86 18-65 (80)
360 TIGR03504 FimV_Cterm FimV C-te 76.9 5.9 0.00013 23.9 3.8 23 386-408 5-27 (44)
361 KOG1308 Hsp70-interacting prot 76.8 2.9 6.4E-05 38.0 3.5 114 322-440 126-240 (377)
362 PF13929 mRNA_stabil: mRNA sta 76.7 58 0.0013 29.4 15.6 84 132-215 199-288 (292)
363 COG0790 FOG: TPR repeat, SEL1 76.2 63 0.0014 29.6 22.9 83 290-375 128-221 (292)
364 PRK13800 putative oxidoreducta 75.9 1.3E+02 0.0028 33.1 28.5 247 167-442 632-879 (897)
365 COG3947 Response regulator con 75.5 62 0.0014 29.2 16.7 56 280-336 284-339 (361)
366 PF08424 NRDE-2: NRDE-2, neces 75.4 71 0.0015 29.8 17.5 120 328-449 49-188 (321)
367 TIGR02508 type_III_yscG type I 75.4 29 0.00064 25.4 8.5 53 106-165 46-98 (115)
368 PF04097 Nic96: Nup93/Nic96; 75.2 1.1E+02 0.0023 31.8 24.4 88 142-234 265-356 (613)
369 KOG3807 Predicted membrane pro 73.9 73 0.0016 29.2 11.5 52 142-195 282-336 (556)
370 PRK10941 hypothetical protein; 73.8 66 0.0014 29.1 11.2 59 349-408 185-243 (269)
371 KOG1308 Hsp70-interacting prot 73.6 2.3 4.9E-05 38.7 2.0 87 356-445 125-212 (377)
372 KOG2034 Vacuolar sorting prote 73.6 1.3E+02 0.0028 31.9 24.8 48 3-56 367-416 (911)
373 PF14561 TPR_20: Tetratricopep 73.5 31 0.00068 24.9 8.4 63 368-431 11-74 (90)
374 COG1747 Uncharacterized N-term 73.3 98 0.0021 30.5 26.5 178 204-389 65-248 (711)
375 PF09477 Type_III_YscG: Bacter 73.2 36 0.00077 25.4 8.1 79 79-165 21-99 (116)
376 COG4455 ImpE Protein of avirul 73.2 60 0.0013 28.0 9.9 75 33-108 5-81 (273)
377 PF07163 Pex26: Pex26 protein; 72.8 69 0.0015 28.8 10.5 86 106-193 90-181 (309)
378 PF14853 Fis1_TPR_C: Fis1 C-te 71.9 12 0.00025 23.8 4.4 26 421-446 7-32 (53)
379 KOG2063 Vacuolar assembly/sort 71.5 1.3E+02 0.0027 32.4 13.9 88 355-442 601-711 (877)
380 PF07163 Pex26: Pex26 protein; 71.5 54 0.0012 29.4 9.6 56 142-197 90-145 (309)
381 PF07575 Nucleopor_Nup85: Nup8 71.2 1.3E+02 0.0028 30.9 15.7 30 392-421 507-536 (566)
382 KOG2066 Vacuolar assembly/sort 70.6 1.4E+02 0.0031 31.1 26.2 22 176-197 511-532 (846)
383 PRK10941 hypothetical protein; 69.5 85 0.0018 28.4 10.9 61 102-164 184-244 (269)
384 PF08311 Mad3_BUB1_I: Mad3/BUB 69.3 52 0.0011 25.6 10.2 43 398-440 81-124 (126)
385 KOG4077 Cytochrome c oxidase, 69.2 40 0.00086 26.0 7.2 45 83-127 68-112 (149)
386 KOG4077 Cytochrome c oxidase, 69.0 38 0.00082 26.1 7.1 37 371-407 75-111 (149)
387 PF12862 Apc5: Anaphase-promot 68.5 35 0.00076 24.8 7.1 52 391-442 9-68 (94)
388 PF09986 DUF2225: Uncharacteri 67.9 82 0.0018 27.3 11.4 68 347-414 120-199 (214)
389 PF13929 mRNA_stabil: mRNA sta 67.5 97 0.0021 28.1 18.1 137 114-250 143-288 (292)
390 KOG0128 RNA-binding protein SA 66.8 1.7E+02 0.0038 30.8 37.8 200 28-233 112-340 (881)
391 PF04910 Tcf25: Transcriptiona 66.3 1.2E+02 0.0027 28.8 18.3 94 351-446 109-224 (360)
392 KOG4521 Nuclear pore complex, 64.8 2.3E+02 0.0049 31.4 15.4 20 3-22 929-948 (1480)
393 KOG1586 Protein required for f 64.5 98 0.0021 27.1 19.5 20 180-199 164-183 (288)
394 KOG0376 Serine-threonine phosp 63.4 17 0.00038 35.0 5.6 103 282-390 11-115 (476)
395 PF14561 TPR_20: Tetratricopep 62.8 55 0.0012 23.6 8.6 41 17-58 11-51 (90)
396 PRK13800 putative oxidoreducta 62.7 2.4E+02 0.0053 31.0 32.7 248 132-408 632-880 (897)
397 COG0790 FOG: TPR repeat, SEL1 62.7 1.2E+02 0.0027 27.6 25.0 25 220-244 252-276 (292)
398 TIGR02508 type_III_yscG type I 62.1 61 0.0013 23.9 8.5 16 320-335 49-64 (115)
399 smart00777 Mad3_BUB1_I Mad3/BU 61.7 74 0.0016 24.7 9.7 44 397-440 80-124 (125)
400 KOG0376 Serine-threonine phosp 61.5 19 0.00041 34.8 5.4 98 4-106 14-112 (476)
401 PF09670 Cas_Cas02710: CRISPR- 61.5 1.6E+02 0.0034 28.4 12.4 19 286-304 142-160 (379)
402 PF11846 DUF3366: Domain of un 61.3 53 0.0012 27.9 7.9 35 412-446 141-175 (193)
403 PF12862 Apc5: Anaphase-promot 61.1 56 0.0012 23.7 6.9 17 109-125 51-67 (94)
404 KOG0686 COP9 signalosome, subu 60.7 1.6E+02 0.0034 28.2 12.6 190 17-214 137-353 (466)
405 KOG2066 Vacuolar assembly/sort 60.3 2.2E+02 0.0049 29.8 27.8 167 37-233 364-533 (846)
406 KOG4279 Serine/threonine prote 60.3 2.2E+02 0.0048 29.7 15.3 120 225-346 183-321 (1226)
407 COG4941 Predicted RNA polymera 60.0 1.5E+02 0.0032 27.6 11.2 115 326-444 272-394 (415)
408 PRK10564 maltose regulon perip 59.8 24 0.00052 31.9 5.5 28 349-376 261-288 (303)
409 PF09477 Type_III_YscG: Bacter 59.6 72 0.0016 23.9 8.1 77 291-374 22-98 (116)
410 PF09670 Cas_Cas02710: CRISPR- 59.5 1.7E+02 0.0037 28.2 12.4 56 37-93 139-198 (379)
411 cd00280 TRFH Telomeric Repeat 59.4 68 0.0015 26.8 7.4 23 70-92 117-139 (200)
412 PF14853 Fis1_TPR_C: Fis1 C-te 58.8 44 0.00096 21.2 5.9 30 385-416 6-35 (53)
413 cd00280 TRFH Telomeric Repeat 58.1 82 0.0018 26.3 7.7 25 104-128 116-140 (200)
414 COG0735 Fur Fe2+/Zn2+ uptake r 56.3 82 0.0018 25.3 7.6 60 53-113 10-69 (145)
415 PRK11619 lytic murein transgly 56.0 2.6E+02 0.0057 29.2 38.6 319 66-405 101-464 (644)
416 KOG0545 Aryl-hydrocarbon recep 55.3 1.5E+02 0.0032 26.2 9.7 97 2-101 186-299 (329)
417 KOG0687 26S proteasome regulat 54.6 1.8E+02 0.0039 26.9 15.3 96 136-233 105-209 (393)
418 KOG1839 Uncharacterized protei 54.1 1.9E+02 0.0041 32.3 11.7 159 284-442 941-1126(1236)
419 cd08819 CARD_MDA5_2 Caspase ac 53.9 79 0.0017 22.6 6.8 65 48-118 21-85 (88)
420 PF11846 DUF3366: Domain of un 53.8 68 0.0015 27.2 7.3 33 167-199 141-173 (193)
421 KOG2908 26S proteasome regulat 53.6 1.9E+02 0.0041 26.9 10.6 78 279-356 79-167 (380)
422 PF14689 SPOB_a: Sensor_kinase 53.3 41 0.00089 22.2 4.6 21 386-406 29-49 (62)
423 PF00244 14-3-3: 14-3-3 protei 53.2 1.6E+02 0.0035 26.0 10.5 46 397-442 143-196 (236)
424 PF14689 SPOB_a: Sensor_kinase 53.1 36 0.00078 22.4 4.3 21 141-161 29-49 (62)
425 KOG2297 Predicted translation 52.8 1.9E+02 0.004 26.5 16.2 70 286-365 266-341 (412)
426 PF11663 Toxin_YhaV: Toxin wit 52.5 16 0.00036 28.4 2.9 26 45-72 111-136 (140)
427 PF11817 Foie-gras_1: Foie gra 51.5 86 0.0019 28.0 7.8 79 116-197 162-245 (247)
428 PF13762 MNE1: Mitochondrial s 49.4 1.4E+02 0.0029 24.0 10.3 48 99-147 79-127 (145)
429 COG5159 RPN6 26S proteasome re 49.3 2E+02 0.0044 26.0 15.4 94 280-373 130-234 (421)
430 PF14929 TAF1_subA: TAF RNA Po 48.5 3.1E+02 0.0068 27.9 13.7 141 38-185 318-470 (547)
431 smart00386 HAT HAT (Half-A-TPR 48.3 42 0.0009 17.8 4.3 8 13-20 6-13 (33)
432 PF11817 Foie-gras_1: Foie gra 48.1 1.1E+02 0.0023 27.4 7.9 19 36-54 17-35 (247)
433 PF11663 Toxin_YhaV: Toxin wit 47.5 21 0.00046 27.8 2.8 29 323-353 108-136 (140)
434 KOG0551 Hsp90 co-chaperone CNS 47.2 1.6E+02 0.0035 27.3 8.5 95 312-407 83-180 (390)
435 PF11848 DUF3368: Domain of un 46.5 69 0.0015 19.8 5.1 31 76-106 14-44 (48)
436 KOG2422 Uncharacterized conser 46.4 3.3E+02 0.0071 27.6 17.0 93 354-446 351-450 (665)
437 KOG2063 Vacuolar assembly/sort 46.0 4.3E+02 0.0092 28.7 19.7 116 137-252 506-638 (877)
438 PF04190 DUF410: Protein of un 45.8 2.3E+02 0.0049 25.5 18.9 27 203-229 88-114 (260)
439 PF08311 Mad3_BUB1_I: Mad3/BUB 45.7 1.4E+02 0.0031 23.2 8.9 43 153-195 81-124 (126)
440 KOG0551 Hsp90 co-chaperone CNS 45.6 77 0.0017 29.3 6.3 98 29-127 81-181 (390)
441 KOG1839 Uncharacterized protei 45.4 3.2E+02 0.007 30.6 11.8 127 37-163 940-1085(1236)
442 PF10366 Vps39_1: Vacuolar sor 45.2 1.3E+02 0.0029 22.6 7.0 27 172-198 41-67 (108)
443 KOG2396 HAT (Half-A-TPR) repea 44.9 3.3E+02 0.007 27.1 36.0 379 47-445 89-526 (568)
444 COG4976 Predicted methyltransf 44.7 59 0.0013 28.2 5.2 54 4-58 5-58 (287)
445 PRK10564 maltose regulon perip 44.1 49 0.0011 30.1 4.9 29 33-61 261-289 (303)
446 KOG3364 Membrane protein invol 44.0 1.6E+02 0.0035 23.3 9.8 68 97-164 30-100 (149)
447 PF09454 Vps23_core: Vps23 cor 43.5 60 0.0013 21.7 4.1 48 344-392 7-54 (65)
448 PF04190 DUF410: Protein of un 43.0 2.5E+02 0.0055 25.3 19.4 25 309-333 89-113 (260)
449 COG3825 Uncharacterized protei 42.9 1.5E+02 0.0032 27.1 7.5 55 367-422 5-59 (393)
450 COG0735 Fur Fe2+/Zn2+ uptake r 42.2 1.8E+02 0.0038 23.4 7.5 62 16-78 8-69 (145)
451 PF12968 DUF3856: Domain of Un 41.8 1.6E+02 0.0035 22.7 11.2 62 381-442 56-127 (144)
452 COG4976 Predicted methyltransf 41.5 68 0.0015 27.9 5.1 52 356-408 6-57 (287)
453 KOG0991 Replication factor C, 40.5 2.6E+02 0.0056 24.7 12.8 58 146-204 203-272 (333)
454 PF14432 DYW_deaminase: DYW fa 40.3 10 0.00022 29.0 0.2 19 501-523 2-21 (116)
455 PF03745 DUF309: Domain of unk 40.3 69 0.0015 21.1 4.1 49 39-87 9-62 (62)
456 PF00244 14-3-3: 14-3-3 protei 40.3 2.6E+02 0.0057 24.7 10.3 48 361-408 142-197 (236)
457 COG5187 RPN7 26S proteasome re 40.0 2.9E+02 0.0063 25.1 13.7 100 132-233 112-220 (412)
458 COG5159 RPN6 26S proteasome re 39.8 2.9E+02 0.0063 25.1 21.4 199 35-233 9-234 (421)
459 PF02184 HAT: HAT (Half-A-TPR) 39.8 69 0.0015 17.8 3.4 12 362-373 4-15 (32)
460 PHA02537 M terminase endonucle 39.6 2.7E+02 0.0057 24.5 10.4 28 427-454 190-217 (230)
461 PF15297 CKAP2_C: Cytoskeleton 39.0 1.9E+02 0.0042 27.0 7.9 44 66-109 142-185 (353)
462 KOG2422 Uncharacterized conser 38.7 4.4E+02 0.0095 26.8 18.6 158 6-163 250-447 (665)
463 PF10475 DUF2450: Protein of u 38.2 3.2E+02 0.007 25.1 9.7 113 104-228 103-220 (291)
464 KOG2908 26S proteasome regulat 38.1 3.4E+02 0.0074 25.4 10.1 69 243-311 78-156 (380)
465 KOG0991 Replication factor C, 37.7 2.9E+02 0.0062 24.4 13.3 37 377-414 236-272 (333)
466 PF10366 Vps39_1: Vacuolar sor 37.2 1.8E+02 0.0039 21.9 7.6 27 417-443 41-67 (108)
467 PRK13342 recombination factor 37.1 4.1E+02 0.0088 26.0 20.0 24 149-172 244-267 (413)
468 KOG2034 Vacuolar sorting prote 36.8 5.7E+02 0.012 27.5 30.7 302 35-374 364-696 (911)
469 PF10475 DUF2450: Protein of u 36.0 3.5E+02 0.0075 24.9 9.4 52 176-233 104-155 (291)
470 PF15297 CKAP2_C: Cytoskeleton 35.7 3.8E+02 0.0082 25.2 10.0 63 362-426 120-186 (353)
471 PF10255 Paf67: RNA polymerase 35.3 4.3E+02 0.0093 25.7 10.8 134 309-442 38-191 (404)
472 PRK13184 pknD serine/threonine 35.1 6.6E+02 0.014 27.8 31.4 98 34-134 480-587 (932)
473 KOG0686 COP9 signalosome, subu 34.3 4.3E+02 0.0094 25.5 15.9 175 65-248 151-352 (466)
474 KOG0292 Vesicle coat complex C 33.9 6.4E+02 0.014 27.3 11.5 53 396-448 1063-1117(1202)
475 COG4259 Uncharacterized protei 33.8 1.9E+02 0.0041 21.3 5.5 32 385-418 77-108 (121)
476 KOG4567 GTPase-activating prot 33.4 2.5E+02 0.0055 25.8 7.5 43 331-373 264-306 (370)
477 PF10516 SHNi-TPR: SHNi-TPR; 32.4 92 0.002 18.1 3.2 29 417-445 3-31 (38)
478 PF11838 ERAP1_C: ERAP1-like C 32.1 4.2E+02 0.009 24.6 18.4 133 115-252 146-287 (324)
479 KOG2062 26S proteasome regulat 31.8 6.4E+02 0.014 26.6 28.9 27 173-199 213-239 (929)
480 PF09454 Vps23_core: Vps23 cor 31.2 1.5E+02 0.0033 19.8 4.6 49 133-182 6-54 (65)
481 PF13762 MNE1: Mitochondrial s 31.1 2.8E+02 0.0061 22.3 10.6 79 314-392 43-127 (145)
482 PF04910 Tcf25: Transcriptiona 30.4 4.9E+02 0.011 24.9 18.9 53 249-301 112-165 (360)
483 KOG4521 Nuclear pore complex, 30.3 8.3E+02 0.018 27.5 15.2 118 102-227 986-1124(1480)
484 COG5108 RPO41 Mitochondrial DN 28.9 3.3E+02 0.0072 28.1 8.2 71 34-107 33-111 (1117)
485 KOG0403 Neoplastic transformat 28.5 5.7E+02 0.012 25.0 16.5 58 383-441 512-569 (645)
486 KOG4567 GTPase-activating prot 28.3 4.8E+02 0.01 24.1 9.8 57 295-356 263-319 (370)
487 PF09868 DUF2095: Uncharacteri 28.3 2.4E+02 0.0053 21.3 5.5 36 70-106 67-102 (128)
488 PF11838 ERAP1_C: ERAP1-like C 28.1 4.9E+02 0.011 24.1 18.6 110 151-264 146-261 (324)
489 COG5191 Uncharacterized conser 28.0 2.1E+02 0.0045 26.3 6.1 76 307-384 104-180 (435)
490 PF12793 SgrR_N: Sugar transpo 28.0 2.8E+02 0.006 21.2 7.0 60 133-194 17-94 (115)
491 PRK13184 pknD serine/threonine 27.7 8.7E+02 0.019 26.9 24.2 89 107-199 483-581 (932)
492 COG4941 Predicted RNA polymera 27.3 5.3E+02 0.011 24.2 11.8 21 178-198 373-393 (415)
493 COG4259 Uncharacterized protei 26.9 2.6E+02 0.0057 20.6 6.4 24 102-125 75-98 (121)
494 cd02680 MIT_calpain7_2 MIT: do 26.4 1.4E+02 0.0031 20.6 3.9 15 393-407 19-33 (75)
495 cd07153 Fur_like Ferric uptake 25.8 2.3E+02 0.005 21.4 5.6 45 386-430 6-50 (116)
496 COG5108 RPO41 Mitochondrial DN 25.5 4.8E+02 0.011 27.0 8.6 75 69-147 33-115 (1117)
497 PF11123 DNA_Packaging_2: DNA 25.2 2.3E+02 0.0051 19.4 5.5 28 81-109 14-41 (82)
498 PF01475 FUR: Ferric uptake re 24.9 1.9E+02 0.0042 22.0 5.1 46 385-430 12-57 (120)
499 PF04348 LppC: LppC putative l 24.8 24 0.00053 35.6 0.0 91 34-124 29-123 (536)
500 cd07153 Fur_like Ferric uptake 24.4 2.1E+02 0.0046 21.6 5.2 43 71-113 7-49 (116)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-70 Score=574.93 Aligned_cols=503 Identities=18% Similarity=0.250 Sum_probs=473.8
Q ss_pred CccccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008925 1 MNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV 80 (548)
Q Consensus 1 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (548)
|+.|.+.|++++|..+|+.|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|.+.|+.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 356889999999999999984 4788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYK 160 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (548)
+.|.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999995 47899999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008925 161 MVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240 (548)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 240 (548)
|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|++|.+ +|.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 455 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDV 455 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864 688
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGY 320 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (548)
.+|+.++.+|.+.|+.++|..+|++|.. +++||..+|+.++.+|++.|+++.+.+++..+.+.|+.++..+++.|+.+|
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 9999999999999999999999999986 589999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 321 VRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (548)
+++|++++|..+|+.+ .||..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.
T Consensus 535 ~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 9999999999999987 48999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hccCCCCC------------cchhHHHHHHHhhccc
Q 008925 401 ELLQVME-EKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE-EDRQSMPN------------KKDEIAVESIHRKQNL 466 (548)
Q Consensus 401 ~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~------------~~~~~~~~~l~~~~~~ 466 (548)
++|+.|. +.|+.|+..+|.+++++|.+.|++++|.+++++|+ +++...|+ +..+.+++.+.++.
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~-- 687 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELD-- 687 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--
Confidence 9999999 78999999999999999999999999999999986 55544441 12344456666654
Q ss_pred cccccccccccccccccCCCChhhhhhhhhhccc-----ccccchhhhhHHh-hccCCCCCchh
Q 008925 467 SASNSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS-----DTVWTATKSLFVN-TYGSGVQPMVV 524 (548)
Q Consensus 467 ~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~-----g~~w~~~~~~~~~-~~~~~~~~~~~ 524 (548)
|.+.+.|..|+++|...|+|++|.++|+.|.+++ |+||+++++++|. ..||.+||...
T Consensus 688 p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~ 751 (857)
T PLN03077 688 PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK 751 (857)
T ss_pred CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchH
Confidence 4577889999999999999999999999999988 9999999999999 99999999874
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-66 Score=533.69 Aligned_cols=483 Identities=20% Similarity=0.296 Sum_probs=284.4
Q ss_pred ccccCChhhHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEG-HRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
+.+.|++++|+++|+.|...+ ..|+..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+.|+.+|++.|++++
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~ 176 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID 176 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHH
Confidence 444555555555555555432 3455555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+. +..|+..+|+.++.+++..|..+.+.+++..+.
T Consensus 177 A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~ 251 (697)
T PLN03081 177 ARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251 (697)
T ss_pred HHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 555555553 245555555555555555555555555555432 345555555555555555555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008925 163 ASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVV 242 (548)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 242 (548)
+.|+.||..+|+.|+.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 252 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 555555555555555555555555555555555532 3555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008925 243 FNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR 322 (548)
Q Consensus 243 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (548)
|+.++.+|++.|+++.|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|. .||..+|+.|+.+|++
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555553 3455555555555555
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 323 AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCE-IGINPNLKTYETLLWGYGEAKQPWRAEE 401 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (548)
.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 555555555555555555555555555555555555555555555555543 3555555555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhcccccccccccccccccc
Q 008925 402 LLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVS 481 (548)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~ 481 (548)
++++| ++.|+..+|..++.+|...|+++.|..+++++. ...|.+...|..|+++|.
T Consensus 484 ~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~---------------------~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 484 MIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY---------------------GMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred HHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---------------------CCCCCCCcchHHHHHHHH
Confidence 54433 344555555555555555555555555555432 223446678999999999
Q ss_pred ccCCCChhhhhhhhhhccc-----ccccchhhhhHHh-hccCCCCCch
Q 008925 482 SEHNGSSAAKIRSQIVLRS-----DTVWTATKSLFVN-TYGSGVQPMV 523 (548)
Q Consensus 482 ~~~~~~~a~~~~~~~~~~~-----g~~w~~~~~~~~~-~~~~~~~~~~ 523 (548)
+.|+|++|.++++.|.+++ |+||+++++++|. ..||..||..
T Consensus 540 ~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~ 587 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQS 587 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccH
Confidence 9999999999999999888 9999999999999 9999999975
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.5e-63 Score=508.19 Aligned_cols=491 Identities=20% Similarity=0.298 Sum_probs=409.1
Q ss_pred ccccccCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008925 2 NILVGKGKPHEAHYIFNCLIEEGH-RPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV 80 (548)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (548)
+.+.+.|++++|+++|++|.+.|. .++...++.++..|.+.|.+++|..+|+.|.. ||..+|+.++.+|++.|++
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCH
Confidence 356788999999999999999885 45667778888888888899999988888753 7888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYK 160 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (548)
+.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. ++.||..+|+.++.+|++.|++++|.++|++
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 999999999998888899999999999999999999999999998764 5788999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008925 161 MVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQN--NQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHP 238 (548)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 238 (548)
|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.+++|
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99888889999999999999999999999999999876 5678898999999999999999999999999999888888
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 239 NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAK 318 (548)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (548)
+..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999888889999999999999999999999999999998888899999999999
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWR 398 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (548)
+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999988888899999999999999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHHHhccCCCCC-----
Q 008925 399 AEELLQVMEEKGVRPKKSTIQLVADSWRA----I-------------------GLAREAKRVLKSAEEDRQSMPN----- 450 (548)
Q Consensus 399 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~~----- 450 (548)
|.+++++|.+.|+.||..++..++..|.+ + +..++|..+|++|.+..-....
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~ 852 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ 852 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999988899998888888765432 1 2347899999988865422110
Q ss_pred -------cchhHHHHHHHh-h--ccccccccccccccccccccCCC-Chhhhhhhhhhccc
Q 008925 451 -------KKDEIAVESIHR-K--QNLSASNSTFLQIPGVVSSEHNG-SSAAKIRSQIVLRS 500 (548)
Q Consensus 451 -------~~~~~~~~~l~~-~--~~~~~~~~~~~~l~~~y~~~~~~-~~a~~~~~~~~~~~ 500 (548)
.........+.. + .+.+++...|..|-+-+ |++ ++|..+.+.|...|
T Consensus 853 vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 853 VLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcC
Confidence 011111222222 2 23334444555554433 444 47999999998888
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.5e-61 Score=493.42 Aligned_cols=435 Identities=22% Similarity=0.353 Sum_probs=340.5
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+.+.|..++|+.+|+.|.. |+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.|+.+|++.|++++
T Consensus 415 ~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 415 ACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 45667778888887777642 77788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|... ++.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 491 A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888887777788888888888888888888888888887653 577888888888888888888888888888886
Q ss_pred H--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008925 163 A--SGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240 (548)
Q Consensus 163 ~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 240 (548)
. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~ 649 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Confidence 5 46777888888888888888888888888888888877778888888888888888888888888888887777888
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGY 320 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (548)
.+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.|+.+|
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy 729 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 88888888888888888888888888887777888888888888888888888888888887777778888888888888
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--------
Q 008925 321 VRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE-------- 392 (548)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------- 392 (548)
++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+..|.+
T Consensus 730 ~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l 809 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACAL 809 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 888888888888888887777888888888888888888888888888888887888888888777755431
Q ss_pred ---------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 393 ---------------AKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 393 ---------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
.+..++|..+|++|.+.|+.||..+|..++.+++..+..+.+..+++.+.
T Consensus 810 ~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 810 GEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred hhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 12246788888888888888887777777766666666776666666554
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.8e-58 Score=484.97 Aligned_cols=481 Identities=18% Similarity=0.287 Sum_probs=330.1
Q ss_pred ccccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 008925 2 NILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVD 81 (548)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 81 (548)
+.|.+.|+++.|.++|++|. .||..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.+|...+++.
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 34667777777777777763 35677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 008925 82 EAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKM 161 (548)
Q Consensus 82 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 161 (548)
.+.+++..+.+.|+.|+..+++.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777764 356677777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 008925 162 VASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLV 241 (548)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 241 (548)
.+.|+.||..||+.++.+|.+.|+.+.|.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence 77777777777777777777777777777777777777777777777777777777777777777777764 35666
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 242 VFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYV 321 (548)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (548)
+|+.++.+|.+.|++++|.++|++|.+.++.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------
Q 008925 322 RAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCE---------------------------- 373 (548)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------------------- 373 (548)
+.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|..
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 77777777776666643 3455555555555555555555555555543
Q ss_pred ------cCC------------------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008925 374 ------IGI------------------------------NPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKST 417 (548)
Q Consensus 374 ------~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 417 (548)
.|+ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..|
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 111 34556677777777888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC--------------cchhHHHHHHHhhcccccccccccccccccccc
Q 008925 418 IQLVADSWRAIGLAREAKRVLKSAEEDRQSMPN--------------KKDEIAVESIHRKQNLSASNSTFLQIPGVVSSE 483 (548)
Q Consensus 418 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~ 483 (548)
|..++.+|.+.|++++|.++|++|.+..+..|. ...+.+.+.+.++. ..++...|..|-+.|...
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITPDPAVWGALLNACRIH 670 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHc
Confidence 888888888888888888888888754444332 11122222222222 233444555555556566
Q ss_pred CCCChhhhhhhhhhccc
Q 008925 484 HNGSSAAKIRSQIVLRS 500 (548)
Q Consensus 484 ~~~~~a~~~~~~~~~~~ 500 (548)
|+.+.++.+-+++.+.+
T Consensus 671 ~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 671 RHVELGELAAQHIFELD 687 (857)
T ss_pred CChHHHHHHHHHHHhhC
Confidence 66666665555554433
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-57 Score=466.28 Aligned_cols=438 Identities=18% Similarity=0.269 Sum_probs=412.5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 008925 27 PTLITYTTLVAALTRQKRFKSILSLISKVEKDG-MKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTL 105 (548)
Q Consensus 27 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 105 (548)
++..+|+.++..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 355689999999999999999999999998764 6899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008925 106 IKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGE 185 (548)
Q Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 185 (548)
+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++...|.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 999999999999999999995 479999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 008925 186 TYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTL 265 (548)
Q Consensus 186 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 265 (548)
.+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|. ++|..+|+.++.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999996 47899999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH
Q 008925 266 MEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNV 345 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 345 (548)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++||..+++.|+.+|+++|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964 799
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE-KGVRPKKSTIQLVADS 424 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~ 424 (548)
.+|+.|+.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|.+++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999985 6999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccccccccccccccccccCCCChhhhhhhhhhccc
Q 008925 425 WRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS 500 (548)
Q Consensus 425 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~ 500 (548)
|.+.|++++|.+++++++ . .++...|..|.+.+...|+.+.|.++.+++.+.+
T Consensus 472 l~r~G~~~eA~~~~~~~~-------~----------------~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~ 524 (697)
T PLN03081 472 LGREGLLDEAYAMIRRAP-------F----------------KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524 (697)
T ss_pred HHhcCCHHHHHHHHHHCC-------C----------------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence 999999999999998752 1 1123345556677888889999999888886655
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.5e-32 Score=292.33 Aligned_cols=483 Identities=12% Similarity=0.039 Sum_probs=380.1
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+...|++++|...|+.+.+..+. +...+..++..+...|++++|.+.++.+.+.. +........++..+.+.|++++
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 449 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDK 449 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHH
Confidence 467789999999999999886543 66778888888999999999999999988764 2334456667788888999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
|..+++.+... .+.+..++..+...+...|++++|.+.|+++.... +.+...+..++..+...|++++|.+.++++.
T Consensus 450 A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 450 ALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999988775 35567788888889999999999999998887642 4556777888888888999999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008925 163 ASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVV 242 (548)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 242 (548)
+.+ +.+..++..+...+...|++++|...++++...... +...+..++..+...|++++|..+++++.+.. +.+...
T Consensus 527 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 603 (899)
T TIGR02917 527 TID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEA 603 (899)
T ss_pred HhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 765 556778888888888899999999998888776443 66677778888888899999999988887754 567788
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008925 243 FNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR 322 (548)
Q Consensus 243 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (548)
|..++..+...|++++|...++.+.+.. +.+...+..+..++...|++++|..+++++.+.. +.+..++..++..+..
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 8888888888899999999888887764 3356777788888888899999999988888765 5667788888888888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008925 323 AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEEL 402 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 402 (548)
.|++++|..+++.+.+.. +++...+..++..+...|++++|.+.|+++...+ |+..++..++.++.+.|++++|.+.
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHH
Confidence 888999988888888764 3466677788888888888888988888888763 5557777888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC------------cchhHHHHHHHh-hcccccc
Q 008925 403 LQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPN------------KKDEIAVESIHR-KQNLSAS 469 (548)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~-~~~~~~~ 469 (548)
++++.+.. +.+...+..++.++...|++++|+..++++.+..|..+. .. ..+.+.+.+ +...|.+
T Consensus 759 ~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~ 836 (899)
T TIGR02917 759 LEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNI 836 (899)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCC
Confidence 88888653 345567778888888888888888888888877665431 11 223333333 2334455
Q ss_pred ccccccccccccccCCCChhhhhhhhhhccc
Q 008925 470 NSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS 500 (548)
Q Consensus 470 ~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~ 500 (548)
+..+..+|.+|...|++++|.+..+++...+
T Consensus 837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 837 PAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5566678888888899999999888888766
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-31 Score=288.15 Aligned_cols=483 Identities=14% Similarity=0.076 Sum_probs=376.7
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+...|++++|+..++.+.+..+ .+...+..++..+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHH
Confidence 45678888889888888887643 366778888888888889999998888887763 4466677788888888888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
|.+.|+.+.+.. +........++..+.+.|++++|+.+++.+... .+++...+..++..+...|++++|...|+++.
T Consensus 416 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 416 AIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 988888887764 223455666778888888899998888888764 35667788888888888889999999888888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008925 163 ASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVV 242 (548)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 242 (548)
+.. +.+...+..++..+...|++++|.+.++.+.+..+. +..++..+...+.+.|++++|..+++++...+ +.+...
T Consensus 493 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 569 (899)
T TIGR02917 493 SIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEP 569 (899)
T ss_pred hhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhH
Confidence 764 445667778888888888998898888888776543 67778888888888888999988888887754 556677
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008925 243 FNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR 322 (548)
Q Consensus 243 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (548)
+..++..+...|++++|..+++.+.+.. +.+...+..++.++...|++++|...++.+.+.. +.+...+..++.++..
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 7888888888888888888888887754 4467788888888888889999998888888765 5567778888888888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008925 323 AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEEL 402 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 402 (548)
.|++++|..+++++.+.. +.+..++..++..+...|++++|.++++.+.+.. +++...+..++..+...|++++|...
T Consensus 648 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 648 MKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 889999998888888753 3356778888888888889999999888888765 66777888888888888999999998
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC------------CcchhHHHHHHHh-hcccccc
Q 008925 403 LQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP------------NKKDEIAVESIHR-KQNLSAS 469 (548)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~-~~~~~~~ 469 (548)
++++.+. .|+..++..++.++.+.|++++|.+.++++.+..|..+ ......+...+.+ +...|.+
T Consensus 726 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 803 (899)
T TIGR02917 726 YRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN 803 (899)
T ss_pred HHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 8888874 45557777788888888999999888888887666543 1122223322222 2344556
Q ss_pred ccccccccccccccCCCChhhhhhhhhhccc
Q 008925 470 NSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS 500 (548)
Q Consensus 470 ~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~ 500 (548)
+..+..++.+|...|+ ++|.+..++.....
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 6677778888888888 77888888776654
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1.3e-26 Score=212.49 Aligned_cols=428 Identities=14% Similarity=0.116 Sum_probs=350.8
Q ss_pred cccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 5 VGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAM 84 (548)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 84 (548)
.+.|++.+|.+.-...-+.++. +......+...+.+..+++....--....+. .+.-..+|..+...+-..|+++.|+
T Consensus 59 yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al 136 (966)
T KOG4626|consen 59 YQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDAL 136 (966)
T ss_pred HhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHH
Confidence 4667777777776665554332 3334444555566666666655544444443 2445678999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHH
Q 008925 85 KIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTY-NILVRAWCSKNSIEEAWNVVYKMVA 163 (548)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 163 (548)
.+++.+++.. +.....|..+..++...|+.+.|.+.|.+..+. .|+.... ..+....-..|++++|...|.+.++
T Consensus 137 ~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 137 ALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 9999999863 336788999999999999999999999988874 5665443 4445555668999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008925 164 SGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVF 243 (548)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 243 (548)
.. +--...|+.|.-.+-..|+...|+..|++..+.++. =...|-.|+..|...+.+++|+..+.++.... +.....+
T Consensus 213 ~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~ 289 (966)
T KOG4626|consen 213 TQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAH 289 (966)
T ss_pred hC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhc
Confidence 63 223678999999999999999999999999876443 35678889999999999999999999988754 4556888
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008925 244 NSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRA 323 (548)
Q Consensus 244 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (548)
..+...|..+|+.+-|+..+++.++..+. -+..|+.+..++...|++.+|...|...+... +....+.+.|...|...
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQ 367 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 89999999999999999999999987532 46789999999999999999999999999875 55677899999999999
Q ss_pred CCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 008925 324 GEPQKAESILTSMRKYGVHPNV-VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN-LKTYETLLWGYGEAKQPWRAEE 401 (548)
Q Consensus 324 g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 401 (548)
|.+++|..+|....+- .|.. ...+.|...|-++|++++|+..|++++.. .|+ ...|+.++..|-..|+.+.|+.
T Consensus 368 ~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred ccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHH
Confidence 9999999999999884 5554 47899999999999999999999999985 565 4789999999999999999999
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 402 LLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 402 ~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
.+.+++. +.|... ....++.++..+|+..+|+.-++.++..+|.+|
T Consensus 444 ~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 444 CYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 9999988 467755 888999999999999999999999999999888
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.3e-24 Score=234.67 Aligned_cols=482 Identities=11% Similarity=0.037 Sum_probs=288.3
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLI-TYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVD 81 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 81 (548)
.+...|++++|+..|+.+.+.+++ +.. ............|+.++|++.++++.+.. |.+...+..+...+...|+.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHH
Confidence 356789999999999999876433 332 22222222335689999999999998874 556778888889999999999
Q ss_pred HHHHHHHHHHhcCC----------------C----------------CCHHHH---------------------HHHHHH
Q 008925 82 EAMKIFQKMKDSGC----------------K----------------PTTSTY---------------------NTLIKG 108 (548)
Q Consensus 82 ~A~~~~~~~~~~~~----------------~----------------~~~~~~---------------------~~l~~~ 108 (548)
+|++.++++..... . |+.... ......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 99999998754310 0 100000 012344
Q ss_pred HhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHH------------HH
Q 008925 109 YGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQP-DAVTY------------NT 175 (548)
Q Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~------------~~ 175 (548)
+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++.++..... ....+ ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 566788888988888887752 4567788888888888899999999888888753211 11111 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----
Q 008925 176 LARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFL---- 251 (548)
Q Consensus 176 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 251 (548)
+...+.+.|++++|+..|+++.+..+. +...+..+..++...|++++|++.|+++++.. +.+...+..+...+.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCH
Confidence 345667888888999988888877543 56677778888888899999999888888754 334444444444432
Q ss_pred --------------------------------------cCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhH
Q 008925 252 --------------------------------------DIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGK 293 (548)
Q Consensus 252 --------------------------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 293 (548)
..|++++|.+.+++..+..+. ++..+..+...+...|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 334444444444444443211 23333444444444444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHhccCChHHH
Q 008925 294 CQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVV---------MFTTVISGWCNAVKMQRA 364 (548)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---------~~~~l~~~~~~~g~~~~A 364 (548)
|...++++++.. +.+...+..+...+...+++++|+..++.+......++.. .+..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 444444444332 2233333333333333344444443333322110000000 011223334445555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008925 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (548)
+++++ . .+++...+..+...+.+.|++++|+..|+++++.. +.+...+..++.++...|++++|++.++++++.
T Consensus 593 ~~~l~----~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLR----Q-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHH----h-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 55554 1 24556666777777778888888888888777642 223457777777777788888888888877765
Q ss_pred cCCCCC------------cchhHHHHHHHhhc-ccccc------ccccccccccccccCCCChhhhhhhhhhc
Q 008925 445 RQSMPN------------KKDEIAVESIHRKQ-NLSAS------NSTFLQIPGVVSSEHNGSSAAKIRSQIVL 498 (548)
Q Consensus 445 ~~~~~~------------~~~~~~~~~l~~~~-~~~~~------~~~~~~l~~~y~~~~~~~~a~~~~~~~~~ 498 (548)
.|..+. .....+.+.+.+.. ..+.+ ...+..++.+|...|++++|.+.+++...
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 544331 11222222222221 11111 12344578999999999999998887753
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=5.3e-24 Score=229.91 Aligned_cols=486 Identities=11% Similarity=0.055 Sum_probs=270.8
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH----------------
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILF---------------- 67 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---------------- 67 (548)
+...++.+.|.+.++++....+. ++.++..++..+.+.|+.++|.+.++++.+.. |.+....
T Consensus 38 ~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~ 115 (1157)
T PRK11447 38 GEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQA 115 (1157)
T ss_pred HHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhH
Confidence 34556666777777766665433 55666666666667777777777777766653 2222221
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 008925 68 NAMINACSESGNVDEAMKIFQKMKDSGCKPTTS-TYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWC 146 (548)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (548)
..+...+...|++++|++.|+++.+.. +|+.. ............|+.++|++.++++.+.. |.+...+..+...+.
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 222334566677777777777766542 22321 11111111223466667777776666542 344555666666666
Q ss_pred hCCCHHHHHHHHHHHHHCCC----------------C----------------CCHHH---------------------H
Q 008925 147 SKNSIEEAWNVVYKMVASGI----------------Q----------------PDAVT---------------------Y 173 (548)
Q Consensus 147 ~~g~~~~a~~~~~~~~~~~~----------------~----------------~~~~~---------------------~ 173 (548)
..|+.++|+..++++.+... . |+... .
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 66676666666666543210 0 00000 0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH---------
Q 008925 174 NTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHP-NLVVF--------- 243 (548)
Q Consensus 174 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~--------- 243 (548)
......+...|++++|+..|++.++..+. +..++..+..++.+.|++++|+..|+++.+..... ....|
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 01133445566777777777766665332 55666666677777777777777777766543111 11111
Q ss_pred ---HHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH-----
Q 008925 244 ---NSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSI----- 315 (548)
Q Consensus 244 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 315 (548)
......+...|++++|...++++.+..+ .+...+..+..++...|++++|++.|+++++.. +.+...+..
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 1123345566677777777776666542 244555566666677777777777777666553 233333322
Q ss_pred -------------------------------------HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 008925 316 -------------------------------------LAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA 358 (548)
Q Consensus 316 -------------------------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 358 (548)
+...+...|++++|+..|+++++.. +-+...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 2334455677777777777777653 12344566677777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----------------------------
Q 008925 359 VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK----------------------------- 409 (548)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------------- 409 (548)
|++++|...++++++.. +.+...+..+...+...|+.++|+..++.+...
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 77777777777777643 334444333333334444444444443332100
Q ss_pred ----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC------------CcchhHHHHHHHhh-ccc
Q 008925 410 ----------GVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP------------NKKDEIAVESIHRK-QNL 466 (548)
Q Consensus 410 ----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~-~~~ 466 (548)
..+++...+..++..+.+.|++++|+..++++.+.+|..+ ......+...+..+ ...
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 0123344556677777788888888888888877666544 11222222333332 233
Q ss_pred cccccccccccccccccCCCChhhhhhhhhhcc
Q 008925 467 SASNSTFLQIPGVVSSEHNGSSAAKIRSQIVLR 499 (548)
Q Consensus 467 ~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~ 499 (548)
|.+...+..++.++...|++++|.++.+++...
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 345555666777787888888888877777654
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=6.4e-25 Score=201.42 Aligned_cols=406 Identities=12% Similarity=0.090 Sum_probs=339.7
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
+.+..+.+.....-...++..+. -..+|..+...+-..|++++|+.+++.+.+.. +..+..|..+..++...|+.+.|
T Consensus 92 ~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a 169 (966)
T KOG4626|consen 92 FFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELA 169 (966)
T ss_pred hhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCccc
Confidence 34445555555555555554333 55789999999999999999999999999863 33577999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 84 MKIFQKMKDSGCKPTTST-YNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
.+.|.+.++. .|+... ...+...+...|++++|...|.+..... +--...|..|...+-.+|+...|++.|++.+
T Consensus 170 ~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 170 VQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred HHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 9999999986 465544 3456666677899999999998887642 2335789999999999999999999999999
Q ss_pred HCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 008925 163 ASGIQPD-AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLV 241 (548)
Q Consensus 163 ~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 241 (548)
+.. |+ ...|..|...|...+.+++|...|.......+. ...++..+...|...|+.+.|+..+++.++.. |.=+.
T Consensus 246 kld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~ 321 (966)
T KOG4626|consen 246 KLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPD 321 (966)
T ss_pred cCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchH
Confidence 874 44 788999999999999999999999988776433 57778888889999999999999999999864 33368
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 242 VFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYV 321 (548)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (548)
.|+.+..++-..|+..+|...+.......+. ...+.+.|..++...|.++.|..+|....+.. +.-....+.|...|-
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYK 399 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHH
Confidence 9999999999999999999999999987533 46778899999999999999999999999873 334568899999999
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 322 RAGEPQKAESILTSMRKYGVHPNV-VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (548)
++|++++|+..++++++ +.|+. .+|+.++..|-..|+.+.|++.+.+++..+ |.-....+.|...|-..|+..+|+
T Consensus 400 qqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred hcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHH
Confidence 99999999999999998 56775 489999999999999999999999999864 334578999999999999999999
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 008925 401 ELLQVMEEKGVRPKKS-TIQLVADSWR 426 (548)
Q Consensus 401 ~~~~~~~~~~~~p~~~-~~~~l~~~~~ 426 (548)
.-+++.++ ++||.. .+..++.++.
T Consensus 477 ~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 477 QSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 99999987 567754 6666666554
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=7.2e-22 Score=200.53 Aligned_cols=259 Identities=12% Similarity=0.049 Sum_probs=198.7
Q ss_pred cCCHHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHH
Q 008925 183 YGETYRAEQMLFEMQNNQ-V-RPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVD 260 (548)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 260 (548)
.+.+++|.+.|+...+.+ . +.....+..+...+...|++++|+..|++.++.. +.....|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467888999998888754 1 2245667778888888999999999999988754 344668888888888899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 008925 261 KALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYG 340 (548)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (548)
..++.+.+..+ .+...+..+...+...|++++|...|++.++.. +.+...+..+..++.+.|++++|+..|++.++..
T Consensus 386 ~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 386 EDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99998887653 357788888888899999999999999988875 5567778888888899999999999999888752
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-----H-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008925 341 VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL-----K-TYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK 414 (548)
Q Consensus 341 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 414 (548)
+.+...++.++..+...|++++|++.|+++++..-..+. . .+...+..+...|++++|..++++.++. .|+
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~ 540 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPE 540 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 334667888888899999999999999998875311111 1 1222223344468899999999988774 354
Q ss_pred HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 415 KS-TIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 415 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
.. .+..++.++.+.|++++|+++++++.+..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 43 6778889999999999999999998866543
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=2.1e-21 Score=197.12 Aligned_cols=256 Identities=12% Similarity=0.002 Sum_probs=197.6
Q ss_pred CCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008925 149 NSIEEAWNVVYKMVASG--IQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMR 226 (548)
Q Consensus 149 g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 226 (548)
+++++|.+.|++.++.+ .+.....+..+...+...|++++|+..+++.++..+. +...+..+..++...|++++|+.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 45778888888888764 1234566788888888899999999999988876432 46677788888888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 008925 227 FLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI 306 (548)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (548)
.|+++++.. +.+...|..+...+...|++++|...++...+..+ .+...+..+..++.+.|++++|+..++++++..
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 999888764 55678888888889999999999999998888753 356677778888889999999999999888764
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 008925 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVV------MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL 380 (548)
Q Consensus 307 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (548)
+.+...++.++.++...|++++|+..|++........+.. .++..+..+...|++++|..+++++++.. +.+.
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~ 542 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECD 542 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcH
Confidence 5567788888889999999999999999888753211111 12222233444688999999999988765 4455
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
..+..++..+...|++++|+.+|++..+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 67888889999999999999999888764
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.5e-21 Score=201.50 Aligned_cols=476 Identities=13% Similarity=0.042 Sum_probs=299.7
Q ss_pred cccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 5 VGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAM 84 (548)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 84 (548)
...|++++|+..|+.+++..+. +..++..|+..+...|++++|+..+++..+. .|+...+..++..+ +++++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHH
Confidence 3459999999999999998765 5788999999999999999999999999986 34433333333222 8889999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHH--------HhccCChHHHHHHHHHhhhCCCCCCCHHHHHHH-HHHHHhCCCHHHHH
Q 008925 85 KIFQKMKDSGCKPTTSTYNTLIKG--------YGNVGKPEESLKLLQLMSQDKNVKPNDRTYNIL-VRAWCSKNSIEEAW 155 (548)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~ 155 (548)
.+++++.... +-+..++..+... |.+.++..++++ .... ...|+....... ...|...+++++|+
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~-~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATF-AASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----Hhhh-CCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 9999998763 2334555555444 544433333333 2111 122334333333 67777777777777
Q ss_pred HHHHHHHHCCC------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC
Q 008925 156 NVVYKMVASGI------------------------------QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR-PN 204 (548)
Q Consensus 156 ~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 204 (548)
+.+.++.+.+. ..+...+..++..|.+.|+.++|.++++++...... |.
T Consensus 203 ~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 203 TLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 77777766641 123333445555566666666666666665332111 11
Q ss_pred HHHH------------------------------HHHHHH----------------------------------------
Q 008925 205 ERTC------------------------------GIIVSG---------------------------------------- 214 (548)
Q Consensus 205 ~~~~------------------------------~~l~~~---------------------------------------- 214 (548)
..++ ..++..
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 0000 000111
Q ss_pred -----------------------HHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCC---hhhHHHH----
Q 008925 215 -----------------------YCKEGNMEDAMRFLYRMKELE--VHPNLVVFNSLIKGFLDIKD---SDGVDKA---- 262 (548)
Q Consensus 215 -----------------------~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~---~~~a~~~---- 262 (548)
..+.|+.++|.++|++..... ...+......++..|...+. ...+..+
T Consensus 363 ~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 363 RLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 122334444444444443310 01122233344455544433 1112111
Q ss_pred ------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 263 ------------------LTLMEEF-GV-KP--DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGY 320 (548)
Q Consensus 263 ------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (548)
....... +. ++ +...+..+..++.. ++.++|...+.+.... .|+......+...+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al 519 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQA 519 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHH
Confidence 1111111 11 23 56677777777766 7888899888888766 35554444555566
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 321 VRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (548)
...|++++|...|+++... +|+...+..++..+.+.|+.++|..+++++++.. +++...+..+...+...|++++|.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 7889999999999887664 4555566677778888899999999999988764 444444445555556679999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC------------cchhHHHHHHHh-hcccc
Q 008925 401 ELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPN------------KKDEIAVESIHR-KQNLS 467 (548)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~-~~~~~ 467 (548)
..+++.++. .|+...+..++.++.+.|++++|+..++++.+.+|..+. ...+.+...+.+ +...|
T Consensus 597 ~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 597 NDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999988874 567778888888899999999999999999888877651 122333333333 44566
Q ss_pred ccccccccccccccccCCCChhhhhhhhhhccc
Q 008925 468 ASNSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS 500 (548)
Q Consensus 468 ~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~ 500 (548)
.++..+..+|.+|...|++++|+...++.+...
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 777888889999999999999999888887666
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=6.4e-21 Score=192.77 Aligned_cols=360 Identities=7% Similarity=0.028 Sum_probs=275.1
Q ss_pred HHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChH
Q 008925 39 LTRQKRFKSILSLISKVEKDG--MKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPE 116 (548)
Q Consensus 39 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 116 (548)
+.++.+++..--.|+...+.- -..+..-...++..+.+.|++++|+.+++..+... +-+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 445667776655555543220 01122334455667788999999999999988763 334566667777778899999
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008925 117 ESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEM 196 (548)
Q Consensus 117 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 196 (548)
+|+..++++.... |.+...+..+...+...|++++|+..++++.+.. +.+...+..++..+...|++++|...++.+
T Consensus 94 ~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 94 AVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 9999999998753 5566788888889999999999999999998864 445778888899999999999999999888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHH
Q 008925 197 QNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVV 276 (548)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 276 (548)
....+. +...+..+ ..+...|++++|...++.+......++...+..++..+...|++++|...++.+.+..+ .+..
T Consensus 171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~ 247 (656)
T PRK15174 171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAA 247 (656)
T ss_pred HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHH
Confidence 766443 33333333 34778899999999999987764334445555667788889999999999999888753 3577
Q ss_pred HHHHHHHHHHhCCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008925 277 TFSTIMDAWSSAGLMGK----CQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVI 352 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 352 (548)
.+..+..++...|++++ |...++++++.. |.+..++..++..+...|++++|...++++.... +.+...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 78888889999999885 788999998875 5667788899999999999999999999988864 22455677788
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 353 SGWCNAVKMQRAMSIYEKMCEIGINPNL-KTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
.++...|++++|+..|+++.+.. |+. ..+..+..++...|++++|...|+++.+.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88999999999999999998763 443 44445677888999999999999998864
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=2e-20 Score=189.20 Aligned_cols=391 Identities=11% Similarity=0.038 Sum_probs=297.4
Q ss_pred cccccCChhhHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEG--HRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV 80 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (548)
++.++.+++.---+|....+.- ...+..-...++..+.+.|+++.|+.+++...... +.+...+..++.++...|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCH
Confidence 3556666766666666554321 11122334556777888999999999999998873 44566677777888889999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYK 160 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (548)
++|+..|+++.... +.+...+..+...+...|++++|+..++++... .+.+...+..++..+...|++++|...++.
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 99999999998863 446778888999999999999999999999875 245677888899999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008925 161 MVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240 (548)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 240 (548)
+.... +.+...+..+ ..+...|++++|...++.+.+....++......++..+.+.|++++|+..++++.... +.+.
T Consensus 170 ~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~ 246 (656)
T PRK15174 170 QAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGA 246 (656)
T ss_pred HHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 87764 2333444333 3478899999999999998876544455555666778889999999999999998865 5567
Q ss_pred HHHHHHHHHHHcCCChhh----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 008925 241 VVFNSLIKGFLDIKDSDG----VDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSIL 316 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (548)
..+..+...+...|++++ |...++.+.+..+ .+...+..+...+...|++++|...++++++.. +.+...+..+
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~L 324 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 888889999999999986 7889998888753 367788899999999999999999999999875 5567788889
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--HH----HHHHHHHH
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHPNVV-MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN--LK----TYETLLWG 389 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~----~~~~l~~~ 389 (548)
..++.+.|++++|...++++... .|+.. .+..+..++...|+.++|...|+++++.. |+ .. ....+-.+
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~--P~~~~~~~~ea~~~~~~~ 400 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR--ASHLPQSFEEGLLALDGQ 400 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--hhhchhhHHHHHHHHHHH
Confidence 99999999999999999999875 35543 34456778889999999999999998753 22 12 23333444
Q ss_pred HHhcCChHHHHHHHHHH
Q 008925 390 YGEAKQPWRAEELLQVM 406 (548)
Q Consensus 390 ~~~~g~~~~A~~~~~~~ 406 (548)
+...+...+....+.+.
T Consensus 401 ~~~~~~~~~~~~W~~~~ 417 (656)
T PRK15174 401 ISAVNLPPERLDWAWEV 417 (656)
T ss_pred HHhcCCccchhhHHHHH
Confidence 44455554443444444
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=8.3e-22 Score=190.35 Aligned_cols=296 Identities=13% Similarity=0.121 Sum_probs=148.2
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhCCC
Q 008925 73 ACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPN--DRTYNILVRAWCSKNS 150 (548)
Q Consensus 73 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 150 (548)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+.......+. ...+..++..+...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4456666677777777766653 234456666666666667777777666666543211111 1345556666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 008925 151 IEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNE----RTCGIIVSGYCKEGNMEDAMR 226 (548)
Q Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 226 (548)
+++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666666542 334555666666666666666666666666554332211 123334445555556666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 008925 227 FLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI 306 (548)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (548)
.|+++.+.. +.+...+..++..+...|++++|.+.++++.+.++.....++..++.+|...|++++|...++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 655555432 22233444444444555555555555554444322211233344444444444444444444444443
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---cCChHHHHHHHHHHHHcC
Q 008925 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN---AVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 307 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~ 375 (548)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+++++.+.+
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 233333344444444444444444444444432 2444444444433332 234444444444444433
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=7.6e-20 Score=189.08 Aligned_cols=408 Identities=10% Similarity=0.015 Sum_probs=286.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
+.....-.+.+....|+.++|++++.++.... +.+...+..+...+...|++++|..+|++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44445556667777888888888888887632 4456668888888888888888888888887752 345667778888
Q ss_pred HHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 008925 108 GYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETY 187 (548)
Q Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 187 (548)
++...|++++|+..++++... .+.+.. +..+..++...|+.++|+..++++.+.. +.+...+..++.++...+..+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 888888888888888888765 244555 7778888888888888888888888874 345566666777788888888
Q ss_pred HHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HH----HHHH
Q 008925 188 RAEQMLFEMQNNQVRPNE------RTCGIIVSGYC-----KEGNM---EDAMRFLYRMKEL-EVHPNLV-VF----NSLI 247 (548)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~l~ 247 (548)
+|++.++.+.. .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ...+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 88888876553 1221 01111222221 12234 6778888887753 1122221 11 1113
Q ss_pred HHHHcCCChhhHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHH
Q 008925 248 KGFLDIKDSDGVDKALTLMEEFGVK-PDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPD----IHVFSILAKGYVR 322 (548)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 322 (548)
..+...+++++|+..|+.+.+.+.+ |+. ....+..++...|++++|+..|+++.+.. +.+ ......+..++..
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHh
Confidence 3445668888999999888876532 322 22235678888899999999998887653 111 3455666777888
Q ss_pred cCCHhHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 323 AGEPQKAESILTSMRKYGV-----------HPN---VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLW 388 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (548)
.|++++|..+++.+..... .|+ ...+..++..+...|+.++|+++++++.... |.+...+..++.
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 8999999999888876421 122 1244566777888899999999999988764 667788888888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 389 GYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
.+...|++++|+..++++++. .|+ ...+...+..+...|++++|+.+++++.+..|..+
T Consensus 402 l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 898999999999999988874 465 44666777788888999999999999887776655
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2.5e-21 Score=186.98 Aligned_cols=302 Identities=14% Similarity=0.109 Sum_probs=167.1
Q ss_pred HHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 008925 107 KGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD---AVTYNTLARAYAQY 183 (548)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 183 (548)
..+...|++++|+..|+++.+.. +.+..++..++..+...|++++|..+++.+...+..++ ..++..++..|...
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34456677777777777776542 33455666677777777777777777777665421111 23455666666677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChhhH
Q 008925 184 GETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPN----LVVFNSLIKGFLDIKDSDGV 259 (548)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 259 (548)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 77777777777666542 22455666666666667777777777666665432111 11233444555555666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 008925 260 DKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKY 339 (548)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (548)
...++++.+..+ .+...+..++..+...|++++|..+++++.+.+......+++.++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666665555431 2334445555555556666666666665554421111234455555555556666666665555553
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHH
Q 008925 340 GVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE---AKQPWRAEELLQVMEEKGVRPKKS 416 (548)
Q Consensus 340 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 416 (548)
.|+...+..++..+.+.|++++|..+++++++. .|+..++..++..+.. .|+.++++..+++|.+.++.|++.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 244444455555555556666666666555553 3555555555544442 335555555555555544444443
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=1.5e-19 Score=186.81 Aligned_cols=409 Identities=12% Similarity=0.066 Sum_probs=312.6
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
+..-.|+.++|+++|..+.... +.+...+..++..+...|++++|.+++++.++.. |.+...+..+...+...|++++
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 4567899999999999998743 3355678999999999999999999999998863 5567778888899999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.... |.+...+..+..++...+..++|++.+++..
T Consensus 102 A~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 102 ALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 999999998873 44566 8889999999999999999999998852 4566677778888889999999999998765
Q ss_pred HCCCCCCH------HHHHHHHHHHHh-----cCCH---HHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHhcCCHH
Q 008925 163 ASGIQPDA------VTYNTLARAYAQ-----YGET---YRAEQMLFEMQNN-QVRPNER-TC----GIIVSGYCKEGNME 222 (548)
Q Consensus 163 ~~~~~~~~------~~~~~l~~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~ 222 (548)
. .|+. .....+++.... .+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|+++
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 4 2221 112222333221 2234 6788888888754 1222221 11 11133456779999
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCChhHHHHHH
Q 008925 223 DAMRFLYRMKELEVH-PNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKP---DVVTFSTIMDAWSSAGLMGKCQEIF 298 (548)
Q Consensus 223 ~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (548)
+|+..|+++.+.+.+ |+ .....+...|...|++++|...++.+.+..+.. .......+..++...|++++|..++
T Consensus 255 eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999886522 22 222335778999999999999999987754221 1345566777889999999999999
Q ss_pred HHHHHcCC-----------CCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 008925 299 DDMVKAGI-----------EPD---IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRA 364 (548)
Q Consensus 299 ~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 364 (548)
+.+..... .|+ ...+..++..+...|++++|+.+++++.... +.+...+..++..+...|++++|
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 99987631 122 2356677889999999999999999998863 44567889999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008925 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSW 425 (548)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (548)
++.++++++.. |.+...+..++..+...|++++|...++++++. .|+......+-..+
T Consensus 413 ~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 413 ENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999975 556778888888999999999999999999984 67777555544433
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=9.9e-19 Score=177.13 Aligned_cols=435 Identities=12% Similarity=0.030 Sum_probs=325.1
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
..++|+++.|++.|+++++..+.-....+ .++..+...|+.++|+..+++.... .+........+...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 56899999999999999987544212334 7888888889999999999999832 233344555556788899999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008925 84 MKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVA 163 (548)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 163 (548)
+++|+++.+.. +.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999874 345677788889999999999999999999765 56666665555555556677679999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH------HHHHHHH---H--hcCC---HHHHHHHHH
Q 008925 164 SGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTC------GIIVSGY---C--KEGN---MEDAMRFLY 229 (548)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~g~---~~~A~~~~~ 229 (548)
.. |.+...+..+.....+.|-...|.++.++-.+. +.+....+ ...+..- . ...+ .+.|+.-++
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 85 556778888899999999999998877653321 11111100 0111100 0 1122 344555555
Q ss_pred HHHhCC--CCCCHH----HHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 008925 230 RMKELE--VHPNLV----VFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVK 303 (548)
Q Consensus 230 ~~~~~~--~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (548)
.+...- .|+... ...-.+.++...+++.++++.++.+...+.+....+-..+.++|...+++++|..+++.+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 555421 122212 22234567788899999999999999887665567888999999999999999999999976
Q ss_pred cC-----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-------------CCCHH-HHHHHHHHHhccCChHHH
Q 008925 304 AG-----IEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGV-------------HPNVV-MFTTVISGWCNAVKMQRA 364 (548)
Q Consensus 304 ~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~p~~~-~~~~l~~~~~~~g~~~~A 364 (548)
.. .+++......|.-+|...+++++|..+++.+.+... .||-. .+..++..+...|+..+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 43 123444467889999999999999999999987321 12222 334456778889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
++.++++.... |-|......+...+...|.+.+|...++.+... .|+.. +....+.+....|++++|..+.++..+
T Consensus 436 e~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 436 QKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999998876 789999999999999999999999999777653 56644 677788899999999999999999988
Q ss_pred ccCCCC
Q 008925 444 DRQSMP 449 (548)
Q Consensus 444 ~~~~~~ 449 (548)
..|..+
T Consensus 513 ~~Pe~~ 518 (822)
T PRK14574 513 RSPEDI 518 (822)
T ss_pred hCCCch
Confidence 877665
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.3e-18 Score=179.85 Aligned_cols=235 Identities=11% Similarity=0.066 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 204 NERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMD 283 (548)
Q Consensus 204 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (548)
+...+..+..++.. +++++|+..+.+..... |+......+...+...|++++|...++.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 34455555555554 66667777666665542 44433333444445777777777777776554 233334555666
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 008925 284 AWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQR 363 (548)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 363 (548)
++...|++++|...++.+++.+ +++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 6777777777777777777664 333334444444444557788888888777764 4566677777777777888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
|+..|+++++.. |.+...+..+..++...|++++|+..+++..+. .|+ ...+..++.++...|++++|+..++++.
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888888877765 556667777777777778888888888777764 343 4467777777788888888888888777
Q ss_pred hccCCCC
Q 008925 443 EDRQSMP 449 (548)
Q Consensus 443 ~~~~~~~ 449 (548)
+..|...
T Consensus 705 ~l~P~~a 711 (987)
T PRK09782 705 DDIDNQA 711 (987)
T ss_pred hcCCCCc
Confidence 6665543
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.9e-19 Score=174.45 Aligned_cols=437 Identities=13% Similarity=0.079 Sum_probs=304.5
Q ss_pred ccccCChhhHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRP--TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVD 81 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 81 (548)
+.-.|+++.+..+...+....... -..+|..+++++...|++++|...|.+..+.....-...+..|...|++.|+++
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle 359 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLE 359 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHH
Confidence 345677777777777776653221 124577777777777777777777777766531111334556677777777777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC----ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 008925 82 EAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVG----KPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNV 157 (548)
Q Consensus 82 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 157 (548)
.+...|+...... +.+..+...|...|...+ ..++|..++.+.... .+.|...|..+...+....-+.. +.+
T Consensus 360 ~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~~~s-L~~ 435 (1018)
T KOG2002|consen 360 ESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDPWAS-LDA 435 (1018)
T ss_pred HHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcChHHH-HHH
Confidence 7777777776652 334556666666666554 456666666666554 35566677777766655444333 666
Q ss_pred HHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHhcCCHHHH
Q 008925 158 VYKMV----ASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNN---QVRPNE------RTCGIIVSGYCKEGNMEDA 224 (548)
Q Consensus 158 ~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A 224 (548)
|..+. ..+.++.+...|.++..+...|++.+|...|+..... ...++. .+-..+..++-..++++.|
T Consensus 436 ~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A 515 (1018)
T KOG2002|consen 436 YGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVA 515 (1018)
T ss_pred HHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHH
Confidence 65543 3444567777888888888888888888888776654 122222 2334455566666788888
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 008925 225 MRFLYRMKELEVHPN-LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVK 303 (548)
Q Consensus 225 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (548)
.+.|..+... .|+ +..|..++......+...+|...++.....+ ..++..++.+...+.....+..|..-|..+.+
T Consensus 516 ~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 516 EEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred HHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 8888887764 244 3445455444445567777888888777654 34566677777788888888888887766664
Q ss_pred cC-CCCCHHHHHHHHHHHHH------------cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 008925 304 AG-IEPDIHVFSILAKGYVR------------AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEK 370 (548)
Q Consensus 304 ~~-~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 370 (548)
.- ..+|+.+...|+..|.. .+..++|+++|.++++.. +.|...-|.++-.++..|++.+|..+|.+
T Consensus 593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHH
Confidence 31 23577777777776553 234678999999998864 34677788899999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 371 MCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK-GVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
..+.. ..+..+|..++.+|...|++..|++.|+...+. .-..+..++..|+.++.+.|.+.+|.+.+..+....|..+
T Consensus 672 VrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 672 VREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT 750 (1018)
T ss_pred HHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence 99875 346678999999999999999999999998754 3344677999999999999999999999999987776655
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=6.4e-18 Score=171.29 Aligned_cols=439 Identities=15% Similarity=0.097 Sum_probs=320.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDS--ILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
.+...-+-...+.|+++.|++.|+++.+.. |+. ..+ .++..+...|+.++|+..+++..... +........++.
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ 110 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAAR 110 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHH
Confidence 333444555678999999999999999863 442 334 88888889999999999999998321 223444445577
Q ss_pred HHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 008925 108 GYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETY 187 (548)
Q Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 187 (548)
.+...|++++|+++|+++.+.. |.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 8999999999999999998863 455677778888999999999999999999886 566666655555555567776
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH------HHHHHHH-----HcCCCh
Q 008925 188 RAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVF------NSLIKGF-----LDIKDS 256 (548)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~l~~~~-----~~~~~~ 256 (548)
+|++.++++.+..+. +...+..+..++.+.|-...|.++..+-...- .+....+ ..++..- ....++
T Consensus 187 ~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 187 DALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 799999999998544 77888888899999999999998877644321 1111111 1111100 112334
Q ss_pred hhHHHHHHHH---HHc-CCCCC-H----HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 008925 257 DGVDKALTLM---EEF-GVKPD-V----VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQ 327 (548)
Q Consensus 257 ~~a~~~~~~~---~~~-~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (548)
..+.+.+..+ ... +..|. . ....-.+-++...++..++++.|+.+...+.+....+-..++.+|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 4444444443 331 11132 1 1222345577899999999999999998875556668889999999999999
Q ss_pred HHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-----------CCC--H-HHHHHHHH
Q 008925 328 KAESILTSMRKYG-----VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI-----------NPN--L-KTYETLLW 388 (548)
Q Consensus 328 ~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~--~-~~~~~l~~ 388 (548)
+|+.+++.+.... ..++......|..++...+++++|..+++++.+... .|| - ..+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 9999999997642 122333457889999999999999999999997310 122 2 23445677
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccc
Q 008925 389 GYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSA 468 (548)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 468 (548)
.+...|+..+|++.++++.... +-|......+++++...|.+.+|++.++.+... .|.
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l---------------------~P~ 482 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL---------------------APR 482 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh---------------------CCc
Confidence 8889999999999999998642 345668889999999999999999999875433 344
Q ss_pred cccccccccccccccCCCChhhhhhhhhhccc
Q 008925 469 SNSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS 500 (548)
Q Consensus 469 ~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~ 500 (548)
+....+.++.++...++|.+|.++.+.+.+..
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 55666778888888899999988887775555
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.6e-18 Score=168.14 Aligned_cols=405 Identities=13% Similarity=0.122 Sum_probs=262.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMK--PDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT--TSTYN 103 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~ 103 (548)
++++.+.|...+.-.|+++.++.+...+...... .-+..|..+..+|-..|++++|...|.+..+.. ++ ...+-
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~ 346 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLV 346 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccccc
Confidence 4455566666666666666666666666544211 112245566666666666666666666665542 22 23334
Q ss_pred HHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008925 104 TLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKN----SIEEAWNVVYKMVASGIQPDAVTYNTLARA 179 (548)
Q Consensus 104 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 179 (548)
.+.+.+.+.|+++.+...|+.+... .|.+..+...|+..|...+ ..+.|..++.+..+.- +.|...|..+...
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 4566666666666666666666554 2344455555555555553 3455666666555543 4456666666555
Q ss_pred HHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC------CCHHHHHHH
Q 008925 180 YAQYGETYRAEQMLFEMQ----NNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL---EVH------PNLVVFNSL 246 (548)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~------~~~~~~~~l 246 (548)
+.... ...++.+|..+. ..+..+.+...|.+...+...|++.+|...|...... ... +++.+-..+
T Consensus 424 ~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 54433 333355555432 3344456677777777777888888888887777654 111 222234445
Q ss_pred HHHHHcCCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008925 247 IKGFLDIKDSDGVDKALTLMEEFGVKPD-VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGE 325 (548)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (548)
...+-..++++.|.+.+..+.+.. |. ...|..++......+...+|...+..++..+ ..++.+++.++..+.+...
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 555566677777888888777653 32 3334444433344567778888888887765 6677788888888888888
Q ss_pred HhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhc------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 326 PQKAESILTSMRKYG-VHPNVVMFTTVISGWCN------------AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 326 ~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
+..|.+-|+.+.+.- ..+|+.+..+|+..|.. .+..++|+++|.++++.. |-|...-+.++-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 888888777666531 23577777777775542 345788999999998875 6778888889899999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 393 AKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
.|++.+|..+|.+..+.. .-...+|.+++.+|..+|++..|+++|+....
T Consensus 659 kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred ccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988753 23456888999999999999999999998763
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=1.9e-17 Score=147.34 Aligned_cols=417 Identities=12% Similarity=0.119 Sum_probs=251.3
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPT----LITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESG 78 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 78 (548)
+++++..+.+|+++|+-++..-+..+ ....+.++..+.+.|.++.|+..|+.+.+. .|+-.+-..|+-++...|
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~ 323 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG 323 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC
Confidence 45555666666666666555422111 123444455555666666666666666553 455444444444555556
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHH--------HHHHHHHhcc-----------CChHHHHHHHHHhhhCCCCCCCHH---
Q 008925 79 NVDEAMKIFQKMKDSGCKPTTSTY--------NTLIKGYGNV-----------GKPEESLKLLQLMSQDKNVKPNDR--- 136 (548)
Q Consensus 79 ~~~~A~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~--- 136 (548)
+.++..+.|.+|+.....||..-| ..|+.--.+. .+.++++-.-.++.. .-+.|+-.
T Consensus 324 d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia-pvi~~~fa~g~ 402 (840)
T KOG2003|consen 324 DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA-PVIAPDFAAGC 402 (840)
T ss_pred cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc-cccccchhccc
Confidence 666666666666554334443311 1111111110 011111111111111 00111110
Q ss_pred HH------------------HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 008925 137 TY------------------NILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQ--YGETYRAEQMLFEM 196 (548)
Q Consensus 137 ~~------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~ 196 (548)
.| ..-...+.+.|+++.|+++++-+.+..-..-...-+.|...+.. -.++..|.++-+..
T Consensus 403 dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a 482 (840)
T KOG2003|consen 403 DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA 482 (840)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence 00 01112345566666666666655543222222222333222222 23455555555544
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHH
Q 008925 197 QNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVV 276 (548)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 276 (548)
+... .-++.....-.......|++++|.+.+++.+..+.. -......+...+-..|+.++|+..|-.+... +..+..
T Consensus 483 ln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~e 559 (840)
T KOG2003|consen 483 LNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAE 559 (840)
T ss_pred hccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHH
Confidence 4321 113333333334445578999999999998875422 2233334445567788999999888776554 234677
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWC 356 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 356 (548)
.+..+...|....+..+|++++.+.... ++.|+.+.+.|...|-+.|+-..|.+.+-.--+. ++-+..+...|...|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHH
Confidence 7888888999999999999999888766 4778999999999999999999998877655443 4567788888888899
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008925 357 NAVKMQRAMSIYEKMCEIGINPNLKTYETLLW-GYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGL 430 (548)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 430 (548)
...-+++|+.+|+++.- +.|+..-|..++. ++.+.|++++|.++++...+. ++-+...+..+++.+...|.
T Consensus 638 dtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 98999999999999876 4899999988765 456789999999999998764 56677788888888888874
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=4.2e-15 Score=138.44 Aligned_cols=417 Identities=12% Similarity=0.053 Sum_probs=244.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHH
Q 008925 59 GMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT--TSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDR 136 (548)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 136 (548)
|+..+...|..=...|-..|..-.+..+....+..|+... ..+|..-...|.+.+.++-|..+|....+. ++.+..
T Consensus 474 gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~s 551 (913)
T KOG0495|consen 474 GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKS 551 (913)
T ss_pred ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhH
Confidence 3333333343333344444444444444444433333221 234555555555555566666666665553 344445
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008925 137 TYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYC 216 (548)
Q Consensus 137 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 216 (548)
.|......--..|..++...+|++++..- +-....|......+...|+...|..++..+.+..+. +...|..-+..-.
T Consensus 552 lWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~ 629 (913)
T KOG0495|consen 552 LWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh
Confidence 55555555555566666666666666542 333444555556666667777777776666665444 5566666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 008925 217 KEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQE 296 (548)
Q Consensus 217 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 296 (548)
...+++.|..+|.+.... .|+...|.--+....-.+..++|.++++..++.- +.-...|..+.+.+-+.++.+.|..
T Consensus 630 en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred ccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHH
Confidence 666777777777666653 3555555555555555666667777766666542 2223455566666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 008925 297 IFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI 376 (548)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 376 (548)
.|..-.+. +|-.+..|..|...--+.|.+-+|..+++.....+ +.+...|...+..=.+.|+.+.|..+..++++. +
T Consensus 707 aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-c 783 (913)
T KOG0495|consen 707 AYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-C 783 (913)
T ss_pred HHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 66655544 23344455666666666667777777777666553 235556666677667777777777777766654 3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHH
Q 008925 377 NPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIA 456 (548)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 456 (548)
|.+...|..-+....+.++-.++...+++. ..|+..+..++..+....+++.|.+.|+++...++
T Consensus 784 p~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~---------- 848 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP---------- 848 (913)
T ss_pred CccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC----------
Confidence 555556666666666655544444444332 34566677778888888888888888888764443
Q ss_pred HHHHHhhccccccccccccccccccccCCCChhhhhhhhhhccc---ccccchhhhhH
Q 008925 457 VESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS---DTVWTATKSLF 511 (548)
Q Consensus 457 ~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~---g~~w~~~~~~~ 511 (548)
..+.++.-+-.++...|.-++-.+++.+...-. |..|..+-..+
T Consensus 849 -----------d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 849 -----------DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDI 895 (913)
T ss_pred -----------ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhH
Confidence 333334444455666777777778877776555 99998776543
No 29
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.1e-14 Score=130.60 Aligned_cols=430 Identities=13% Similarity=0.072 Sum_probs=333.1
Q ss_pred ccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 6 GKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMK 85 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 85 (548)
.++++..|..+|+.++.... .+...|...+..-.+......|..+++..... +|.-...|...+..=-..|+...|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 46788999999999998764 47788998999999999999999999999875 33334577777777778999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 008925 86 IFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASG 165 (548)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 165 (548)
+|++-.+. .|+..+|.+.+..-.+...++.|..+|++..- +.|++.+|.-.++.-.+.|....+..+|+.+++.-
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 99999885 79999999999999999999999999999876 57999999999999999999999999999987641
Q ss_pred C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH--------HHHHHhC
Q 008925 166 I--QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPN-ERTCGIIVSGYCKEGNMEDAMRF--------LYRMKEL 234 (548)
Q Consensus 166 ~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~--------~~~~~~~ 234 (548)
- ..+...+.++...-.++..++.|.-+|+-.++.-+... ...|......--+-|+....... +++.++.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 0 11234455566666677889999999999888643322 33444444333445554333322 4455554
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHH--HHHHHH-----HHH---HhCCChhHHHHHHHHHHHc
Q 008925 235 EVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVV--TFSTIM-----DAW---SSAGLMGKCQEIFDDMVKA 304 (548)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~-----~~~---~~~~~~~~a~~~~~~~~~~ 304 (548)
+ +-|-.+|--.+..-...|+.+...++++..+.. ++|-.. .|...+ -++ ....+.+.+.++|+..++.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3 667788888888888899999999999999876 344321 111111 111 3568999999999999985
Q ss_pred CCCCCHHHHHH----HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 008925 305 GIEPDIHVFSI----LAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL 380 (548)
Q Consensus 305 ~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (548)
+|-...|+.- ......++.++..|.+++..++. .-|...+|...|..=.+.++++.+..+|++.++.+ |-|-
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhh
Confidence 3444445443 34445678899999999998875 56888999999999999999999999999999987 6678
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.+|...+..-...|+.+.|..+|+-+++.+..-- ...|...++.-...|.++.|..++++.++..+..
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 8999999888999999999999999987432212 2367777777788999999999999999766554
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=7.2e-16 Score=137.45 Aligned_cols=391 Identities=15% Similarity=0.175 Sum_probs=276.1
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC------------CCCHHHHHHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGM------------KPDSILFNAM 70 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------~~~~~~~~~l 70 (548)
++.+.|+++.|+..|+.+.+. .|+..+-..|+-++...|+-++..+.|.+|..... .|+....+..
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 478899999999999999986 47776656666677778999999999999975321 2333333332
Q ss_pred HH-----HHHhcC--ChHHHHHHHHHHHhcCCCCCHH-----H--------H--------HHHHHHHhccCChHHHHHHH
Q 008925 71 IN-----ACSESG--NVDEAMKIFQKMKDSGCKPTTS-----T--------Y--------NTLIKGYGNVGKPEESLKLL 122 (548)
Q Consensus 71 ~~-----~~~~~g--~~~~A~~~~~~~~~~~~~~~~~-----~--------~--------~~l~~~~~~~g~~~~A~~~~ 122 (548)
+. -.-+.+ +.++++-.--+++..-+.|+-. + + ..-..-|.+.|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 21 111111 2223332222222222222211 0 0 11123467889999999999
Q ss_pred HHhhhCCCCCCCHHHHHHHHHH-HH-hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008925 123 QLMSQDKNVKPNDRTYNILVRA-WC-SKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQ 200 (548)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~-~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 200 (548)
+-+.+......+ ..-+.|... |. .-.++..|.++-+..+... .-+......-.......|++++|.+.|++.+...
T Consensus 443 kv~~~kdnk~~s-aaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 443 KVFEKKDNKTAS-AAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHhccchhhH-HHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 888654322222 222233222 22 2347888888887776543 3345555555555667899999999999998763
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 008925 201 VRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFST 280 (548)
Q Consensus 201 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.. -...+..+.-.+-..|+.++|+.+|-++... ...+..+...+...|-...+...|++++.+.... ++.|+..+..
T Consensus 521 as-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 521 AS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred hH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 22 2233334455677889999999999887653 2356778888889999999999999999888776 4668999999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccC
Q 008925 281 IMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGW-CNAV 359 (548)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g 359 (548)
|...|-+.|+-.+|.+.+-.-.+. ++.+..+...|...|....-+++|+.+|++..- +.|+..-|..++..| .+.|
T Consensus 598 l~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcc
Confidence 999999999999999987766554 478899999999999999999999999998876 579999998777655 5789
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008925 360 KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQV 405 (548)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (548)
++.+|..+|+..... +|.|...+..|++.+...|.. ++.++-++
T Consensus 675 nyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~-d~key~~k 718 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK-DAKEYADK 718 (840)
T ss_pred cHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch-hHHHHHHH
Confidence 999999999999875 588999999999999888853 34444433
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=1.8e-14 Score=139.50 Aligned_cols=434 Identities=13% Similarity=0.125 Sum_probs=288.5
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
+...|++++|..++.++++..+. +...|..|+.+|-++|+.+++...+-.+-... |-|...|..+.....+.|++++|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 44569999999999999998755 77899999999999999999999877665553 55778999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCC-HH----HHHHHHHHHHhCCCHHHHHHHH
Q 008925 84 MKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPN-DR----TYNILVRAWCSKNSIEEAWNVV 158 (548)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~----~~~~l~~~~~~~g~~~~a~~~~ 158 (548)
.-+|.++++.. +++...+-.-+..|-+.|+...|...|.++.+.. +|. .. .--..++.+...++.+.|++.+
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999975 4566666667788999999999999999998753 222 22 2233456677778889999999
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---------------------------CCHHHHHH
Q 008925 159 YKMVASG-IQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR---------------------------PNERTCGI 210 (548)
Q Consensus 159 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------------------------~~~~~~~~ 210 (548)
+.....+ -..+...++.++..+.+...++.+............. ++..++ .
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-R 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-h
Confidence 8887732 1345567788888888888888888877766552111 111221 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 008925 211 IVSGYCKEGNMEDAMRFLYRMKELE--VHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSA 288 (548)
Q Consensus 211 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 288 (548)
+.-++......+....+........ +..+...+.-+..++.+.|++.+|..++..+......-+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 1222333333333333333343333 22344667777788888888888888888777765444566777788888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHhccCC
Q 008925 289 GLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK--------YGVHPNVVMFTTVISGWCNAVK 360 (548)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~p~~~~~~~l~~~~~~~g~ 360 (548)
|..+.|.+.|..++... |.+..+-..|...+.+.|+.++|.+.++.+.. .+..|+..........+...|+
T Consensus 463 ~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 88888888888887764 55566667777778888888888888777542 1223333333334444555555
Q ss_pred hHHHHHHHHHHHHcC-----C---------------------------------------------CC-----------C
Q 008925 361 MQRAMSIYEKMCEIG-----I---------------------------------------------NP-----------N 379 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~-----~---------------------------------------------~~-----------~ 379 (548)
.++-+.+-..|+... + .+ +
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence 554333333332210 0 00 0
Q ss_pred H----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHH---HHH-HHHHHHHHcCCHHHHHHHHHHHHhc
Q 008925 380 L----KTYETLLWGYGEAKQPWRAEELLQVMEEKGVR-PKKS---TIQ-LVADSWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 380 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~---~~~-~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (548)
. ..+..++..+.+.+++++|+.+...+.+..+- -+.. .+. ..+.+....+++.+|...++.+...
T Consensus 622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 0 12344556667777777777777777654322 2222 222 2345556777777887777777766
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.80 E-value=3.4e-14 Score=132.48 Aligned_cols=474 Identities=12% Similarity=0.025 Sum_probs=360.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 008925 15 YIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSG 94 (548)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 94 (548)
++++.+++. ++.++..|... ....+.+.|+-++.+..+. ++.+...|. +|++..-++.|.+++++..+.
T Consensus 367 RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~- 435 (913)
T KOG0495|consen 367 RVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI- 435 (913)
T ss_pred HHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-
Confidence 445555554 22244444433 3344566677777777765 344444443 455666778888888888876
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhh---hCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--
Q 008925 95 CKPTTSTYNTLIKGYGNVGKPEESLKLLQLMS---QDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD-- 169 (548)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 169 (548)
++.+...|.+....--..|..+...+++.+-. +..|+.-+...|..-...|-..|..-.+..+....+..|+...
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 66778888887777778888888888877653 2356677777888888888888888888888888887776533
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 170 AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKG 249 (548)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (548)
..||..-...|.+.+.++-|..+|...++-.+ -+...|......--..|..+.-..+|+++... .+.....|......
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 56788888899999999999999998887633 36667777776666788999999999999875 35667888888888
Q ss_pred HHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 008925 250 FLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKA 329 (548)
Q Consensus 250 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 329 (548)
+-..|+...|..++..+.+..+. +...|..-+........++.|..+|.+.... .|+..+|.--+....-.++.++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 88999999999999998887644 6678888888888999999999999998875 57788887777777788999999
Q ss_pred HHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 330 ESILTSMRKYGVHPNV-VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 330 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
++++++.++. -|+. ..|..++..+-+.++.+.|...|..-.+. +|.....|..|.+.--+.|.+-+|..++++..-
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 9999999885 4554 47888999999999999999998887765 466678888888888899999999999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC---C------cchhHHHHHHHhhcccccccccccccccc
Q 008925 409 KGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP---N------KKDEIAVESIHRKQNLSASNSTFLQIPGV 479 (548)
Q Consensus 409 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~------~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 479 (548)
.+ +-+...|...+..-.+.|+.++|..++.++++..|+.- . ..+..-...+-.+.....++-..+..+.+
T Consensus 748 kN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~l 826 (913)
T KOG0495|consen 748 KN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKL 826 (913)
T ss_pred cC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHH
Confidence 54 33455888888999999999999999999998777542 1 11111223444444444466556668888
Q ss_pred ccccCCCChhhhhhhhhhccc---ccccchhh
Q 008925 480 VSSEHNGSSAAKIRSQIVLRS---DTVWTATK 508 (548)
Q Consensus 480 y~~~~~~~~a~~~~~~~~~~~---g~~w~~~~ 508 (548)
+-+..+++.|.+-..+....+ |..|.-+-
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccchHHHHHH
Confidence 989999999999888887776 88887543
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3.8e-15 Score=134.16 Aligned_cols=413 Identities=14% Similarity=0.064 Sum_probs=254.6
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPT-LITYTTLVAALTRQKRFKSILSLISKVEKDGMKPD-SILFNAMINACSESGNV 80 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 80 (548)
-+.++|++++|++.|.++++. .|+ +.-|.....+|...|+|++..+--.+.++. .|+ +..+..-..++-..|++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccH
Confidence 466788888888888888875 455 666778888888888888888877777764 444 44666666777777777
Q ss_pred HHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDS-GCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVY 159 (548)
Q Consensus 81 ~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 159 (548)
++|+.-..-..-. |+. +..+--.+=+.+-+.+. .++.+-+.. ....+-|+.....+....+...- . .
T Consensus 200 ~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a~-~ka~e~~k~--nr~p~lPS~~fi~syf~sF~~~~--~------~ 267 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQ-NASIEPMAERVLKKQAM-KKAKEKLKE--NRPPVLPSATFIASYFGSFHADP--K------P 267 (606)
T ss_pred HHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHHH-HHHHHhhcc--cCCCCCCcHHHHHHHHhhccccc--c------c
Confidence 7775432222111 111 11111111111111111 111111110 12223344443333333221100 0 0
Q ss_pred HHHHCCCCCCHHHHHHHHHHH----Hh-cCCHHHHHHHHHHHHhC---CCCCC---------HHHHHHHHHHHHhcCCHH
Q 008925 160 KMVASGIQPDAVTYNTLARAY----AQ-YGETYRAEQMLFEMQNN---QVRPN---------ERTCGIIVSGYCKEGNME 222 (548)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~----~~-~g~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~g~~~ 222 (548)
.+. .+.......+..++ .. ...+..|.+.+.+-... ....+ ..++...+.-+.-.|+..
T Consensus 268 ~~~----~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 268 LFD----NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred ccc----CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 000 00000111111111 00 01223333322221110 00001 223333334455678889
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 008925 223 DAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMV 302 (548)
Q Consensus 223 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (548)
.|..-|+..++.. +.+...|--+...|....+..+..+.|....+.++. ++.+|..-.....-.+++++|..=|++.+
T Consensus 344 ~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 344 GAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998865 233334777888899999999999999999888643 66778888888888899999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC-----CC
Q 008925 303 KAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG-----IN 377 (548)
Q Consensus 303 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~ 377 (548)
... +.+...|-.+..+..+.+.++++...|++.++. ++.-+..|+-....+..++++++|.+.|+.+++.. +.
T Consensus 422 ~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 422 SLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred hcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 876 566778888888888899999999999999876 44456788999999999999999999999998752 11
Q ss_pred CCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 378 PNLKTYE--TLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 378 ~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
.+...+. .++..- -.+++..|..++.++.+. .|..+ .+..|+....+.|+.++|+++|+++.
T Consensus 500 v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1222222 222211 248889999999999874 56655 88899999999999999999999864
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5.1e-14 Score=126.23 Aligned_cols=367 Identities=12% Similarity=0.043 Sum_probs=261.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHH
Q 008925 60 MKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYN 139 (548)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 139 (548)
...|...+-.....+.+.|..+.|+..|...... .+-.-.+|..|.... .+.+.+..+...+.. ......--
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l~~~l~~----~~h~M~~~ 231 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSILVVGLPS----DMHWMKKF 231 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHHHhcCcc----cchHHHHH
Confidence 3445555555556667788888888888887654 233444555554433 223333222221111 01111112
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHh
Q 008925 140 ILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR--PNERTCGIIVSGYCK 217 (548)
Q Consensus 140 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 217 (548)
-+..++....+.+++++-.+.....|++-+...-+....+.....++++|+.+|+++.+..+- .|..+|+.++-. +
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--K 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--H
Confidence 344566667788888888888888887766666666667778888999999999999887421 245666665533 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 008925 218 EGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEI 297 (548)
Q Consensus 218 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 297 (548)
..+- .+.++-+-...-..-.+.|...+.+-|.-.++.++|...|++..+.++. ....|+.+..-|....+...|.+-
T Consensus 310 ~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 2211 1222222111111344567777888888889999999999999998744 567899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 008925 298 FDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGIN 377 (548)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 377 (548)
++.+++.+ |.|-..|-.|+++|.-.+.+.-|+-+|+++.... +.|...|.+|+.+|.+.++.++|++.|.++...| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99999987 7788899999999999999999999999999863 4478899999999999999999999999999887 5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 378 PNLKTYETLLWGYGEAKQPWRAEELLQVMEEK----G-VRPK-KSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
.+...+..|+..|-+.++..+|..+|++-++. | +.|. .....-++.-+.+.+++++|..+.....
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 56788999999999999999999999887642 2 2231 2233345677788999999988877754
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=5.7e-14 Score=136.05 Aligned_cols=388 Identities=12% Similarity=0.121 Sum_probs=231.1
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHH
Q 008925 39 LTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEES 118 (548)
Q Consensus 39 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 118 (548)
+...|++++|..++.++++.. +.....|..|...|-..|+.+++...+-.+-... +.|...|..+.....+.|.++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 334466666666666666553 4445566666666666666666665555444332 33445566666666666666666
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHH
Q 008925 119 LKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNT----LARAYAQYGETYRAEQMLF 194 (548)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~ 194 (548)
.-.|.+.++.. |++...+---...|-+.|+...|..-|.++.....+.|..-... .+..+...++-+.|.+.++
T Consensus 227 ~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 227 RYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66666665542 34444444445555666666666666666655532222222222 2333444455555555555
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH--cCC
Q 008925 195 EMQNN-QVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEE--FGV 271 (548)
Q Consensus 195 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~ 271 (548)
..... +-..+...++.++..+.+...++.|.............+|..-|-+-=. ++ . -..-+.. .+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~-----~~-~----~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER-----RR-E----EPNALCEVGKEL 374 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh-----cc-c----cccccccCCCCC
Confidence 54431 1222344455555666666666666555555544333333322211000 00 0 0000000 012
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHH
Q 008925 272 KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIE--PDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFT 349 (548)
Q Consensus 272 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 349 (548)
.++... ..+.-++.+....+....+.......++. .+...|.-+..+|...|.+.+|+.+|..+......-+...|-
T Consensus 375 s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 375 SYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred Cccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 222222 12333455666666666666666666533 345678889999999999999999999998865445677899
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHH
Q 008925 350 TVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME--------EKGVRPKKSTIQLV 421 (548)
Q Consensus 350 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~l 421 (548)
.++.+|...|.+++|++.|++++... |.+...-..|...+.+.|+.++|.+.++.+. ..+..|+..+....
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 99999999999999999999999875 5666777888889999999999999998864 22344666677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 008925 422 ADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~ 442 (548)
.+.+...|+.++=+.....+.
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 888899999888666555554
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.2e-13 Score=119.98 Aligned_cols=305 Identities=18% Similarity=0.239 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChHHH-HHHHHHHHhcC------------
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACS--ESGNVDEA-MKIFQKMKDSG------------ 94 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A-~~~~~~~~~~~------------ 94 (548)
.+=+.|+.. ..+|....+.-+|+.|...|++.+...-..|+..-+ ...++.-| .+.|-.|...|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 445666654 457888889999999998888877766665554322 22222211 11222222221
Q ss_pred -------CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 008925 95 -------CKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQ 167 (548)
Q Consensus 95 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 167 (548)
.+.+..++..+|.++++.-..+.|.+++++..... .+.+..+||.++.+-.-. ...+++.+|....+.
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 12344555566666666555666666665554332 344555555555543222 124555555555556
Q ss_pred CCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhC----C---
Q 008925 168 PDAVTYNTLARAYAQYGETYR----AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMED-AMRFLYRMKEL----E--- 235 (548)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~----~--- 235 (548)
||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..++..+++.++..+ |..++.++... .
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 666666666666666665543 33444555555666666666666655555555433 33333333221 1
Q ss_pred -CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 008925 236 -VHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFG----VKPD---VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIE 307 (548)
Q Consensus 236 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (548)
.+.+..-|...+..|....+.+-|.++...+.... +.|+ ..-|..+..+.+.....+.-...|+.|+-.-+-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 11223344444555555555555555544433221 1111 122333444445555555555555555544444
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 008925 308 PDIHVFSILAKGYVRAGEPQKAESILTSMRKYG 340 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (548)
|+..+...++++....+.++-.-+++..+...|
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 555555555555555555555555555554443
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8.7e-14 Score=124.77 Aligned_cols=368 Identities=11% Similarity=0.018 Sum_probs=264.1
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH--
Q 008925 95 CKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVT-- 172 (548)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-- 172 (548)
...|...+-.....+.+.|....|++.|...... .|..-..|..|.... .+.+.+ ..+. .+.+.|...
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~li---t~~e~~----~~l~-~~l~~~~h~M~ 229 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELI---TDIEIL----SILV-VGLPSDMHWMK 229 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhh---chHHHH----HHHH-hcCcccchHHH
Confidence 3445555555556667788888899888887653 233334444443332 222222 2222 122322211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 008925 173 YNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEV--HPNLVVFNSLIKGF 250 (548)
Q Consensus 173 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~ 250 (548)
=-.+..++......+++.+-.+.....|++-+...-+....+.....|+++|+.+|+++.+.+. -.|..+|+.++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1234566777778888988888888888887777777777788889999999999999988641 12556777766433
Q ss_pred HcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 008925 251 LDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAE 330 (548)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 330 (548)
... .....+.+-...-.+--+.|...+..-|+-.++.++|..+|+++++.+ +....+|+.++.-|...++...|+
T Consensus 310 ~~~----skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 NDK----SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhh----HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHH
Confidence 221 122222222211123345677788888999999999999999999997 667789999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008925 331 SILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (548)
+.++.+.+.+ +.|-..|-.|+.+|.-.+-..-|+-+|+++.+.. |.|...|.+|+.+|.+.++.++|++.|++....|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999999864 4478899999999999999999999999999975 7789999999999999999999999999999865
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccccccccccccccccccCCCChhh
Q 008925 411 VRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAA 490 (548)
Q Consensus 411 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~ 490 (548)
..+...+..+++++-+.++.++|..++++-.+.. ..-+...+... ....-|++.+.+.++|++|.
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~-------------ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETI-------------KARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHH-------------HHHHHHHHHHHhhcchHHHH
Confidence 3466789999999999999999999999865422 11111111111 11222777788888888888
Q ss_pred hhhh
Q 008925 491 KIRS 494 (548)
Q Consensus 491 ~~~~ 494 (548)
.---
T Consensus 528 ~Ya~ 531 (559)
T KOG1155|consen 528 YYAT 531 (559)
T ss_pred HHHH
Confidence 7433
No 38
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=6e-13 Score=118.25 Aligned_cols=379 Identities=17% Similarity=0.171 Sum_probs=276.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh--ccCCh-------------------------HH
Q 008925 65 ILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYG--NVGKP-------------------------EE 117 (548)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~-------------------------~~ 117 (548)
.+=+.|+. ....|.+..+.-+|+.|.+.|++.+...-..|.+.-+ ...++ +-
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 34555554 4577899999999999999998888776555554322 21111 11
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 118 SLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQ 197 (548)
Q Consensus 118 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 197 (548)
|.-+|+. .+.+..++..++.+.|+--..+.|.+++++......+.+..+||.+|.+-.-. ...+++.+|.
T Consensus 196 AdL~~E~------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMi 265 (625)
T KOG4422|consen 196 ADLLFET------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMI 265 (625)
T ss_pred HHHHHhh------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHH
Confidence 2222222 24567899999999999999999999999998887889999999998765433 2378899999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhh-HHHHHHHHHHc---
Q 008925 198 NNQVRPNERTCGIIVSGYCKEGNMEDA----MRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDG-VDKALTLMEEF--- 269 (548)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~--- 269 (548)
.....||..|+|+++.+..+.|+++.| .+++.+|++.|+.|+..+|..++..+.+.++..+ +..++..+...
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 999999999999999999999988764 5678889999999999999999999998888755 33334443321
Q ss_pred -CCC----CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 008925 270 -GVK----PDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKA----GIEPDI---HVFSILAKGYVRAGEPQKAESILTSMR 337 (548)
Q Consensus 270 -~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (548)
.++ .|...|...+..|.+..+.+.|.++..-+... -++|+. .-|..+..+.+.....+.-...++.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 122 24566777888899999999999887766532 123442 235667777888888999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-Ch--H---H--------HHHHH
Q 008925 338 KYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK-QP--W---R--------AEELL 403 (548)
Q Consensus 338 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--~---~--------A~~~~ 403 (548)
-.-.-|+..+...++++....|.++-.-++|..+...|..-+......++..+++.. .+ . + |..++
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 766678888888899999999999999999999998875555555555555555543 11 0 0 11111
Q ss_pred -------HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHH
Q 008925 404 -------QVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIA 456 (548)
Q Consensus 404 -------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 456 (548)
.++.+ ..-....+.+++-++.+.|..++|.+++.-........|+-+--.+
T Consensus 506 e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnA 563 (625)
T KOG4422|consen 506 EAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNA 563 (625)
T ss_pred HHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhh
Confidence 12222 2344567888888999999999999999988766666665544443
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=2.7e-14 Score=137.34 Aligned_cols=290 Identities=13% Similarity=0.032 Sum_probs=197.5
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008925 146 CSKNSIEEAWNVVYKMVASGIQPD-AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDA 224 (548)
Q Consensus 146 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 224 (548)
...|+++.|.+.+.+..+.. |+ ...+-....+....|+++.|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35677777777777766652 33 3344445566777788888888887776543322222333346667777888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HhCCChhHHHHHHHH
Q 008925 225 MRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFS-TIMDAW---SSAGLMGKCQEIFDD 300 (548)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~ 300 (548)
...++.+.+.. |.++.++..+...+...|+++++.+.+..+.+.++. +...+. .-..++ ...+..+.+.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888877764 556667777778888888888888888887776543 222221 111111 222222333334444
Q ss_pred HHHcC---CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhccCChHHHHHHHHHHHHc
Q 008925 301 MVKAG---IEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVM---FTTVISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 301 ~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
+.+.. .+.++..+..++..+...|+.++|.+++++..+.. ||... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44432 12478888899999999999999999999998853 44432 122222234457888999999998876
Q ss_pred CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 375 GINPNL--KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 375 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
. |.|+ ....++++.|.+.|++++|.++|+........|+...+..++.++.+.|+.++|.+++++..
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 5555 66779999999999999999999964443357999888899999999999999999999864
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=5.4e-14 Score=134.41 Aligned_cols=285 Identities=11% Similarity=0.046 Sum_probs=182.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008925 148 KNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRF 227 (548)
Q Consensus 148 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 227 (548)
.|+++.|.+.+....+.. +-....|..........|+++.|...+.++.+....+...........+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 466666666665544431 1112222222344466666666666666665542221111111224556666777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhCCChhHHHHHHHH
Q 008925 228 LYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDV-------VTFSTIMDAWSSAGLMGKCQEIFDD 300 (548)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (548)
++++.+.. |.++.....+...|...|+++++.+++..+.+....++. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 66666654 445566666666666667777777777666665433221 1222233333334455556666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 008925 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL 380 (548)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (548)
+.+.- +.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++++..++..+.. |.|.
T Consensus 255 lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 255 QSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred CCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 54432 567778888888888899999999888888874 4554322 2333345588888888888888764 5666
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
..+..++..|.+.|++++|.+.|+.+.+. .|+...+..++.++.+.|+.++|.+++++..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77888888899999999999999888874 6888888888888899999999988888865
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=3.5e-17 Score=149.54 Aligned_cols=262 Identities=17% Similarity=0.210 Sum_probs=100.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 008925 34 TLVAALTRQKRFKSILSLISKVEKDG-MKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNV 112 (548)
Q Consensus 34 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (548)
.+...+.+.|++++|++++++..... .+.+...|..+...+...++++.|+..++++...+ +-++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45777778888888888886544332 23344555556666677888888888888887764 2245566666666 677
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008925 113 GKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASG-IQPDAVTYNTLARAYAQYGETYRAEQ 191 (548)
Q Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~ 191 (548)
+++++|.++++...+. .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|+.
T Consensus 91 ~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888887766543 3556667777777888888888888888876532 24566777778888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC
Q 008925 192 MLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV 271 (548)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 271 (548)
.+++..+..+. |......++..+...|+.+++..++....... +.|+..+..+..++...|++++|...++...+..
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 88888776443 56777778888888888888777777776643 4566677788888888888888888888877764
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 008925 272 KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVK 303 (548)
Q Consensus 272 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (548)
+.|+.....+..++...|+.++|..+.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 33777777888888888888888888776653
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=2.2e-17 Score=150.90 Aligned_cols=259 Identities=15% Similarity=0.129 Sum_probs=82.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 008925 175 TLARAYAQYGETYRAEQMLFEMQNNQ-VRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDI 253 (548)
Q Consensus 175 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (548)
.+...+...|++++|+++++...... .+.+...|..+...+...++++.|+..++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44666667777777777775443333 23344444555556666677777777777776644 2244455555555 566
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 008925 254 KDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG-IEPDIHVFSILAKGYVRAGEPQKAESI 332 (548)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (548)
+++++|.+++...-+.. +++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|++++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666665544432 344455556666666677777777766655422 234555666666666677777777777
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008925 333 LTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGV 411 (548)
Q Consensus 333 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (548)
++++++. .| |......++..+...|+.+++.++++...+.. +.|+..+..++.+|...|++++|+.+|++..+..
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 7776664 24 34556666666666677766666666666543 4455556666667777777777777777666532
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 412 RPKKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 412 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
+.|+.+...+++++...|+.++|.++.+++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 234556666667777777777777666654
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=4.2e-15 Score=139.33 Aligned_cols=287 Identities=15% Similarity=0.087 Sum_probs=230.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008925 150 SIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQV--RPNERTCGIIVSGYCKEGNMEDAMRF 227 (548)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 227 (548)
+.++|+..|.++... +.-+..+...++++|...+++++|+++|+.+.+..+ ..+...|...+..+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 567899999996554 333456777889999999999999999999987632 2256777777765422 223333
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 008925 228 L-YRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI 306 (548)
Q Consensus 228 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (548)
+ +.+.+. .+..+.+|-.+..+|.-+++++.|++.|++..+.++. ...+|+.+..-+.....+|.|...|+.++..+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 3 333333 3667899999999999999999999999999986532 67888888888888999999999999998654
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008925 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETL 386 (548)
Q Consensus 307 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 386 (548)
+.+-.+|.-|+..|.+.++++.|+-.|+++.+.+ +-+.+....++..+.+.|+.++|+++++++...+ +.|+..-..-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 3445577778899999999999999999999864 2356677788888999999999999999999876 6677766677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 387 LWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
+..+...+++++|+..++++++ +.|+.. .+..++..|.+.|+.+.|+.-|.-|.+.+|.-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 7888889999999999999998 467765 78888999999999999999999988777654
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=1.5e-13 Score=131.34 Aligned_cols=283 Identities=13% Similarity=0.086 Sum_probs=198.9
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHH
Q 008925 112 VGKPEESLKLLQLMSQDKNVKPNDRT-YNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYN--TLARAYAQYGETYR 188 (548)
Q Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~ 188 (548)
.|+++.|++.+...... .+++.. +.....+....|+++.|.+++.++.+. .|+..... .....+...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 57888888777765443 122232 333344457788888888888888765 45543322 33567778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHcCCChhhHHH
Q 008925 189 AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL-------VVFNSLIKGFLDIKDSDGVDK 261 (548)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 261 (548)
|...++.+.+..+. +......+...|.+.|++++|.+++..+.+....++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888777544 6777777888888888888888888888776533222 122233333333444555566
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 008925 262 ALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGV 341 (548)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 341 (548)
+++.+.+. .+.++.....+...+...|+.++|..++++..+. +++..... +.+....++++++++..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhC-
Confidence 66655433 2446777888888999999999999999888874 56664322 233345588899999998888763
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 342 HPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 342 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
+-|...+..++..|.+.+++++|.+.|+++.+. .|+..++..+..++.+.|+.++|.+++++...
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 234556788889999999999999999999885 68888888899999999999999999988754
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=5.5e-12 Score=113.66 Aligned_cols=444 Identities=11% Similarity=0.077 Sum_probs=326.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHh
Q 008925 32 YTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT-TSTYNTLIKGYG 110 (548)
Q Consensus 32 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 110 (548)
|-..+.--..++++..|..+|+.++... ..+...|...+.+=.++..+..|..+++++... -|. ...|--.+-.--
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHH
Confidence 3333333445778889999999998875 567888999999999999999999999999875 333 345555555555
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAE 190 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 190 (548)
..|++.-|.++|++-.. ..|+...|++.+..-.+.+.++.|..+|++.+-. .|+..+|.-..+.-.+.|....+.
T Consensus 153 ~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 67999999999999876 5899999999999999999999999999999875 699999999999999999999999
Q ss_pred HHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhhHHHHH---
Q 008925 191 QMLFEMQNNQVR--PNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPN--LVVFNSLIKGFLDIKDSDGVDKAL--- 263 (548)
Q Consensus 191 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~--- 263 (548)
.+|+...+.--. .+...+.+...--.++..++.|.-+|+-+++.- |.+ ...|......--+-|+......+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 999987764111 122334444444446778899999999888752 333 345555555445556665554443
Q ss_pred -----HHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHH-----HH---HHHcCCHhH
Q 008925 264 -----TLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIH--VFSILA-----KG---YVRAGEPQK 328 (548)
Q Consensus 264 -----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~-----~~---~~~~g~~~~ 328 (548)
+...+.+ +.|-.+|-..++.-...|+.+...++|++++..- ||-.. .|...| -+ -....+.+.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 2334433 3466778888888888999999999999999763 55321 121111 11 134678999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH----hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008925 329 AESILTSMRKYGVHPNVVMFTTVISGW----CNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQ 404 (548)
Q Consensus 329 A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (548)
+.++++..++. ++....||..+--.| .++.+...|.+++..++. .-|...+|...+..-.+.++++....+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999984 444455665544444 468899999999998875 47899999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccccccccccccccccccC
Q 008925 405 VMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEH 484 (548)
Q Consensus 405 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~ 484 (548)
+.++.+ +-+..+|...+..-...|+.+.|..+|+-+..... .+-++..++. -.+.-.+.|
T Consensus 462 kfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~---ldmpellwka----------------YIdFEi~~~ 521 (677)
T KOG1915|consen 462 KFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPA---LDMPELLWKA----------------YIDFEIEEG 521 (677)
T ss_pred HHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc---cccHHHHHHH----------------hhhhhhhcc
Confidence 999864 23455899999999999999999999998763211 0111111221 234455677
Q ss_pred CCChhhhhhhhhhccc--ccccchhhh
Q 008925 485 NGSSAAKIRSQIVLRS--DTVWTATKS 509 (548)
Q Consensus 485 ~~~~a~~~~~~~~~~~--g~~w~~~~~ 509 (548)
.++.|..++++++.+. -..|++.-.
T Consensus 522 E~ekaR~LYerlL~rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 522 EFEKARALYERLLDRTQHVKVWISFAK 548 (677)
T ss_pred hHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 7788888888888877 567887665
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=1.8e-13 Score=131.71 Aligned_cols=288 Identities=11% Similarity=0.019 Sum_probs=189.5
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPN-DRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDA--VTYNTLARAYAQYGETY 187 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 187 (548)
..|+++.|.+.+.+..+. .|+ ...+-....+....|+.+.|.+++.+..+.. |+. .........+...|+++
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 467788888777776553 333 3344455566777788888888887776652 333 23334567777788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHcCCChhhHHHHHH
Q 008925 188 RAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIK---GFLDIKDSDGVDKALT 264 (548)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~ 264 (548)
.|...++.+.+..+. +..++..+...+...|++++|.+.+..+.+.+..+.......... .....+..+.....+.
T Consensus 171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 888888887776544 566777777888888888888888888877653322211111111 1122222232333444
Q ss_pred HHHHcCC---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHhHHHHHHHHHHhC
Q 008925 265 LMEEFGV---KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVF--SILAKGYVRAGEPQKAESILTSMRKY 339 (548)
Q Consensus 265 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (548)
.+.+..+ +.++..+..+...+...|+.++|..++++..+.. +++.... ..........++.+.+.+.++...+.
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 4433322 1367778888888899999999999999988874 2222211 11112223457788888888888775
Q ss_pred CCCCC-H--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 340 GVHPN-V--VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 340 ~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
.|+ . ....+++..+.+.|++++|.+.|+++......|+...+..++..+.+.|+.++|.+++++..
T Consensus 329 --~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 --VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred --CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 343 3 45678888999999999999999954443347888888899999999999999999998864
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.3e-14 Score=136.03 Aligned_cols=289 Identities=15% Similarity=0.100 Sum_probs=218.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHhccCChHHHHHH
Q 008925 44 RFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGC--KPTTSTYNTLIKGYGNVGKPEESLKL 121 (548)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 121 (548)
+.++|+.+|+++... +.....+...+..+|...+++++|.++|+.+.+... -.+...|.+.+-.+.+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 567888888885544 344556777888899999999999999999877520 1245667766654432 223333
Q ss_pred H-HHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008925 122 L-QLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQ 200 (548)
Q Consensus 122 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 200 (548)
+ +.+... .+..+.+|.+++.+|.-+++.+.|++.|++.++.+ +....+|+.++.-+.....++.|...|+..+...
T Consensus 409 Laq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 3 222222 24567889999999999999999999999988864 3368888888888888899999999998887653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 008925 201 VRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFST 280 (548)
Q Consensus 201 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.. +-.+|.-++..|.+.++++.|.-.|+++.+.+ |.+.+....+...+-+.|+.++|+.+++++....++ |+-.--.
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 33 44556667888999999999999999998865 566777788888888899999999999998887654 5555555
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 008925 281 IMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN 344 (548)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 344 (548)
.+..+...++.++|+..++++.+.- +.+..++..++..|.+.|+.+.|+.-|.-+.+.+.++.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 6677788899999999999988773 55566888888999999999999999988887654433
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=6.7e-13 Score=113.77 Aligned_cols=290 Identities=12% Similarity=0.102 Sum_probs=171.0
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhCCCHHHH
Q 008925 77 SGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPN--DRTYNILVRAWCSKNSIEEA 154 (548)
Q Consensus 77 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a 154 (548)
..+.++|.++|-+|.+.. +.+..+.-+|...|.+.|..+.|+++...+....+..-+ ......|.+-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 456677777777776642 223445556777777777777777777777654322221 12344556667777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008925 155 WNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPN----ERTCGIIVSGYCKEGNMEDAMRFLYR 230 (548)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 230 (548)
+.+|..+.+.+ ..-......|+..|-...+|++|++.-+++.+.+..+. ...|.-+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 77777776643 23345566677777777777777777776666544322 12233344444555667777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 008925 231 MKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDI 310 (548)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 310 (548)
..+.+ +..+..--.+.......|++..|.+.++.+.+.++.--+.+...|..+|...|+.++....+..+.+.. +..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 76643 334444455566666777777777777777776544445666667777777777777777777776653 233
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---cCChHHHHHHHHHHHH
Q 008925 311 HVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN---AVKMQRAMSIYEKMCE 373 (548)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 373 (548)
..-..+........-.+.|..++.+-+.. +|+...+..++..-.. .|...+....++.|+.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333433333344455555554443332 4676666666665432 3345555555666553
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.1e-13 Score=123.19 Aligned_cols=420 Identities=10% Similarity=0.042 Sum_probs=263.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 008925 31 TYTTLVAALTRQKRFKSILSLISKVEKDGMKPD-SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT-TSTYNTLIKG 108 (548)
Q Consensus 31 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 108 (548)
.+...+.-+.+.|++++|++.|.+.+.. .|+ +..|.....+|...|+|++..+.-.+.++. .|+ +..+..-..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 3556677788889999999999998875 566 778888888889999999988888888775 343 4456666677
Q ss_pred HhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHhcCC
Q 008925 109 YGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVA-SG--IQPDAVTYNTLARAYAQYGE 185 (548)
Q Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~g~ 185 (548)
+-..|++++|+.=..-..-.+++. +..+--.+=+.+- ..|....++-.+ .+ +-|......+....+...
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~-- 264 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD-- 264 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--
Confidence 777788777764322221111111 1111000111111 112222222222 22 123332222222222110
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCC---CCCC---------HHHHHHHHHHHHc
Q 008925 186 TYRAEQMLFEMQNNQVRPNERTCGIIVSGYCK-EGNMEDAMRFLYRMKELE---VHPN---------LVVFNSLIKGFLD 252 (548)
Q Consensus 186 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~---~~~~---------~~~~~~l~~~~~~ 252 (548)
+. ..+...+...|...-..+-..+.. ...+.+|...+.+-.... ...+ ..+.......+.-
T Consensus 265 ~~------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 265 PK------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL 338 (606)
T ss_pred cc------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence 00 000000000111111111111111 113444444433322110 0111 1233333334556
Q ss_pred CCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 008925 253 IKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESI 332 (548)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (548)
.|+.-.+..-++..+.....++ ..|..+..+|....+.++....|..+.+.+ +.++.+|..-.+++.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 7888899999999998765433 347778888999999999999999999987 77888999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 008925 333 LTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVR 412 (548)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (548)
|++.++.+ +-+...|..+.-+.-+.+.+++++..|++..+. +|..+..|+.....+...+++++|.+.|+..++. .
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E 492 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--E 492 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--c
Confidence 99999864 224557777777777889999999999999886 5778899999999999999999999999999863 3
Q ss_pred CC-------HHHHH--HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhcccccccccccccccccccc
Q 008925 413 PK-------KSTIQ--LVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSE 483 (548)
Q Consensus 413 p~-------~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~ 483 (548)
|+ ...+. .++..-. .+++.+|+++++++.+.+|. ..-+|..||.+-..+
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk---------------------ce~A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK---------------------CEQAYETLAQFELQR 550 (606)
T ss_pred cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch---------------------HHHHHHHHHHHHHHH
Confidence 43 22221 2221212 28999999999998766543 344566688888888
Q ss_pred CCCChhhhhhhhh
Q 008925 484 HNGSSAAKIRSQI 496 (548)
Q Consensus 484 ~~~~~a~~~~~~~ 496 (548)
|+.++|.++.+.-
T Consensus 551 ~~i~eAielFEks 563 (606)
T KOG0547|consen 551 GKIDEAIELFEKS 563 (606)
T ss_pred hhHHHHHHHHHHH
Confidence 8888888877654
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=3.7e-12 Score=112.72 Aligned_cols=285 Identities=15% Similarity=0.112 Sum_probs=162.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008925 148 KNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRF 227 (548)
Q Consensus 148 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 227 (548)
.|++.+|++...+..+.+ +.....|..-+.+--..|+.+.+-.++.++.+....++....-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555544433 2223334444444445555555555555554443333344444444445555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhCCChhHHHHHHHH
Q 008925 228 LYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDV-------VTFSTIMDAWSSAGLMGKCQEIFDD 300 (548)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (548)
++++.+.+ +..+........+|.+.|++.....++..+.+.+.-.+. .++..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55555443 334445555555555555555555555555555433332 2455555555555555554555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 008925 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL 380 (548)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (548)
....- ..++..-..++.-+..+|+.++|.++..+..+.+..|+ -...-.+.+-++.+.-++..++..+.- +.++
T Consensus 255 ~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 54331 44556666677777777777777777777777654444 122223455666666666666666542 4455
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
..+..|+..|.+.+.+.+|..+|+...+. .|+..++..+++++.+.|+..+|.+..++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 66777777777777777777777766653 5777777777777777777777777777755
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1.7e-12 Score=111.40 Aligned_cols=288 Identities=12% Similarity=0.096 Sum_probs=171.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHH
Q 008925 148 KNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP---NERTCGIIVSGYCKEGNMEDA 224 (548)
Q Consensus 148 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A 224 (548)
+.+.++|.+.|-+|.+.. +.+..+-.+|.+.|.+.|..+.|+.+.+.+.++.--+ ...+...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 344555555555555432 2233334455555555555555555555555431110 012233445556666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCChhHHHHHHHH
Q 008925 225 MRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDV----VTFSTIMDAWSSAGLMGKCQEIFDD 300 (548)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (548)
..+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+++.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 66666666533 233455666666666667777777776666665544332 2344555555666778888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 008925 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL 380 (548)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (548)
+.+.+ +..+.+-..+++.+...|++++|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++.+.. ++.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 87765 444555666777788888888888888888776433334466777888888888888888888887753 344
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRA---IGLAREAKRVLKSAE 442 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 442 (548)
..-..+...-....-.+.|..++.+-+.. .|+...+..+++.-.. .|...+....+++|.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 44444444433344445566655555443 5777777777665543 345666666666665
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.6e-12 Score=116.86 Aligned_cols=275 Identities=9% Similarity=-0.010 Sum_probs=178.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008925 167 QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSL 246 (548)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (548)
..+......-..-+...+++.+..++.+.+.+..+ +....+..-|.++...|+..+-..+=.++.+.- |..+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 34555566666667777777777777777776533 345555555557777777766666666666643 5556777777
Q ss_pred HHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 008925 247 IKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEP 326 (548)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (548)
+--|...|+.++|.+.+.+....+.. -...|..+..++.-.|..++|...+..+.+.- +-....+.-+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 77777777777777777776665422 23456677777777777777777777666541 21222233344456667777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 327 QKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEI------GINPNLKTYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (548)
+.|.+.|.++.... +.|+...+-++...-..+.+.+|..+|+..+.. ..+--..+++.|+.+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 77777777777642 335556666666666677777777777776631 00112345677777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 401 ELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
..+++.+... +-+..++..++-++...|+++.|+..|.+++-..|.
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 7777777642 345567777777777777777777777777755543
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=7.4e-12 Score=110.87 Aligned_cols=291 Identities=14% Similarity=0.123 Sum_probs=197.7
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008925 112 VGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQ 191 (548)
Q Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 191 (548)
.|++.+|+++..+..+.. +.....|..-+.+.-..|+.+.+-+++.+..+..-.++....-+..+.....|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 477777777776654431 222344555555666677777777777777665324455556666677777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHcCCChhhHHHHHH
Q 008925 192 MLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL-------VVFNSLIKGFLDIKDSDGVDKALT 264 (548)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 264 (548)
-+.++.+.++. ++........+|.+.|++.....++..+.+.+.-.++ .+|..++.-....+..+.....|+
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 77777766554 5666777777777777777777777777776654443 356666666666666666556666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 008925 265 LMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN 344 (548)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 344 (548)
...+. .+.++..-..++.-+..+|+.++|.++..+..+.+..|. . ...-.+.+-+++..-++..++..+.. +-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 55443 344566666777778888888888888888888765554 1 11223456677777777776666542 234
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 008925 345 VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP 413 (548)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 413 (548)
+-.+.+|+..|.+.+.+.+|...|+.+++. .|+..+|..+..++.+.|++.+|.+..++....-.+|
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 467778888888888888888888887775 6788888888888888888888888888776433333
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=3.2e-11 Score=104.83 Aligned_cols=420 Identities=12% Similarity=0.064 Sum_probs=257.6
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
++...++..|+.+++.....+-.....+-..+..++...|++++|+..+..+.... .++...+..|.-++.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 45677888999998887755433333445566778889999999999999887754 56677777787777788889999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008925 84 MKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVA 163 (548)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 163 (548)
..+-.+..+ ++-.-..+...-.+.++-++-..+...+.. ....-.+|.......-.+.+|++++...+.
T Consensus 111 ~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 111 KSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888776543 333444445555566666666655555432 223344555555555567788888888776
Q ss_pred CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCH-------------------
Q 008925 164 SGIQPDAVTYNT-LARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCK--EGNM------------------- 221 (548)
Q Consensus 164 ~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~------------------- 221 (548)
.+ |+-...|. +.-+|.+..-++-+.++++--++. ++.++.+.|.......+ .|+.
T Consensus 180 dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 180 DN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred cC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 52 44444443 334566666677777776665554 22234444433322222 1221
Q ss_pred --------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 222 --------------EDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSS 287 (548)
Q Consensus 222 --------------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (548)
+.|++++-.+.+ .-+.....++--|.+.++..+|..+.+.+.- .++.-|..-.-....
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~----~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMK----HIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAA 328 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHh----hChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHH
Confidence 112222211111 1123444566677888888888877665442 123333222223333
Q ss_pred CC-------ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 008925 288 AG-------LMGKCQEIFDDMVKAGIEPD-IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAV 359 (548)
Q Consensus 288 ~~-------~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 359 (548)
.| ...-|.+.|+-.-+.+..-| ..-..++...+.-..++++.+.+++.+...-.. |...-..+..+++..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhc
Confidence 33 34455555554443333322 223445566666667899999999888875333 3333345888999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHH
Q 008925 360 KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVL 438 (548)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~ 438 (548)
++.+|.++|-++....+..+......|.++|.+.+.++-|..++-++ +-+.+.- .+..++.-|.+.|.+=-|-+.|
T Consensus 408 ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 408 NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998886655544444556778999999999887765443 2122222 4556678899999999999999
Q ss_pred HHHHhcc--CCCCC
Q 008925 439 KSAEEDR--QSMPN 450 (548)
Q Consensus 439 ~~~~~~~--~~~~~ 450 (548)
......+ |..|.
T Consensus 485 d~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 485 DELEILDPTPENWE 498 (557)
T ss_pred hHHHccCCCccccC
Confidence 8887444 45553
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.61 E-value=2.3e-10 Score=109.68 Aligned_cols=388 Identities=14% Similarity=0.118 Sum_probs=271.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHH
Q 008925 59 GMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTY 138 (548)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 138 (548)
.+..|...|..|.-++...|+++.+.+.|++....- -.....|..+...|...|.-..|+.+++.......-++++..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 355678899999999999999999999999987542 3356788999999999999999999998776543224444555
Q ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCC
Q 008925 139 NILVRAWCS-KNSIEEAWNVVYKMVAS--GI--QPDAVTYNTLARAYAQYG-----------ETYRAEQMLFEMQNNQVR 202 (548)
Q Consensus 139 ~~l~~~~~~-~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~ 202 (548)
....+.|.+ .+..++++++-.+++.. +. ......|..++-+|...- ...++++.+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444444443 46788888887777662 11 223455555555554321 234677788888776554
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHc-CCC---------
Q 008925 203 PNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEF-GVK--------- 272 (548)
Q Consensus 203 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~--------- 272 (548)
|+.+...+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+..... +..
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 445555555667788999999999999999866788899999999999999999999998865543 210
Q ss_pred ---------CCHHHHHHHHHHHHh-----------------------CCChhHHHHHHHHHH--------HcCC------
Q 008925 273 ---------PDVVTFSTIMDAWSS-----------------------AGLMGKCQEIFDDMV--------KAGI------ 306 (548)
Q Consensus 273 ---------~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~--------~~~~------ 306 (548)
....|...++..+.. .++..++......+. ..+.
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 001122222222220 011111111111111 0010
Q ss_pred -----CCC------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 008925 307 -----EPD------IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 307 -----~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (548)
.|+ ...|......+.+.+..++|...+.++.+.. +-....|...+..+...|...+|.+.|..++..+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 011 1234455567778888888888888877652 3345577777788888999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCc
Q 008925 376 INPNLKTYETLLWGYGEAKQPWRAEE--LLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNK 451 (548)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 451 (548)
|.++....+++.++.+.|+..-|.. ++..+.+.+ +.+...|..++..+...|+.++|...|..+.+..++.|-.
T Consensus 715 -P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 715 -PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred -CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 6667889999999999999888888 999999864 3457799999999999999999999999998777766644
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=6.5e-12 Score=115.89 Aligned_cols=439 Identities=12% Similarity=0.046 Sum_probs=290.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
+..-+..+.+-+..+.++..|+-+-+++...+..|+ .---+.+++.-.|+++.|..++..-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~--d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPA--DIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChH--HHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 334455555555566667777777776665543333 3334566666666777776666554322 345666666667
Q ss_pred HHhccCChHHHHHHHHHhhhC------------CCCCCC-----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008925 108 GYGNVGKPEESLKLLQLMSQD------------KNVKPN-----------DRTYNILVRAWCSKNSIEEAWNVVYKMVAS 164 (548)
Q Consensus 108 ~~~~~g~~~~A~~~~~~~~~~------------~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 164 (548)
++.+..+++.|..++...... ....+| ...+-.-...|....+.++|...|.+.+..
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 777777777777666521100 000000 011111223444555677777777776643
Q ss_pred CCCCCHHHHHHHHHHHHh--------------------cC-CHHHHHHHHHHHHh----------------CCCCCCHHH
Q 008925 165 GIQPDAVTYNTLARAYAQ--------------------YG-ETYRAEQMLFEMQN----------------NQVRPNERT 207 (548)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~--------------------~g-~~~~a~~~~~~~~~----------------~~~~~~~~~ 207 (548)
|..++..+...-.. .+ +.+.-..+|+.... .+...+...
T Consensus 171 ----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 171 ----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred ----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 44333322211100 01 11111122221100 011223444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 208 CGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSS 287 (548)
Q Consensus 208 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (548)
......-+...+++.+..++++...+.. |+....+-.-|.++...|+..+...+-..+.+.- +..+.+|-++..-|..
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 4555666778899999999999998875 6777777777778889999888777777777764 3357889999988989
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 008925 288 AGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSI 367 (548)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 367 (548)
.|+.++|+++|.+....+ +.-...|..++..|.-.|..+.|+..+..+-+. ++-...-+.-++--|.+.++.+-|.++
T Consensus 325 i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred hcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 999999999999998765 444668999999999999999999999887764 111222334455568888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 368 YEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK--GVR---P-KKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
|.++.... |.|+..++.++......+.+.+|..+|+..+.. .+. + -..++..++.++.+.+++++|+..++++
T Consensus 403 f~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 99999875 778888999988888899999999999988721 111 1 3457899999999999999999999997
Q ss_pred HhccCCCCCcchhHHHHHHHhhccccccccccccccccccccCCCChhhhhhhhhhccc
Q 008925 442 EEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS 500 (548)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~ 500 (548)
+... |.+...|-.+|-+|.-.|+.+.|.+-..+.+...
T Consensus 482 L~l~---------------------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 482 LLLS---------------------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHcC---------------------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 6443 4456666677777888888888777776665555
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.59 E-value=2.4e-10 Score=107.44 Aligned_cols=428 Identities=12% Similarity=0.105 Sum_probs=218.5
Q ss_pred ccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 6 GKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMK 85 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 85 (548)
..+++...+.+.+.+++. .+....+....+-.+...|+.++|.+..+...+.. ..+.+.|+.+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 344555555555555553 22233344444444445555555555555554432 2244455555555555555555555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 008925 86 IFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASG 165 (548)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 165 (548)
.|..+...+ +.|...|..+.-.-++.++++-....-.+..+. .+.....|..++.++.-.|+...|..+++...+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555542 223444444444444445554444444444332 12223444455555555555555555555544432
Q ss_pred -CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008925 166 -IQPDAVTYNTLA------RAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHP 238 (548)
Q Consensus 166 -~~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 238 (548)
-.|+...+.... ......|.+++|.+.+..-... +......-..-...+.+.+++++|..++..++... |
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--P 250 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--P 250 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--c
Confidence 123333322111 1223344444444444333222 11011112223344445555555555555554432 3
Q ss_pred CHHHHHHHHHHHH-cC-C----------------------------------ChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 008925 239 NLVVFNSLIKGFL-DI-K----------------------------------DSDGVDKALTLMEEFGVKPDVVTFSTIM 282 (548)
Q Consensus 239 ~~~~~~~l~~~~~-~~-~----------------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 282 (548)
|...|...+..+. +- + -.+...+++....+.|+++ ++..+.
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~ 327 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLR 327 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhH
Confidence 3333322222111 11 1 1122233334444444332 233333
Q ss_pred HHHHhCCChhHHHHHHHHHHH----cC----------CCCCHHH--HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH
Q 008925 283 DAWSSAGLMGKCQEIFDDMVK----AG----------IEPDIHV--FSILAKGYVRAGEPQKAESILTSMRKYGVHPNVV 346 (548)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 346 (548)
..|-.-...+-..++...+.. .| -+|.... +..++..+-+.|+++.|..+++.+..+ .|+..
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTli 405 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLI 405 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHH
Confidence 333222211111111111111 10 1455443 446678889999999999999999986 46644
Q ss_pred -HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CC----HHHHH
Q 008925 347 -MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVR--PK----KSTIQ 419 (548)
Q Consensus 347 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~ 419 (548)
.|..-.+.+...|++++|...++++.+.+ .+|...-..-+.-..+.++.++|.++.....+.|.. .+ .-.|.
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf 484 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWF 484 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHH
Confidence 56677788999999999999999999876 566655445666677889999999999888766531 11 11333
Q ss_pred HH--HHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 420 LV--ADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 420 ~l--~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
.+ +.+|.++|++.+|++-+..+......
T Consensus 485 ~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~ 514 (700)
T KOG1156|consen 485 QLEDGEAYLRQNKLGLALKKFHEIEKHYKT 514 (700)
T ss_pred hHhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33 57888999999998888777655443
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.58 E-value=8.2e-11 Score=110.48 Aligned_cols=432 Identities=15% Similarity=0.118 Sum_probs=283.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 008925 31 TYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYG 110 (548)
Q Consensus 31 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (548)
.|..++.+| ..+++...+++.+.+++. .+-...+.....-.+...|+.++|........... ..+.++|..+.-.+.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 444555544 568899999999998874 45556677666677788999999999999888754 347789999999999
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAE 190 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 190 (548)
...++++|++.|+...... +.|...+.-+.-.-.+.++++.....-..+.+.. +.....|..++.++.-.|++..|.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998753 5677888888777888899998888888887763 345677888999999999999999
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHH
Q 008925 191 QMLFEMQNNQ-VRPNERTCGIIV------SGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKAL 263 (548)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 263 (548)
.++++..+.. ..|+...+.-.. ....+.|..++|.+.+..-... +......-..-...+.+.++.++|..++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 9999987765 345655554332 3456788889998887665332 2223334445667788999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHHhCCChhHHH-HHHHHHHHc----------------------------------CCC
Q 008925 264 TLMEEFGVKPDVVTFSTIMD-AWSSAGLMGKCQ-EIFDDMVKA----------------------------------GIE 307 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~~~~~~~----------------------------------~~~ 307 (548)
..++..+ ||...|...+. ++....+.-++. .+|....+. |++
T Consensus 243 ~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 243 RRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 9999864 56555544443 333222222333 444444322 211
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh--------CC----------CCCCHHHH--HHHHHHHhccCChHHHHHH
Q 008925 308 PDIHVFSILAKGYVRAGEPQKAESILTSMRK--------YG----------VHPNVVMF--TTVISGWCNAVKMQRAMSI 367 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~----------~~p~~~~~--~~l~~~~~~~g~~~~A~~~ 367 (548)
+ ++..+...|- ++.++- +++++.. .| -+|....| ..++..+-..|+++.|..+
T Consensus 321 ~---vf~dl~SLyk---~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~y 393 (700)
T KOG1156|consen 321 S---VFKDLRSLYK---DPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEY 393 (700)
T ss_pred c---hhhhhHHHHh---chhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 1 1112222111 111111 2222211 00 13444444 3456667778888888888
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 368 YEKMCEIGINPNL-KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 368 ~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
++.+++. .|+. ..|..-.+.+.+.|+.++|..++++..+.+ .||..+-..-+.-..++.+.++|.++....-..+
T Consensus 394 Id~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~- 469 (700)
T KOG1156|consen 394 IDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG- 469 (700)
T ss_pred HHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc-
Confidence 8888875 4554 445566678888888888888888887754 4565555566777778888888888877643222
Q ss_pred CCCCcchhHHHHHHHhhccccccccccccccccccccCCCChhhhhh
Q 008925 447 SMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAAKIR 493 (548)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~~~ 493 (548)
..++..+......|-. +.=|..|.++++|-.|.+-.
T Consensus 470 -------~~~~~~L~~mqcmWf~----~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 470 -------FGAVNNLAEMQCMWFQ----LEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred -------cchhhhHHHhhhHHHh----HhhhHHHHHHHHHHHHHHHH
Confidence 1333444443333221 11244566666665555533
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.53 E-value=1.7e-11 Score=109.46 Aligned_cols=198 Identities=13% Similarity=0.080 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGY 109 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (548)
..+..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 445555555666666666666666655442 3334455555555566666666666666555542 23344555555555
Q ss_pred hccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008925 110 GNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRA 189 (548)
Q Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 189 (548)
...|++++|...+++.......+.....+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 55666666666665554432112223344445555555555555555555555442 22344444555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008925 190 EQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRM 231 (548)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 231 (548)
...+++.... .+.+...+..++..+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555443 1223344444444455555555555554444
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.8e-09 Score=96.16 Aligned_cols=294 Identities=10% Similarity=0.001 Sum_probs=222.3
Q ss_pred HHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008925 145 WCSKNSIEEAWNVVYKMVAS-GIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMED 223 (548)
Q Consensus 145 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 223 (548)
.+..++...|...+-.+... -++-|......+..++...|+.++|+..|++.+..++- +........-.+.+.|+++.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhh
Confidence 33445555555554444333 24556778889999999999999999999998765322 33344444556678899998
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 008925 224 AMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVK 303 (548)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (548)
...+...+.... .-....|..-+......+++..|..+-++.++.+.. +...+..-..++...+++++|.-.|+.+..
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 888888876642 223344555555666778889999988888887533 556676677788899999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHh-ccCChHHHHHHHHHHHHcCCCCC-H
Q 008925 304 AGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVI-SGWC-NAVKMQRAMSIYEKMCEIGINPN-L 380 (548)
Q Consensus 304 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~ 380 (548)
.. |.+...|.-|+.+|...|.+.+|.-+-+...+. ++.+..+..-++ ..+. .-.--++|.+++++.+.. .|+ .
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~ 438 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYT 438 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccH
Confidence 74 567889999999999999999999888777654 334555655553 2232 223358899999999885 455 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
...+.+...|...|.++.++.++++.+. ..||......+++.+...+.+.+|...|..++..+|.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 6778888999999999999999999886 4789999999999999999999999999999987765
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=6e-12 Score=108.07 Aligned_cols=234 Identities=12% Similarity=0.086 Sum_probs=132.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 008925 209 GIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSA 288 (548)
Q Consensus 209 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 288 (548)
+.+..+|.+.|.+.+|.+.|+..+.. .|-+.||..+-+.|.+..++..|..++.+-.+. .+.++.....+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34555555566666666555555543 344455555555565555565665555555543 122333333445555556
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 008925 289 GLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIY 368 (548)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 368 (548)
++.++|.++|+...+.. +.++....++...|.-.++++.|+.++++++..|+. +...|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 66666666666666553 445555555555666666666666666666666643 5556666666666666666666666
Q ss_pred HHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 369 EKMCEIGINPNL--KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 369 ~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
++++..--.|+. ..|..|.......|++.-|.+.|+-.+..+ .-..+.+++++-+-.+.|++++|..++..+....|
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 666543322332 345566666666666666666666665432 22234666666666666666666666666665555
Q ss_pred CC
Q 008925 447 SM 448 (548)
Q Consensus 447 ~~ 448 (548)
.+
T Consensus 461 ~m 462 (478)
T KOG1129|consen 461 DM 462 (478)
T ss_pred cc
Confidence 44
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=2.2e-11 Score=108.71 Aligned_cols=199 Identities=14% Similarity=0.089 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 240 LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKG 319 (548)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (548)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3455555666666666666666666665543 2244556666667777777777777777777654 4455666777777
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 320 YVRAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWR 398 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (548)
+...|++++|...++++......+ ....+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776532112 23456667777777888888888888877754 4456677777788888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 399 AEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 399 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
|...+++..+. .+.+...+..++.++...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888887765 23345566666777777888888887777654
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=1.7e-11 Score=122.70 Aligned_cols=268 Identities=9% Similarity=-0.034 Sum_probs=189.4
Q ss_pred CCHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHh
Q 008925 27 PTLITYTTLVAALT-----RQKRFKSILSLISKVEKDGMKPDSILFNAMINACSE---------SGNVDEAMKIFQKMKD 92 (548)
Q Consensus 27 ~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~ 92 (548)
.+..+|...+++.. ..+++++|+++|++..+.. |.+...|..+..++.. .+++++|...++++.+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45555555544431 2356899999999998863 3345566666655442 3457899999999988
Q ss_pred cCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 008925 93 SGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVT 172 (548)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 172 (548)
.. +.+..++..+...+...|++++|+..|++..+.. |.+...+..+...+...|++++|+..++++++.. +.+...
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~ 408 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAA 408 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhh
Confidence 74 4467888888889999999999999999998753 4556788888999999999999999999999875 223334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 008925 173 YNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLD 252 (548)
Q Consensus 173 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (548)
+..++..+...|++++|...++++.....+.+...+..+..++...|++++|...+.++.... +.+....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 444555677789999999999998766433355667778888999999999999998876542 3344566667777777
Q ss_pred CCChhhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 008925 253 IKDSDGVDKALTLMEEFG-VKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG 305 (548)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (548)
.|+ .+...++.+.+.. ..+....+ +...+.-.|+.+.+..+ +++.+.+
T Consensus 488 ~g~--~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NSE--RALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cHH--HHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 774 7777776665531 11221222 33445566777777666 7777653
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.50 E-value=5.7e-11 Score=118.88 Aligned_cols=149 Identities=10% Similarity=-0.092 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 008925 221 MEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300 (548)
Q Consensus 221 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (548)
+++|...++++.+.+ |.+...+..+...+...|++++|...++++.+.++ .+...+..+..++...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455555555555543 33444555555555555555555555555555432 1334444455555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 301 MVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
+++.+ |.+...+..++..+...|++++|...++++.+.. +| +...+..+..++...|+.++|...++++..
T Consensus 398 Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 398 CLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 55543 2222222223333444555555555555544331 12 222344444455555555555555555443
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=4.5e-12 Score=108.86 Aligned_cols=264 Identities=10% Similarity=0.061 Sum_probs=214.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHC---C------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 144 AWCSKNSIEEAWNVVYKMVAS---G------IQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSG 214 (548)
Q Consensus 144 ~~~~~g~~~~a~~~~~~~~~~---~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (548)
.+...+|+..|........+. + ...|-..-+.+.++|.+.|.+.+|.+.++..++. .|-+.||..|...
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskv 265 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKV 265 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHH
Confidence 344566777766544443221 1 1112223367899999999999999999998876 4566788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHH
Q 008925 215 YCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKC 294 (548)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 294 (548)
|.+..++..|+.+|.+-++. .|-++....-+...+-..++.+++.++++...+.. +.++....++...|.-.++++.|
T Consensus 266 Y~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMA 343 (478)
T ss_pred HHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHH
Confidence 99999999999999998875 35566666677888888899999999999998875 44677777888888999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHH
Q 008925 295 QEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNV--VMFTTVISGWCNAVKMQRAMSIYEKMC 372 (548)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 372 (548)
+.+|+++++.| ..++..|+.+.-+|...++++-++..|++++..-..|+. ..|-.+.......|++.-|.+.|+-++
T Consensus 344 lryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 344 LRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 99999999998 578899999999999999999999999999876544553 478889988999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008925 373 EIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK 415 (548)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 415 (548)
..+ +.+...++.|...-.+.|+.++|..+++.+... .|+.
T Consensus 423 ~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~--~P~m 462 (478)
T KOG1129|consen 423 TSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV--MPDM 462 (478)
T ss_pred ccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh--Cccc
Confidence 875 567789999999999999999999999988763 4553
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.50 E-value=3.1e-09 Score=99.95 Aligned_cols=428 Identities=11% Similarity=0.155 Sum_probs=267.2
Q ss_pred cccccCChhhHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHCCCCCC--HHHHHHHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEG------HRPTLITYTTLVAALTRQKRFKS---ILSLISKVEKDGMKPD--SILFNAMI 71 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~l~ 71 (548)
.+...+++++|-+.+...+... .+.+-..|..+....++.-+.-. ...+++.+... -+| ...|.+|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 3566777788877777776531 12244566666666665543332 33344444433 234 35899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC----------------------ChHHHHHHHHHhhhCC
Q 008925 72 NACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVG----------------------KPEESLKLLQLMSQDK 129 (548)
Q Consensus 72 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~~~~~~ 129 (548)
..|.+.|.+++|..+|++..+. ..++.-|..+..+|+... +++-...-|+.+....
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999998875 234444555555554321 1222333344443321
Q ss_pred C----------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 008925 130 N----------VKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD------AVTYNTLARAYAQYGETYRAEQML 193 (548)
Q Consensus 130 ~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~ 193 (548)
. .+.++..|..-+.. ..|+..+-...|.++++. +.|. ...|..+.+.|-..|+.+.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 12223333333322 356777788888888765 2232 356888999999999999999999
Q ss_pred HHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------------CCHHHHHHHHHHHHcC
Q 008925 194 FEMQNNQVRPN---ERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVH-----------------PNLVVFNSLIKGFLDI 253 (548)
Q Consensus 194 ~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~ 253 (548)
++..+-.++.- ..+|.....+=.+..+++.|+++.+++...... .+...|...+..--..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99887654322 345555556666778899999999887653211 1334566666666677
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHH---cCCHhHH
Q 008925 254 KDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIH-VFSILAKGYVR---AGEPQKA 329 (548)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~---~g~~~~A 329 (548)
|-++....+++.+.+..+- ++.........+....-++++.++|++-+..--.|+.. .|+..+.-+.+ ...++.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8888889999999887654 44444444555667778889999998877664455543 66666555443 2368899
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH--HHHhccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHH
Q 008925 330 ESILTSMRKYGVHPNVVMFTTVI--SGWCNAVKMQRAMSIYEKMCEIGINPNL--KTYETLLWGYGEAKQPWRAEELLQV 405 (548)
Q Consensus 330 ~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (548)
..+|+++++ |++|...-+.-|+ ..=-..|-...|+++++++... +++.. ..|+..+.--...=-+.....+|++
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 999999998 5666544222222 2223568889999999998764 23332 3466555433333234456677777
Q ss_pred HHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 406 MEEKGVRPKKST---IQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 406 ~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
+++. -|+... ....++.=.+.|..+.|..++.-..
T Consensus 648 aIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 648 AIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 7764 455432 3334556677788888888876655
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.49 E-value=5.1e-09 Score=98.50 Aligned_cols=479 Identities=13% Similarity=0.089 Sum_probs=254.8
Q ss_pred ccccCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGH-RPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
+..+|+......+|+.++..-+ ......|...+......+-++.+..++++.++. . +..-...+..+.+.+++++
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~--P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--A--PEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--C--HHHHHHHHHHHHhccchHH
Confidence 3456666666666666655421 112234555555555666666666666666543 2 2234555666666666666
Q ss_pred HHHHHHHHHhc------CCCCCHHHHHHHHHHHhccCChH---HHHHHHHHhhhCCCCCCCH--HHHHHHHHHHHhCCCH
Q 008925 83 AMKIFQKMKDS------GCKPTTSTYNTLIKGYGNVGKPE---ESLKLLQLMSQDKNVKPND--RTYNILVRAWCSKNSI 151 (548)
Q Consensus 83 A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 151 (548)
|.+.+...+.. ..+.+...|.-+-...++.-+.- ....+++.+... -+|. ..|++|...|.+.|.+
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHHHHHHHHhhhh
Confidence 66666665432 01223344444444444332221 122333333322 2332 4677888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------C------CHHHHHHHHHHHHhCCC--------
Q 008925 152 EEAWNVVYKMVASGIQPDAVTYNTLARAYAQY----------------G------ETYRAEQMLFEMQNNQV-------- 201 (548)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g------~~~~a~~~~~~~~~~~~-------- 201 (548)
++|.++|++.+..- .+..-|+.+.++|+.- + +++-...-|+.+.+...
T Consensus 265 ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 265 EKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 88888888876642 2333333333333221 1 11122223333322211
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC
Q 008925 202 ---RPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPN------LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK 272 (548)
Q Consensus 202 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 272 (548)
+.+...|..-+.. ..|+..+-...+.+++.. +.|. -..|..+...|-..|+.+.|..+|++..+...+
T Consensus 343 RQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 1122233322222 245666666777766553 1221 246777788888888888888888887775433
Q ss_pred CC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-----------C------CHHHHHHHHHHHHHcCCHhHHHHH
Q 008925 273 PD---VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIE-----------P------DIHVFSILAKGYVRAGEPQKAESI 332 (548)
Q Consensus 273 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~g~~~~A~~~ 332 (548)
.- ..+|..-...-.+..+++.|+.+.+.+...--. + +...|..++...-..|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 11 234444445555677788888877776532111 1 223455555555567778888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 008925 333 LTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL-KTYETLLWGYGE---AKQPWRAEELLQVMEE 408 (548)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 408 (548)
++.+.+..+. ++....+..-.+-.+.-++++.++|++-+..-..|+. ..|+..+.-+.+ .-..+.|..+|+++++
T Consensus 500 YdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 500 YDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 8888765432 3333333344445566677788777776654334554 345555444332 2357889999999888
Q ss_pred CCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-----CC-----------Ccc-hhHHHHHHHhhcccccc
Q 008925 409 KGVRPKKS--TIQLVADSWRAIGLAREAKRVLKSAEEDRQS-----MP-----------NKK-DEIAVESIHRKQNLSAS 469 (548)
Q Consensus 409 ~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~-----------~~~-~~~~~~~l~~~~~~~~~ 469 (548)
|.+|... +|...+..=-+.|....|+.+++++-..-+. ++ |-. ....-++..+..++...
T Consensus 579 -~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~ 657 (835)
T KOG2047|consen 579 -GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKA 657 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHH
Confidence 5556544 3334444555668888888888886421110 00 110 11111222222222223
Q ss_pred ccccccccccccccCCCChhhhhhhhh
Q 008925 470 NSTFLQIPGVVSSEHNGSSAAKIRSQI 496 (548)
Q Consensus 470 ~~~~~~l~~~y~~~~~~~~a~~~~~~~ 496 (548)
-...++.+++-.+.|..|.|..|+.--
T Consensus 658 r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 658 REMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 334555677777777777777776443
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=2e-09 Score=93.95 Aligned_cols=388 Identities=9% Similarity=0.019 Sum_probs=247.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 008925 36 VAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKP 115 (548)
Q Consensus 36 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 115 (548)
+.-+....|+..|+.+++.-...+-.....+-.-+..++...|++++|+..+..+.... .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44556678999999999887654322222334445677789999999999999988754 56777788888888888999
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008925 116 EESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFE 195 (548)
Q Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 195 (548)
.+|..+-.... .++.....+.....+.++-++-..+.+.+.+ ...--.+|.......-.+.+|+++++.
T Consensus 108 ~eA~~~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99998877653 3455556667777788888877777666643 234445667777777889999999999
Q ss_pred HHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHH--------
Q 008925 196 MQNNQVRPNERTCGI-IVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLM-------- 266 (548)
Q Consensus 196 ~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------- 266 (548)
++... |+-...|. +.-+|.+..-++-+.+++.--+.. ++.++...|..+....+.-.-..|+.-.+.+
T Consensus 177 vL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 177 VLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred HHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 98753 34445554 345677787788888887776653 3445555555544433322111222211111
Q ss_pred ------HHcC------------CCC-----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008925 267 ------EEFG------------VKP-----DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRA 323 (548)
Q Consensus 267 ------~~~~------------~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (548)
.+++ +-| -+..-..++--|.+.+++.+|..+.+.+. |.++.-|..-.-.+...
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAAL 329 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHh
Confidence 1111 001 12233345556778888888888877654 33444343333333444
Q ss_pred CC-------HhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008925 324 GE-------PQKAESILTSMRKYGVHPNV-VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQ 395 (548)
Q Consensus 324 g~-------~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (548)
|+ ..-|.+.|+-.-..+..-|. .--.++...+.-..++++.+.++..+...- ..|..-...+..+++..|.
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgn 408 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGN 408 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcC
Confidence 33 34455555544333322222 223445555555567888888888887653 3444444568899999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 396 PWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 396 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
+.+|.++|-++....++.+..-...+++++.+.++.+-|..++-++..
T Consensus 409 y~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t 456 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT 456 (557)
T ss_pred hHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC
Confidence 999999998776544433333444567889999999999988877543
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=9.1e-09 Score=96.02 Aligned_cols=418 Identities=14% Similarity=0.111 Sum_probs=221.3
Q ss_pred ccccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 008925 2 NILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVD 81 (548)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 81 (548)
+.+..+|++++|......++..+ +.+..++..=+-++.+.++|++|+.+.+.-.... .-+...|. =..+..+.+..+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fE-KAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFE-KAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHH-HHHHHHHcccHH
Confidence 45667899999999999999876 3366777888888899999999997666532110 11111111 123345789999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 008925 82 EAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKM 161 (548)
Q Consensus 82 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 161 (548)
+|+..++-.. +.+..+...-...+.+.|++++|+++|+.+.+...-.-+...-..++.+-. ...+ ++.+..
T Consensus 97 ealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~-~~~q~v 167 (652)
T KOG2376|consen 97 EALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV-QLLQSV 167 (652)
T ss_pred HHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH-HHHHhc
Confidence 9999988332 124446777778888999999999999999764311111111122221110 0011 112221
Q ss_pred HHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCCH-------HHHHHHHHHHHhcCCHHHH
Q 008925 162 VASGIQPDAVTYN---TLARAYAQYGETYRAEQMLFEMQNNQ-------VRPNE-------RTCGIIVSGYCKEGNMEDA 224 (548)
Q Consensus 162 ~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~l~~~~~~~g~~~~A 224 (548)
.. .| ..+|. ...-.+...|++.+|+++++...+.+ -.-+. ..-..+...+-..|+.++|
T Consensus 168 ~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 168 PE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred cC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 11 22 22333 23345667888999988888773211 00011 1122344556678889999
Q ss_pred HHHHHHHHhCCCCCCHH----HHHHHHHHHHcCCChhh-HHHHH------------HHH---------------------
Q 008925 225 MRFLYRMKELEVHPNLV----VFNSLIKGFLDIKDSDG-VDKAL------------TLM--------------------- 266 (548)
Q Consensus 225 ~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~-a~~~~------------~~~--------------------- 266 (548)
..++...+... ++|.. .-|.++..-....-++. +...+ ..+
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99888887765 33331 22222221111111110 00000 000
Q ss_pred --------HHc-CCCCCHHHHHHHHHHHH--hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH-
Q 008925 267 --------EEF-GVKPDVVTFSTIMDAWS--SAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILT- 334 (548)
Q Consensus 267 --------~~~-~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~- 334 (548)
... +..|. ..+..++..+. +......+..++...-+........+...+++.....|+++.|++++.
T Consensus 323 ~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 000 01111 22233333222 111344555555554444211123455566667777788888877777
Q ss_pred -------HHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc--CCCCCHH----HHHHHHHHHHhcCChHHHHH
Q 008925 335 -------SMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEI--GINPNLK----TYETLLWGYGEAKQPWRAEE 401 (548)
Q Consensus 335 -------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g~~~~A~~ 401 (548)
.+.+.+..| .+...+...+.+.++.+.|..++.+++.. .-.+... ++.-++..-.+.|+-++|..
T Consensus 402 ~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 402 FLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 444433333 34444555566666666666666666541 0011112 23333333445677788888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 402 LLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
.++++.+.. ++|..++..++.+|++.. .+.|+.+-+..
T Consensus 480 ~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 480 LLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred HHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 888877643 456667777777776553 55555555443
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.45 E-value=1.1e-08 Score=99.08 Aligned_cols=93 Identities=13% Similarity=0.149 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 008925 210 IIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAG 289 (548)
Q Consensus 210 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 289 (548)
.+...|...|++++|++++++.++.. |..+..|..-...+-..|++.+|.+.++....... .|...-+-....+.+.|
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCC
Confidence 33444555555555555555555532 22234455555555555555555555555555432 24444444444445555
Q ss_pred ChhHHHHHHHHHHHc
Q 008925 290 LMGKCQEIFDDMVKA 304 (548)
Q Consensus 290 ~~~~a~~~~~~~~~~ 304 (548)
++++|..++....+.
T Consensus 277 ~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 277 RIEEAEKTASLFTRE 291 (517)
T ss_pred CHHHHHHHHHhhcCC
Confidence 555555555555443
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.45 E-value=2.2e-09 Score=103.10 Aligned_cols=129 Identities=12% Similarity=0.043 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN-VVMFTTVISGW 355 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 355 (548)
.|......+...+..++|...+.++.+.. +.....|...+..+...|.+.+|.+.|...... .|+ +.+..++..++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 34456667788888899988888887764 566778888888999999999999999999885 454 55789999999
Q ss_pred hccCChHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 356 CNAVKMQRAMS--IYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 356 ~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
...|+..-|.. ++..+++.+ +.+...|..|+..+.+.|+.++|.+.|+...+.
T Consensus 729 le~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999888888 999999988 789999999999999999999999999998763
No 72
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=9e-10 Score=93.77 Aligned_cols=322 Identities=12% Similarity=0.063 Sum_probs=217.4
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNA-MINACSESGNVD 81 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~ 81 (548)
.+++..+++.|++++..-.+..++ +......|+.+|....++..|...++++... .|...-|.. -...+.+.+.+.
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccH
Confidence 356778899999999988887544 7788899999999999999999999999875 454443332 235566889999
Q ss_pred HHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 008925 82 EAMKIFQKMKDSGCKPTT--STYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVY 159 (548)
Q Consensus 82 ~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 159 (548)
.|+.+...|... ++. .+...-.......+++..+..++++.... .+..+.+...-...+.|+++.|.+-|+
T Consensus 96 DALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 96 DALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----CccchhccchheeeccccHHHHHHHHH
Confidence 999999888652 221 22222223344678888899999888642 345566666667778999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------CH---------------HHHHHH
Q 008925 160 KMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP-------------NE---------------RTCGII 211 (548)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~~l 211 (548)
...+.+--.....|+. .-+..+.|++..|++...++.++|++. |. ..+|.-
T Consensus 169 aAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 9988754445566664 446778899999999999998876532 11 122333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 008925 212 VSGYCKEGNMEDAMRFLYRMKEL-EVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGL 290 (548)
Q Consensus 212 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 290 (548)
...+.+.|+++.|.+.+..|.-+ ....|++|...+.-.-.. +++.....-+..+.+.++ ....||..++-.||+..-
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHH
Confidence 34456788888888888877432 234577777776654433 445555555666666654 346788888889999988
Q ss_pred hhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 008925 291 MGKCQEIFDDMVKAGI-EPDIHVFSILAKGYVRAGEPQKAESILTSMR 337 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (548)
++.|-.++.+-....+ -.+...|+.|=......-.+++|++-++.+.
T Consensus 326 f~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 326 FDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8888887765332211 1233334433333334456677766665543
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.42 E-value=9.1e-11 Score=111.74 Aligned_cols=167 Identities=20% Similarity=0.253 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHc-----C-CCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhC---CCCCC-
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKA-----G-IEPDIH-VFSILAKGYVRAGEPQKAESILTSMRKY---GVHPN- 344 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~- 344 (548)
.+++.|..+|.+.|++++|..+++++.+. + ..|... .++.++..+...+++++|..+++...+. -+.++
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 34445555555555555555555544421 1 112222 3444555566666666666666554431 01112
Q ss_pred ---HHHHHHHHHHHhccCChHHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CC
Q 008925 345 ---VVMFTTVISGWCNAVKMQRAMSIYEKMCEI-----G-INP-NLKTYETLLWGYGEAKQPWRAEELLQVMEE----KG 410 (548)
Q Consensus 345 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 410 (548)
..+++.|...|...|++++|.++|++++.. + ..+ ....++.|...|.+.+.+++|.++|.+... .|
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 235667777777777777777777776642 1 111 134566677777777777777777666532 22
Q ss_pred C-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 411 V-RPKKS-TIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 411 ~-~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
. .|+.. +|.+|+.+|.+.|++++|+++.+.+.
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 23433 67777777777777777777777766
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.42 E-value=2.6e-10 Score=93.67 Aligned_cols=201 Identities=12% Similarity=0.020 Sum_probs=153.2
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 242 VFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYV 321 (548)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (548)
+...+.-.|...|+...|.+-+++.+++.+ .+..++..+...|.+.|..+.|.+.|+.+++.. +.+-.+.|..+..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 445566778888888888888888887753 256677778888888888888888888888775 566678888888888
Q ss_pred HcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 322 RAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (548)
..|++++|...|+++...-.-+ -..+|..++.+..+.|+.+.|..+|++.++.. +....+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888887642111 24578888888888888888888888888875 555677778888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 401 ELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
.+++.....+. ++.+++...+.+-.+.|+.+.|-++=.......|
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 88888776653 7788777777888888888887777666554444
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.41 E-value=5.6e-10 Score=91.77 Aligned_cols=199 Identities=13% Similarity=0.057 Sum_probs=137.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 008925 31 TYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYG 110 (548)
Q Consensus 31 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (548)
+...|+-.|.+.|++..|..-+++.++.. |.+..+|..+...|.+.|+.+.|.+.|++.++.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45566667777777777777777777753 3345577777777777777777777777777653 335566777777777
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAE 190 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 190 (548)
..|++++|...|++.........-..+|..++-+..+.|+++.|...|++.++.. +-...+...+.+.....|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 7777777777777777665555555677777777777777777777777777664 334556666777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 191 QMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKE 233 (548)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 233 (548)
.+++.....+. ++..++...|..-...|+.+.+-++=.++..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777766655 5777777777777777777776666555544
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1e-08 Score=91.49 Aligned_cols=302 Identities=10% Similarity=0.056 Sum_probs=222.2
Q ss_pred HhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008925 109 YGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYR 188 (548)
Q Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 188 (548)
.+..++...|...+-.+.....++.|......+..++...|+.++|+..|++....+ +-+........-.+...|++++
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhh
Confidence 334556666666555554444467788888999999999999999999999987653 2233334444555677888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 008925 189 AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEE 268 (548)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 268 (548)
...+...+....- .+...|..-+......+++..|+.+-++.+..+ +.+...+-.-...+...+++++|.-.|+....
T Consensus 285 ~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 8888887765421 133444444555566788999999999988764 44556666667778889999999999998887
Q ss_pred cCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHH-cCCHhHHHHHHHHHHhCCCCCC-H
Q 008925 269 FGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILA-KGYVR-AGEPQKAESILTSMRKYGVHPN-V 345 (548)
Q Consensus 269 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~-~ 345 (548)
.. +.+..+|..++.+|...|++.+|...-....+. ++.+..+.+.++ ..+.- ...-++|.++++..++. .|+ .
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~ 438 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYT 438 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccH
Confidence 64 346788999999999999999999888877765 255666766664 33332 23356899999888874 565 3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLV 421 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l 421 (548)
...+.+...+...|..++++.++++.+.. .||....+.|+..+...+.+++|++.|..++.. .|... +...+
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~~~sl~Gl 511 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CccchHHHHHH
Confidence 46677888889999999999999998874 688888999999999999999999999998874 46544 55443
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.9e-09 Score=99.49 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=85.9
Q ss_pred ccccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 008925 2 NILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPD-SILFNAMINACSESGNV 80 (548)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 80 (548)
++.+..|+++.|+.+|.+++...+. |-+.|..-..++...|++++|++=-.+..+. .|+ +..|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 4567899999999999999998655 8889999999999999999999888877775 455 56899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGY 109 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (548)
++|+..|.+-++.. +.+...++.+..++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 99999999988763 33445566666555
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.38 E-value=3.4e-09 Score=102.49 Aligned_cols=135 Identities=18% Similarity=0.144 Sum_probs=110.6
Q ss_pred CCCH--HHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 008925 237 HPNL--VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFS 314 (548)
Q Consensus 237 ~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 314 (548)
+|+. .++..+.+.|...|++++|.+.++..+++.+. .+..|..-...+-+.|++.+|...++.+...+ ..|...-+
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNs 266 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINS 266 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHH
Confidence 3444 45567788899999999999999999997533 47888899999999999999999999999887 67788888
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH--H----HH--HHHHHHHhccCChHHHHHHHHHHHH
Q 008925 315 ILAKGYVRAGEPQKAESILTSMRKYGVHPNV--V----MF--TTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 315 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~----~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
-.+..+.+.|++++|.+++....+.+..|-. . +| ...+.+|.+.|++..|++.|..+.+
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8889999999999999999999876543322 1 22 4567788999999999988887775
No 79
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=2.3e-09 Score=104.46 Aligned_cols=414 Identities=14% Similarity=0.144 Sum_probs=220.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC------------------------CCHHHHHHH
Q 008925 15 YIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMK------------------------PDSILFNAM 70 (548)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------------------~~~~~~~~l 70 (548)
.++-.+...|+.|+.++|..++..|+..|+.+.|- +|.-|.-.+.+ |.+.+|..|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 45566677899999999999999999999999998 78777643333 445566666
Q ss_pred HHHHHhcCChHH---HHHHHHHHHh----cCCC-CCH-------------HHHHHHHHHHhccCChHHHHHHHHHhhhCC
Q 008925 71 INACSESGNVDE---AMKIFQKMKD----SGCK-PTT-------------STYNTLIKGYGNVGKPEESLKLLQLMSQDK 129 (548)
Q Consensus 71 ~~~~~~~g~~~~---A~~~~~~~~~----~~~~-~~~-------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 129 (548)
..+|...||... +.+.++.+.. .|+- |.. ..-...+......|.++.+++++..++...
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 666666666433 2221211111 1110 000 001122223333444555555554443322
Q ss_pred CCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008925 130 NVKPNDRTYNILVRAWCSKN-SIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTC 208 (548)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 208 (548)
...|... +++-+.... .+++-........+ .|+..+|..++.+-...|+.+.|..++.+|.+.|++.+..-|
T Consensus 170 ~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 170 WNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred ccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 1111111 122222222 22333333333322 478888888888888889999999999999988888888777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhh------------------------HHHHHH
Q 008925 209 GIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDG------------------------VDKALT 264 (548)
Q Consensus 209 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------------a~~~~~ 264 (548)
..++-+ .++...+..+++-|.+.|+.|+..|+...+..+.++|.... |.+.++
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~ 319 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLR 319 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHH
Confidence 777654 77888888888888888888888887776666555333211 111111
Q ss_pred HH------------HHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHHcCC----
Q 008925 265 LM------------EEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG--I-EPDIHVFSILAKGYVRAGE---- 325 (548)
Q Consensus 265 ~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~---- 325 (548)
.- .-.|.......|.... -....|.-+...++-..+..-. . +.++..+..++.-|.+.-+
T Consensus 320 ~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~ 398 (1088)
T KOG4318|consen 320 QNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHIC 398 (1088)
T ss_pred HHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHH
Confidence 00 0001111122222111 1223455555555554443210 0 1122333333333322111
Q ss_pred ------------------HhHHHHHHHHHHhC----------------CCC-------CCHHHHHHHHHHHhccCChHHH
Q 008925 326 ------------------PQKAESILTSMRKY----------------GVH-------PNVVMFTTVISGWCNAVKMQRA 364 (548)
Q Consensus 326 ------------------~~~A~~~~~~~~~~----------------~~~-------p~~~~~~~l~~~~~~~g~~~~A 364 (548)
..+..+.+...... ... +-...-+.++-.|+..-+..++
T Consensus 399 ~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~ 478 (1088)
T KOG4318|consen 399 SRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKI 478 (1088)
T ss_pred HHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111000 000 0011223344444444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK--GVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
+..-++....-+ ...|..|+..+.+....+.|..+.++.... .+..+..-+..+.+.+.+.+....|.++++.+.
T Consensus 479 l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~k 555 (1088)
T KOG4318|consen 479 LCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDK 555 (1088)
T ss_pred HHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhh
Confidence 443333332211 155778888888888888888888887632 223445556778888889999888888888876
Q ss_pred h
Q 008925 443 E 443 (548)
Q Consensus 443 ~ 443 (548)
+
T Consensus 556 s 556 (1088)
T KOG4318|consen 556 S 556 (1088)
T ss_pred H
Confidence 4
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=3e-10 Score=108.22 Aligned_cols=238 Identities=17% Similarity=0.193 Sum_probs=180.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-
Q 008925 169 DAVTYNTLARAYAQYGETYRAEQMLFEMQNN-----Q-VRPNER-TCGIIVSGYCKEGNMEDAMRFLYRMKEL-----E- 235 (548)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~- 235 (548)
-..+...|...|...|++++|+.+++..++. | ..|... ..+.+...|...+++.+|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3566777999999999999999999987654 2 122333 3344778899999999999999998653 1
Q ss_pred CCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHc---
Q 008925 236 VHPN-LVVFNSLIKGFLDIKDSDGVDKALTLMEEF-----GV-KPD-VVTFSTIMDAWSSAGLMGKCQEIFDDMVKA--- 304 (548)
Q Consensus 236 ~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 304 (548)
..|. ..+++.|..+|.+.|++++|...++...+. +. .|. ...++.+...+...+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1222 367888999999999999999999876543 11 122 235667778899999999999999988752
Q ss_pred CCCC-C---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 305 GIEP-D---IHVFSILAKGYVRAGEPQKAESILTSMRKY----GV--HPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 305 ~~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
-+.+ + ..+++.|...|...|++++|.+++++++.. +. .+. ...++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1122 2 357899999999999999999999998752 11 222 34678899999999999999999998764
Q ss_pred ----cCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008925 374 ----IGI-NPN-LKTYETLLWGYGEAKQPWRAEELLQVM 406 (548)
Q Consensus 374 ----~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (548)
.|. .|+ ..+|..|+.+|...|+++.|.++.+..
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 221 233 367999999999999999999877653
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=1.1e-09 Score=100.20 Aligned_cols=218 Identities=11% Similarity=-0.010 Sum_probs=108.2
Q ss_pred CChhhHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 8 GKPHEAHYIFNCLIEEGH---RPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAM 84 (548)
Q Consensus 8 g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 84 (548)
++.+.++..+.+++.... ......|..++..+...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445556666666664321 1112345556666666666666666666666553 334556666666666666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008925 85 KIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS 164 (548)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 164 (548)
..|++.++.. +-+..+|..+..++...|++++|++.|++..+. .|+..............++.++|...|.+....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 6666666542 223455566666666666666666666666553 232221112222233445566666666554432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008925 165 GIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNN---QV---RPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELE 235 (548)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 235 (548)
. +++...+ . ......|+...+ +.+..+.+. .+ +....+|..++..+.+.|++++|+..|+++.+.+
T Consensus 195 ~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 2221111 1 122223333322 222222211 00 0122345555666666666666666666665543
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.34 E-value=1.6e-09 Score=99.29 Aligned_cols=95 Identities=13% Similarity=-0.102 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 208 CGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSS 287 (548)
Q Consensus 208 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (548)
+..++..+...|++++|...|++.++.. +.+...|+.+...+...|++++|...++...+..+. +..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4444444555555555555555554433 333445555555555555555555555555544322 23444445555555
Q ss_pred CCChhHHHHHHHHHHHc
Q 008925 288 AGLMGKCQEIFDDMVKA 304 (548)
Q Consensus 288 ~~~~~~a~~~~~~~~~~ 304 (548)
.|++++|...++...+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555555544
No 83
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=1.7e-09 Score=105.35 Aligned_cols=275 Identities=16% Similarity=0.265 Sum_probs=180.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCC
Q 008925 50 SLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDK 129 (548)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 129 (548)
.++-.+...|+.|+.++|..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45566777889999999999999999999999998 9998887777778888999999888888876654
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHH
Q 008925 130 NVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQN-NQVRPNERTC 208 (548)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~ 208 (548)
.|...+|..|..+|...||+.. ++..++ -...+...+...|.-.....++..+.- .+..||...
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n- 144 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN- 144 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH-
Confidence 5788899999999999998765 222222 111233334444444444444433221 123333332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 008925 209 GIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSA 288 (548)
Q Consensus 209 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 288 (548)
.+....-.|-++.+++++..+...... .+... .+.-+.. +.....++........-.|++.+|..++.+-...
T Consensus 145 --~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 145 --AILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAA 217 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhc
Confidence 233334456666666666555322110 11111 1222222 2233344444333322247888888888888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 008925 289 GLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK 360 (548)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 360 (548)
|+.+.|..++.+|.+.|++.+..-|..|+-+ .++..-+..++..|...|+.|+..|+...+..+...|.
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888888888888888888777777655 67777888888888888888888888766666655444
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.4e-08 Score=93.82 Aligned_cols=390 Identities=13% Similarity=0.094 Sum_probs=234.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCC
Q 008925 36 VAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT-TSTYNTLIKGYGNVGK 114 (548)
Q Consensus 36 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 114 (548)
..+.+..|+++.|+.+|-+.+... +++...|..-..+|++.|++++|++--.+-++. .|+ +..|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 456678899999999999999885 568899999999999999999999887777765 454 5679999999999999
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHC---CCCCCHHHHHHHHHHHHhc-----
Q 008925 115 PEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEE---AWNVVYKMVAS---GIQPDAVTYNTLARAYAQY----- 183 (548)
Q Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~----- 183 (548)
+++|+..|.+-.... +.+...++.+..++.......+ --.++..+... .......+|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999999887752 4556667777776611100000 00011111000 0000111222222222110
Q ss_pred -----CCHHHHHHHHHHHH-----hC-------CCCC------------C----------HHHHHHHHHHHHhcCCHHHH
Q 008925 184 -----GETYRAEQMLFEMQ-----NN-------QVRP------------N----------ERTCGIIVSGYCKEGNMEDA 224 (548)
Q Consensus 184 -----g~~~~a~~~~~~~~-----~~-------~~~~------------~----------~~~~~~l~~~~~~~g~~~~A 224 (548)
.....+.-.+.... .. ...| | ..-...++++..+..++..|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 01111111111000 00 0011 0 11234466666677778888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhCCChhHHHHH
Q 008925 225 MRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFST-------IMDAWSSAGLMGKCQEI 297 (548)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~ 297 (548)
++.+....+.. .+..-++....+|...|.+...........+.|-. ....++. +..++.+.++++.++..
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 88887777754 45556666667777777777666665555554421 1222222 33355556677777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 008925 298 FDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVV-MFTTVISGWCNAVKMQRAMSIYEKMCEIGI 376 (548)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 376 (548)
|.+.+.....|+. ..+....+++....+...-. .|... -...-+..+.+.|++..|++.|.++++..
T Consensus 321 ~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~- 388 (539)
T KOG0548|consen 321 YQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD- 388 (539)
T ss_pred HHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-
Confidence 7776654323222 12223334444433333322 23221 12223556667788888888888888876
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 377 NPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
|.|...|....-+|.+.|.+..|+.-.+..++. .|+.. .|..=+.++....++++|.+.|++..+.+|.
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 667778888888888888888888877777764 44433 5555566777777888888888887776643
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=6.8e-07 Score=83.88 Aligned_cols=395 Identities=13% Similarity=0.081 Sum_probs=232.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 008925 32 YTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGN 111 (548)
Q Consensus 32 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (548)
+.+=+..+...|++++|.+...+++..+ +.+...+..=+.++++.+++++|+.+.+.-... ..+...+.--+-+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence 3334556678899999999999999875 666778888888999999999999776654321 1111111122334457
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHH
Q 008925 112 VGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAV--TYNTLARAYAQYGETYRA 189 (548)
Q Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a 189 (548)
.+..++|+..++-.. +.+..+...-...+.+.|++++|+++|+.+.+.+. ++.. .-..++..-. -..+
T Consensus 92 lnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a----~l~~ 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAA----ALQV 161 (652)
T ss_pred cccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH----hhhH
Confidence 899999999998432 23445777778889999999999999999988753 2322 1122221111 1111
Q ss_pred HHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhCC-------CCCC------H-HHHHHHHHHHHc
Q 008925 190 EQMLFEMQNNQVRPNERTCGI---IVSGYCKEGNMEDAMRFLYRMKELE-------VHPN------L-VVFNSLIKGFLD 252 (548)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~------~-~~~~~l~~~~~~ 252 (548)
. + +......| ..+|.. ....+...|++.+|+++++.....+ -..+ . ....-+.-.+..
T Consensus 162 ~-~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 Q-L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred H-H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1 1 11212222 233433 4455678999999999999883221 0111 1 122334455677
Q ss_pred CCChhhHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhCCChh-------------HHHHHHHHHH-------------
Q 008925 253 IKDSDGVDKALTLMEEFGVKPDVVT----FSTIMDAWSSAGLMG-------------KCQEIFDDMV------------- 302 (548)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~-------------~a~~~~~~~~------------- 302 (548)
.|+..+|.+++..+++..+ +|... -|.++.+-....-++ .+......+.
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888753 33211 122221110000000 0000000000
Q ss_pred ------------H--cCCCCC--HHHHHHHHHHHHH--cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 008925 303 ------------K--AGIEPD--IHVFSILAKGYVR--AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRA 364 (548)
Q Consensus 303 ------------~--~~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 364 (548)
+ ...++. ...+..++..+.+ ...+.+|..++...-+....-...+...++......|+++.|
T Consensus 316 L~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 316 LALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 0 011222 1233334333222 224667777777776653222234556677778889999999
Q ss_pred HHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CC--CCC-HHHHHHHHHHHHHcCC
Q 008925 365 MSIYE--------KMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK---GV--RPK-KSTIQLVADSWRAIGL 430 (548)
Q Consensus 365 ~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~p~-~~~~~~l~~~~~~~g~ 430 (548)
++++. .+.+.+..| .+...+...+.+.++.+-|..++.+.+.. .. .+. ..++...+..-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99999 555554334 45556667777877777777777776531 11 111 2244555566678899
Q ss_pred HHHHHHHHHHHHhccCC
Q 008925 431 AREAKRVLKSAEEDRQS 447 (548)
Q Consensus 431 ~~~A~~~~~~~~~~~~~ 447 (548)
-++|..+++++.+-.+.
T Consensus 474 ~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNPN 490 (652)
T ss_pred hHHHHHHHHHHHHhCCc
Confidence 99999999999865443
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.24 E-value=2.4e-07 Score=88.37 Aligned_cols=201 Identities=8% Similarity=-0.003 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH--
Q 008925 29 LITYTTLVAALTRQKRFKSILSLISKVEKDGM-KPDSI-LFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNT-- 104 (548)
Q Consensus 29 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-- 104 (548)
...|..+...+...|+.+.+...+....+... .++.. ........+...|++++|.+.+++..+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 35666677777777778877766666554321 12221 22223345567888999999888887752 334434432
Q ss_pred -HHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008925 105 -LIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQY 183 (548)
Q Consensus 105 -l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (548)
........+..+.+.+.+..... ..+........+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAP--ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCc--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 11112224455555555544211 122333455566677888888888888888888875 44566777788888888
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 184 GETYRAEQMLFEMQNNQVR-PNE--RTCGIIVSGYCKEGNMEDAMRFLYRMKE 233 (548)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 233 (548)
|++++|...+++....... ++. ..+..+...+...|++++|..++++...
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8888888888887765322 222 2344677778888888888888888754
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.23 E-value=1.7e-07 Score=89.41 Aligned_cols=89 Identities=10% Similarity=-0.022 Sum_probs=36.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC-CCH--HHHHHHHHHHHhC
Q 008925 212 VSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK-PDV--VTFSTIMDAWSSA 288 (548)
Q Consensus 212 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~ 288 (548)
...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++........ ++. ..+..+...+...
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 334444444444444444444432 223333444444444444444444444443332111 111 1222334444444
Q ss_pred CChhHHHHHHHHH
Q 008925 289 GLMGKCQEIFDDM 301 (548)
Q Consensus 289 ~~~~~a~~~~~~~ 301 (548)
|++++|..+++++
T Consensus 200 G~~~~A~~~~~~~ 212 (355)
T cd05804 200 GDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444444
No 88
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.22 E-value=4.2e-08 Score=93.90 Aligned_cols=297 Identities=12% Similarity=0.101 Sum_probs=155.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhh
Q 008925 179 AYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDG 258 (548)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 258 (548)
+......|.+|+.+++.+++... -..-|..+...|...|+++.|.++|.+.- .++-.+..|.+.|+|..
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 33445556666666666555422 22334455566666666666666664431 23344556666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 259 VDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
|.++-.+.. ++......|..-..-+-..|++.+|.++|-.+- .|+. .+.+|-+.|..+..+++.++-.-
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 655544332 233334445444555556666666666553322 3443 25566666666666555544321
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--
Q 008925 339 YGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-- 416 (548)
Q Consensus 339 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-- 416 (548)
. .-..+...+..-+-..|+.+.|...|-++-+ |.+-+..|..++.+++|.++-+. .|- .+..
T Consensus 879 d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---egg-~n~~k~ 942 (1636)
T KOG3616|consen 879 D---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EGG-ANAEKH 942 (1636)
T ss_pred h---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---ccc-ccHHHH
Confidence 1 1123445556666667777777766655443 33445556666666666554332 111 1111
Q ss_pred H---H------HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccccccccccccccccccCCCC
Q 008925 417 T---I------QLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGS 487 (548)
Q Consensus 417 ~---~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~ 487 (548)
. | ...+.++.+.|.+++|+...-. ...-.-+-.+.+++....-+..|++++......|+++
T Consensus 943 v~flwaksiggdaavkllnk~gll~~~id~a~d----------~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~e 1012 (1636)
T KOG3616|consen 943 VAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAAD----------NCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFE 1012 (1636)
T ss_pred HHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhc----------ccchhhHHHHHHHhhhccCccchhHHhhhhhhccchh
Confidence 0 0 0112333444444444433221 0011112223333333445667899999999999999
Q ss_pred hhhhhhhhhhccc--ccccchhhhhHHh----hccCCCCCch
Q 008925 488 SAAKIRSQIVLRS--DTVWTATKSLFVN----TYGSGVQPMV 523 (548)
Q Consensus 488 ~a~~~~~~~~~~~--g~~w~~~~~~~~~----~~~~~~~~~~ 523 (548)
+|.+-+-..+..+ ..+|...-..... +.|..|.-++
T Consensus 1013 daskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av 1054 (1636)
T KOG3616|consen 1013 DASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAV 1054 (1636)
T ss_pred hhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHH
Confidence 9999888777777 6777655433222 6666665543
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.20 E-value=2e-07 Score=81.44 Aligned_cols=316 Identities=12% Similarity=0.066 Sum_probs=156.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 008925 100 STYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTY-NTLAR 178 (548)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 178 (548)
.-..-+...+...|++..|+.-|...... -+.+-.++.--...|...|+..-|+.-+.+.++. +||-..- ..-..
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 33444555555566666666666555432 1112223333334555556655565555555554 3442221 12223
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhh
Q 008925 179 AYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDG 258 (548)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 258 (548)
.+.+.|.+++|..-|+.+++........ ..++.+.-..++ .......+..+...|+...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~-----~eaqskl~~~~e----------------~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLV-----LEAQSKLALIQE----------------HWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchh-----HHHHHHHHhHHH----------------HHHHHHHHHHHhcCCchhh
Confidence 4455566666666666555543211000 000000000000 0111223334445566666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 259 VDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
++.....+++.. +.|...+..-..+|...|.+..|+.=++.+.+.. ..+...+.-+-..+...|+.+.++...++.++
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 666666666543 2355555555566666666666666555555543 33444555555555666666666666666655
Q ss_pred CCCCCCHHH----HHHH---------HHHHhccCChHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHhcCChHHHH
Q 008925 339 YGVHPNVVM----FTTV---------ISGWCNAVKMQRAMSIYEKMCEIGINPN--LK---TYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 339 ~~~~p~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~---~~~~l~~~~~~~g~~~~A~ 400 (548)
. .||... |..+ +......+++.++++..++.++.. |. .. .+..+-.++...|++.+|+
T Consensus 252 l--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 252 L--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred c--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--CcccceeeeeeheeeecccccCCHHHHH
Confidence 3 344321 1111 111234556666666666666542 22 11 2333445555666777777
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 401 ELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 401 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
....+.++. .|+ ..++.--+.+|.-...+++|+.-++++.+.+++.
T Consensus 328 qqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 328 QQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 777766653 454 4466666666666667777777777776655543
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=3e-09 Score=99.06 Aligned_cols=97 Identities=16% Similarity=0.073 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 008925 168 PDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPN-LVVFNSL 246 (548)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l 246 (548)
+|..+...|.-.|...|++++|.+.|+.++...+. |...||.|+..++...+.++|+..|+++++. .|. +.++..|
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNl 504 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNL 504 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhh
Confidence 55566666666666666666666666666655433 5566666666666666666666666666664 333 3455566
Q ss_pred HHHHHcCCChhhHHHHHHHHH
Q 008925 247 IKGFLDIKDSDGVDKALTLME 267 (548)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~ 267 (548)
..+|...|.+++|.+.|-..+
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHH
Confidence 666666666666666655433
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=3.3e-09 Score=98.84 Aligned_cols=232 Identities=11% Similarity=0.117 Sum_probs=182.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 008925 212 VSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLM 291 (548)
Q Consensus 212 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 291 (548)
+.-+.+.|++.+|.-.|+..+..+ |-+...|..|.......++-..|+..+++..+..+. +...+..|...|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 445678999999999999998865 667899999999999999999999999999998643 678888899999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHH-------HHHHHcCCHhHHHHHH-HHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 008925 292 GKCQEIFDDMVKAGIEPDIHVFSILA-------KGYVRAGEPQKAESIL-TSMRKYGVHPNVVMFTTVISGWCNAVKMQR 363 (548)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 363 (548)
.+|+..++..+... +|-...-..-. ..+.....+....++| +.....+..+|......|+..|--.|++++
T Consensus 370 ~~Al~~L~~Wi~~~-p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 370 NQALKMLDKWIRNK-PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHhC-ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 99999999987653 22111000000 0111111122333444 334445545788888999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
|+..|+.++... |.|...|+.|+-.+....+..+|+..|+++++ +.|+.. ....|+-+|...|.++||.+.|-.++
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999875 66778899999999999999999999999998 589876 88899999999999999999999999
Q ss_pred hccCCCC
Q 008925 443 EDRQSMP 449 (548)
Q Consensus 443 ~~~~~~~ 449 (548)
.+.+...
T Consensus 526 ~mq~ks~ 532 (579)
T KOG1125|consen 526 SMQRKSR 532 (579)
T ss_pred Hhhhccc
Confidence 7766543
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.18 E-value=9e-08 Score=94.81 Aligned_cols=423 Identities=10% Similarity=-0.046 Sum_probs=255.7
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008925 9 KPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQ 88 (548)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 88 (548)
+...|+..|-+.++..+. =...|..|+..|....+...|.+.|+++-+.+ +.+..........|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 356677777777765422 23678999999988889999999999988764 4467788889999999999999998843
Q ss_pred HHHhcC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 008925 89 KMKDSG-CKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQ 167 (548)
Q Consensus 89 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 167 (548)
..-+.. ...-...|....-.|.+.++...|+.-|+...+. -|.|...|..++.+|...|++..|+++|.++....
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 332221 0001223444556677888999999999888775 36678899999999999999999999999887753
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------Hh
Q 008925 168 PDA-VTYNTLARAYAQYGETYRAEQMLFEMQNNQ------VRPNERTCGIIVSGYCKEGNMEDAMRFLYRM-------KE 233 (548)
Q Consensus 168 ~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~ 233 (548)
|+. ..--...-.-+..|.+.+|+..+..+.... ...-..++-.+...+.-.|-..+|..++++. ..
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 332 222223334567889999988888765421 1111222222222333333333344433332 22
Q ss_pred CCCCCCHHHHHHHHHHHHcCCC--hhhH----HHH-HHHHHHcCC--------------------CCCHHHHHHHHHHHH
Q 008925 234 LEVHPNLVVFNSLIKGFLDIKD--SDGV----DKA-LTLMEEFGV--------------------KPDVVTFSTIMDAWS 286 (548)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~~~--~~~a----~~~-~~~~~~~~~--------------------~~~~~~~~~l~~~~~ 286 (548)
.....+...|-.+..+|.-.-. ++.. ..+ +.++...+. ..+..+|..++..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 2212222233222222210000 0000 000 011111111 112233444443333
Q ss_pred h----C----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 008925 287 S----A----GLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA 358 (548)
Q Consensus 287 ~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 358 (548)
+ + .+...|...+...++.. ..+...|+.|.-. ...|++.-|...|-+..... +....+|..+...+...
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEec
Confidence 2 1 12335667777777653 3455566666554 55577777777776655542 33556788888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH--H--HCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008925 359 VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVM--E--EKGVRPKKSTIQLVADSWRAIGLAREA 434 (548)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~--~~~~~p~~~~~~~l~~~~~~~g~~~~A 434 (548)
.+++.|...|.+..... |.|...|..........|+.-++..+|..- . ..|-.|+..-|.+........|+.++-
T Consensus 864 ~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred ccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 99999999999888765 566777877777777788888888887762 2 233446666666666667777776665
Q ss_pred HHHHHHH
Q 008925 435 KRVLKSA 441 (548)
Q Consensus 435 ~~~~~~~ 441 (548)
+...+++
T Consensus 943 I~t~~ki 949 (1238)
T KOG1127|consen 943 INTARKI 949 (1238)
T ss_pred HHHhhhh
Confidence 5555543
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.18 E-value=5.9e-07 Score=78.55 Aligned_cols=304 Identities=12% Similarity=0.074 Sum_probs=183.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH-HHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTS-TYNTLI 106 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~ 106 (548)
++.-...++..+...|++..|+.-|....+.+ +.+-.++..-...|...|+...|+.-|.+.++. +||-. ...--.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34445556666667777777777776665532 212223333445666677777777777776664 45532 122234
Q ss_pred HHHhccCChHHHHHHHHHhhhCCCCCCC-------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008925 107 KGYGNVGKPEESLKLLQLMSQDKNVKPN-------------DRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTY 173 (548)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 173 (548)
..+.+.|.+++|..=|+.+.+....... .......+..+...|+...|+.....+++.. +-|...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 4566677777777777766654210000 0112334555666778888888888877763 4466666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHH---
Q 008925 174 NTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVF----NSL--- 246 (548)
Q Consensus 174 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l--- 246 (548)
..-..+|...|++..|+.-++...+.... +..++.-+...+...|+.+.++...++.++.+ ||-... ..+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHH
Confidence 67777788888888877777666554332 55666666777777788888887777777643 443211 111
Q ss_pred ------HHHHHcCCChhhHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008925 247 ------IKGFLDIKDSDGVDKALTLMEEFGVKPDVV---TFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILA 317 (548)
Q Consensus 247 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 317 (548)
+......++|.++.+..+...+..+..... .+..+-.++...+++.+|++...+.+... +.|..++.--.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRA 348 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHH
Confidence 112234456666666666665554332222 23334445566777888888777777664 44577777777
Q ss_pred HHHHHcCCHhHHHHHHHHHHhC
Q 008925 318 KGYVRAGEPQKAESILTSMRKY 339 (548)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~ 339 (548)
.+|.-...++.|+.-|+.+.+.
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhc
Confidence 7887777888888888877764
No 94
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=8.4e-11 Score=75.00 Aligned_cols=49 Identities=39% Similarity=0.765 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 343 PNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 343 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (548)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.1e-07 Score=81.26 Aligned_cols=327 Identities=11% Similarity=0.089 Sum_probs=216.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHh
Q 008925 32 YTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYN-TLIKGYG 110 (548)
Q Consensus 32 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 110 (548)
+...+..+.+..+++.|++++..-.++. +.+......|..+|....++..|-..++++-.. .|...-|. .-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4556666778889999999999888774 447778888899999999999999999999875 45554443 2456677
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVR--AWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYR 188 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 188 (548)
+.+.+..|+.+...|... |+...-..-+. .....+++..+..++++....| +..+.+...-...+.|+++.
T Consensus 90 ~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 889999999999888542 33322222222 3345788888888888876433 56666667667789999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------------CCH---------------
Q 008925 189 AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVH-------------PNL--------------- 240 (548)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~--------------- 240 (548)
|.+-|+...+-+--.....|+..+ +..+.|+++.|++...+++++|+. +|+
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999987754332455666544 556789999999999999887642 121
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEF-GVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKG 319 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (548)
..+|.-...+.+.++++.|.+.+..|.-. ....|++|+..+.-.- ..+++.....-+.-++..+ |-...|+..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 12233333456778888888777766422 2345677776664322 2345666666666666664 4556788888888
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHh-ccCChHHHHHHHHHHH
Q 008925 320 YVRAGEPQKAESILTSMRKYGVH-PNVVMFTTVISGWC-NAVKMQRAMSIYEKMC 372 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 372 (548)
|++..-++.|-+++.+-...... .+...|+ ++.++. ..-..++|.+-++.+.
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 99988888888877653221110 1222232 333332 2345566665555443
No 96
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=1.3e-10 Score=74.19 Aligned_cols=49 Identities=41% Similarity=0.803 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 008925 62 PDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYG 110 (548)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (548)
||..+|+.++.+|++.|++++|.++|++|.+.|++||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555556666665555555555555555555554
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.16 E-value=6.8e-07 Score=96.63 Aligned_cols=338 Identities=12% Similarity=0.025 Sum_probs=216.4
Q ss_pred HHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHH
Q 008925 107 KGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGI------QPD--AVTYNTLAR 178 (548)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~ 178 (548)
..+...|+++.+...++.+.... ...+..........+...|+++++..++......-- .+. ......+..
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 34455677777777776653210 111222233445556678999999999988754310 111 122233445
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHH
Q 008925 179 AYAQYGETYRAEQMLFEMQNNQVRPNE----RTCGIIVSGYCKEGNMEDAMRFLYRMKELEV---HP--NLVVFNSLIKG 249 (548)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~ 249 (548)
.+...|++++|...++.........+. ...+.+...+...|++++|...+++...... .+ ...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 667899999999999988764222221 2345566777889999999999988864311 11 12355666778
Q ss_pred HHcCCChhhHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCC--CHHHHHHHHH
Q 008925 250 FLDIKDSDGVDKALTLMEEF----GVK--P-DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG--IEP--DIHVFSILAK 318 (548)
Q Consensus 250 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 318 (548)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88999999999988876543 211 1 12334455666778899999999998876531 112 2334555677
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHhccCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHH
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVH-PNVVMF-----TTVISGWCNAVKMQRAMSIYEKMCEIGINPNL---KTYETLLWG 389 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~ 389 (548)
.+...|+++.|...++++...... .....+ ...+..+...|+.+.|...+............ ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 888999999999999887542100 111111 11223445688999999988776542211111 124567788
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008925 390 YGEAKQPWRAEELLQVMEEK----GVRPKK-STIQLVADSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
+...|++++|...++++... |..++. .+...++.++.+.|+.++|...++++.+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 89999999999999988642 333322 356677889999999999999999998544
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.14 E-value=6.2e-07 Score=96.93 Aligned_cols=372 Identities=11% Similarity=-0.024 Sum_probs=231.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 008925 33 TTLVAALTRQKRFKSILSLISKVEKDGMKPDSIL----FNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKG 108 (548)
Q Consensus 33 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (548)
......+...|++.+|....... ++... ...........|+++.+...++.+.......++.........
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~ 418 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAA------GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHC------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHH
Confidence 34444555566666655543332 12221 222233445678888877777765321111222233444555
Q ss_pred HhccCChHHHHHHHHHhhhCCCC-----CCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 008925 109 YGNVGKPEESLKLLQLMSQDKNV-----KPN--DRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD----AVTYNTLA 177 (548)
Q Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~-----~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~ 177 (548)
+...|++++|...+......... .+. ......+...+...|++++|...+++....-...+ ....+.+.
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 66789999999988876542110 111 12223344566789999999999999876421112 13456677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHH
Q 008925 178 RAYAQYGETYRAEQMLFEMQNNQV-----RPNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL----EVH--P-NLVVFNS 245 (548)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ 245 (548)
..+...|++++|...+.+...... .....++..+...+...|+++.|...+++.... +.. + ....+..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 778889999999999988764311 111234556677888999999999998887552 211 1 2234555
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHcC--CCC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHH--HH--HH
Q 008925 246 LIKGFLDIKDSDGVDKALTLMEEFG--VKP--DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG--IEPDIH--VF--SI 315 (548)
Q Consensus 246 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~ 315 (548)
+...+...|++++|...+....... ..+ ....+..+.......|+.+.|...+..+.... ...... .. ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 6667778899999999988765531 112 23345556667889999999999998886421 111111 10 11
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHH
Q 008925 316 LAKGYVRAGEPQKAESILTSMRKYGVHPN---VVMFTTVISGWCNAVKMQRAMSIYEKMCEI----GINPN-LKTYETLL 387 (548)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~ 387 (548)
.+..+...|+.+.|...+........... ...+..+..++...|+.++|...++++... |..++ ..+...+.
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 22445568999999999877654211111 112345677788899999999999998763 32222 24567778
Q ss_pred HHHHhcCChHHHHHHHHHHHHCC
Q 008925 388 WGYGEAKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~ 410 (548)
.++.+.|+.++|...+.++.+..
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 88999999999999999998643
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.12 E-value=5.8e-09 Score=94.00 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=68.3
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCC
Q 008925 285 WSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN----AVK 360 (548)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 360 (548)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.. ...
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 34445555555544321 234444445555555555555555555555431 12 222223333221 123
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 008925 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLA-REAKRVLK 439 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 439 (548)
+.+|.-+|+++.+. .++++.+++.++.++...|++++|.+.+++..+.+ +-++.++.+++-+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 55555555555443 24455555555555555555555555555554322 11233555555555555554 44445555
Q ss_pred HHHhccC
Q 008925 440 SAEEDRQ 446 (548)
Q Consensus 440 ~~~~~~~ 446 (548)
++....|
T Consensus 261 qL~~~~p 267 (290)
T PF04733_consen 261 QLKQSNP 267 (290)
T ss_dssp HCHHHTT
T ss_pred HHHHhCC
Confidence 5444333
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1e-06 Score=87.66 Aligned_cols=391 Identities=14% Similarity=0.165 Sum_probs=221.5
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHH---HHH------HHHH-----------CC------
Q 008925 7 KGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKR-FKSILS---LIS------KVEK-----------DG------ 59 (548)
Q Consensus 7 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~---~~~------~~~~-----------~~------ 59 (548)
.++..--...++..++.|.. +..++|.|...|..+++ ++.-++ .|+ -..+ +|
T Consensus 851 RNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~el 929 (1666)
T KOG0985|consen 851 RNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLEL 929 (1666)
T ss_pred hhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHH
Confidence 34455556667777777765 88899999998876543 332211 011 1111 11
Q ss_pred --CCCCHHHHHHHHHHHHhcCChH---HH--------HHHHHHHHhcCCC--CCHHHHHHHHHHHhccCChHHHHHHHHH
Q 008925 60 --MKPDSILFNAMINACSESGNVD---EA--------MKIFQKMKDSGCK--PTTSTYNTLIKGYGNVGKPEESLKLLQL 124 (548)
Q Consensus 60 --~~~~~~~~~~l~~~~~~~g~~~---~A--------~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 124 (548)
+......|..+.+.+.+..+.+ +. ++++++..+.+++ .|+......+.++...+-+.+-++++++
T Consensus 930 I~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEK 1009 (1666)
T KOG0985|consen 930 INVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEK 1009 (1666)
T ss_pred HHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 1112234555555555555533 22 3566777665543 3667777888999999999999999999
Q ss_pred hhhCCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 008925 125 MSQDKNVKPNDRT-YNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNN---- 199 (548)
Q Consensus 125 ~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 199 (548)
+.-++..-..... -|.|+-.. -.-+.....++.+++-.-. .|+ +...+...+-+++|..+|+...-.
T Consensus 1010 IvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~ 1081 (1666)
T KOG0985|consen 1010 IVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAI 1081 (1666)
T ss_pred HhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHH
Confidence 8754332222222 23333222 2334445555555554332 111 222333344445555555433110
Q ss_pred ------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHH
Q 008925 200 ------------------QVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDK 261 (548)
Q Consensus 200 ------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 261 (548)
.+ -.+.+|..+..+-.+.|...+|++-|-+ ..|+..|..++....+.|.+++..+
T Consensus 1082 ~VLie~i~~ldRA~efAe~~-n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1082 QVLIENIGSLDRAYEFAERC-NEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HHHHHHhhhHHHHHHHHHhh-CChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHH
Confidence 00 1345566666666666666666555433 2355566666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 008925 262 ALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGV 341 (548)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 341 (548)
.+....+..-.|... +.++-+|++.+++.+.+++.. .|+......++.-|...|.++.|.-++...
T Consensus 1155 yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----- 1220 (1666)
T KOG0985|consen 1155 YLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV----- 1220 (1666)
T ss_pred HHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----
Confidence 666555554334332 345556666666655444432 455555556666666666666665555432
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008925 342 HPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLV 421 (548)
Q Consensus 342 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 421 (548)
.-|..|...+...|++..|...-+++ .+..||..+-.+|...+.+.-| +|--.++....+-+..+
T Consensus 1221 ----SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1221 ----SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEEL 1285 (1666)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHH
Confidence 33555666666667766666544433 3556777777777776655433 23333344566778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 008925 422 ADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~ 442 (548)
+..|...|-++|-+.+++..+
T Consensus 1286 i~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHhhh
Confidence 889999999999999998865
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=2e-06 Score=83.87 Aligned_cols=384 Identities=15% Similarity=0.142 Sum_probs=219.9
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-C--------CCCCHHHHHHHHHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKD-G--------MKPDSILFNAMINA 73 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~~ 73 (548)
.|..-|+.+.|.+-.+.+. +...|..+.+.|.+..+++-|.-.+-.|... | -.|+ ..=......
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 4667788888888777653 4567899999998888877776655555321 0 0121 122223334
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 008925 74 CSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEE 153 (548)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (548)
....|-+++|+.+|.+-++ |..|=..|...|.+++|.++-+.-.+ + .=-.||......+-..++.+.
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR---i-HLr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR---I-HLRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc---e-ehhhhHHHHHHHHHhhccHHH
Confidence 4577889999999988765 34455667788999999888765322 1 122466666777777888888
Q ss_pred HHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 154 AWNVVYKM----------VASG---------IQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSG 214 (548)
Q Consensus 154 a~~~~~~~----------~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (548)
|+++|++. +... -..|...|.-.....-..|+.+.|+.+|....+ |..++..
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence 88888763 1111 011233344444444556666666666655432 3345555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC------CCCHHHHHHHHHHHH--
Q 008925 215 YCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV------KPDVVTFSTIMDAWS-- 286 (548)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~-- 286 (548)
.|-.|+.++|-++-++ .-|......+...|-..|++.+|...|.+...... ..|. -..|...+.
T Consensus 948 ~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nlal~s 1019 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLALMS 1019 (1416)
T ss_pred EeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHhhc
Confidence 5566777776665544 23556666777777777777777777765443210 0000 001111111
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH--------H--hCCCCCCHHHHHHHHHHHh
Q 008925 287 SAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSM--------R--KYGVHPNVVMFTTVISGWC 356 (548)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~--~~~~~p~~~~~~~l~~~~~ 356 (548)
...+.-.|-.+|++.- . -....+..|-+.|.+.+|+++--+- + +.+...|+...+.....++
T Consensus 1020 ~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE 1091 (1416)
T ss_pred CchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 1112223333333321 0 1122344566777777766543211 1 1223346677777888888
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCC----HHHHHHHHHHHHHcCCH
Q 008925 357 NAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME-EKGVRPK----KSTIQLVADSWRAIGLA 431 (548)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~----~~~~~~l~~~~~~~g~~ 431 (548)
...++++|..++-.+.+. ..-+..|.. .+..-..++-+.|. .++-.|+ ...+..++++|.++|.+
T Consensus 1092 ~~~qyekAV~lL~~ar~~---------~~AlqlC~~-~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Y 1161 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCLAREF---------SGALQLCKN-RNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAY 1161 (1416)
T ss_pred hHHHHHHHHHHHHHHHHH---------HHHHHHHhc-CCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccch
Confidence 888888888887776652 223333333 33343444444443 2212233 23677888999999999
Q ss_pred HHHHHHHHHH
Q 008925 432 REAKRVLKSA 441 (548)
Q Consensus 432 ~~A~~~~~~~ 441 (548)
..|.+-|.++
T Consensus 1162 h~AtKKfTQA 1171 (1416)
T KOG3617|consen 1162 HAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHhhh
Confidence 9888877764
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.10 E-value=9.3e-06 Score=75.70 Aligned_cols=421 Identities=13% Similarity=0.088 Sum_probs=254.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 008925 19 CLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT 98 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 98 (548)
+-++.++ -|+.+|+.|++-+..+ -.+++++.++++... ++..+..|..-+..-...++++...++|.+.+.. ..+
T Consensus 11 ~rie~nP-~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLn 85 (656)
T KOG1914|consen 11 ERIEENP-YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLN 85 (656)
T ss_pred HHHhcCC-ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--Hhh
Confidence 3344444 4889999999987666 999999999999876 5667789999999999999999999999998775 345
Q ss_pred HHHHHHHHHHHhc-cCCh----HHHHHHHHHhhhCCCCCCC-HHHHHHHHHH---------HHhCCCHHHHHHHHHHHHH
Q 008925 99 TSTYNTLIKGYGN-VGKP----EESLKLLQLMSQDKNVKPN-DRTYNILVRA---------WCSKNSIEEAWNVVYKMVA 163 (548)
Q Consensus 99 ~~~~~~l~~~~~~-~g~~----~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~---------~~~~g~~~~a~~~~~~~~~ 163 (548)
...|...+.--.+ .|+. +...+.|+-.....|+.+- ...|+..+.. |....+++...++|++++.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 6667666653322 2222 2233444444444443332 2334444433 2333456677788888876
Q ss_pred CCCCC------CHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHH---------------HHHHHHH
Q 008925 164 SGIQP------DAVTYNTLARAY-------AQYGETYRAEQMLFEMQN--NQVRPNER---------------TCGIIVS 213 (548)
Q Consensus 164 ~~~~~------~~~~~~~l~~~~-------~~~g~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~l~~ 213 (548)
.-+.- |-..|..=++.. -+...+..|..+++++.. .|...... .|..+|.
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 42211 111222111111 123456677777777643 12211111 1222222
Q ss_pred HHHhc------CCH--HHHHHHHHHH-HhCCCCCCHHHHH-H----HHHHHHcCCC-------hhhHHHHHHHHHHcCCC
Q 008925 214 GYCKE------GNM--EDAMRFLYRM-KELEVHPNLVVFN-S----LIKGFLDIKD-------SDGVDKALTLMEEFGVK 272 (548)
Q Consensus 214 ~~~~~------g~~--~~A~~~~~~~-~~~~~~~~~~~~~-~----l~~~~~~~~~-------~~~a~~~~~~~~~~~~~ 272 (548)
.=... |.. ....-.+++. .-.+..|+..-.. . ....+...|+ .+++.++++.....-..
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~ 325 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK 325 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 11111 111 1111122222 2222333332111 1 1112223333 34455566655543323
Q ss_pred CCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-CHHHH
Q 008925 273 PDVVTFSTIMDAWSSAG---LMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP-NVVMF 348 (548)
Q Consensus 273 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~ 348 (548)
-+..+|..+.+.-...- ..+....++.++...-...-..+|..++..-.+..-++.|..+|.++.+.+..+ ++...
T Consensus 326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa 405 (656)
T KOG1914|consen 326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVA 405 (656)
T ss_pred HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHH
Confidence 33344444333222222 255666677776654222223468888888888888999999999999877666 66778
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK--STIQLVADSWR 426 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 426 (548)
++++.-+|. ++..-|.++|+-=++. +..++......+.-+.+.++-..|..+|++.+..++.|+. .+|..+++-=.
T Consensus 406 ~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 406 AALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES 483 (656)
T ss_pred HHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH
Confidence 888888775 7889999999987764 2445555667788888999999999999999988777664 59999999999
Q ss_pred HcCCHHHHHHHHHHHHhccC
Q 008925 427 AIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~~ 446 (548)
.-|++..+.++-++.....+
T Consensus 484 ~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 484 NVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hcccHHHHHHHHHHHHHhcc
Confidence 99999999999888775444
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=1.1e-08 Score=92.10 Aligned_cols=252 Identities=13% Similarity=0.092 Sum_probs=138.8
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008925 147 SKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMR 226 (548)
Q Consensus 147 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 226 (548)
-.|++..++.-.+ .....-+.+......+.+++...|+++.++ .++.... .|.......+...+...++-+.++.
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 3455555554444 111111112233344556666666655433 2332222 4444444444444433344445544
Q ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 008925 227 FLYRMKELEVH-PNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG 305 (548)
Q Consensus 227 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (548)
-+++....... .+..........+...|++++|.+++... .+.......+.++.+.++++.|.+.++.|.+.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44444332222 12233333334455667777776665432 345666667777888888888888888877642
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHH
Q 008925 306 IEPDIHVFSILAKGYVR----AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLK 381 (548)
Q Consensus 306 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 381 (548)
.| .+...+..++.. ...+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.++++++.+.+ +.++.
T Consensus 162 --eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d 236 (290)
T PF04733_consen 162 --ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPD 236 (290)
T ss_dssp --CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHH
T ss_pred --Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHH
Confidence 33 233334443332 23578888888887654 45677778888888888888888888888877654 55667
Q ss_pred HHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHH
Q 008925 382 TYETLLWGYGEAKQP-WRAEELLQVMEEKGVRPKKS 416 (548)
Q Consensus 382 ~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~ 416 (548)
++..++.+....|+. +.+.+++.++... .|+..
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h~ 270 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNHP 270 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTSH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCCh
Confidence 777888877788877 5566777777653 45544
No 104
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.06 E-value=6.7e-07 Score=88.89 Aligned_cols=385 Identities=12% Similarity=-0.016 Sum_probs=244.5
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 008925 44 RFKSILSLISKVEKDGMKPD-SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLL 122 (548)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 122 (548)
+...|...|=+..+. .++ ...|..|...|....+...|.+.|+++.+.+ ..+...+......|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 455666666555554 333 5689999999988889999999999998764 346678889999999999999999885
Q ss_pred HHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008925 123 QLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR 202 (548)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 202 (548)
-...+......-...|....-.|.+.++...|+..|+...+.. |.|...|..++.+|...|.+..|.++|.++....+.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 4443321111112334445557788899999999999998875 567889999999999999999999999988765332
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCC-HHHHHHHHHHHHcCCChhhHHHHHHH-------HHHc
Q 008925 203 PNERTCGIIVSGYCKEGNMEDAMRFLYRMKELE-----VHPN-LVVFNSLIKGFLDIKDSDGVDKALTL-------MEEF 269 (548)
Q Consensus 203 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~ 269 (548)
+...-.-....-+..|.+.+|+..+...+... ...+ ..++..+...+...|-..++...++. ....
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 22222333445677899999998888775421 0111 12222222222222222222222222 2222
Q ss_pred CCCCCHHHHHHHHHHHH-----------------------hCCCh---h---HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 270 GVKPDVVTFSTIMDAWS-----------------------SAGLM---G---KCQEIFDDMVKAGIEPDIHVFSILAKGY 320 (548)
Q Consensus 270 ~~~~~~~~~~~l~~~~~-----------------------~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (548)
....+...|..+.++|. ..+.. + .+.+.+-..++. ..++.+|..|+..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHHH
Confidence 11112222322222221 11111 1 111111111111 22344555555554
Q ss_pred HH----cC----CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 321 VR----AG----EPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 321 ~~----~g----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
.+ .| +...|+..+.+..+.. ..+...|+.|... ...|++.-|...|-+..... +.+..+|..+...+..
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEe
Confidence 43 22 3346778888777653 2356678877766 67788988888888887764 6678889999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 393 AKQPWRAEELLQVMEEKGVRPKK-STIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
..+++.|...|...... .|+. ..|...+.+....|+.-++..+|.-
T Consensus 863 n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999988763 4543 3665555666677888888888776
No 105
>PLN02789 farnesyltranstransferase
Probab=99.04 E-value=4.7e-07 Score=82.82 Aligned_cols=204 Identities=9% Similarity=-0.055 Sum_probs=103.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh--hHH
Q 008925 218 EGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIK-DSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLM--GKC 294 (548)
Q Consensus 218 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a 294 (548)
.+..++|+.+..+++... +.+..+|+.....+...+ ++++++..++.+.+.+++ +..+|+....++.+.|+. +.+
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 344455555555555432 233344444444444444 345555555555554432 333444444444444432 445
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CC----hHHHHHH
Q 008925 295 QEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA---VK----MQRAMSI 367 (548)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~ 367 (548)
..+++.+++.+ +.+..+|+....++...|+++++++.++++++.++ -|..+|+.....+.+. |. .++++.+
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 55665666554 44555666666666666666666666666666542 2444555444444332 11 2345555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008925 368 YEKMCEIGINPNLKTYETLLWGYGEA----KQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRA 427 (548)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 427 (548)
..+++... |-|...|+.+...+... +...+|.+++.+..+.+ ..+...+..+++.++.
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 65666554 45556666666666552 23345666666655432 1233355666666654
No 106
>PLN02789 farnesyltranstransferase
Probab=98.98 E-value=1.1e-06 Score=80.37 Aligned_cols=203 Identities=9% Similarity=-0.033 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh--hhHH
Q 008925 184 GETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEG-NMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDS--DGVD 260 (548)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~ 260 (548)
+..++|+.+..++++..+. +..+|+....++...| ++++++..++++...+ +.+..+|+.....+.+.++. +++.
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 4445555555555544222 3334444444444444 4566666666665543 34444555444444444432 4455
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CC----HhHHHHHH
Q 008925 261 KALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRA---GE----PQKAESIL 333 (548)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~ 333 (548)
..++.+.+..++ +..+|+....++...|+++++++.+.++++.+ +.+..+|+....++.+. |. .++++.+.
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 566566655433 55666666666666667777777777776665 44555565555544443 22 23566666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 334 TSMRKYGVHPNVVMFTTVISGWCNA----VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 334 ~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
.+++... +-|...|+.+...+... +...+|.+.+.+....+ +.+...+..|+..|+.
T Consensus 207 ~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 6666543 23455677777666652 34456777777766654 4566677777777765
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=9.4e-07 Score=90.87 Aligned_cols=199 Identities=15% Similarity=0.198 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPD-----SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNT 104 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 104 (548)
..|-..+....+.++.+.|++++++++.. +.+. ...|.++++.-..-|.-+...++|+++.+.. ..-..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 44445555555555555555555554432 1111 1244444444444444455555555554431 11223444
Q ss_pred HHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 008925 105 LIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD---AVTYNTLARAYA 181 (548)
Q Consensus 105 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 181 (548)
|...|.+.+..++|.++++.|.+.. ......|...+..+.+.++-+.|..++.++++. -|. .......+..-.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF--~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKF--GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHh--cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 5555555555555555555554432 233444555555555555555555555554443 121 112222333334
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008925 182 QYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEV 236 (548)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 236 (548)
+.|+.+.+..+|+..+...++ ....|+..+.+-.+.|+.+.+..+|++++..++
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 445555555555544443222 334445555554555555555555555544443
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=3.4e-07 Score=88.09 Aligned_cols=215 Identities=10% Similarity=0.041 Sum_probs=153.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008925 172 TYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFL 251 (548)
Q Consensus 172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (548)
.-..+...+...|-...|..+++++ ..|..++.+|+..|+..+|..+..+-.+ .+|++..|..++....
T Consensus 400 ~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 3345667777788888888887765 3456677788888888888888877776 3677777777777766
Q ss_pred cCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 008925 252 DIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAES 331 (548)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 331 (548)
+..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|..+..+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 666666666666543322 11112222234677888888888777765 5667788888888888888888888
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 332 ILTSMRKYGVHPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 332 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
.|...... .|| ...||++-.+|.+.|+-.+|...+.++.+.+ .-+...|.+........|.+++|++.++++.+
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 88877764 454 4478888888888888888888888888776 55566676667777788888888888888764
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=1.2e-06 Score=84.41 Aligned_cols=222 Identities=15% Similarity=0.130 Sum_probs=180.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008925 132 KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGII 211 (548)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 211 (548)
+|--..-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+..++ +||+..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 4444455677888889999999999998764 4667888999999999999999888873 6788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 008925 212 VSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLM 291 (548)
Q Consensus 212 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 291 (548)
+......--+++|.+++++... .+-..+.....+.+++.++.+.++.-.+.+ +.-..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 8877777778888888876543 233333344455789999999999887765 33567888888888999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 008925 292 GKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKM 371 (548)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 371 (548)
+.|.+.|...+... |.+...||.+-.+|.+.++..+|...+.+..+.+ .-+...|.+.+....+.|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999999999874 5567799999999999999999999999999987 446678888888889999999999999999
Q ss_pred HHc
Q 008925 372 CEI 374 (548)
Q Consensus 372 ~~~ 374 (548)
.+.
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 864
No 110
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.86 E-value=9.5e-06 Score=78.32 Aligned_cols=383 Identities=15% Similarity=0.125 Sum_probs=184.2
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008925 7 KGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKI 86 (548)
Q Consensus 7 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 86 (548)
..++.+|+.+++.+..... ..--|..+...|...|+++.|.++|-+. ..++-.|..|.+.|+++.|.++
T Consensus 745 akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHH
Confidence 3344444444444433211 1122444455555555555555555432 1233445555555555555555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 008925 87 FQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGI 166 (548)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 166 (548)
-++... .......|..-..-+-+.|++.+|+++|-.+. .|+ ..+..|-+.|..+..+++..+-...
T Consensus 814 a~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h~d-- 879 (1636)
T KOG3616|consen 814 AEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD-- 879 (1636)
T ss_pred HHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhChh--
Confidence 444322 12233344444444445555555555554331 222 2344455555555555555443211
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--------------H
Q 008925 167 QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRM--------------K 232 (548)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~ 232 (548)
.-..|...+..-+-..|+...|...|-+.. -|...+++|...+-|++|-++-+.- .
T Consensus 880 -~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwak 949 (1636)
T KOG3616|consen 880 -HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAK 949 (1636)
T ss_pred -hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHH
Confidence 113455556667777788777777664432 2444556666666666665543321 1
Q ss_pred hCCCCCCHHHH------HHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 008925 233 ELEVHPNLVVF------NSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI 306 (548)
Q Consensus 233 ~~~~~~~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (548)
+.|-..-+... ..-+...+..+.++-|..+-+...+.. .|. ....+...+...|++++|-+.|-+.++.+.
T Consensus 950 siggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 950 SIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred hhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 11100000111 111222233344444444444333321 111 222344456678899999888887776531
Q ss_pred C--------CCHHHH---------HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHH
Q 008925 307 E--------PDIHVF---------SILAKGYVRAGEPQKAESILTSMRKYGVHPN--VVMFTTVISGWCNAVKMQRAMSI 367 (548)
Q Consensus 307 ~--------~~~~~~---------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 367 (548)
- |+..-. ...+.++.+..+|..|.++-+.-. |+ ...+..-.+.....|++.+|..+
T Consensus 1027 ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~-----~~~l~dv~tgqar~aiee~d~~kae~f 1101 (1636)
T KOG3616|consen 1027 YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC-----EDLLADVLTGQARGAIEEGDFLKAEGF 1101 (1636)
T ss_pred ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC-----hhhhHHHHhhhhhccccccchhhhhhh
Confidence 0 111000 011234455555555555543321 22 22344445555667777777776
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----------------HHCCCCCCHHHHHHHHHHHHHcCCH
Q 008925 368 YEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVM----------------EEKGVRPKKSTIQLVADSWRAIGLA 431 (548)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------~~~~~~p~~~~~~~l~~~~~~~g~~ 431 (548)
+-++. .|+.. ++-|...+.+..|+++.+.. .+.| .-....+..-+.-+-++|++
T Consensus 1102 llran----kp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~g-argvd~fvaqak~weq~gd~ 1171 (1636)
T KOG3616|consen 1102 LLRAN----KPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKG-ARGVDGFVAQAKEWEQAGDW 1171 (1636)
T ss_pred eeecC----CCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHhcccH
Confidence 65543 45532 33444555555555554322 1222 22334555556778888999
Q ss_pred HHHHHHHHHHH
Q 008925 432 REAKRVLKSAE 442 (548)
Q Consensus 432 ~~A~~~~~~~~ 442 (548)
.+|...+-+..
T Consensus 1172 rkav~~~lkin 1182 (1636)
T KOG3616|consen 1172 RKAVDALLKIN 1182 (1636)
T ss_pred HHHHHHHhhhc
Confidence 99988887764
No 111
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=2.4e-06 Score=83.25 Aligned_cols=336 Identities=15% Similarity=0.106 Sum_probs=177.4
Q ss_pred CHHHHHHHHH--HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCC--------C
Q 008925 63 DSILFNAMIN--ACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNV--------K 132 (548)
Q Consensus 63 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~ 132 (548)
|..+...+++ .|...|+.+.|.+-.+-++ +...|..+.+.+.+..+++-|.-.+-.|....|. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4455555553 3455666666666665554 2346666666666666666555544444321110 1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008925 133 PNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIV 212 (548)
Q Consensus 133 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 212 (548)
|+ .+-....-.....|.+++|..+|++..+ |..|=..|...|.+++|.++-+.-..... ..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 11 1111122223455667777777666543 23344456666777777666543222111 23444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----------CC---------CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCC
Q 008925 213 SGYCKEGNMEDAMRFLYRMKE----------LE---------VHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKP 273 (548)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (548)
.-+-..+|.+.|++.|++.-. .. ...|...|.-....+-..|+.+.|+.++.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 555556666666666654311 00 012334444455555566666666666655443
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC------CCCCHHH
Q 008925 274 DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYG------VHPNVVM 347 (548)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~ 347 (548)
|-.+.+..|-.|+.++|-++-++ .-|..+...|.+.|-..|++.+|...|.++.... ...| .
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd--~ 1008 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND--M 1008 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC--H
Confidence 33455556667777777766553 3466677778888888888888888887765310 0000 0
Q ss_pred HHHHHHHH--hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHHHCCC--CCCH
Q 008925 348 FTTVISGW--CNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQ--------VMEEKGV--RPKK 415 (548)
Q Consensus 348 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~--~p~~ 415 (548)
-..|...+ ....+.-.|-++|++.- . .+..-+..|-+.|.+.+|+++-= +++..++ ..|+
T Consensus 1009 ~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1009 KDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 01111111 12223334444444321 0 11223445667777777766421 1222223 3457
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 416 STIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
..++.-++.+....++++|..++-.+.
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 788888888888888888888876654
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.85 E-value=9.6e-07 Score=74.79 Aligned_cols=158 Identities=15% Similarity=0.058 Sum_probs=116.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 008925 279 STIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA 358 (548)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 358 (548)
..+-..+...|+-+....+........ +.|......++....+.|++..|...|+++.... ++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 455566667777777777766655432 5566666677788888888888888888877653 56777888888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008925 359 VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVL 438 (548)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 438 (548)
|+.++|..-|.++.+.. +.++..++.|...+.-.|+.+.|..++......+ .-+..+-.+++.+....|++++|+++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888888888764 4566777788888888888888888888777643 235567777788888888888888776
Q ss_pred HH
Q 008925 439 KS 440 (548)
Q Consensus 439 ~~ 440 (548)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 65
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=1e-06 Score=78.48 Aligned_cols=186 Identities=11% Similarity=-0.001 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH---H
Q 008925 238 PNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK-PD-VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIH---V 312 (548)
Q Consensus 238 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~ 312 (548)
.....+..++..+...|+++.|...++.+....+. |. ...+..+..++...|++++|...++.+++.. +.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 34456666666677777777777777766664321 11 1345556666677777777777777776553 21221 3
Q ss_pred HHHHHHHHHHc--------CCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHH
Q 008925 313 FSILAKGYVRA--------GEPQKAESILTSMRKYGVHPNVV-MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTY 383 (548)
Q Consensus 313 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 383 (548)
+..+..++... |++++|.+.++.+.+. .|+.. .+..+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~-------~~-------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN-------RL-------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH-------HH-------HHHH
Confidence 44445555443 5566666666666654 23322 2111111000 000 00 0011
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008925 384 ETLLWGYGEAKQPWRAEELLQVMEEKGV-RP-KKSTIQLVADSWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (548)
..+...+.+.|++++|+..+++..+... .| ....+..++.++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2466778899999999999999986421 23 2457888999999999999999998886544
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.83 E-value=1.2e-06 Score=74.74 Aligned_cols=119 Identities=11% Similarity=0.072 Sum_probs=85.9
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCC--hHHH
Q 008925 288 AGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGW-CNAVK--MQRA 364 (548)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 364 (548)
.++.+++...++..++.+ +.+...|..++..|...|++++|...|+++.+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455667777777777665 6677778888888888888888888888777754 23555666666653 55565 4788
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
.++++++++.+ +.+...+..++..+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888888765 556677777777888888888888888887764
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=4.7e-06 Score=85.95 Aligned_cols=207 Identities=13% Similarity=0.039 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCH
Q 008925 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT-----TSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPND 135 (548)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 135 (548)
|.+...|...|......++.++|++++++++.. +.+. ...|.+++..-...|.-+...++|+++.+- ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~ 1530 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAY 1530 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchH
Confidence 334556666666667777777777777766653 2111 234555555555556666666666666552 2223
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 008925 136 RTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR-PNERTCGIIVSG 214 (548)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 214 (548)
..|..|...|.+.+..++|.++++.|.+.- ......|...+..+.+..+-+.|..++.+.++.-++ .........+..
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 455666666666666666666666666542 234556666666666666666666666665554221 012223333444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCC
Q 008925 215 YCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKP 273 (548)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (548)
-.+.|+.+.+..+|+..+... |.-...|+..+..-.++|+.+.+..+|+++...++.|
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 455666666666666655432 3444556666666666666666666666665555443
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.81 E-value=2.4e-06 Score=72.43 Aligned_cols=163 Identities=10% Similarity=0.044 Sum_probs=122.6
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 239 NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAK 318 (548)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (548)
|... ..+...+...|+-+....+........ +.|.......+....+.|++..|...++++.... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3344 566667777777777777766654432 3355666667888888888888888888888776 788888888888
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWR 398 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (548)
+|.+.|+.+.|..-|.+..+.. .-+....+.+.-.+.-.|+.+.|..++......+ +-|...-..|..+....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 8888888888888888888752 2245567888888888888888888888888764 4467777788888888888888
Q ss_pred HHHHHHHH
Q 008925 399 AEELLQVM 406 (548)
Q Consensus 399 A~~~~~~~ 406 (548)
|..+...-
T Consensus 221 A~~i~~~e 228 (257)
T COG5010 221 AEDIAVQE 228 (257)
T ss_pred HHhhcccc
Confidence 88766543
No 117
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=6.5e-05 Score=75.37 Aligned_cols=358 Identities=15% Similarity=0.188 Sum_probs=194.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDG--MKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTL 105 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 105 (548)
|+......+.++...+-..+.+++++++.-.+ +..+...-+.|+-...+ -+.....+..+++.... .| .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------DI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------hH
Confidence 33444555666666666666666666664321 11122233333333333 23344455555544321 11 12
Q ss_pred HHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008925 106 IKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGE 185 (548)
Q Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 185 (548)
.......+-+++|..+|++.. .+....+.|+.- .+..+.|.++-++. ..+..|..+..+-.+.|.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCc
Confidence 333444555677777766542 244444444432 34555555544442 245678888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 008925 186 TYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTL 265 (548)
Q Consensus 186 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 265 (548)
..+|.+-|-+. .|+..|..++....+.|.+++-.+++..+.+....|.. =+.++-+|++.++..+.++.+
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh--
Confidence 88887766543 26778888888888888888888888777765544443 346777788777765544332
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh-------
Q 008925 266 MEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK------- 338 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 338 (548)
.-|+......+.+-|...+.++.|.-+|... ..|..|...+...|+++.|.+.-+++..
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~V 1255 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEV 1255 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 2356666677777777777777777666533 3355566666666666666544433321
Q ss_pred -----------------CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 339 -----------------YGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEE 401 (548)
Q Consensus 339 -----------------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (548)
.++-....-...++..|...|-+++-+.+++..+... ....-.|+.|.-.|++- ++++..+
T Consensus 1256 cfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~E 1333 (1666)
T KOG0985|consen 1256 CFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMME 1333 (1666)
T ss_pred HHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHH
Confidence 1111122334445555556666666666665554321 22233455555555443 3455555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 402 LLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
.++-...+ .+ .-.+++++-.+..|.|..=++.+
T Consensus 1334 Hl~LFwsR---vN---ipKviRA~eqahlW~ElvfLY~~ 1366 (1666)
T KOG0985|consen 1334 HLKLFWSR---VN---IPKVIRAAEQAHLWSELVFLYDK 1366 (1666)
T ss_pred HHHHHHHh---cc---hHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444321 11 11244555555555555554444
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=9.4e-07 Score=71.14 Aligned_cols=92 Identities=10% Similarity=-0.007 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008925 315 ILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK 394 (548)
Q Consensus 315 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (548)
.+...+...|++++|...|+.+.... +.+...|..++.++...|++++|+..|+++.+.. +.+...+..++.++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34444455555555555555554432 2234444555555555555555555555555443 344455555555555555
Q ss_pred ChHHHHHHHHHHHH
Q 008925 395 QPWRAEELLQVMEE 408 (548)
Q Consensus 395 ~~~~A~~~~~~~~~ 408 (548)
++++|+..|+..++
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=3.6e-06 Score=74.91 Aligned_cols=185 Identities=13% Similarity=0.016 Sum_probs=119.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH---HH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDS---ILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTT---ST 101 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~ 101 (548)
....+..++..+...|+++.|...|+++.... +.+. ..+..+..++...|++++|+..++++.+... .+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHHH
Confidence 45667777788888888888888888887653 2222 3566777788888888888888888876521 111 24
Q ss_pred HHHHHHHHhcc--------CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008925 102 YNTLIKGYGNV--------GKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTY 173 (548)
Q Consensus 102 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 173 (548)
+..+..++... |+.++|.+.|+.+.... +.+...+..+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~-------~~-------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN-------RL-------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH-------HH-------HHHH
Confidence 45555555543 66777888888776642 222222222211100 000 00 0111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 174 NTLARAYAQYGETYRAEQMLFEMQNNQVR--PNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 174 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
..+...+...|++.+|...++...+.... .....+..++.++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 24667788999999999999998876432 23567888899999999999999988887664
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.73 E-value=4e-06 Score=71.47 Aligned_cols=123 Identities=9% Similarity=0.156 Sum_probs=71.4
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCC--HhHHH
Q 008925 254 KDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGY-VRAGE--PQKAE 330 (548)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~ 330 (548)
++.+++...++...+.+ +.+...|..+...|...|+++.|...|+++.+.. +.+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34445555555555543 2355666666666666666666666666666654 44555666666543 45555 36666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 008925 331 SILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL 380 (548)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (548)
.++++..+.+ +.+...+..+...+...|++++|+..|+++++.. +|+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~ 178 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRV 178 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 6666666653 2244556666666666666666666666666654 4443
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=3.6e-05 Score=65.40 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=91.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--
Q 008925 280 TIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN-- 357 (548)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 357 (548)
.-+..|.+.+++++|++..... .+......=+..+.+..+.+-|.+.+++|.+. .+..+.+.|..+|.+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la 183 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLA 183 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHh
Confidence 3344566667777776665541 12222222234455566666777777777653 244555555555543
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-H
Q 008925 358 --AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLARE-A 434 (548)
Q Consensus 358 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A 434 (548)
.+.+.+|.-+|++|.+.- +|+..+.+..+.++...|++++|..+++.++.+. ..+++++.+++-+-...|...+ -
T Consensus 184 ~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred ccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHH
Confidence 344667777777776642 6677777777777777777777777777776543 3345566666665556665433 3
Q ss_pred HHHHHHHHhccCCCC
Q 008925 435 KRVLKSAEEDRQSMP 449 (548)
Q Consensus 435 ~~~~~~~~~~~~~~~ 449 (548)
.+.+.+.....|..+
T Consensus 262 ~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 262 ERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHhcCCcch
Confidence 445555555544444
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=1.1e-05 Score=81.77 Aligned_cols=146 Identities=7% Similarity=-0.005 Sum_probs=95.4
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 008925 237 HPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSIL 316 (548)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (548)
+.+...+..|.......|.+++|..+++...+..+. +......++..+.+.+++++|+..++++.... +.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 455666777777777777777777777777765422 34555666667777777777777777777664 4555666667
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETL 386 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 386 (548)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+++.+.. .|....|+.+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 777777777777777777777632 1235566777777777777777777777777653 3444444444
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.70 E-value=1.2e-06 Score=70.43 Aligned_cols=124 Identities=11% Similarity=-0.065 Sum_probs=94.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 008925 260 DKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKY 339 (548)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (548)
..+++...+.. |+ .+.....++...|++++|...|+.++... +.+...+..++.++...|++++|...|+.+...
T Consensus 13 ~~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34555555542 33 34456778888999999999999988876 667888889999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 340 GVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 340 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
+ +.+...+..++.++...|++++|+..|+++++.. +.+...+.....++
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQ 136 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 4 3467788888889999999999999999998864 44555554444443
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=4.4e-05 Score=64.91 Aligned_cols=239 Identities=13% Similarity=0.093 Sum_probs=119.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 008925 36 VAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKP 115 (548)
Q Consensus 36 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 115 (548)
++-+.-.|++..++..-+..... +.+...-..+.++|...|++.....-... .. .|....+..+...+..-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~eI~~---~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISEIKE---GK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccccccc---cc-CChHHHHHHHHHHhhCcchh
Confidence 45555567777766655554332 13333444455666666655433322221 11 22333333333333333333
Q ss_pred HHHH-HHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008925 116 EESL-KLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLF 194 (548)
Q Consensus 116 ~~A~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 194 (548)
++-+ ++.+.+... ....+......-+..|+..+++++|++...... +......=...+.+..+++-|.+.++
T Consensus 89 ~~~~~~l~E~~a~~-~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 89 KSILASLYELVADS-TDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred HHHHHHHHHHHHhh-ccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 223333221 122222333333445666777777776665511 22222222344555666666777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcC
Q 008925 195 EMQNNQVRPNERTCGIIVSGYCK----EGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFG 270 (548)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 270 (548)
.|.+. .+..+.+.|..+|.+ .+.+.+|.-+|+++.+. .+|++.+.+-.+.++...+++++|..+++......
T Consensus 162 ~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 76653 144555555555443 34566666666666553 35666666666666666666666666666666554
Q ss_pred CCCCHHHHHHHHHHHHhCCChh
Q 008925 271 VKPDVVTFSTIMDAWSSAGLMG 292 (548)
Q Consensus 271 ~~~~~~~~~~l~~~~~~~~~~~ 292 (548)
.+ ++.++..++.+-...|...
T Consensus 238 ~~-dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 238 AK-DPETLANLIVLALHLGKDA 258 (299)
T ss_pred CC-CHHHHHHHHHHHHHhCCCh
Confidence 22 4555555555555555443
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.68 E-value=1.6e-05 Score=80.52 Aligned_cols=132 Identities=12% Similarity=0.167 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 008925 63 DSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILV 142 (548)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 142 (548)
++..+..|.....+.|++++|..+++...+.. +-+...+..++.++.+.+++++|+..+++..... +.+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHH
Confidence 34444444455555555555555555554431 1223344444455555555555555555544431 23334444444
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 143 RAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQN 198 (548)
Q Consensus 143 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 198 (548)
.++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555554421 22344444555555555555555555554443
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.67 E-value=1.7e-05 Score=81.22 Aligned_cols=239 Identities=8% Similarity=0.084 Sum_probs=131.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008925 132 KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD-AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGI 210 (548)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 210 (548)
+.+...+..|+..+...+++++|.++.+...+. .|+ ...|..++..+.+.++..++.-+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 334566677777777777777777777766554 333 33333344445555554333322 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 008925 211 IVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGL 290 (548)
Q Consensus 211 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 290 (548)
++.......++.....+...+.+. ..+..++..++.+|-+.|+.+++..+++++.+.. +.++.+.|.+...|+.. +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 233333334443333333344432 2334466666666666777777777777666665 33566666666666666 6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 008925 291 MGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEK 370 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 370 (548)
+++|..++.+++.. +...+++..+.++|.++.... |+. ++.-..+.++
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d---------------~d~f~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDD---------------FDFFLRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--ccc---------------chHHHHHHHH
Confidence 66666666666543 445556666666666666542 221 1222222222
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008925 371 MCEI-GINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWR 426 (548)
Q Consensus 371 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (548)
+... +..--..++.-+-..|...+++++++.+++.+++.. +-+......++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 2221 222233445556667777788888888888888753 223345666666665
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.62 E-value=2.7e-05 Score=79.71 Aligned_cols=237 Identities=9% Similarity=0.055 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPD-SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLI 106 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 106 (548)
+...+..|+..+...+++++|.++.+...+. .|+ ...|..+...+.+.++.+++..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 4467788888887888888888888866664 333 33444444456666665554444 2 22
Q ss_pred HHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008925 107 KGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGET 186 (548)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 186 (548)
.......++.-...+...+.. ...+...+..++.+|-+.|+.++|..+++++++.. +-|+.+.|.++..|... +.
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 223333333223333333332 23344577778888888888888888888888876 55778888888888888 88
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 008925 187 YRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLM 266 (548)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 266 (548)
++|++++.++... +...+++..+.+++.++.... +.+... -..+.+.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~----------------f~~i~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDF----------------FLRIERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchH----------------HHHHHHHH
Confidence 8888887776553 444556666777666666543 111111 11122222
Q ss_pred HHc-CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 267 EEF-GVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYV 321 (548)
Q Consensus 267 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (548)
... +..--..++--+-..|...++++++..+++.+++.. +.+..+..-++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 211 111122333344445555556666666666666554 334444555555443
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=7e-05 Score=63.24 Aligned_cols=188 Identities=17% Similarity=0.170 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHH
Q 008925 43 KRFKSILSLISKVEKD---G-MKPDSI-LFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEE 117 (548)
Q Consensus 43 g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 117 (548)
.+.++.++++.++... | ..++.. .+..++-+....|+.+.|..+++++... ++-+..+-..-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 4555666666555422 2 334433 4455555666677777777777777655 23333333333333445677777
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 118 SLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQ 197 (548)
Q Consensus 118 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 197 (548)
|+++++.+..++ |.|..++---+...-..|+.-+|++-+.+.++. +..|...|.-|...|...|++++|.-.++++.
T Consensus 105 A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 777777777653 445556655555555666666777777666665 35577777777777777777777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Q 008925 198 NNQVRPNERTCGIIVSGYCKEG---NMEDAMRFLYRMKELE 235 (548)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 235 (548)
-..+. ++..+..+...+.-.| +...|.++|.+.++..
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 55332 4455555555443333 4566777777777654
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=3.9e-05 Score=64.71 Aligned_cols=164 Identities=13% Similarity=0.010 Sum_probs=94.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 008925 278 FSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN 357 (548)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 357 (548)
|..++-+....|+.+.|...++.+...- |.+..+-..-...+-..|++++|+++++.+++.+ +.|.+++..-+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 4444455556666666666666665542 3333333333333445666777777777666654 3344555555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC---CHHH
Q 008925 358 AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIG---LARE 433 (548)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~ 433 (548)
.|+..+|++-+.+.++. +..|...|..|...|...|++++|.-++++++-. .|. +..+..+++.+.-.| +..-
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 66666666666666654 3556677777777777777777777777766642 343 335555666555444 4556
Q ss_pred HHHHHHHHHhccC
Q 008925 434 AKRVLKSAEEDRQ 446 (548)
Q Consensus 434 A~~~~~~~~~~~~ 446 (548)
|.+++.++.+..+
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 6666666665544
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.60 E-value=2.7e-06 Score=68.23 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 311 HVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
.....++..+...|++++|...|+.+...+ +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 344444455555555555555555554432 2234445555555555555555555555555443 33445555555555
Q ss_pred HhcCChHHHHHHHHHHHH
Q 008925 391 GEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~ 408 (548)
...|++++|...|++..+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555554
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=2.9e-05 Score=71.94 Aligned_cols=156 Identities=13% Similarity=0.039 Sum_probs=111.0
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008925 316 LAKGYVRAGEPQKAESILTSMRKYGVHPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK 394 (548)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (548)
....+...|++++|+..++.+.+. .|+ +..+......+...++.++|.+.+++++... |........+..+|.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcC
Confidence 334455678888888888888775 344 4445666777888888888888888888763 333566777888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccccccccc
Q 008925 395 QPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFL 474 (548)
Q Consensus 395 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 474 (548)
++.+|+.+++..... .+-++..|..++.+|...|+..+|....-+.
T Consensus 389 ~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~--------------------------------- 434 (484)
T COG4783 389 KPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG--------------------------------- 434 (484)
T ss_pred ChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH---------------------------------
Confidence 888888888887754 2455668888888888888888877666542
Q ss_pred cccccccccCCCChhhhhhhhhhccc---ccccchhhhhHHh
Q 008925 475 QIPGVVSSEHNGSSAAKIRSQIVLRS---DTVWTATKSLFVN 513 (548)
Q Consensus 475 ~l~~~y~~~~~~~~a~~~~~~~~~~~---g~~w~~~~~~~~~ 513 (548)
|.-.|+|++|..-..+...+. -..|..+...++.
T Consensus 435 -----~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~ 471 (484)
T COG4783 435 -----YALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQ 471 (484)
T ss_pred -----HHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 555677777776555554433 5777777776665
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.51 E-value=4.3e-06 Score=67.03 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=94.0
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008925 332 ILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 332 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (548)
.++++... .| +......++..+...|++++|...|+++...+ +.+...+..+...+...|++++|...+++..+.+
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566654 34 34556778888899999999999999999876 6688899999999999999999999999998753
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 411 VRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 411 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
+.+...+..++.++...|++++|.+.++++.+.+|..
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 4456688889999999999999999999998776543
No 133
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.8e-07 Score=53.37 Aligned_cols=32 Identities=34% Similarity=0.889 Sum_probs=15.5
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 008925 340 GVHPNVVMFTTVISGWCNAVKMQRAMSIYEKM 371 (548)
Q Consensus 340 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 371 (548)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.49 E-value=0.0019 Score=64.64 Aligned_cols=224 Identities=13% Similarity=0.124 Sum_probs=146.0
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHH--HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLV--AALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVD 81 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 81 (548)
.+..+++.+|+.-...+++.. |+.. |...+ -.+.+.|+.++|..+++.....+ +.|..+...+-.+|...|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhh
Confidence 456788999999999998863 4442 33333 34568999999999888877664 337789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCC-C---------H
Q 008925 82 EAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKN-S---------I 151 (548)
Q Consensus 82 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~ 151 (548)
+|..+|+...+. .|+......+..+|.+.+.+.+-.+.--++.+. ++.+...+=++++.....- . .
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 999999999886 567777778888888887765543333333332 2333333333333333221 1 2
Q ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008925 152 EEAWNVVYKMVASG-IQPDAVTYNTLARAYAQYGETYRAEQMLF-EMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLY 229 (548)
Q Consensus 152 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 229 (548)
.-|.+.++++++.+ --.+..-...-.......|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 34556666666654 11111112222334566788999999884 34443334445555566677778888888888888
Q ss_pred HHHhCC
Q 008925 230 RMKELE 235 (548)
Q Consensus 230 ~~~~~~ 235 (548)
++...+
T Consensus 251 ~Ll~k~ 256 (932)
T KOG2053|consen 251 RLLEKG 256 (932)
T ss_pred HHHHhC
Confidence 877765
No 135
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=2.3e-07 Score=52.85 Aligned_cols=31 Identities=35% Similarity=0.799 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008925 60 MKPDSILFNAMINACSESGNVDEAMKIFQKM 90 (548)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 90 (548)
+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.46 E-value=0.0015 Score=61.65 Aligned_cols=414 Identities=11% Similarity=0.070 Sum_probs=246.4
Q ss_pred ccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHH--
Q 008925 6 GKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSE-SGNVDE-- 82 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~-- 82 (548)
+...++++..+++++... .+-....|..-+..-.+.++++....+|.+++.. ..+...|...++.-.+ .|+...
T Consensus 31 qt~~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r 107 (656)
T KOG1914|consen 31 QTQPIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYR 107 (656)
T ss_pred ccCCHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcchHH
Confidence 445789999999999874 3335578999999999999999999999999876 3456778777765433 333333
Q ss_pred --HHHHHHHHHh-cCCCC-CHHHHHHHHHHHh---------ccCChHHHHHHHHHhhhCCCCCCCH-HHHHH------HH
Q 008925 83 --AMKIFQKMKD-SGCKP-TTSTYNTLIKGYG---------NVGKPEESLKLLQLMSQDKNVKPND-RTYNI------LV 142 (548)
Q Consensus 83 --A~~~~~~~~~-~~~~~-~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~------l~ 142 (548)
..+.|+-... .|..+ +-..|+..+..+- ...+++...++|.++.... -.+. ..|+- -+
T Consensus 108 ~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP--m~nlEkLW~DY~~fE~~I 185 (656)
T KOG1914|consen 108 EKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP--MHNLEKLWKDYEAFEQEI 185 (656)
T ss_pred HHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc--cccHHHHHHHHHHHHHHH
Confidence 3344444433 34333 2345665555442 2345667777888876531 1111 12211 11
Q ss_pred H-----H--HHhCCCHHHHHHHHHHHHH--CCCCCCHH---------------HHHHHHHHHHhcC------CH--HHHH
Q 008925 143 R-----A--WCSKNSIEEAWNVVYKMVA--SGIQPDAV---------------TYNTLARAYAQYG------ET--YRAE 190 (548)
Q Consensus 143 ~-----~--~~~~g~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~l~~~~~~~g------~~--~~a~ 190 (548)
. - --+...+..|.++++++.. .|+..... .|..+|.-=...+ .. ....
T Consensus 186 N~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~ 265 (656)
T KOG1914|consen 186 NIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVM 265 (656)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHH
Confidence 1 1 1123356677777777643 23221111 1333332211111 00 1122
Q ss_pred HHHHHHHh-CCCCCCHHHHHH-------HHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC--
Q 008925 191 QMLFEMQN-NQVRPNERTCGI-------IVSGYCKEGN-------MEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDI-- 253 (548)
Q Consensus 191 ~~~~~~~~-~~~~~~~~~~~~-------l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 253 (548)
-.+++.+. -+..|+ .|.. ....+...|+ .+++..+++..++.-...+..+|..+...--..
T Consensus 266 yayeQ~ll~l~~~pe--iWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~ 343 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPE--IWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD 343 (656)
T ss_pred HHHHHHHHHHhcCHH--HHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc
Confidence 22333221 122222 2211 1223334444 456666676665532223333343333221111
Q ss_pred -CChhhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhHHH
Q 008925 254 -KDSDGVDKALTLMEEFG-VKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEP-DIHVFSILAKGYVRAGEPQKAE 330 (548)
Q Consensus 254 -~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 330 (548)
...+.....++.+.... ..|+ .+|..++..-.+..-++.|..+|.++.+.+..+ ++.+.++++.-|+ .++.+-|.
T Consensus 344 ~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~Af 421 (656)
T KOG1914|consen 344 DNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAF 421 (656)
T ss_pred cchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHH
Confidence 12455556666655442 2333 467788888888899999999999999887666 6778888888776 57899999
Q ss_pred HHHHHHHhCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 331 SILTSMRKYGVHPNVVMF-TTVISGWCNAVKMQRAMSIYEKMCEIGINPNL--KTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
++|+--++. .+|...| ...+.-+...++-..|..+|++.+..+++|+. ..|..++.--..-|+..-+.++-+++.
T Consensus 422 rIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 422 RIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 999987664 3454444 67788888899999999999999998666654 679999999999999999999988876
Q ss_pred HC-C--CCCCHHHHHHHHHHHHHcCC
Q 008925 408 EK-G--VRPKKSTIQLVADSWRAIGL 430 (548)
Q Consensus 408 ~~-~--~~p~~~~~~~l~~~~~~~g~ 430 (548)
.. . ..+....-..+++-|.-.+.
T Consensus 500 ~af~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 500 TAFPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred HhcchhhcCCCChHHHHHHHHhhccc
Confidence 42 1 23333334445555554444
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=0.00016 Score=67.10 Aligned_cols=116 Identities=13% Similarity=0.025 Sum_probs=59.4
Q ss_pred HHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 008925 248 KGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQ 327 (548)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (548)
..+...|++++|+..+..+.... +-|+.......+.+...++.++|.+.+++++... +........+..+|.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChH
Confidence 33444555555555555555442 2244444455555555555555555555555542 222344445555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 008925 328 KAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMS 366 (548)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 366 (548)
+|+.+++...... +-|+..|..|..+|...|+..++..
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 5555555555442 3345555555555555555554443
No 138
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.00056 Score=62.14 Aligned_cols=277 Identities=12% Similarity=0.027 Sum_probs=133.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhcc
Q 008925 34 TLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKP-TTSTYNTLIKGYGNV 112 (548)
Q Consensus 34 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 112 (548)
.....+.+..++..|+..+...++.. +.++.-|..-...+...|++++|.--.+.-.+. +| .........+++...
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLAL 130 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhh
Confidence 33445566677777888888777763 334556666666777777777777666555443 12 122333344444444
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHHhcCCHHHHH
Q 008925 113 GKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGI-QPDAVTYNTLA-RAYAQYGETYRAE 190 (548)
Q Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~a~ 190 (548)
++..+|...++.- ..+ ....++..++....... +|...++..|- .++...|++++|.
T Consensus 131 ~~~i~A~~~~~~~----------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 131 SDLIEAEEKLKSK----------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred HHHHHHHHHhhhh----------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 5555555544411 001 11223333333333321 13333443332 4556667777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------------HHHHHHHHHHcCCChh
Q 008925 191 QMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLV-------------VFNSLIKGFLDIKDSD 257 (548)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~~~~~ 257 (548)
+.--.+++.... +......-..++.-.++.+.|...|++.+..+ |+-. .+..-..-..+.|.+.
T Consensus 190 ~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 190 SEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 766666554322 33333333344555667777777777776644 3321 1111222233444444
Q ss_pred hHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 008925 258 GVDKALTLMEEFG---VKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILT 334 (548)
Q Consensus 258 ~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 334 (548)
.|.+.+.+.+... .+++...|.....+..+.|+.++|+.--..+++.+ +.-+..|..-..++...++|++|.+-++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554444444332 12233334444444445555555555444444332 1112233333334444445555555554
Q ss_pred HHHh
Q 008925 335 SMRK 338 (548)
Q Consensus 335 ~~~~ 338 (548)
+..+
T Consensus 346 ~a~q 349 (486)
T KOG0550|consen 346 KAMQ 349 (486)
T ss_pred HHHh
Confidence 4443
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=3e-05 Score=62.70 Aligned_cols=125 Identities=20% Similarity=0.150 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--HHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNV----VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN--LKTYET 385 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ 385 (548)
.|..++..+ ..++...+...++.+.+.. |+. .....+...+...|++++|...|+.+......|+ ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344444444 4777888888888887753 222 2334455677788888888888888887642222 124455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 386 LLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
|...+...|++++|+..++..... ......+...++++.+.|++++|+..|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677888888888888888664322 233446667788888899999998888875
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.30 E-value=5.3e-05 Score=61.29 Aligned_cols=126 Identities=14% Similarity=0.052 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH--HHHHHH
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPD---IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNV--VMFTTV 351 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l 351 (548)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......|+. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3667777777777777653 333 223344556777778888888888777775422222 234456
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008925 352 ISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVM 406 (548)
Q Consensus 352 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (548)
...+...|++++|+..++..... ......+..++.+|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66777778888888877664322 233445666777778888888888777654
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=3.6e-05 Score=72.04 Aligned_cols=124 Identities=15% Similarity=0.069 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (548)
....|+..+...++++.|+.+|+++.+.. |+. ...++..+...++..+|++++++.++.. +.+...+...+..|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666667778888888888888753 443 3346666767777888888888888653 556677777777788
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 392 EAKQPWRAEELLQVMEEKGVRPKK-STIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
..++++.|+.+.+++.+. .|+. .+|..++.+|...|++++|+..++.++
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888888874 4554 488888888888888888888888776
No 142
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=0.0038 Score=60.73 Aligned_cols=205 Identities=9% Similarity=0.067 Sum_probs=120.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----------HHHhcCChHHHHHHHHHHHhcCC
Q 008925 26 RPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMIN----------ACSESGNVDEAMKIFQKMKDSGC 95 (548)
Q Consensus 26 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~g~~~~A~~~~~~~~~~~~ 95 (548)
.|.+..|..|.......-+++.|...|-+.... +.......|-. .-+--|++++|.+++-++.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr-- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR-- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh--
Confidence 466777888888777777777777777665321 11111111111 112247788888887776544
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008925 96 KPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNT 175 (548)
Q Consensus 96 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (548)
...+..+.+.|++-...++++.--.+..-..-...|+.+...+.....|++|.++|..-.. . ..
T Consensus 764 -------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~ 827 (1189)
T KOG2041|consen 764 -------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---EN 827 (1189)
T ss_pred -------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---Hh
Confidence 2345566677777777766654322111111235677788888877888888887766432 1 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 008925 176 LARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKD 255 (548)
Q Consensus 176 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 255 (548)
.+.++.+..++++-+.+.+.+. .+...+-.+..++.+.|.-++|.+.|-+... |. ..+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHHH
Confidence 4566666666666555554443 3556667777888888888888777644321 21 23445566666
Q ss_pred hhhHHHHHHH
Q 008925 256 SDGVDKALTL 265 (548)
Q Consensus 256 ~~~a~~~~~~ 265 (548)
+.+|.++-+.
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 6666665543
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=6.9e-05 Score=70.20 Aligned_cols=124 Identities=18% Similarity=0.158 Sum_probs=63.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008925 102 YNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYA 181 (548)
Q Consensus 102 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 181 (548)
...|+..+...++++.|+.+|+++.+. .|+ ....+++.+...++-.+|++++.+.++.. +.+...+......+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 334444444455555555555555443 233 22234455555555555555555555432 334444444455555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 182 QYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMK 232 (548)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 232 (548)
+.++++.|+++.+++....+. +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555555666555555554222 34455555566666666666665555543
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.0015 Score=59.53 Aligned_cols=279 Identities=14% Similarity=0.059 Sum_probs=173.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC
Q 008925 69 AMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSK 148 (548)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (548)
.....+.+..++..|+..+..+++.. +-+..-|..-+..+...|++++|.--.++-.+.. +.......-..+++...
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCHLAL 130 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhhhhh
Confidence 34445667778888999999888874 3456667777777888888888876665554432 11223344445555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH-HHHHhcCCHHHHHH
Q 008925 149 NSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQV-RPNERTCGIIV-SGYCKEGNMEDAMR 226 (548)
Q Consensus 149 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~A~~ 226 (548)
++..+|.+.++. ...+ ....++..++.+..... +|.-..+..+- .++.-.|++++|.+
T Consensus 131 ~~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 131 SDLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 666666655551 1111 11223333333333222 23334444443 56677899999998
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHH-------------HHHHHHHHHhCCChhH
Q 008925 227 FLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVT-------------FSTIMDAWSSAGLMGK 293 (548)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~ 293 (548)
.--..++.+ ..+......-..++....+.+.+...+++.+..+ |+... +..-..-..+.|++..
T Consensus 191 ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 191 EAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 887777754 3344444444445556778888999998888765 33221 1112233457888999
Q ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHH
Q 008925 294 CQEIFDDMVKAG---IEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN-VVMFTTVISGWCNAVKMQRAMSIYE 369 (548)
Q Consensus 294 a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 369 (548)
|.+.|.+.+..+ ..++...|.....+..+.|+..+|+.--+...+.+ |. +..+..-..++...+++++|.+-|+
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888653 34455667777778888999999998888887642 21 2234444556667788999999999
Q ss_pred HHHHcC
Q 008925 370 KMCEIG 375 (548)
Q Consensus 370 ~~~~~~ 375 (548)
++.+..
T Consensus 346 ~a~q~~ 351 (486)
T KOG0550|consen 346 KAMQLE 351 (486)
T ss_pred HHHhhc
Confidence 888754
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.19 E-value=0.0097 Score=59.87 Aligned_cols=194 Identities=10% Similarity=0.028 Sum_probs=127.0
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
+.+.|+.++|..+++.....+.. |..+...+-.+|...++.++|..+|++.... -|+......+..+|.+.+++.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999888877655444 7788999999999999999999999999875 56677778888899998887665
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccC----------ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 008925 84 MKIFQKMKDSGCKPTTSTYNTLIKGYGNVG----------KPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEE 153 (548)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (548)
.++--++-+. ++.++..+-++++.+...- -..-|.+.++.+...+|.-.+..-.......+...|.+++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 5444444332 2334555555555554321 1234566677776655422222223333445566788999
Q ss_pred HHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008925 154 AWNVVYK-MVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQV 201 (548)
Q Consensus 154 a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 201 (548)
|+.++.- ..+.-...+...-+.-+..+...+++.+..++-.++...+.
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 9988843 33332223333444555666777777777777777766654
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.16 E-value=4.2e-05 Score=56.72 Aligned_cols=93 Identities=18% Similarity=0.109 Sum_probs=51.8
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAI 428 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 428 (548)
..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++...+.. +.+...+..++.++...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344445555566666666666665543 3333455555666666666666666666655432 22223555566666666
Q ss_pred CCHHHHHHHHHHHHh
Q 008925 429 GLAREAKRVLKSAEE 443 (548)
Q Consensus 429 g~~~~A~~~~~~~~~ 443 (548)
|++++|...++++.+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666665543
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.10 E-value=0.00013 Score=57.83 Aligned_cols=97 Identities=9% Similarity=-0.095 Sum_probs=67.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWR 426 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (548)
..-.+..-+...|++++|.++|+-+.... +-+...|..|.-++...|++++|+..|..+.... +-++..+..++.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33445555667777777777777777765 4566667777777777777777777777777643 234556777777777
Q ss_pred HcCCHHHHHHHHHHHHhcc
Q 008925 427 AIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~ 445 (548)
..|+.+.|++.|+.+...-
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 7777777777777766443
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.09 E-value=0.00011 Score=57.33 Aligned_cols=95 Identities=13% Similarity=0.016 Sum_probs=43.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIGINPN---LKTYETLLWGYGEAKQPWRAEELLQVMEEKGVR-P-KKSTIQLVAD 423 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~ 423 (548)
..++..+...|++++|.+.|+++.... +.+ ...+..++.++...|++++|...++.+...... | ....+..++.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444444555555555555554432 111 223444555555555555555555555432100 1 1234444455
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 008925 424 SWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 424 ~~~~~g~~~~A~~~~~~~~~~ 444 (548)
++...|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555554433
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.08 E-value=0.00029 Score=55.87 Aligned_cols=97 Identities=10% Similarity=0.000 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 310 IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
....-.+...+...|++++|..+|+.+...+ +-+..-|..|..++...|++++|+..|..+.... +.|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3444555666777888888888888887754 2345567778888888888888888888888776 5677788888888
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 008925 390 YGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~ 408 (548)
+...|+.+.|.+.|+..+.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887764
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.07 E-value=7.2e-05 Score=65.01 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=59.4
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQP 396 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (548)
+.-+.+.+++++|+..|.++++.. +-|.+-|..-..+|++.|.++.|++-.+.++..+ +....+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 344555666666666666666642 2244455556666666666666666666666643 23345666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH
Q 008925 397 WRAEELLQVMEEKGVRPKKSTI 418 (548)
Q Consensus 397 ~~A~~~~~~~~~~~~~p~~~~~ 418 (548)
++|++.|++.++ +.|+.++|
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHH
Confidence 666666666665 45665544
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.03 E-value=1.3e-05 Score=57.75 Aligned_cols=81 Identities=27% Similarity=0.249 Sum_probs=57.3
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 008925 358 AVKMQRAMSIYEKMCEIGIN-PNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAK 435 (548)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 435 (548)
.|+++.|+.+++++.+.... ++...+..++.+|.+.|++++|+.++++ .+. .|+ ......++.++...|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 57888889999888876421 2445566688888899999999998887 322 233 345556688888999999999
Q ss_pred HHHHHH
Q 008925 436 RVLKSA 441 (548)
Q Consensus 436 ~~~~~~ 441 (548)
++++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 888763
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.01 E-value=0.0003 Score=54.77 Aligned_cols=93 Identities=14% Similarity=-0.014 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CCCHHHHHHHH
Q 008925 314 SILAKGYVRAGEPQKAESILTSMRKYGVHPN----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI--NPNLKTYETLL 387 (548)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~ 387 (548)
..++..+.+.|++++|...|+.+.... |+ ...+..++.++...|+++.|...|+.+....- +.....+..++
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 334444444555555555555444321 11 12333444445555555555555555444210 00123344444
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 008925 388 WGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~ 408 (548)
.++.+.|++++|...++++.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 445555555555555555544
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.00 E-value=1.3e-05 Score=57.80 Aligned_cols=81 Identities=19% Similarity=0.262 Sum_probs=48.0
Q ss_pred cCChhhHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 7 KGKPHEAHYIFNCLIEEGHR-PTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMK 85 (548)
Q Consensus 7 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 85 (548)
+|+++.|+.+|+.+++..+. ++...+..++.++.+.|++++|..++++ .+.+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 56777777777777775432 1344455567777777777777777766 2221 1122333444666777777777777
Q ss_pred HHHH
Q 008925 86 IFQK 89 (548)
Q Consensus 86 ~~~~ 89 (548)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7664
No 154
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.99 E-value=6.4e-05 Score=67.89 Aligned_cols=261 Identities=16% Similarity=0.122 Sum_probs=129.3
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHH--HC--CC-CCCHHHHHHHHHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTL----ITYTTLVAALTRQKRFKSILSLISKVE--KD--GM-KPDSILFNAMINAC 74 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~--~~-~~~~~~~~~l~~~~ 74 (548)
+++.|+....+.+|+.+++.|.. |. ..|..|+.+|.-.+++++|++....=+ .+ |- .-...+-..|...+
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 57889999999999999988754 44 357777888888889999988664311 11 10 11233444566666
Q ss_pred HhcCChHHHHHHHHHH----HhcCCC-CCHHHHHHHHHHHhccCC--------------------hHHHHHHHHHhhhC-
Q 008925 75 SESGNVDEAMKIFQKM----KDSGCK-PTTSTYNTLIKGYGNVGK--------------------PEESLKLLQLMSQD- 128 (548)
Q Consensus 75 ~~~g~~~~A~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~~- 128 (548)
--.|.+++|+....+- .+.|-. .....+-.+...|...|+ ++.|.++|..-.+.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888877654332 222211 122345556666665543 22233333221110
Q ss_pred ---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 008925 129 ---KNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVA----SGIQ-PDAVTYNTLARAYAQYGETYRAEQMLFEMQN-- 198 (548)
Q Consensus 129 ---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 198 (548)
+..-.-...|..|...|.-.|+++.|+...+.-+. .|-. .....+..|..++.-.|+++.|.+.|+....
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 00000112334444444445556666554443221 1100 1123445555566666666666665554321
Q ss_pred --CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 008925 199 --NQ-VRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL----E-VHPNLVVFNSLIKGFLDIKDSDGVDKALTL 265 (548)
Q Consensus 199 --~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 265 (548)
.| -.....+...|...|.-..++++|+.++.+-+.. + ..-...++-+|..+|...|..++|....+.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 11 1112334445555555555556665555443221 0 111223444555555555555555544443
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.98 E-value=0.00014 Score=53.74 Aligned_cols=94 Identities=20% Similarity=0.184 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
+..++..+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445555666666666766666666542 2233455556666666667777777776666653 3444566666666666
Q ss_pred cCChHHHHHHHHHHHH
Q 008925 393 AKQPWRAEELLQVMEE 408 (548)
Q Consensus 393 ~g~~~~A~~~~~~~~~ 408 (548)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777776666554
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.97 E-value=0.00029 Score=66.40 Aligned_cols=90 Identities=8% Similarity=0.048 Sum_probs=46.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 008925 283 DAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQ 362 (548)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 362 (548)
..+...|+++.|+..|.++++.+ +.+...|..+..+|...|++++|+..+++++... +.+...|..++.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 33444555555555555555543 3444455555555555555555555555555432 123334555555555555555
Q ss_pred HHHHHHHHHHHc
Q 008925 363 RAMSIYEKMCEI 374 (548)
Q Consensus 363 ~A~~~~~~~~~~ 374 (548)
+|+..|+++++.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 555555555553
No 157
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.96 E-value=0.00012 Score=66.14 Aligned_cols=132 Identities=10% Similarity=0.044 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh----CCC-CCCHH
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVK----AGI-EPDIHVFSILAKGYVRAGEPQKAESILTSMRK----YGV-HPNVV 346 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~ 346 (548)
.|..+...|.-.|+++.|+...+.-+. .|- .....++..|..++.-.|+++.|.+.++.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344555555566778888776654432 111 11234667777888888888888877765532 221 11234
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEI----G-INPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
+.-+|...|.-..++++|+.++.+-+.. + ..-....+++|..++...|..++|+.+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5566777777777788888877764421 1 112345677888888888888888887776553
No 158
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.94 E-value=0.0041 Score=50.20 Aligned_cols=131 Identities=15% Similarity=0.066 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC---CHHHH
Q 008925 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINP---NLKTY 383 (548)
Q Consensus 307 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 383 (548)
.|+...-..|..++...|+..+|...|++...--+..|......+..+....+++..|...++++.+.. | ++.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 466666666777777777777777777777654444566666677777777777777777777776642 2 12334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 384 ETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
..+.+.+...|.+.+|...|+..... .|+...-......+.++|+.++|..-+...
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 45667777777777777777777663 466665555666677777766666555443
No 159
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.91 E-value=0.019 Score=53.26 Aligned_cols=425 Identities=13% Similarity=0.141 Sum_probs=215.5
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHH------HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLI------TYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINA--CS 75 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 75 (548)
+-+++++.+|..+|.++.+.- ..+.. .-+.++.+|.. .+.+.....+....+. .|. ..|-.|..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~~-s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FGK-SAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cCC-chHHHHHHHHHHH
Confidence 446788888888888887652 22322 23445555543 3555555555555543 221 223333332 34
Q ss_pred hcCChHHHHHHHHHHHhc--CCCCC---HHH---------HHHHHHHHhccCChHHHHHHHHHhhhCC---CCCCCHHHH
Q 008925 76 ESGNVDEAMKIFQKMKDS--GCKPT---TST---------YNTLIKGYGNVGKPEESLKLLQLMSQDK---NVKPNDRTY 138 (548)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~--~~~~~---~~~---------~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~ 138 (548)
+.+.+++|++.+...... +..+. ... =+..+.++...|++.++..+++++...- ....+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678888888887776554 22221 111 1345666777888888888887776531 122466677
Q ss_pred HHHHHHHHhCC--------C-------HHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHH
Q 008925 139 NILVRAWCSKN--------S-------IEEAWNVVYKMVASG------IQPDAVTYNTLARAYAQYG--ETYRAEQMLFE 195 (548)
Q Consensus 139 ~~l~~~~~~~g--------~-------~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~ 195 (548)
+.++-.+.++= . ++.+.-+.+++.... +.|.......++.-..-.- ...--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 76544443211 0 111111112221110 1111111111111111100 00111122222
Q ss_pred HHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcC
Q 008925 196 MQNNQVRPNER-TCGIIVSGYCKEGNMEDAMRFLYRMKELEVHP----NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFG 270 (548)
Q Consensus 196 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 270 (548)
-...-+.|+.. +...+...+.. +.+++..+-+.+....+.+ -..++..++....+.++...|.+.+..+....
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 22222333322 22233333333 5566666655554432111 12467777777778888888888888777654
Q ss_pred CCCCHHHHHHH-------HHHHH----hCCChhHHHHHHHHHHHcCCCCCHH-HHHHHH---HHHHHcCC-HhHHHHHHH
Q 008925 271 VKPDVVTFSTI-------MDAWS----SAGLMGKCQEIFDDMVKAGIEPDIH-VFSILA---KGYVRAGE-PQKAESILT 334 (548)
Q Consensus 271 ~~~~~~~~~~l-------~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~---~~~~~~g~-~~~A~~~~~ 334 (548)
|+...-.-+ -+..+ ...+...-+.+|+.....+ .|.. ....|+ .-+.+.|. -++|+.+++
T Consensus 329 --p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 329 --PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred --CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 333221111 12222 1112333344555555443 2222 222222 33455565 788999999
Q ss_pred HHHhCCCCCCHHHHHHHHH----HHhc---cCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHH--HHhcCChHHHHH
Q 008925 335 SMRKYGVHPNVVMFTTVIS----GWCN---AVKMQRAMSIYEKMCEIGINPNL----KTYETLLWG--YGEAKQPWRAEE 401 (548)
Q Consensus 335 ~~~~~~~~p~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~--~~~~g~~~~A~~ 401 (548)
.+++-. +-|...-|.+.. .|.+ ...+..-..+-+-+.+.|++|-. ..-+.|.+| +...|++.++.-
T Consensus 405 ~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ 483 (549)
T PF07079_consen 405 LILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL 483 (549)
T ss_pred HHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 988742 224433333322 2221 12233334444444466776643 334444443 457899998876
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 402 LLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
+-.=..+ +.|++.+++.++-++....++++|..++.+.+
T Consensus 484 ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 484 YSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 5544444 78999999999999999999999999999864
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.90 E-value=0.0048 Score=56.31 Aligned_cols=92 Identities=18% Similarity=0.123 Sum_probs=44.7
Q ss_pred HHHHHhC-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----H-HHH
Q 008925 142 VRAWCSK-NSIEEAWNVVYKMVAS----GIQPD--AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPN-----E-RTC 208 (548)
Q Consensus 142 ~~~~~~~-g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~-~~~ 208 (548)
...|... |++++|++.|++..+. + .+. ..++..++..+.+.|++++|.++|+++.......+ . ..+
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 3344455 6666666666665432 1 111 23344556666666777777777766654322111 1 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 209 GIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 209 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
...+-++...||+..|...|++....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22333455566666666666666543
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.90 E-value=0.00056 Score=64.49 Aligned_cols=92 Identities=10% Similarity=-0.016 Sum_probs=66.1
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008925 246 LIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGE 325 (548)
Q Consensus 246 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (548)
....+...|+++.|+..++++++..+. +...+..+..++...|++++|+..++++++.. +.+...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 345556677777777777777776532 56667777777777777888877777777765 4566677777777777778
Q ss_pred HhHHHHHHHHHHhC
Q 008925 326 PQKAESILTSMRKY 339 (548)
Q Consensus 326 ~~~A~~~~~~~~~~ 339 (548)
+++|+..|+++++.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 87787777777764
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.90 E-value=0.00093 Score=55.89 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPN--VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
.+..++..+...|++++|...|+++.+....+. ...+..++..+...|++++|...++++++.. +.+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445555555556666666666665554321111 2345555566666666666666666666542 3334445555555
Q ss_pred HHhcCC
Q 008925 390 YGEAKQ 395 (548)
Q Consensus 390 ~~~~g~ 395 (548)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 555554
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.89 E-value=0.0011 Score=65.41 Aligned_cols=69 Identities=14% Similarity=-0.019 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 379 NLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
+...+..+.-.....|++++|...++++.+. .|+...|..++.++...|+.++|...++++...+|..|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 3444555544444455566666666655553 24545555555555566666666666666555555544
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.89 E-value=0.0013 Score=64.96 Aligned_cols=145 Identities=11% Similarity=0.057 Sum_probs=106.1
Q ss_pred CCCCCHHHHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHH
Q 008925 270 GVKPDVVTFSTIMDAWSSA-----GLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAG--------EPQKAESILTSM 336 (548)
Q Consensus 270 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~ 336 (548)
..+.+...|...+.+.... ++...|..+|+++++.. |.....+..+..++.... +...+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4556788899988876533 23779999999999985 445566666655554322 233444444444
Q ss_pred HhC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008925 337 RKY-GVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK 415 (548)
Q Consensus 337 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 415 (548)
... ....+...+..+.......|++++|...++++++.+ |+...|..++..+...|+.++|.+.++++... .|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 332 123455677777777777899999999999999975 68899999999999999999999999999874 5766
Q ss_pred HHHH
Q 008925 416 STIQ 419 (548)
Q Consensus 416 ~~~~ 419 (548)
.+|.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 6653
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.87 E-value=0.0004 Score=57.92 Aligned_cols=79 Identities=9% Similarity=-0.023 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHP--NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
.+..++..+...|++++|+..|++.......| ...++..+...+...|++++|+..+++++... +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 34445555555566666666666555432111 12345555556666666666666666665542 2233444444444
Q ss_pred HH
Q 008925 390 YG 391 (548)
Q Consensus 390 ~~ 391 (548)
+.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 44
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00029 Score=61.41 Aligned_cols=97 Identities=14% Similarity=0.225 Sum_probs=71.9
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChH
Q 008925 284 AWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN-VVMFTTVISGWCNAVKMQ 362 (548)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 362 (548)
-..+.+++.+|+..|.++++.. +-|..-|..-..+|.+.|.++.|++-.+..+..+ |. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHH
Confidence 3456678888888888888775 5667777777888888888888888888777743 33 457888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH
Q 008925 363 RAMSIYEKMCEIGINPNLKTYET 385 (548)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~ 385 (548)
+|++.|+++++. .|+-.+|..
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHH
Confidence 888888888875 455555443
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.87 E-value=0.002 Score=58.76 Aligned_cols=179 Identities=14% Similarity=0.161 Sum_probs=103.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHh----CCCCCC--HHHHH
Q 008925 281 IMDAWSSAGLMGKCQEIFDDMVKA----GIEPD-IHVFSILAKGYVRAGEPQKAESILTSMRK----YGVHPN--VVMFT 349 (548)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~ 349 (548)
....|...+++++|...|.++... +-+.+ ...|.....+|.+. ++++|...++++.. .| .|+ ...+.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~ 118 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLK 118 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence 334444555555555555544321 10000 11233333333333 66666666665543 22 122 22556
Q ss_pred HHHHHHhcc-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHH-
Q 008925 350 TVISGWCNA-VKMQRAMSIYEKMCEI----GINPN--LKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-----KKS- 416 (548)
Q Consensus 350 ~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~- 416 (548)
.+...|... |++++|++.|+++.+. + .+. ..++..++..+.+.|++++|+++|++........ +..
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 677778888 8999999999998863 2 111 2356778888999999999999999987643221 122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHh
Q 008925 417 TIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHR 462 (548)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (548)
.+...+-++...|+.-.|.+.+++..+.+|.+..-..-.....|.+
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 3344455677889999999999999888877765433334444444
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.0013 Score=54.93 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 137 TYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD--AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSG 214 (548)
Q Consensus 137 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (548)
.+..++..+...|++++|...|++..+....+. ...+..++.++...|++++|...+++..+.... +...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344444444444555555555554443321111 234444445555555555555555554443221 33334444444
Q ss_pred HHhcCC
Q 008925 215 YCKEGN 220 (548)
Q Consensus 215 ~~~~g~ 220 (548)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 444444
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.85 E-value=0.0083 Score=48.51 Aligned_cols=130 Identities=14% Similarity=0.060 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHH
Q 008925 96 KPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQ-PDAVTYN 174 (548)
Q Consensus 96 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~ 174 (548)
.|++...-.|..++.+.|+..+|...|++.... -+-.|......+.++....+++..|...++++.+.+.. .++.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 466666667778888888888888888877653 35566777777777888888888888888887765310 1234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008925 175 TLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFL 228 (548)
Q Consensus 175 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 228 (548)
.+.+.+...|.+.+|+.-|+...+.-+ +...--.....+.+.|+.+++..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHHHH
Confidence 667788888888888888888777543 3333333444556667665554433
No 170
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.85 E-value=3.2e-05 Score=44.76 Aligned_cols=32 Identities=34% Similarity=0.824 Sum_probs=15.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 008925 348 FTTVISGWCNAVKMQRAMSIYEKMCEIGINPN 379 (548)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 379 (548)
|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
No 171
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0013 Score=57.73 Aligned_cols=101 Identities=12% Similarity=0.141 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---cCChHHHHHHHHHHHHcCCCCCHHHH
Q 008925 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN---AVKMQRAMSIYEKMCEIGINPNLKTY 383 (548)
Q Consensus 307 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~ 383 (548)
|.|...|..|...|...|+.+.|..-|.+..+.. .++...+..+..++.. .....++..+|++++..+ +.|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 6667777777777777777777777777776642 3345555555555432 223566777777777765 5566666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 384 ETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66777777777777777777777764
No 172
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.82 E-value=0.00029 Score=63.91 Aligned_cols=129 Identities=12% Similarity=0.100 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR-AGEPQKAESILTSMRKYGVHPNVVMFTTVISGW 355 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 355 (548)
+|..++....+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|..+|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444445555555555554322 2223333333333222 33344455555555443 233344444455555
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 356 CNAVKMQRAMSIYEKMCEIGINPNL---KTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
...++.+.|..+|++.+.. ++++. ..|...+..-.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443 12211 2444444444455555555555554444
No 173
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.81 E-value=4.1e-05 Score=44.28 Aligned_cols=33 Identities=39% Similarity=0.536 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008925 382 TYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK 414 (548)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 414 (548)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999997
No 174
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.81 E-value=4.4e-05 Score=43.78 Aligned_cols=32 Identities=41% Similarity=0.637 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 008925 382 TYETLLWGYGEAKQPWRAEELLQVMEEKGVRP 413 (548)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 413 (548)
+|+.++.+|.+.|+++.|..+|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.80 E-value=0.00055 Score=62.14 Aligned_cols=133 Identities=8% Similarity=0.087 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINA-CSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKG 108 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (548)
.+|..+++..-+.+..+.|+.+|.++.+.+ ..+..+|...... +...++.+.|.++|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666777777777777777777776442 2233344443333 22345556677777777665 45566667777777
Q ss_pred HhccCChHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008925 109 YGNVGKPEESLKLLQLMSQDKNVKP-NDRTYNILVRAWCSKNSIEEAWNVVYKMVAS 164 (548)
Q Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 164 (548)
+...++.+.|..+|++....-.... ....|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777765411111 1236666666666667777777766666654
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.77 E-value=0.024 Score=50.12 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=29.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HH---HHHHHHHHhccCChHHHHHHHHHhhhCC
Q 008925 70 MINACSESGNVDEAMKIFQKMKDSGCKPTT-ST---YNTLIKGYGNVGKPEESLKLLQLMSQDK 129 (548)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 129 (548)
....+...|++++|.+.|+++... .|+. .. .-.++.++.+.+++++|...+++..+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 334444556666666666666553 1221 11 1234455556666666666666665543
No 177
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.77 E-value=0.03 Score=51.00 Aligned_cols=306 Identities=17% Similarity=0.165 Sum_probs=200.8
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChHHHHH
Q 008925 10 PHEAHYIFNCLIEEGHRPTLITYTTLVAALT--RQKRFKSILSLISKVEKDGMKPDSILFNAMINAC--SESGNVDEAMK 85 (548)
Q Consensus 10 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~ 85 (548)
+..+...|..-.+. ..|..|-..+. -.||-..|.++-.+..+. +..|...+..|+.+. .-.|+++.|.+
T Consensus 69 P~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~ 141 (531)
T COG3898 69 PYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARK 141 (531)
T ss_pred cHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHH
Confidence 34455666654432 23445544443 568888888888776543 345666666666544 45799999999
Q ss_pred HHHHHHhcCCCCCHHHHH----HHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 008925 86 IFQKMKDSGCKPTTSTYN----TLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKM 161 (548)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 161 (548)
-|+.|.. |+.+-. .|.-.-.+.|..+.|.++-+..... -+.-...+...+...+..|+++.|+++++.-
T Consensus 142 kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 142 KFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 9999986 333332 2333334679999999988887654 2344578899999999999999999999987
Q ss_pred HHCC-CCCCHHH--HHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 162 VASG-IQPDAVT--YNTLARAY---AQYGETYRAEQMLFEMQNNQVRPNERT-CGIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 162 ~~~~-~~~~~~~--~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
.... +.++..- -..|+.+- .-..+...|...-.+..+. .||..- -..-..++.+.|+..++-.+++.+-+.
T Consensus 215 ~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 215 RAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 6543 2334321 12232221 1223566676666655543 444322 223347788999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 008925 235 EVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEF-GVKP-DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHV 312 (548)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 312 (548)
..+|++. .. ..+.+.|+ .+..-++..... ..+| +..+...+..+-...|++..|..--+..... .|....
T Consensus 293 ePHP~ia--~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~ 364 (531)
T COG3898 293 EPHPDIA--LL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESA 364 (531)
T ss_pred CCChHHH--HH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhH
Confidence 6555542 21 12334443 444444443322 1333 4566777888888999999998888877765 688888
Q ss_pred HHHHHHHHHHc-CCHhHHHHHHHHHHhC
Q 008925 313 FSILAKGYVRA-GEPQKAESILTSMRKY 339 (548)
Q Consensus 313 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 339 (548)
|..|...-... |+-.++...+.+..+.
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 88888766554 9999999999998874
No 178
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.76 E-value=6.1e-05 Score=43.20 Aligned_cols=32 Identities=41% Similarity=0.950 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 008925 66 LFNAMINACSESGNVDEAMKIFQKMKDSGCKP 97 (548)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 97 (548)
+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 179
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.76 E-value=0.00015 Score=49.95 Aligned_cols=64 Identities=16% Similarity=0.026 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcc
Q 008925 380 LKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIG-LAREAKRVLKSAEEDR 445 (548)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 445 (548)
..+|..++..+...|++++|+..|++.++. .|+ ...+..++.++...| ++++|++.++++.+.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 445555555566666666666666665553 233 335555556666665 4666666666555443
No 180
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.75 E-value=0.00067 Score=64.01 Aligned_cols=124 Identities=17% Similarity=0.166 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008925 95 CKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNV-KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTY 173 (548)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 173 (548)
.+.+......++..+....+.+.+..++.+....... .--..+..++++.|.+.|..++++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3456666777777777777788888887777654211 112345568888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008925 174 NTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKE 218 (548)
Q Consensus 174 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (548)
+.|+..+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888777666555666666655555544
No 181
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.74 E-value=0.00015 Score=49.12 Aligned_cols=60 Identities=15% Similarity=0.002 Sum_probs=38.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 386 LLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
++..+...|++++|+..|+++++.. |+ ...+..++.++...|++++|+.+++++.+.+|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4455666777777777777776643 43 336666677777777777777777776655543
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.73 E-value=0.0055 Score=54.17 Aligned_cols=184 Identities=9% Similarity=0.068 Sum_probs=114.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSIL---FNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNT 104 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 104 (548)
+...+...+..+...|++++|.+.|+++.... |-+... .-.++.++.+.+++++|...+++..+.........+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 45555556777788999999999999998863 323332 24567888999999999999999988632111223333
Q ss_pred HHHHHhc--cC---------------C---hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008925 105 LIKGYGN--VG---------------K---PEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS 164 (548)
Q Consensus 105 l~~~~~~--~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 164 (548)
.+.+.+. .+ + ..+|+..|+++.+. -|+. .-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~S-------------~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPNS-------------QYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcCC-------------hhHHHHHHHHHHHHHH
Confidence 3333221 11 1 23566666666654 2332 2233444433333221
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 165 GIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQ--VRPNERTCGIIVSGYCKEGNMEDAMRFLYRMK 232 (548)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 232 (548)
=...-..+.+.|.+.|.+..|..-++.+.+.- .+........++.+|...|..++|..+...+.
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 01111246677888888888888888888752 23345667778888888899888888776554
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.72 E-value=0.0013 Score=54.81 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 137 TYNILVRAWCSKNSIEEAWNVVYKMVASGIQP--DAVTYNTLARAYAQYGETYRAEQMLFEMQN 198 (548)
Q Consensus 137 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 198 (548)
.+..++..+...|++++|+..|++.+.....+ ...++..+..++...|++++|+..++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444555555555555544332111 122444455555555555555555555444
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.71 E-value=0.00065 Score=64.09 Aligned_cols=124 Identities=15% Similarity=0.147 Sum_probs=85.1
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 008925 235 EVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEF--GVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHV 312 (548)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 312 (548)
+.+.+......++..+....+.+.+..++..+... ....-+.|..++++.|...|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666777777777777777777777776654 2222234556778888888888888888887777788888888
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA 358 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 358 (548)
++.|+..+.+.|++..|.++...|...+...+..++.-.+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888877776655555555554444444443
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.69 E-value=0.00019 Score=49.40 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 008925 345 VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK-QPWRAEELLQVMEE 408 (548)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 408 (548)
...|..++..+...|++++|+..|+++++.. +.+...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4456666666666666666666666666654 445556666666666666 56666666666554
No 186
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.066 Score=52.57 Aligned_cols=337 Identities=13% Similarity=0.093 Sum_probs=190.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCC--------CHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCC
Q 008925 61 KPDSILFNAMINACSESGNVDEAMKIFQKMKDS-GCKP--------TTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNV 131 (548)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 131 (548)
.|.+..|..|.......-.++.|...|-+.... |++. +...-.+=+.+ --|++++|+++|-.+.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh---
Confidence 577888998888877777888888877765442 2211 00011111222 248899999999887543
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008925 132 KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD----AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERT 207 (548)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 207 (548)
| ..+..+.+.|++-...++++.- |-..| ...++.+...+.....|++|.+.|..-...
T Consensus 764 --D-----LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------- 825 (1189)
T KOG2041|consen 764 --D-----LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------- 825 (1189)
T ss_pred --h-----hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 2 3456677788887776665431 11111 457888888899999999999988765321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 208 CGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSS 287 (548)
Q Consensus 208 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (548)
...+.++.+..++++-..+.+.+ +.+....-.+..++.+.|.-++|.+.+-+... |. ..+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHH
Confidence 23566677777777665555443 45566777788888888888888776643221 11 34567778
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHH--------------HHHHHHHHcCCHhHHHHHHHHHHh----CCCCCCHH---
Q 008925 288 AGLMGKCQEIFDDMVKAGIEPDIHVFS--------------ILAKGYVRAGEPQKAESILTSMRK----YGVHPNVV--- 346 (548)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~--------------~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~--- 346 (548)
.+++.+|.++.++.. -|...+.. --|..+.+.|+.-.|-+++.+|-+ .+.+|-..
T Consensus 891 LnQW~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kkl 966 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKL 966 (1189)
T ss_pred HHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHH
Confidence 888888887766543 22222211 123445566665556666655543 23322211
Q ss_pred -HHHHHH-HHH----------hccCChHHHHHHHHHHHHc-------CCCCCHHHHH--HHHHHHHhcCChHHHHHHHHH
Q 008925 347 -MFTTVI-SGW----------CNAVKMQRAMSIYEKMCEI-------GINPNLKTYE--TLLWGYGEAKQPWRAEELLQV 405 (548)
Q Consensus 347 -~~~~l~-~~~----------~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~ 405 (548)
.+.+++ .-+ -.+|..++|..+++.-.-. +.-.....|. .|..--...|..+.|+..--.
T Consensus 967 YVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~ 1046 (1189)
T KOG2041|consen 967 YVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALI 1046 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhh
Confidence 111111 111 1356666777655543321 0111222333 333344456777777765544
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHHc---CCHHHHHHHHH
Q 008925 406 MEEK-GVRPKKSTIQLVADSWRAI---GLAREAKRVLK 439 (548)
Q Consensus 406 ~~~~-~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~ 439 (548)
+.+. .+-|...+|..++-+-+.. |--.+|.--++
T Consensus 1047 L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1047 LSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred hccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 4432 2445566776665554444 44444444333
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.66 E-value=0.00014 Score=49.86 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=28.5
Q ss_pred cccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008925 5 VGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKD 58 (548)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 58 (548)
++.|++++|+..|+.+.+..+. +...+..++.++.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555555554333 4455555555555555555555555555543
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.65 E-value=0.001 Score=48.90 Aligned_cols=81 Identities=16% Similarity=0.363 Sum_probs=63.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHhcCCCCCHHH
Q 008925 31 TYTTLVAALTRQKRFKSILSLISKVEKDGM-KPDSILFNAMINACSESG--------NVDEAMKIFQKMKDSGCKPTTST 101 (548)
Q Consensus 31 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~ 101 (548)
+....+..+...+++...-.+|+.+.+.|+ -|+..+|+.++...++.. ++-+.+.+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777999999999999999998 889999999998776542 34567788888888888888888
Q ss_pred HHHHHHHHhc
Q 008925 102 YNTLIKGYGN 111 (548)
Q Consensus 102 ~~~l~~~~~~ 111 (548)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.65 E-value=0.004 Score=47.70 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=51.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHH
Q 008925 34 TLVAALTRQKRFKSILSLISKVEKDGMKPD--SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT----TSTYNTLIK 107 (548)
Q Consensus 34 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~ 107 (548)
.+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|+.+|++..... |+ ......+..
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHH
Confidence 344555566677777777777666654433 2245555566666677777777776665531 22 222223344
Q ss_pred HHhccCChHHHHHHHHHh
Q 008925 108 GYGNVGKPEESLKLLQLM 125 (548)
Q Consensus 108 ~~~~~g~~~~A~~~~~~~ 125 (548)
++...|+.++|++.+-..
T Consensus 84 ~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 555666666666665544
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.64 E-value=0.0044 Score=47.48 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=22.6
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPN--VVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+|++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444333222 11333344444444444444444444443
No 191
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.63 E-value=0.049 Score=49.67 Aligned_cols=277 Identities=16% Similarity=0.099 Sum_probs=169.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCH
Q 008925 148 KNSIEEAWNVVYKMVASGIQPDAVTYNTLAR--AYAQYGETYRAEQMLFEMQNNQVRPNERTC----GIIVSGYCKEGNM 221 (548)
Q Consensus 148 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~ 221 (548)
.|+-..|.+.-.+..+. +..|......|+. .-.-.|+++.|.+-|+.|.. |+.+- ..|.-..-+.|+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 45666666555544322 2234443333433 23346777777777777765 22222 2222223456777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcC-CCCCHH--HHHHHHHHH---HhCCChhHHH
Q 008925 222 EDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFG-VKPDVV--TFSTIMDAW---SSAGLMGKCQ 295 (548)
Q Consensus 222 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~---~~~~~~~~a~ 295 (548)
+.|..+-++.-..- +--...+...+...+..|+++.|+++++.-.... +.++.. .-..|+.+- .-..+...|.
T Consensus 171 eaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 77777777665532 2334677777777788888888888777544332 223321 111222211 1223566777
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH--
Q 008925 296 EIFDDMVKAGIEPDIH-VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMC-- 372 (548)
Q Consensus 296 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 372 (548)
..-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+...+|++. . +....+.|+ .++.-++++.
T Consensus 250 ~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCC--cHHHHHHHHHHH
Confidence 777777665 55543 33444578889999999999999998876555542 2 222344454 3444344433
Q ss_pred -HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 008925 373 -EIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAI-GLAREAKRVLKSAE 442 (548)
Q Consensus 373 -~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 442 (548)
... +.+..+...+..+-...|++..|..--+...+ ..|....|..+.+.-... |+-.++..++-+..
T Consensus 322 ~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 322 ESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 222 44567777888888889999888887776665 478888888888887655 99999999998877
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0039 Score=54.93 Aligned_cols=101 Identities=10% Similarity=0.117 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHhCCCCCCHHHHH
Q 008925 273 PDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAG---EPQKAESILTSMRKYGVHPNVVMFT 349 (548)
Q Consensus 273 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~ 349 (548)
-|...|..|..+|...|+++.|..-|....+.. ++++..+..+..++.... .-.++..+|+++++.+ +-|+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 366777777777777888888877777777765 566667777766655433 2346777777777754 33555666
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcC
Q 008925 350 TVISGWCNAVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 350 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (548)
-|...+...|++.+|...|+.|++..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 66777777788888888888887764
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.57 E-value=0.00031 Score=47.62 Aligned_cols=55 Identities=11% Similarity=-0.026 Sum_probs=26.8
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 353 SGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
..+...|++++|++.|+++++.. |-+...+..++.++...|++++|...|+++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555443 33444455555555555555555555555543
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.48 E-value=0.00057 Score=46.80 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=32.4
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 008925 41 RQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS 93 (548)
Q Consensus 41 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (548)
+.|++++|+++|+++.... |.+...+..+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666666553 335556666666666666666666666666654
No 195
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.46 E-value=0.00094 Score=49.05 Aligned_cols=75 Identities=12% Similarity=0.342 Sum_probs=65.0
Q ss_pred ccccccCChhhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008925 2 NILVGKGKPHEAHYIFNCLIEEGH-RPTLITYTTLVAALTRQK--------RFKSILSLISKVEKDGMKPDSILFNAMIN 72 (548)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 72 (548)
..+...+++..-..+|+.+.+.|+ -|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.++.
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~ 112 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLG 112 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 345677999999999999999998 899999999999988643 34578999999999999999999999998
Q ss_pred HHHh
Q 008925 73 ACSE 76 (548)
Q Consensus 73 ~~~~ 76 (548)
.+.+
T Consensus 113 ~Llk 116 (120)
T PF08579_consen 113 SLLK 116 (120)
T ss_pred HHHH
Confidence 7754
No 196
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.44 E-value=0.00018 Score=40.11 Aligned_cols=26 Identities=27% Similarity=0.801 Sum_probs=10.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 348 FTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
|+.++.+|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.42 E-value=0.0041 Score=55.40 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=51.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-CHHHHHHH
Q 008925 348 FTTVISGWCNAVKMQRAMSIYEKMCEIGINPN----LKTYETLLWGYGEAKQPWRAEELLQVMEEK-GVRP-KKSTIQLV 421 (548)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l 421 (548)
|......+.+.|++++|+..|+.+++.. |+ ...+..++.+|...|++++|...|+.+.+. .-.| ....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333344466666666666666542 22 234555666666666666666666666542 1111 13345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 422 ADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
+.++...|+.++|.+.+++..+..|
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5666666666666666666655544
No 198
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.41 E-value=0.00019 Score=40.06 Aligned_cols=28 Identities=25% Similarity=0.692 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 008925 66 LFNAMINACSESGNVDEAMKIFQKMKDS 93 (548)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (548)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444455555444444443
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.36 E-value=0.025 Score=48.63 Aligned_cols=173 Identities=14% Similarity=0.128 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGM--KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTT--STYNTL 105 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l 105 (548)
..+-..+..+...|++.+|.+.|+.+...-. +--....-.++.++.+.|+++.|...+++.++.- |+. ..+...
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y 83 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHH
Confidence 3344455556666777777777777665421 1112344555666667777777777777766541 211 111111
Q ss_pred HHHHh--c-----------cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 008925 106 IKGYG--N-----------VGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVT 172 (548)
Q Consensus 106 ~~~~~--~-----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 172 (548)
+.+.+ . .+...+|...|+.+... |-.+.-..+|...+..+.+. =...
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~~~----la~~ 143 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELRNR----LAEH 143 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHHHH----HHHH
Confidence 11111 1 11223444444444432 22233334444443333221 0111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 008925 173 YNTLARAYAQYGETYRAEQMLFEMQNNQVRP--NERTCGIIVSGYCKEGNMEDA 224 (548)
Q Consensus 173 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 224 (548)
-..+++.|.+.|.+..|..-++.+++.-+.. .......++.+|.+.|..+.+
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 1224566667777777777666666552211 123445566666666666643
No 200
>PRK15331 chaperone protein SicA; Provisional
Probab=97.36 E-value=0.016 Score=46.47 Aligned_cols=87 Identities=11% Similarity=0.076 Sum_probs=42.9
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 320 YVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRA 399 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 399 (548)
+...|++++|..+|.-+.-.++ -+..-|..|..++-..+++++|+..|..+...+ ..|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 3345555555555555544331 233344455555555555555555555554433 23333344445555555555555
Q ss_pred HHHHHHHHH
Q 008925 400 EELLQVMEE 408 (548)
Q Consensus 400 ~~~~~~~~~ 408 (548)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 555555544
No 201
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.34 E-value=0.026 Score=48.58 Aligned_cols=173 Identities=16% Similarity=0.153 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCH-HHHHHHHH
Q 008925 67 FNAMINACSESGNVDEAMKIFQKMKDSGC--KPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPND-RTYNILVR 143 (548)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~ 143 (548)
+-.....+...|++.+|.+.|+.+...-. +-.....-.++.++.+.|++++|...++++.+..+-.|.. ..+-.++.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33444556677777777777777765411 1123445556667777777777777777766643222222 11111111
Q ss_pred HHHh-----------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008925 144 AWCS-----------KNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIV 212 (548)
Q Consensus 144 ~~~~-----------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 212 (548)
++.. .+...+|...|+.+++ -|-...-..+|...+..+.+. =...-..+.
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~---------------~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIK---------------RYPNSEYAEEAKKRLAELRNR----LAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHH---------------H-TTSTTHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHH---------------HCcCchHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 1111 1112233333433333 333333334444444333221 011112245
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhhH
Q 008925 213 SGYCKEGNMEDAMRFLYRMKELEVHPN---LVVFNSLIKGFLDIKDSDGV 259 (548)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 259 (548)
..|.+.|.+..|..-++.+++.- |.+ ......++.+|.+.|..+.+
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-p~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-PDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhCChHHH
Confidence 66777777777777777776642 211 23556666777777766643
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.012 Score=50.36 Aligned_cols=150 Identities=13% Similarity=0.031 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 008925 44 RFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQ 123 (548)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 123 (548)
..+..++++++-. ..+.+.++.++.-.|.+.-...++.+.++...+.++.....|++.-.+.|+.+.|...|+
T Consensus 164 ~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 164 AEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred chhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3366666666533 234556677777777888888888888776556677777778888888888888888888
Q ss_pred HhhhCCC----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 124 LMSQDKN----VKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNN 199 (548)
Q Consensus 124 ~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 199 (548)
+..+..+ ..-+..........+.-.+++..|...+.+.+... +.|+..-|.-.-+..-.|+..+|.+.++.+...
T Consensus 237 ~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 237 DVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6654332 22222233333445666778888888888877764 345555555555555577888888888888776
Q ss_pred CC
Q 008925 200 QV 201 (548)
Q Consensus 200 ~~ 201 (548)
.+
T Consensus 316 ~P 317 (366)
T KOG2796|consen 316 DP 317 (366)
T ss_pred CC
Confidence 43
No 203
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.33 E-value=0.14 Score=47.78 Aligned_cols=412 Identities=12% Similarity=0.087 Sum_probs=224.8
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH
Q 008925 21 IEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTS 100 (548)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 100 (548)
++.++ .|..+|..|+.-+..++..++..+++++|..- ++--..+|...+++-...+++.....+|.+.+... .+..
T Consensus 35 IkdNP-tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ld 110 (660)
T COG5107 35 IKDNP-TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLD 110 (660)
T ss_pred hhcCc-hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHh
Confidence 33443 48899999999999999999999999999764 45556688888888888899999999999988763 3566
Q ss_pred HHHHHHHHHhccC-----Ch-HHHHHHHHHhhhCCCCCCC-HHHHHHHHH---HHHhCC------CHHHHHHHHHHHHHC
Q 008925 101 TYNTLIKGYGNVG-----KP-EESLKLLQLMSQDKNVKPN-DRTYNILVR---AWCSKN------SIEEAWNVVYKMVAS 164 (548)
Q Consensus 101 ~~~~l~~~~~~~g-----~~-~~A~~~~~~~~~~~~~~~~-~~~~~~l~~---~~~~~g------~~~~a~~~~~~~~~~ 164 (548)
.|...+.--.+.+ +- -.-.+.|+-...-.++.|- ...|+..+. ..-..| +++...+.+.+++..
T Consensus 111 LW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t 190 (660)
T COG5107 111 LWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT 190 (660)
T ss_pred HHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC
Confidence 6666655433332 11 1112333333332233332 233443333 222233 345556666666654
Q ss_pred CCCCCHHHHH------HHHHHHHh-------cCCHHHHHHHHHHHHhC--CCC----CCHHHHHH-----------HHHH
Q 008925 165 GIQPDAVTYN------TLARAYAQ-------YGETYRAEQMLFEMQNN--QVR----PNERTCGI-----------IVSG 214 (548)
Q Consensus 165 ~~~~~~~~~~------~l~~~~~~-------~g~~~~a~~~~~~~~~~--~~~----~~~~~~~~-----------l~~~ 214 (548)
.+..=...|+ .=+..... .--+..|.+.++++... |.. .+..+++. .|..
T Consensus 191 P~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkw 270 (660)
T COG5107 191 PMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKW 270 (660)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhH
Confidence 2111111111 11111100 11234566666655421 211 11122221 2211
Q ss_pred HHh-----cCCH-H-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHH-HHHHHH
Q 008925 215 YCK-----EGNM-E-DAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFST-IMDAWS 286 (548)
Q Consensus 215 ~~~-----~g~~-~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 286 (548)
-.. .|++ . ..--++++.... +.-.+..|----.-+...++-..|.+......... |+ ++. +...|.
T Consensus 271 E~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~s--ps---L~~~lse~ye 344 (660)
T COG5107 271 EMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMS--PS---LTMFLSEYYE 344 (660)
T ss_pred hhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCC--Cc---hheeHHHHHh
Confidence 111 1111 1 111223333321 23334445444444555566666666655444332 22 111 111122
Q ss_pred hCCChhHHHHHHHHHHH--------------cCC---------------CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 008925 287 SAGLMGKCQEIFDDMVK--------------AGI---------------EPDIHVFSILAKGYVRAGEPQKAESILTSMR 337 (548)
Q Consensus 287 ~~~~~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (548)
-..+.+.....|+.... .+. ..-..+|..++..-.+....+.|..+|-++.
T Consensus 345 l~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred hcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 22222222222221110 000 1123355666776677777889999999998
Q ss_pred hCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--
Q 008925 338 KYG-VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-- 414 (548)
Q Consensus 338 ~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-- 414 (548)
+.+ +.+++..+++++.-++. |+...|-.+|+--+.. ++.+.......+.-+.+-++-+.|..+|+..++. +..+
T Consensus 425 k~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~ 501 (660)
T COG5107 425 KEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQL 501 (660)
T ss_pred ccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhh
Confidence 887 56677788888887664 7888899999876654 2333333445566677888888899999876643 2333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008925 415 KSTIQLVADSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
..+|..+++--..-|+...|..+-+++.+..
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 4578888888888898888877777765543
No 204
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.32 E-value=0.13 Score=47.35 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=12.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHH
Q 008925 32 YTTLVAALTRQKRFKSILSLIS 53 (548)
Q Consensus 32 ~~~l~~~~~~~g~~~~a~~~~~ 53 (548)
|..+.......|+.+-|..+++
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~ 24 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLE 24 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHH
Confidence 4445555555566666665554
No 205
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.30 E-value=0.013 Score=47.53 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=53.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME-----EKGVRPKKSTIQL 420 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~ 420 (548)
+...++..+...|++++|..+.++++... |-+...|..++.+|...|+..+|.+.|+++. +.|+.|+..+-..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 45556677778899999999999999876 6778889999999999999999999998874 4688888776543
No 206
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.28 E-value=0.0091 Score=49.96 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 362 QRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
+-|++++++|...|+-||..++..|+..+++
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 3344444444444444444444444444433
No 207
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.27 E-value=0.0093 Score=49.92 Aligned_cols=88 Identities=16% Similarity=0.349 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChHHHH
Q 008925 26 RPTLITYTTLVAALTR-----QKRFKSILSLISKVEKDGMKPDSILFNAMINACSES----------------GNVDEAM 84 (548)
Q Consensus 26 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~A~ 84 (548)
..+-.+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3467778888887764 466777777888888888888888888888876542 1234566
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 008925 85 KIFQKMKDSGCKPTTSTYNTLIKGYGNVG 113 (548)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (548)
+++++|...|+-||..++..++..+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 66666666666666666666666665544
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.25 E-value=0.058 Score=50.14 Aligned_cols=181 Identities=15% Similarity=0.131 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 008925 242 VFNSLIKGFLDIKDSDGVDKALTLMEEFG---VKPDVVTFSTIMDAWSS---AGLMGKCQEIFDDMVKAGIEPDIHVFSI 315 (548)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (548)
+...++-+|....+++..+++.+.+.... +......-...+.++.+ .|+.++|+.++..++...-.+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33455556777777777777777776641 11112222233444555 6777777777777554444666666666
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008925 316 LAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQ 395 (548)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (548)
++..|-.. |. +.+.. |. ...++|+..|.+.-+. .|+..+=..++..+...|.
T Consensus 223 ~GRIyKD~---------~~---~s~~~-d~-------------~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 223 LGRIYKDL---------FL---ESNFT-DR-------------ESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHH---------HH---HcCcc-ch-------------HHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCC
Confidence 66554221 00 00000 11 1145555555555543 2333322222222222222
Q ss_pred hH----HHHHHH---HH-HHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008925 396 PW----RAEELL---QV-MEEKGV---RPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPN 450 (548)
Q Consensus 396 ~~----~A~~~~---~~-~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 450 (548)
.. +..++- .. ..+.|. ..+.-.+..++.+..-.|+.++|.+..+++....+..|-
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 11 111111 11 112222 233445556777888888888888888888877766664
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=97.23 E-value=0.013 Score=46.88 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=76.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008925 351 VISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGL 430 (548)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 430 (548)
...-+-..|++++|..+|+-+.-.+ +-+..-|..|..++-..+++++|+..|......+ .-|+......+.++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 3444567899999999999998876 5678888999999999999999999999887543 2344456668899999999
Q ss_pred HHHHHHHHHHHHh
Q 008925 431 AREAKRVLKSAEE 443 (548)
Q Consensus 431 ~~~A~~~~~~~~~ 443 (548)
.+.|+..|+.+.+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999876
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.13 E-value=0.0033 Score=43.65 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=23.6
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 355 WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
|.+.+++++|.++++.++..+ |.+...+...+.++...|++++|...|++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444432 33334444444444444444444444444443
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.12 E-value=0.019 Score=51.18 Aligned_cols=94 Identities=9% Similarity=-0.086 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHcC--CCCCHHHHHHH
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRKYGVHPNV----VMFTTVISGWCNAVKMQRAMSIYEKMCEIG--INPNLKTYETL 386 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l 386 (548)
|......+.+.|++++|...|+.+.+. .|+. ..+..++..|...|++++|...|+.+++.. -+.....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334445566666666555553 2322 244455555555666666666666665431 01123334444
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 008925 387 LWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
+..+...|++++|..+|++.++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555566666666666666554
No 212
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.10 E-value=0.021 Score=51.38 Aligned_cols=166 Identities=11% Similarity=0.053 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC---C--CCHH
Q 008925 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEF-GVKP---DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI---E--PDIH 311 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~ 311 (548)
..|..+..++.+..++.+++.+-+.-... |..| .......+..++...+.++++++.|+.+.+... . ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34555555555555555565555443332 1111 112334466777788889999999988875311 1 1245
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHh----CCCCCCH------HHHHHHHHHHhccCChHHHHHHHHHHHH----cCCC
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRK----YGVHPNV------VMFTTVISGWCNAVKMQRAMSIYEKMCE----IGIN 377 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~ 377 (548)
++..|...|.+..|+++|.-+..++.+ .++. |. .+.-.|..++...|+.-+|.+.-+++.+ .|-.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 788899999999999999877766643 2221 21 1233455667788888888888877664 3422
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 378 PN-LKTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 378 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
+- ......+.+.|...|+.+.|..-|+++.
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 21 2345678889999999999888887764
No 213
>PRK11906 transcriptional regulator; Provisional
Probab=97.07 E-value=0.04 Score=52.02 Aligned_cols=145 Identities=10% Similarity=0.017 Sum_probs=101.7
Q ss_pred ChhHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHc---------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 008925 290 LMGKCQEIFDDMV---KAGIEPDIHVFSILAKGYVRA---------GEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN 357 (548)
Q Consensus 290 ~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 357 (548)
..+.|..+|.+++ ..+ |.....|..+..++... .+..+|.+..+...+.+ +-|......++.+...
T Consensus 273 ~~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 3567888888888 332 22345666555544322 23456777888888875 4477788888887788
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHH
Q 008925 358 AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK---STIQLVADSWRAIGLAREA 434 (548)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A 434 (548)
.++.+.|...|+++...+ |....+|......+...|+.++|.+.+++..+. .|.. .+....++.|+.. .+++|
T Consensus 351 ~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred hcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhh
Confidence 888999999999999875 555677888888888899999999999997763 4543 2444444555544 47888
Q ss_pred HHHHHH
Q 008925 435 KRVLKS 440 (548)
Q Consensus 435 ~~~~~~ 440 (548)
++++-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 888755
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.05 E-value=0.0015 Score=46.19 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEEK--GVR---PK-KSTIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
.++..+...|...|++++|+..|++.++. ... |+ ..++..++.++...|++++|+++++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777766532 011 22 33566777778888888888888877654
No 215
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.05 E-value=0.28 Score=45.97 Aligned_cols=376 Identities=14% Similarity=0.174 Sum_probs=202.9
Q ss_pred HHHHHHH--HHccCCHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--
Q 008925 32 YTTLVAA--LTRQKRFKSILSLISKVEKD--GMKP------------DSILFNAMINACSESGNVDEAMKIFQKMKDS-- 93 (548)
Q Consensus 32 ~~~l~~~--~~~~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 93 (548)
|..+..+ +.+.+.+.+|++.+..-... +..+ |-..=+..+..+...|++.+++.+++++...
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 4444443 45789999999999887654 2221 1122245567788999999999999998765
Q ss_pred --CCCCCHHHHHHHHHHHhccCC---------------hHHHHHHHHHhhhCC-----CCCCCHHHHHHHHHHHHhC--C
Q 008925 94 --GCKPTTSTYNTLIKGYGNVGK---------------PEESLKLLQLMSQDK-----NVKPNDRTYNILVRAWCSK--N 149 (548)
Q Consensus 94 --~~~~~~~~~~~l~~~~~~~g~---------------~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~--g 149 (548)
...-+..+|+.++-.+.++=- ++.+.-...++.... .+.|.......++....-. .
T Consensus 160 krE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e 239 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKE 239 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHh
Confidence 333688899987776654310 111111111111100 0111111111111111110 0
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHH
Q 008925 150 SIEEAWNVVYKMVASGIQPDA-VTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP----NERTCGIIVSGYCKEGNMEDA 224 (548)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A 224 (548)
+..--.++++.-...-+.|+. .....|...+.. +.+++..+-+.+....+.+ =..++..++....+.++...|
T Consensus 240 ~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a 317 (549)
T PF07079_consen 240 RLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEA 317 (549)
T ss_pred hccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 111111122222122223332 222333333333 6666766666665442211 135677778888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHH-------HHHHHHH-cCCChhhH---HHHHHHHHHcCCCCCHHHHHHHH---HHHHhCCC
Q 008925 225 MRFLYRMKELEVHPNLVVFN-------SLIKGFL-DIKDSDGV---DKALTLMEEFGVKPDVVTFSTIM---DAWSSAGL 290 (548)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~-------~l~~~~~-~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~ 290 (548)
.+.+.-+...+ |+...-. .+....+ ...++... ..+|+.....++. .......++ .-+.+.|.
T Consensus 318 ~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~ 394 (549)
T PF07079_consen 318 KQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQ 394 (549)
T ss_pred HHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCC
Confidence 99998877653 4433211 1222222 11222222 3334444443322 112222222 33455565
Q ss_pred -hhHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHH---cCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHH--Hh
Q 008925 291 -MGKCQEIFDDMVKAGIEPDIHVFSILA----KGYVR---AGEPQKAESILTSMRKYGVHPNV----VMFTTVISG--WC 356 (548)
Q Consensus 291 -~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~--~~ 356 (548)
-++|+.+++.+++.. +-|...-+... ..|.. ...+..-+.+-+-+.+.|++|-. ..-|.|.++ +-
T Consensus 395 ~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 395 CDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred ccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 889999999998764 34444333322 22322 22344444555555667776643 234444433 45
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008925 357 NAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQL 420 (548)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 420 (548)
.+|++.++.-+-.-..+ +.|++.+|..++-++....++++|..+++.+ +|+..++..
T Consensus 474 sqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred hcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 68999998876555555 5789999999999999999999999999764 677766654
No 216
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.04 E-value=0.022 Score=51.19 Aligned_cols=168 Identities=14% Similarity=0.056 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-----CCCHH
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKA-GIEP---DIHVFSILAKGYVRAGEPQKAESILTSMRKYGV-----HPNVV 346 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~ 346 (548)
..|..+.+++.+..++.+++.+-..-... |..| --.....+..++...+.++++++.|+.+.+... -....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34556666666666777777666554432 1111 123445577788888899999999998876311 11234
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCC
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEI----GINPNLK-----TYETLLWGYGEAKQPWRAEELLQVME----EKGVRP 413 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p 413 (548)
++..|...|.+..++++|.-+..++.+. ++..=.. ....+..++...|..-.|.+..++.. +.|-.|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 7888999999999999999988887753 2211111 23455677888898888998888765 455444
Q ss_pred CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 414 KKS-TIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 414 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
... .+..+++.|...|+.+.|..-++++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 433 667889999999999999998888763
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.02 E-value=0.003 Score=43.89 Aligned_cols=59 Identities=20% Similarity=-0.018 Sum_probs=50.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 387 LWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
...|.+.+++++|.+++++++..+ +.+...+...+.++...|++++|.+.++++.+..|
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 457889999999999999999853 23455888899999999999999999999986665
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.25 Score=42.77 Aligned_cols=138 Identities=10% Similarity=0.068 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH-----HHHHH
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVV-----MFTTV 351 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~l 351 (548)
..+.++..+.-.+.+.-....+.+.++.+.+.++.....|++.-.+.||.+.|..+|+...+..-..|.. .....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666677777777888888877656677777888888888888888888888666532222222 22333
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008925 352 ISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKST 417 (548)
Q Consensus 352 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 417 (548)
...|.-.+++..|...+.+....+ +.|+...+.-.-+..-.|+...|++.++.|++. .|.+.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 344556677888888888887765 556666666555666678888888888888764 454443
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.86 E-value=0.003 Score=44.62 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEI--GIN---PN-LKTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
+++.+...|...|++++|+..|+++++. ... |+ ..++..++.+|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555666665555555532 011 11 2345555666666666666666666554
No 220
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.82 E-value=0.16 Score=48.24 Aligned_cols=100 Identities=15% Similarity=0.116 Sum_probs=58.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIGINP--NLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSW 425 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~ 425 (548)
..+..++.+.|+.++|++.|+++.+.. ++ +......|+.++...+.+.++..++.+-.+...+.+.. .|...+-..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 445556667777777777777776542 22 23355667777777777777777777654432222222 233222122
Q ss_pred HHcCC---------------HHHHHHHHHHHHhccCCCC
Q 008925 426 RAIGL---------------AREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 426 ~~~g~---------------~~~A~~~~~~~~~~~~~~~ 449 (548)
...|+ -..|.+.+.++.+-+|.+|
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 22222 2346788889888888877
No 221
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.80 E-value=0.58 Score=45.68 Aligned_cols=375 Identities=10% Similarity=0.026 Sum_probs=203.3
Q ss_pred hhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHH
Q 008925 11 HEAHYIFNCLIEEGHRPTLI-TYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACS-ESGNVDEAMKIFQ 88 (548)
Q Consensus 11 ~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~ 88 (548)
+.+..+++.++.. .|... -|......=.+.|..+.+.++|++.... ++.+...|......+. ..|+.+.....|+
T Consensus 62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4455566666643 35553 4566666666788888899999888764 6777777777766554 5678888888888
Q ss_pred HHHhc-CCC-CCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh-----CCCHHHHHHHHHHH
Q 008925 89 KMKDS-GCK-PTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCS-----KNSIEEAWNVVYKM 161 (548)
Q Consensus 89 ~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~ 161 (548)
.+... |.. .+...|...|..-...+++.....+|+++...+...- ...|.......-. ....+++.++-...
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~-~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~ 217 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQL-NRHFDRFKQLLNQNEEKILLSIDELIQLRSDV 217 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHh-HHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence 88764 211 2445778888877788888888888888876310000 1111111111111 12233333332222
Q ss_pred HH--------------------CCCCCCH--HHHHHHHHH-------HHhcCCHHHHHHHHHHHHhCC---CC----CCH
Q 008925 162 VA--------------------SGIQPDA--VTYNTLARA-------YAQYGETYRAEQMLFEMQNNQ---VR----PNE 205 (548)
Q Consensus 162 ~~--------------------~~~~~~~--~~~~~l~~~-------~~~~g~~~~a~~~~~~~~~~~---~~----~~~ 205 (548)
.. .+-+.+. ...+.+... +...-...+....++.-.+.. ++ ++.
T Consensus 218 ~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql 297 (577)
T KOG1258|consen 218 AERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL 297 (577)
T ss_pred HhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH
Confidence 21 0000010 111111111 111111222222233222221 11 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 206 RTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAW 285 (548)
Q Consensus 206 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (548)
.+|..-+.--...|+.+.+.-+|++..-- ...-...|-..+.-....|+.+-+..++....+...+..+.+-..-....
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 55666666677888888888888887531 11122344444444445588888877777666654443333322223334
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH---HHHHHHhCCCCCCHHHHHHHHHH-----Hhc
Q 008925 286 SSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAES---ILTSMRKYGVHPNVVMFTTVISG-----WCN 357 (548)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~p~~~~~~~l~~~-----~~~ 357 (548)
-..|++..|..+++.+...- +.-..+-..-+....+.|+.+.+.. ++........ +......+..- +.-
T Consensus 377 e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHH
Confidence 56678899999888888763 2223333344555667777777763 3333322111 11122222211 223
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008925 358 AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK 394 (548)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (548)
.++.+.|..++.++.+.- +++...|..+++.+...+
T Consensus 454 ~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 577888888888888863 777777877777766554
No 222
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.096 Score=46.23 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=107.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 008925 35 LVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGK 114 (548)
Q Consensus 35 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 114 (548)
-.......|++..|..+|....... +-+...-..+..+|...|+++.|..++..+...--.........-+..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3455678899999999999998764 334566777889999999999999999998654211112222234555666666
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008925 115 PEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGI-QPDAVTYNTLARAYAQYGETYRAEQML 193 (548)
Q Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 193 (548)
..+...+-.+.-.. +.|...-..+...+...|+.+.|.+.+-.+++.+. ..|...-..|+..+...|.-+.+...+
T Consensus 219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 66666666666543 45778888889999999999999998888776521 235666777888887777444333333
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.76 E-value=0.48 Score=44.24 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---CCChhhHHHHHHHHHHcCCCCCHHHH
Q 008925 205 ERTCGIIVSGYCKEGNMEDAMRFLYRMKELE---VHPNLVVFNSLIKGFLD---IKDSDGVDKALTLMEEFGVKPDVVTF 278 (548)
Q Consensus 205 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 278 (548)
..+...++-.|....+++..+++++.+.... +......-...+-++.+ .|+.++|..++..+......+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344456667889999999999999998742 11223333344556666 79999999999986666667788888
Q ss_pred HHHHHHHH
Q 008925 279 STIMDAWS 286 (548)
Q Consensus 279 ~~l~~~~~ 286 (548)
..++..|-
T Consensus 221 gL~GRIyK 228 (374)
T PF13281_consen 221 GLLGRIYK 228 (374)
T ss_pred HHHHHHHH
Confidence 88887764
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.75 E-value=0.02 Score=46.27 Aligned_cols=71 Identities=18% Similarity=0.400 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh----CCCCCCCHHH
Q 008925 66 LFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQ----DKNVKPNDRT 137 (548)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~ 137 (548)
....++..+...|++++|..+.+.+.... +-+...|..+|.+|...|+..+|++.|+++.+ .-|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445555666666666666666666542 33555666666666666666666666655532 2245555543
No 225
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.74 Score=46.13 Aligned_cols=109 Identities=9% Similarity=0.107 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
.+--+.-+...|+-.+|.++-.+.+ -||-..|---+.+++..+++++-+++-+... .+.-|.-.+.+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 3344445556677777777766665 3666666666777777777766444333221 24556667777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 393 AKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
.|+.++|.+++-+... .. ..+.+|.+.|++.+|.+..-+
T Consensus 757 ~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 7777777777765422 11 355667777777777766544
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.74 E-value=0.12 Score=50.34 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH-------
Q 008925 274 DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVV------- 346 (548)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------- 346 (548)
+..++..+..-+.+...+..|-++|..+-.. ..+++.....++|++|..+-+...+. .||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 3445555555556667777788888776432 24566777888888888888777653 34432
Q ss_pred ----HHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 347 ----MFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 347 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
-|...-.+|.+.|+..+|.++++++..
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122233466777778888888777664
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.019 Score=52.77 Aligned_cols=91 Identities=21% Similarity=0.129 Sum_probs=57.5
Q ss_pred ccccccCChhhHHHHHHHHHHC-----CCC---------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008925 2 NILVGKGKPHEAHYIFNCLIEE-----GHR---------PTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILF 67 (548)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 67 (548)
+.+.+.|++..|...|+.++.. +.. .-..+++.|..++.+.+++..|++..++.+..+ ++|+..+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3577888888888888887652 111 112245556666666666666666666666654 4455555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc
Q 008925 68 NAMINACSESGNVDEAMKIFQKMKDS 93 (548)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (548)
..-..+|...|+++.|+..|+++++.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 55666666666666666666666664
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.041 Score=50.61 Aligned_cols=138 Identities=10% Similarity=0.039 Sum_probs=72.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 008925 282 MDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKM 361 (548)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 361 (548)
...+.+.|++..|...|++++..= . |...-+.++.... .. .-..+++.+..++.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l--~-----------~~~~~~~ee~~~~-~~-------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFL--E-----------YRRSFDEEEQKKA-EA-------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHh--h-----------ccccCCHHHHHHH-HH-------HHHHHhhHHHHHHHhhhhH
Confidence 445778888888888888776420 0 0000111111111 00 1223455556666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHH-HHHHHHH
Q 008925 362 QRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAR-EAKRVLK 439 (548)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~-~A~~~~~ 439 (548)
.+|+..-++.++.+ ++|...+---..+|...|+++.|+..|+++++. .|+.. +-..+..+-.+..... ...++|.
T Consensus 274 ~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 274 KEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655 556666555666666666666666666666653 44433 3333333333333332 2355666
Q ss_pred HHHh
Q 008925 440 SAEE 443 (548)
Q Consensus 440 ~~~~ 443 (548)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 6653
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.31 Score=43.12 Aligned_cols=153 Identities=12% Similarity=0.094 Sum_probs=94.1
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 008925 284 AWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQR 363 (548)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 363 (548)
.....|++..|..+|+...... +.+......++.+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4556788888888888887764 444566777888888888888888888877543111111121222334444444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGV-RPKKSTIQLVADSWRAIGLAREAKRVLK 439 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 439 (548)
...+-.+.-. + +.|...-..+...+...|+.+.|.+.+-.+++.+. .-|...-..++..+...|.-+.+...++
T Consensus 222 ~~~l~~~~aa-d-Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 222 IQDLQRRLAA-D-PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4444344433 1 44677777788888888888888887777764432 2344466667777766665444444444
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.026 Score=49.21 Aligned_cols=101 Identities=11% Similarity=0.049 Sum_probs=71.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCC-HHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN---LKTYETLLWGYGEAKQPWRAEELLQVMEE-KGVRPK-KSTIQLV 421 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~-~~~~~~l 421 (548)
.|+.-+..+ +.|++..|...|...++.. |.+ ...+-.|+.++...|++++|...|..+.+ .+-.|. ++.+..+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 455555443 4577888888888888753 222 23455678888888888888888888774 333344 3577788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 422 ADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
+.+..+.|+.++|...|++..+.+|..+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 8888888888888888888887776543
No 231
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.61 E-value=0.45 Score=41.91 Aligned_cols=202 Identities=13% Similarity=0.048 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 008925 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEF-GVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAK- 318 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 318 (548)
.........+...+++..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444444445555544444444331 112233344444444555555555666555555432111 111222222
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 008925 319 GYVRAGEPQKAESILTSMRKYGV--HPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINP-NLKTYETLLWGYGEAKQ 395 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 395 (548)
.+...|+++.|...+.+...... ......+......+...++.+.+...+.++.... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 55566666666666666644211 0122233333333555666777777777666643 23 35566666666666667
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 396 PWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 396 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
+++|...+...... .|+ ...+......+...|..+++...+.+..+..+
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 77777777666653 233 33444444444455667777777766654443
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.39 Score=41.13 Aligned_cols=206 Identities=13% Similarity=0.167 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGY 109 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (548)
..|.....+|...++|++|...+.+..+. ...+...|+. ...++.|.-+.+++.+. +.-+..|+-....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34566666677777888887777766532 1223222222 12234455555555442 11233455555667
Q ss_pred hccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCC---HHHHHHHHHHHHhcC
Q 008925 110 GNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGI--QPD---AVTYNTLARAYAQYG 184 (548)
Q Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~---~~~~~~l~~~~~~~g 184 (548)
..+|.++.|-..+++.-+ ....-++++|+++|++....-. ..+ ...+....+.+.+..
T Consensus 102 ~E~GspdtAAmaleKAak-----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK-----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHhCCcchHHHHHHHHHH-----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 777777666666555432 1233445555555555432100 011 122333444555555
Q ss_pred CHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHcCCCh
Q 008925 185 ETYRAEQMLFEMQNN----QVRPN-ERTCGIIVSGYCKEGNMEDAMRFLYRMKELE---VHPNLVVFNSLIKGFLDIKDS 256 (548)
Q Consensus 185 ~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 256 (548)
.+.+|-..+.+-... .--++ -..+...|-.+.-..++..|..+++...+.+ .+.+..+...|+.+|- .|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCH
Confidence 665554444332110 00111 1223344445555667777777776643322 1233455666665553 3555
Q ss_pred hhHHHHH
Q 008925 257 DGVDKAL 263 (548)
Q Consensus 257 ~~a~~~~ 263 (548)
+++.+++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 5544443
No 233
>PRK11906 transcriptional regulator; Provisional
Probab=96.60 E-value=0.096 Score=49.60 Aligned_cols=120 Identities=10% Similarity=0.022 Sum_probs=92.5
Q ss_pred CHhHHHHHHHHHHh-CCCCCCH-HHHHHHHHHHh---------ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008925 325 EPQKAESILTSMRK-YGVHPNV-VMFTTVISGWC---------NAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA 393 (548)
Q Consensus 325 ~~~~A~~~~~~~~~-~~~~p~~-~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (548)
..+.|+.+|.+... ....|+- ..|..+..++. ...+..+|.++-+++++.+ +.|+.....++.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 35678889999882 1234553 34444433322 2345678899999999988 78999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 394 KQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 394 g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
++++.|...|++.... .|+.. ++...+..+.-.|+.++|.+.++++.+.+|.
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 9999999999999884 67765 7888888899999999999999998876653
No 234
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.57 E-value=0.85 Score=44.60 Aligned_cols=135 Identities=11% Similarity=0.123 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
+...|..++.--....+.+.+..++..++.. .|.----|......=.+.|..+.+.++|++.++. ++.+...|.....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 3345666665555555667777788887765 3333446777777778899999999999999875 6667777777665
Q ss_pred HHh-ccCChHHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008925 108 GYG-NVGKPEESLKLLQLMSQDKNV-KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS 164 (548)
Q Consensus 108 ~~~-~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 164 (548)
.+. ..|+.+...+.|+......|. -.+...|...+..-..++++.....++++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 554 457888888888888765432 234567888888888889999999999999874
No 235
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.54 E-value=0.74 Score=43.55 Aligned_cols=120 Identities=9% Similarity=0.027 Sum_probs=75.2
Q ss_pred ccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 6 GKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMK 85 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 85 (548)
..|+...|-+-...+++..+ .++.............|+++.+.+.+...... +.....+...++....+.|+++.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~-~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQ-QDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCC-CCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 45666665444444444322 23333333445566778899888888776554 34455677788888888889999988
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhC
Q 008925 86 IFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD 128 (548)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 128 (548)
+-+-|+...++ ++.........--..|-++++...++++...
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 88888776543 4444443333334456778888888877654
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.53 E-value=0.056 Score=51.02 Aligned_cols=66 Identities=9% Similarity=0.009 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 008925 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNV----VMFTTVISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 307 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 557789999999999999999999999999985 4664 35899999999999999999999999985
No 237
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.23 Score=42.46 Aligned_cols=166 Identities=16% Similarity=0.211 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCH--HHHHHHHHHHhccCChHHHH
Q 008925 44 RFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS--GCKPTT--STYNTLIKGYGNVGKPEESL 119 (548)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~--~~~~~l~~~~~~~g~~~~A~ 119 (548)
.++.|.-+.+++.+. +--+..++.....|..+|.++.|-..+++.-+. ++.|+. ..|..-+...-..++...|.
T Consensus 73 ayEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 73 AYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 345566666666542 223456777778888889888888877776432 233332 12332223333333333333
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008925 120 KLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS----GIQPD-AVTYNTLARAYAQYGETYRAEQMLF 194 (548)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 194 (548)
++ +....+.+.+...+++|-..+.+-... .--++ -..|...|-.+.-..++..|...++
T Consensus 151 el----------------~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 151 EL----------------YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HH----------------HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 33 334444566666666666555443211 00112 2335566667777889999999998
Q ss_pred HHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008925 195 EMQNNQ---VRPNERTCGIIVSGYCKEGNMEDAMRFL 228 (548)
Q Consensus 195 ~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 228 (548)
.--+.+ -..+..+...|+.+| ..|+.+++..++
T Consensus 215 ~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 215 DCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred chhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 754432 233567777888877 467887776654
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.51 E-value=0.016 Score=54.45 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 343 PNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL----KTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 343 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
.+...++.+..+|...|++++|+..|+++++.+ |+. .+|..+..+|...|+.++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999964 553 35999999999999999999999999985
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.49 E-value=0.32 Score=47.86 Aligned_cols=115 Identities=12% Similarity=0.096 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHH
Q 008925 150 SIEEAWNVVYKMVASGIQPDAVTYNT-LARAYAQYGETYRAEQMLFEMQNNQ---VRPNERTCGIIVSGYCKEGNMEDAM 225 (548)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 225 (548)
..+.|.++++.+.+. -|+...|.. -.+.+...|+.++|.+.|+...... .......+.-++.++.-..+|++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 455556666665554 344433332 2344555566666666665433211 1112334444555566666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCh-------hhHHHHHHHHH
Q 008925 226 RFLYRMKELEVHPNLVVFNSLIKG-FLDIKDS-------DGVDKALTLME 267 (548)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-------~~a~~~~~~~~ 267 (548)
..|..+.+.. .-+...|..+..+ +...++. ++|.+++.++.
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 6666666543 2223333333222 2344555 55666665543
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.47 E-value=0.19 Score=49.44 Aligned_cols=167 Identities=14% Similarity=0.104 Sum_probs=109.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH----HcCCHhHHHHHHHHHHhCCCCCCHHH
Q 008925 278 FSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDI------HVFSILAKGYV----RAGEPQKAESILTSMRKYGVHPNVVM 347 (548)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~ 347 (548)
+..++....-.|+-+.+++.+....+.+---.+ -.|...+..++ ...+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555566667777777777766543211111 12222232222 245677899999999885 577666
Q ss_pred HH-HHHHHHhccCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-
Q 008925 348 FT-TVISGWCNAVKMQRAMSIYEKMCEIG---INPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVA- 422 (548)
Q Consensus 348 ~~-~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~- 422 (548)
|. .-.+.+...|+.++|++.|+++.... .+.....+.-+...+.-.+++++|.+.|.++.+.. .-+..+|..+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 64 34566778899999999999876421 12234456778888999999999999999998743 33455665554
Q ss_pred HHHHHcCCH-------HHHHHHHHHHHhccCC
Q 008925 423 DSWRAIGLA-------REAKRVLKSAEEDRQS 447 (548)
Q Consensus 423 ~~~~~~g~~-------~~A~~~~~~~~~~~~~ 447 (548)
.++...|+. ++|.+++++++.....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 455677888 8999999998855443
No 241
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.45 E-value=0.36 Score=38.92 Aligned_cols=124 Identities=10% Similarity=0.102 Sum_probs=70.0
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHhccCCh
Q 008925 40 TRQKRFKSILSLISKVEKDGMKPDSI-LFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTS---TYNTLIKGYGNVGKP 115 (548)
Q Consensus 40 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 115 (548)
.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|... ....-.-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566777777777777665443222 22333445566777777777777765543223221 111122334566777
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008925 116 EESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS 164 (548)
Q Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 164 (548)
+......+.+... +.+-....-..|.-+-.+.|++.+|.++|..+...
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 7777666666433 23333445556666666777777777777776654
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.43 E-value=0.05 Score=47.48 Aligned_cols=96 Identities=14% Similarity=0.168 Sum_probs=64.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCHHHHHHH
Q 008925 31 TYTTLVAALTRQKRFKSILSLISKVEKDGMKPD---SILFNAMINACSESGNVDEAMKIFQKMKDSG--CKPTTSTYNTL 105 (548)
Q Consensus 31 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l 105 (548)
.|+.-+. +.+.|++..|...|...++.. |.+ ...+.-|..++...|+++.|..+|..+.+.- .+.-+..+.-|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4555444 445677888888888877653 211 2345557788888888888888888776641 11234666677
Q ss_pred HHHHhccCChHHHHHHHHHhhhC
Q 008925 106 IKGYGNVGKPEESLKLLQLMSQD 128 (548)
Q Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~ 128 (548)
..+..+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77777888888888888888775
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.43 E-value=0.054 Score=41.10 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=55.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHhcc
Q 008925 36 VAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTT---STYNTLIKGYGNV 112 (548)
Q Consensus 36 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 112 (548)
.-++...|+.+.|++.|.+.+.. .|.....||.-..++.-.|+.++|+.-+++.++..-..+. ..|.--...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34556667777777777776654 3445667777777777777777777777776654212222 2233344556666
Q ss_pred CChHHHHHHHHHhhh
Q 008925 113 GKPEESLKLLQLMSQ 127 (548)
Q Consensus 113 g~~~~A~~~~~~~~~ 127 (548)
|+.+.|..=|+...+
T Consensus 129 g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQ 143 (175)
T ss_pred CchHHHHHhHHHHHH
Confidence 777777766666654
No 244
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.38 E-value=0.77 Score=45.15 Aligned_cols=87 Identities=9% Similarity=0.132 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----------
Q 008925 242 VFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIH---------- 311 (548)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------- 311 (548)
+...+...+.+...+.-|.++|..+-.. ..+.+.....+++++|..+.+...+. .||..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 3333333444444455555555544331 23445555666666666666655443 22221
Q ss_pred -HHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 008925 312 -VFSILAKGYVRAGEPQKAESILTSMRKY 339 (548)
Q Consensus 312 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (548)
-+.-.-++|.+.|+-.+|..+++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1122234677778888888888887653
No 245
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.18 E-value=0.059 Score=44.95 Aligned_cols=195 Identities=14% Similarity=0.109 Sum_probs=98.9
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 008925 284 AWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQR 363 (548)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 363 (548)
.|-..|-+..|+-=|.+.+... |.-+.+||.|+--+...|+++.|.+.|+...+.+..-+-...|.-+. +---|+++-
T Consensus 74 lYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~L 151 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKL 151 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHh
Confidence 3556666666666666666553 33355777777777777777777777777776543222222332222 233467777
Q ss_pred HHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHH
Q 008925 364 AMSIYEKMCEIGINPNLK--TYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVA-DSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~ 440 (548)
|.+-|.+.-..+ +.|+. .|..+ --..-++.+|..-+.+--+ ..|.+-|...+ ..+ .|++.+ +.++++
T Consensus 152 Aq~d~~~fYQ~D-~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~y--LgkiS~-e~l~~~ 221 (297)
T COG4785 152 AQDDLLAFYQDD-PNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFY--LGKISE-ETLMER 221 (297)
T ss_pred hHHHHHHHHhcC-CCChHHHHHHHH---HHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHH--HhhccH-HHHHHH
Confidence 776666665543 22221 12111 1223345555543332211 12333333222 222 222221 122222
Q ss_pred HHhccCCCCCcchhHHHHHHHhhccccccccccccccccccccCCCChhhhhhhhhhccccccc
Q 008925 441 AEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAAKIRSQIVLRSDTVW 504 (548)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~g~~w 504 (548)
+.+... .....++.+ ..+|+-||..|.+.|+.++|..+.|.....+-+.+
T Consensus 222 ~~a~a~-----~n~~~Ae~L---------TEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynf 271 (297)
T COG4785 222 LKADAT-----DNTSLAEHL---------TETYFYLGKYYLSLGDLDEATALFKLAVANNVYNF 271 (297)
T ss_pred HHhhcc-----chHHHHHHH---------HHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHH
Confidence 211100 011111111 13578899999999999999999998877763333
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.18 E-value=0.13 Score=39.07 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=52.7
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCC
Q 008925 354 GWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS---TIQLVADSWRAIGL 430 (548)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~ 430 (548)
++...|+.+.|++.|.+.+..- |.+...|+.-..++.-.|+.++|++-+++.++..-.-+.. .+..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3455666666666666666542 4455666666666666666666666666665421111111 23333455666677
Q ss_pred HHHHHHHHHHHHhcc
Q 008925 431 AREAKRVLKSAEEDR 445 (548)
Q Consensus 431 ~~~A~~~~~~~~~~~ 445 (548)
-+.|..-|+.+.+..
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777665444
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=1.9 Score=44.09 Aligned_cols=172 Identities=10% Similarity=0.061 Sum_probs=91.4
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTL--ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV 80 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (548)
.+.+...+.-|+.+.+.- +..++. ......+.-+.+.|++++|...|-+.... +.|.. ++.-|....+.
T Consensus 343 iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLdaq~I 413 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLDAQRI 413 (933)
T ss_pred HHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcCHHHH
Confidence 455666677777765542 222222 12333344555778888888777665543 23322 34444555556
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYK 160 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (548)
.+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .+...-| ....+..+.+.+-.++|..+-.+
T Consensus 414 knLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHH
Confidence 6666777777777653 34445567778888877777666665543 1111112 33445555555666666554443
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008925 161 MVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEM 196 (548)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 196 (548)
... .......+ +-..+++++|++++..+
T Consensus 489 ~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 321 22222222 23445666666665544
No 248
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.15 E-value=0.086 Score=40.90 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 008925 96 KPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVR 143 (548)
Q Consensus 96 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (548)
.|+..+..+++.+|+..|++..|+++++...+..+++-+...|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344444444444444444444444444444444434434444444444
No 249
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.02 E-value=0.17 Score=39.22 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 008925 341 VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCE-IGINPNLKTYETLLWGYG 391 (548)
Q Consensus 341 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 391 (548)
..|+..+..+++.+|+..|++..|+++.+...+ .+++.+...|..|+.-+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456666677777777777777777777766654 355555666666665443
No 250
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=2.9 Score=42.19 Aligned_cols=342 Identities=14% Similarity=0.151 Sum_probs=184.4
Q ss_pred HHHhcCChHHHHHHHHHHH--------hcCCCCCHHHHH-----HHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHH
Q 008925 73 ACSESGNVDEAMKIFQKMK--------DSGCKPTTSTYN-----TLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYN 139 (548)
Q Consensus 73 ~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 139 (548)
++.+.-++++-..+...+. ..|++.+..-|. .++.-+...+.+..|+++-..+.... ......|.
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~ 475 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLL 475 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHH
Confidence 3445556666555554443 236666665554 45677778889999999887774321 11156677
Q ss_pred HHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHH
Q 008925 140 ILVRAWCSKNS--IEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR----PNERTCGIIVS 213 (548)
Q Consensus 140 ~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~ 213 (548)
.....+.+..+ -+++++.+++=+.... .+...|..+.+-....|+++-|..+++.=...+.. .+..-+...+.
T Consensus 476 ~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 476 EWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHH
Confidence 77777766643 2334444443333222 45667888888888899999998887643222110 01111222233
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhH
Q 008925 214 GYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGK 293 (548)
Q Consensus 214 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 293 (548)
-+.+.|+.+-...++-.+... .+...+ +....+...|..++.++.+..-. . .+-+.|....+...
T Consensus 555 kaies~d~~Li~~Vllhlk~~---~~~s~l------~~~l~~~p~a~~lY~~~~r~~~~---~---~l~d~y~q~dn~~~ 619 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLKNK---LNRSSL------FMTLRNQPLALSLYRQFMRHQDR---A---TLYDFYNQDDNHQA 619 (829)
T ss_pred HHHhcCCchhHHHHHHHHHHH---HHHHHH------HHHHHhchhhhHHHHHHHHhhch---h---hhhhhhhcccchhh
Confidence 334445555444444444331 111111 11122334466666665553211 1 12223333333333
Q ss_pred HHHHHHHH-HHc-CCCCCHHHHHHHHHHHHHcCCHh---HH-------HHHHHHHHh-CCCCCCHHHHHHHHHHHhccCC
Q 008925 294 CQEIFDDM-VKA-GIEPDIHVFSILAKGYVRAGEPQ---KA-------ESILTSMRK-YGVHPNVVMFTTVISGWCNAVK 360 (548)
Q Consensus 294 a~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~g~~~---~A-------~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~ 360 (548)
+-.+.-+- ... .+.+-..........+.+..... +| +.+.+.+.. .|..-..-+.+--+.-+...|+
T Consensus 620 ~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~ 699 (829)
T KOG2280|consen 620 LASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQ 699 (829)
T ss_pred hhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccc
Confidence 22222111 110 01222223334444454443321 11 222222222 2222233455666677788899
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
..+|.++-.+.. -||...|..-+.+++..+++++-.++-+... ++.-|.-.+.+|.+.|+.+||.+++-+
T Consensus 700 ~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYipr 769 (829)
T KOG2280|consen 700 NKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPR 769 (829)
T ss_pred hHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhc
Confidence 999998877654 5788888888999999999988777665543 133455578899999999999999987
Q ss_pred HH
Q 008925 441 AE 442 (548)
Q Consensus 441 ~~ 442 (548)
..
T Consensus 770 v~ 771 (829)
T KOG2280|consen 770 VG 771 (829)
T ss_pred cC
Confidence 54
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.43 Score=42.89 Aligned_cols=154 Identities=13% Similarity=-0.016 Sum_probs=102.0
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHhccCCh
Q 008925 39 LTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS---GCKPTTSTYNTLIKGYGNVGKP 115 (548)
Q Consensus 39 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 115 (548)
....|++.+|-..++++++. .|.|...+...-.+|.-.|+...-...++++... +++........+..++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34567788888888888776 5667777777778888888888888888887643 2222233334455566678888
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 008925 116 EESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD---AVTYNTLARAYAQYGETYRAEQM 192 (548)
Q Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~ 192 (548)
++|++.-++..+.+ +-|.....++...+-..|++.++.++..+-...--..+ ...|=...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 88888888877653 45667777777888888888888877766433211111 11222233455666888888888
Q ss_pred HHH
Q 008925 193 LFE 195 (548)
Q Consensus 193 ~~~ 195 (548)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 875
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.61 E-value=2.1 Score=41.13 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 139 NILVRAWCSKNSIEEAWNVVYKMVASGIQ-PDAVTYNTLARAYAQYGETYRAEQMLFEMQ 197 (548)
Q Consensus 139 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 197 (548)
..+..++.+.|+.++|++.+++|.+.... ........|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34444555556666666666665543211 122344455556666666666665555543
No 253
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.58 E-value=1.5 Score=38.49 Aligned_cols=201 Identities=15% Similarity=0.067 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 008925 206 RTCGIIVSGYCKEGNMEDAMRFLYRMKEL-EVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMD- 283 (548)
Q Consensus 206 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 283 (548)
.........+...+.+..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444555555555666555555555431 123334445555555555555666666666555543222 111222222
Q ss_pred HHHhCCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCC
Q 008925 284 AWSSAGLMGKCQEIFDDMVKAGI--EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVK 360 (548)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 360 (548)
.+...|+++.|...+.+...... ......+......+...++.+.+...+....... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56677777777777777755221 0123344444444667778888888888777642 22 35567777777777778
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
++.|...+..+.... +.....+..+...+...+..+++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888887753 222445555555555666788888888777753
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.53 E-value=0.46 Score=37.38 Aligned_cols=84 Identities=7% Similarity=0.110 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKP---DSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNT 104 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 104 (548)
+...+..-+....+.|++++|.+.|+.+..+ .|. .......|+.+|.+.+++++|...+++.++.........|..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3344455566667889999999999998876 232 244666788888999999999999999888642222234555
Q ss_pred HHHHHhcc
Q 008925 105 LIKGYGNV 112 (548)
Q Consensus 105 l~~~~~~~ 112 (548)
.+.+++..
T Consensus 88 Y~~gL~~~ 95 (142)
T PF13512_consen 88 YMRGLSYY 95 (142)
T ss_pred HHHHHHHH
Confidence 55554433
No 255
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.53 E-value=0.043 Score=33.34 Aligned_cols=22 Identities=5% Similarity=0.025 Sum_probs=8.4
Q ss_pred HHHHhccCChHHHHHHHHHHHH
Q 008925 352 ISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 352 ~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
...|...|++++|+++|+++++
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.50 E-value=0.37 Score=46.73 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008925 204 NERTCGIIVSGYCKEGNMEDAMRFLYRM 231 (548)
Q Consensus 204 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 231 (548)
+...|..|.....+.|+++-|.+.|.+.
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3444455555555555555555544443
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.84 Score=41.13 Aligned_cols=155 Identities=9% Similarity=0.024 Sum_probs=114.9
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHH----HHHHHHHHhCC
Q 008925 74 CSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTY----NILVRAWCSKN 149 (548)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g 149 (548)
.-..|++.+|-..++++++. .|.|..++...=.++.-.|+.+.-...++++... ..++...| ..+.-++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhc
Confidence 44678999999999999876 4667778888888899999999999999888754 24555333 33344566789
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHH
Q 008925 150 SIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP---NERTCGIIVSGYCKEGNMEDAMR 226 (548)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~ 226 (548)
-+++|.+.-++..+.+ +.|.-.-..+...+...|++.++.++..+-...--.. -..-|-...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999999998876 5677777788888889999999998876644321111 12234444556677799999999
Q ss_pred HHHHHH
Q 008925 227 FLYRMK 232 (548)
Q Consensus 227 ~~~~~~ 232 (548)
+|+.-+
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 998653
No 258
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.45 E-value=0.6 Score=45.32 Aligned_cols=133 Identities=15% Similarity=0.125 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISG 354 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 354 (548)
....+.++..+.+.|..+.|+.+.. |+. .-.....++|+++.|.++.++. ++...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 3445666777777777777776633 222 2234456777777776664432 356678888888
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008925 355 WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREA 434 (548)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 434 (548)
...+|+++-|.+.|++..+ +..|+-.|.-.|+.+.-.++.+.....| -+.....++...|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 8888888888877776543 4456666777777666666665555543 122222344445666666
Q ss_pred HHHHHH
Q 008925 435 KRVLKS 440 (548)
Q Consensus 435 ~~~~~~ 440 (548)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666655
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.42 E-value=1 Score=35.53 Aligned_cols=59 Identities=10% Similarity=0.113 Sum_probs=32.7
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 008925 316 LAKGYVRAGEPQKAESILTSMRKYGVH--PNVVMFTTVISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
-.....+.|++++|.+.|+.+...-.. -....-..++.+|.+.+++++|...+++.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344445566666666666666654110 11234445566666666666666666666664
No 260
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.35 E-value=1.1 Score=35.70 Aligned_cols=85 Identities=9% Similarity=0.139 Sum_probs=45.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 008925 33 TTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNV 112 (548)
Q Consensus 33 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (548)
..++..+...+........++.+...+ +.+....+.++..|++.+ ..+....++. . .+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~----~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K----SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c----cccCCHHHHHHHHHHc
Confidence 345555555666677777777666654 345556666666666543 2333333331 1 1222233455555555
Q ss_pred CChHHHHHHHHHh
Q 008925 113 GKPEESLKLLQLM 125 (548)
Q Consensus 113 g~~~~A~~~~~~~ 125 (548)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5666666555554
No 261
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.34 E-value=0.93 Score=39.81 Aligned_cols=104 Identities=16% Similarity=0.302 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHH
Q 008925 308 PDIHVFSILAKGYVRA-----GEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKT 382 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 382 (548)
-|..+|...+..+... +.++--...++.|.+.|+.-|..+|+.|+..+-+-.-. |. ..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-HH
Confidence 3455555555554322 33443444455566666666666666666555432110 10 01
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008925 383 YETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGL 430 (548)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 430 (548)
+....--|-++ -+=++.++++|...|+.||.++-..++.++.+.|-
T Consensus 128 fQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111111111 22377888888888888888888888888877764
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.34 E-value=1.8 Score=37.85 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=45.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 385 TLLWGYGEAKQPWRAEELLQVMEEKGVRPK---KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.+.+-|.+.|.+--|..-+++|++. .+-+ .+.+..+..+|...|..++|.+.-.-+....|..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 3567788889998899999998865 2211 3356677788889999999888877666555554
No 263
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.24 E-value=2.8 Score=39.62 Aligned_cols=401 Identities=12% Similarity=0.113 Sum_probs=219.6
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV--- 80 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--- 80 (548)
|-.+|.+++-.++++++..- .+--..+|..-+..-...+++.....+|.+++... .+...|...+..-.+.+..
T Consensus 52 ~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl~YIRr~n~~~tG 128 (660)
T COG5107 52 LETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYLEYIRRVNNLITG 128 (660)
T ss_pred HhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHHHHHHhhCccccc
Confidence 44678899999999998752 12123578887887777889999999999998864 3466677666654443321
Q ss_pred ---HHHHHHHHHHHh-cCCCCC-HHHHHHHHHHHh---ccC------ChHHHHHHHHHhhhCCCCCCCH-HHHHHH----
Q 008925 81 ---DEAMKIFQKMKD-SGCKPT-TSTYNTLIKGYG---NVG------KPEESLKLLQLMSQDKNVKPND-RTYNIL---- 141 (548)
Q Consensus 81 ---~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---~~g------~~~~A~~~~~~~~~~~~~~~~~-~~~~~l---- 141 (548)
..-.+.|+-... .++.|- ...|+..+..+- ..| +++.....+.++...+ -.+. ..|+..
T Consensus 129 q~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP--~~nleklW~dy~~fE 206 (660)
T COG5107 129 QKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTP--MGNLEKLWKDYENFE 206 (660)
T ss_pred chhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCc--cccHHHHHHHHHHHH
Confidence 122334444333 234442 334554443332 223 3455556666665421 0111 111110
Q ss_pred --H-----HHHHh--CCCHHHHHHHHHHHHH--CCCC----CCHHH-----------HHHHHHHHHhc-----CC-H-HH
Q 008925 142 --V-----RAWCS--KNSIEEAWNVVYKMVA--SGIQ----PDAVT-----------YNTLARAYAQY-----GE-T-YR 188 (548)
Q Consensus 142 --~-----~~~~~--~g~~~~a~~~~~~~~~--~~~~----~~~~~-----------~~~l~~~~~~~-----g~-~-~~ 188 (548)
+ +-+.. .--+..|.+.+++... .|+. .+..+ |...|.--... |+ . ..
T Consensus 207 ~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qR 286 (660)
T COG5107 207 LELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQR 286 (660)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHH
Confidence 0 01110 1123455555555432 1211 11222 22222211111 11 1 12
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHH-
Q 008925 189 AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLME- 267 (548)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 267 (548)
.--++++.... +...+..|..-..-+...++-+.|+......... .|+... -+...|--..+.+.....|+...
T Consensus 287 i~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~--~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 287 IHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTM--FLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchhe--eHHHHHhhcccHHHHhhhHHHHHH
Confidence 22334444332 2224444444444455566666666665544331 222111 11111111111111111111100
Q ss_pred ------Hc-------CC---------------CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHH
Q 008925 268 ------EF-------GV---------------KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG-IEPDIHVFSILAK 318 (548)
Q Consensus 268 ------~~-------~~---------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~ 318 (548)
.. +. ..-...|...+....+..-++.|..+|-++.+.+ ..+++.++++++.
T Consensus 362 ~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E 441 (660)
T COG5107 362 DLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIE 441 (660)
T ss_pred HHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHH
Confidence 00 00 0112356667777778888999999999999988 5677888899998
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCC
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPNVVMF-TTVISGWCNAVKMQRAMSIYEKMCEIGINPN--LKTYETLLWGYGEAKQ 395 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 395 (548)
-++ .|++..|..+|+--... .||...| +..+..+...++-..|..+|+..++. +..+ ...|..++.--..-|+
T Consensus 442 ~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~ 517 (660)
T COG5107 442 YYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGS 517 (660)
T ss_pred HHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcc
Confidence 665 67899999999876664 4666655 56677778889999999999987753 2333 4678888888888999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHH
Q 008925 396 PWRAEELLQVMEEKGVRPKKSTIQL 420 (548)
Q Consensus 396 ~~~A~~~~~~~~~~~~~p~~~~~~~ 420 (548)
...+..+-++|.+. .|...+...
T Consensus 518 lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 518 LNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred hHHHHhHHHHHHHH--cCcHhHHHH
Confidence 98888888888763 455444433
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.19 E-value=2.4 Score=38.61 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCChhhHHH---HHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 008925 242 VFNSLIKGFLDIKDSDGVDK---ALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKA 304 (548)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (548)
++..++.+|...+..+...+ +++.+...... .+..+..-+..+.+.++.+.+.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 44455555555554443332 33333222111 2233334444444455555666666655544
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.14 E-value=2 Score=37.47 Aligned_cols=173 Identities=14% Similarity=0.152 Sum_probs=86.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 008925 36 VAALTRQKRFKSILSLISKVEKDGMKP---DSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNV 112 (548)
Q Consensus 36 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (548)
+..-.+.|++++|.+.|+.+.... +- ...+...++.++.+.++++.|+..+++....-.......|...+.+++..
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence 344456677777777777776552 22 23345555566667777777777777776642111122343344443321
Q ss_pred -------CCh---HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHH
Q 008925 113 -------GKP---EESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTY--NTLARAY 180 (548)
Q Consensus 113 -------g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~ 180 (548)
.+. ..|..-|+.+.+. -|+.. -...|...+..+. |.... ..+.+.|
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~r---yPnS~-------------Ya~dA~~~i~~~~------d~LA~~Em~IaryY 177 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQR---YPNSR-------------YAPDAKARIVKLN------DALAGHEMAIARYY 177 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHH---CCCCc-------------chhhHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 111 2222333333322 12211 0011111111110 00000 2355677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 181 AQYGETYRAEQMLFEMQNNQVRPN---ERTCGIIVSGYCKEGNMEDAMRFLYRMK 232 (548)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 232 (548)
.+.|.+..|..-++.|++. .+-+ ...+-.+..+|...|-.++|...-.-+.
T Consensus 178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 8888888888888877776 2222 2344556677777787777766654443
No 266
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.11 E-value=1.1 Score=34.36 Aligned_cols=61 Identities=15% Similarity=0.300 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 008925 314 SILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (548)
...+..+...|.-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.++.+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333444555555555555555554322 3455555555556666666666666666665555
No 267
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.10 E-value=0.5 Score=41.39 Aligned_cols=87 Identities=15% Similarity=0.321 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------ChHHHHH
Q 008925 27 PTLITYTTLVAALTR-----QKRFKSILSLISKVEKDGMKPDSILFNAMINACSESG----------------NVDEAMK 85 (548)
Q Consensus 27 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~A~~ 85 (548)
.|-.+|...+..+.. .+..+-.-..++.|.+.|+..|..+|+.|++.+-+.. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 344556555555543 2445555666666777777777777777776654321 2234555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 008925 86 IFQKMKDSGCKPTTSTYNTLIKGYGNVG 113 (548)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (548)
++++|...|+.||..+-..|+.++.+.+
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 5555555555555555555555555544
No 268
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.10 E-value=1.1 Score=34.35 Aligned_cols=135 Identities=13% Similarity=0.179 Sum_probs=61.9
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHH
Q 008925 147 SKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTC---GIIVSGYCKEGNMED 223 (548)
Q Consensus 147 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~ 223 (548)
-.|..++..++..+...+ .+..-+|-++--....-+-+-..++++.+-+. .|.... ..++.+|...|.
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcc---
Confidence 456666777777766653 24444444444333334444444444444321 122211 122333333322
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 008925 224 AMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVK 303 (548)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (548)
+.......+..+...|+-+...+++..+.+. -.+++..+..+..+|.+.|+..++.+++.++-+
T Consensus 85 ---------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 85 ---------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 2222333344555666666666666666542 245666666666777777777777777776666
Q ss_pred cCC
Q 008925 304 AGI 306 (548)
Q Consensus 304 ~~~ 306 (548)
.|+
T Consensus 149 kG~ 151 (161)
T PF09205_consen 149 KGL 151 (161)
T ss_dssp TT-
T ss_pred hch
Confidence 653
No 269
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.91 E-value=3.2 Score=38.48 Aligned_cols=79 Identities=10% Similarity=0.135 Sum_probs=37.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQP 396 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (548)
+.-+...|+...|.++-.+.. -|+...|-..+.+++..++|++-.++-.. .-++..|..++.+|...|..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 333444555555555444432 24555555555555555555544433211 11224455555555555555
Q ss_pred HHHHHHHHH
Q 008925 397 WRAEELLQV 405 (548)
Q Consensus 397 ~~A~~~~~~ 405 (548)
.+|..+..+
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555555544
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.89 E-value=0.09 Score=31.93 Aligned_cols=26 Identities=35% Similarity=0.597 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
+..+...|...|++++|+++|+++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 271
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.89 E-value=1.4 Score=36.64 Aligned_cols=90 Identities=17% Similarity=0.077 Sum_probs=65.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCHHHH-----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008925 351 VISGWCNAVKMQRAMSIYEKMCEIGINPNLKTY-----ETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSW 425 (548)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (548)
+...+...+++++|..-++..+.. |....+ ..|.+.....|.+++|+..++.....+.. ......-++++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence 445677889999999999888763 222222 34566778889999999988876553322 22344567899
Q ss_pred HHcCCHHHHHHHHHHHHhcc
Q 008925 426 RAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 426 ~~~g~~~~A~~~~~~~~~~~ 445 (548)
...|+.++|+..|+++.+..
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 99999999999999988665
No 272
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.88 E-value=3 Score=38.02 Aligned_cols=163 Identities=11% Similarity=0.141 Sum_probs=86.9
Q ss_pred ccccCChhhHHHHHHHHHHCC--CCCCHH-----HHHHHHHHHHccC-CHHHHHHHHHHHHHC--------CCCCCH---
Q 008925 4 LVGKGKPHEAHYIFNCLIEEG--HRPTLI-----TYTTLVAALTRQK-RFKSILSLISKVEKD--------GMKPDS--- 64 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~-----~~~~l~~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~~--- 64 (548)
..++|+++.|..++.++.... ..|+.. .+..++......+ +++.|..++++..+. ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357889999999999887643 122221 2333444445566 887777777665432 122332
Q ss_pred --HHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHH
Q 008925 65 --ILFNAMINACSESGNVD---EAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYN 139 (548)
Q Consensus 65 --~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 139 (548)
.++..++.+|...+..+ +|..+++.+... .+-.+.++..-+..+.+.++.+++.+.+.+|..... -....+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~--~~e~~~~ 159 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD--HSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc--cccchHH
Confidence 35556666676666544 444455555433 222244454556666667777777777777776522 1223333
Q ss_pred HHHHHH---HhCCCHHHHHHHHHHHHHCCCCCCH
Q 008925 140 ILVRAW---CSKNSIEEAWNVVYKMVASGIQPDA 170 (548)
Q Consensus 140 ~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~ 170 (548)
..+..+ .. .....+...++.++...+.|..
T Consensus 160 ~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 160 SILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 333332 22 2234455555555444334443
No 273
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.81 E-value=0.04 Score=31.20 Aligned_cols=30 Identities=23% Similarity=0.172 Sum_probs=14.3
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 369 EKMCEIGINPNLKTYETLLWGYGEAKQPWRA 399 (548)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 399 (548)
+++++.. |.|...|..|+..|...|++++|
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhh
Confidence 3444433 34445555555555555555544
No 274
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.48 E-value=0.12 Score=29.08 Aligned_cols=30 Identities=17% Similarity=0.094 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 417 TIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
+|..++.++...|++++|+..++++.+.+|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 455666666666666666666666665544
No 275
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.44 E-value=0.085 Score=31.47 Aligned_cols=35 Identities=31% Similarity=0.389 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008925 416 STIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPN 450 (548)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 450 (548)
.++..++.+|...|++++|+.+++++.+....+.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G 37 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLG 37 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhc
Confidence 46677788888888888888888887765554443
No 276
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.41 E-value=2.1 Score=34.16 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=70.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 008925 280 TIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAV 359 (548)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 359 (548)
.++..+...+.......+++.+...+ +.+....+.++..|++.. ..+....++. .++......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 45556666677777777777777665 456667777777777653 3344444442 123333445666677777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008925 360 KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA-KQPWRAEELLQVMEEKGVRPKKSTIQLVADSW 425 (548)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (548)
.++++.-++.++-. ... .+..+... ++++.|.+++.+ ..+...|..++..+
T Consensus 84 l~~~~~~l~~k~~~-----~~~----Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~ 135 (140)
T smart00299 84 LYEEAVELYKKDGN-----FKD----AIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKAL 135 (140)
T ss_pred cHHHHHHHHHhhcC-----HHH----HHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHH
Confidence 77777777766532 111 22222223 667777776654 12445555555444
No 277
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.34 E-value=6.8 Score=39.79 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=10.5
Q ss_pred hCCCHHHHHHHHHHHHH
Q 008925 147 SKNSIEEAWNVVYKMVA 163 (548)
Q Consensus 147 ~~g~~~~a~~~~~~~~~ 163 (548)
...+.+.|+.+|+.+.+
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 34566666666666655
No 278
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.25 E-value=0.15 Score=28.70 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 416 STIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
..+..++.++...|++++|++.++++.+.+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3456677777777777777777777765554
No 279
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.23 E-value=0.059 Score=30.49 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=17.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 008925 17 FNCLIEEGHRPTLITYTTLVAALTRQKRFKSIL 49 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 49 (548)
|+++++..|. +..+|+.++..+...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3444444332 5556666666666666666554
No 280
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.22 E-value=14 Score=43.00 Aligned_cols=318 Identities=10% Similarity=0.016 Sum_probs=167.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 008925 69 AMINACSESGNVDEAMKIFQKMKDSGC--KPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWC 146 (548)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (548)
.+..+-.+.+.+..|...++.-..... ......+..+...|...++++...-+...-.. .|+ ...-+-...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s---l~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS---LYQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc---HHHHHHHHH
Confidence 445566678889999999988311100 11223444555589999999988877764222 233 223344566
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHH
Q 008925 147 SKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGII-VSGYCKEGNMEDAM 225 (548)
Q Consensus 147 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~ 225 (548)
..|++..|...|+.+.+.+ ++...+++-++......|.+....-..+-...... +....++.+ +.+--+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~s-e~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRS-EEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccC-HHHHHHHHHHHHHHhhhcchhhhh
Confidence 7899999999999999875 44477888888888888888877776655544322 223333332 34445677777766
Q ss_pred HHHHHHHhCCCCCCHHHHHH--HHHHHHcCCChhh--HHHHHHHHHHcCCCC---------CHHHHHHHHHHHHhCCChh
Q 008925 226 RFLYRMKELEVHPNLVVFNS--LIKGFLDIKDSDG--VDKALTLMEEFGVKP---------DVVTFSTIMDAWSSAGLMG 292 (548)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~--a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~ 292 (548)
.... + .+..+|.. ++........-+. -.+..+.+.+.-+.| -...|..++....-..-
T Consensus 1539 ~~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-- 1609 (2382)
T KOG0890|consen 1539 SYLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-- 1609 (2382)
T ss_pred hhhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH--
Confidence 6654 1 12222322 2333222222111 112222222211110 01223333322221110
Q ss_pred HHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH-HhC----CCCC-CHHHHHHHHHHHhccCChH
Q 008925 293 KCQEIFDDMVKAG----IEPDIHVFSILAKGYVRAGEPQKAESILTSM-RKY----GVHP-NVVMFTTVISGWCNAVKMQ 362 (548)
Q Consensus 293 ~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 362 (548)
....+...+.. ...+..-|..-+..-....+..+-+--+++. ... +... -..+|....+.....|+++
T Consensus 1610 --~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1610 --ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred --HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 00111111110 0111111212221111111122211111111 111 1111 2357888888888899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 363 RAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
.|...+-.+.+.+ -+..+...+..+...|+...|+.++++.++.
T Consensus 1688 ~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999888888765 3345666778888999999999999998854
No 281
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.20 E-value=4.4 Score=37.08 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc--cC----ChHHHHHHHHHhhhCCCC--CCCHHHHHHHHHHHHhCCC-
Q 008925 80 VDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGN--VG----KPEESLKLLQLMSQDKNV--KPNDRTYNILVRAWCSKNS- 150 (548)
Q Consensus 80 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~- 150 (548)
+++.+.+++.+.+.|+..+..+|-+....... .. ...+|..+|+.|.+...+ .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556788888888888887666554333333 11 356778888888776432 2233444444433 2333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008925 151 ---IEEAWNVVYKMVASGIQPDAV--TYNTLARAYAQYGE--TYRAEQMLFEMQNNQVRPNERTCGIIVSGY 215 (548)
Q Consensus 151 ---~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 215 (548)
.+.+..+|+.+.+.|+..+.. ....++........ ..++.++++.+.+.++++....|..++-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 345666777777766654432 22222222221111 346667777777777776666665555433
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.05 E-value=0.79 Score=40.93 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHHHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME-----EKGVRPKKSTIQL 420 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~ 420 (548)
.++..++..+...|+.+.+...+++..... +-+...|..++.+|.+.|+...|+..|+++. +.|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345556666666677777777777776654 5566667777777777777777777776654 3566666665544
Q ss_pred HHH
Q 008925 421 VAD 423 (548)
Q Consensus 421 l~~ 423 (548)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
No 283
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.97 E-value=8.1 Score=39.27 Aligned_cols=272 Identities=15% Similarity=0.102 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhc
Q 008925 151 IEEAWNVVYKMVASGIQPDAVTYNTLARA-----YAQYGETYRAEQMLFEMQN-------NQVRPNERTCGIIVSGYCKE 218 (548)
Q Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 218 (548)
...|.++++...+.| +......++.+ +....+.+.|..+++.+.+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567999999988876 33333333333 3355789999999998876 44 344666778888764
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH----
Q 008925 219 G-----NMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLD---IKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWS---- 286 (548)
Q Consensus 219 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 286 (548)
. +.+.|..++.+..+.| .|+... .+...+.. ..+...|.+++...-..|.. ..+-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 3 6788999999998876 333332 33333332 24567899999998888733 22323333332
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH-HH---Hh--c--c
Q 008925 287 SAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVI-SG---WC--N--A 358 (548)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~---~~--~--~ 358 (548)
-..+.+.|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+...|.. ...+-...+ .. .. . .
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~ 452 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVI 452 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccc
Confidence 2237889999999999887 3332222222333333 7777777777766665432 221111111 11 11 1 2
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCC
Q 008925 359 VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA----KQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRA----IGL 430 (548)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 430 (548)
.+...+...+.+....| +......|...|... .+++.|...+......+ ......++..+-. ..
T Consensus 453 ~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~- 524 (552)
T KOG1550|consen 453 STLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV- 524 (552)
T ss_pred cchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-
Confidence 35667777788877755 666666777666543 35788888888887654 3344444443322 23
Q ss_pred HHHHHHHHHHHHhcc
Q 008925 431 AREAKRVLKSAEEDR 445 (548)
Q Consensus 431 ~~~A~~~~~~~~~~~ 445 (548)
+..|.+++..+.+.+
T Consensus 525 ~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 525 LHLAKRYYDQASEED 539 (552)
T ss_pred hHHHHHHHHHHHhcC
Confidence 788888888876544
No 284
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.92 E-value=8.9 Score=39.61 Aligned_cols=429 Identities=12% Similarity=0.082 Sum_probs=216.3
Q ss_pred hHHHHHHHHHHC-CCCCCH--HHHHHHHHHHH-ccCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCChHH
Q 008925 12 EAHYIFNCLIEE-GHRPTL--ITYTTLVAALT-RQKRFKSILSLISKVEKDGMKPDSI-----LFNAMINACSESGNVDE 82 (548)
Q Consensus 12 ~A~~~~~~~~~~-~~~~~~--~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~ 82 (548)
.|+..++.+.+. .++|.. .++..++..+. ...+++.|...+++.....-.++-. .-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 456677777642 233322 45666777776 6789999999999875442222221 2234456666666555
Q ss_pred HHHHHHHHHhcC----CCCCHHHHHHH-HHHHhccCChHHHHHHHHHhhhCCC--CCCCHHHHHHHHHHH--HhCCCHHH
Q 008925 83 AMKIFQKMKDSG----CKPTTSTYNTL-IKGYGNVGKPEESLKLLQLMSQDKN--VKPNDRTYNILVRAW--CSKNSIEE 153 (548)
Q Consensus 83 A~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~--~~~g~~~~ 153 (548)
|...+++.++.- ..+-...+..+ +..+...++...|.+.++.+..... ..|....+..++.+. ...+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 999988876531 11122233333 3333334799999999988876542 233344444444443 34566677
Q ss_pred HHHHHHHHHHCC---------CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHh-------CC----------CC---
Q 008925 154 AWNVVYKMVASG---------IQPDAVTYNTLARAY--AQYGETYRAEQMLFEMQN-------NQ----------VR--- 202 (548)
Q Consensus 154 a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~-------~~----------~~--- 202 (548)
+.+.++.+.... ..|...+|..+++.+ ...|+++.+.+.++++.+ .. ++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~ 277 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNI 277 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeec
Confidence 777777763321 123456666666554 456777777766665432 10 00
Q ss_pred ----------CCHHHH---------HHHH--HHHHhcCCHHHHHHHHHHHHhC--------CCCCC--H------HHHHH
Q 008925 203 ----------PNERTC---------GIIV--SGYCKEGNMEDAMRFLYRMKEL--------EVHPN--L------VVFNS 245 (548)
Q Consensus 203 ----------~~~~~~---------~~l~--~~~~~~g~~~~A~~~~~~~~~~--------~~~~~--~------~~~~~ 245 (548)
+....| .-++ -..+..+..++|.+++++..+. ...+. . ..|..
T Consensus 278 ~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~ 357 (608)
T PF10345_consen 278 GEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLR 357 (608)
T ss_pred ccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHH
Confidence 011111 1111 1233445554665555544221 11111 1 12222
Q ss_pred HHH---------HHHcCCChhhHHHHHHHHHHcCC-CCC-------HHHHHHHHHHHHhCCChhHHHHHHH--------H
Q 008925 246 LIK---------GFLDIKDSDGVDKALTLMEEFGV-KPD-------VVTFSTIMDAWSSAGLMGKCQEIFD--------D 300 (548)
Q Consensus 246 l~~---------~~~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~--------~ 300 (548)
.+. ..+-.+++..+...++.+.+... .|+ +..+...+-.+...|+.+.|...|. .
T Consensus 358 ~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~ 437 (608)
T PF10345_consen 358 YLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEA 437 (608)
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhh
Confidence 211 23456888889999988876421 111 2223333334457799999999998 3
Q ss_pred HHHcCCCCCHHHHHH--HHHHHHHcCC--HhH--HHHHHHHHHhC-CCCC--CHHHHHHH-HHHHhcc--CChHHHHHHH
Q 008925 301 MVKAGIEPDIHVFSI--LAKGYVRAGE--PQK--AESILTSMRKY-GVHP--NVVMFTTV-ISGWCNA--VKMQRAMSIY 368 (548)
Q Consensus 301 ~~~~~~~~~~~~~~~--l~~~~~~~g~--~~~--A~~~~~~~~~~-~~~p--~~~~~~~l-~~~~~~~--g~~~~A~~~~ 368 (548)
....+...+..++.. ++..+...+. ..+ +..+++.+... .-.| +..++..+ +.++... -...++...+
T Consensus 438 ~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l 517 (608)
T PF10345_consen 438 ANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHL 517 (608)
T ss_pred hccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHH
Confidence 444443333333322 2222222222 223 66677666542 1122 33344443 3333221 1223555555
Q ss_pred HHHHHcC---CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCC--HHHHHH-----HHHHHHHcCCHHHH
Q 008925 369 EKMCEIG---INPNL---KTYETLLWGYGEAKQPWRAEELLQVMEE-KGVRPK--KSTIQL-----VADSWRAIGLAREA 434 (548)
Q Consensus 369 ~~~~~~~---~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~--~~~~~~-----l~~~~~~~g~~~~A 434 (548)
.+.++.- ...+. .+++.+...+. .|+..+.......... ..-.|| ...|.. +.+.+...|+.++|
T Consensus 518 ~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka 596 (608)
T PF10345_consen 518 QEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKA 596 (608)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 4443311 11121 12333333333 6777776555544332 111233 335533 33557788999999
Q ss_pred HHHHHHHH
Q 008925 435 KRVLKSAE 442 (548)
Q Consensus 435 ~~~~~~~~ 442 (548)
....++..
T Consensus 597 ~~~~~~~~ 604 (608)
T PF10345_consen 597 EEARQQLD 604 (608)
T ss_pred HHHHHHHH
Confidence 98887753
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.92 E-value=0.15 Score=29.25 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 417 TIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
++..++.+|.+.|++++|+.++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888888999999999988854
No 286
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.91 E-value=11 Score=40.58 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=12.3
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHHH
Q 008925 174 NTLARAYAQYG--ETYRAEQMLFEMQ 197 (548)
Q Consensus 174 ~~l~~~~~~~g--~~~~a~~~~~~~~ 197 (548)
..++.+|.+.+ ..+.++.....+.
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 34555555555 4455555554444
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.79 E-value=1.4 Score=36.83 Aligned_cols=96 Identities=10% Similarity=0.111 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH--H
Q 008925 137 TYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD--AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP-NERTCGI--I 211 (548)
Q Consensus 137 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~--l 211 (548)
.+..++..|++.|+.+.|++.|.++.+....+. ...+..+++.....+++..+...+.++...-..+ |....+. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455666666667777777777766665533332 2344556666666677766666666554321111 1111111 1
Q ss_pred --HHHHHhcCCHHHHHHHHHHHH
Q 008925 212 --VSGYCKEGNMEDAMRFLYRMK 232 (548)
Q Consensus 212 --~~~~~~~g~~~~A~~~~~~~~ 232 (548)
+-.+...+++..|-+.|-+..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 112334567777777765553
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.75 E-value=1.9 Score=36.06 Aligned_cols=97 Identities=12% Similarity=0.002 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHH--H
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPD--SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT-TSTYN--T 104 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~--~ 104 (548)
..+..++..|.+.|+.+.|++.|.++......+. ...+-.++......+++..+...+.++...--... ....+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4567777778888888888888887776543333 33566677777777787777777776654311111 11111 1
Q ss_pred H--HHHHhccCChHHHHHHHHHhh
Q 008925 105 L--IKGYGNVGKPEESLKLLQLMS 126 (548)
Q Consensus 105 l--~~~~~~~g~~~~A~~~~~~~~ 126 (548)
. .-.+...+++.+|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1 112234566777766665554
No 289
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.70 E-value=1 Score=40.28 Aligned_cols=80 Identities=10% Similarity=0.239 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh----CCCCCCCHHHHH
Q 008925 64 SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQ----DKNVKPNDRTYN 139 (548)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~ 139 (548)
..++..++..+...|+++.+...++++.... +-+...|..++.+|...|+...|+..|+++.+ .-|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4466677777777777777777777777653 34666777777777777777777777776654 345667666666
Q ss_pred HHHHH
Q 008925 140 ILVRA 144 (548)
Q Consensus 140 ~l~~~ 144 (548)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 65555
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.54 E-value=0.17 Score=29.10 Aligned_cols=22 Identities=18% Similarity=0.030 Sum_probs=9.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 008925 384 ETLLWGYGEAKQPWRAEELLQV 405 (548)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~ 405 (548)
..|+..|.+.|++++|++++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
No 291
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.39 E-value=0.4 Score=43.16 Aligned_cols=88 Identities=18% Similarity=0.047 Sum_probs=46.1
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.|.++|++++|++.|...+...+. +.+++..-..+|.+..+|..|..-.+..+..+ ..-...|..-+.+-...|...+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 466677777777777666654322 56666666666666666666665555544321 1112233333333333444455
Q ss_pred HHHHHHHHHh
Q 008925 83 AMKIFQKMKD 92 (548)
Q Consensus 83 A~~~~~~~~~ 92 (548)
|.+-++..+.
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 5555554444
No 292
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.97 E-value=5.1 Score=33.97 Aligned_cols=64 Identities=17% Similarity=0.063 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhC
Q 008925 64 SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD 128 (548)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 128 (548)
+.+||.|.-.+...|+++.|.+.|+...+.... ...+...-.-.+.-.|+++-|.+-|.+.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 445666666666666666666666666554211 1112222222233345666665555555443
No 293
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.80 E-value=3.1 Score=34.75 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=54.1
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPN-----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA 393 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (548)
-+.+.|++++|..-|..++.. +++. ...|..-..++.+.+.++.|+.--.++++.+ +.....+..-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 355667777777777766664 2221 2234444556667777777777777777654 33334444445567777
Q ss_pred CChHHHHHHHHHHHHC
Q 008925 394 KQPWRAEELLQVMEEK 409 (548)
Q Consensus 394 g~~~~A~~~~~~~~~~ 409 (548)
..+++|++-|+++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7777777777777663
No 294
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.69 E-value=2.2 Score=35.53 Aligned_cols=94 Identities=16% Similarity=0.028 Sum_probs=74.1
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 008925 353 SGWCNAVKMQRAMSIYEKMCEIGINPNL-----KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWR 426 (548)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~ 426 (548)
.-+...|++++|..-|..+++.- ++.. ..|..-..++.+.+.++.|+.-..+.++. .|+.. .+..-+.+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHH
Confidence 33567899999999999999873 4443 23555566788999999999999888885 46554 6666678899
Q ss_pred HcCCHHHHHHHHHHHHhccCCCC
Q 008925 427 AIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
+...+++|+.-++++.+.+|...
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchH
Confidence 99999999999999998887653
No 295
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.49 E-value=18 Score=39.07 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=41.2
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHH
Q 008925 245 SLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIH--VFSILAKGYVR 322 (548)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 322 (548)
+....+.....+++|.-.|+..-+. .-.+.+|..+|++.+|+.+..++.. ..+.. +-..|+..+..
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555443221 1234556666666666666655532 11111 12455556666
Q ss_pred cCCHhHHHHHHHHHHh
Q 008925 323 AGEPQKAESILTSMRK 338 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~ 338 (548)
.+++-+|-++..+...
T Consensus 1012 ~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLS 1027 (1265)
T ss_pred cccchhHHHHHHHHhc
Confidence 6666666666655543
No 296
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.46 E-value=5.1 Score=32.66 Aligned_cols=123 Identities=12% Similarity=0.026 Sum_probs=55.8
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHhccCCh
Q 008925 286 SSAGLMGKCQEIFDDMVKAGIEPDIH-VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVV-MFTTV--ISGWCNAVKM 361 (548)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g~~ 361 (548)
.+.+..++|+.-|..+.+.|...-+. ............|+-..|...|+++-.....|-.. -...| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455556666666665554333222 11222333445556666666666555432222211 11111 1223445555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 362 QRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
++...-.+.+...+-+.....-..|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555554444333222223334455555556666666666655554
No 297
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.33 E-value=1.8 Score=35.54 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
+++|...|+++.+. .|+...|+.-+.... +|-++..++.+.
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 44455555555543 466666665554442 244444444443
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.27 E-value=5.2 Score=32.33 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=24.7
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhhh
Q 008925 75 SESGNVDEAMKIFQKMKDSGCKPTTS-TYNTLIKGYGNVGKPEESLKLLQLMSQ 127 (548)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 127 (548)
.+.++.+++..++..+... .|... .-..-...+...|++.+|+.+|+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3455556666666555543 23221 112223334455666666666666544
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.20 E-value=0.37 Score=27.02 Aligned_cols=27 Identities=26% Similarity=0.035 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 382 TYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
+|..++.+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555544
No 300
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.94 E-value=11 Score=35.59 Aligned_cols=65 Identities=18% Similarity=0.097 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 274 DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEP---DIHVFSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
...++..++..+.+.|.++.|...+..+...+... .+.+...-+..+...|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677778888888888888888888887643111 344455556667778888888888877776
No 301
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.69 E-value=0.49 Score=26.47 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 417 TIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
++..++.++...|++++|.+.++++.+.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456667777777777777777777665443
No 302
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.31 E-value=2.1 Score=35.18 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008925 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQ-----------PWRAEELLQVMEEKGVRPKKSTIQLVADSW 425 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (548)
+++|+.-|++++..+ |....++..++.+|...+. +++|..+|+++.+ ..|+...|+.-+...
T Consensus 51 iedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 345555566666543 3334677777777755432 5566666666665 468888887655444
No 303
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.12 E-value=21 Score=36.92 Aligned_cols=221 Identities=15% Similarity=0.147 Sum_probs=90.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh---C
Q 008925 213 SGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFG-VKPDVVTFSTIMDAWSS---A 288 (548)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---~ 288 (548)
..+.-.|+++.|++++-+. .....+.+.+...+..|.-.+-.+... ..+.... -.|.+..+..++..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 4445579999999988771 112233333333333322211111111 2222211 11122557778888865 4
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHhHHH-----------HHHHH---HHhCCCCCCHH----HHH
Q 008925 289 GLMGKCQEIFDDMVKAGIEPDIHVFS-ILAKGYVRAGEPQKAE-----------SILTS---MRKYGVHPNVV----MFT 349 (548)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~-----------~~~~~---~~~~~~~p~~~----~~~ 349 (548)
.+...|.+++--+....-+.....+. .+-+.....++++.-+ -++++ +.. +..+.. ...
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~--~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIK--FDDDEDFLREIIE 418 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT---SSSSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccC--CCCcHHHHHHHHH
Confidence 57778888887766543222222222 2222333333222111 11222 111 121112 223
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCC-----------hHHHHHHHHHHHHCC-----CC
Q 008925 350 TVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLL-WGYGEAKQ-----------PWRAEELLQVMEEKG-----VR 412 (548)
Q Consensus 350 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~-----------~~~A~~~~~~~~~~~-----~~ 412 (548)
....-+...|++++|+.+|.-+.+.. .-....+.++ .+...... ...|..+.+.....+ +.
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~ 496 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVS 496 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhcc
Confidence 33445667888888888888766431 0112233332 22322222 223444444332211 11
Q ss_pred CC-HHHHHHHHH-----HHHHcCCHHHHHHHHHHHH
Q 008925 413 PK-KSTIQLVAD-----SWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 413 p~-~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~ 442 (548)
+. ..++..|.+ -+...|++++|++.+++..
T Consensus 497 ~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 497 RKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 21 234444433 2467899999999998853
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.96 E-value=0.6 Score=26.05 Aligned_cols=27 Identities=19% Similarity=0.000 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 382 TYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
.+..+...+...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554
No 305
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.59 E-value=10 Score=32.64 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=9.1
Q ss_pred HhcCCHHHHHHHHHHH
Q 008925 216 CKEGNMEDAMRFLYRM 231 (548)
Q Consensus 216 ~~~g~~~~A~~~~~~~ 231 (548)
...+.+++|.++|.+.
T Consensus 25 gg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERA 40 (288)
T ss_pred CCCcchHHHHHHHHHH
Confidence 3344666666666554
No 306
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.55 E-value=6.6 Score=38.77 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=83.2
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008925 112 VGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQ 191 (548)
Q Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 191 (548)
.|+++.|..++..+. ....+.++..+.+.|..++|+++ .+|.... .....+.|+++.|.+
T Consensus 599 rrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHH
Confidence 455555555443332 12334555666666666666543 2232221 123345677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC
Q 008925 192 MLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV 271 (548)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 271 (548)
+..+.. +..-|..|..+....|++..|.++|.+..+ |..|+-.+...|+.+....+-....+.|
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g- 722 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG- 722 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-
Confidence 665543 556677777777777888777777776654 3455556666666665555555555554
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 008925 272 KPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300 (548)
Q Consensus 272 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (548)
+.+.. ..+|...|+++++.+++..
T Consensus 723 ~~N~A-----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 723 KNNLA-----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ccchH-----HHHHHHcCCHHHHHHHHHh
Confidence 22222 2245556777777666544
No 307
>PRK09687 putative lyase; Provisional
Probab=90.41 E-value=14 Score=33.69 Aligned_cols=236 Identities=13% Similarity=0.061 Sum_probs=113.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHH
Q 008925 168 PDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNM----EDAMRFLYRMKELEVHPNLVVF 243 (548)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~ 243 (548)
+|.......+..+...|..+ +...+..+... +|...-...+.++...|+. .++...+..+... .++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 45555555555555555432 33333333322 2445555555555566552 3455555555332 3455555
Q ss_pred HHHHHHHHcCCChhh--HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 244 NSLIKGFLDIKDSDG--VDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYV 321 (548)
Q Consensus 244 ~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (548)
...+.++...+.... ...+...+...-..++..+-...+.++...++ +.+...+-.+++ .++..+-...+.++.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg 184 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALN 184 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHh
Confidence 444544444332111 11112222111112344444455566666655 345555555554 234444444444444
Q ss_pred HcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 322 RAG-EPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 322 ~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (548)
..+ +...+...+..+.. .++..+-...+.++.+.|+ ..|+..+-+.++.+ + .....+.++...|.. +|+
T Consensus 185 ~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~ 254 (280)
T PRK09687 185 SNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLL 254 (280)
T ss_pred cCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHH
Confidence 432 13345555555553 3455556666666666666 45565555555532 2 233456666666664 566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH
Q 008925 401 ELLQVMEEKGVRPKKSTIQLVADSW 425 (548)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (548)
..+..+.+. .||..+......+|
T Consensus 255 p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 255 PVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHhh--CCChhHHHHHHHHH
Confidence 666666653 34555444443333
No 308
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.32 E-value=17 Score=34.50 Aligned_cols=66 Identities=15% Similarity=0.034 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 308 PDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP---NVVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
....++..++..+.+.|.++.|...+..+...+... ++.....-+...-..|+..+|+..++..++
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345578888899999999999999999888743111 233444445566677888999999888877
No 309
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.25 E-value=18 Score=34.82 Aligned_cols=121 Identities=11% Similarity=0.054 Sum_probs=75.1
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAE 190 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 190 (548)
..|++-.|-+-+....+.. +.++.............|+++.+.+.+....+. +.....+...+++.....|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 4566665554443333332 223333333344566778888888877665443 2345667777888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008925 191 QMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELE 235 (548)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 235 (548)
.+-..|+...+. ++.............|-++++.-.++++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888888776655 44444444444445677788888888876654
No 310
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.16 E-value=0.66 Score=25.63 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=17.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 419 QLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 419 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
..++.++.+.|++++|.+.++++.+..|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3455666666666666666666655444
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.06 E-value=8.9 Score=31.02 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=27.1
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHc
Q 008925 321 VRAGEPQKAESILTSMRKYGVHPNVVMF-TTVISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
...++.+.+..++..+.-. .|..... ..-...+...|++.+|+++|+.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3455666666666666553 3433322 12233345566666666666665543
No 312
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.87 E-value=16 Score=33.56 Aligned_cols=97 Identities=15% Similarity=0.256 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCC----HhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCC-
Q 008925 291 MGKCQEIFDDMVKAGI---EPDIHVFSILAKGYVRAGE----PQKAESILTSMRKYGVHPNVV--MFTTVISGWCNAVK- 360 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~- 360 (548)
...|..+|+.|.+... .++..++..|+.. ...+ .+.+..+++.+.+.|+..+.. ....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3456666666665421 1222233333322 2222 234555666666655544332 22233322222111
Q ss_pred -hHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 361 -MQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 361 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
...+.++++.+.+.|+++....|..++-.
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 34566666666666666666665555433
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.83 E-value=0.015 Score=46.91 Aligned_cols=51 Identities=6% Similarity=0.219 Sum_probs=21.6
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008925 38 ALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQ 88 (548)
Q Consensus 38 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 88 (548)
.+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 333344444444444444443333334444444444444444444444433
No 314
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.34 E-value=11 Score=30.95 Aligned_cols=30 Identities=13% Similarity=0.329 Sum_probs=14.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 008925 52 ISKVEKDGMKPDSILFNAMINACSESGNVD 81 (548)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 81 (548)
++.+.+.+++|+...+..++..+.+.|++.
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 333344445555555555555555555443
No 315
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.26 E-value=1.2 Score=40.23 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=65.5
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQ 395 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (548)
+.-|.++|.+++|++.+...... .| |.+++..-..+|.+...+..|..-.+.++..+ ..-...|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 56788888888888888887764 34 77778778888888888887777766666543 1111223322333333444
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008925 396 PWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVL 438 (548)
Q Consensus 396 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 438 (548)
..+|.+-++..++ +.|+..-+. ..+.+...+.|+.-+.
T Consensus 181 ~~EAKkD~E~vL~--LEP~~~ELk---K~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPKNIELK---KSLARINSLRERKIAT 218 (536)
T ss_pred HHHHHHhHHHHHh--hCcccHHHH---HHHHHhcchHhhhHHh
Confidence 4455555554444 456533322 2333333444544433
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.12 E-value=2.3 Score=38.08 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=65.7
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 008925 94 GCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKN--VKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAV 171 (548)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 171 (548)
|.+.+..+...++..-....+++.++..+-++..... ..|+. +-...++.+ -.-++++++.++..=++-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 3344455555555555556777788777777755311 11111 112233333 2345667888887777888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 172 TYNTLARAYAQYGETYRAEQMLFEMQNN 199 (548)
Q Consensus 172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 199 (548)
+++.+++.+.+.+++.+|..+...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888877766544
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.02 E-value=4.5 Score=34.03 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=59.9
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCC--CCCCCHHHHHHHHHHHHhCCC
Q 008925 73 ACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDK--NVKPNDRTYNILVRAWCSKNS 150 (548)
Q Consensus 73 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 150 (548)
.+.+.|+ +.|++.|-.+...+.--++.....|+..|. ..+.++++.++.+..... +-.+|+..+.+|+..+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455555 678888888877765556666666666555 678899999988776532 226788999999999999999
Q ss_pred HHHHH
Q 008925 151 IEEAW 155 (548)
Q Consensus 151 ~~~a~ 155 (548)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 99885
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.91 E-value=32 Score=35.79 Aligned_cols=177 Identities=15% Similarity=0.210 Sum_probs=104.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 008925 33 TTLVAALTRQKRFKSILSLISKVEKDGMKPDS--ILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYG 110 (548)
Q Consensus 33 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (548)
..-+..+.+..-++-|+.+.+. .+.+++. .......+.+.+.|++++|...|-+.+.. +.|. .++.-|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhc
Confidence 3445666677778888776654 2223332 23444455666788999888877766543 2332 3455556
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAE 190 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 190 (548)
...+..+-..+++.+.+.+ -.+...-..|+.+|.+.++.++-.++.+... .|.- ..-....+..+.+.+-.++|.
T Consensus 409 daq~IknLt~YLe~L~~~g--la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKG--LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred CHHHHHHHHHHHHHHHHcc--cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 6666666667777776643 3344555678888999998888776665543 2211 111334556666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008925 191 QMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRM 231 (548)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 231 (548)
-+-..... +......++ -..+++++|++++..+
T Consensus 484 ~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 55544322 334444443 3457788888877665
No 319
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.88 E-value=24 Score=34.31 Aligned_cols=98 Identities=10% Similarity=0.050 Sum_probs=65.0
Q ss_pred CCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHH-CCCCCCHHH
Q 008925 342 HPNVVMF-TTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE--AKQPWRAEELLQVMEE-KGVRPKKST 417 (548)
Q Consensus 342 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~-~~~~p~~~~ 417 (548)
.|+..++ +.++..+-..|-.++|...+..+.... ||+...|..++..-.. +-+..-+.++++.|.. .| .++..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4566655 566777777888888888888888764 6666777777653221 2226667788888874 45 56667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 418 IQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 418 ~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
|......-...|..+-+-.++.++.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHH
Confidence 7666665567777776666665543
No 320
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.87 E-value=31 Score=35.68 Aligned_cols=49 Identities=16% Similarity=-0.080 Sum_probs=31.5
Q ss_pred hccCChHHHHHHHHHHHHcCC-CCC-------HHHHHHHHHHHHhcCChHHHHHHHH
Q 008925 356 CNAVKMQRAMSIYEKMCEIGI-NPN-------LKTYETLLWGYGEAKQPWRAEELLQ 404 (548)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (548)
+-.+++..|...++.+.+..- .|+ +..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 357889899999998886321 111 2222233334456799999999997
No 321
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.84 E-value=0.48 Score=38.03 Aligned_cols=84 Identities=17% Similarity=0.083 Sum_probs=62.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008925 351 VISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGL 430 (548)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 430 (548)
++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++.. +.--...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 56677778888999999999997665566888899999999998878888887621 11223456778888899
Q ss_pred HHHHHHHHHHH
Q 008925 431 AREAKRVLKSA 441 (548)
Q Consensus 431 ~~~A~~~~~~~ 441 (548)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 99999888864
No 322
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.68 E-value=13 Score=31.10 Aligned_cols=89 Identities=16% Similarity=-0.044 Sum_probs=49.6
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHPNVVMF-----TTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (548)
...+...+++++|..-++..+.. |....+ ..|.......|.+++|+.+++...+.+. .......-++++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 34556666777777766666542 222222 2344455566777777776666554321 1122333456666
Q ss_pred hcCChHHHHHHHHHHHHCC
Q 008925 392 EAKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~ 410 (548)
..|+.++|..-|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777776653
No 323
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.30 E-value=22 Score=33.20 Aligned_cols=106 Identities=8% Similarity=0.060 Sum_probs=65.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccC------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 17 FNCLIEEGHRPTLITYTTLVAALTRQK------------RFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAM 84 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 84 (548)
|+..++.++. |+.+|..++..--..- -.+.-+.+++++++.+ +.+...+..++..+.+..+.++..
T Consensus 8 l~~~v~~~P~-di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 8 LNRRVRENPH-DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4445555443 7888888776433221 1345677778877763 456667777778888888888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhc---cCChHHHHHHHHHh
Q 008925 85 KIFQKMKDSGCKPTTSTYNTLIKGYGN---VGKPEESLKLLQLM 125 (548)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~ 125 (548)
+-++++.... +-+...|...+..... .-.++....+|.+.
T Consensus 86 ~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 86 KKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred HHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 8888887752 2356667666655443 12344454444443
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.14 E-value=15 Score=31.06 Aligned_cols=72 Identities=14% Similarity=0.072 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008925 362 QRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE---KGVRPKKSTIQLVADSWRAIGLAREA 434 (548)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A 434 (548)
+.|.+.|-++...+.-.++.....|+..|. ..+.++++.++.+.++ .+-.+|++++..++..+.+.|++++|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444432333333333333333 3445555555555442 11134455555555555555555554
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.07 E-value=12 Score=29.82 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=24.1
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhhh
Q 008925 76 ESGNVDEAMKIFQKMKDSGCKPTTS-TYNTLIKGYGNVGKPEESLKLLQLMSQ 127 (548)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 127 (548)
..++.+++..+++.|.-. .|+.. .-..-...+...|++++|+++|+.+..
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 355566666666655443 22221 111122334455666666666666544
No 326
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.06 E-value=19 Score=35.75 Aligned_cols=130 Identities=14% Similarity=0.105 Sum_probs=75.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 008925 278 FSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN 357 (548)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 357 (548)
.+.++..+.+.|-.++|+++ .+|+.. -.....+.|+++.|.++..+.. +..-|..|..+...
T Consensus 617 rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 34455566666666666554 233221 1233456777777777665543 45567788888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008925 358 AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRV 437 (548)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 437 (548)
.|++..|.+.|.++.+. ..|+-++...|+.+.-..+-....+.| ..+. ..-++...|++++..++
T Consensus 679 ~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N~-----AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQG-KNNL-----AFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhc-ccch-----HHHHHHHcCCHHHHHHH
Confidence 88888888877776653 345555666666554444444444433 1222 22345567777777777
Q ss_pred HHH
Q 008925 438 LKS 440 (548)
Q Consensus 438 ~~~ 440 (548)
+.+
T Consensus 744 Li~ 746 (794)
T KOG0276|consen 744 LIS 746 (794)
T ss_pred HHh
Confidence 665
No 327
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.97 E-value=8 Score=33.45 Aligned_cols=83 Identities=16% Similarity=0.032 Sum_probs=41.7
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChH
Q 008925 320 YVRAGEPQKAESILTSMRKYGVHPNVVMF-TTVISGWCNAVKMQRAMSIYEKMCEIGINPNL-KTYETLLWGYGEAKQPW 397 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 397 (548)
|.....++.|+..+.+.+. +.|+..+| ..-+.++.+..+++.+..--.++++. .||. .....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 4444455556655555544 24554333 44444555555555555555555553 3333 23334444455555566
Q ss_pred HHHHHHHHH
Q 008925 398 RAEELLQVM 406 (548)
Q Consensus 398 ~A~~~~~~~ 406 (548)
+|+..+++.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 666666555
No 328
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.94 E-value=38 Score=35.55 Aligned_cols=89 Identities=11% Similarity=0.015 Sum_probs=50.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHH-HHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHH
Q 008925 181 AQYGETYRAEQMLFEMQNNQVRPNER-------TCGIIV-SGYCKEGNMEDAMRFLYRMKELE----VHPNLVVFNSLIK 248 (548)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~ 248 (548)
....++.+|..++.++...-..|+.. .++.+- ......|++++|.++.+.....- ..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44567777777777665432222211 122221 22334677777777766665431 1233455666666
Q ss_pred HHHcCCChhhHHHHHHHHHHc
Q 008925 249 GFLDIKDSDGVDKALTLMEEF 269 (548)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~ 269 (548)
+..-.|+++.|..+.....+.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH
Confidence 777777787777777665554
No 329
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.83 E-value=10 Score=34.28 Aligned_cols=99 Identities=18% Similarity=0.284 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 008925 204 NERTCGIIVSGYCKEGNMEDAMRFLYRMKELE---VHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFST 280 (548)
Q Consensus 204 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (548)
...+...++..-....+++.++..+-++.... ..++ .+-...+..+. .-++.+++.++..=++.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 33334444444444556666666666554421 0011 11111222222 2244566666666566677777777777
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc
Q 008925 281 IMDAWSSAGLMGKCQEIFDDMVKA 304 (548)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~ 304 (548)
+++.+.+.+++..|..+...++..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777666666544
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.77 E-value=1.3 Score=26.05 Aligned_cols=26 Identities=8% Similarity=0.235 Sum_probs=13.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMC 372 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 372 (548)
+++.+...|...|++++|..+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44455555555555555555555544
No 331
>PRK09687 putative lyase; Provisional
Probab=87.74 E-value=21 Score=32.44 Aligned_cols=220 Identities=13% Similarity=0.008 Sum_probs=140.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh----hhHHHHHHHHHHcCCCCCHHHH
Q 008925 203 PNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDS----DGVDKALTLMEEFGVKPDVVTF 278 (548)
Q Consensus 203 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 278 (548)
+|.......+..+...|..+ +...+..+.. .++...-...+.++...|+. .++...+..+... .++...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 46666666777777776533 3333444443 35666777777777777764 3466666655333 3555555
Q ss_pred HHHHHHHHhCCCh-----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 279 STIMDAWSSAGLM-----GKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVIS 353 (548)
Q Consensus 279 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 353 (548)
...+.++...+.. ..+...+..+.. .++..+-...+.++.+.++ +.|...+-.+.+. +|...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5556666554321 233344333332 4566777778888888876 4677777777763 45555566666
Q ss_pred HHhccC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008925 354 GWCNAV-KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAR 432 (548)
Q Consensus 354 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 432 (548)
++...+ +...+...+..++. .++..+-...+.++.+.|+ ..|+..+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 666653 24577777887775 5688888888899999888 56777777776643 2 234577888888885
Q ss_pred HHHHHHHHHHhcc
Q 008925 433 EAKRVLKSAEEDR 445 (548)
Q Consensus 433 ~A~~~~~~~~~~~ 445 (548)
+|+..+.++.+.+
T Consensus 252 ~a~p~L~~l~~~~ 264 (280)
T PRK09687 252 TLLPVLDTLLYKF 264 (280)
T ss_pred hHHHHHHHHHhhC
Confidence 6888888877543
No 332
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.63 E-value=14 Score=30.27 Aligned_cols=134 Identities=15% Similarity=0.135 Sum_probs=82.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 008925 14 HYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS 93 (548)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (548)
.+..+.+.+.+.+|+...+..++..+.+.|++.....++. .++-+|.......+-.+. +....+.++--.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3455666677899999999999999999999877666554 445556554444432222 2334444444444432
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 94 GCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0114567778888999999999998875332 12222445555555665554444444433
No 333
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.42 E-value=11 Score=29.39 Aligned_cols=71 Identities=10% Similarity=0.139 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 377 NPNLKTYETLLWGYGEAKQ---PWRAEELLQVMEEKGVRPK--KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.++..+-..+.+++.++.+ ..+.+.+++...+.. .|+ .+....++-.+.+.+++++++++++...+..|+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 5666777777788877654 445677777777522 232 3345556677888888888888888877665543
No 334
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.39 E-value=39 Score=35.07 Aligned_cols=53 Identities=6% Similarity=-0.197 Sum_probs=37.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 387 LWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
+..+...|+...|...+..+.+. .+......++......|.++.|+.......
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~ 466 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGK 466 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhch
Confidence 34566778888888888887763 345566667777778888888877765543
No 335
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.35 E-value=11 Score=36.18 Aligned_cols=108 Identities=15% Similarity=0.092 Sum_probs=64.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC---CC--CC---CHHHHHHHHHHHHcCCChhhHHHHHHHHHH-------cCCCCC---
Q 008925 213 SGYCKEGNMEDAMRFLYRMKEL---EV--HP---NLVVFNSLIKGFLDIKDSDGVDKALTLMEE-------FGVKPD--- 274 (548)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~~~~~---~~--~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~--- 274 (548)
..+.-.|++.+|.+++...--. |. .| .-..||.+...+.+.+.+..+..+|....+ .|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3445567777777766543211 11 11 112346666666666666666666655543 233332
Q ss_pred --------HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008925 275 --------VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR 322 (548)
Q Consensus 275 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (548)
..+|| ..-.|...|++-.|.+.|...++. +..++..|..|..+|..
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 12333 344677889999999999888876 36778888888888764
No 336
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.84 E-value=5.9 Score=28.65 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=17.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 008925 333 LTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMC 372 (548)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 372 (548)
++.+...++.|++....+.+.+|.+.+++.-|+++|+-..
T Consensus 30 mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 30 LNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444333
No 337
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.99 E-value=16 Score=31.62 Aligned_cols=90 Identities=19% Similarity=0.211 Sum_probs=52.0
Q ss_pred hccCChHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHhcCChH-------HHHHHHHHHHHCCCCC----C-HHH
Q 008925 356 CNAVKMQRAMSIYEKMCE----IGINPNL--KTYETLLWGYGEAKQPW-------RAEELLQVMEEKGVRP----K-KST 417 (548)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~----~~~~~~~--~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~p----~-~~~ 417 (548)
.....+++|++.|.-++- .+.+|.. ..+..+.+.|...|+.+ .|.+.|.+..+..-.| + ...
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 344455666665555442 1223332 33555667777777633 4555555555332221 1 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008925 418 IQLVADSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 418 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
.-.++.+..+.|+.++|.++|.++....
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 5566788888999999999999887444
No 338
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.94 E-value=12 Score=27.54 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 008925 330 ESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMC 372 (548)
Q Consensus 330 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 372 (548)
.+-++.+...++.|++....+.+.+|.+.+++..|+++|+-+.
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444555555555555555555555555555444
No 339
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.42 E-value=17 Score=28.98 Aligned_cols=53 Identities=9% Similarity=0.162 Sum_probs=34.4
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASG 165 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 165 (548)
..++++++..+++.+.--..-.+...++. ...+...|++.+|+++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 46788888888887765321222233333 334667888888888888887754
No 340
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.30 E-value=38 Score=32.89 Aligned_cols=109 Identities=14% Similarity=0.042 Sum_probs=63.5
Q ss_pred HHHHcCCHhHHHHHHHHHHh---CCC--CCC---HHHHHHHHHHHhccCChHHHHHHHHHHHH-------cCCCCC----
Q 008925 319 GYVRAGEPQKAESILTSMRK---YGV--HPN---VVMFTTVISGWCNAVKMQRAMSIYEKMCE-------IGINPN---- 379 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~---~~~--~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~---- 379 (548)
.+...|++.+|.+++...-- .|. .|. -..||.|+-.+.+.|.+.-+..+|.++++ .|+.|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 44556777777766644321 111 111 12345666556666777777777776663 243332
Q ss_pred ------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008925 380 ------LKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAI 428 (548)
Q Consensus 380 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 428 (548)
........-.|.+.|++-.|.+.|.+.... +..++..|..++.+|...
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 112233455677888888888888887753 345677888888887643
No 341
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.94 E-value=1.6 Score=22.71 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 008925 419 QLVADSWRAIGLAREAKRVLK 439 (548)
Q Consensus 419 ~~l~~~~~~~g~~~~A~~~~~ 439 (548)
..++.++...|++++|+..++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345666666666666666654
No 342
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.65 E-value=95 Score=36.92 Aligned_cols=61 Identities=16% Similarity=-0.052 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 380 LKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
..+|...++.....|.++.|...+-.+.+.+ -+..+...+..+...|+...|+.++++..+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4678889999999999999999887777654 234555678899999999999999999873
No 343
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.42 E-value=58 Score=34.31 Aligned_cols=229 Identities=15% Similarity=0.098 Sum_probs=127.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHH-HHHcCCChhhHHHHHHHHHHcC----CCCCHHHHHH
Q 008925 213 SGYCKEGNMEDAMRFLYRMKELEVHPNL-------VVFNSLIK-GFLDIKDSDGVDKALTLMEEFG----VKPDVVTFST 280 (548)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~ 280 (548)
.......++.+|..++.++...-..|+. ..|+.+-. .....|+++.+.++.+.....= ..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 3445678999999998887654323222 23444322 2346788999999888776642 2334566777
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHH--HHHHHcCCHh--HHHHHHHHHHhCC--CCC----CHHH
Q 008925 281 IMDAWSSAGLMGKCQEIFDDMVKAGIEPD---IHVFSILA--KGYVRAGEPQ--KAESILTSMRKYG--VHP----NVVM 347 (548)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~--~~~~~~g~~~--~A~~~~~~~~~~~--~~p----~~~~ 347 (548)
+..+..-.|++++|..+.+...+..-.-+ ...+..+. ..+...|+.. +....|....... -.| -..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 77888889999999998887765421222 22333332 3455667333 2233333332210 011 1234
Q ss_pred HHHHHHHHhcc-CChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHH
Q 008925 348 FTTVISGWCNA-VKMQRAMSIYEKMCEIGINPNLKT--YETLLWGYGEAKQPWRAEELLQVMEEKGVRP----KKSTIQL 420 (548)
Q Consensus 348 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~ 420 (548)
...+..++.+. +...++..-++--......|-... +..|+......|++++|...+.++......+ +......
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 44555555441 222222222222222221222222 2367888899999999999999987533222 2222222
Q ss_pred HH--HHHHHcCCHHHHHHHHHHH
Q 008925 421 VA--DSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 421 l~--~~~~~~g~~~~A~~~~~~~ 441 (548)
.+ ..+...|+..+|.....+.
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhc
Confidence 32 3456789999988888773
No 344
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.27 E-value=14 Score=27.11 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 008925 47 SILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS 93 (548)
Q Consensus 47 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (548)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555555555566677777777777777777777777777776554
No 345
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.46 E-value=3.8 Score=22.68 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444445555555555555554443
No 346
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.09 E-value=33 Score=30.39 Aligned_cols=207 Identities=13% Similarity=0.121 Sum_probs=121.1
Q ss_pred CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC-
Q 008925 165 GIQPDAVTYNTLARA-YAQYGETYRAEQMLFEMQNNQVRPNE---RTCGIIVSGYCKEGNMEDAMRFLYRMKEL---EV- 236 (548)
Q Consensus 165 ~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~- 236 (548)
+-.||+..-|..-.+ -.+..++++|+.-|.++++....... .++..++....+.|++++....+.+++.- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345665543322111 12344788999999988876433233 34455678888999999999988887531 11
Q ss_pred -CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC----C
Q 008925 237 -HPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEF-----GVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG----I 306 (548)
Q Consensus 237 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~ 306 (548)
.-+..+.++++.......+.+-....++.-... +-+.--.|-..+...|...+.+.....+++++...- .
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 123456666766666555555555555432221 111111234456777777788888888887776531 1
Q ss_pred CCC-------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----hccCChHHHHHHHHHHH
Q 008925 307 EPD-------IHVFSILAKGYVRAGEPQKAESILTSMRKY-GVHPNVVMFTTVISGW-----CNAVKMQRAMSIYEKMC 372 (548)
Q Consensus 307 ~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~ 372 (548)
..| ...|..-+++|...++-.+-..++++.+.. ..-|.+... .+++-| .+.|++++|..-|-++-
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHH
Confidence 222 245666778888888888888888877642 123444333 334333 46788888765544444
No 347
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.63 E-value=1.9 Score=23.62 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=9.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHh
Q 008925 317 AKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
+.++.+.|++++|...|+++++
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 348
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.94 E-value=5.7 Score=27.48 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=26.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 008925 392 EAKQPWRAEELLQVMEEKGVRPK--KSTIQLVADSWRAIGLAREAKRVL 438 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 438 (548)
...+.++|+..|+..++.-..|. ..++..+..+++..|++++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667777766665322222 124555566666667766666554
No 349
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.92 E-value=10 Score=37.38 Aligned_cols=118 Identities=10% Similarity=0.028 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 008925 26 RPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTL 105 (548)
Q Consensus 26 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 105 (548)
.|--..+|..+--+...|+...|...+..+........-+....|.....+.|-...|..++.+.+... ...+-++-.+
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~ 682 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSL 682 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhc
Confidence 344444555555555677777777777766543222223344556666666666777777777666543 3344566667
Q ss_pred HHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 008925 106 IKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWC 146 (548)
Q Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (548)
.+++....+++.|++.|++..+.. +.+...-+.|...-|
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~--~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLT--TKCPECENSLKLIRC 721 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcC--CCChhhHHHHHHHHH
Confidence 777777777788887777776542 334455555554444
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.65 E-value=40 Score=30.38 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008925 174 NTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRM 231 (548)
Q Consensus 174 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 231 (548)
+...+.|...|.+.+|.++.+..+..++ .+...+..++..+...||--.+.+-++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445566677777777777776665533 25566666677777777766666555554
No 351
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.62 E-value=12 Score=31.86 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 008925 279 STIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYG--VHPNVVMFTTVIS 353 (548)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~ 353 (548)
+..++.+.+.+.+.+++...+.-++.+ |.|...-..+++.|+-.|++++|..-++-.-... ..+....|..++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344556667778888888888877775 5566677778888888888888877776655432 1222345555554
No 352
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.39 E-value=18 Score=26.28 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 008925 258 GVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMV 302 (548)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (548)
++.+.++.+......|++....+.+++|.+.+++..|.++++...
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555555555666666666777777777777777777776655
No 353
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.28 E-value=3.5 Score=21.82 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 418 IQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 418 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
+..++.++...|++++|...++.+.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44455556666666666666665543
No 354
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.07 E-value=37 Score=29.62 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=42.6
Q ss_pred cccCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHH
Q 008925 5 VGKGKPHEAHYIFNCLIEEGHRPTL-ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSI-LFNAMINACSESGNVDE 82 (548)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 82 (548)
....++..|+..|.+++..+ |+. .-|..-+.++.+..+++.+..--...++. .|+.+ ....+.........++.
T Consensus 21 f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccH
Confidence 34445666666666665543 333 33444455555566666655555555442 33433 33334444555556666
Q ss_pred HHHHHHHH
Q 008925 83 AMKIFQKM 90 (548)
Q Consensus 83 A~~~~~~~ 90 (548)
|+..+.+.
T Consensus 97 aI~~Lqra 104 (284)
T KOG4642|consen 97 AIKVLQRA 104 (284)
T ss_pred HHHHHHHH
Confidence 66666655
No 355
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.63 E-value=20 Score=35.47 Aligned_cols=90 Identities=17% Similarity=0.136 Sum_probs=45.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhH
Q 008925 180 YAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGV 259 (548)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 259 (548)
+...|+...|.+.+.......+.........|.....+.|....|..++.+.+... ...+.++..+..++.-..+.+.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 33455555555555444333222223333444444555555555666655555443 33344555555666666666666
Q ss_pred HHHHHHHHHcC
Q 008925 260 DKALTLMEEFG 270 (548)
Q Consensus 260 ~~~~~~~~~~~ 270 (548)
++.+++..+..
T Consensus 696 ~~~~~~a~~~~ 706 (886)
T KOG4507|consen 696 LEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHhcC
Confidence 66666655543
No 356
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.30 E-value=4.7 Score=24.35 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=14.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC
Q 008925 35 LVAALTRQKRFKSILSLISKVEKD 58 (548)
Q Consensus 35 l~~~~~~~g~~~~a~~~~~~~~~~ 58 (548)
|..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666665543
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.21 E-value=45 Score=29.55 Aligned_cols=148 Identities=15% Similarity=0.264 Sum_probs=72.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC----C-------CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHc-CCCCCHHH
Q 008925 210 IIVSGYCKEGNMEDAMRFLYRMKELEV----H-------PNLVVFNSLIKGFLDIKDSDGVDKALTLMEEF-GVKPDVVT 277 (548)
Q Consensus 210 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~ 277 (548)
.+...|...+++.+..++++++...-. . .-...|..-++.|....+-.....++++.... ..-|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 455556666666666666655543210 1 11245666677777777766677777665432 12233333
Q ss_pred HHHHHHH-----HHhCCChhHHHHHHHHHH----HcCCCCCHH---HHHHHHHHHHHcCC----HhHHHHHHHHHHhCCC
Q 008925 278 FSTIMDA-----WSSAGLMGKCQEIFDDMV----KAGIEPDIH---VFSILAKGYVRAGE----PQKAESILTSMRKYGV 341 (548)
Q Consensus 278 ~~~l~~~-----~~~~~~~~~a~~~~~~~~----~~~~~~~~~---~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~ 341 (548)
.. +++- ..+.|.+++|..-|-++- +.| .|... -|..|..++.+.|- -++| .-..-
T Consensus 230 mG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iNPFDsQEA-------KPyKN 300 (440)
T KOG1464|consen 230 MG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGINPFDSQEA-------KPYKN 300 (440)
T ss_pred Hh-HHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCCCCccccc-------CCCCC
Confidence 32 3333 346677777754333333 234 34333 24445555555541 1111 11112
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHH
Q 008925 342 HPNVVMFTTVISGWCNAVKMQRAMSI 367 (548)
Q Consensus 342 ~p~~~~~~~l~~~~~~~g~~~~A~~~ 367 (548)
.|.+...+.++.+|.. .+..+-.++
T Consensus 301 dPEIlAMTnlv~aYQ~-NdI~eFE~I 325 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQN-NDIIEFERI 325 (440)
T ss_pred CHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence 3455566778887754 344443333
No 358
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.46 E-value=71 Score=31.38 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008925 98 TTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLA 177 (548)
Q Consensus 98 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 177 (548)
|....-+++..+.....+.-.+.+-.+|..- ..+-..+..++++|... ..++-..+++++.+..+. |...-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 3444445555555554555555555555442 23444455555555544 334444555555444211 222222333
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 008925 178 RAYAQYGETYRAEQMLFEMQN 198 (548)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~ 198 (548)
..|-+ ++...+..+|.++..
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHH
Confidence 33322 444455555544443
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.58 E-value=5.6 Score=27.54 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=25.7
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHH
Q 008925 41 RQKRFKSILSLISKVEKDGMKPD--SILFNAMINACSESGNVDEAMKI 86 (548)
Q Consensus 41 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 86 (548)
.+.+.++|+..++..++.-..+. -.++..|+.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665432221 12455566666666666665554
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.94 E-value=5.9 Score=23.94 Aligned_cols=23 Identities=35% Similarity=0.245 Sum_probs=12.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 008925 386 LLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555553
No 361
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.83 E-value=2.9 Score=38.02 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=58.3
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHH
Q 008925 322 RAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL-KTYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 400 (548)
..|.+++|++.|...+... ++....|..-..++.+.++...|++-+..+++. .||. ..|-.-..+..-.|++.+|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 3455666666666665542 233334455555566666666666666666654 2332 23333344444566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 401 ELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
+.+....+.++.+....+ +-...-+.+..++-...+++
T Consensus 203 ~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er 240 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYER 240 (377)
T ss_pred HHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHH
Confidence 666666665544433322 22333334444443333333
No 362
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=76.68 E-value=58 Score=29.43 Aligned_cols=84 Identities=5% Similarity=0.093 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCCCCH
Q 008925 132 KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS-GIQPDAVTYNTLARAYAQYGETYRAEQMLFE-----MQNNQVRPNE 205 (548)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~ 205 (548)
.++..+...++..+++.+++.+-.++++..... +...|...|..+++.....|+..-..++..+ +.+.++..+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~ 278 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTD 278 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCH
Confidence 445555555666666666666666666555443 3344555666666666666665555555443 2233444444
Q ss_pred HHHHHHHHHH
Q 008925 206 RTCGIIVSGY 215 (548)
Q Consensus 206 ~~~~~l~~~~ 215 (548)
..-..+-..+
T Consensus 279 ~L~~~L~~LF 288 (292)
T PF13929_consen 279 ELRSQLSELF 288 (292)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 363
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.21 E-value=63 Score=29.60 Aligned_cols=83 Identities=17% Similarity=0.160 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-------CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----cc
Q 008925 290 LMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAG-------EPQKAESILTSMRKYGVHPNVVMFTTVISGWC----NA 358 (548)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~ 358 (548)
+..+|..+++.+.+.|..+-..+...+...|..-. +...|...+.++-..+ +......+...|. -.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 55666666666666552221222333333333321 2235666666666554 3333444444442 23
Q ss_pred CChHHHHHHHHHHHHcC
Q 008925 359 VKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 359 g~~~~A~~~~~~~~~~~ 375 (548)
.+.++|...|.++.+.|
T Consensus 205 ~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 205 RDLKKAFRWYKKAAEQG 221 (292)
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 46677777777777765
No 364
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=75.93 E-value=1.3e+02 Score=33.06 Aligned_cols=247 Identities=11% Similarity=0.031 Sum_probs=129.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008925 167 QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSL 246 (548)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (548)
.++..+-...+..+...+..+ +...+..+++. ++..+-...+.++.+.+........+..++. .+|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHHHHHH
Confidence 456666666666666666533 44444444432 2444444444444333221112223333333 2455555555
Q ss_pred HHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 008925 247 IKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEP 326 (548)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (548)
+..+...+..+ .. .+-...+ .+|...-...+.++...+..+. +..+.. .++..+-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 55554433211 11 2222222 3455555555566655544322 122221 45666666777777766654
Q ss_pred hH-HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008925 327 QK-AESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQV 405 (548)
Q Consensus 327 ~~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (548)
+. +...+..+.+ .+|...-...+.++...|....+...+..+++ .++...-...+.++...+. +++...+-.
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 42 3445555554 35666677777788877776555555555654 4566666666777777765 456666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 406 MEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 406 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
+.+ .|+...-...+.++.+.+....+...+..+.
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 664 4666666666677766533445666666655
No 365
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.54 E-value=62 Score=29.22 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=28.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 008925 280 TIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSM 336 (548)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 336 (548)
.....|..+|.+.+|.++.++.+..+ +.+...+-.|+..+...|+--.|..-++.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33444555555555555555555544 444555555555555555544444444333
No 366
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=75.44 E-value=71 Score=29.85 Aligned_cols=120 Identities=11% Similarity=0.008 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHH
Q 008925 328 KAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE---AKQPWRAEELLQ 404 (548)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 404 (548)
.-+.+++++++.+ +.+...+..++..+.+..+.++..+-|++++... +-+...|...+..... .-.++.....|.
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3445555555542 1233444555555555556666666666666542 3344555555544332 122334444443
Q ss_pred HHHH------CCC------CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 405 VMEE------KGV------RPK-----KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 405 ~~~~------~~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
+.++ .+. .++ ..++..+...+..+|..+.|..+++...+..=-.|
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCc
Confidence 3321 110 011 11233344556778999999999999887765444
No 367
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.42 E-value=29 Score=25.42 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=28.9
Q ss_pred HHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 008925 106 IKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASG 165 (548)
Q Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 165 (548)
+..+...|++++|..+.+.+ ..||...|.+|... +.|..+++...+..+-.+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCC-----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 34455666666666655544 24666665555433 4455555555555555554
No 368
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.18 E-value=1.1e+02 Score=31.81 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=35.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh---
Q 008925 142 VRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQV-RPNERTCGIIVSGYCK--- 217 (548)
Q Consensus 142 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~--- 217 (548)
...+.-+|+++.|++++-.. .+...+.+.+...+..|.-.+-..... ..+..... .|...-+..|+..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 34455678888888877661 112334444433333222111111111 22221110 1112445667766665
Q ss_pred cCCHHHHHHHHHHHHhC
Q 008925 218 EGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 218 ~g~~~~A~~~~~~~~~~ 234 (548)
..++.+|.++|--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 45778888887776654
No 369
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.85 E-value=73 Score=29.23 Aligned_cols=52 Identities=12% Similarity=0.076 Sum_probs=22.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHH
Q 008925 142 VRAWCSKNSIEEAWNVVYKMVASGIQPDAV---TYNTLARAYAQYGETYRAEQMLFE 195 (548)
Q Consensus 142 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~ 195 (548)
..+..+.|+..+|.+.++++.+. .|-.. ....|+.++....-+.+...++-+
T Consensus 282 AMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 282 AMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455555555555554443 11111 123345555544444444444433
No 370
>PRK10941 hypothetical protein; Provisional
Probab=73.80 E-value=66 Score=29.08 Aligned_cols=59 Identities=14% Similarity=0.038 Sum_probs=33.9
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
+.+-.+|.+.++++.|+++.+.++... |.++.-+.--+-.|.+.|.+..|..=++..++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344455556666666666666666553 44444455555556666666666666665553
No 371
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.59 E-value=2.3 Score=38.71 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=71.1
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHH
Q 008925 356 CNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREA 434 (548)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A 434 (548)
...|.+++|++.|..+++.+ ++....|..-..++.+.+++..|++=+....+ +.||.. -|..-..+-...|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 45688999999999999986 67777788888889999999999999988877 456654 555556677778999999
Q ss_pred HHHHHHHHhcc
Q 008925 435 KRVLKSAEEDR 445 (548)
Q Consensus 435 ~~~~~~~~~~~ 445 (548)
.+.++.+.+.+
T Consensus 202 a~dl~~a~kld 212 (377)
T KOG1308|consen 202 AHDLALACKLD 212 (377)
T ss_pred HHHHHHHHhcc
Confidence 99999988655
No 372
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.59 E-value=1.3e+02 Score=31.93 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=33.2
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTL--ITYTTLVAALTRQKRFKSILSLISKVE 56 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 56 (548)
+|+..|++++|+++-+. .|+. .++..-+..+.+.++|..|.+++.++.
T Consensus 367 ~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 367 TYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 56777888888776553 2333 344455667778889999999888873
No 373
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.55 E-value=31 Score=24.87 Aligned_cols=63 Identities=13% Similarity=0.027 Sum_probs=33.2
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCH
Q 008925 368 YEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-KKSTIQLVADSWRAIGLA 431 (548)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 431 (548)
+++.++.+ |.|...-..+...+...|++++|++.+-.+++..... +...-..++.++...|.-
T Consensus 11 l~~~~a~~-P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 11 LEAALAAN-PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 33444433 5555666667777777777777777776666543222 223444555555555543
No 374
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.33 E-value=98 Score=30.49 Aligned_cols=178 Identities=11% Similarity=0.138 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 204 NERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMD 283 (548)
Q Consensus 204 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (548)
|.....+++..+...-.+.-...+..+|...| .+-..+..+++.|... ..+....+|+++.+.... |...-..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 55566667777777767777777777777644 5566777777777766 456667777777765433 3333344444
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhc
Q 008925 284 AWSSAGLMGKCQEIFDDMVKAGIEPD-----IHVFSILAKGYVRAGEPQKAESILTSMRKY-GVHPNVVMFTTVISGWCN 357 (548)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 357 (548)
.|.+ ++.+.+..+|..+...-++.. ...|..|...- ..+.+....+...+... |...-...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 677777777777765432211 12344433221 33555555555555432 222233445555566677
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 358 AVKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
..++.+|++++..+++.+ ..|...-..++.-
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 777777777777777654 3444444444433
No 375
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.22 E-value=36 Score=25.36 Aligned_cols=79 Identities=16% Similarity=0.109 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 008925 79 NVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVV 158 (548)
Q Consensus 79 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 158 (548)
..++|..+.+.+...+. -...+--.-+..+.+.|++++|+ ..-. . ...||...|.+|.. .+.|-.+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~~~-~--~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--LLPQ-C--HCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--HHHT-T--S--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--Hhcc-c--CCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 45556666665555431 11222223334455566666662 1111 1 12455555554433 2555555666555
Q ss_pred HHHHHCC
Q 008925 159 YKMVASG 165 (548)
Q Consensus 159 ~~~~~~~ 165 (548)
.++-.+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 5554443
No 376
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.16 E-value=60 Score=27.95 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=47.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCHHHHHHHHHH
Q 008925 33 TTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSG--CKPTTSTYNTLIKG 108 (548)
Q Consensus 33 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~ 108 (548)
+..+..+.+.+...+++...+.-.+.. |.|......++..++-.|++++|..-++..-+.. ..+....|..++++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344556666777777777777766653 4456667777777888888888877766665431 12234556666554
No 377
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.77 E-value=69 Score=28.77 Aligned_cols=86 Identities=15% Similarity=0.189 Sum_probs=37.5
Q ss_pred HHHHhccCChHHHHHHHHHhhhC-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 008925 106 IKGYGNVGKPEESLKLLQLMSQD-KNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQ-- 182 (548)
Q Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 182 (548)
|.+++..+++.+++...-+..+. ..+||.+.- .-|-.|.+.+.+..+.++-..-+...-..+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIle--LCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILE--LCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 55666666666665544333221 112332222 2222355555555555555554443111222334444443332
Q ss_pred ---cCCHHHHHHHH
Q 008925 183 ---YGETYRAEQML 193 (548)
Q Consensus 183 ---~g~~~~a~~~~ 193 (548)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 35555555443
No 378
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.91 E-value=12 Score=23.80 Aligned_cols=26 Identities=19% Similarity=0.113 Sum_probs=11.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 421 VADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 421 l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
++-++.+.|++++|.++++.+++..|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 33444455555555555555444433
No 379
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.51 E-value=1.3e+02 Score=32.45 Aligned_cols=88 Identities=15% Similarity=-0.023 Sum_probs=47.2
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CChHHHHHH-----HHHHHH--CCCC-------
Q 008925 355 WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA--------KQPWRAEEL-----LQVMEE--KGVR------- 412 (548)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~-----~~~~~~--~~~~------- 412 (548)
|......+-++.+++.+....-.++..-.+.++..|... ++.+++.+. +..+++ ....
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~ 680 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLER 680 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhh
Confidence 444556667777777777654445555556666555431 112223222 111111 1112
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 413 -PKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 413 -p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
|....|...+-.+.+.|+.++|+.++-..+
T Consensus 681 ~~~~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 681 LNGDELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred ccchhHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 224455555666678888888888876654
No 380
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.50 E-value=54 Score=29.40 Aligned_cols=56 Identities=11% Similarity=0.003 Sum_probs=22.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 142 VRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQ 197 (548)
Q Consensus 142 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 197 (548)
|.+++..+++.+++.+.-+--+.--+....+...=|-.|.+.+++..+.++-..-+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44455555555554444333322111122223333334445555544444444433
No 381
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=71.21 E-value=1.3e+02 Score=30.93 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=0.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008925 392 EAKQPWRAEELLQVMEEKGVRPKKSTIQLV 421 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 421 (548)
+.|++.+|.+.+-.+.+.++.|..-....+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp ------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 346666666666666665555554433333
No 382
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.57 E-value=1.4e+02 Score=31.14 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=13.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 008925 176 LARAYAQYGETYRAEQMLFEMQ 197 (548)
Q Consensus 176 l~~~~~~~g~~~~a~~~~~~~~ 197 (548)
|+..|...+++.+|++++-.+.
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 5666666666666666665543
No 383
>PRK10941 hypothetical protein; Provisional
Probab=69.53 E-value=85 Score=28.37 Aligned_cols=61 Identities=11% Similarity=-0.045 Sum_probs=42.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008925 102 YNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS 164 (548)
Q Consensus 102 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 164 (548)
.+.+-.+|.+.++++.|+.+.+.+..- .|.++.-+.--+-.|.+.|.+..|..-++..++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 345666777778888888888777764 2445555666666777788888887777777654
No 384
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.27 E-value=52 Score=25.61 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 398 RAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 398 ~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
.+.++|+.|...|+-.... .|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7889999998877766644 788888899999999999999876
No 385
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.19 E-value=40 Score=25.99 Aligned_cols=45 Identities=11% Similarity=0.226 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQ 127 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 127 (548)
..+.++.+....+.|++......++++.+.+++..|+++|+-+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444455555666666666666666666666666655543
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.05 E-value=38 Score=26.10 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=16.6
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 371 MCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
....++-|++.....-+++|.+.+++..|.++|+-++
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443
No 387
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.49 E-value=35 Score=24.80 Aligned_cols=52 Identities=17% Similarity=0.066 Sum_probs=27.3
Q ss_pred HhcCChHHHHHHHHHHHHCC---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 391 GEAKQPWRAEELLQVMEEKG---VRPK-----KSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~---~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
.+.|++.+|.+.+.+..+.. ..+. ......++......|++++|...++++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34566666655555443211 1111 1223345556666777777777777765
No 388
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=67.89 E-value=82 Score=27.34 Aligned_cols=68 Identities=10% Similarity=-0.020 Sum_probs=39.7
Q ss_pred HHHHHHHHHhccCC-------hHHHHHHHHHHHHcCCCC----C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008925 347 MFTTVISGWCNAVK-------MQRAMSIYEKMCEIGINP----N-LKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK 414 (548)
Q Consensus 347 ~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 414 (548)
.+..+...|...|+ ...|.+.|+++.+..-.| + ....-.++....+.|++++|.+.|.++...+-.+.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 33445555555666 334555555555432111 2 23344556777888999999999999886543333
No 389
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.49 E-value=97 Score=28.08 Aligned_cols=137 Identities=15% Similarity=0.125 Sum_probs=89.1
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh-CC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008925 114 KPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCS-KN-SIEEAWNVVYKMVAS-GIQPDAVTYNTLARAYAQYGETYRAE 190 (548)
Q Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 190 (548)
.+.+|+++|+....+..+-.|......+++.... .+ ....-.++.+-+... +-.++..+....+..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 4556677776432222244566666666665554 22 222222333333322 34678888889999999999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HhCCCCCCHHHHHHHHHHH
Q 008925 191 QMLFEMQNN-QVRPNERTCGIIVSGYCKEGNMEDAMRFLYRM-----KELEVHPNLVVFNSLIKGF 250 (548)
Q Consensus 191 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~~~~l~~~~ 250 (548)
++++..... ++..|...|..++......|+..-...+.++- ...+++.+...-..+-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999987765 66778999999999999999998887776652 3445555555555444443
No 390
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=66.83 E-value=1.7e+02 Score=30.76 Aligned_cols=200 Identities=7% Similarity=-0.008 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINAC---SESGNVDEAMKIFQKMKDSGCKPTTSTYNT 104 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 104 (548)
+...+..|+..+.+.|++++....-.+|.+. .+.++..|..-+.-. ...++..++..+|++.+..- .++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHHH
Confidence 5567888888999999998888777777765 355666665544332 34577888888888887642 34444444
Q ss_pred HHHHHh-------ccCChHHHHHHHHHhhhCCCCCCC--HHHH---HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 008925 105 LIKGYG-------NVGKPEESLKLLQLMSQDKNVKPN--DRTY---NILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVT 172 (548)
Q Consensus 105 l~~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~--~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 172 (548)
.+..+. ..++++....+|.+....-|..-+ ...| .-+-..|...-..++...++..-+..+ .|..+
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~~~ 266 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDEDT 266 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chhhh
Confidence 443332 346778888888887765443322 1222 222234444445566666666655543 23222
Q ss_pred HHHHHHHHHh-------cCCHHHHHHH-------HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 173 YNTLARAYAQ-------YGETYRAEQM-------LFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKE 233 (548)
Q Consensus 173 ~~~l~~~~~~-------~g~~~~a~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 233 (548)
-+.=..-..+ ...++.+.+- ++...+. ..+-...|-.++.-+...|++..-...++++..
T Consensus 267 ~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~ 340 (881)
T KOG0128|consen 267 RGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVA 340 (881)
T ss_pred hHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 2211111111 1122222222 2222221 122334455666666777777666666666654
No 391
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.35 E-value=1.2e+02 Score=28.84 Aligned_cols=94 Identities=11% Similarity=0.002 Sum_probs=59.7
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHC------CCCCCHHHHHHHHH
Q 008925 351 VISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG-EAKQPWRAEELLQVMEEK------GVRPKKSTIQLVAD 423 (548)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~ 423 (548)
.+..+.+.|-+..|.++.+-+...+..-|+.....+++.|+ +.++++--+++.+..... ..-|+.. ..++-
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a--~S~aL 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFA--FSIAL 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHH--HHHHH
Confidence 35566778888888888888888763336666666676654 667777677777665431 0123322 23333
Q ss_pred HHHHcCCH---------------HHHHHHHHHHHhccC
Q 008925 424 SWRAIGLA---------------REAKRVLKSAEEDRQ 446 (548)
Q Consensus 424 ~~~~~g~~---------------~~A~~~~~~~~~~~~ 446 (548)
++...++. ++|...+.++....|
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 44455555 889999988876654
No 392
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.82 E-value=2.3e+02 Score=31.37 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=17.1
Q ss_pred cccccCChhhHHHHHHHHHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIE 22 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~ 22 (548)
+|+..|...+|+..|.++..
T Consensus 929 ~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred eeecCCchHHHHHHHHHHhh
Confidence 47889999999999998865
No 393
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.49 E-value=98 Score=27.06 Aligned_cols=20 Identities=15% Similarity=0.105 Sum_probs=10.1
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 008925 180 YAQYGETYRAEQMLFEMQNN 199 (548)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~ 199 (548)
-...+++.+|.++|+++...
T Consensus 164 aa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443
No 394
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=63.40 E-value=17 Score=34.97 Aligned_cols=103 Identities=10% Similarity=0.083 Sum_probs=59.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccC
Q 008925 282 MDAWSSAGLMGKCQEIFDDMVKAGIEPDIH-VFSILAKGYVRAGEPQKAESILTSMRKYGVHPN-VVMFTTVISGWCNAV 359 (548)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 359 (548)
+......+.++.|..++.++++. .|+.. .|..-..++.+.+++..|+.=+..+++.. |+ ...|..-+.++...+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 33445556677777777777766 34433 33333466677777777776666666643 32 234444445555666
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 360 KMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
.+.+|...|+..... .|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 666777666666653 45555555444444
No 395
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.79 E-value=55 Score=23.60 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=22.3
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008925 17 FNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKD 58 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 58 (548)
++..+..++. |...-..+...+...|+++.|++.+-.+.+.
T Consensus 11 l~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 11 LEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344444332 5555666666666666666666666666554
No 396
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=62.72 E-value=2.4e+02 Score=31.00 Aligned_cols=248 Identities=10% Similarity=0.073 Sum_probs=147.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008925 132 KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGII 211 (548)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 211 (548)
.++...-...+..+.+.+. ..+...+..+++ .++...-...+.++...+........+..++.. +|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 3566666666777777665 445566666664 345555555555555443322222333344432 466666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 008925 212 VSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLM 291 (548)
Q Consensus 212 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 291 (548)
+..+...+..+ .. .+-++.+ .+|...-...+.++...+..+. +..+.. .++...-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 66665443211 12 2333333 4666666667777766554332 222222 34666666677777777654
Q ss_pred hH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 008925 292 GK-CQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEK 370 (548)
Q Consensus 292 ~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 370 (548)
+. +...+..+.+ .+|..+-...+.++...|..+.+...+..+++ .++...-...+.++...+. +++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 43 3455555543 46788888889999999987666555666664 3566666667777777765 567777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 371 MCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
+++ .|+...-...+.++.+.+....+...+..+.+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 775 56777777777888776444567777777765
No 397
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=62.66 E-value=1.2e+02 Score=27.62 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHH
Q 008925 220 NMEDAMRFLYRMKELEVHPNLVVFN 244 (548)
Q Consensus 220 ~~~~A~~~~~~~~~~~~~~~~~~~~ 244 (548)
+...|...+......+.........
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6666677776666655444444443
No 398
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.08 E-value=61 Score=23.87 Aligned_cols=16 Identities=19% Similarity=0.191 Sum_probs=7.0
Q ss_pred HHHcCCHhHHHHHHHH
Q 008925 320 YVRAGEPQKAESILTS 335 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~ 335 (548)
+...|++++|..+.+.
T Consensus 49 LmNrG~Yq~Al~l~~~ 64 (115)
T TIGR02508 49 LMNRGDYQSALQLGNK 64 (115)
T ss_pred HHccchHHHHHHhcCC
Confidence 3444444444444433
No 399
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=61.67 E-value=74 Score=24.70 Aligned_cols=44 Identities=25% Similarity=0.236 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 397 WRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 397 ~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
++..++|+.|...++-...+ .|...+..+-..|++.+|.++++.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 33677888888888766655 677888888899999999988863
No 400
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=61.52 E-value=19 Score=34.75 Aligned_cols=98 Identities=16% Similarity=0.092 Sum_probs=49.9
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTL-ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
++..+.++.|+.++.++++.. ||- ..|..-..++.+.+++..|+.=+.++++.. +-....|..-..++.+.+.+.+
T Consensus 14 ~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHH
Confidence 345556666666666666643 322 223333355566666666666666555542 1122233333444555555666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLI 106 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~ 106 (548)
|+..|+..... .|+..-....+
T Consensus 91 A~~~l~~~~~l--~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 91 ALLDLEKVKKL--APNDPDATRKI 112 (476)
T ss_pred HHHHHHHhhhc--CcCcHHHHHHH
Confidence 66666655543 44444444333
No 401
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.49 E-value=1.6e+02 Score=28.39 Aligned_cols=19 Identities=11% Similarity=0.253 Sum_probs=10.2
Q ss_pred HhCCChhHHHHHHHHHHHc
Q 008925 286 SSAGLMGKCQEIFDDMVKA 304 (548)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~ 304 (548)
.+.+++..|.+++..+...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR 160 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh
Confidence 3455555555555555544
No 402
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.31 E-value=53 Score=27.85 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 412 RPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 412 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
.|++..+..++.++...|+.++|.+..+++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45666666666666666666666666665544433
No 403
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.05 E-value=56 Score=23.72 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=7.3
Q ss_pred HhccCChHHHHHHHHHh
Q 008925 109 YGNVGKPEESLKLLQLM 125 (548)
Q Consensus 109 ~~~~g~~~~A~~~~~~~ 125 (548)
....|++++|...+++.
T Consensus 51 ~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 33344444444444443
No 404
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.68 E-value=1.6e+02 Score=28.18 Aligned_cols=190 Identities=12% Similarity=0.060 Sum_probs=111.0
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 008925 17 FNCLIEEGHRPTL-ITYTTLVAALTRQKRFKSILSLISKVEKD--GMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS 93 (548)
Q Consensus 17 ~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (548)
++.....+++-++ ..+.-++..|...|+++.|++.|.+.... ..+.....|..+|..-...|+|........+..+.
T Consensus 137 Lk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 137 LKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 3333334444333 57888999999999999999999886542 11223557778888888888888777777766554
Q ss_pred ---------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCC-----CCCCHHHHHHHHHHHHhCCCHHHHH----
Q 008925 94 ---------GCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKN-----VKPNDRTYNILVRAWCSKNSIEEAW---- 155 (548)
Q Consensus 94 ---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~---- 155 (548)
.+++...++..+.....+ ++..|.+.|-....... +.|...+....+.+....++-+--+
T Consensus 217 ~~~~~~~~q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~ 294 (466)
T KOG0686|consen 217 PDANENLAQEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIK 294 (466)
T ss_pred chhhhhHHHhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHc
Confidence 234456666666665544 77777776655433211 2233333333333443333322222
Q ss_pred -HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHH
Q 008925 156 -NVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNN-----QVRPNERTCGIIVSG 214 (548)
Q Consensus 156 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~ 214 (548)
..|+.+.+. .+.....+...| .+++...+++++++... -+.|...++..+|..
T Consensus 295 n~~Fk~flel----~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~ 353 (466)
T KOG0686|consen 295 NESFKLFLEL----EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRN 353 (466)
T ss_pred chhhhhHHhc----ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHH
Confidence 223333332 344444455444 35688888888887654 345667776666643
No 405
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.28 E-value=2.2e+02 Score=29.79 Aligned_cols=167 Identities=10% Similarity=0.160 Sum_probs=98.0
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 008925 37 AALTRQKRFKSILSLISKVEKDGMKP---DSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVG 113 (548)
Q Consensus 37 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (548)
.-+.+.+.+++|+++.+..... .| -.......+..+...|++++|-...-.|... +..-|..-+..+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 3455677888888877765432 33 2346778888889999999999998888753 6677777777777777
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008925 114 KPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQML 193 (548)
Q Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 193 (548)
+......+ ++... ...+...|..++..+.. .+ ..-|.+.++. -+...|..+.-.-+..-+ +
T Consensus 438 ~l~~Ia~~---lPt~~-~rL~p~vYemvLve~L~-~~----~~~F~e~i~~---Wp~~Lys~l~iisa~~~q-------~ 498 (846)
T KOG2066|consen 438 QLTDIAPY---LPTGP-PRLKPLVYEMVLVEFLA-SD----VKGFLELIKE---WPGHLYSVLTIISATEPQ-------I 498 (846)
T ss_pred ccchhhcc---CCCCC-cccCchHHHHHHHHHHH-HH----HHHHHHHHHh---CChhhhhhhHHHhhcchH-------H
Confidence 66544332 23221 12345667777776665 22 2233333332 123333333211111111 1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 194 FEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKE 233 (548)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 233 (548)
++- .. +......|+..|...+++..|..++-...+
T Consensus 499 ~q~----Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 499 KQN----SE-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred Hhh----cc-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 111 11 223334488899999999999998877654
No 406
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.26 E-value=2.2e+02 Score=29.71 Aligned_cols=120 Identities=16% Similarity=0.229 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhCCChhHH
Q 008925 225 MRFLYRMKELEVHPN---LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDV-------VTFSTIMDAWSSAGLMGKC 294 (548)
Q Consensus 225 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a 294 (548)
-.++.+|...--.|+ ..+...++-.|....+++..+++.+.+....-..+. ..|...+.--.+-|+-++|
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 344555554322333 245555666666677777777777666653100000 0121122222244666677
Q ss_pred HHHHHHHHHcC--CCCCHHH-----HHH--HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH
Q 008925 295 QEIFDDMVKAG--IEPDIHV-----FSI--LAKGYVRAGEPQKAESILTSMRKYGVHPNVV 346 (548)
Q Consensus 295 ~~~~~~~~~~~--~~~~~~~-----~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 346 (548)
+...-.+++.. +.||... |.- +...|...+..+.|.+.|++..+ +.|+..
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~ 321 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEY 321 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhh
Confidence 76666666432 2233321 110 01122233445566666666655 345443
No 407
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=60.03 E-value=1.5e+02 Score=27.58 Aligned_cols=115 Identities=11% Similarity=0.085 Sum_probs=68.0
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh------ccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHH
Q 008925 326 PQKAESILTSMRKYGVHPNVVMFTTVISGWC------NAVKMQRAMSIYEKMCEIGINPNLK-TYETLLWGYGEAKQPWR 398 (548)
Q Consensus 326 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 398 (548)
++++..++++...++. |.+......|.++. ..-+|.....+|+-+.... |+++ +.|- ..+.....-++.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a--pSPvV~LNR-AVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA--PSPVVTLNR-AVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC--CCCeEeehH-HHHHHHhhhHHh
Confidence 5667777777776653 66766666665553 2345667777777766653 4443 3332 233444444566
Q ss_pred HHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008925 399 AEELLQVMEEKGVRPKKST-IQLVADSWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 399 A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (548)
++...+-+...+--.+... +..-++.+.+.|+.++|...|+++...
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 7777766665422222222 333467788888888888888887643
No 408
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.82 E-value=24 Score=31.93 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=14.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCC
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIGI 376 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 376 (548)
+..|....+.||+++|+++++++.+.|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4455555555555555555555555543
No 409
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.61 E-value=72 Score=23.86 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 008925 291 MGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEK 370 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 370 (548)
.++|..+.+.+...+ .....+-..-+..+.+.|++++| +..-... ..||...|..|.. .+.|-.+++...+.+
T Consensus 22 H~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 22 HQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 444555555444433 11122222233344555555555 1111111 2344444443332 234444455444444
Q ss_pred HHHc
Q 008925 371 MCEI 374 (548)
Q Consensus 371 ~~~~ 374 (548)
+...
T Consensus 95 la~~ 98 (116)
T PF09477_consen 95 LASS 98 (116)
T ss_dssp HCT-
T ss_pred HHhC
Confidence 4433
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.45 E-value=1.7e+02 Score=28.15 Aligned_cols=56 Identities=7% Similarity=0.190 Sum_probs=34.2
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCChHHHHHHHHHHHhc
Q 008925 37 AALTRQKRFKSILSLISKVEKDGMKPDSI--LFNAMINACS--ESGNVDEAMKIFQKMKDS 93 (548)
Q Consensus 37 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 93 (548)
..+...++|..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444677777777777777765 444443 4444545554 345667777777776543
No 411
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.42 E-value=68 Score=26.75 Aligned_cols=23 Identities=17% Similarity=0.537 Sum_probs=15.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 008925 70 MINACSESGNVDEAMKIFQKMKD 92 (548)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~ 92 (548)
.+..|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34567777777777777777765
No 412
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.81 E-value=44 Score=21.20 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=16.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 008925 385 TLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS 416 (548)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 416 (548)
.+.-++.+.|++++|.++.+.+++. .|+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~ 35 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNR 35 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-H
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcH
Confidence 3445566666666666666666652 45543
No 413
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.10 E-value=82 Score=26.29 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=21.4
Q ss_pred HHHHHHhccCChHHHHHHHHHhhhC
Q 008925 104 TLIKGYGNVGKPEESLKLLQLMSQD 128 (548)
Q Consensus 104 ~l~~~~~~~g~~~~A~~~~~~~~~~ 128 (548)
..+..|.+.|.+++|.+++++...+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcC
Confidence 4556789999999999999999774
No 414
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.31 E-value=82 Score=25.28 Aligned_cols=60 Identities=13% Similarity=0.224 Sum_probs=33.3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 008925 53 SKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVG 113 (548)
Q Consensus 53 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (548)
+.+.+.|..++.. ...++..+...++.-.|.++++++.+.+...+..|.-..+..+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444555554432 34455666666666677777777776655555555444445555544
No 415
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.99 E-value=2.6e+02 Score=29.24 Aligned_cols=319 Identities=9% Similarity=0.002 Sum_probs=163.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 008925 66 LFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAW 145 (548)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (548)
.-..-+..+.+.+++...+..+.. .+.+...-.....+....|+.++|....+.+=..+ ...+..+..++..+
T Consensus 101 Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g--~~~p~~cd~l~~~~ 173 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG--KSLPNACDKLFSVW 173 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCChHHHHHHHHH
Confidence 334444555666777766662211 13455555667777778888777776666654332 23345666777777
Q ss_pred HhCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008925 146 CSKNSIE--EAWNVVYKMVASGIQPDAVTYNTLARAYA------------QYGETYRAEQMLFEMQNNQVRPNERTCGII 211 (548)
Q Consensus 146 ~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 211 (548)
.+.|.+. ...+-++.+...| +...-..|..... -..+...+..++.. +.++...-..+
T Consensus 174 ~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~ 245 (644)
T PRK11619 174 QQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMA 245 (644)
T ss_pred HHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHH
Confidence 7655432 2333333333333 2111111221110 00111111111111 11222111111
Q ss_pred HHHH--HhcCCHHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 212 VSGY--CKEGNMEDAMRFLYRMKELE-VHPNL--VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWS 286 (548)
Q Consensus 212 ~~~~--~~~g~~~~A~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 286 (548)
+.++ ....+.+.|...+....... ..+.. ..+..+.......+....+...+....... .+......-+....
T Consensus 246 ~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al 323 (644)
T PRK11619 246 AVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMAL 323 (644)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHH
Confidence 1111 23456688888888764432 11111 233344333333322344544444433221 23334444455555
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC------------CCC--------CCH-
Q 008925 287 SAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKY------------GVH--------PNV- 345 (548)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~~~--------p~~- 345 (548)
..++++.+...+..|.... .....-..-+++++...|+.++|...|+.+... |.+ |..
T Consensus 324 ~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~ 402 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPD 402 (644)
T ss_pred HccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchh
Confidence 7888888888887775432 234445566777777788888888888877421 211 000
Q ss_pred H-----HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008925 346 V-----MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQV 405 (548)
Q Consensus 346 ~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (548)
. .-..-+..+...|....|...+..+... .+......+.......|.++.++.....
T Consensus 403 ~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 403 SALTQGPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred hhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 0 0111233455678888999888888773 3555666677777788888888776654
No 416
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.34 E-value=1.5e+02 Score=26.20 Aligned_cols=97 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred ccccccCChhhHHHHHHHHHH------CCCCC-----------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 008925 2 NILVGKGKPHEAHYIFNCLIE------EGHRP-----------TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDS 64 (548)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~------~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 64 (548)
|-+.+.|++.+|...|++++- ..-+| ..-.+.....++...|++-++++.-.+++.. .+.++
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~-~~~nv 264 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH-HPGNV 264 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc-CCchH
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH
Q 008925 65 ILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTST 101 (548)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 101 (548)
..|-.-..+.+..-+.++|..-|...++. .|....
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~l--dpslas 299 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLEL--DPSLAS 299 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhc--ChhhHH
No 417
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.63 E-value=1.8e+02 Score=26.92 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HH
Q 008925 136 RTYNILVRAWCSKNSIEEAWNVVYKMVA----SGIQPDAVTYNT-LARAYAQYGETYRAEQMLFEMQNNQVRPN----ER 206 (548)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~ 206 (548)
..+......||+.||.+.|++.+.+..+ .|...|...+.. ++-.|....-..+-++..+.+.+.|...+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4566677788899998888888776544 455556554432 22333333334444555555555554322 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 207 TCGIIVSGYCKEGNMEDAMRFLYRMKE 233 (548)
Q Consensus 207 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 233 (548)
+|..+ -+....++.+|-.+|-+...
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 23222 22344677788777776654
No 418
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=54.10 E-value=1.9e+02 Score=32.34 Aligned_cols=159 Identities=12% Similarity=0.018 Sum_probs=94.8
Q ss_pred HHHhCCChhHHHH------HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH-------hCCCCCCHHHHHH
Q 008925 284 AWSSAGLMGKCQE------IFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMR-------KYGVHPNVVMFTT 350 (548)
Q Consensus 284 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~p~~~~~~~ 350 (548)
.....|.+.+|.+ ++......-.++....|..|...+.+.|+.++|+..-.... ..+..-+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444555665555 55533332224556678888888899999998887765542 1111123345655
Q ss_pred HHHHHhccCChHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CC---CCHH
Q 008925 351 VISGWCNAVKMQRAMSIYEKMCEI-----G--INPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG----VR---PKKS 416 (548)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~---p~~~ 416 (548)
+...+...++...|...+.++... | .||...++..+-..+...++++.|+++++.+.... .+ ++..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 555555666778888887777652 1 23334445555555555688889999998886421 11 2234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 417 TIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
++..++......+++..|....+...
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 55566666666677766666655544
No 419
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=53.93 E-value=79 Score=22.60 Aligned_cols=65 Identities=12% Similarity=0.173 Sum_probs=32.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHH
Q 008925 48 ILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEES 118 (548)
Q Consensus 48 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 118 (548)
+.+++..+.+.|+- +......+-.+-...|+.+.|.+++..+. .| | ..|..++.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhh
Confidence 34555555555522 22223332222234566666666666666 42 2 2455566666665554443
No 420
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.81 E-value=68 Score=27.22 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 167 QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNN 199 (548)
Q Consensus 167 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 199 (548)
.|+..+|..++..+...|+.++|.+...++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555555555555555555555555555443
No 421
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=53.60 E-value=1.9e+02 Score=26.91 Aligned_cols=78 Identities=15% Similarity=0.285 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc---CCCCCHHHH--HHHHHHHHHcCCHhHHHHHHHHHHh-----CCCCCCHH-H
Q 008925 279 STIMDAWSSAGLMGKCQEIFDDMVKA---GIEPDIHVF--SILAKGYVRAGEPQKAESILTSMRK-----YGVHPNVV-M 347 (548)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~-~ 347 (548)
..++....+.++.++|+++++++.+. .-.|+...| ...+.++...|+.+++.+.+++..+ .+++|++. .
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34445566777899999998888742 124566655 4556677788999999999888876 56766554 4
Q ss_pred HHHHHHHHh
Q 008925 348 FTTVISGWC 356 (548)
Q Consensus 348 ~~~l~~~~~ 356 (548)
|..+..-|.
T Consensus 159 fY~lssqYy 167 (380)
T KOG2908|consen 159 FYSLSSQYY 167 (380)
T ss_pred HHHHHHHHH
Confidence 555554443
No 422
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.31 E-value=41 Score=22.17 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=8.7
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 008925 386 LLWGYGEAKQPWRAEELLQVM 406 (548)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~ 406 (548)
++.+|...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 423
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=53.20 E-value=1.6e+02 Score=26.00 Aligned_cols=46 Identities=20% Similarity=0.073 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHH---CCCCCCHHHHHHHH-----HHHHHcCCHHHHHHHHHHHH
Q 008925 397 WRAEELLQVMEE---KGVRPKKSTIQLVA-----DSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 397 ~~A~~~~~~~~~---~~~~p~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~ 442 (548)
++|.+.|+++.+ ..++|..++.-.++ -.|-..|+.++|.++.+++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 556666666542 22567766544333 22345799999999988864
No 424
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.09 E-value=36 Score=22.43 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=8.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHH
Q 008925 141 LVRAWCSKNSIEEAWNVVYKM 161 (548)
Q Consensus 141 l~~~~~~~g~~~~a~~~~~~~ 161 (548)
++.++...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333444444444444444333
No 425
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=52.83 E-value=1.9e+02 Score=26.54 Aligned_cols=70 Identities=13% Similarity=0.257 Sum_probs=38.4
Q ss_pred HhCCChhHHHHHHH-HHHHcCCCCCHH----HHHHHHHHHHHcCCHhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 008925 286 SSAGLMGKCQEIFD-DMVKAGIEPDIH----VFSILAKGYVRAGEPQKAES-ILTSMRKYGVHPNVVMFTTVISGWCNAV 359 (548)
Q Consensus 286 ~~~~~~~~a~~~~~-~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g 359 (548)
.+...+++.....+ +|.+.+ -|++. +|..++.+- .|.+-.+ +-+++++ ....|..|+.+++..|
T Consensus 266 s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsav----eWnKkeelva~qalr-----hlK~yaPLL~af~s~g 335 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAV----EWNKKEELVAEQALR-----HLKQYAPLLAAFCSQG 335 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHH----hhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCC
Confidence 34445555555444 455555 45544 455555543 3333222 2233333 3457888999999999
Q ss_pred ChHHHH
Q 008925 360 KMQRAM 365 (548)
Q Consensus 360 ~~~~A~ 365 (548)
+.+-.+
T Consensus 336 ~sEL~L 341 (412)
T KOG2297|consen 336 QSELEL 341 (412)
T ss_pred hHHHHH
Confidence 876544
No 426
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.54 E-value=16 Score=28.36 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008925 45 FKSILSLISKVEKDGMKPDSILFNAMIN 72 (548)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 72 (548)
-..|-.+|++|+..|-+||. |+.|+.
T Consensus 111 k~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 111 KTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred CCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34455555555555555553 444443
No 427
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.47 E-value=86 Score=27.95 Aligned_cols=79 Identities=9% Similarity=0.067 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 008925 116 EESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVA----SG-IQPDAVTYNTLARAYAQYGETYRAE 190 (548)
Q Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~a~ 190 (548)
+.|...|...... .-.......+...|...|++++|.++|+.+.. .| ..+...+...+..++...|+.+...
T Consensus 162 ~~A~~~f~~~~~~---R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 162 EKAYEQFKKYGQN---RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHhccc---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3455555544321 22233444667788888888888888888743 22 2345566777888888888888877
Q ss_pred HHHHHHH
Q 008925 191 QMLFEMQ 197 (548)
Q Consensus 191 ~~~~~~~ 197 (548)
.+.-++.
T Consensus 239 ~~~leLl 245 (247)
T PF11817_consen 239 TTSLELL 245 (247)
T ss_pred HHHHHHh
Confidence 7655543
No 428
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=49.42 E-value=1.4e+02 Score=24.00 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhccCC-hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 008925 99 TSTYNTLIKGYGNVGK-PEESLKLLQLMSQDKNVKPNDRTYNILVRAWCS 147 (548)
Q Consensus 99 ~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (548)
...|..++.+..+..- ---+..+|..+.+ .+.+.+...|..++.++.+
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHc
Confidence 3445555555544333 2223444444443 2345555555555555443
No 429
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.34 E-value=2e+02 Score=26.00 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=52.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH----HcCCCCCHHHHHHH-HHHHHHcCCHhHHHHHHHHHHhC----CCCCCHHHHHH
Q 008925 280 TIMDAWSSAGLMGKCQEIFDDMV----KAGIEPDIHVFSIL-AKGYVRAGEPQKAESILTSMRKY----GVHPNVVMFTT 350 (548)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~ 350 (548)
-++..+.+.|.+.+|+.+...+. +.+-+++..+...+ -.+|....+..++..-+..++.. -++|-...-.-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 46667788888888887665544 33324443322222 24555666666665555544321 13444443334
Q ss_pred HHHH--HhccCChHHHHHHHHHHHH
Q 008925 351 VISG--WCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 351 l~~~--~~~~g~~~~A~~~~~~~~~ 373 (548)
++.+ .|...++..|..+|-++.+
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHh
Confidence 4443 2455678888888887776
No 430
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=48.48 E-value=3.1e+02 Score=27.88 Aligned_cols=141 Identities=13% Similarity=0.172 Sum_probs=72.3
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCC
Q 008925 38 ALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACS--ESGNVDEAMKIFQKMKDSGCKPTT-STYNTLIKGYGNVGK 114 (548)
Q Consensus 38 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 114 (548)
.+...|++++|+..+++....+ +.+..+..-...+- .......-..+|++..+.+ |+- .+...++..+. .
T Consensus 318 lLl~~~~l~eal~~~e~~c~~~--~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~--P~~~~~le~l~~~~~---~ 390 (547)
T PF14929_consen 318 LLLIGGRLKEALNELEKFCISS--TCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKD--PTMSYSLERLILLHQ---K 390 (547)
T ss_pred EEeccccHHHHHHHHHHhccCC--CccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCC--CcHHHHHHHHHhhhh---h
Confidence 3345578888887777765442 22222222222222 2335666677777777653 332 22222333222 2
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh-----C---CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCC
Q 008925 115 PEESLKLLQLMSQDKNVKPNDRTYNILVRAWCS-----K---NSIEEAWNVVYKMVASG-IQPDAVTYNTLARAYAQYGE 185 (548)
Q Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~---g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 185 (548)
...+.++++-+.-.-...|...+|.-+...+.+ . .+...+.+++-.+++.+ ...+..+|..+....-+...
T Consensus 391 ~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~~ 470 (547)
T PF14929_consen 391 DYSAEQLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIFD 470 (547)
T ss_pred HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhhh
Confidence 455666666442222234777778777777776 2 23445655555555432 33455666666554443333
No 431
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=48.30 E-value=42 Score=17.76 Aligned_cols=8 Identities=25% Similarity=0.314 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 008925 13 AHYIFNCL 20 (548)
Q Consensus 13 A~~~~~~~ 20 (548)
|..+|+.+
T Consensus 6 ~r~i~e~~ 13 (33)
T smart00386 6 ARKIYERA 13 (33)
T ss_pred HHHHHHHH
Confidence 33333333
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=48.09 E-value=1.1e+02 Score=27.38 Aligned_cols=19 Identities=0% Similarity=-0.135 Sum_probs=11.1
Q ss_pred HHHHHccCCHHHHHHHHHH
Q 008925 36 VAALTRQKRFKSILSLISK 54 (548)
Q Consensus 36 ~~~~~~~g~~~~a~~~~~~ 54 (548)
++.+...|+...|+.-|+.
T Consensus 17 ~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 17 CRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 4555666666666655544
No 433
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.47 E-value=21 Score=27.80 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=15.1
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 323 AGEPQKAESILTSMRKYGVHPNVVMFTTVIS 353 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 353 (548)
.|.-..|-.+|+.|++.|-+||. |+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34444555666666666555543 444443
No 434
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=47.18 E-value=1.6e+02 Score=27.30 Aligned_cols=95 Identities=15% Similarity=0.038 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGV-HP--NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLW 388 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (548)
.|--=+.-|.+.+++..|...|.+-++... .| +.+.|+.-..+-...|++..|+.--.+++... |-....|..=..
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAK 161 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhH
Confidence 455566677888888888888877665321 22 34566666666666778888877777777653 333455555556
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 008925 389 GYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~ 407 (548)
++....++.+|....++..
T Consensus 162 c~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 6666677777777666554
No 435
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.48 E-value=69 Score=19.76 Aligned_cols=31 Identities=10% Similarity=0.386 Sum_probs=15.7
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 008925 76 ESGNVDEAMKIFQKMKDSGCKPTTSTYNTLI 106 (548)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 106 (548)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444455555555555555555554444433
No 436
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.44 E-value=3.3e+02 Score=27.57 Aligned_cols=93 Identities=13% Similarity=-0.013 Sum_probs=48.8
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcC
Q 008925 354 GWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG-EAKQPWRAEELLQVMEEK---GVRPKKSTIQLVADSWRAIG 429 (548)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g 429 (548)
.+.+.|-+..|.++-+-+......-|+.....+++.|+ +..+++=.+++++..... ...|+...-..++..|.+..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~ 430 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKN 430 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcC
Confidence 34456666666666666665542225555555555543 455555555555555321 12355444444555555444
Q ss_pred C---HHHHHHHHHHHHhccC
Q 008925 430 L---AREAKRVLKSAEEDRQ 446 (548)
Q Consensus 430 ~---~~~A~~~~~~~~~~~~ 446 (548)
. -..|...+.+++.+.|
T Consensus 431 ~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 431 EEDDRQSALNALLQALKHHP 450 (665)
T ss_pred ChhhHHHHHHHHHHHHHhCc
Confidence 3 4556666666665554
No 437
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.96 E-value=4.3e+02 Score=28.73 Aligned_cols=116 Identities=13% Similarity=0.109 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--C-CCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHHHHH--
Q 008925 137 TYNILVRAWCSKNSIEEAWNVVYKMVASGI--Q-PDAVTYNTLARAYAQYGET--YRAEQMLFEMQNNQVRPNERTCG-- 209 (548)
Q Consensus 137 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~-- 209 (548)
-|..|+..|...|+.++|++++.+..+..- . .-...+..+++.....+.. +-.+++-+...+.........+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 378899999999999999999999877320 0 0112233355555555544 44444444444332111111111
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 008925 210 ----------IIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLD 252 (548)
Q Consensus 210 ----------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (548)
..+-.|......+-++.+++.+....-.++....+.++..|..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1233456667788888888888776656677777777777654
No 438
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.84 E-value=2.3e+02 Score=25.55 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008925 203 PNERTCGIIVSGYCKEGNMEDAMRFLY 229 (548)
Q Consensus 203 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 229 (548)
-++.....+...|.+.|++.+|...|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 356677777788888888888776663
No 439
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.74 E-value=1.4e+02 Score=23.18 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008925 153 EAWNVVYKMVASGIQPD-AVTYNTLARAYAQYGETYRAEQMLFE 195 (548)
Q Consensus 153 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 195 (548)
.+.++|..|...|+-.. +.-|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55556666655544332 34455555555556666666655543
No 440
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.60 E-value=77 Score=29.26 Aligned_cols=98 Identities=14% Similarity=0.069 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 008925 29 LITYTTLVAALTRQKRFKSILSLISKVEKDGM-K--PDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTL 105 (548)
Q Consensus 29 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 105 (548)
...|.-=+.-|.+..++..|...|.+-++... . .+.+.|+.-..+-...|++..|+.=....+... +.....|-.=
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhh
Confidence 35667778889999999999999988776532 2 235677777777778889999988888887753 2234555555
Q ss_pred HHHHhccCChHHHHHHHHHhhh
Q 008925 106 IKGYGNVGKPEESLKLLQLMSQ 127 (548)
Q Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~ 127 (548)
..++....++.+|....++...
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhh
Confidence 6667777777777777766644
No 441
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=45.40 E-value=3.2e+02 Score=30.65 Aligned_cols=127 Identities=15% Similarity=0.077 Sum_probs=55.3
Q ss_pred HHHHccCCHHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hcCCCCCHHHHH
Q 008925 37 AALTRQKRFKSILS------LISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMK-------DSGCKPTTSTYN 103 (548)
Q Consensus 37 ~~~~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~ 103 (548)
......|.+.++.+ +++.....-.++....|..|...+-+.|+.++|+..-.+.. ....+-+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 33444455555554 44432222113334456666666667777776666544331 111111223344
Q ss_pred HHHHHHhccCChHHHHHHHHHhhhCC------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008925 104 TLIKGYGNVGKPEESLKLLQLMSQDK------NVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVA 163 (548)
Q Consensus 104 ~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 163 (548)
.+.......+....|...+.+..... .-||...+++.+-..+...++.+.|+++++.+.+
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44444444445555554444433211 1122233333333333344555555555555443
No 442
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.17 E-value=1.3e+02 Score=22.62 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 172 TYNTLARAYAQYGETYRAEQMLFEMQN 198 (548)
Q Consensus 172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 198 (548)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 356666777777777777777776655
No 443
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=44.93 E-value=3.3e+02 Score=27.08 Aligned_cols=379 Identities=10% Similarity=0.019 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHh
Q 008925 47 SILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGK-PEESLKLLQLM 125 (548)
Q Consensus 47 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~ 125 (548)
+...+|+....+ ++.|+..|...+..+.+.+.+.+...+|.+|+... +.++..|-.........+. ++.|..+|.+.
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 445666666555 56688899999988888888999999999998752 3355566555554444443 88888888887
Q ss_pred hhCCCCCCCHHHHHHHHHHHH----h-----------CCCH-HHHHHHHHHHHHCCCCCCHH--HHHHH---HHHHHhcC
Q 008925 126 SQDKNVKPNDRTYNILVRAWC----S-----------KNSI-EEAWNVVYKMVASGIQPDAV--TYNTL---ARAYAQYG 184 (548)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~----~-----------~g~~-~~a~~~~~~~~~~~~~~~~~--~~~~l---~~~~~~~g 184 (548)
.+.. +.++..|....+.-. + .++. ++-.+. +..- ....++.. .+..- ........
T Consensus 167 LR~n--pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~g-e~~~-~~~~~s~~~~~~~~k~~e~~~~~~~d 242 (568)
T KOG2396|consen 167 LRFN--PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERG-ELAW-INYANSVDIIKGAVKSVELSVAEKFD 242 (568)
T ss_pred hhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH-HHHH-HhhccchhhhhcchhhcchHHHHHHH
Confidence 7753 223333332222110 0 0011 000000 0000 00011111 11000 00000000
Q ss_pred CHHHH-HHHHHHHHhCCCCCCHHHHHHHHHH----HHh---------------cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008925 185 ETYRA-EQMLFEMQNNQVRPNERTCGIIVSG----YCK---------------EGNMEDAMRFLYRMKELEVHPNLVVFN 244 (548)
Q Consensus 185 ~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~----~~~---------------~g~~~~A~~~~~~~~~~~~~~~~~~~~ 244 (548)
...+. ..+.+.+... .+.++.++..+..- +.+ .-+-+....+|+.... ..++...|+
T Consensus 243 ~~kel~k~i~d~~~~~-~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~--~l~t~sm~e 319 (568)
T KOG2396|consen 243 FLKELQKNIIDDLQSK-APDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVK--TLPTESMWE 319 (568)
T ss_pred HHHHHHHHHHHHHhcc-CCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHH--HhhHHHHHH
Confidence 01111 1122222222 22244443333221 111 1122334456666655 245556666
Q ss_pred HHHHHHHcCCC------hhhHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 008925 245 SLIKGFLDIKD------SDGVDKALTLMEEF-GVKPD-VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSIL 316 (548)
Q Consensus 245 ~l~~~~~~~~~------~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (548)
..|..|...-. ......+++...+. +..++ ...|..+...+..... +...-..+...++..+...|..-
T Consensus 320 ~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~---~r~~a~~l~~e~f~~s~k~~~~k 396 (568)
T KOG2396|consen 320 CYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNE---AREVAVKLTTELFRDSGKMWQLK 396 (568)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccch---HhHHHHHhhHHHhcchHHHHHHH
Confidence 66666543322 22233334433332 22222 3344444444443332 22233333333335566666555
Q ss_pred HHHHHHc-CCHhH-HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-hHH--HHHHHHHHHHcCCCCCHHHH-HHHHHHH
Q 008925 317 AKGYVRA-GEPQK-AESILTSMRKYGVHPNVVMFTTVISGWCNAVK-MQR--AMSIYEKMCEIGINPNLKTY-ETLLWGY 390 (548)
Q Consensus 317 ~~~~~~~-g~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~--A~~~~~~~~~~~~~~~~~~~-~~l~~~~ 390 (548)
+...... .+++- -...|......-..+....|++.. .|+ ... -..++......+ .|+..++ +.+++.+
T Consensus 397 l~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~l~~~ 470 (568)
T KOG2396|consen 397 LQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTLKSKYLDWA 470 (568)
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeehhHHHHHHH
Confidence 5544422 12221 122233333321122233343333 222 111 122233333333 5666555 4567778
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHhcc
Q 008925 391 GEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSW---RAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~ 445 (548)
.+.|-+.+|...+..+...+ +|+...+..++..- ..+| ..-++++++.|....
T Consensus 471 ~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 471 YESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREF 526 (568)
T ss_pred HHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHh
Confidence 88899999999999998763 56777777776543 2334 777888888877443
No 444
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=44.68 E-value=59 Score=28.23 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=27.9
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKD 58 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 58 (548)
+.+.|+.+.|.+++.+++..-+. ....|..+...-.+.|+++.|.+.+++..+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34455555555555555543221 3345555555555555555555555555543
No 445
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.08 E-value=49 Score=30.07 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=14.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 008925 33 TTLVAALTRQKRFKSILSLISKVEKDGMK 61 (548)
Q Consensus 33 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 61 (548)
+..|....+.||+++|+.++++..+.|..
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34455555555555555555555555433
No 446
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=43.99 E-value=1.6e+02 Score=23.28 Aligned_cols=68 Identities=7% Similarity=0.046 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHhccC---ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008925 97 PTTSTYNTLIKGYGNVG---KPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS 164 (548)
Q Consensus 97 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 164 (548)
++..+-..+..++.++. +..+.+.+++.+.+.......-.....|.-++.+.++++.++++.+.+++.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 33444444444454443 334445555555431101111122333344455566666666666555554
No 447
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=43.47 E-value=60 Score=21.70 Aligned_cols=48 Identities=6% Similarity=0.093 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 344 NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 344 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
....++.++..++...-.++++.++.++...| ..+..+|..-++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555 3344444444444433
No 448
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.99 E-value=2.5e+02 Score=25.26 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHH
Q 008925 309 DIHVFSILAKGYVRAGEPQKAESIL 333 (548)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~ 333 (548)
|+.....++..|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4555666666677777666665444
No 449
>COG3825 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.90 E-value=1.5e+02 Score=27.07 Aligned_cols=55 Identities=9% Similarity=0.162 Sum_probs=29.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008925 367 IYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVA 422 (548)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 422 (548)
+|.++....++.+...|..|+.++-+. -.+--++.|..+.+.-+.||...+..+.
T Consensus 5 ff~~lr~A~vpvs~re~llL~egl~~~-v~~~~ld~Fy~LaraaLvkde~~ldkfd 59 (393)
T COG3825 5 FFNELRAARVPVSVREYLLLLEGLKQT-VVEYDLDLFYYLARAALVKDERHLDKFD 59 (393)
T ss_pred HHhHhhhcccccccchHHHHHHHHhhh-hhhhhhHHHHHHHHHhcCccHHHHHHHH
Confidence 455566666666666666666665432 1122244455444444566666555443
No 450
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=42.19 E-value=1.8e+02 Score=23.38 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=43.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008925 16 IFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESG 78 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 78 (548)
+-..+.+.|.+++.. -..++..+.+.++.-.|.++++.+.+.+..-+..|-..-+..+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334455567665553 35677788888888999999999999876666665555566666665
No 451
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=41.76 E-value=1.6e+02 Score=22.65 Aligned_cols=62 Identities=11% Similarity=-0.012 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCCHH-HHHH----HHHHHHHcCCHHHHHHHHHHHH
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEE----KG-VRPKKS-TIQL----VADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~~~-~~~~----l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
..+..|..++...|++++++.--+..+. .| +.-|.. .|.. -+.++...|+.++|.+.|+.+-
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3455677777888888776655544431 22 233322 3332 2355667899999999998754
No 452
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=41.46 E-value=68 Score=27.89 Aligned_cols=52 Identities=13% Similarity=-0.006 Sum_probs=28.7
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 356 CNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
.+.++.+.|.+++.++++.- +.....|..+...-.+.|+.+.|.+.|++..+
T Consensus 6 ~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 6 AESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred cccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 34555556666666665542 33344555555555556666666666655555
No 453
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=40.54 E-value=2.6e+02 Score=24.65 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=33.4
Q ss_pred HhCCCHHHHHHHHHHHHHC------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008925 146 CSKNSIEEAWNVVYKMVAS------------GIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPN 204 (548)
Q Consensus 146 ~~~g~~~~a~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 204 (548)
...||..+|+.-++.-... --.|.+.....++..| ..+++++|.+.+.++-+.|+.|.
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHH
Confidence 3456666665555543321 0135555555555544 34677788888888777777654
No 454
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=40.31 E-value=10 Score=29.02 Aligned_cols=19 Identities=16% Similarity=0.372 Sum_probs=17.4
Q ss_pred ccccchhhhhHHh-hccCCCCCch
Q 008925 501 DTVWTATKSLFVN-TYGSGVQPMV 523 (548)
Q Consensus 501 g~~w~~~~~~~~~-~~~~~~~~~~ 523 (548)
|++|+++ |+ .+||.+||..
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~ 21 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS 21 (116)
T ss_pred CCCccce----EEEEeCCCcCccH
Confidence 7999988 89 9999999975
No 455
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=40.30 E-value=69 Score=21.15 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=28.2
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCChHHHHHHH
Q 008925 39 LTRQKRFKSILSLISKVEKDGMKPDSILFNAMINAC-----SESGNVDEAMKIF 87 (548)
Q Consensus 39 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~ 87 (548)
+...|++=+|-++++.+=.....+....+..+|... .+.|+...|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 445677777777777775432233444555555443 3567777776654
No 456
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=40.26 E-value=2.6e+02 Score=24.69 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHH---cCCCCCHHHHHHHHH-----HHHhcCChHHHHHHHHHHHH
Q 008925 361 MQRAMSIYEKMCE---IGINPNLKTYETLLW-----GYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 361 ~~~A~~~~~~~~~---~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 408 (548)
.+.|.+.|+++.+ ..++|...++..|+- .|-..|+.++|.++.++..+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4667777777664 225777666555543 34568999999988877654
No 457
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=40.00 E-value=2.9e+02 Score=25.13 Aligned_cols=100 Identities=10% Similarity=0.131 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-
Q 008925 132 KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVA----SGIQPDAVTY-NTLARAYAQYGETYRAEQMLFEMQNNQVRPNE- 205 (548)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~- 205 (548)
..-...+..+...|++.++.+.+.+++.+..+ .|.+.|.... .-|.-.|....-.++.++..+.+.+.|...+.
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 33456778888899999998888888776554 3444443222 12333444444456677777777777653221
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 206 ---RTCGIIVSGYCKEGNMEDAMRFLYRMKE 233 (548)
Q Consensus 206 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 233 (548)
.+|.-+- +....++.+|-.++-+...
T Consensus 192 NRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 192 NRYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hhHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 1222211 2233466677666666544
No 458
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.80 E-value=2.9e+02 Score=25.08 Aligned_cols=199 Identities=12% Similarity=0.136 Sum_probs=84.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHHHHHh----cCCCCCHHHHH
Q 008925 35 LVAALTRQKRFKSILSLISKVEKDGMKPDSI-------LFNAMINACSESGNVDEAMKIFQKMKD----SGCKPTTSTYN 103 (548)
Q Consensus 35 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~ 103 (548)
+.+...+.+++++|+..+.+++..|+..|.. +...+...|...|+...-.+....... -.-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 3444555666677777777766666554432 334455666666665444333322211 10011222333
Q ss_pred HHHHHHhcc-CChHHHHHHHHHhh----hCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH----HHCCCCCCHHHHH
Q 008925 104 TLIKGYGNV-GKPEESLKLLQLMS----QDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKM----VASGIQPDAVTYN 174 (548)
Q Consensus 104 ~l~~~~~~~-g~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~ 174 (548)
+|+..+-.. ..++.-+.+..... +....-.....-.-++..+.+.|.+.+|+.+...+ .+..-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 333333222 12232222222221 11000001112234566777777777777665443 3333334433322
Q ss_pred HH-HHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHh
Q 008925 175 TL-ARAYAQYGETYRAEQMLFEMQNN----QVRPNERTCGIIVS--GYCKEGNMEDAMRFLYRMKE 233 (548)
Q Consensus 175 ~l-~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 233 (548)
.+ -..|....+..++..-+...... -.+|-...--.++. ..|...++..|..+|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 22 13344444444444333332211 12222222222222 13455567777777766655
No 459
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=39.78 E-value=69 Score=17.84 Aligned_cols=12 Identities=50% Similarity=0.706 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 008925 362 QRAMSIYEKMCE 373 (548)
Q Consensus 362 ~~A~~~~~~~~~ 373 (548)
+.|..+|++.+.
T Consensus 4 dRAR~IyeR~v~ 15 (32)
T PF02184_consen 4 DRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 460
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=39.56 E-value=2.7e+02 Score=24.52 Aligned_cols=28 Identities=21% Similarity=0.030 Sum_probs=19.8
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcchh
Q 008925 427 AIGLAREAKRVLKSAEEDRQSMPNKKDE 454 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 454 (548)
..++...|..+++++.+.++..-.+...
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~GVK~~i 217 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCGVKKDI 217 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCChHHHH
Confidence 4457788999999988877766544433
No 461
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=39.00 E-value=1.9e+02 Score=27.04 Aligned_cols=44 Identities=11% Similarity=0.314 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008925 66 LFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGY 109 (548)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (548)
-|..++......|.++..+.+|++++..|..|-...-..++..+
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 44555555555555556666666665555555444444444443
No 462
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.73 E-value=4.4e+02 Score=26.78 Aligned_cols=158 Identities=13% Similarity=0.054 Sum_probs=85.8
Q ss_pred ccCChhhHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-------HCCC-------
Q 008925 6 GKGKPHEAHYIFNCLIEEGH-----------RPTLITYTTLVAALTRQKRFKSILSLISKVE-------KDGM------- 60 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~------- 60 (548)
....+++|...|.-+..... +-.+.+...+...+..+|+.+-+.+++++.+ ...+
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 44567788888887776311 1133456666777888899888777777654 1111
Q ss_pred ------CCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh-ccCChHHHHHHHHHhhhCCC
Q 008925 61 ------KPDSILFNAM---INACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYG-NVGKPEESLKLLQLMSQDKN 130 (548)
Q Consensus 61 ------~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~ 130 (548)
+-|...|.+| +..+.+.|.+..|.++..-+.+....-|+.....+|..|+ +..++.--+++++.....+.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 1122333333 3445567778888887777777643335666666666664 34455555666555532211
Q ss_pred --CCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHH
Q 008925 131 --VKPNDRTYNILVRAWCSKNS---IEEAWNVVYKMVA 163 (548)
Q Consensus 131 --~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~ 163 (548)
.-|+-..-.+++..|..... -+.|...+.++..
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 12333333344444444433 3344444444433
No 463
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=38.18 E-value=3.2e+02 Score=25.10 Aligned_cols=113 Identities=9% Similarity=0.067 Sum_probs=58.7
Q ss_pred HHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008925 104 TLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQY 183 (548)
Q Consensus 104 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (548)
.++....+.++..+..+.+..+. ....-...+......|++..|++++.+..+.- .+...|+.+-..-.
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~-------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L~~-- 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK-------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHLSS-- 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHHhH--
Confidence 34455555555555555555553 23334455666778888888888887765531 01111111111111
Q ss_pred CCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008925 184 GETYRAEQMLFEMQNN-----QVRPNERTCGIIVSGYCKEGNMEDAMRFL 228 (548)
Q Consensus 184 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 228 (548)
+..+-....+.+.+. -...|+..|..+..+|.-.|+...+.+-+
T Consensus 172 -~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 172 -QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 112222222222111 11358889999999998888877665433
No 464
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=38.05 E-value=3.4e+02 Score=25.37 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHc---CCCCCHHHH--HHHHHHHHhCCChhHHHHHHHHHHH-----cCCCCCHH
Q 008925 243 FNSLIKGFLDIKDSDGVDKALTLMEEF---GVKPDVVTF--STIMDAWSSAGLMGKCQEIFDDMVK-----AGIEPDIH 311 (548)
Q Consensus 243 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 311 (548)
...++...-+.++.++|.+.++++.+. .-.|+...| ..+..++...|+...+.+++.+..+ .+++|++.
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 334455556667899999999988654 224555544 4455667788999999999998876 56666554
No 465
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=37.69 E-value=2.9e+02 Score=24.38 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008925 377 NPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK 414 (548)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 414 (548)
.|.+.....++..|.. +++++|.+.+.++-+.|+.|.
T Consensus 236 ~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHH
Confidence 4455555555554433 455666666666666655543
No 466
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.19 E-value=1.8e+02 Score=21.89 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 417 TIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
-|..++..|...|.+++|.+++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355566666667777777777766554
No 467
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.13 E-value=4.1e+02 Score=25.98 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH
Q 008925 149 NSIEEAWNVVYKMVASGIQPDAVT 172 (548)
Q Consensus 149 g~~~~a~~~~~~~~~~~~~~~~~~ 172 (548)
.+.+.|+.++..|++.|..|....
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~ 267 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIA 267 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 566666666666666665444333
No 468
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.76 E-value=5.7e+02 Score=27.54 Aligned_cols=302 Identities=11% Similarity=0.137 Sum_probs=142.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 008925 35 LVAALTRQKRFKSILSLISKVEKDGMKPDS--ILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNV 112 (548)
Q Consensus 35 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (548)
+-..|...|+|+.|+++-+. .|+. .++..-...|.+.+++..|-+++-++.+ .|..+.--+...
T Consensus 364 vWk~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~ 429 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEI 429 (911)
T ss_pred HHHHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhc
Confidence 34567788999999887653 3443 2455556778888999999999988743 244444445555
Q ss_pred CChHHHHHHH-HHhhhCCCCCCCHHHHHHHHH-----HHH-hCCCHH----HHHHHHHH--------HHHC-CCCCCHHH
Q 008925 113 GKPEESLKLL-QLMSQDKNVKPNDRTYNILVR-----AWC-SKNSIE----EAWNVVYK--------MVAS-GIQPDAVT 172 (548)
Q Consensus 113 g~~~~A~~~~-~~~~~~~~~~~~~~~~~~l~~-----~~~-~~g~~~----~a~~~~~~--------~~~~-~~~~~~~~ 172 (548)
.+.+ ++..| .+=.. .++|...+-..++. .|. +.++.+ ++..-++. +... ...-+...
T Consensus 430 ~~~~-~L~~~L~KKL~--~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~n 506 (911)
T KOG2034|consen 430 NQER-ALRTFLDKKLD--RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELN 506 (911)
T ss_pred CCHH-HHHHHHHHHHh--hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Confidence 5554 44433 22222 13444333333222 221 112211 22211111 1000 00111222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 008925 173 YNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLD 252 (548)
Q Consensus 173 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (548)
..+.-..+...|+.+....+-.-+. .|..++..+...+.+++|++++..-.. |. .+.-..-.+.
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~~----~e--l~yk~ap~Li- 570 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQRN----PE--LFYKYAPELI- 570 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhccc----hh--hHHHhhhHHH-
Confidence 2333344455566666555444332 345677778888888888887765421 11 1111111111
Q ss_pred CCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 008925 253 IKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSA---GLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKA 329 (548)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 329 (548)
...+......+..... ..+......++..+.+. .....+..+++-....-...++..+|.++..|++.. .+..
T Consensus 571 ~~~p~~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~-~~~l 646 (911)
T KOG2034|consen 571 THSPKETVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHE-RDDL 646 (911)
T ss_pred hcCcHHHHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCC-ccch
Confidence 1122222222222222 22233334444444443 234445555554444333567778888888776654 3344
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCC------hHHHHHHHHHHHHc
Q 008925 330 ESILTSMRKYGVHPNVVMFTTVISGWCNAVK------MQRAMSIYEKMCEI 374 (548)
Q Consensus 330 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~ 374 (548)
...++.....+-. ...-....++.|.+.+. ...++++|+++++.
T Consensus 647 l~~le~~~~~~~~-~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdl 696 (911)
T KOG2034|consen 647 LLYLEIIKFMKSR-VHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDL 696 (911)
T ss_pred HHHHHHHhhcccc-ceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHH
Confidence 4444444332111 12222444555555443 33445555555543
No 469
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.05 E-value=3.5e+02 Score=24.89 Aligned_cols=52 Identities=10% Similarity=0.134 Sum_probs=27.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 176 LARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKE 233 (548)
Q Consensus 176 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 233 (548)
++..+.+.+...+..+.+..+. ........+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444444444444444444443 223333445555667777777777766544
No 470
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.70 E-value=3.8e+02 Score=25.21 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008925 362 QRAMSIYEKMCEIGINPNL----KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWR 426 (548)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (548)
++...++..++.. -|+. ..|.++++.....|.++..+.+|++++..|-.|-.+.-..+++++.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3445555555442 2332 3456666666666666667777777766666666555555555554
No 471
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.35 E-value=4.3e+02 Score=25.69 Aligned_cols=134 Identities=15% Similarity=0.086 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHH-------HHHcCCCC--
Q 008925 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKY-GVHPNVVMFTTVISGWCNAVKMQRAMSIYEK-------MCEIGINP-- 378 (548)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~~-- 378 (548)
|..+|-.---+-.+..-..+..+-.+.+.+. .-..+...-..++.++....++.+-++..+. +.+.|..|
T Consensus 38 DEFvYQfqsfc~yr~~~~~~~~~e~~~l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~ 117 (404)
T PF10255_consen 38 DEFVYQFQSFCQYRSKLKKKTEEEIQLLKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLY 117 (404)
T ss_pred HHHHHHhhhHHHHhhhccCCCHHHHHHHHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHH
Q ss_pred ---CHHHHHHHHHHHHhcCChHHHHHHHHHH------HHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 379 ---NLKTYETLLWGYGEAKQPWRAEELLQVM------EEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 379 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
...+...|++..+-.||+..|++.++.+ .=..+.+-.. ++..++-+|...+++.+|++.|....
T Consensus 118 ~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 118 KMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=35.12 E-value=6.6e+02 Score=27.78 Aligned_cols=98 Identities=17% Similarity=0.277 Sum_probs=49.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcC---ChHHHHHHHHHHHhcCCCCCHHHHH
Q 008925 34 TLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNA-------MINACSESG---NVDEAMKIFQKMKDSGCKPTTSTYN 103 (548)
Q Consensus 34 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~ 103 (548)
.+-.++...+.+++|+..|+++... +|.....|.+ ++.-....| .+++|+.-|+.+... +--+--|.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 556 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYL 556 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHH
Confidence 3344555566666677666666543 2222222222 111122223 356666666666543 11222344
Q ss_pred HHHHHHhccCChHHHHHHHHHhhhCCCCCCC
Q 008925 104 TLIKGYGNVGKPEESLKLLQLMSQDKNVKPN 134 (548)
Q Consensus 104 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 134 (548)
.-...|.+.|++++-++.+.-..+.....|.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 4445566777777777766666555433443
No 473
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.35 E-value=4.3e+02 Score=25.47 Aligned_cols=175 Identities=14% Similarity=0.139 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhC--------CCCCCC
Q 008925 65 ILFNAMINACSESGNVDEAMKIFQKMKDSG--CKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD--------KNVKPN 134 (548)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~ 134 (548)
..+.-+...|...|+++.|++.+.+....- .+.....|..+|..-...|+|.....+..+..+. ..+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 367788999999999999999999976531 1123345666676666777776666655554432 124566
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------C-CCCHHHHHHHHHHHHhcCCHHHHHH-----HHHHHHhCCCC
Q 008925 135 DRTYNILVRAWCSKNSIEEAWNVVYKMVASG------I-QPDAVTYNTLARAYAQYGETYRAEQ-----MLFEMQNNQVR 202 (548)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~g~~~~a~~-----~~~~~~~~~~~ 202 (548)
...+..+.....+ .+..|.+.|-...... + +.|..+|..| .+...-++-+--+. .|+...+.
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggL-cALAtfdr~~Lk~~vi~n~~Fk~flel--- 304 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGL-CALATFDRQDLKLNVIKNESFKLFLEL--- 304 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhh-HhhccCCHHHHHHHHHcchhhhhHHhc---
Confidence 7777777766655 7777776664432211 1 2345555543 23322222221111 23333332
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHH
Q 008925 203 PNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL-----EVHPNLVVFNSLIK 248 (548)
Q Consensus 203 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~ 248 (548)
.+.....+..-| .+++...+++++++... -+.|.+.+...+|.
T Consensus 305 -~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 305 -EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred -ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 444555454444 46788888888887543 23566666655554
No 474
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.94 E-value=6.4e+02 Score=27.28 Aligned_cols=53 Identities=11% Similarity=0.050 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 396 PWRAEELLQVMEEKGVRPKKS--TIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 396 ~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.+++.++-.-.....+.|-.. ++...+..+.+.+++..|-.+-++.++..++.
T Consensus 1063 ~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~ 1117 (1202)
T KOG0292|consen 1063 LEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSP 1117 (1202)
T ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence 333433333334455666554 44556678889999999998888888766554
No 475
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.80 E-value=1.9e+02 Score=21.31 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=17.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 008925 385 TLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTI 418 (548)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 418 (548)
.|.-.|.+.|+.+.|.+-|+.=.. +-|...++
T Consensus 77 hLGlLys~~G~~e~a~~eFetEKa--lFPES~~f 108 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFETEKA--LFPESGVF 108 (121)
T ss_pred HHHHHHhhcCChHHHHHHHHHhhh--hCccchhH
Confidence 344456666666666666654433 34544443
No 476
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.38 E-value=2.5e+02 Score=25.78 Aligned_cols=43 Identities=7% Similarity=0.264 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 331 SILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
++++.+...+++|.-.++.-+.-.+.+.=.+.+.+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4455555555555555544444444454555555555555543
No 477
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=32.35 E-value=92 Score=18.12 Aligned_cols=29 Identities=14% Similarity=-0.054 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008925 417 TIQLVADSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
++..+++.-...+++++|..=++++++..
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 56677888888888888888888876443
No 478
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=32.11 E-value=4.2e+02 Score=24.58 Aligned_cols=133 Identities=13% Similarity=0.041 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhhhCCCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008925 115 PEESLKLLQLMSQDKNV---KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQ 191 (548)
Q Consensus 115 ~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 191 (548)
.++|.+.|+........ ..+......+.....+.|+.+.-..+++.... ..+......++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 56778888887764222 33445555666666777776655455444443 3467777888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHc
Q 008925 192 MLFEMQNNQVRPNERTCGIIVSGYCKEGN--MEDAMRFLYR----MKELEVHPNLVVFNSLIKGFLD 252 (548)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~----~~~~~~~~~~~~~~~l~~~~~~ 252 (548)
+++.+......++... ..++..+...+. .+.+..++.. +.+. ...+......++..+..
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~ 287 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAG 287 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCT
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhc
Confidence 8888887542223333 333434442333 3666666543 3332 22332255555555443
No 479
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.84 E-value=6.4e+02 Score=26.64 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 173 YNTLARAYAQYGETYRAEQMLFEMQNN 199 (548)
Q Consensus 173 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 199 (548)
|..+..+|....+.+.+.++++++.+.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 445667777778888888888887763
No 480
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.24 E-value=1.5e+02 Score=19.79 Aligned_cols=49 Identities=20% Similarity=0.229 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008925 133 PNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQ 182 (548)
Q Consensus 133 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (548)
|....++.++...++..-.+.++..+.++.+.| ..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 444555666666666666666677777766666 3455555544444433
No 481
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=31.14 E-value=2.8e+02 Score=22.28 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008925 314 SILAKGYVRAGEPQKAESILTSMRKYGV-----HPNVVMFTTVISGWCNAVK-MQRAMSIYEKMCEIGINPNLKTYETLL 387 (548)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 387 (548)
+.++.-....+++.....+++.+..... ..+...|..++.+..+..- --.+..+|.-+.+.+.++++.-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444444455555555544422100 1122334444444433332 223344444444444444444444444
Q ss_pred HHHHh
Q 008925 388 WGYGE 392 (548)
Q Consensus 388 ~~~~~ 392 (548)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 44443
No 482
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=30.36 E-value=4.9e+02 Score=24.87 Aligned_cols=53 Identities=6% Similarity=-0.082 Sum_probs=24.7
Q ss_pred HHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCCChhHHHHHHHHH
Q 008925 249 GFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWS-SAGLMGKCQEIFDDM 301 (548)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 301 (548)
.+.+.|-+..|.+..+.+...++.-|+.....+|+.|+ +.++++--+++.+..
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 34444555555555555555444334444444444442 444444444444443
No 483
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.26 E-value=8.3e+02 Score=27.49 Aligned_cols=118 Identities=11% Similarity=0.111 Sum_probs=61.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 008925 102 YNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPN----DRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDA----VTY 173 (548)
Q Consensus 102 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~ 173 (548)
|..+++.+-+.+..+.+.++-...++. .+++ ..+++.+.+.....|.+-+|...+-. .||. .+.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcL 1057 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHH
Confidence 555666666777777777666555543 2222 23456666666666766666554433 2332 334
Q ss_pred HHHHHHHHhcCCHH------------HHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008925 174 NTLARAYAQYGETY------------RAEQ-MLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRF 227 (548)
Q Consensus 174 ~~l~~~~~~~g~~~------------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 227 (548)
..|+-.+...|.++ +... +++..-+..+......|+.|-.-+...+++.+|-.+
T Consensus 1058 RqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 45555556665543 3333 222222222222334455555556667777766544
No 484
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.93 E-value=3.3e+02 Score=28.07 Aligned_cols=71 Identities=18% Similarity=0.201 Sum_probs=42.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChH------HHHHHHHHHHhcCCCCCHHHHHHH
Q 008925 34 TLVAALTRQKRFKSILSLISKVEKDGM--KPDSILFNAMINACSESGNVD------EAMKIFQKMKDSGCKPTTSTYNTL 105 (548)
Q Consensus 34 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 105 (548)
+|+.+|...|++.++.++++.....+- ..=...+|..++...+.|.++ .|.+.+++..- .-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l---n~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL---NGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc---CCcchHHHHH
Confidence 678888888888888888888765421 111345666777777777653 44445554442 2244555444
Q ss_pred HH
Q 008925 106 IK 107 (548)
Q Consensus 106 ~~ 107 (548)
+.
T Consensus 110 ~~ 111 (1117)
T COG5108 110 CQ 111 (1117)
T ss_pred HH
Confidence 43
No 485
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=28.47 E-value=5.7e+02 Score=25.04 Aligned_cols=58 Identities=12% Similarity=0.009 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 383 YETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
...|+.-|.-.|+..+|.++++++- ..+-.....+.+++.+.-+.|+-..-..+++..
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLg-mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~c 569 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELG-MPFFHHEVVKKALVMVMEKKGDSTMILDLLKEC 569 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhC-CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4567778888888888888887652 111122336667777777777766555555554
No 486
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=28.34 E-value=4.8e+02 Score=24.12 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008925 295 QEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWC 356 (548)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 356 (548)
.++++.+.+.++.|.-.++..+.-.+.+.=.+...+.+|+.+.. |..-|..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 45777777777788777777777777777777888888888775 3333666666665
No 487
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=28.28 E-value=2.4e+02 Score=21.33 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=23.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 008925 70 MINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLI 106 (548)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 106 (548)
+++.+.++...++|+++++.|.+.| ..+...-+.|-
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr 102 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELR 102 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4566667777888888888888776 45554444333
No 488
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=28.12 E-value=4.9e+02 Score=24.11 Aligned_cols=110 Identities=10% Similarity=-0.012 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008925 151 IEEAWNVVYKMVASGI----QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMR 226 (548)
Q Consensus 151 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 226 (548)
.+.|.+.|++....+. ..+......+.....+.|..+....+++..... ++......++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5678888888887522 334555555666666777766655555555543 366777888888888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCC--hhhHHHHHH
Q 008925 227 FLYRMKELEVHPNLVVFNSLIKGFLDIKD--SDGVDKALT 264 (548)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~ 264 (548)
+++.+...+..++... ..++.++...+. .+.+.+.+.
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 9999888542222233 333444442332 245555443
No 489
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=28.03 E-value=2.1e+02 Score=26.33 Aligned_cols=76 Identities=9% Similarity=0.071 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 008925 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTT-VISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYE 384 (548)
Q Consensus 307 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 384 (548)
..|+..|...+.--.+.|.+.+...++.+..... +.|+..|-. ...-+...++++.+..+|.+.+..+ +.++..|.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~ 180 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWI 180 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHH
Confidence 4455566655555555666666667776666642 224444432 3333445677777777777777665 34444443
No 490
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=28.00 E-value=2.8e+02 Score=21.22 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008925 133 PNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGI------------------QPDAVTYNTLARAYAQYGETYRAEQMLF 194 (548)
Q Consensus 133 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 194 (548)
|...+...+...+..+ ...|..++++|.+.|. .+....+...+..+...|+++.|.+++.
T Consensus 17 ~~~vtl~elA~~l~cS--~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 17 PVEVTLDELAELLFCS--RRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLEQGKYEQALQLLD 94 (115)
T ss_pred CcceeHHHHHHHhCCC--HHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444455555544332 2345666666666541 1112334445555566666666666554
No 491
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=27.70 E-value=8.7e+02 Score=26.89 Aligned_cols=89 Identities=11% Similarity=0.132 Sum_probs=54.9
Q ss_pred HHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHH-------HHHHHHhCC---CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008925 107 KGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNI-------LVRAWCSKN---SIEEAWNVVYKMVASGIQPDAVTYNTL 176 (548)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l 176 (548)
+++.....++.|+..|+++... +|.....|.+ ++.-....| .+++|+.-|+.+... +.-+--|..-
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 558 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRES--FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGK 558 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhc--CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhH
Confidence 5666677899999999998764 3333333332 222223334 467788888777653 2223344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 008925 177 ARAYAQYGETYRAEQMLFEMQNN 199 (548)
Q Consensus 177 ~~~~~~~g~~~~a~~~~~~~~~~ 199 (548)
.-.|.+.|++++-.+-+.-..++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Confidence 55688889988877777666554
No 492
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=27.29 E-value=5.3e+02 Score=24.23 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=10.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 008925 178 RAYAQYGETYRAEQMLFEMQN 198 (548)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~ 198 (548)
..+.+.|+.++|..-|+....
T Consensus 373 dlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 373 DLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 334445555555555554443
No 493
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.91 E-value=2.6e+02 Score=20.62 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=12.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh
Q 008925 102 YNTLIKGYGNVGKPEESLKLLQLM 125 (548)
Q Consensus 102 ~~~l~~~~~~~g~~~~A~~~~~~~ 125 (548)
...|...|.+.|+.+.|.+-|+.-
T Consensus 75 HAhLGlLys~~G~~e~a~~eFetE 98 (121)
T COG4259 75 HAHLGLLYSNSGKDEQAVREFETE 98 (121)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHh
Confidence 334444555566666665555543
No 494
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=26.44 E-value=1.4e+02 Score=20.64 Aligned_cols=15 Identities=20% Similarity=-0.033 Sum_probs=8.4
Q ss_pred cCChHHHHHHHHHHH
Q 008925 393 AKQPWRAEELLQVME 407 (548)
Q Consensus 393 ~g~~~~A~~~~~~~~ 407 (548)
.|++++|+.+|...+
T Consensus 19 ~gny~eA~~lY~~al 33 (75)
T cd02680 19 KGNAEEAIELYTEAV 33 (75)
T ss_pred hhhHHHHHHHHHHHH
Confidence 455566666555554
No 495
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.83 E-value=2.3e+02 Score=21.36 Aligned_cols=45 Identities=22% Similarity=0.212 Sum_probs=28.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008925 386 LLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGL 430 (548)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 430 (548)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444445555677777777776656666666666667766664
No 496
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=25.50 E-value=4.8e+02 Score=27.01 Aligned_cols=75 Identities=23% Similarity=0.314 Sum_probs=53.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHhccCChH------HHHHHHHHhhhCCCCCCCHHHHHH
Q 008925 69 AMINACSESGNVDEAMKIFQKMKDS--GCKPTTSTYNTLIKGYGNVGKPE------ESLKLLQLMSQDKNVKPNDRTYNI 140 (548)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~~ 140 (548)
+|+.+|...|++-.+.++++..... |-+.-...+|..++...+.|.++ .|.+++++.. +.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~----ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR----LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh----cCCcchHHHH
Confidence 7899999999999999999998764 22333567888888888888653 4555555543 4456777777
Q ss_pred HHHHHHh
Q 008925 141 LVRAWCS 147 (548)
Q Consensus 141 l~~~~~~ 147 (548)
++.+...
T Consensus 109 l~~~sln 115 (1117)
T COG5108 109 LCQASLN 115 (1117)
T ss_pred HHHhhcC
Confidence 6665443
No 497
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=25.16 E-value=2.3e+02 Score=19.43 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGY 109 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (548)
+.|..++..+.... +.++..||++...+
T Consensus 14 EmA~~mL~DLr~de-kRsPQLYnAI~k~L 41 (82)
T PF11123_consen 14 EMAQQMLADLRDDE-KRSPQLYNAIGKLL 41 (82)
T ss_pred HHHHHHHHHhcchh-hcChHHHHHHHHHH
Confidence 34444444443321 23444455444443
No 498
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=24.87 E-value=1.9e+02 Score=22.02 Aligned_cols=46 Identities=26% Similarity=0.286 Sum_probs=30.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008925 385 TLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGL 430 (548)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 430 (548)
.++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4455555666677788888888887777777766666666766664
No 499
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=24.75 E-value=24 Score=35.61 Aligned_cols=91 Identities=12% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHH
Q 008925 34 TLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINA--CSESGNVDEAMKIFQKMKDSGCKPTT--STYNTLIKGY 109 (548)
Q Consensus 34 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~ 109 (548)
..+.++.+.|++..|..+++++....+.+.......|+.+ ....|+.+.|++.+.......+++.. ..+.....++
T Consensus 29 ~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~ 108 (536)
T PF04348_consen 29 LAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAY 108 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHH
Confidence 3467788889999999999888755555555555555544 45678888898888754333233222 2344455666
Q ss_pred hccCChHHHHHHHHH
Q 008925 110 GNVGKPEESLKLLQL 124 (548)
Q Consensus 110 ~~~g~~~~A~~~~~~ 124 (548)
...|++-+|.+.+-.
T Consensus 109 ~~~~~~l~Aa~~~i~ 123 (536)
T PF04348_consen 109 EQQGDPLAAARERIA 123 (536)
T ss_dssp ---------------
T ss_pred HhcCCHHHHHHHHHH
Confidence 666766666554433
No 500
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.43 E-value=2.1e+02 Score=21.57 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=21.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 008925 71 INACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVG 113 (548)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (548)
+..+...+..-.|.++++.+.+.+..++..|.-..+..+...|
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3334444444555556666655544444444444445555444
Done!