Query 008925
Match_columns 548
No_of_seqs 790 out of 3553
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 14:52:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2E-41 6.8E-46 346.4 39.4 456 8-500 67-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.1E-40 3.9E-45 340.8 39.4 430 2-445 92-580 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-30 5.5E-35 250.6 49.5 381 36-429 6-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1E-30 3.6E-35 251.9 46.4 381 3-395 8-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.7E-28 5.7E-33 240.0 24.8 212 190-427 10-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 3.4E-28 1.2E-32 237.8 25.5 206 152-357 7-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 2.7E-26 9.2E-31 229.8 37.8 405 31-447 8-481 (514)
8 2gw1_A Mitochondrial precursor 100.0 3.2E-26 1.1E-30 229.3 36.6 402 3-416 15-483 (514)
9 2y4t_A DNAJ homolog subfamily 100.0 1.6E-24 5.3E-29 213.2 41.2 367 47-449 10-415 (450)
10 2y4t_A DNAJ homolog subfamily 100.0 1.6E-24 5.4E-29 213.1 41.1 318 11-338 9-357 (450)
11 3fp2_A TPR repeat-containing p 100.0 1E-24 3.4E-29 219.7 40.1 405 30-449 26-496 (537)
12 3fp2_A TPR repeat-containing p 99.9 3.1E-24 1.1E-28 216.1 39.8 393 3-409 34-491 (537)
13 2xm6_A Protein corresponding t 99.9 4.8E-20 1.6E-24 182.7 51.1 364 13-410 26-433 (490)
14 3ieg_A DNAJ homolog subfamily 99.9 4.5E-21 1.5E-25 182.2 39.4 339 28-425 2-350 (359)
15 3ieg_A DNAJ homolog subfamily 99.9 7.9E-21 2.7E-25 180.5 40.4 331 3-390 12-350 (359)
16 2xm6_A Protein corresponding t 99.9 4.3E-19 1.5E-23 175.9 52.5 365 47-445 25-433 (490)
17 2ooe_A Cleavage stimulation fa 99.9 1.3E-19 4.5E-24 181.5 47.8 421 17-446 2-494 (530)
18 3hym_B Cell division cycle pro 99.9 2.8E-20 9.5E-25 174.6 31.8 292 132-431 19-321 (330)
19 3hym_B Cell division cycle pro 99.9 3.8E-20 1.3E-24 173.7 32.1 263 69-338 27-298 (330)
20 4g1t_A Interferon-induced prot 99.9 8.8E-20 3E-24 180.4 34.1 361 135-500 51-460 (472)
21 1fch_A Peroxisomal targeting s 99.9 3.2E-20 1.1E-24 177.1 27.6 308 110-443 36-358 (368)
22 2ooe_A Cleavage stimulation fa 99.9 5.7E-18 1.9E-22 169.6 41.5 397 5-409 23-492 (530)
23 1fch_A Peroxisomal targeting s 99.9 3.3E-20 1.1E-24 177.0 24.2 276 148-448 38-318 (368)
24 4eqf_A PEX5-related protein; a 99.9 9.9E-20 3.4E-24 173.5 25.0 276 135-442 65-354 (365)
25 4g1t_A Interferon-induced prot 99.9 2.4E-18 8.2E-23 170.0 34.9 388 28-449 50-464 (472)
26 4eqf_A PEX5-related protein; a 99.8 8.3E-20 2.9E-24 174.0 22.0 277 98-405 64-352 (365)
27 3cv0_A Peroxisome targeting si 99.8 6.3E-19 2.2E-23 165.0 23.7 280 135-442 21-313 (327)
28 1xi4_A Clathrin heavy chain; a 99.8 4E-16 1.4E-20 161.9 45.0 377 3-440 994-1380(1630)
29 3cv0_A Peroxisome targeting si 99.8 7.2E-18 2.4E-22 157.8 28.3 279 99-407 21-313 (327)
30 1xi4_A Clathrin heavy chain; a 99.8 6.2E-16 2.1E-20 160.5 41.9 384 33-491 989-1376(1630)
31 1b89_A Protein (clathrin heavy 99.8 2.5E-18 8.5E-23 160.1 21.9 378 6-440 15-413 (449)
32 1b89_A Protein (clathrin heavy 99.8 5.6E-19 1.9E-23 164.5 17.3 283 41-367 15-304 (449)
33 3mkr_A Coatomer subunit epsilo 99.8 2E-17 6.9E-22 151.1 27.0 250 144-408 8-263 (291)
34 3mkr_A Coatomer subunit epsilo 99.8 2.9E-17 9.8E-22 150.0 27.7 249 109-374 9-264 (291)
35 3e4b_A ALGK; tetratricopeptide 99.8 4E-17 1.4E-21 159.1 22.7 373 34-443 8-420 (452)
36 3e4b_A ALGK; tetratricopeptide 99.8 4.9E-16 1.7E-20 151.5 27.9 373 4-407 13-419 (452)
37 2pl2_A Hypothetical conserved 99.7 2.3E-16 8E-21 137.6 22.2 112 289-404 98-209 (217)
38 3uq3_A Heat shock protein STI1 99.7 6.6E-16 2.2E-20 139.0 25.3 224 208-445 8-237 (258)
39 3uq3_A Heat shock protein STI1 99.7 5.2E-16 1.8E-20 139.6 24.4 224 171-408 6-235 (258)
40 4e6h_A MRNA 3'-END-processing 99.7 5.8E-13 2E-17 134.1 46.7 435 9-448 47-574 (679)
41 3u4t_A TPR repeat-containing p 99.7 1.4E-15 4.8E-20 138.1 25.3 237 207-447 5-253 (272)
42 2pl2_A Hypothetical conserved 99.7 6.4E-16 2.2E-20 134.8 21.7 115 254-372 98-212 (217)
43 3u4t_A TPR repeat-containing p 99.7 3.6E-15 1.2E-19 135.4 25.9 231 140-374 8-250 (272)
44 2h6f_A Protein farnesyltransfe 99.7 5.9E-15 2E-19 139.2 27.7 247 170-425 97-363 (382)
45 1ouv_A Conserved hypothetical 99.7 3E-14 1E-18 129.3 31.6 222 205-444 6-251 (273)
46 2h6f_A Protein farnesyltransfe 99.7 5.9E-15 2E-19 139.3 26.6 249 135-391 97-364 (382)
47 1ouv_A Conserved hypothetical 99.7 8.3E-14 2.8E-18 126.4 32.8 221 171-409 7-251 (273)
48 2ho1_A Type 4 fimbrial biogene 99.7 2.4E-14 8.2E-19 128.3 27.1 204 240-447 37-241 (252)
49 2ho1_A Type 4 fimbrial biogene 99.7 4.9E-14 1.7E-18 126.2 27.9 201 30-234 38-238 (252)
50 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.9E-15 6.5E-20 137.5 18.6 224 4-234 15-244 (275)
51 2vq2_A PILW, putative fimbrial 99.7 5.3E-14 1.8E-18 123.5 27.0 204 28-234 7-211 (225)
52 3spa_A Mtrpol, DNA-directed RN 99.7 1.2E-16 3.9E-21 160.9 10.3 118 275-392 127-248 (1134)
53 2q7f_A YRRB protein; TPR, prot 99.7 9.2E-15 3.2E-19 130.2 21.9 198 206-408 24-221 (243)
54 2vq2_A PILW, putative fimbrial 99.7 5.7E-14 2E-18 123.3 26.2 202 240-444 8-211 (225)
55 2q7f_A YRRB protein; TPR, prot 99.7 1.2E-14 4.1E-19 129.4 21.6 210 171-386 24-233 (243)
56 3sf4_A G-protein-signaling mod 99.7 1.7E-15 5.8E-20 146.3 16.3 282 132-445 6-337 (406)
57 3spa_A Mtrpol, DNA-directed RN 99.7 2.3E-16 8E-21 158.7 10.4 152 239-395 126-287 (1134)
58 1xnf_A Lipoprotein NLPI; TPR, 99.7 9.6E-15 3.3E-19 132.8 20.3 245 184-438 19-269 (275)
59 2ond_A Cleavage stimulation fa 99.6 3.8E-13 1.3E-17 124.3 29.8 224 222-450 33-276 (308)
60 3sf4_A G-protein-signaling mod 99.6 7E-15 2.4E-19 142.0 17.6 304 26-361 6-363 (406)
61 4a1s_A PINS, partner of inscut 99.6 1.6E-14 5.4E-19 139.8 20.1 279 136-446 49-374 (411)
62 4e6h_A MRNA 3'-END-processing 99.6 1.3E-11 4.5E-16 124.3 40.6 396 45-446 48-535 (679)
63 3vtx_A MAMA; tetratricopeptide 99.6 1.7E-13 5.6E-18 116.2 22.7 169 274-446 4-172 (184)
64 3ro2_A PINS homolog, G-protein 99.6 3.6E-14 1.2E-18 132.9 19.5 278 137-446 7-334 (338)
65 4a1s_A PINS, partner of inscut 99.6 1.7E-14 5.8E-19 139.6 17.1 278 99-409 48-372 (411)
66 3ulq_A Response regulator aspa 99.6 2.8E-13 9.6E-18 129.5 24.2 234 211-447 109-371 (383)
67 3vtx_A MAMA; tetratricopeptide 99.6 5.4E-13 1.9E-17 113.0 22.4 165 240-408 5-169 (184)
68 3ulq_A Response regulator aspa 99.6 3.4E-13 1.1E-17 129.0 22.8 299 39-373 22-367 (383)
69 3ro2_A PINS homolog, G-protein 99.6 7.6E-14 2.6E-18 130.7 17.5 278 30-339 6-332 (338)
70 4abn_A Tetratricopeptide repea 99.6 1.6E-13 5.6E-18 134.5 19.6 215 44-265 83-317 (474)
71 4abn_A Tetratricopeptide repea 99.6 3.3E-13 1.1E-17 132.3 21.7 213 220-440 83-317 (474)
72 2ond_A Cleavage stimulation fa 99.5 3.2E-12 1.1E-16 118.0 26.3 218 11-234 33-270 (308)
73 3q15_A PSP28, response regulat 99.5 6.5E-12 2.2E-16 119.7 25.3 230 210-443 106-364 (378)
74 3nf1_A KLC 1, kinesin light ch 99.5 1.4E-13 4.6E-18 127.5 13.2 56 388-445 252-308 (311)
75 3nf1_A KLC 1, kinesin light ch 99.5 7.8E-13 2.7E-17 122.4 17.7 205 204-408 26-306 (311)
76 3q15_A PSP28, response regulat 99.5 1.6E-11 5.5E-16 117.0 26.1 233 106-373 108-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.5 5.4E-12 1.9E-16 106.7 19.9 168 276-447 9-176 (186)
78 1hz4_A MALT regulatory protein 99.5 3.5E-11 1.2E-15 114.5 27.0 272 140-442 19-320 (373)
79 1hz4_A MALT regulatory protein 99.4 6.8E-11 2.3E-15 112.5 27.8 166 101-267 16-201 (373)
80 4gyw_A UDP-N-acetylglucosamine 99.4 3.1E-12 1.1E-16 130.4 19.4 163 275-442 9-172 (723)
81 4i17_A Hypothetical protein; T 99.4 1.5E-11 5.1E-16 108.1 20.9 201 237-448 4-213 (228)
82 4gyw_A UDP-N-acetylglucosamine 99.4 9E-12 3.1E-16 127.0 21.6 166 239-408 8-173 (723)
83 4i17_A Hypothetical protein; T 99.4 4.1E-11 1.4E-15 105.3 22.4 100 169-269 6-105 (228)
84 3as5_A MAMA; tetratricopeptide 99.4 4.4E-11 1.5E-15 101.0 20.0 163 242-408 10-172 (186)
85 3edt_B KLC 2, kinesin light ch 99.3 7.6E-12 2.6E-16 113.8 13.4 230 4-234 11-281 (283)
86 3edt_B KLC 2, kinesin light ch 99.3 1.3E-11 4.4E-16 112.3 14.1 229 216-444 12-281 (283)
87 1qqe_A Vesicular transport pro 99.3 8E-11 2.7E-15 107.6 15.7 194 249-444 46-269 (292)
88 3mv2_B Coatomer subunit epsilo 99.3 9.3E-10 3.2E-14 98.3 22.0 184 259-449 85-287 (310)
89 1qqe_A Vesicular transport pro 99.3 2.9E-10 9.8E-15 103.9 18.9 68 44-126 32-104 (292)
90 3qky_A Outer membrane assembly 99.3 4.1E-10 1.4E-14 101.1 19.3 172 276-449 16-229 (261)
91 3mv2_B Coatomer subunit epsilo 99.3 3.5E-09 1.2E-13 94.6 24.7 185 224-417 85-288 (310)
92 3urz_A Uncharacterized protein 99.2 2.3E-10 7.9E-15 98.7 16.5 128 316-447 60-189 (208)
93 2fo7_A Synthetic consensus TPR 99.2 8E-10 2.7E-14 87.6 17.8 131 312-445 3-133 (136)
94 3dra_A Protein farnesyltransfe 99.2 1.1E-08 3.7E-13 92.6 26.6 221 221-446 49-290 (306)
95 2pzi_A Probable serine/threoni 99.2 1.1E-10 3.6E-15 119.9 15.2 173 251-430 402-583 (681)
96 2uy1_A Cleavage stimulation fa 99.2 1.3E-08 4.3E-13 99.7 29.1 376 6-442 6-411 (493)
97 2uy1_A Cleavage stimulation fa 99.2 2.3E-08 7.9E-13 97.8 30.6 358 8-408 28-412 (493)
98 3qky_A Outer membrane assembly 99.2 1.1E-09 3.6E-14 98.4 18.7 59 349-408 152-223 (261)
99 2fo7_A Synthetic consensus TPR 99.2 1.8E-09 6.3E-14 85.4 18.0 130 277-409 3-132 (136)
100 3urz_A Uncharacterized protein 99.2 1E-09 3.5E-14 94.6 17.5 189 208-423 7-198 (208)
101 3rjv_A Putative SEL1 repeat pr 99.2 6.3E-09 2.2E-13 89.8 21.9 175 11-200 3-198 (212)
102 3dra_A Protein farnesyltransfe 99.2 2.7E-08 9.3E-13 89.9 26.6 217 152-373 50-286 (306)
103 2pzi_A Probable serine/threoni 99.2 3.4E-10 1.2E-14 116.1 15.3 153 6-164 403-563 (681)
104 2r5s_A Uncharacterized protein 99.2 5.6E-10 1.9E-14 93.4 13.6 161 278-442 9-171 (176)
105 3rjv_A Putative SEL1 repeat pr 99.1 7E-09 2.4E-13 89.6 20.9 176 47-235 4-198 (212)
106 3qou_A Protein YBBN; thioredox 99.1 1.4E-09 4.8E-14 98.9 17.1 165 272-442 114-282 (287)
107 4ga2_A E3 SUMO-protein ligase 99.1 1.9E-10 6.5E-15 93.2 9.8 141 284-429 6-148 (150)
108 2vsy_A XCC0866; transferase, g 99.1 2.5E-09 8.6E-14 107.8 19.4 154 253-410 2-158 (568)
109 4ga2_A E3 SUMO-protein ligase 99.1 5.1E-10 1.7E-14 90.7 11.3 141 4-149 7-148 (150)
110 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.2E-08 4.2E-13 89.0 20.6 190 239-449 3-218 (225)
111 2r5s_A Uncharacterized protein 99.1 1.7E-09 5.9E-14 90.4 13.5 158 211-372 12-171 (176)
112 2vsy_A XCC0866; transferase, g 99.1 4.3E-09 1.5E-13 106.0 18.1 154 7-165 2-158 (568)
113 2ifu_A Gamma-SNAP; membrane fu 99.1 5E-09 1.7E-13 96.4 16.9 158 249-407 45-222 (307)
114 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.4E-08 8.4E-13 87.1 20.2 186 28-235 3-214 (225)
115 3qou_A Protein YBBN; thioredox 99.0 1E-08 3.6E-13 93.1 17.5 86 286-372 196-282 (287)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.0 3.3E-08 1.1E-12 85.5 18.9 131 313-448 9-154 (213)
117 2ifu_A Gamma-SNAP; membrane fu 99.0 2.1E-08 7.2E-13 92.2 18.4 200 6-232 3-222 (307)
118 3u3w_A Transcriptional activat 99.0 2.9E-07 1E-11 83.9 25.7 164 280-444 80-266 (293)
119 3q7a_A Farnesyltransferase alp 99.0 3.5E-07 1.2E-11 83.5 24.5 219 219-442 68-329 (349)
120 3gyz_A Chaperone protein IPGC; 99.0 6.6E-09 2.3E-13 83.6 11.5 97 347-445 38-134 (151)
121 4gco_A Protein STI-1; structur 98.9 4.4E-08 1.5E-12 76.3 15.2 95 312-408 15-109 (126)
122 4gco_A Protein STI-1; structur 98.9 4.1E-08 1.4E-12 76.5 15.0 98 347-446 15-112 (126)
123 3q7a_A Farnesyltransferase alp 98.9 1E-06 3.5E-11 80.4 25.9 172 149-325 68-257 (349)
124 3u3w_A Transcriptional activat 98.9 2.5E-07 8.6E-12 84.3 21.7 127 106-232 82-223 (293)
125 3dss_A Geranylgeranyl transfer 98.9 1.1E-06 3.8E-11 79.8 24.8 184 257-446 91-306 (331)
126 3gyz_A Chaperone protein IPGC; 98.9 5.5E-09 1.9E-13 84.1 8.7 104 309-416 35-138 (151)
127 2qfc_A PLCR protein; TPR, HTH, 98.9 2.7E-07 9.3E-12 84.1 21.2 168 277-445 77-267 (293)
128 2vgx_A Chaperone SYCD; alterna 98.9 1.1E-08 3.6E-13 82.6 10.3 102 345-448 21-122 (148)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.3E-07 4.6E-12 81.5 18.0 130 278-415 9-154 (213)
130 1a17_A Serine/threonine protei 98.9 1.2E-07 4.2E-12 77.9 16.8 129 311-442 14-144 (166)
131 1a17_A Serine/threonine protei 98.9 1.3E-07 4.6E-12 77.7 16.7 129 276-407 14-144 (166)
132 2e2e_A Formate-dependent nitri 98.9 7.4E-08 2.5E-12 80.4 15.2 123 3-128 19-144 (177)
133 2qfc_A PLCR protein; TPR, HTH, 98.8 6E-07 2.1E-11 81.8 21.2 167 242-408 77-265 (293)
134 4f3v_A ESX-1 secretion system 98.8 1.5E-07 5E-12 83.1 16.1 133 312-447 104-240 (282)
135 1na0_A Designed protein CTPR3; 98.8 2.3E-07 7.8E-12 71.9 15.8 114 311-427 10-123 (125)
136 2e2e_A Formate-dependent nitri 98.8 5.8E-08 2E-12 81.1 12.9 120 287-409 22-144 (177)
137 3gw4_A Uncharacterized protein 98.8 5.2E-08 1.8E-12 83.4 12.9 158 4-162 2-174 (203)
138 3gw4_A Uncharacterized protein 98.8 5.3E-08 1.8E-12 83.3 12.8 159 286-445 3-177 (203)
139 1na0_A Designed protein CTPR3; 98.8 3.1E-07 1.1E-11 71.1 16.1 115 275-392 9-123 (125)
140 2vgx_A Chaperone SYCD; alterna 98.8 3.4E-08 1.2E-12 79.6 10.6 110 16-128 9-118 (148)
141 2lni_A Stress-induced-phosphop 98.8 1.9E-07 6.4E-12 73.5 14.9 118 308-429 14-132 (133)
142 2c2l_A CHIP, carboxy terminus 98.8 6.9E-08 2.3E-12 87.3 13.3 194 239-444 3-199 (281)
143 2c2l_A CHIP, carboxy terminus 98.8 6.3E-08 2.2E-12 87.6 13.0 98 134-233 3-100 (281)
144 2vyi_A SGTA protein; chaperone 98.8 2.9E-07 9.8E-12 72.0 15.4 116 312-430 14-129 (131)
145 4f3v_A ESX-1 secretion system 98.8 1.4E-07 4.7E-12 83.2 14.4 130 101-234 104-237 (282)
146 3dss_A Geranylgeranyl transfer 98.8 8.4E-06 2.9E-10 74.1 26.3 48 360-408 253-303 (331)
147 1p5q_A FKBP52, FK506-binding p 98.7 2.8E-07 9.6E-12 85.7 16.6 131 309-442 146-292 (336)
148 2lni_A Stress-induced-phosphop 98.7 2.2E-07 7.4E-12 73.1 13.8 118 274-394 15-132 (133)
149 2vyi_A SGTA protein; chaperone 98.7 2.8E-07 9.5E-12 72.1 14.3 120 274-396 11-130 (131)
150 2xcb_A PCRH, regulatory protei 98.7 1.9E-07 6.6E-12 74.6 12.5 98 347-446 20-117 (142)
151 4gcn_A Protein STI-1; structur 98.7 1.3E-07 4.6E-12 73.7 10.9 100 346-446 9-114 (127)
152 1p5q_A FKBP52, FK506-binding p 98.7 3.7E-07 1.3E-11 84.9 15.7 130 275-407 147-292 (336)
153 3upv_A Heat shock protein STI1 98.7 3.7E-07 1.3E-11 71.1 13.0 97 347-445 6-102 (126)
154 3upv_A Heat shock protein STI1 98.7 5.5E-07 1.9E-11 70.1 14.0 96 311-408 5-100 (126)
155 3sz7_A HSC70 cochaperone (SGT) 98.7 6E-07 2E-11 73.7 14.8 97 310-408 11-107 (164)
156 3q49_B STIP1 homology and U bo 98.7 6.9E-07 2.4E-11 70.7 14.7 100 344-445 8-107 (137)
157 4gcn_A Protein STI-1; structur 98.7 4.3E-07 1.5E-11 70.8 13.0 95 313-408 11-111 (127)
158 2xcb_A PCRH, regulatory protei 98.7 1.2E-07 3.9E-12 75.9 9.6 99 309-409 17-115 (142)
159 2fbn_A 70 kDa peptidylprolyl i 98.7 5.3E-08 1.8E-12 83.1 8.0 87 346-435 89-176 (198)
160 2kck_A TPR repeat; tetratricop 98.6 4.4E-07 1.5E-11 68.7 12.3 101 345-447 6-109 (112)
161 2fbn_A 70 kDa peptidylprolyl i 98.6 7.7E-08 2.6E-12 82.0 8.4 149 248-400 12-176 (198)
162 1hxi_A PEX5, peroxisome target 98.6 4E-07 1.4E-11 70.3 11.6 96 348-446 20-116 (121)
163 1elw_A TPR1-domain of HOP; HOP 98.6 1.7E-06 5.7E-11 66.1 15.1 95 312-408 6-100 (118)
164 1elw_A TPR1-domain of HOP; HOP 98.6 1.9E-06 6.6E-11 65.8 15.4 111 275-388 4-114 (118)
165 3q49_B STIP1 homology and U bo 98.6 2.6E-06 8.8E-11 67.3 16.0 100 307-408 6-105 (137)
166 1elr_A TPR2A-domain of HOP; HO 98.5 6.8E-07 2.3E-11 69.9 11.3 108 312-422 6-119 (131)
167 2dba_A Smooth muscle cell asso 98.5 3.3E-06 1.1E-10 67.6 15.4 97 309-408 27-127 (148)
168 3sz7_A HSC70 cochaperone (SGT) 98.5 1.6E-06 5.5E-11 71.1 13.5 99 28-128 10-108 (164)
169 1hxi_A PEX5, peroxisome target 98.5 1.3E-06 4.3E-11 67.4 11.0 93 314-408 21-113 (121)
170 2kck_A TPR repeat; tetratricop 98.5 3.1E-06 1.1E-10 63.9 13.1 99 28-128 5-106 (112)
171 3ro3_A PINS homolog, G-protein 98.5 1.2E-06 4.1E-11 71.4 11.4 133 312-444 11-158 (164)
172 2hr2_A Hypothetical protein; a 98.5 1.8E-06 6E-11 68.6 11.6 102 347-449 13-136 (159)
173 1elr_A TPR2A-domain of HOP; HO 98.5 2.2E-06 7.7E-11 66.8 12.4 112 276-390 5-122 (131)
174 1wao_1 Serine/threonine protei 98.5 1.6E-06 5.4E-11 84.7 13.8 118 249-369 15-134 (477)
175 2dba_A Smooth muscle cell asso 98.4 9E-06 3.1E-10 65.0 15.7 112 274-389 27-142 (148)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 3.7E-06 1.3E-10 81.7 15.0 129 310-441 268-412 (457)
177 4b4t_Q 26S proteasome regulato 98.4 1.4E-05 5E-10 77.2 19.2 197 36-232 11-243 (434)
178 4b4t_Q 26S proteasome regulato 98.4 2.9E-05 1E-09 75.0 21.1 166 208-373 58-244 (434)
179 2xev_A YBGF; tetratricopeptide 98.4 5.1E-06 1.7E-10 64.7 12.4 90 316-408 8-104 (129)
180 1wao_1 Serine/threonine protei 98.4 1.2E-06 3.9E-11 85.6 10.4 118 3-123 15-134 (477)
181 3rkv_A Putative peptidylprolyl 98.4 3.5E-06 1.2E-10 68.9 11.1 64 381-445 64-127 (162)
182 2if4_A ATFKBP42; FKBP-like, al 98.3 1.3E-06 4.5E-11 81.1 9.3 151 275-447 179-331 (338)
183 3rkv_A Putative peptidylprolyl 98.3 6.6E-06 2.2E-10 67.2 12.5 102 312-416 13-131 (162)
184 2xev_A YBGF; tetratricopeptide 98.3 1.3E-05 4.5E-10 62.3 13.7 93 351-446 8-107 (129)
185 1ihg_A Cyclophilin 40; ppiase 98.3 6.1E-06 2.1E-10 77.5 13.5 90 345-437 273-363 (370)
186 1dce_A Protein (RAB geranylger 98.3 2.4E-05 8.4E-10 77.7 18.4 154 289-446 43-223 (567)
187 3k9i_A BH0479 protein; putativ 98.3 1.5E-06 5.1E-11 66.6 7.6 87 6-93 2-90 (117)
188 3k9i_A BH0479 protein; putativ 98.3 8.3E-07 2.8E-11 68.0 5.9 84 324-408 4-89 (117)
189 2hr2_A Hypothetical protein; a 98.3 1.1E-05 3.7E-10 64.1 12.1 96 312-408 13-130 (159)
190 3ro3_A PINS homolog, G-protein 98.3 4.9E-06 1.7E-10 67.7 10.7 133 276-408 10-157 (164)
191 1ihg_A Cyclophilin 40; ppiase 98.3 9.3E-06 3.2E-10 76.3 13.6 122 277-401 225-362 (370)
192 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 9.5E-06 3.2E-10 78.8 14.1 130 275-407 268-413 (457)
193 1dce_A Protein (RAB geranylger 98.3 4.8E-05 1.6E-09 75.6 19.2 173 221-398 45-244 (567)
194 3n71_A Histone lysine methyltr 98.2 2.6E-06 8.8E-11 82.6 8.9 132 354-498 318-463 (490)
195 1klx_A Cysteine rich protein B 98.2 4.1E-05 1.4E-09 60.3 14.2 108 291-409 11-126 (138)
196 2if4_A ATFKBP42; FKBP-like, al 98.2 9.2E-06 3.1E-10 75.4 11.8 149 310-499 179-328 (338)
197 2l6j_A TPR repeat-containing p 98.2 1.5E-06 5.3E-11 65.6 5.1 93 344-439 3-102 (111)
198 1klx_A Cysteine rich protein B 98.2 0.00011 3.9E-09 57.8 15.5 110 324-444 9-126 (138)
199 1zu2_A Mitochondrial import re 98.0 1.9E-05 6.5E-10 62.5 8.0 99 5-107 13-132 (158)
200 1zu2_A Mitochondrial import re 98.0 1.7E-05 5.7E-10 62.9 7.6 53 361-416 62-125 (158)
201 3n71_A Histone lysine methyltr 98.0 5.5E-05 1.9E-09 73.3 12.7 124 320-443 319-463 (490)
202 2kat_A Uncharacterized protein 98.0 3.3E-05 1.1E-09 58.6 9.2 77 364-442 4-80 (115)
203 2l6j_A TPR repeat-containing p 97.9 1E-05 3.5E-10 61.0 5.3 92 310-403 4-101 (111)
204 1na3_A Designed protein CTPR2; 97.9 0.00011 3.9E-09 52.6 10.7 80 346-427 10-89 (91)
205 2kat_A Uncharacterized protein 97.9 9.6E-05 3.3E-09 56.0 10.5 81 11-93 2-82 (115)
206 1na3_A Designed protein CTPR2; 97.9 0.00018 6.1E-09 51.6 10.6 81 310-392 9-89 (91)
207 3qww_A SET and MYND domain-con 97.8 5.6E-05 1.9E-09 71.9 9.0 103 357-459 310-426 (433)
208 3ma5_A Tetratricopeptide repea 97.7 0.00018 6.1E-09 52.9 8.7 62 345-407 7-68 (100)
209 3qwp_A SET and MYND domain-con 97.7 0.00015 5E-09 69.3 10.2 111 352-462 294-418 (429)
210 3ma5_A Tetratricopeptide repea 97.7 0.00018 6.2E-09 52.9 8.5 64 309-373 6-69 (100)
211 2kc7_A BFR218_protein; tetratr 97.5 0.00036 1.2E-08 51.0 7.3 82 351-443 6-89 (99)
212 3qww_A SET and MYND domain-con 97.4 0.00014 4.7E-09 69.3 5.8 94 392-498 310-410 (433)
213 3ly7_A Transcriptional activat 97.4 0.0031 1.1E-07 57.5 13.8 71 344-418 276-346 (372)
214 1pc2_A Mitochondria fission pr 97.4 0.0018 6E-08 50.7 10.1 87 360-448 13-104 (152)
215 3qwp_A SET and MYND domain-con 97.3 0.00054 1.8E-08 65.3 7.8 99 387-498 294-399 (429)
216 3ly7_A Transcriptional activat 97.1 0.0085 2.9E-07 54.7 13.7 65 168-234 275-339 (372)
217 3bee_A Putative YFRE protein; 97.0 0.0073 2.5E-07 43.2 9.9 64 344-408 5-71 (93)
218 3bee_A Putative YFRE protein; 97.0 0.014 4.9E-07 41.7 11.5 69 377-447 3-75 (93)
219 2kc7_A BFR218_protein; tetratr 96.8 0.01 3.4E-07 43.0 9.6 57 317-374 7-64 (99)
220 1pc2_A Mitochondria fission pr 96.8 0.008 2.7E-07 47.0 9.1 90 5-98 9-103 (152)
221 2v5f_A Prolyl 4-hydroxylase su 96.7 0.012 4.1E-07 43.2 9.2 63 346-408 6-74 (104)
222 3mkq_B Coatomer subunit alpha; 96.7 0.098 3.3E-06 42.0 14.7 99 40-160 16-114 (177)
223 3mkq_A Coatomer beta'-subunit; 96.6 0.11 3.9E-06 54.3 19.8 152 40-231 610-762 (814)
224 1nzn_A CGI-135 protein, fissio 96.6 0.012 4.2E-07 44.1 8.4 87 360-448 16-107 (126)
225 2v5f_A Prolyl 4-hydroxylase su 96.5 0.032 1.1E-06 40.8 10.4 66 309-374 4-75 (104)
226 3u64_A Protein TP_0956; tetrat 96.4 0.027 9.3E-07 49.2 10.5 83 361-447 179-272 (301)
227 4ady_A RPN2, 26S proteasome re 96.2 1.5 5.2E-05 45.5 30.9 158 212-373 497-657 (963)
228 3mkq_A Coatomer beta'-subunit; 96.1 0.3 1E-05 51.1 19.3 27 99-125 681-707 (814)
229 3mkq_B Coatomer subunit alpha; 96.1 0.16 5.6E-06 40.7 12.9 130 283-442 13-142 (177)
230 3u64_A Protein TP_0956; tetrat 96.0 0.073 2.5E-06 46.6 11.4 85 291-377 179-272 (301)
231 1wy6_A Hypothetical protein ST 95.8 0.4 1.4E-05 36.1 13.6 59 316-375 97-155 (172)
232 3lvg_A Clathrin heavy chain 1; 95.8 2.5E-06 8.5E-11 79.0 -18.2 201 66-288 56-276 (624)
233 1nzn_A CGI-135 protein, fissio 95.4 0.14 4.9E-06 38.3 9.3 65 343-408 33-102 (126)
234 4h7y_A Dual specificity protei 95.4 0.22 7.4E-06 38.4 10.3 101 308-410 11-124 (161)
235 1wy6_A Hypothetical protein ST 95.3 0.67 2.3E-05 34.9 14.6 62 348-410 94-155 (172)
236 4ady_A RPN2, 26S proteasome re 95.1 3.8 0.00013 42.6 29.8 52 286-338 535-588 (963)
237 4h7y_A Dual specificity protei 94.6 0.25 8.4E-06 38.1 8.8 24 247-270 101-124 (161)
238 3lvg_A Clathrin heavy chain 1; 94.1 0.0095 3.2E-07 55.8 0.1 71 4-82 64-134 (624)
239 4b4t_P 26S proteasome regulato 94.0 4.2 0.00014 38.7 18.3 50 43-92 30-84 (445)
240 1y8m_A FIS1; mitochondria, unk 93.9 1.5 5E-05 33.6 11.8 72 377-448 36-110 (144)
241 3o48_A Mitochondria fission 1 93.6 0.86 2.9E-05 34.3 9.9 72 377-448 37-111 (134)
242 2ff4_A Probable regulatory pro 93.3 0.67 2.3E-05 43.3 11.3 77 348-425 174-255 (388)
243 4gns_B Protein CSD3, chitin bi 92.6 0.87 3E-05 46.2 11.5 54 387-442 344-398 (754)
244 3ffl_A Anaphase-promoting comp 92.3 0.49 1.7E-05 37.3 7.3 126 3-144 29-164 (167)
245 4gns_B Protein CSD3, chitin bi 92.0 1.8 6E-05 44.0 12.8 52 354-406 346-397 (754)
246 3o48_A Mitochondria fission 1 91.7 1.9 6.5E-05 32.5 9.5 72 342-415 37-111 (134)
247 2ff4_A Probable regulatory pro 91.7 1.5 5.1E-05 41.0 11.4 69 68-137 175-247 (388)
248 4fhn_B Nucleoporin NUP120; pro 91.2 7.3 0.00025 42.4 17.5 23 103-125 846-868 (1139)
249 3ffl_A Anaphase-promoting comp 90.9 1.6 5.5E-05 34.4 8.8 134 30-179 21-164 (167)
250 1qsa_A Protein (soluble lytic 90.6 15 0.0005 36.6 26.4 322 74-443 16-347 (618)
251 4fhn_B Nucleoporin NUP120; pro 89.3 15 0.00052 39.9 18.1 147 280-433 817-989 (1139)
252 1y8m_A FIS1; mitochondria, unk 87.8 7.7 0.00026 29.7 12.7 72 342-415 36-110 (144)
253 1qsa_A Protein (soluble lytic 87.8 23 0.00079 35.2 35.3 52 387-441 388-439 (618)
254 4b4t_P 26S proteasome regulato 87.6 19 0.00067 34.1 22.3 94 139-232 141-245 (445)
255 1v54_E Cytochrome C oxidase po 87.5 3.1 0.00011 29.5 7.2 62 45-107 26-87 (109)
256 1zbp_A Hypothetical protein VP 85.7 5.8 0.0002 34.2 9.6 55 38-93 6-60 (273)
257 1v54_E Cytochrome C oxidase po 84.9 8.4 0.00029 27.3 9.7 44 364-407 29-72 (109)
258 1zbp_A Hypothetical protein VP 82.6 23 0.00078 30.5 13.8 118 320-450 7-135 (273)
259 2y69_E Cytochrome C oxidase su 81.6 15 0.00051 27.7 9.7 41 367-407 75-115 (152)
260 4b4t_R RPN7, 26S proteasome re 81.2 11 0.00037 35.6 10.8 98 101-198 133-236 (429)
261 3lpz_A GET4 (YOR164C homolog); 80.9 31 0.0011 31.0 23.3 48 308-359 134-181 (336)
262 2uwj_G Type III export protein 80.6 13 0.00043 26.3 8.3 78 79-165 21-98 (115)
263 4b4t_R RPN7, 26S proteasome re 80.3 22 0.00077 33.5 12.6 98 136-233 132-236 (429)
264 2p58_C Putative type III secre 80.1 13 0.00045 26.2 8.8 78 79-165 22-99 (116)
265 2wpv_A GET4, UPF0363 protein Y 79.6 33 0.0011 30.5 22.0 81 308-407 132-215 (312)
266 2y69_E Cytochrome C oxidase su 78.8 19 0.00064 27.2 9.1 59 258-317 71-129 (152)
267 3esl_A Checkpoint serine/threo 77.7 18 0.00062 29.6 9.3 53 361-413 95-148 (202)
268 3lpz_A GET4 (YOR164C homolog); 77.6 40 0.0014 30.3 21.3 25 239-263 135-159 (336)
269 3ltm_A Alpha-REP4; protein eng 75.9 31 0.0011 28.3 17.4 18 308-325 93-110 (211)
270 2uwj_G Type III export protein 73.9 21 0.0007 25.2 7.5 77 43-127 20-96 (115)
271 2p58_C Putative type III secre 72.9 22 0.00076 25.1 8.3 78 42-127 20-97 (116)
272 3txn_A 26S proteasome regulato 72.7 60 0.0021 30.0 27.0 25 66-90 21-45 (394)
273 4a1g_A Mitotic checkpoint seri 70.1 36 0.0012 26.4 8.9 47 398-444 83-130 (152)
274 3esl_A Checkpoint serine/threo 67.8 49 0.0017 27.0 10.9 56 148-203 92-148 (202)
275 2wvi_A Mitotic checkpoint seri 62.5 55 0.0019 25.8 8.9 44 399-442 79-123 (164)
276 3kae_A CDC27, possible protein 62.1 44 0.0015 26.4 7.8 98 319-444 42-143 (242)
277 2wpv_A GET4, UPF0363 protein Y 61.8 87 0.003 27.8 22.1 135 10-159 13-158 (312)
278 4b4t_S RPN3, 26S proteasome re 55.3 1.3E+02 0.0043 29.0 11.5 64 64-127 231-298 (523)
279 2d2s_A Exocyst complex compone 53.7 72 0.0025 26.9 8.8 89 35-126 24-118 (235)
280 3ltj_A Alpharep-4; protein eng 52.9 89 0.003 25.1 19.1 92 308-408 88-179 (201)
281 4aez_C MAD3, mitotic spindle c 52.5 76 0.0026 26.4 8.4 49 397-445 131-180 (223)
282 4a1g_A Mitotic checkpoint seri 50.2 87 0.003 24.2 10.3 50 154-203 84-134 (152)
283 2d2s_A Exocyst complex compone 50.1 51 0.0018 27.8 7.3 88 2-92 26-119 (235)
284 3ltm_A Alpha-REP4; protein eng 48.9 1.1E+02 0.0036 24.9 18.9 111 62-185 31-141 (211)
285 3txn_A 26S proteasome regulato 48.9 1.7E+02 0.0057 27.1 29.6 92 140-231 104-207 (394)
286 3bu8_A Telomeric repeat-bindin 45.8 1.3E+02 0.0043 24.9 11.6 23 43-65 33-55 (235)
287 4gq2_M Nucleoporin NUP120; bet 42.2 1.7E+02 0.0058 31.0 11.4 131 281-429 816-950 (950)
288 3bu8_A Telomeric repeat-bindin 41.6 1.5E+02 0.0051 24.5 10.7 49 115-163 88-142 (235)
289 2wvi_A Mitotic checkpoint seri 41.3 1.3E+02 0.0044 23.7 10.9 50 154-203 79-129 (164)
290 1bpo_A Protein (clathrin); cla 38.3 2.5E+02 0.0085 26.6 10.2 135 86-231 348-482 (494)
291 4aez_C MAD3, mitotic spindle c 37.8 1.8E+02 0.006 24.3 8.7 51 153-203 132-183 (223)
292 3eiq_C Programmed cell death p 37.4 2.4E+02 0.0081 25.6 10.3 26 172-197 56-81 (358)
293 4b4t_S RPN3, 26S proteasome re 36.9 2.9E+02 0.01 26.5 11.4 65 100-164 232-299 (523)
294 4gq2_M Nucleoporin NUP120; bet 36.7 3.3E+02 0.011 28.8 12.5 48 172-219 899-950 (950)
295 2b7e_A PRE-mRNA processing pro 34.5 28 0.00097 21.7 2.4 30 10-39 2-31 (59)
296 2ijq_A Hypothetical protein; s 33.2 80 0.0027 24.7 5.3 61 31-92 35-103 (161)
297 2xig_A Ferric uptake regulatio 32.4 1.7E+02 0.0058 22.4 7.3 59 55-114 18-76 (150)
298 4ets_A Ferric uptake regulatio 31.9 1E+02 0.0035 24.1 6.0 68 47-115 15-85 (162)
299 2keb_A DNA polymerase subunit 31.7 1.3E+02 0.0046 21.0 7.2 55 364-420 28-87 (101)
300 2ijq_A Hypothetical protein; s 31.1 1.9E+02 0.0065 22.6 8.0 60 67-127 36-103 (161)
301 2fe3_A Peroxide operon regulat 30.9 1.7E+02 0.006 22.1 8.1 59 55-114 13-71 (145)
302 3pvs_A Replication-associated 30.6 3.4E+02 0.012 25.5 13.4 56 217-272 267-327 (447)
303 3eyy_A Putative iron uptake re 30.3 1.4E+02 0.0048 22.7 6.4 57 55-113 10-66 (145)
304 1mzb_A Ferric uptake regulatio 30.2 1.7E+02 0.0059 21.8 7.1 58 55-113 9-67 (136)
305 2w57_A Ferric uptake regulatio 28.6 1.8E+02 0.0062 22.3 6.8 58 55-113 8-66 (150)
306 2f6m_A Suppressor protein STP2 27.9 1.1E+02 0.0037 19.6 4.2 43 349-392 6-48 (65)
307 3bqo_A Telomeric repeat-bindin 27.3 2.5E+02 0.0086 22.8 8.4 20 107-126 125-144 (211)
308 2qx5_A Nucleoporin NIC96; mRNA 27.2 4.8E+02 0.017 26.1 19.5 80 211-301 300-382 (661)
309 2crb_A Nuclear receptor bindin 27.1 1.1E+02 0.0037 21.2 4.4 25 417-441 17-41 (97)
310 4ets_A Ferric uptake regulatio 26.7 2.1E+02 0.0072 22.3 7.0 22 282-303 39-60 (162)
311 2r9g_A AAA ATPase, central reg 26.2 2.7E+02 0.0091 22.7 10.1 18 323-340 27-44 (204)
312 2keb_A DNA polymerase subunit 26.2 1.7E+02 0.0059 20.5 5.8 31 329-359 28-58 (101)
313 3eiq_C Programmed cell death p 26.0 3.7E+02 0.013 24.3 11.5 26 66-91 56-81 (358)
314 3e3v_A Regulatory protein RECX 25.0 2.6E+02 0.0088 22.2 10.2 50 46-96 50-99 (177)
315 2fe3_A Peroxide operon regulat 24.8 2.3E+02 0.0078 21.5 6.8 61 19-80 12-72 (145)
316 2cos_A Serine/threonine protei 24.6 80 0.0027 19.2 3.0 36 401-441 11-48 (54)
317 3pvs_A Replication-associated 23.3 4.7E+02 0.016 24.5 14.2 55 252-306 267-326 (447)
318 1mzb_A Ferric uptake regulatio 23.2 2.4E+02 0.0081 21.1 6.6 60 20-80 9-69 (136)
319 3i5p_A Nucleoporin NUP170; hel 23.1 2.2E+02 0.0076 27.4 7.6 13 12-24 28-40 (525)
320 3bge_A Predicted ATPase; struc 22.7 3.1E+02 0.011 22.3 8.4 22 322-343 19-40 (201)
321 2w57_A Ferric uptake regulatio 21.3 2.7E+02 0.0091 21.3 6.5 61 19-80 7-68 (150)
322 2xig_A Ferric uptake regulatio 21.0 2.8E+02 0.0096 21.1 7.6 61 19-80 17-77 (150)
323 1ya0_A SMG-7 transcript varian 20.9 5.5E+02 0.019 24.5 10.4 78 313-392 155-232 (497)
324 2ion_A PDCD4, programmed cell 20.7 1.7E+02 0.0058 22.6 5.2 84 348-432 12-97 (152)
325 2o03_A Probable zinc uptake re 20.2 1.8E+02 0.0063 21.5 5.3 46 69-114 15-60 (131)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-41 Score=346.36 Aligned_cols=456 Identities=10% Similarity=-0.017 Sum_probs=388.2
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008925 8 GKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIF 87 (548)
Q Consensus 8 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 87 (548)
|.+..+...+..+ +.++...|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|+.+|
T Consensus 67 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 67 GSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 4444444444432 3467889999999999999999999999999864 578889999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCC--------------CCCCCHHHHHHHHHHHHhCCCHHH
Q 008925 88 QKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDK--------------NVKPNDRTYNILVRAWCSKNSIEE 153 (548)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~ 153 (548)
+++... +++..+++.++.+|.+.|++++|+++|+++.... +.+++..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 998654 6789999999999999999999999998643321 223458899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH--------------------------------------HHHHHhcCCHHHHHHHHHH
Q 008925 154 AWNVVYKMVASGIQPDAVTYNTL--------------------------------------ARAYAQYGETYRAEQMLFE 195 (548)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~~~g~~~~a~~~~~~ 195 (548)
|+++|+++.+.+ +.+...+..+ +..|.+.|++++|.++|++
T Consensus 219 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 219 AKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 999999999864 2334443333 4455678899999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCH
Q 008925 196 MQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDV 275 (548)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 275 (548)
+.+. +++..++..++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+.
T Consensus 298 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 298 INGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp STTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred hhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 8765 4789999999999999999999999999998765 5578899999999999999999999999998765 4578
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGW 355 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 355 (548)
.++..++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 899999999999999999999999999875 6678899999999999999999999999999864 44788999999999
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcC
Q 008925 356 CNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK----GVRPK--KSTIQLVADSWRAIG 429 (548)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g 429 (548)
.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+. +..|+ ..++..++.+|.+.|
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 99999999999999999875 678999999999999999999999999999865 66787 679999999999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccccccccccccccccccCCCChhhhhhhhhhccc
Q 008925 430 LAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAAKIRSQIVLRS 500 (548)
Q Consensus 430 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~~~ 500 (548)
++++|+++++++.+.. |.+...|..++.+|...|+|++|.+..+++...+
T Consensus 531 ~~~~A~~~~~~~~~~~---------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLS---------------------TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHHS---------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC---------------------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999976433 4456678889999999999999999999987766
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-40 Score=340.75 Aligned_cols=430 Identities=9% Similarity=-0.007 Sum_probs=378.6
Q ss_pred ccccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 008925 2 NILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVD 81 (548)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 81 (548)
..+.+.|++++|+.+|++++.. .|+..++..++.++.+.|++++|+.+|+++... +++..+++.++.+|.+.|+++
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 167 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQ 167 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHH
Confidence 3567899999999999999864 467789999999999999999999999998653 778999999999999999999
Q ss_pred HHHHHHHHHHhc---------------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHH-----
Q 008925 82 EAMKIFQKMKDS---------------GCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNIL----- 141 (548)
Q Consensus 82 ~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l----- 141 (548)
+|+++|+++... +.+++..+|+.++.+|.+.|++++|+++|+++.+.. +.+...+..+
T Consensus 168 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTC
T ss_pred HHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhc
Confidence 999999954321 223357899999999999999999999999998753 2334443333
Q ss_pred ---------------------------------HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008925 142 ---------------------------------VRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYR 188 (548)
Q Consensus 142 ---------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 188 (548)
+..|.+.|++++|.++|+++.+. +++..+++.++..|.+.|++++
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHH
Confidence 44556778999999999998875 5899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 008925 189 AEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEE 268 (548)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 268 (548)
|.++|+++.+.++. +..++..++.++.+.|++++|..+++++.... +.+..++..++..|.+.|++++|.++|+.+.+
T Consensus 324 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 324 VLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999987644 78889999999999999999999999998754 66789999999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 008925 269 FGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMF 348 (548)
Q Consensus 269 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 348 (548)
.. +.+..+++.++.++.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|
T Consensus 402 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 478 (597)
T 2xpi_A 402 MD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLL 478 (597)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 65 3468899999999999999999999999999876 6788999999999999999999999999998864 3478899
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEI----GINPN--LKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVA 422 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 422 (548)
+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..++..++
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 557 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 99999999999999999999999986 55777 7899999999999999999999999999764 34678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcc
Q 008925 423 DSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
.+|.+.|++++|.++++++.+.+
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999987554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.6e-30 Score=250.57 Aligned_cols=381 Identities=10% Similarity=0.050 Sum_probs=278.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 008925 36 VAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKP 115 (548)
Q Consensus 36 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 115 (548)
+..+.+.|++++|++.++++.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..++.++...|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 445566677777777777766652 4445556666666677777777777777666553 44566677777777777777
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008925 116 EESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFE 195 (548)
Q Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 195 (548)
++|+..|+++.... |.+...|..++.++...|++++|.+.|+++++.. +.+...+..+...+...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77777777766542 3345567777777777777777777777776653 33455566677777777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCH
Q 008925 196 MQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDV 275 (548)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 275 (548)
+.+..+. +..++..++..+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+..+ .+.
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~ 237 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCH
Confidence 7665332 56777777777888888888888888877754 44567777888888888888888888888777643 356
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGW 355 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 355 (548)
.++..+..++...|++++|...++++++.+ +.+..++..++.++.+.|++++|...|+++.+.. +.+..++..++..+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 778888888888888888888888888775 5567788888888888888888888888888753 45677888888888
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 008925 356 CNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIG 429 (548)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 429 (548)
...|++++|+..|+++++.. |.+..++..++.+|.+.|++++|...++++.+. .|+ ...+..++.++...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 88888888888888888764 556778888888888888888888888888864 454 447777777766655
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1e-30 Score=251.85 Aligned_cols=381 Identities=13% Similarity=0.048 Sum_probs=337.0
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+.+.|++++|+..|+.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 356889999999999999987543 67788888999999999999999999998874 6688899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMV 162 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (548)
|+..|+++.+.. +.+..+|..++.++...|++++|++.|+++.... |.+...+..+...+...|++++|.+.|+++.
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999998863 4456789999999999999999999999998752 4456778889999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008925 163 ASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVV 242 (548)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 242 (548)
+.. +.+..+|..++..+...|++++|...|+++.+..+. +...+..+...+...|++++|+..|+++.... +.+..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 874 456889999999999999999999999999887544 67889999999999999999999999998864 556889
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008925 243 FNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR 322 (548)
Q Consensus 243 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (548)
+..++..+...|++++|...++.+.+..+ .++.++..++.++...|++++|...++++++.. +.+..++..++..+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 99999999999999999999999998753 367889999999999999999999999999885 7788999999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008925 323 AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQ 395 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (548)
.|++++|...++++.+.. +.+..++..++..+.+.|++++|...|+++++.. |.+...|..+...+...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 999999999999999863 3457789999999999999999999999999864 5567888888888776653
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.7e-28 Score=239.98 Aligned_cols=212 Identities=17% Similarity=0.249 Sum_probs=130.1
Q ss_pred HHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 008925 190 EQMLFEMQNNQVRPNE-RTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEE 268 (548)
Q Consensus 190 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 268 (548)
..+.+.+.+.+..+.+ ..++.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|...+....+
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------- 80 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------- 80 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------
Confidence 3344444444433322 234555555555555555555555555555555555555555555544332110
Q ss_pred cCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 008925 269 FGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMF 348 (548)
Q Consensus 269 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 348 (548)
...+.++.|.++|++|...|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 81 -----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 81 -----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred -----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 011235667777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRA 427 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 427 (548)
+.+|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++.|+.++|.+++++|.+.++.|+..|+..+...+..
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777766666654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.4e-28 Score=237.81 Aligned_cols=206 Identities=15% Similarity=0.179 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------H
Q 008925 152 EEAWNVVYKMVASGIQPDA-VTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGN---------M 221 (548)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 221 (548)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777665544 46888999999999999999999999999999999999999999987664 5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 008925 222 EDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDM 301 (548)
Q Consensus 222 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (548)
++|.++|++|...|+.||..+|++++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 66677777776666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 008925 302 VKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN 357 (548)
Q Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 357 (548)
.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.+..|+..||+.++..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.7e-26 Score=229.82 Aligned_cols=405 Identities=9% Similarity=0.001 Sum_probs=279.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 008925 31 TYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYG 110 (548)
Q Consensus 31 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (548)
.+...+..+.+.|++++|+..|+++.+.. |+..++..+..++.+.|++++|+..|+++.+.+ +.+..++..++.++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 44455555555555555555555555542 455555555555555555555555555555542 233445555555555
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH--------------------------------
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVV-------------------------------- 158 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-------------------------------- 158 (548)
..|++++|+..|+++.... +++......++..+........+.+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 5555555555555554432 222222222222222211111111111
Q ss_pred ---HHHHHCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHH
Q 008925 159 ---YKMVASGI---------QPDAVTYNTLARAYAQ---YGETYRAEQMLFEMQN-----NQV--------RPNERTCGI 210 (548)
Q Consensus 159 ---~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ 210 (548)
..+..... +.+...+..+...+.. .|++++|...++++.+ ... +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 00000000 1124445555555554 8899999999998887 311 123556778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 008925 211 IVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGL 290 (548)
Q Consensus 211 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 290 (548)
++..+...|++++|...|+++.+.. |+...+..++..+...|++++|...++.+.+..+ .+...+..+..++...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999998865 3388888899999999999999999999888753 356788889999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 008925 291 MGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEK 370 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 370 (548)
+++|...++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...|++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999875 5567788899999999999999999999988753 33567888899999999999999999999
Q ss_pred HHHcCCCCC------HHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 371 MCEIGINPN------LKTYETLLWGYGE---AKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 371 ~~~~~~~~~------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
+.+.. +.+ ...+..++.++.. .|++++|...++++.+.. +.+..++..++.++...|++++|...++++
T Consensus 398 a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 398 AIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 98753 222 3488889999999 999999999999998753 334568888999999999999999999998
Q ss_pred HhccCC
Q 008925 442 EEDRQS 447 (548)
Q Consensus 442 ~~~~~~ 447 (548)
.+..|.
T Consensus 476 ~~~~~~ 481 (514)
T 2gw1_A 476 ADLART 481 (514)
T ss_dssp HHHCSS
T ss_pred HHhccc
Confidence 877654
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.2e-26 Score=229.28 Aligned_cols=402 Identities=10% Similarity=0.013 Sum_probs=323.7
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+.+.|++++|+..|+++++.+ |+..+|..++.++.+.|++++|+..++++.+.+ +.+..++..++.++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHH
Confidence 4678999999999999999975 689999999999999999999999999999875 5577899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh----------------------------------hhC
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLM----------------------------------SQD 128 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------------------~~~ 128 (548)
|...|+++...+ +++......++..+........+.+.+..+ ...
T Consensus 92 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 92 AMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 999999999875 334333333333333222111111111000 000
Q ss_pred CCC---------CCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHhc
Q 008925 129 KNV---------KPNDRTYNILVRAWCS---KNSIEEAWNVVYKMVA-----SGI--------QPDAVTYNTLARAYAQY 183 (548)
Q Consensus 129 ~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~ 183 (548)
... +.+...+......+.. .|++++|+..|+++.+ ..- +.+..++..++..+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 000 1124455555555554 8999999999999988 311 22356788899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHH
Q 008925 184 GETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKAL 263 (548)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 263 (548)
|++++|...++++.+..+. ..++..++.++...|++++|...++++.... +.+..++..+...+...|++++|...+
T Consensus 251 ~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999887544 8888999999999999999999999998865 556788999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-
Q 008925 264 TLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVH- 342 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 342 (548)
+.+.+..+. +...+..+...+...|++++|...++.+.+.. +.+..++..++..+...|++++|...++++.+....
T Consensus 328 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 328 DKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 999987543 56788889999999999999999999999875 567788999999999999999999999998764211
Q ss_pred CC----HHHHHHHHHHHhc---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008925 343 PN----VVMFTTVISGWCN---AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK 415 (548)
Q Consensus 343 p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 415 (548)
++ ...+..++..+.. .|++++|...|+++.+.. +.+..++..++.+|...|++++|...|+++.+. .|+.
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 11 3388999999999 999999999999999875 667889999999999999999999999999985 4665
Q ss_pred H
Q 008925 416 S 416 (548)
Q Consensus 416 ~ 416 (548)
.
T Consensus 483 ~ 483 (514)
T 2gw1_A 483 E 483 (514)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.6e-24 Score=213.15 Aligned_cols=367 Identities=13% Similarity=0.086 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 008925 47 SILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMS 126 (548)
Q Consensus 47 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 126 (548)
.+...+..+.... +.+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..++.++...|++++|+..|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444432 4456677777777778888888888888777652 4466777777777777888888888877776
Q ss_pred hCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008925 127 QDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDA---VTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP 203 (548)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 203 (548)
+.. +.+...+..++.++...|++++|...|+++.+.. +.+. ..+..++..+..
T Consensus 88 ~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~--------------------- 143 (450)
T 2y4t_A 88 QLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM--------------------- 143 (450)
T ss_dssp HHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH---------------------
T ss_pred hcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH---------------------
Confidence 642 4456677777777777777777777777777653 2223 445545443211
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 204 NERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMD 283 (548)
Q Consensus 204 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (548)
..+..+...+...|++++|+..|+++.+.. +.+..++..++..|...|++++|...++.+.+.. +.+..++..++.
T Consensus 144 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 219 (450)
T 2y4t_A 144 --QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIST 219 (450)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 112234455677888888888888887754 5567788888888888888888888888887764 346778888888
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHHcCCHhHHHHHHHHHHhCCCCCC-----HH
Q 008925 284 AWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSIL------------AKGYVRAGEPQKAESILTSMRKYGVHPN-----VV 346 (548)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~ 346 (548)
++...|++++|...++++.+.. +.+...+..+ +..+...|++++|...|+++.+. .|+ ..
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~ 296 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVR 296 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHH
Confidence 8888888888888888888764 4455555554 78889999999999999999874 344 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADS- 424 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~- 424 (548)
.+..++..+.+.|++++|+..++++++.. +.+..+|..++.+|...|++++|...++++.+. .|+ ...+..++.+
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence 67888899999999999999999998874 567889999999999999999999999999874 455 4466666633
Q ss_pred -----------HHHcC-----CHHHHHHHHHH-HHhccCCCC
Q 008925 425 -----------WRAIG-----LAREAKRVLKS-AEEDRQSMP 449 (548)
Q Consensus 425 -----------~~~~g-----~~~~A~~~~~~-~~~~~~~~~ 449 (548)
+...| ..+++.+.+++ +.+..|...
T Consensus 374 ~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 33334 55667777775 445544433
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.6e-24 Score=213.12 Aligned_cols=318 Identities=11% Similarity=0.032 Sum_probs=206.8
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008925 11 HEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKM 90 (548)
Q Consensus 11 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 90 (548)
..+...+..+....+ .+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|+..|+++
T Consensus 9 ~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQSM-ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------C-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345556666666543 367889999999999999999999999998863 567889999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCH---HHHHHH------------HHHHHhCCCHHHHH
Q 008925 91 KDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPND---RTYNIL------------VRAWCSKNSIEEAW 155 (548)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~ 155 (548)
.+.+ +.+..++..++.+|...|++++|+..|+++.... +.+. ..+..+ +..+...|++++|+
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9874 4568899999999999999999999999998752 3333 555555 34477778888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008925 156 NVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELE 235 (548)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 235 (548)
..|+++.+.. +.+..++..++.+|...|++++|.+.|+++.+... .+..++..++.+|...|++++|+..|+++....
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888877654 44667777777888888888888888877766533 356777777777777888888888887777643
Q ss_pred CCCCHHHHHHH------------HHHHHcCCChhhHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCChhHHHHHHH
Q 008925 236 VHPNLVVFNSL------------IKGFLDIKDSDGVDKALTLMEEFGVKPD----VVTFSTIMDAWSSAGLMGKCQEIFD 299 (548)
Q Consensus 236 ~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (548)
+.+...+..+ +..+...|++++|...++.+.+..+. + ...+..+..++.+.|++++|...++
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2333333333 44444445555555555444443211 1 1234444444444444444444444
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 300 DMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
.+++.. +.+..++..++.+|...|++++|...++++.+
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444432 33344444444444444444444444444444
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=1e-24 Score=219.69 Aligned_cols=405 Identities=11% Similarity=0.060 Sum_probs=294.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGY 109 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (548)
..+..++..+.+.|++++|+..|+++.+.. +.+...+..+..+|.+.|++++|++.|+++.+.. +.+..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 456667777777777777777777777653 4466677777777777777777777777776653 34566677777777
Q ss_pred hccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------CCCCHH------------
Q 008925 110 GNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASG------IQPDAV------------ 171 (548)
Q Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~------------ 171 (548)
...|++++|+..|+.+.. .|+.. ...+..+...+...+|...++++.... ..|+..
T Consensus 104 ~~~g~~~~A~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSL----NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHcCCHHHHHHHHHHHhc----CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 777777777777753322 12211 112223334444455666666654320 011111
Q ss_pred ------------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhc
Q 008925 172 ------------------TYNTLARAYA--------QYGETYRAEQMLFEMQNNQVRPNE-------RTCGIIVSGYCKE 218 (548)
Q Consensus 172 ------------------~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 218 (548)
....+...+. ..|++++|..+++++.+..+. +. .++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 1222222221 235789999999999876443 32 3566777888999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 008925 219 GNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIF 298 (548)
Q Consensus 219 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (548)
|++++|...|+++.... |+...+..+...+...|++++|...++.+.+..+ .+..++..+...+...|++++|...+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999998864 5588899999999999999999999999988763 36788999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC---
Q 008925 299 DDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG--- 375 (548)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 375 (548)
+++++.. +.+..++..++.++...|++++|...++++.+.. +.+...+..++..+...|++++|...|+++.+..
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 9999875 5667889999999999999999999999998864 3456788999999999999999999999998742
Q ss_pred --CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 376 --INPNLKTYETLLWGYGEA----------KQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 376 --~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
.......+..+..++... |++++|+..++++.+.. +.+...+..++.++...|++++|.+.++++.+
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111223355566778887 99999999999998753 33466899999999999999999999999998
Q ss_pred ccCCCC
Q 008925 444 DRQSMP 449 (548)
Q Consensus 444 ~~~~~~ 449 (548)
..|..+
T Consensus 491 ~~~~~~ 496 (537)
T 3fp2_A 491 LARTMD 496 (537)
T ss_dssp HC--CH
T ss_pred hCCCcH
Confidence 877654
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=3.1e-24 Score=216.12 Aligned_cols=393 Identities=12% Similarity=0.103 Sum_probs=310.0
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+.+.|++++|+..|+.+++..+. +..++..++.++.+.|++++|++.|+++.+.+ +.+...+..+..++...|++++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 467899999999999999998644 78999999999999999999999999999875 5678899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCC-----CCCCCHH---------------------
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDK-----NVKPNDR--------------------- 136 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~--------------------- 136 (548)
|+..|+.+ .. .|+. ....+..+...+...+|...++.+.... ...|+..
T Consensus 112 A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 99999743 32 2222 2223344455556677888888775421 0112211
Q ss_pred ---------HHHHHHHHHH--------hCCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHH
Q 008925 137 ---------TYNILVRAWC--------SKNSIEEAWNVVYKMVASGIQPD-------AVTYNTLARAYAQYGETYRAEQM 192 (548)
Q Consensus 137 ---------~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~ 192 (548)
....+...+. ..|++++|+.+++++.+.. +.+ ..++..+...+...|++++|...
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 1122222221 1247899999999998864 223 23577778889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC
Q 008925 193 LFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK 272 (548)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 272 (548)
++.+.+.. |+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+..+.
T Consensus 266 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 266 LQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp HHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 99998864 457888999999999999999999999998865 567889999999999999999999999999987633
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-----CCCHHH
Q 008925 273 PDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGV-----HPNVVM 347 (548)
Q Consensus 273 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~ 347 (548)
+...+..+..++...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+... ......
T Consensus 343 -~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 420 (537)
T 3fp2_A 343 -NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420 (537)
T ss_dssp -CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence 56788899999999999999999999999885 66788999999999999999999999999876421 112223
Q ss_pred HHHHHHHHhcc----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 348 FTTVISGWCNA----------VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 348 ~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
+..+...+... |++++|+..|+++.+.. +.+..++..++.+|...|++++|...|+++.+.
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45556677777 99999999999999875 667899999999999999999999999999985
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=4.8e-20 Score=182.75 Aligned_cols=364 Identities=13% Similarity=0.035 Sum_probs=285.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 008925 13 AHYIFNCLIEEGHRPTLITYTTLVAALTR----QKRFKSILSLISKVEKDGMKPDSILFNAMINACSE----SGNVDEAM 84 (548)
Q Consensus 13 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 84 (548)
++..+....+. .+..++..+...+.. .+++++|...|++..+.| ++..+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 45556655554 367778888888877 788899999998888764 56677788888887 88899999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----CCCHHHHHH
Q 008925 85 KIFQKMKDSGCKPTTSTYNTLIKGYGN----VGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCS----KNSIEEAWN 156 (548)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~ 156 (548)
+.|++..+.| ++..+..|...|.. .+++++|+..|++.... .+...+..+...|.. .++.++|++
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999888764 66777778888877 77889999998888764 366777888888877 778889999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 008925 157 VVYKMVASGIQPDAVTYNTLARAYAQ----YGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCK----EGNMEDAMRFL 228 (548)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 228 (548)
+|++..+.| +...+..|...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|..+|
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 998888864 67778888888887 788889999888887764 56677778877776 78888999988
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-----CChhHHHHHHH
Q 008925 229 YRMKELEVHPNLVVFNSLIKGFLD----IKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSA-----GLMGKCQEIFD 299 (548)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~ 299 (548)
++..+.+ +...+..+...|.. .+++++|...++...+.+ ++..+..+...+... +++++|...++
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 8888753 55667777777776 788888888888887754 455667777777776 78888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHH
Q 008925 300 DMVKAGIEPDIHVFSILAKGYVRAG---EPQKAESILTSMRKYGVHPNVVMFTTVISGWCN----AVKMQRAMSIYEKMC 372 (548)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 372 (548)
+..+.+ +...+..+...|...| ++++|+..|++..+.+ +...+..+...|.. .+++++|...|+++.
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 888764 4567777888777766 7788888888888753 56777888888877 788888988888888
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 008925 373 EIGINPNLKTYETLLWGYGE----AKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 410 (548)
+.+ +...+..|...|.. .+++++|..+|++..+.+
T Consensus 395 ~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 395 EQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred hCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 864 56777888888887 788888888888888765
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=4.5e-21 Score=182.21 Aligned_cols=339 Identities=13% Similarity=0.062 Sum_probs=170.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
++..+..++..+...|++++|+..|+++.+.. +.+..++..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566677777777777777777777776653 4456677777777777777777777777776653 335566677777
Q ss_pred HHhccCChHHHHHHHHHhhhCCCCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008925 108 GYGNVGKPEESLKLLQLMSQDKNVKP----NDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQY 183 (548)
Q Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (548)
++...|++++|+..|+++... .| +...+..+..... ...+..++..+...
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHc
Confidence 777777777777777776653 23 2233333211100 00112223344444
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHH
Q 008925 184 GETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKAL 263 (548)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 263 (548)
|++++|.+.++++.+..+. +..++..+..++...|++++|...++++.... +.+..++..+...+...|++++|...+
T Consensus 134 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4555555544444443221 34444444444444555555555554444432 233344444444444444444444444
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 008925 264 TLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP 343 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 343 (548)
+...+..+. +...+..+.. +. .......++..+...|++++|...++++.+.. |
T Consensus 212 ~~a~~~~~~-~~~~~~~~~~-----------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~ 265 (359)
T 3ieg_A 212 RECLKLDQD-HKRCFAHYKQ-----------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--P 265 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHhhCcc-chHHHHHHHH-----------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C
Confidence 444433211 1111111000 00 00111122444555555555555555555432 2
Q ss_pred C-H----HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHH
Q 008925 344 N-V----VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KST 417 (548)
Q Consensus 344 ~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 417 (548)
+ . ..+..++..+...|++++|+..++++.+.. +.+..++..++.++...|++++|...|+++.+. .|+ ...
T Consensus 266 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~ 342 (359)
T 3ieg_A 266 SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQI 342 (359)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHH
T ss_pred CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHH
Confidence 2 1 123344555555666666666666665543 345555666666666666666666666666553 233 334
Q ss_pred HHHHHHHH
Q 008925 418 IQLVADSW 425 (548)
Q Consensus 418 ~~~l~~~~ 425 (548)
+..+..+.
T Consensus 343 ~~~l~~~~ 350 (359)
T 3ieg_A 343 REGLEKAQ 350 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=7.9e-21 Score=180.49 Aligned_cols=331 Identities=15% Similarity=0.106 Sum_probs=209.3
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+...|++++|+..|+.+++..+. +..++..++.++...|++++|+..++++.+.. +.+...+..+...+...|++++
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHH
Confidence 467899999999999999997544 78899999999999999999999999999874 5577899999999999999999
Q ss_pred HHHHHHHHHhcCCCC----CHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKP----TTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVV 158 (548)
Q Consensus 83 A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 158 (548)
|...|+++.+. .| +...+..+...+. ...+..++..+...|++++|+..+
T Consensus 90 A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 90 AEDDFKKVLKS--NPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp HHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhc--CCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999886 34 3344444422111 112334455666777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008925 159 YKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHP 238 (548)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 238 (548)
+++.+.. +.+...+..++.++...|++++|...++.+.+..+. +..++..++..+...|++++|...|+++.+.. +.
T Consensus 144 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~ 220 (359)
T 3ieg_A 144 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QD 220 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc
Confidence 7776653 445666777777777777777777777777665432 56677777777777777777777777776643 22
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----HHH
Q 008925 239 NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIH----VFS 314 (548)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~ 314 (548)
+...+..+... . .......+...+...|++++|...++++.+.. +.+.. .+.
T Consensus 221 ~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 276 (359)
T 3ieg_A 221 HKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKE 276 (359)
T ss_dssp CHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHH
T ss_pred chHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHH
Confidence 22222211110 0 01112223344455555555555555555442 22221 233
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 315 ILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 315 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
.+..++...|++++|...++++.+.. +.+..++..++..+...|++++|...|+++++.. |.+...+..+..+.
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 44555555555666655555555532 2244455555555555566666666666655543 33344444444443
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=4.3e-19 Score=175.89 Aligned_cols=365 Identities=13% Similarity=0.065 Sum_probs=313.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc----cCChHHH
Q 008925 47 SILSLISKVEKDGMKPDSILFNAMINACSE----SGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGN----VGKPEES 118 (548)
Q Consensus 47 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 118 (548)
.+...++...+.| ++..+..+...|.. .+++++|...|++..+.| ++..+..|...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455666665543 77888888888888 899999999999998864 67788889999988 8999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 008925 119 LKLLQLMSQDKNVKPNDRTYNILVRAWCS----KNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQ----YGETYRAE 190 (548)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 190 (548)
+..|++.... .+...+..+...|.. .+++++|+.+|++..+.| +...+..|...|.. .+++++|.
T Consensus 99 ~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 99 VIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 9999999764 367888889999988 889999999999999875 67788889999987 88999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhhHHHH
Q 008925 191 QMLFEMQNNQVRPNERTCGIIVSGYCK----EGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLD----IKDSDGVDKA 262 (548)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 262 (548)
+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|...
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998864 67888999999988 899999999999999854 66788888888876 7899999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCHhHHHHHH
Q 008925 263 LTLMEEFGVKPDVVTFSTIMDAWSS----AGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRA-----GEPQKAESIL 333 (548)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~ 333 (548)
++...+.+ +...+..+...+.. .++.++|...|+++.+.+ +...+..|...|... +++++|+..+
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 99988864 55677778888887 899999999999998764 567888889999887 8999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHH
Q 008925 334 TSMRKYGVHPNVVMFTTVISGWCNAV---KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE----AKQPWRAEELLQVM 406 (548)
Q Consensus 334 ~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 406 (548)
++..+.+ +...+..+...|...| +.++|+++|+++.+.+ +...+..|...|.. .+++++|..+|++.
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999864 5667888888887756 8999999999999964 78889999999998 89999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcc
Q 008925 407 EEKGVRPKKSTIQLVADSWRA----IGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 407 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 445 (548)
.+.+ +...+..++.++.. .+++++|..+++++.+.+
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9864 57788889999988 899999999999987655
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=1.3e-19 Score=181.47 Aligned_cols=421 Identities=10% Similarity=0.035 Sum_probs=311.3
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 008925 17 FNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCK 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 96 (548)
|+..++..+. +..+|..++.. .+.|++++|..+|+++.+. .|.+...|..++..+.+.|++++|..+|++++.. .
T Consensus 2 le~al~~~P~-~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhCCC-CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 5666666544 78899999984 7889999999999999987 4667889999999999999999999999999986 4
Q ss_pred CCHHHHHHHHHHH-hccCChHHHHH----HHHHhhhCCCCC-CCHHHHHHHHHHHHh---------CCCHHHHHHHHHHH
Q 008925 97 PTTSTYNTLIKGY-GNVGKPEESLK----LLQLMSQDKNVK-PNDRTYNILVRAWCS---------KNSIEEAWNVVYKM 161 (548)
Q Consensus 97 ~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~~~~~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~ 161 (548)
|+...|..++... ...|+.++|.+ +|++.....|.. ++...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6888888777533 34577776655 777765543333 456778887776655 68899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHH------HhCC---CCCC--------HHHHHHH
Q 008925 162 VASGIQPDAVTYNTLARAY-------------AQYGETYRAEQMLFEM------QNNQ---VRPN--------ERTCGII 211 (548)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l 211 (548)
++.........|....... ...+++..|..+++.+ .+.. ++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8831111123443332211 1234567777777652 2221 2333 2344444
Q ss_pred HHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------CCChh-------hHHHHHHHHHHc
Q 008925 212 VSGYCKE----GNM----EDAMRFLYRMKELEVHPNLVVFNSLIKGFLD-------IKDSD-------GVDKALTLMEEF 269 (548)
Q Consensus 212 ~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 269 (548)
+...... ++. ..+..+|++++... +.++..|..++..+.. .|+++ +|..+++...+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 4332221 232 47788999988753 5678889988888875 78887 899999999863
Q ss_pred CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 008925 270 GVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDI-HVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMF 348 (548)
Q Consensus 270 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 348 (548)
-.+.+...+..++..+.+.|++++|..+|+++++.. +.+. .+|..++..+.+.|++++|..+|+++.+.. +.+...+
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 223467889999999999999999999999999873 3343 589999999999999999999999999853 2233333
Q ss_pred HHHHHH-HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHH
Q 008925 349 TTVISG-WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG-VRPK--KSTIQLVADS 424 (548)
Q Consensus 349 ~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~ 424 (548)
...+.. +...|+.++|..+|+++++.. |.+...|..++..+.+.|+.++|..+|++++..+ ..|+ ...|..++..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 332222 346899999999999999874 5678999999999999999999999999999763 2332 3478888888
Q ss_pred HHHcCCHHHHHHHHHHHHhccC
Q 008925 425 WRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 425 ~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
....|+.+.+.++.+++.+..|
T Consensus 473 e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHcCCHHHHHHHHHHHHHHCc
Confidence 8899999999999999886655
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=2.8e-20 Score=174.56 Aligned_cols=292 Identities=11% Similarity=0.018 Sum_probs=197.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008925 132 KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGII 211 (548)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 211 (548)
+.+...+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+..+. +...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 3444555666666666677777777777766653 334455555666666777777777777776665332 55666666
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 008925 212 VSGYCKEG-NMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGL 290 (548)
Q Consensus 212 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 290 (548)
...+...| ++++|...|+++.... +.+...|..+...+...|++++|...++.+.+..+. +...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 77777777 7777777777776653 344566777777777777777777777777665432 34555567777777788
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHhccCChH
Q 008925 291 MGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYG--------VHPNVVMFTTVISGWCNAVKMQ 362 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~ 362 (548)
+++|...++++.+.. +.+..++..++..+...|++++|...++++.+.. .+.+..++..++..+...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888777664 5566777777788888888888888887776531 1223457777788888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HHcCCH
Q 008925 363 RAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-KKSTIQLVADSW-RAIGLA 431 (548)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~ 431 (548)
+|...|+++.+.. +.+...+..++.++...|++++|...++++.+. .| +...+..++.++ ...|+.
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCch
Confidence 8888888887764 556677778888888888888888888877663 34 344666666666 344543
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=3.8e-20 Score=173.66 Aligned_cols=263 Identities=10% Similarity=-0.012 Sum_probs=106.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC
Q 008925 69 AMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSK 148 (548)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (548)
.+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.... +.+...+..+...+...
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHh
Confidence 33333333444444444444443321 1122233333333344444444444444433321 22233334444444444
Q ss_pred C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008925 149 N-SIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRF 227 (548)
Q Consensus 149 g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 227 (548)
| ++++|...|+++.+.. +.+...+..++..+...|++++|...++++.+.... +...+..+...+...|++++|...
T Consensus 104 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp CSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4 4444444444444332 222333444444444444444444444444333211 223333344444444444444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 008925 228 LYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFG--------VKPDVVTFSTIMDAWSSAGLMGKCQEIFD 299 (548)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 299 (548)
++++.+.. +.+..++..++..+...|++++|...++.+.+.. .+....++..+..++...|++++|...++
T Consensus 182 ~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 182 FSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 44444332 2223333334444444444444444443333221 01122344444445555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 300 DMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
++++.. +.+..++..++.++...|++++|...++++.+
T Consensus 261 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 261 QALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 554443 33344444445555555555555555554444
No 20
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=8.8e-20 Score=180.37 Aligned_cols=361 Identities=14% Similarity=0.024 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-
Q 008925 135 DRTYNILVRAWCSKNSIEEAWNVVYKMVAS--------GIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNN-----Q- 200 (548)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~- 200 (548)
...|+.++..+...|+.++|++.|++.++. ..+....+|+.+..+|...|++++|...++++.+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666666666666666666666665431 11223456666777777777777777766665431 0
Q ss_pred -CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHcCCChhhHHHHHHHHHHcCCCCC
Q 008925 201 -VRPNERTCGIIVSGYCK--EGNMEDAMRFLYRMKELEVHPNLVVFNSLIKG---FLDIKDSDGVDKALTLMEEFGVKPD 274 (548)
Q Consensus 201 -~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 274 (548)
......++..+..++.. .+++++|+..|+++++.. |.++..+..+... +...++.++|++.+++..+..+ .+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cc
Confidence 01123445555444443 345777777777776653 3344444444443 2344666677777777666542 24
Q ss_pred HHHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 008925 275 VVTFSTIMDAWSS----AGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTT 350 (548)
Q Consensus 275 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 350 (548)
...+..+...+.. .+++++|..+++++.... +.+..++..++..|...|++++|...++++.+.. +.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 4555555444433 346667777777777664 5566677777777777777777777777777642 223445555
Q ss_pred HHHHHhc-------------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008925 351 VISGWCN-------------------AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGV 411 (548)
Q Consensus 351 l~~~~~~-------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (548)
++.+|.. .+..++|...|+++.+.. +.+..++..++..|...|++++|+..|++.++...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 5554432 234677888888888865 55667788899999999999999999999988543
Q ss_pred CCCHH--HHHHHHHH-HHHcCCHHHHHHHHHHHHhccCCCCCc-chhHHHHHHHh--hccccccccccccccccccccCC
Q 008925 412 RPKKS--TIQLVADS-WRAIGLAREAKRVLKSAEEDRQSMPNK-KDEIAVESIHR--KQNLSASNSTFLQIPGVVSSEHN 485 (548)
Q Consensus 412 ~p~~~--~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~--~~~~~~~~~~~~~l~~~y~~~~~ 485 (548)
.|... .+..++.. ....|++++|+..++++.+..|..... ........+.. +..+|.++..+..||.+|...|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~ 445 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK 445 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33221 23344433 356789999999999999887765321 11111222222 34567788889999999999999
Q ss_pred CChhhhhhhhhhccc
Q 008925 486 GSSAAKIRSQIVLRS 500 (548)
Q Consensus 486 ~~~a~~~~~~~~~~~ 500 (548)
+++|.+.+++.++.+
T Consensus 446 ~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 446 MQQADEDSERGLESG 460 (472)
T ss_dssp CC-------------
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998766
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=3.2e-20 Score=177.07 Aligned_cols=308 Identities=11% Similarity=0.029 Sum_probs=206.2
Q ss_pred hccCChHHHHH-HHHHhhhCCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008925 110 GNVGKPEESLK-LLQLMSQDKNVKP--NDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGET 186 (548)
Q Consensus 110 ~~~g~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 186 (548)
...|++++|+. .|++........| +...+..++..+...|++++|+..|+++++.. +.+..++..++.++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34467777877 7776554321122 34557778888888888888888888888764 45677788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 008925 187 YRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLM 266 (548)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 266 (548)
++|...++++.+..+. +..++..++.++...|++++|...++++.... +.+...+..+... .
T Consensus 115 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~--------- 176 (368)
T 1fch_A 115 LLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------A--------- 176 (368)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC----------------------
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------h---------
Confidence 8888888888776433 67778888888888888888888888887754 2222222111000 0
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 008925 267 EEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEP--DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN 344 (548)
Q Consensus 267 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 344 (548)
. ...+. ..+..+...+ ..|++++|...++++++.. +. +..++..++..|...|++++|+..++++.+.. +.+
T Consensus 177 -~-~~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 177 -G-GAGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred -h-hhccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 0 00000 1111222233 6778888888888887764 33 57778888888888888888888888887753 334
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----------C
Q 008925 345 VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP----------K 414 (548)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~ 414 (548)
..++..++..+...|++++|+..|+++++.. +.+..++..++.+|.+.|++++|...++++.+..... .
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 6678888888888888888888888888764 5567788888888888888888888888877532111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 415 KSTIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
..++..++.++...|++++|..++++..+
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 46788888888888888888888776553
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=5.7e-18 Score=169.60 Aligned_cols=397 Identities=10% Similarity=0.022 Sum_probs=294.1
Q ss_pred cccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChHHH
Q 008925 5 VGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINAC-SESGNVDEA 83 (548)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A 83 (548)
.+.|++++|..+|+.+++.. +.+...|..++..+.+.|++++|..+|++++.. .|+...|..++... ...|+.+.|
T Consensus 23 ~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTH
T ss_pred HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhH
Confidence 45799999999999999874 347789999999999999999999999999986 46888888877544 456787777
Q ss_pred HH----HHHHHHhc-CCCC-CHHHHHHHHHHHhc---------cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH---
Q 008925 84 MK----IFQKMKDS-GCKP-TTSTYNTLIKGYGN---------VGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAW--- 145 (548)
Q Consensus 84 ~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 145 (548)
.+ +|++.+.. |..| +...|...+..... .|++++|..+|++....+ ..+....|.......
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-~~~~~~~~~~~~~~e~~~ 178 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-MINIEQLWRDYNKYEEGI 178 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC-CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch-hhhHHHHHHHHHHHHHhh
Confidence 65 77777653 4433 56788888777654 688999999999998731 111123343332211
Q ss_pred ----------HhCCCHHHHHHHHHHH------HHCC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHH
Q 008925 146 ----------CSKNSIEEAWNVVYKM------VASG---IQPD--------AVTYNTLARAYAQY----GET----YRAE 190 (548)
Q Consensus 146 ----------~~~g~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l~~~~~~~----g~~----~~a~ 190 (548)
...++++.|..++.+. .+.. ++|+ ...|...+...... ++. .++.
T Consensus 179 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~ 258 (530)
T 2ooe_A 179 NIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVM 258 (530)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHH
Confidence 1234567777776653 2221 2443 23455554333222 232 4778
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 008925 191 QMLFEMQNNQVRPNERTCGIIVSGYCK-------EGNME-------DAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDS 256 (548)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 256 (548)
.+|++++...+ .+...|..++..+.+ .|+++ +|..+|++.++.-.|.+...|..++..+...|++
T Consensus 259 ~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 259 FAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 88998887643 378888888888775 79977 9999999998632356788999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCHhHHHHHHH
Q 008925 257 DGVDKALTLMEEFGVKPDV-VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKG-YVRAGEPQKAESILT 334 (548)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~ 334 (548)
++|..+++.+.+..+. +. ..|..++..+.+.|+++.|..+|+++++.. +.+...+...+.. +...|++++|..+|+
T Consensus 338 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 338 EKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 9999999999986422 33 578888888899999999999999999863 3344444433333 346899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 335 SMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG-INPN--LKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 335 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
..++.. +.+...|..++..+.+.|+.++|..+|++++..+ .+|+ ...|...+......|+.+.+..+++++.+.
T Consensus 416 ~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 416 LGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998753 3357889999999999999999999999999864 1222 447888888888999999999999998864
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=3.3e-20 Score=176.99 Aligned_cols=276 Identities=10% Similarity=-0.040 Sum_probs=171.9
Q ss_pred CCCHHHHHH-HHHHHHHCCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008925 148 KNSIEEAWN-VVYKMVASGIQ-P--DAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMED 223 (548)
Q Consensus 148 ~g~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 223 (548)
.|++++|+. .+++....... | +...+..++..+...|++++|...++++.+..+. +..++..++.++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHH
Confidence 355555555 55544332100 0 2334555555566666666666666665554322 45555555555556666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 008925 224 AMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVK 303 (548)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (548)
|+..|+++.+.. +.+..++..++..+...|++++|...++.+.+..+. +...+..+... .. ..
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~~- 179 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------GA- 179 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------hh-
Confidence 666665555543 334455555555555555555555555555544321 11111000000 00 00
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHH
Q 008925 304 AGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKT 382 (548)
Q Consensus 304 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 382 (548)
.+ ...+..+...+ ..|++++|...++++.+..... +..++..++..+...|++++|+..|+++++.. +.+..+
T Consensus 180 ---~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 253 (368)
T 1fch_A 180 ---GL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL 253 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ---cc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHH
Confidence 00 01111333344 8899999999999998864221 47789999999999999999999999999875 667889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 383 YETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
+..++..+...|++++|+..++++.+.. +.+...+..++.++...|++++|+..++++.+..|..
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999998753 3346689999999999999999999999999776655
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=9.9e-20 Score=173.49 Aligned_cols=276 Identities=9% Similarity=-0.009 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 135 DRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSG 214 (548)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (548)
...+..++..+.+.|++++|+..|+++++.. +.+..++..++.++...|++++|+..|+++.+..+. +..++..++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3446666667777777777777777766653 345666666666666777777777766666654322 45666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhH
Q 008925 215 YCKEGNMEDAMRFLYRMKELEVHPNL-VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGK 293 (548)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 293 (548)
|...|++++|+..|+++.+.. |+. ..+..+. .....+..+...+...|++++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHH
Confidence 666666666666666665532 211 1111100 112334556778888999999
Q ss_pred HHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 008925 294 CQEIFDDMVKAGIEP--DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKM 371 (548)
Q Consensus 294 a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 371 (548)
|..+++++++.. +. +..++..++..|...|++++|+..|+++.+.. +.+..+|..++.+|...|++++|+..|+++
T Consensus 196 A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 196 VKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998875 34 68889999999999999999999999988763 345778999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---C--------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 372 CEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVR---P--------KKSTIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
++.. +.+..++..++.+|...|++++|...|+++.+.... | +..+|..++.++...|+.+.|.++.++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9875 566888999999999999999999999998753211 1 256888999999999999999988876
Q ss_pred HH
Q 008925 441 AE 442 (548)
Q Consensus 441 ~~ 442 (548)
.+
T Consensus 353 ~l 354 (365)
T 4eqf_A 353 DL 354 (365)
T ss_dssp CC
T ss_pred hH
Confidence 44
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.4e-18 Score=170.03 Aligned_cols=388 Identities=11% Similarity=0.021 Sum_probs=242.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----C
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKD--------GMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS-----G 94 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 94 (548)
....|+.|+.++...|++++|++.|++..+. .-+....+|..+..+|...|++++|...++++.+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3467888888888889999998888887542 11234567888888888888898888888887642 1
Q ss_pred -C-CCCHHHHHHHHHHHhcc--CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHCCCC
Q 008925 95 -C-KPTTSTYNTLIKGYGNV--GKPEESLKLLQLMSQDKNVKPNDRTYNILVRA---WCSKNSIEEAWNVVYKMVASGIQ 167 (548)
Q Consensus 95 -~-~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~ 167 (548)
. .....++..+..++... +++++|+..|++..... |.+...+..+..+ +...++.++|++.+++.++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 0 12345666666555544 46888888888887652 3345555555444 345577778888888887764 4
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008925 168 PDAVTYNTLARAYAQ----YGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVF 243 (548)
Q Consensus 168 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 243 (548)
.+..++..+...+.. .+++++|.+.+++.....+. +..++..++..|...|++++|+..++++.+.. |.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 456666666655544 35667788888887765433 66777888888888888888888888887754 4455666
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008925 244 NSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRA 323 (548)
Q Consensus 244 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (548)
..+...|...+.. ..... .. .........+..+.|...++.+.+.+ +.+..++..++..|...
T Consensus 285 ~~lg~~y~~~~~~---------~~~~~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQ---------VMNLR-EN------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH---------hhhHH-HH------HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 6666665321110 00000 00 00011112234678888888888775 55667788899999999
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 324 GEPQKAESILTSMRKYGVHPNVV--MFTTVIS-GWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAE 400 (548)
Q Consensus 324 g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (548)
|++++|+..|+++++....+... .+..+.. .....|++++|+..|+++++. .|+....... ...+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHH
Confidence 99999999999998864333221 2333333 234679999999999999986 4543332222 23345
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 401 ELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
.++++.++.+ +.+..++..++.++...|++++|++.++++.+..+..|
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 5566665542 34566899999999999999999999999987766554
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=8.3e-20 Score=173.99 Aligned_cols=277 Identities=9% Similarity=-0.019 Sum_probs=196.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008925 98 TTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLA 177 (548)
Q Consensus 98 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 177 (548)
+...+..++..+.+.|++++|+.+|+++.... +.+...+..++.++...|++++|+..|+++++.. +.+..++..++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34558889999999999999999999998763 5678899999999999999999999999999875 55688999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 008925 178 RAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSD 257 (548)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 257 (548)
.+|...|++++|...++++.+..+. +...+..+. .....+..+...+...|+++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHH-HHCC--------------------------------------------CCHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHH
Confidence 9999999999999999999875321 111121110 11223344445555556666
Q ss_pred hHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 008925 258 GVDKALTLMEEFGVK-PDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSM 336 (548)
Q Consensus 258 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 336 (548)
+|...++.+.+..+. ++..++..+...+...|++++|...++++++.. +.+..++..++.+|...|++++|+..|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666665554322 146667777777777777777777777777664 556777777788888888888888888777
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008925 337 RKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI-----------NPNLKTYETLLWGYGEAKQPWRAEELLQV 405 (548)
Q Consensus 337 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (548)
.+.. +.+..++..++.+|...|++++|...|+++++... ..+...|..+..++...|+.+.+..+.++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7653 22466777788888888888888888888776420 01256788888999999998888776654
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=6.3e-19 Score=165.04 Aligned_cols=280 Identities=10% Similarity=0.036 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 135 DRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSG 214 (548)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (548)
...+..++..+...|++++|..+|+++.+.. +.+..++..++.++...|++++|.+.++++.+..+. +..++..++..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHH
Confidence 3456677778888888888888888887764 446777778888888888888888888887776432 66777778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHhCCChh
Q 008925 215 YCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTI-MD-AWSSAGLMG 292 (548)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~ 292 (548)
+...|++++|...++++.... +.+...+..+... .|+......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 888888888888888887653 2222222222110 0111111122 22 266778889
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 008925 293 KCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMC 372 (548)
Q Consensus 293 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 372 (548)
+|...++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+..++..++..+...|++++|...|+++.
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999988875 5678888999999999999999999999988753 3357788899999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 373 EIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-----------KKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
+.. +.+..++..++.++...|++++|...++++.+....+ +...+..++.++...|++++|..+++++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 875 5678889999999999999999999999988642111 3558888999999999999999998875
Q ss_pred H
Q 008925 442 E 442 (548)
Q Consensus 442 ~ 442 (548)
.
T Consensus 313 l 313 (327)
T 3cv0_A 313 V 313 (327)
T ss_dssp S
T ss_pred H
Confidence 4
No 28
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=4e-16 Score=161.90 Aligned_cols=377 Identities=12% Similarity=0.126 Sum_probs=261.5
Q ss_pred cccccCChhhHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGH--RPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV 80 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (548)
+|...|.+.+|+++++.++-.+. ..+....+.++.+..+. +..+..+..++.... + ...+...+...|.+
T Consensus 994 af~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 994 AFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELF 1065 (1630)
T ss_pred HHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCH
Confidence 45667788888888888774311 12334555566655555 556666666554421 1 23366677788888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYK 160 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (548)
++|..+|++.. ......+.++. ..+++++|.++.++. .+..+|..++.++...|++++|++.|.+
T Consensus 1066 EEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1066 EEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 88888888863 12223333332 567788888888765 2467788888888888888888888866
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008925 161 MVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240 (548)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 240 (548)
. .|...|..++.++.+.|++++|.++|....+.. +++...+.++.+|++.+++++...+. + .++.
T Consensus 1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 3 467778888888888888888888888777654 23333445888888888877543332 2 3556
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGY 320 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (548)
..|..++..|...|++++|...|..+ ..|..++.++.+.|+++.|.+.++++ .+..+|..+..+|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHH
Confidence 67777888888888888888888874 36778888888888888888888876 3557788888888
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CChHH
Q 008925 321 VRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA--KQPWR 398 (548)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~ 398 (548)
...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+... +-....|+.|..+|.+. ++..+
T Consensus 1261 ve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred hhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHH
Confidence 88888888877766432 355667788899999999999999999888654 44445676666666653 34444
Q ss_pred HHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 399 AEELLQVMEEKGVRP------KKSTIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 399 A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
+.++|..-. +++| +...|..++-+|.+.|+++.|...+-+
T Consensus 1335 hlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1335 HLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 555444322 2333 345788888999999999998865544
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=7.2e-18 Score=157.82 Aligned_cols=279 Identities=10% Similarity=-0.004 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008925 99 TSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLAR 178 (548)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 178 (548)
...+..+...+...|++++|+.+|+++.+. .+.+...+..++.++...|++++|...++++.+.. +.+..++..++.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 345677888999999999999999999875 35678889999999999999999999999999874 557889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHcCCCh
Q 008925 179 AYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIK--GFLDIKDS 256 (548)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 256 (548)
.+...|++++|.+.++++.+.... +...+..+... .++......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 999999999999999999887443 23333222110 011111122212 25566777
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 008925 257 DGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSM 336 (548)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 336 (548)
++|...++.+.+..+ .+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 778877777776643 367778888888888899999999998888775 566788889999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC------------CHHHHHHHHHHHHhcCChHHHHHHHH
Q 008925 337 RKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINP------------NLKTYETLLWGYGEAKQPWRAEELLQ 404 (548)
Q Consensus 337 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (548)
.+.. +.+..++..++..+...|++++|.+.|+++.+.. +. +..++..+..++...|++++|..+++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8753 3356788889999999999999999999998764 22 46788999999999999999999887
Q ss_pred HHH
Q 008925 405 VME 407 (548)
Q Consensus 405 ~~~ 407 (548)
+..
T Consensus 311 ~~l 313 (327)
T 3cv0_A 311 QNV 313 (327)
T ss_dssp CCS
T ss_pred HHH
Confidence 543
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=6.2e-16 Score=160.52 Aligned_cols=384 Identities=13% Similarity=0.119 Sum_probs=206.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 008925 33 TTLVAALTRQKRFKSILSLISKVEKDGM--KPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYG 110 (548)
Q Consensus 33 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (548)
...+++|...|.+.+|+++++++.-.+- ..+...-+.++.+..+. +..+..++.+++... + ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 4445556666666666666666653211 12233444444444444 334444444443311 1 223555566
Q ss_pred ccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008925 111 NVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAE 190 (548)
Q Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 190 (548)
..|.+++|..+|++... .....+.++ ...+++++|.++.++. -+..+|..++.++...|++++|.
T Consensus 1061 ~lglyEEAf~IYkKa~~------~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV------NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred hCCCHHHHHHHHHHcCC------HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 66666666666666421 111122222 1455666666666543 24556666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcC
Q 008925 191 QMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFG 270 (548)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 270 (548)
+.|.+. .|...|..++.++.+.|++++|++++....+.. +++...+.++.+|.+.+++++.... ..
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~-- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN-- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh--
Confidence 666443 255566666666666666666666666665543 2222233466666666655532222 11
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 008925 271 VKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTT 350 (548)
Q Consensus 271 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 350 (548)
.++...+..+...|...|++++|..+|..+ ..|..++.+|.+.|++++|.+.+++.. +..+|..
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWke 1255 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKE 1255 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHH
Confidence 234445555666666666666666666653 256666666666666666666666552 4466666
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--
Q 008925 351 VISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAI-- 428 (548)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-- 428 (548)
+..+|...|+++.|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-....+..++.++.+.
T Consensus 1256 v~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCH
Confidence 666666666666666554432 2344555566666666666666666666655432 11223454455444433
Q ss_pred CCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccccccccccccccccccCCCChhhh
Q 008925 429 GLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAAK 491 (548)
Q Consensus 429 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~ 491 (548)
++..++.++|.+-....+. -........|..+.-+|.+-|.||.|..
T Consensus 1330 eklmEhlk~f~~rini~k~----------------~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKV----------------LRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHhcccchH----------------hHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3455555555542211110 0011233345667778888899998875
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=2.5e-18 Score=160.13 Aligned_cols=378 Identities=13% Similarity=0.085 Sum_probs=172.7
Q ss_pred ccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 6 GKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMK 85 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 85 (548)
+.|++++|.++++++ +++.+|..|+.++.+.|++++|++.|.+ .+|...|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 557799999999987 2234899999999999999999999965 3567788999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 008925 86 IFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASG 165 (548)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 165 (548)
.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 88877764 4557788889999999999999887773 366679999999999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008925 166 IQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNS 245 (548)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (548)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|..+...+. ..+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHH
Confidence 47888999999999999999999988 278899999999999999999966554422 33333556
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH-HcCCCC------CHHHHHHHHH
Q 008925 246 LIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMV-KAGIEP------DIHVFSILAK 318 (548)
Q Consensus 246 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~------~~~~~~~l~~ 318 (548)
++..|.+.|.+++|..+++...... +.....|+.+..+|++- ++++..+.++... +.+++| +...|..+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999888765 45677788887777765 3444433333222 122233 3456788888
Q ss_pred HHHHcCCHhHHHHHHHHHHhC-CC-------------CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 008925 319 GYVRAGEPQKAESILTSMRKY-GV-------------HPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYE 384 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~-~~-------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 384 (548)
.|...++++.|... |.++ .. ..+...|-..+..|. +....++.-+...+...+ |. .
T Consensus 291 ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~l--d~---~ 360 (449)
T 1b89_A 291 LYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRL--DH---T 360 (449)
T ss_dssp HHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGC--CH---H
T ss_pred HHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhcc--Cc---H
Confidence 89999999988664 3332 01 112333444444443 112222222222222111 11 2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 385 TLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
..+..+.+.|...-+..+++..... .+..+-..+-+++....+++.-+.-++.
T Consensus 361 r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 361 RAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2334455666666666666555542 3455566677778888887776555554
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=5.6e-19 Score=164.47 Aligned_cols=283 Identities=13% Similarity=0.167 Sum_probs=136.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 008925 41 RQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLK 120 (548)
Q Consensus 41 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 120 (548)
+.|++++|.+.++++. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678999999999872 2348999999999999999999999753 577799999999999999999999
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008925 121 LLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQ 200 (548)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 200 (548)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 83 yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 88777653 4557788999999999999999988874 367789999999999999999999999977
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 008925 201 VRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFST 280 (548)
Q Consensus 201 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (548)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 47899999999999999999999988 3789999999999999999999655443 2233444557
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh-CCCCC------CHHHHHHHHH
Q 008925 281 IMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK-YGVHP------NVVMFTTVIS 353 (548)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p------~~~~~~~l~~ 353 (548)
++..|.+.|++++|..+++..+... +.....|+-|.-+|++- ++++..+.++...+ .+++| +...|..+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999776 67788899888888765 34444444433322 12222 3557888999
Q ss_pred HHhccCChHHHHHH
Q 008925 354 GWCNAVKMQRAMSI 367 (548)
Q Consensus 354 ~~~~~g~~~~A~~~ 367 (548)
.|.+.++++.|...
T Consensus 291 ly~~~~e~d~A~~t 304 (449)
T 1b89_A 291 LYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHhhchHHHHHHH
Confidence 99999999988763
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=2e-17 Score=151.08 Aligned_cols=250 Identities=11% Similarity=0.052 Sum_probs=137.7
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008925 144 AWCSKNSIEEAWNVVYKMVASGIQPDA--VTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNM 221 (548)
Q Consensus 144 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 221 (548)
-....|++..|+..+++.... .|+. .....+.++|...|+++.|+..++. ..+|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344566666666666554332 2222 2334456666666666666654433 1233455555566666666666
Q ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 008925 222 EDAMRFLYRMKELEV-HPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDD 300 (548)
Q Consensus 222 ~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (548)
++|++.++++...+. |.+...+..+...+...|++++|.+.++. +.+...+..++..+.+.|++++|...+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666655442 33445555555666666666666666654 23455556666666666666666666666
Q ss_pred HHHcCCCCCHHHH--HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 008925 301 MVKAGIEPDIHVF--SILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINP 378 (548)
Q Consensus 301 ~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 378 (548)
+.+.. +.+.... ..++..+...|++++|..+|+++.+.. +.+...++.++.++.+.|++++|...|+++++.. |.
T Consensus 156 ~~~~~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 156 MQDQD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhC-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 66553 2221111 112223333456666666666665542 3345556666666666666666666666666554 44
Q ss_pred CHHHHHHHHHHHHhcCChHH-HHHHHHHHHH
Q 008925 379 NLKTYETLLWGYGEAKQPWR-AEELLQVMEE 408 (548)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 408 (548)
+..++..++..+...|+.++ +.++++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55566666666666666554 3455566554
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=2.9e-17 Score=150.05 Aligned_cols=249 Identities=14% Similarity=0.102 Sum_probs=130.8
Q ss_pred HhccCChHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008925 109 YGNVGKPEESLKLLQLMSQDKNVKPND--RTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGET 186 (548)
Q Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 186 (548)
....|++..|+..++..... .|+. .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 33456666666655554321 2222 23344555666666666665544331 134445555555556666666
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHH
Q 008925 187 YRAEQMLFEMQNNQVRP-NERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTL 265 (548)
Q Consensus 187 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 265 (548)
++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666655544222 344445555556666666666666554 34555555666666666666666666666
Q ss_pred HHHcCCCCCHHHH---HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC
Q 008925 266 MEEFGVKPDVVTF---STIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVH 342 (548)
Q Consensus 266 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 342 (548)
+.+.. |+.... ...+..+...|++++|..+|+++++.. +.+...++.++.++.+.|++++|...|+++++.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 55543 221110 112222333455666666666666553 4555566666666666666666666666655542 2
Q ss_pred CCHHHHHHHHHHHhccCChHH-HHHHHHHHHHc
Q 008925 343 PNVVMFTTVISGWCNAVKMQR-AMSIYEKMCEI 374 (548)
Q Consensus 343 p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 374 (548)
-+..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 244455556655555665544 34555666554
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=4e-17 Score=159.12 Aligned_cols=373 Identities=12% Similarity=0.051 Sum_probs=241.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 008925 34 TLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV---DEAMKIFQKMKDSGCKPTTSTYNTLIKGYG 110 (548)
Q Consensus 34 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (548)
.+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|...|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35666777888888888888887765 223345566666667777 7888888887753 4455666666454
Q ss_pred ccC-----ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008925 111 NVG-----KPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSI---EEAWNVVYKMVASGIQPDAVTYNTLARAYAQ 182 (548)
Q Consensus 111 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (548)
..+ ++++|+..|++....+ +...+..|...|...+.. .++.+.+.+....| +......|...|..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 444 6778888888877642 233666677777665543 34555566555544 45566677778887
Q ss_pred cCCHHHHH----HHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC--
Q 008925 183 YGETYRAE----QMLFEMQNNQVRPNERTCGIIVSGYCKEG---NMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDI-- 253 (548)
Q Consensus 183 ~g~~~~a~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 253 (548)
.+.++++. .+++.... .++..+..+..+|...| ++++|+..|++..+.+ +++...+..+...|...
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATL 228 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGG
T ss_pred CCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCC
Confidence 77554444 44444333 24448888888888888 8999999999998877 56666667777777655
Q ss_pred --CChhhHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----
Q 008925 254 --KDSDGVDKALTLMEEFGVKPDVVTFSTIMDA-W--SSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAG---- 324 (548)
Q Consensus 254 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 324 (548)
+++++|...++... .+ ++..+..+... + ...+++++|...|++..+.| +...+..|..+|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp SSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 68889999998887 33 45566667766 4 46789999999999998865 6778888888887 55
Q ss_pred -CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCC
Q 008925 325 -EPQKAESILTSMRKYGVHPNVVMFTTVISGWCN----AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE----AKQ 395 (548)
Q Consensus 325 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 395 (548)
++++|...|++.. . -+...+..|...|.. ..++++|...|+++.+.| +......|...|.. ..+
T Consensus 301 ~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp CCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCC
T ss_pred CCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCC
Confidence 8999999999887 3 366777888877766 448999999999999876 34455667777764 468
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHh
Q 008925 396 PWRAEELLQVMEEKGVRPKKSTIQLVADSW--RAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 396 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 443 (548)
+.+|..+|+...+.|. ......+..+. ...++..+|.++.++..+
T Consensus 374 ~~~A~~~~~~A~~~g~---~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQDT---PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHHTTCC---HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999988762 22222222222 223467777777777653
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.75 E-value=4.9e-16 Score=151.45 Aligned_cols=373 Identities=12% Similarity=0.048 Sum_probs=250.9
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRF---KSILSLISKVEKDGMKPDSILFNAMINACSESG-- 78 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 78 (548)
+.+.|++++|+..|+.+.+.| +..++..|+..+...|+. ++|...|++..+. ++..+..|...+...+
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCC
Confidence 467899999999999998875 344566777888888888 8999999998754 4556667777555555
Q ss_pred ---ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChH---HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHH
Q 008925 79 ---NVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPE---ESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIE 152 (548)
Q Consensus 79 ---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (548)
++++|+..|++..+.|. + ..+..|...|...+..+ ++.+.+...... .+......+...|...+.++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~----g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA----GYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH----TCTTHHHHHHHHHHHHTCGG
T ss_pred CCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcc
Confidence 78999999999998763 2 36667777777665433 345555554432 24566778888888888555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHH
Q 008925 153 EAWNVVYKMVASGIQPDAVTYNTLARAYAQYG---ETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKE----GNMEDAM 225 (548)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~ 225 (548)
++......+.+.-...+...+..|...|...| ++++|++.|++..+.+.. +...+..+..+|... +++++|+
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 54444333222211223448888999999999 999999999999988754 666667788888665 7999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH-H--HcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-----ChhHHHHH
Q 008925 226 RFLYRMKELEVHPNLVVFNSLIKG-F--LDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAG-----LMGKCQEI 297 (548)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~ 297 (548)
.+|++.. +.++..+..+... + ...+++++|...+++..+.+ ++..+..+...|. .| ++++|...
T Consensus 238 ~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 238 ALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 9999987 3566777777777 4 56889999999999999876 6677788888887 45 99999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHH
Q 008925 298 FDDMVKAGIEPDIHVFSILAKGYVR----AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN----AVKMQRAMSIYE 369 (548)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 369 (548)
|++.. +.++..+..|..+|.. ..++++|...|++..+.| +......|...|.. ..+..+|...|+
T Consensus 310 ~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 310 FEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 99888 4467888888888876 349999999999999876 34556677777764 568999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 370 KMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
++.+.| .++.......+......++..+|..+.++..
T Consensus 383 ~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 383 LAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999877 3333332222222223344555666555544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=2.3e-16 Score=137.59 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=43.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 008925 289 GLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIY 368 (548)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 368 (548)
|++++|+..++++++.. |.+...+..+..++...|++++|+..|+++.+.. .+...+..++.++...|++++|+..|
T Consensus 98 g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444444432 2333444444444444444444444444444433 23344444444444444444444444
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008925 369 EKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQ 404 (548)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (548)
+++++.. |.+...+..+..++...|++++|+..++
T Consensus 175 ~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 175 AKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444432 3333444444444444444444444443
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=6.6e-16 Score=138.99 Aligned_cols=224 Identities=13% Similarity=0.050 Sum_probs=132.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC--CC----HHHHHHH
Q 008925 208 CGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK--PD----VVTFSTI 281 (548)
Q Consensus 208 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 281 (548)
+..++..+...|++++|+.+|+++.+.. .+...+..+...+...|++++|...++.+.+..+. ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 33344444444444444444444444444332111 11 3555666
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 008925 282 MDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKM 361 (548)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 361 (548)
..++...|++++|...++++.+. .|+. ..+...|++++|...++++.... +.+...+..++..+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 66666667777777777666665 2332 23455566777777777776642 12344666777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 362 QRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
++|+..|+++++.. +.+..++..++.++...|++++|+..++++++.. +.+...+..++.++...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777664 5566777777777777777777777777777642 223556777777777777777777777776
Q ss_pred Hhcc
Q 008925 442 EEDR 445 (548)
Q Consensus 442 ~~~~ 445 (548)
.+..
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 6544
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.2e-16 Score=139.64 Aligned_cols=224 Identities=11% Similarity=-0.007 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHH
Q 008925 171 VTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEV--HPN----LVVFN 244 (548)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 244 (548)
..+..++..+...|++++|...++++.+.. .+..++..++.++...|++++|+..++++.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555555556666655555555544 3555555555666666666666666655544320 011 35566
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 008925 245 SLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAG 324 (548)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 324 (548)
.+...+...|++++|...++.+.+.. |+. ..+...|++++|...++.+.... +.+...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 66666666666666666666666643 232 23455567778888888877764 445567777888888888
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008925 325 EPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQ 404 (548)
Q Consensus 325 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (548)
++++|...++++.+.. +.+...+..++..+...|++++|+..|+++++.. +.+...+..++.++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888887753 3356677888888888888888888888888765 5567788888888888888888888888
Q ss_pred HHHH
Q 008925 405 VMEE 408 (548)
Q Consensus 405 ~~~~ 408 (548)
++.+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 40
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.73 E-value=5.8e-13 Score=134.06 Aligned_cols=435 Identities=9% Similarity=0.023 Sum_probs=306.3
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHH
Q 008925 9 KPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGN---VDEAMK 85 (548)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 85 (548)
...+.+..|+..+..++. |..+|..++..+.+.+.++.+..+|+.+... +|.....|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 355667778888887764 9999999999999999999999999999987 67788899999999899999 999999
Q ss_pred HHHHHHhcC-CCCCHHHHHHHHHHHhccCCh--------HHHHHHHHHhhhCCCC-CC-CHHHHHHHHHHHHh-------
Q 008925 86 IFQKMKDSG-CKPTTSTYNTLIKGYGNVGKP--------EESLKLLQLMSQDKNV-KP-NDRTYNILVRAWCS------- 147 (548)
Q Consensus 86 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~------- 147 (548)
+|++.+... .+|++..|...+....+.++. +...++|+.....-|. .+ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998863 138899998888766655543 3344788877665444 34 45788887766442
Q ss_pred --CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhC--CC----C----
Q 008925 148 --KNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQ-------------YGETYRAEQMLFEMQNN--QV----R---- 202 (548)
Q Consensus 148 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~~--~~----~---- 202 (548)
.++++.+..+|++++......-..+|......-.. ..+++.|...+.++... ++ +
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 34577889999998863211112333322211111 12334455555443210 11 1
Q ss_pred -------C--C------HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHH
Q 008925 203 -------P--N------ERTCGIIVSGYCKEG-------NMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVD 260 (548)
Q Consensus 203 -------~--~------~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 260 (548)
| + ...|...+..--..+ ..+.+..+|++++.. .+.....|...+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 0 123333333222222 134456778888775 3567889999998888889999996
Q ss_pred -HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC---------CCCC------------HHHHHHHHH
Q 008925 261 -KALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG---------IEPD------------IHVFSILAK 318 (548)
Q Consensus 261 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~l~~ 318 (548)
++++...... +.+...+...+......|+++.|..+|+.++... ..|+ ..+|...+.
T Consensus 364 r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 9999998764 4466677778888889999999999999998641 0132 346788888
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA-VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPW 397 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 397 (548)
...+.|+.+.|..+|..+.+.-..+....|...+..-.+. ++.+.|.++|+..++. ++.+...|...+......|+.+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 8888999999999999998751112233443333322333 5599999999999987 3667777778888888899999
Q ss_pred HHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 398 RAEELLQVMEEKGVRPK--KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 398 ~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.|..+|++.+.....++ ...|..++..-...|+.+.+.++.+++.+..|..
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999987542222 3478888888889999999999999999777654
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=1.4e-15 Score=138.12 Aligned_cols=237 Identities=9% Similarity=0.018 Sum_probs=166.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 008925 207 TCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKP--DVVTFSTIMDA 284 (548)
Q Consensus 207 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 284 (548)
.+......+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+....+ ....+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455566666677777777777666643 3344566666667777777777777777666632111 23456777788
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 008925 285 WSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRA 364 (548)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 364 (548)
+...|++++|...++++.+.. +.+..++..++..|...|++++|+..++++.+.. +.+...+..++..+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888765 5566788888888888888888888888887753 33456677777233344588888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHHcCCHHHH
Q 008925 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQ---PWRAEELLQVMEEKG-VRPK------KSTIQLVADSWRAIGLAREA 434 (548)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A 434 (548)
++.|+++++.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ...+..++.++...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888865 5567777888888888887 778888888877531 1133 24677788888888999999
Q ss_pred HHHHHHHHhccCC
Q 008925 435 KRVLKSAEEDRQS 447 (548)
Q Consensus 435 ~~~~~~~~~~~~~ 447 (548)
...++++.+.+|.
T Consensus 241 ~~~~~~al~~~p~ 253 (272)
T 3u4t_A 241 DAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCcc
Confidence 9999888766654
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=6.4e-16 Score=134.81 Aligned_cols=115 Identities=11% Similarity=-0.024 Sum_probs=51.6
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 008925 254 KDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESIL 333 (548)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 333 (548)
|++++|...++...+..+. +...+..+..++...|++++|+..|+++++.+ .+...+..+..+|...|++++|+..|
T Consensus 98 g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555554444321 34445555555555555555555555555554 44555555555555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 008925 334 TSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMC 372 (548)
Q Consensus 334 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 372 (548)
+++.+.. +.+...+..+...+...|++++|+..|++..
T Consensus 175 ~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 175 AKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 5555432 1234445555555555555555555555443
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=3.6e-15 Score=135.42 Aligned_cols=231 Identities=10% Similarity=0.001 Sum_probs=99.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHh
Q 008925 140 ILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPN--ERTCGIIVSGYCK 217 (548)
Q Consensus 140 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 217 (548)
..+..+...|++++|+..|+++++.. +.+...+..++.++...|++++|++.++++.+....++ ..++..++.++..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 33444444455555555555444432 22233444444444455555555555544444211111 1224444444555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 008925 218 EGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEI 297 (548)
Q Consensus 218 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 297 (548)
.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+..+...+...+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544432 2233444444444444444444444444444332 12333343444122222355555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCC---HhHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHhccCChHHHHHH
Q 008925 298 FDDMVKAGIEPDIHVFSILAKGYVRAGE---PQKAESILTSMRKYG-VHPN------VVMFTTVISGWCNAVKMQRAMSI 367 (548)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A~~~ 367 (548)
++++++.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..+|..+...|...|++++|...
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555443 3334444444444444444 444544444443310 0011 12344444444445555555555
Q ss_pred HHHHHHc
Q 008925 368 YEKMCEI 374 (548)
Q Consensus 368 ~~~~~~~ 374 (548)
|+++++.
T Consensus 244 ~~~al~~ 250 (272)
T 3u4t_A 244 WKNILAL 250 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555544
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=5.9e-15 Score=139.23 Aligned_cols=247 Identities=11% Similarity=0.018 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 170 AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGN-MEDAMRFLYRMKELEVHPNLVVFNSLIK 248 (548)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (548)
...|..+...+...|++++|+..++++++..+. +..+|..+..++...|+ +++|+..|++++... +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 345666666667777777777777777665443 56667777777777775 777777777777654 455677777777
Q ss_pred HHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHh
Q 008925 249 GFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR-AGEPQ 327 (548)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 327 (548)
++...|++++|+..++++++..+. +...|..+..++...|++++|+..++++++.+ +.+..+|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 777777777777777777776533 56677777777777777777777777777765 5567777777777777 45546
Q ss_pred HH-----HHHHHHHHhCCCCCCHHHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------
Q 008925 328 KA-----ESILTSMRKYGVHPNVVMFTTVISGWCNAV--KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK------ 394 (548)
Q Consensus 328 ~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 394 (548)
+| +..+++++... +-+...|..+...+...| ++++|++.++++ +.. +.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 66 46677776643 224556777777777766 577777777776 432 555667777777777653
Q ss_pred ---ChHHHHHHHHHH-HHCCCCCCHH-HHHHHHHHH
Q 008925 395 ---QPWRAEELLQVM-EEKGVRPKKS-TIQLVADSW 425 (548)
Q Consensus 395 ---~~~~A~~~~~~~-~~~~~~p~~~-~~~~l~~~~ 425 (548)
..++|+++++++ .+. .|... .|..++..+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 246777777777 542 45433 555554444
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=3e-14 Score=129.32 Aligned_cols=222 Identities=11% Similarity=-0.014 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 008925 205 ERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLD----IKDSDGVDKALTLMEEFGVKPDVVTFST 280 (548)
Q Consensus 205 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (548)
..++..+...+...|++++|+..|++..+ +.+..++..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 33444444444455555555555555444 2233444444444544 555555555555554443 3444555
Q ss_pred HHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008925 281 IMDAWSS----AGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR----AGEPQKAESILTSMRKYGVHPNVVMFTTVI 352 (548)
Q Consensus 281 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 352 (548)
+...+.. .+++++|...|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 556666666666555543 44555555555655 566666666666665543 344455555
Q ss_pred HHHhc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008925 353 SGWCN----AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE----AKQPWRAEELLQVMEEKGVRPKKSTIQLVADS 424 (548)
Q Consensus 353 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 424 (548)
..|.. .+++++|+..|+++.+.+ +...+..+...|.. .+++++|+..+++..+.+ | ...+..++.+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHH
Confidence 55554 566666666666666543 34555556666666 666666666666665542 1 4455555666
Q ss_pred HHH----cCCHHHHHHHHHHHHhc
Q 008925 425 WRA----IGLAREAKRVLKSAEED 444 (548)
Q Consensus 425 ~~~----~g~~~~A~~~~~~~~~~ 444 (548)
+.. .|++++|.++++++.+.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHc
Confidence 665 56666666666665543
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=5.9e-15 Score=139.27 Aligned_cols=249 Identities=8% Similarity=0.049 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 135 DRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGE-TYRAEQMLFEMQNNQVRPNERTCGIIVS 213 (548)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 213 (548)
...|..+...+...|++++|+..++++++.. +-+...|+.+..++...|+ +++|+..|++++...+. +..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3566777777778888888888888887764 4457777888888888886 88888888888776554 6778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-CCChh
Q 008925 214 GYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSS-AGLMG 292 (548)
Q Consensus 214 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 292 (548)
++...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++++..+. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888888765 566788888888888888888888888888887643 67788888888888 55557
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC------
Q 008925 293 KC-----QEIFDDMVKAGIEPDIHVFSILAKGYVRAG--EPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAV------ 359 (548)
Q Consensus 293 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------ 359 (548)
+| +..++++++.. +.+...|..+..++...| ++++|++.+.++ +.. +.+...+..++..|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 77 47788888775 567778888888888877 588888888887 432 335667788888887764
Q ss_pred --C-hHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Q 008925 360 --K-MQRAMSIYEKM-CEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 360 --~-~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 391 (548)
+ .++|+++|+++ .+.+ +.....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 2 58899999988 6653 444556666665554
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=8.3e-14 Score=126.42 Aligned_cols=221 Identities=13% Similarity=0.045 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008925 171 VTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCK----EGNMEDAMRFLYRMKELEVHPNLVVFNSL 246 (548)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (548)
.++..+...+...|++++|.+.|++..+. .+..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 33444444444444444444444444441 133344444444444 455555555555554432 34444445
Q ss_pred HHHHHc----CCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 247 IKGFLD----IKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSS----AGLMGKCQEIFDDMVKAGIEPDIHVFSILAK 318 (548)
Q Consensus 247 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (548)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...++++.+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 555554 555555555555555442 44455555555555 566666666666666543 3455555666
Q ss_pred HHHH----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 319 GYVR----AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN----AVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 319 ~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
.|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|+++.+.+ +...+..+...|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 6665 666666666666666542 34555566666666 666666666666666643 255566666666
Q ss_pred Hh----cCChHHHHHHHHHHHHC
Q 008925 391 GE----AKQPWRAEELLQVMEEK 409 (548)
Q Consensus 391 ~~----~g~~~~A~~~~~~~~~~ 409 (548)
.. .+++++|.++|++..+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHc
Confidence 66 66666677766666654
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=2.4e-14 Score=128.28 Aligned_cols=204 Identities=9% Similarity=0.010 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 240 LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKG 319 (548)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (548)
...+..++..+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4566677777777888888888888777764 3356777778888888888888888888888765 5567788888888
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 320 YVRAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWR 398 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (548)
|...|++++|..+++++.+.+..| +...+..++..+...|++++|...|+++.+.. +.+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887732234 34567778888888888888888888888765 5567788888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 399 AEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 399 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
|...++++.+.. +.+...+..++.++...|++++|.++++++.+..|.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 888888887642 344557777888888888888888888887765543
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=4.9e-14 Score=126.24 Aligned_cols=201 Identities=13% Similarity=-0.012 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGY 109 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (548)
..+..++..+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 455666666666666666666666666542 3355566666666666666666666666666542 23455666666666
Q ss_pred hccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008925 110 GNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRA 189 (548)
Q Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 189 (548)
...|++++|+..++++......+.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665411112234555566666666666666666666665543 33455556666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 190 EQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
...++.+.+... .+...+..+...+...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666555432 24455555555666666666666666665553
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=1.9e-15 Score=137.45 Aligned_cols=224 Identities=11% Similarity=-0.026 Sum_probs=144.2
Q ss_pred ccccCChhhHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHR---PTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV 80 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (548)
+...|++++|+..|+.+++.... .+..++..++..+...|++++|+..|+++.+.. +.+..++..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 44567788888888888775321 134567777777888888888888888877763 44667777777778888888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYK 160 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (548)
++|+..|+++.+.. +.+..++..+..++...|++++|+..|+++... .|+.......+..+...|++++|...+++
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88888888777653 335667777777777777777777777777664 23333333344444556777777777766
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 161 MVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP---NERTCGIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
..... +++...+ .++..+...++.++|...++......... +..++..++.++...|++++|...|+++...
T Consensus 170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 66543 3333333 35555666666666766666655432110 1345556666666666666666666666654
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=5.3e-14 Score=123.48 Aligned_cols=204 Identities=12% Similarity=0.005 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
+...+..++..+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45677888888888888888888888888763 4567788888888888888888888888887763 446777888888
Q ss_pred HHhcc-CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008925 108 GYGNV-GKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGET 186 (548)
Q Consensus 108 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 186 (548)
.+... |++++|+..++++......+.+...+..++.++...|++++|+..++++.+.. +.+...+..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888887622223335677788888888888888888888887764 34577777788888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 187 YRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
++|...++.+.+..+..+...+..+...+...|+.+.|..+++.+...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888888887776543236666677777777788888888887777653
No 52
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=160.92 Aligned_cols=118 Identities=9% Similarity=0.120 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMV---KAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTV 351 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 351 (548)
..+|+++|++|++.|++++|..+|..|. ..|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4566666666666666666666665554 2355666666666666666666666666666666666666666666666
Q ss_pred HHHHhccCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 352 ISGWCNAVKM-QRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 352 ~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 6666666653 5666666666666666666666666654444
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=9.2e-15 Score=130.17 Aligned_cols=198 Identities=12% Similarity=0.129 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 206 RTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAW 285 (548)
Q Consensus 206 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (548)
..+..++..+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+..+ .+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHH
Confidence 344444555555555555555555555432 33445555555555555555555555555554432 2445555555666
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH
Q 008925 286 SSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAM 365 (548)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 365 (548)
...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665553 4455556666666666666666666666665532 224455556666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 366 SIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
..|+++.+.. +.+..++..++.+|...|++++|...++++.+
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 6666666543 44455666666666666666666666666655
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=5.7e-14 Score=123.28 Aligned_cols=202 Identities=9% Similarity=-0.013 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 240 LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKG 319 (548)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (548)
...+..++..+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3444455555555555555555555554443 1234455555555666666666666666665543 3445556666666
Q ss_pred HHHc-CCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 008925 320 YVRA-GEPQKAESILTSMRKYGVHPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPW 397 (548)
Q Consensus 320 ~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 397 (548)
+... |++++|...++++.+.+..|+ ...+..++..+...|++++|+..|+++.+.. +.+...+..++.++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 666666666666655211222 3455556666666666666666666666543 344556666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008925 398 RAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 398 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (548)
+|...++++.+.....+...+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666666655321123445555555556666666666666665433
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=1.2e-14 Score=129.44 Aligned_cols=210 Identities=10% Similarity=0.054 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008925 171 VTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGF 250 (548)
Q Consensus 171 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (548)
..|..++..+...|++++|...++++.+.... +...+..++..+...|++++|+..++++.+.. +.+..++..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 33444444455555555555555555443222 34445555555555555555555555555432 33445555555555
Q ss_pred HcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 008925 251 LDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAE 330 (548)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 330 (548)
...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 55666666666665555543 2245556666666667777777777777666654 445666677777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008925 331 SILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETL 386 (548)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 386 (548)
..++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 7777766642 2345566777777777777777777777777654 3444444443
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=1.7e-15 Score=146.29 Aligned_cols=282 Identities=11% Similarity=0.084 Sum_probs=179.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-
Q 008925 132 KPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD----AVTYNTLARAYAQYGETYRAEQMLFEMQNN----QVR- 202 (548)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~- 202 (548)
......+...+..+...|++++|+..|+++++.. +.+ ..++..+...+...|++++|...++++... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3445556666667777777777777777776653 222 245566666677777777777766665432 111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC-CCCHHHHHHH
Q 008925 203 PNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV-KPDVVTFSTI 281 (548)
Q Consensus 203 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l 281 (548)
....++..+...+...|++++|...++++.+.. + ..+. .....++..+
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~-----------------------------~~~~~~~~~~~~~~l 133 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS--R-----------------------------ELNDKVGEARALYNL 133 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H-----------------------------HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--H-----------------------------hcccccchHHHHHHH
Confidence 113344555555666666666666665554321 0 0000 0012344555
Q ss_pred HHHHHhCCC--------------------hhHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 008925 282 MDAWSSAGL--------------------MGKCQEIFDDMVKA----GI-EPDIHVFSILAKGYVRAGEPQKAESILTSM 336 (548)
Q Consensus 282 ~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 336 (548)
...+...|+ +++|...+.+..+. +. +....++..+...|...|++++|...++++
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555566 66676666665532 10 112346778888888899999999988887
Q ss_pred HhCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008925 337 RKYGV-HPN----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI-NPN----LKTYETLLWGYGEAKQPWRAEELLQVM 406 (548)
Q Consensus 337 ~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (548)
.+... .++ ..++..++..+...|++++|...++++.+... .++ ..++..++..|...|++++|...++++
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 64210 112 23678888889999999999999999875310 112 457788899999999999999999988
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008925 407 EEK----GVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 407 ~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
.+. +-.+. ..++..++.++...|++++|...++++.+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 742 11111 4477788999999999999999999987544
No 57
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=2.3e-16 Score=158.73 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=126.4
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 008925 239 NLVVFNSLIKGFLDIKDSDGVDKALTLMEE---FGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSI 315 (548)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (548)
-..+|++++.+|++.|+.++|.++|..|.+ .|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..+|++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 347999999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCH-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC------HHHHHHHHH
Q 008925 316 LAKGYVRAGEP-QKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN------LKTYETLLW 388 (548)
Q Consensus 316 l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~ 388 (548)
||.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+ +..++..+++ .-++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999984 7899999999999999999999999876544 3444444444 2234443 334455666
Q ss_pred HHHhcCC
Q 008925 389 GYGEAKQ 395 (548)
Q Consensus 389 ~~~~~g~ 395 (548)
.|.+.+.
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 6766653
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=9.6e-15 Score=132.77 Aligned_cols=245 Identities=11% Similarity=-0.076 Sum_probs=138.5
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHH
Q 008925 184 GETYRAEQMLFEMQNNQVR---PNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVD 260 (548)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 260 (548)
|++++|+..++++.+.... .+..++..++..+...|++++|...|+++.+.. +.+..++..++..+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555554443211 123444455555555555555555555555533 334555555666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 008925 261 KALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYG 340 (548)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (548)
..++.+.+..+ .+...+..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 66665555432 244566666667777777777777777776653 222223333334455677777777776666542
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008925 341 VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGIN---PNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKST 417 (548)
Q Consensus 341 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 417 (548)
+++...+ .++..+...++.++|...++++.+.... .+..++..++.+|...|++++|...|+++.+. .|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--
Confidence 2233333 3555666667777777777776653210 11466777788888888888888888888764 3432
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 008925 418 IQLVADSWRAIGLAREAKRVL 438 (548)
Q Consensus 418 ~~~l~~~~~~~g~~~~A~~~~ 438 (548)
+...+.++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 222355666777777777665
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=3.8e-13 Score=124.27 Aligned_cols=224 Identities=12% Similarity=-0.002 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCh-------hhHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 008925 222 EDAMRFLYRMKELEVHPNLVVFNSLIKGFL-------DIKDS-------DGVDKALTLMEE-FGVKPDVVTFSTIMDAWS 286 (548)
Q Consensus 222 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 286 (548)
++|..+|++++... +.++..|..++..+. ..|++ ++|..++++..+ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 67778888887753 566778887777765 35776 889999999888 33 335678888999999
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCChHHH
Q 008925 287 SAGLMGKCQEIFDDMVKAGIEPDIH-VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGW-CNAVKMQRA 364 (548)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A 364 (548)
..|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|+++.+.. +++...|...+... ...|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999863 33444 89999999999999999999999999864 23445555444332 236999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG-VRPK--KSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
..+|+++++.. +.+...|..++..+.+.|++++|..+|+++++.. +.|+ ...|..++......|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999864 5678889999999999999999999999999863 4553 558888899999999999999999999
Q ss_pred HhccCCCCC
Q 008925 442 EEDRQSMPN 450 (548)
Q Consensus 442 ~~~~~~~~~ 450 (548)
.+..|..+.
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 987776543
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=7e-15 Score=141.95 Aligned_cols=304 Identities=11% Similarity=0.057 Sum_probs=167.6
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC
Q 008925 26 RPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPD----SILFNAMINACSESGNVDEAMKIFQKMKDS----GCKP 97 (548)
Q Consensus 26 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~ 97 (548)
.+....+...+..+...|++++|+..|+++.+.+ +.+ ..++..+...+...|++++|...++++... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3455667778888888888899988888888763 333 346777888888888888888888876542 1111
Q ss_pred -CHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhCCC--------------------HH
Q 008925 98 -TTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPN----DRTYNILVRAWCSKNS--------------------IE 152 (548)
Q Consensus 98 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~--------------------~~ 152 (548)
...++..+...+...|++++|+..+++........++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2345667777777888888888777766542100111 3356666666666666 66
Q ss_pred HHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHH
Q 008925 153 EAWNVVYKMVAS----GIQ-PDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR-PN----ERTCGIIVSGYCKEGNME 222 (548)
Q Consensus 153 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~ 222 (548)
+|...+++..+. +.. ....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 666666554431 100 01234445555555555555555555544322100 01 123444444444445555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 008925 223 DAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKP-DVVTFSTIMDAWSSAGLMGKCQEIFDDM 301 (548)
Q Consensus 223 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (548)
+|...+++..... ...+..+ ...++..+...+...|++++|...++++
T Consensus 245 ~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 245 TASEYYKKTLLLA-------------------------------RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------------------------HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 5544444443210 0000000 0334555666666666666666666665
Q ss_pred HHcCC-CCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCh
Q 008925 302 VKAGI-EPD----IHVFSILAKGYVRAGEPQKAESILTSMRKY----GVHP-NVVMFTTVISGWCNAVKM 361 (548)
Q Consensus 302 ~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 361 (548)
.+... ..+ ..++..+...|...|++++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 53210 011 345566666677777777777766665431 1111 133555566666655554
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=1.6e-14 Score=139.78 Aligned_cols=279 Identities=13% Similarity=0.092 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHH
Q 008925 136 RTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDA----VTYNTLARAYAQYGETYRAEQMLFEMQNN----Q-VRPNER 206 (548)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~ 206 (548)
..+..+...+...|++++|+..|+++++.. +.+. ..+..+...+...|++++|...+++..+. + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 344455566667777777777777766653 2222 35566666666667777776666665432 0 011233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC-CCCHHHHHHHHHHH
Q 008925 207 TCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV-KPDVVTFSTIMDAW 285 (548)
Q Consensus 207 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~ 285 (548)
++..+...|...|++++|...++++.... .+.+. .....++..+...+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHH
Confidence 44455555555566666665555544310 00000 11123455555566
Q ss_pred HhCCC-----------------hhHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-C
Q 008925 286 SSAGL-----------------MGKCQEIFDDMVKA----GI-EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGV-H 342 (548)
Q Consensus 286 ~~~~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 342 (548)
...|+ +++|...+++..+. +. +....++..+...|...|++++|...+++..+... .
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 66666 66666666665432 11 11234677778888888888888888887765310 0
Q ss_pred CC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----
Q 008925 343 PN----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI-NP----NLKTYETLLWGYGEAKQPWRAEELLQVMEEK---- 409 (548)
Q Consensus 343 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 409 (548)
++ ..++..++..|...|++++|...|+++++... .. ...++..++.+|...|++++|..+++++.+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 11 22677888888899999999999988876420 01 1456788888999999999999999888642
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 410 GVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 410 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
+..+. ..++..++.++...|++++|..+++++.+..+
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11111 33677888999999999999999999876543
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=1.3e-11 Score=124.27 Aligned_cols=396 Identities=9% Similarity=0.011 Sum_probs=274.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC---hHHHHHH
Q 008925 45 FKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGK---PEESLKL 121 (548)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~ 121 (548)
..+.+..|+..+..+ +.|...|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.+. .+.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 334455566666654 679999999999999999999999999999987 56778889999999888888 9999999
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------
Q 008925 122 LQLMSQDKNVKPNDRTYNILVRAWCSKNSI--------EEAWNVVYKMVA-SGI-QP-DAVTYNTLARAYA--------- 181 (548)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~--------- 181 (548)
|++.......+|++..|...+....+.++. +...++|+..+. .|. .+ +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999987632248999998888876665543 334577777664 355 44 3567877776543
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HH----------HhcCCHHHHHHHHHHHHhC--C----CC-----
Q 008925 182 QYGETYRAEQMLFEMQNNQVRPNERTCGIIVS---GY----------CKEGNMEDAMRFLYRMKEL--E----VH----- 237 (548)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~----------~~~g~~~~A~~~~~~~~~~--~----~~----- 237 (548)
..++.+.+..+|+.++......-..+|..... .. -...+++.|...+.++... + .+
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 23457788999999886422211223322111 10 0112344455555443211 1 11
Q ss_pred ------C-----C---HHHHHHHHHHHHcCCC-------hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHH-
Q 008925 238 ------P-----N---LVVFNSLIKGFLDIKD-------SDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQ- 295 (548)
Q Consensus 238 ------~-----~---~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~- 295 (548)
| + ...|...+..-...+. .+.+..++++..... +.....|...+..+...|+.+.|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 1345555544333221 223456788777764 347788888888888889999996
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHH
Q 008925 296 EIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGV---------HPN------------VVMFTTVISG 354 (548)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~p~------------~~~~~~l~~~ 354 (548)
.++++++... |.+...+..++...-+.|++++|..+|+.+++... .|+ ...|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999999764 66777788889999999999999999999886310 132 2367777888
Q ss_pred HhccCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008925 355 WCNAVKMQRAMSIYEKMCEI-GINPNLKTYETLLWGYGEA-KQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAR 432 (548)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 432 (548)
..+.|+.+.|..+|.++.+. + ......|...+..-.+. ++++.|..+|+..++. .+.+...+...++.....|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 88889999999999999985 2 23345555444444454 4589999999999875 3345667778889889999999
Q ss_pred HHHHHHHHHHhccC
Q 008925 433 EAKRVLKSAEEDRQ 446 (548)
Q Consensus 433 ~A~~~~~~~~~~~~ 446 (548)
.|..+|+++.+..+
T Consensus 522 ~AR~lferal~~~~ 535 (679)
T 4e6h_A 522 QVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999886544
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=1.7e-13 Score=116.21 Aligned_cols=169 Identities=17% Similarity=0.151 Sum_probs=133.6
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 274 DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVIS 353 (548)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 353 (548)
+...|..+...+...|++++|+..|+++++.+ |.+..++..++.+|...|++++|...++.+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45677888888888888888888888888775 6677788888888888888888888888887753 234566777777
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008925 354 GWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLARE 433 (548)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 433 (548)
.+...++++.|...++++.+.. +.+...+..++.+|...|++++|++.|++.++.. +.+..++..++.++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 8888888888888888888765 5667788888888888888888888888888753 2345578888888888888888
Q ss_pred HHHHHHHHHhccC
Q 008925 434 AKRVLKSAEEDRQ 446 (548)
Q Consensus 434 A~~~~~~~~~~~~ 446 (548)
|++.++++.+.+|
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 8888888776543
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.61 E-value=3.6e-14 Score=132.91 Aligned_cols=278 Identities=12% Similarity=0.098 Sum_probs=167.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHH
Q 008925 137 TYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD----AVTYNTLARAYAQYGETYRAEQMLFEMQNN----QVR-PNERT 207 (548)
Q Consensus 137 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~ 207 (548)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445556666677777777776666643 222 244555666666666666666666654332 000 11234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Q 008925 208 CGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK-PDVVTFSTIMDAWS 286 (548)
Q Consensus 208 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 286 (548)
+..+...+...|++++|...++++.+.. .+.+.. ....++..+...+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDIS-------------------------------RELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH-------------------------------HHhcCchHHHHHHHHHHHHHH
Confidence 4444555555555555555555543310 000000 00224445555555
Q ss_pred hCCC--------------------hhHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 008925 287 SAGL--------------------MGKCQEIFDDMVKA----GI-EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGV 341 (548)
Q Consensus 287 ~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 341 (548)
..|+ +++|...+++.... +. +....++..+...+...|++++|...++++.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5555 66666666655432 10 11234677778888888888888888887764210
Q ss_pred -CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--
Q 008925 342 -HPN----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI-NPN----LKTYETLLWGYGEAKQPWRAEELLQVMEEK-- 409 (548)
Q Consensus 342 -~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 409 (548)
.++ ..++..++..+...|++++|...++++.+... .++ ..++..++..+...|++++|...++++.+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 011 23677788888889999999999988875310 112 456778888999999999999999888642
Q ss_pred --CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 410 --GVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 410 --~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
+-.+. ..++..++.++...|++++|...++++.+..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 11111 33677888999999999999999999876544
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=1.7e-14 Score=139.56 Aligned_cols=278 Identities=12% Similarity=0.022 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----C-CCCC
Q 008925 99 TSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPND----RTYNILVRAWCSKNSIEEAWNVVYKMVAS----G-IQPD 169 (548)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~ 169 (548)
...+..+...+...|++++|+..|+++.+.. +.+. ..+..+...+...|++++|+..+++.++. + .+..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3455667888999999999999999998753 3333 47888999999999999999999998753 1 1223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 008925 170 AVTYNTLARAYAQYGETYRAEQMLFEMQNNQ-----VRPNERTCGIIVSGYCKEGN-----------------MEDAMRF 227 (548)
Q Consensus 170 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~ 227 (548)
..++..+...|...|++++|...++++.+.. ......++..+...|...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 5678889999999999999999999876531 11123456667777777777 5666655
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 008925 228 LYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV-KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI 306 (548)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 306 (548)
+++..+. .... +. .....++..+...+...|++++|...++++++...
T Consensus 206 ~~~al~~----------------------------~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 206 YQENLKL----------------------------MRDL---GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHH----------------------------HHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------HHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5554321 1000 10 11224566666777777777777777777664310
Q ss_pred -CCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC----C-CCHHHHHHHHHHHhccCChHHHHHHHHHHHHc--
Q 008925 307 -EPD----IHVFSILAKGYVRAGEPQKAESILTSMRKYGV----H-PNVVMFTTVISGWCNAVKMQRAMSIYEKMCEI-- 374 (548)
Q Consensus 307 -~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 374 (548)
.++ ..++..++..|...|++++|...++++.+... . ....++..+...+...|++++|..+++++++.
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 011 23667778888888888888888887765210 0 11456778888888899999999999888763
Q ss_pred --CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 375 --GIN-PNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 375 --~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
+.. ....++..+..+|...|++++|..++++..+.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 101 11346778889999999999999999988763
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.59 E-value=2.8e-13 Score=129.55 Aligned_cols=234 Identities=10% Similarity=-0.034 Sum_probs=170.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC-C-----CHHHHH
Q 008925 211 IVSGYCKEGNMEDAMRFLYRMKEL----EVHP-NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK-P-----DVVTFS 279 (548)
Q Consensus 211 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 279 (548)
.+..+...|++++|+..|+++... +.++ ...++..+...|...|+++.|...+.+..+.... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556667778888888888777653 1111 2356777777888888888888887776553111 1 135678
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CC-CCCHHHHH
Q 008925 280 TIMDAWSSAGLMGKCQEIFDDMVKAGI-EPD----IHVFSILAKGYVRAGEPQKAESILTSMRKY----GV-HPNVVMFT 349 (548)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~ 349 (548)
.+..+|...|++++|...++++++... .++ ..++..++.+|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888899999999999999998875310 112 247888999999999999999999998762 22 22355788
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 008925 350 TVISGWCNAVKMQRAMSIYEKMCEI----GINPNLKTYETLLWGYGEAKQ---PWRAEELLQVMEEKGVRPK-KSTIQLV 421 (548)
Q Consensus 350 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 421 (548)
.++..+...|++++|...++++++. +-+.....+..+...+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999998864 211222346778888999999 77777777665 33343 3377789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 422 ADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
+.++...|++++|..+++++.+....
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998755443
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=5.4e-13 Score=113.00 Aligned_cols=165 Identities=15% Similarity=0.127 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 240 LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKG 319 (548)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (548)
..+|..+...|...|++++|++.+++..+..+. +..++..+..++...|++++|...+..+.... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 334444444444444444444444444444321 34445555555555555555555555555443 3344455555555
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 320 YVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRA 399 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 399 (548)
+...++++.|...+.++.+.. +.+...+..++..+...|++++|++.|+++++.. |.+..+|..++.+|...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555555432 2234455555555555555555555555555543 44455555555556666666666
Q ss_pred HHHHHHHHH
Q 008925 400 EELLQVMEE 408 (548)
Q Consensus 400 ~~~~~~~~~ 408 (548)
+..|+++++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666655554
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.57 E-value=3.4e-13 Score=129.02 Aligned_cols=299 Identities=11% Similarity=0.032 Sum_probs=147.4
Q ss_pred HHccCCHHHHHHHHHHHHHC--CCCCCH--HHHHHHHHH--HHhcCChHHHH-----------HHHHHHHhcCCCCCHHH
Q 008925 39 LTRQKRFKSILSLISKVEKD--GMKPDS--ILFNAMINA--CSESGNVDEAM-----------KIFQKMKDSGCKPTTST 101 (548)
Q Consensus 39 ~~~~g~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~ 101 (548)
+.+.+++++|..+++++.+. ....|. ..|..++.. ....++++.+. +.++.+... +.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 34678999999999888653 222333 333444332 12233344444 555555432 111111
Q ss_pred ------HHHHHHHHhccCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--C---
Q 008925 102 ------YNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPN----DRTYNILVRAWCSKNSIEEAWNVVYKMVASG--I--- 166 (548)
Q Consensus 102 ------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~--- 166 (548)
+......+...|++++|+..|++........++ ..++..++..+...|++++|+..+.+..+.- .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 122455566677777777777776543111122 3456666666777777777777666655421 0
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008925 167 -QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR-PN----ERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNL 240 (548)
Q Consensus 167 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 240 (548)
+....+++.++.+|...|++++|...+++..+.... ++ ..++..++.+|...|++++|+..|++..+.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~------ 253 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV------ 253 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------
Confidence 001234555556666666666666665554432100 01 124444555555555555555555554431
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCCHHHHHH
Q 008925 241 VVFNSLIKGFLDIKDSDGVDKALTLMEEFGV-KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKA----GIEPDIHVFSI 315 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 315 (548)
....+. +....++..+..++...|++++|...+++..+. +-+.....+..
T Consensus 254 -------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 308 (383)
T 3ulq_A 254 -------------------------FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308 (383)
T ss_dssp -------------------------HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -------------------------HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 000011 112344555555555555555555555555432 10111122344
Q ss_pred HHHHHHHcCC---HhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 316 LAKGYVRAGE---PQKAESILTSMRKYGVHPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 316 l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
+...+...|+ +++|+.++++.. ..|+ ...+..+...|...|++++|...|+++.+
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555 455555554441 1222 22445566666666666666666666654
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=7.6e-14 Score=130.73 Aligned_cols=278 Identities=10% Similarity=0.052 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC-CHH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPD----SILFNAMINACSESGNVDEAMKIFQKMKDS----GCKP-TTS 100 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 100 (548)
..+...+..+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +..+ ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345556677777888888888888877753 223 346667777778888888888887776542 1111 234
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhCCC--------------------HHHHHH
Q 008925 101 TYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPN----DRTYNILVRAWCSKNS--------------------IEEAWN 156 (548)
Q Consensus 101 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~ 156 (548)
++..+...+...|++++|+..+++........++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 5666677777777777777777665432100111 2355556666666666 555555
Q ss_pred HHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008925 157 VVYKMVAS----GI-QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVR-PNERTCGIIVSGYCKEGNMEDAMRFLYR 230 (548)
Q Consensus 157 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 230 (548)
.+++.... +. +....++..+...+...|++++|...+++..+.... ++.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------------------------- 219 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK------------------------- 219 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH-------------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh-------------------------
Confidence 55554321 00 001223444444445555555555544443321000 000
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 008925 231 MKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK-P----DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG 305 (548)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (548)
.....++..+...+...|++++|...++...+.... . ...++..+...+...|++++|...++++.+..
T Consensus 220 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 220 ------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp ------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 001124444555555555555555555544332100 0 13456667777777788888877777766431
Q ss_pred ----CC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 008925 306 ----IE-PDIHVFSILAKGYVRAGEPQKAESILTSMRKY 339 (548)
Q Consensus 306 ----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (548)
.+ ....++..+...|...|++++|...++++.+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 00 11346677778888888888888888887764
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=1.6e-13 Score=134.50 Aligned_cols=215 Identities=10% Similarity=-0.018 Sum_probs=137.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 008925 44 RFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV-DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLL 122 (548)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 122 (548)
++++++..++...... +.+...+..+...+...|++ ++|++.|+++++.. +.+..+|..+..+|...|++++|+..|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556666666555432 34566666666666677777 77777777766653 334566666777777777777777777
Q ss_pred HHhhhCCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CC
Q 008925 123 QLMSQDKNVKPNDRTYNILVRAWCSK---------NSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQY--------GE 185 (548)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~ 185 (548)
++..+. .|+...+..+..++... |++++|+..|++.++.. +.+...|..+..+|... |+
T Consensus 161 ~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 766653 35556666666666666 67777777777766653 34566666666666666 66
Q ss_pred HHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHH
Q 008925 186 TYRAEQMLFEMQNNQVR--PNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKAL 263 (548)
Q Consensus 186 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 263 (548)
+++|+..|++..+..+. .+...+..+..+|...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777776664321 256666677777777777777777777766643 344556666666666666666666554
Q ss_pred HH
Q 008925 264 TL 265 (548)
Q Consensus 264 ~~ 265 (548)
..
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=3.3e-13 Score=132.33 Aligned_cols=213 Identities=8% Similarity=-0.047 Sum_probs=164.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 008925 220 NMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDS-DGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIF 298 (548)
Q Consensus 220 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (548)
.+++++..+++..... +.+...+..+...+...|++ ++|.+.+++..+..+ .+...+..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556666666655532 44667777788888888888 888888888777653 35677888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHc---------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------CCh
Q 008925 299 DDMVKAGIEPDIHVFSILAKGYVRA---------GEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA--------VKM 361 (548)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~ 361 (548)
+++++. .|+...+..+..+|... |++++|+..++++.+.. +.+...|..++.+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 888876 45667788888888888 88888888888888753 23566788888888877 889
Q ss_pred HHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 008925 362 QRAMSIYEKMCEIGIN---PNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRV 437 (548)
Q Consensus 362 ~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 437 (548)
++|+..|+++++.. + .+...|..++.+|...|++++|...|+++.+. .|+ ...+..++.++...|++++|++.
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988864 4 47888888889999999999999999988875 344 45788888888888888888876
Q ss_pred HHH
Q 008925 438 LKS 440 (548)
Q Consensus 438 ~~~ 440 (548)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 654
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=3.2e-12 Score=118.04 Aligned_cols=218 Identities=6% Similarity=0.037 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008925 11 HEAHYIFNCLIEEGHRPTLITYTTLVAALTR-------QKRF-------KSILSLISKVEKDGMKPDSILFNAMINACSE 76 (548)
Q Consensus 11 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (548)
++|+.+|++++...+ .+...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 577788888877643 366777777776653 4665 7777778777763123355677777777777
Q ss_pred cCChHHHHHHHHHHHhcCCCCC-HH-HHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH-hCCCHHH
Q 008925 77 SGNVDEAMKIFQKMKDSGCKPT-TS-TYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWC-SKNSIEE 153 (548)
Q Consensus 77 ~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 153 (548)
.|++++|..+|+++++. .|+ .. +|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 77888888888777764 333 33 67777777777777777777777776642 233344433333222 2577777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008925 154 AWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQ-VRP--NERTCGIIVSGYCKEGNMEDAMRFLYR 230 (548)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 230 (548)
|..+|++.++.. +.+...|..++..+...|++++|..+|++..... ..| ....|..++....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777766643 3356666666666777777777777777766642 232 345566666666666777777777766
Q ss_pred HHhC
Q 008925 231 MKEL 234 (548)
Q Consensus 231 ~~~~ 234 (548)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.50 E-value=6.5e-12 Score=119.73 Aligned_cols=230 Identities=9% Similarity=0.011 Sum_probs=166.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC-----CC-CHHHH
Q 008925 210 IIVSGYCKEGNMEDAMRFLYRMKELEV-HP----NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV-----KP-DVVTF 278 (548)
Q Consensus 210 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~ 278 (548)
..+..+...|++++|+..|+++.+... .+ ...++..+...|...|+++.|...+.+..+... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345566777888888888888765311 11 235677778888888888888888877654311 11 24567
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHh-----CCCCCCHHHH
Q 008925 279 STIMDAWSSAGLMGKCQEIFDDMVKA----GIEP-DIHVFSILAKGYVRAGEPQKAESILTSMRK-----YGVHPNVVMF 348 (548)
Q Consensus 279 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 348 (548)
+.+..+|...|++++|...+.++++. +.++ ...++..++.+|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 78888999999999999999888753 1111 134678889999999999999999999876 43 2235678
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIG----INPNLKTYETLLWGYGEAKQ---PWRAEELLQVMEEKGVRPK-KSTIQL 420 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~ 420 (548)
..++..+...|++++|...++++.+.. -+.....+..+...+...|+ +.+|+.++++. +..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 889999999999999999999998742 12223456667777778888 77777777652 22333 336678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 008925 421 VADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 421 l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
++..+...|++++|...++++.+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999999753
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=1.4e-13 Score=127.54 Aligned_cols=56 Identities=13% Similarity=0.101 Sum_probs=25.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008925 388 WGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
..+...+.+.++...++..... .|+ ..++..++.++...|++++|.++++++.+..
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp ------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 3344455555666666655542 232 3356666777777777777777777766543
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=7.8e-13 Score=122.40 Aligned_cols=205 Identities=15% Similarity=0.092 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHc------C
Q 008925 204 NERTCGIIVSGYCKEGNMEDAMRFLYRMKEL-------EVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEF------G 270 (548)
Q Consensus 204 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 270 (548)
+..++..++..+...|++++|..+|+++.+. ..+....++..+...+...|++++|...++.+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899999999999999999999773 22344578888999999999999999999988764 2
Q ss_pred C-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC---
Q 008925 271 V-KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKA------GIEP-DIHVFSILAKGYVRAGEPQKAESILTSMRKY--- 339 (548)
Q Consensus 271 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 339 (548)
. +....++..+...+...|++++|...++++++. +..| ...++..++..+...|++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223567888899999999999999999998864 2122 3457788899999999999999999998763
Q ss_pred ---CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHc-----------------------------------------
Q 008925 340 ---GVHPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCEI----------------------------------------- 374 (548)
Q Consensus 340 ---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------------------------- 374 (548)
+..|+ ..++..++..+...|++++|..+++++.+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 21232 346788899999999999999999999863
Q ss_pred -------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 375 -------GINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 375 -------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
..+.+..++..++.+|...|++++|..++++..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122346688899999999999999999998875
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.48 E-value=1.6e-11 Score=117.01 Aligned_cols=233 Identities=8% Similarity=0.000 Sum_probs=111.6
Q ss_pred HHHHhccCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CC----CCHHHHHH
Q 008925 106 IKGYGNVGKPEESLKLLQLMSQDKNVKPN----DRTYNILVRAWCSKNSIEEAWNVVYKMVASG--IQ----PDAVTYNT 175 (548)
Q Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~----~~~~~~~~ 175 (548)
...+...|++++|+..|++........++ ..++..++..+...|+++.|+..+++..+.. .. ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 33444556666666666555432111111 2344555555555555555555555544320 00 01234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCC
Q 008925 176 LARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVH-PNLVVFNSLIKGFLDIK 254 (548)
Q Consensus 176 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 254 (548)
++.+|...|++++|.+.+++..+.. ...+.+ ....++..+...|...|
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELA-------------------------------MDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH-------------------------------HHcCCHHHHHHHHHHHHHHHHHCC
Confidence 5555555555555555554443210 000000 01133444444455555
Q ss_pred ChhhHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCC
Q 008925 255 DSDGVDKALTLMEE-----FGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG----IEPDIHVFSILAKGYVRAGE 325 (548)
Q Consensus 255 ~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~ 325 (548)
++++|...+++..+ .. +....++..+..++...|++++|...+++..+.. -+.....+..+...+...++
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 55555555544433 21 1124555566666666666666666666665431 11122344455555555555
Q ss_pred ---HhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 326 ---PQKAESILTSMRKYGVHPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 326 ---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
+.+|+.++++.. ..|+ ...+..++..|...|++++|...|+++.+
T Consensus 316 ~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 316 ERKIHDLLSYFEKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555421 2222 23445666667777777777777776664
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=5.4e-12 Score=106.73 Aligned_cols=168 Identities=17% Similarity=0.138 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGW 355 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 355 (548)
..+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456667777888888888888888887664 5567788888888888899999999888887753 33567788888888
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008925 356 CNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAK 435 (548)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 435 (548)
...|++++|.++++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 88899999999999988875 6677888888889999999999999999988753 334668888889999999999999
Q ss_pred HHHHHHHhccCC
Q 008925 436 RVLKSAEEDRQS 447 (548)
Q Consensus 436 ~~~~~~~~~~~~ 447 (548)
..++++.+..|.
T Consensus 165 ~~~~~~~~~~~~ 176 (186)
T 3as5_A 165 PHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC
Confidence 999987755443
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.46 E-value=3.5e-11 Score=114.51 Aligned_cols=272 Identities=11% Similarity=0.031 Sum_probs=128.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH----HHHHH
Q 008925 140 ILVRAWCSKNSIEEAWNVVYKMVASGIQPDA----VTYNTLARAYAQYGETYRAEQMLFEMQNNQVR-PNE----RTCGI 210 (548)
Q Consensus 140 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~ 210 (548)
.....+...|++++|...+++.+......+. .++..+...+...|++++|...+++....... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3344455566666666666666554311111 13344455555556666666655554432100 011 11333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHh
Q 008925 211 IVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVK--P-DVVTFSTIMDAWSS 287 (548)
Q Consensus 211 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~ 287 (548)
+...+...|++++|...+++..... .+.+.. | ....+..+...+..
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLI-------------------------------NEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhccccCcHHHHHHHHHHHHHHH
Confidence 4444455555555555554443210 001111 1 12233445555555
Q ss_pred CCChhHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHhc
Q 008925 288 AGLMGKCQEIFDDMVKAGIE----PDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN-VVMFT-----TVISGWCN 357 (548)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~-----~l~~~~~~ 357 (548)
.|++++|...+++.+..... ....++..+...+...|++++|...+++.......++ ...+. ..+..+..
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 56666666666555543111 0123455555666666666666666665543211111 01111 12233455
Q ss_pred cCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcC
Q 008925 358 AVKMQRAMSIYEKMCEIGINP---NLKTYETLLWGYGEAKQPWRAEELLQVMEEK----GVRPKK-STIQLVADSWRAIG 429 (548)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g 429 (548)
.|++++|...++++......+ ....+..+..++...|++++|...++++.+. +..++. ..+..++.++...|
T Consensus 228 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 228 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 307 (373)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhC
Confidence 666666666666655432111 1223455566666666666666666665421 111112 24445566666667
Q ss_pred CHHHHHHHHHHHH
Q 008925 430 LAREAKRVLKSAE 442 (548)
Q Consensus 430 ~~~~A~~~~~~~~ 442 (548)
+.++|...++++.
T Consensus 308 ~~~~A~~~l~~al 320 (373)
T 1hz4_A 308 RKSDAQRVLLDAL 320 (373)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777777766655
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.45 E-value=6.8e-11 Score=112.50 Aligned_cols=166 Identities=14% Similarity=0.014 Sum_probs=110.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC----HH
Q 008925 101 TYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPND----RTYNILVRAWCSKNSIEEAWNVVYKMVASGI-QPD----AV 171 (548)
Q Consensus 101 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~ 171 (548)
........+...|++++|...+++...... ..+. ..++.+...+...|++++|...+++...... ..+ ..
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344556677789999999999999877531 1222 2566777888999999999999999875311 112 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CH
Q 008925 172 TYNTLARAYAQYGETYRAEQMLFEMQNN----QVR--P-NERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHP----NL 240 (548)
Q Consensus 172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~ 240 (548)
++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 4667888999999999999999987653 211 2 23455667778888888888888888876532111 12
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHH
Q 008925 241 VVFNSLIKGFLDIKDSDGVDKALTLME 267 (548)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 267 (548)
.++..+...+...|++++|...++...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444445555555555555555443
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=3.1e-12 Score=130.40 Aligned_cols=163 Identities=10% Similarity=0.024 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISG 354 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 354 (548)
..+++.+..++...|++++|+..|+++++.. +.+..++..++.+|.+.|++++|+..|+++++.. +-+...|..++.+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455666666666666666666666666554 4445566666666666666666666666666542 1134456666666
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 008925 355 WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLARE 433 (548)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 433 (548)
+...|++++|++.|+++++.. +.+...|..++.+|...|++++|+..|+++++. .|+ ...+..++.++...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence 666666666666666666654 445556666666666666666666666666653 343 3356666666666666666
Q ss_pred HHHHHHHHH
Q 008925 434 AKRVLKSAE 442 (548)
Q Consensus 434 A~~~~~~~~ 442 (548)
|.+.++++.
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=1.5e-11 Score=108.07 Aligned_cols=201 Identities=12% Similarity=0.017 Sum_probs=151.6
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 008925 237 HPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSIL 316 (548)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (548)
+.++..+......+...|++++|...++...+..++++...+..+..++...|++++|+..++++++.+ +.+..++..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346678888888999999999999999998887654677777778888999999999999999998875 4566788889
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHPNV-------VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINP--NLKTYETLL 387 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 387 (548)
+.+|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|+..|+++++.. +. +...+..++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 999999999999999999988753 2234 457778888888999999999999998863 33 356778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 388 WGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.+|...| ...++++...+ ..+...+.. ......|.+++|+..++++.+.+|..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 8876554 34455555442 223333332 23345577899999999988776543
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=9e-12 Score=127.03 Aligned_cols=166 Identities=9% Similarity=0.010 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 239 NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAK 318 (548)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (548)
+..+++.+...+.+.|++++|++.+++..+..+. +...+..+..++.+.|++++|+..|+++++.+ +.+..+|..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456677777777777777777777777665422 46677777777777777777777777777765 556677777777
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWR 398 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (548)
+|...|++++|++.|+++++.. +-+...|..++.+|...|++++|++.|+++++.. +.+...+..++.++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 8888888888888887777653 2245677777888888888888888888887765 5566777778888888888888
Q ss_pred HHHHHHHHHH
Q 008925 399 AEELLQVMEE 408 (548)
Q Consensus 399 A~~~~~~~~~ 408 (548)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777777653
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=4.1e-11 Score=105.26 Aligned_cols=100 Identities=9% Similarity=-0.105 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 169 DAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIK 248 (548)
Q Consensus 169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (548)
|+..+...+..+...|++++|...|++..+....++...+..++.++...|++++|+..|++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3445555555555555555555555555554332344444445555555555555555555555432 223344455555
Q ss_pred HHHcCCChhhHHHHHHHHHHc
Q 008925 249 GFLDIKDSDGVDKALTLMEEF 269 (548)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~ 269 (548)
.+...|++++|...++...+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~ 105 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA 105 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 555555555555555554443
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=4.4e-11 Score=101.02 Aligned_cols=163 Identities=12% Similarity=0.082 Sum_probs=104.0
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 242 VFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYV 321 (548)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (548)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444455555555555555555544432 2245556666666666666777776666666553 445666666777777
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 322 RAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEE 401 (548)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (548)
..|++++|...++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777766542 2345566667777777777777777777777654 4556677777777777777777777
Q ss_pred HHHHHHH
Q 008925 402 LLQVMEE 408 (548)
Q Consensus 402 ~~~~~~~ 408 (548)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=7.6e-12 Score=113.85 Aligned_cols=230 Identities=12% Similarity=0.067 Sum_probs=163.2
Q ss_pred ccccCChhhHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC------CC-CCCHHHHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEE-------GHRPTLITYTTLVAALTRQKRFKSILSLISKVEKD------GM-KPDSILFNA 69 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 69 (548)
....|++++|+..|+++++. ..+....++..++..+...|++++|+..++++.+. +- +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 35678999999999988872 11224568899999999999999999999998754 21 223568889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhC------CCCCCCHH
Q 008925 70 MINACSESGNVDEAMKIFQKMKDS------G-CKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD------KNVKPNDR 136 (548)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~ 136 (548)
+...|...|++++|...|+++... . .+....++..+...+...|++++|+..+++.... ...+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999998764 1 1223567888999999999999999999988764 11122356
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCC
Q 008925 137 TYNILVRAWCSKNSIEEAWNVVYKMVAS-------GIQP-DAVTYNTLARAYAQYGET------YRAEQMLFEMQNNQVR 202 (548)
Q Consensus 137 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~ 202 (548)
++..+..++...|++++|...++++.+. ...+ ....+..+...+...+.. ..+...++..... .+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CH
Confidence 7889999999999999999999998763 1122 233344444444433332 2222222222111 12
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 203 PNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 203 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
....++..+..+|...|++++|..+|+++.+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23567888999999999999999999998763
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.33 E-value=1.3e-11 Score=112.29 Aligned_cols=229 Identities=12% Similarity=0.059 Sum_probs=157.8
Q ss_pred HhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHc------CCCC-CHHHHHHH
Q 008925 216 CKEGNMEDAMRFLYRMKEL-------EVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEF------GVKP-DVVTFSTI 281 (548)
Q Consensus 216 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 281 (548)
...|++++|+.+|++..+. ..+....++..+...+...|++++|...++.+.+. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456766676666666542 22334578889999999999999999999987764 2222 35678889
Q ss_pred HHHHHhCCChhHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC------CCCC-CHHH
Q 008925 282 MDAWSSAGLMGKCQEIFDDMVKA------G-IEPDIHVFSILAKGYVRAGEPQKAESILTSMRKY------GVHP-NVVM 347 (548)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~ 347 (548)
..++...|++++|...+.++++. . .+....++..++..|...|++++|..+++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998864 1 1223567888999999999999999999998764 1123 2457
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH--H-CC-CCCC-
Q 008925 348 FTTVISGWCNAVKMQRAMSIYEKMCEI-------GINP-NLKTYETLLWGYGEAKQPWRAEELLQVME--E-KG-VRPK- 414 (548)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~-~~p~- 414 (548)
+..++..+...|++++|..+++++.+. ...+ ....+..+...+...+....+..+.+... + .+ ..|+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999999864 1122 22344444444444444333333222111 1 11 1122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008925 415 KSTIQLVADSWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (548)
..++..++.++...|++++|..+++++.+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 337788999999999999999999998754
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.27 E-value=8e-11 Score=107.58 Aligned_cols=194 Identities=11% Similarity=0.024 Sum_probs=123.1
Q ss_pred HHHcCCChhhHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCC--HHHHHHHHH
Q 008925 249 GFLDIKDSDGVDKALTLMEEF----GVKPD-VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI---EPD--IHVFSILAK 318 (548)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~ 318 (548)
.|...|++++|...+.+..+. +.++. ..+++.+..+|...|++++|+..++++++... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666554432 21111 34666777777777777777777777764310 111 346777888
Q ss_pred HHHHc-CCHhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH------HHHHHH
Q 008925 319 GYVRA-GEPQKAESILTSMRKYGVH-PN----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL------KTYETL 386 (548)
Q Consensus 319 ~~~~~-g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l 386 (548)
+|... |++++|+..|++..+.... .+ ..++..++..+...|++++|+..|+++.+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 8888888888887753110 01 346778888888889999999999888875322111 156777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHH--HcCCHHHHHHHHHHHHhc
Q 008925 387 LWGYGEAKQPWRAEELLQVMEEKGVRPKKS------TIQLVADSWR--AIGLAREAKRVLKSAEED 444 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 444 (548)
+.++...|++++|+..|++.++. .|+.. .+..++.++. ..+++++|++.++++...
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 88888889999999988888753 34321 2344555554 346788888888765433
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.27 E-value=9.3e-10 Score=98.32 Aligned_cols=184 Identities=10% Similarity=0.032 Sum_probs=86.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 008925 259 VDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI-EPDIHVFSILAKGYVRAGEPQKAESILTSMR 337 (548)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (548)
++..+++..+.+ .++..++..+..++...|++++|++++.+.+..+. ..+...+..++..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444443332 23333344555555555566666555555544431 1234455555555556666666666665555
Q ss_pred hCCCCC-----CHHHHHHHHHHHh--ccC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 338 KYGVHP-----NVVMFTTVISGWC--NAV--KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 338 ~~~~~p-----~~~~~~~l~~~~~--~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
+. .| +..+...++.++. ..| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 42 33 1333333443321 122 555666666665443 33322222333355555666666666554432
Q ss_pred C-----CC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 409 K-----GV---RPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 409 ~-----~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
. .. .|+ +.++..++.+....|+ +|.++++++.+..|..|
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 1 00 122 3344455444444554 55556655555554444
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.26 E-value=2.9e-10 Score=103.89 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHhccCChHHH
Q 008925 44 RFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS----GCKPT-TSTYNTLIKGYGNVGKPEES 118 (548)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A 118 (548)
++++|...|++. +..|...|++++|...|++.... |-++. ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 23455566666666666665442 11111 23455555555555566666
Q ss_pred HHHHHHhh
Q 008925 119 LKLLQLMS 126 (548)
Q Consensus 119 ~~~~~~~~ 126 (548)
+..|++..
T Consensus 97 ~~~~~~Al 104 (292)
T 1qqe_A 97 VDSLENAI 104 (292)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.26 E-value=4.1e-10 Score=101.08 Aligned_cols=172 Identities=11% Similarity=0.016 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-CCC-HHHHHH
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPD---IHVFSILAKGYVRAGEPQKAESILTSMRKYGV-HPN-VVMFTT 350 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~ 350 (548)
..+..+...+...|++++|...|+.+++.. +.+ ..++..++.+|.+.|++++|+..|+++.+... .|. ...+..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 333344444444455555555555544432 222 33444444455555555555555555444211 011 223334
Q ss_pred HHHHHhc--------cCChHHHHHHHHHHHHcCCCCCHHH-----------------HHHHHHHHHhcCChHHHHHHHHH
Q 008925 351 VISGWCN--------AVKMQRAMSIYEKMCEIGINPNLKT-----------------YETLLWGYGEAKQPWRAEELLQV 405 (548)
Q Consensus 351 l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~ 405 (548)
++.++.. .|++++|+..|+++++.. |.+... +..++..|...|++++|+..|++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444 455555555555555432 112111 36678889999999999999999
Q ss_pred HHHCCCC-C-CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhccCCCC
Q 008925 406 MEEKGVR-P-KKSTIQLVADSWRAI----------GLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 406 ~~~~~~~-p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~ 449 (548)
+++.... + ....+..++.++... |++++|+..++++.+..|..+
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 9874211 1 234777888888866 899999999999988776554
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.26 E-value=3.5e-09 Score=94.58 Aligned_cols=185 Identities=9% Similarity=-0.036 Sum_probs=116.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 008925 224 AMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGV-KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMV 302 (548)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (548)
|+..|++..+.+ +++..++..+..++...|++++|.+++...+..+. .-+...+...+..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666543 34555555667777777777777777777665543 1245666677777777888888888887776
Q ss_pred HcCCCC-----CHHHHHHHHHH--HHHcC--CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 303 KAGIEP-----DIHVFSILAKG--YVRAG--EPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 303 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
+. .| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65 45 24455555544 33334 777888888887654 34433333334467777888888888876654
Q ss_pred c-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008925 374 I-----G----INPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKST 417 (548)
Q Consensus 374 ~-----~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 417 (548)
. . -+.|+.++..++......|+ +|.++++++.+. .|+...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~ 288 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAF 288 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChH
Confidence 2 0 03456666666666666676 677788877763 465553
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.25 E-value=2.3e-10 Score=98.66 Aligned_cols=128 Identities=16% Similarity=0.014 Sum_probs=88.3
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008925 316 LAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQ 395 (548)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (548)
++.+|.+.|++++|+..|+++++.. +.+...+..++.++...|++++|+..|+++++.. |.+..++..++.+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 7778888888888888888887753 2356677888888888888888888888888875 5667778888877765543
Q ss_pred --hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 396 --PWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 396 --~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
...+...++.... ..|....+...+.++...|++++|+..++++.+..|.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3344555554432 1222224445566777788888888888888776654
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.23 E-value=8e-10 Score=87.59 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (548)
.+..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555566666666666666666665542 2244555666666666666666666666666554 445556666666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008925 392 EAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
..|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 6666666666666666532 2234456666666666777777777766665443
No 94
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.23 E-value=1.1e-08 Score=92.56 Aligned_cols=221 Identities=9% Similarity=-0.055 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC--ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhC---CCh
Q 008925 221 MEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIK--DSDGVDKALTLMEEFGVKPDVVTFSTIMDAW----SSA---GLM 291 (548)
Q Consensus 221 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 291 (548)
.++|+.++++++..+ |.+..+|+.-...+...+ ++++++..++.+...+++ +..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 356777777776654 445566777777777666 777777777777776544 444555544444 444 678
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh--HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC------hHH
Q 008925 292 GKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQ--KAESILTSMRKYGVHPNVVMFTTVISGWCNAVK------MQR 363 (548)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 363 (548)
++++.+++.+++.+ +.+..+|+.-..++.+.|.++ ++++.++++.+.++ -|...|+.-...+...+. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 88888888888876 677888888888888888888 88888888887653 367778777777777776 889
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWR-AEELLQVMEEKG-V-RPKKSTIQLVADSWRAIGLAREAKRVLKS 440 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (548)
+++.+++++... +-|...|+.+...+.+.|+... +..+.+++.+.+ . ..+...+..+++++...|+.++|+++++.
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999999876 6788889888888888887555 445666655432 1 23556788888999999999999999999
Q ss_pred HHh-ccC
Q 008925 441 AEE-DRQ 446 (548)
Q Consensus 441 ~~~-~~~ 446 (548)
+.+ .+|
T Consensus 284 l~~~~Dp 290 (306)
T 3dra_A 284 LKSKYNP 290 (306)
T ss_dssp HHHTTCG
T ss_pred HHhccCh
Confidence 874 454
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.22 E-value=1.1e-10 Score=119.86 Aligned_cols=173 Identities=10% Similarity=-0.076 Sum_probs=142.5
Q ss_pred HcCCChhhHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008925 251 LDIKDSDGVDKALTLME--------EFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVR 322 (548)
Q Consensus 251 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (548)
...|++++|.+.++... +.. +.+...+..+..++...|++++|+..++++++.+ +.+...+..++.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77889999999999887 443 3356778888889999999999999999999875 6678899999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008925 323 AGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEEL 402 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 402 (548)
.|++++|+..|+++.+.. +.+...+..+..++...|++++ ++.|+++++.+ +.+...|..++.++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998864 2356788899999999999999 99999999876 66788899999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHHcCC
Q 008925 403 LQVMEEKGVRPKK-STIQLVADSWRAIGL 430 (548)
Q Consensus 403 ~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 430 (548)
|+++.+. .|+. ..+..++.++...|.
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9988763 5764 477778888766555
No 96
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.22 E-value=1.3e-08 Score=99.66 Aligned_cols=376 Identities=8% Similarity=-0.068 Sum_probs=226.3
Q ss_pred ccC-ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHH
Q 008925 6 GKG-KPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGN-VDEA 83 (548)
Q Consensus 6 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 83 (548)
+.| +.+.|..+|+.++.. -|. |+++.+..+|++.+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488888888888764 233 8999999999999874 5799999999988877764 4667
Q ss_pred HHHHHHHHhc-CC-CCCHHHHHHHHHHHhc----cCChHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhCCCHHHHH
Q 008925 84 MKIFQKMKDS-GC-KPTTSTYNTLIKGYGN----VGKPEESLKLLQLMSQDKNVKPN--DRTYNILVRAWCSKNSIEEAW 155 (548)
Q Consensus 84 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~ 155 (548)
..+|+.++.. |. +.+...|...+..+.. .++.+.+.++|++.... |+. ...|......- .......+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~~~~~lw~~Y~~fE-~~~~~~~~~ 143 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMGSLSELWKDFENFE-LELNKITGK 143 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCTTHHHHHHHHHHHH-HHHCHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhhhHHHHHHHHHHHH-HHhccccHH
Confidence 8889888764 43 3467888888887653 45788899999999863 222 12222222111 111111222
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--C-----CHHHHHHHH
Q 008925 156 NVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKE--G-----NMEDAMRFL 228 (548)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g-----~~~~A~~~~ 228 (548)
.++.+. .+.+..|..+++.+...-...+...|...+..-... | ..+.+..+|
T Consensus 144 ~~~~~~---------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y 202 (493)
T 2uy1_A 144 KIVGDT---------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH 202 (493)
T ss_dssp HHHHHH---------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHH---------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence 222111 112333333333332210001223444433332211 0 034566778
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC---
Q 008925 229 YRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG--- 305 (548)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 305 (548)
++++... +.+...|...+..+...|+.+.|..+++..... +. +...+.. |......++. ++.+.+.-
T Consensus 203 e~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~-~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~ 272 (493)
T 2uy1_A 203 NYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD-GMFLSLY----YGLVMDEEAV---YGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-SSHHHHH----HHHHTTCTHH---HHHHHHHTC--
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-cHHHHHH----HHhhcchhHH---HHHHHHHHHhh
Confidence 7777643 555777877777778888888888888888776 22 3222221 2221111221 22222110
Q ss_pred ------C---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHcC
Q 008925 306 ------I---EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN-AVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 306 ------~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~ 375 (548)
. .....+|...+..+.+.++.+.|..+|+.+ .. ...+...|...+..-.. .++.+.|..+|+.+++..
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 0 011245667777777788899999999999 32 12344444432222222 236999999999999863
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 376 INPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
+.++..+...+......|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.
T Consensus 351 -~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 351 -PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4456666777787888999999999999872 246688888888888899999999998876
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.22 E-value=2.3e-08 Score=97.82 Aligned_cols=358 Identities=8% Similarity=-0.051 Sum_probs=216.3
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHH----hcCCh
Q 008925 8 GKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKR-FKSILSLISKVEKD-GM-KPDSILFNAMINACS----ESGNV 80 (548)
Q Consensus 8 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~ 80 (548)
|+++.+..+|+.++.. .|+...|...+....+.++ .+....+|+.+... |. +.+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7899999999999984 4799999988888777663 46678888887764 43 346788988887764 34678
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008925 81 DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYK 160 (548)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (548)
+.+.++|++++......-...|......-.. .....+.+++.+.. +.+..|..+++.
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~~----------------------~~y~~ar~~y~~ 162 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDTL----------------------PIFQSSFQRYQQ 162 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHHH----------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHHh----------------------HHHHHHHHHHHH
Confidence 8999999999984211112233333222111 11222333322211 122223333333
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc--CC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 161 MVASGIQPDAVTYNTLARAYAQY--GE-----TYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKE 233 (548)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~--g~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 233 (548)
+...--..+...|...+..-... +- ...+..+|++++...+ .+...|...+..+.+.|+.+.|..++++++.
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22110001233444444332211 10 3446677777776533 3567777777777788888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcC------------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 008925 234 LEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFG------------VKPDVVTFSTIMDAWSSAGLMGKCQEIFDDM 301 (548)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (548)
. |.+...|...... .. .++. ++.+.+.- .......|...+....+.+..+.|..+|..+
T Consensus 242 ~--P~~~~l~~~y~~~-~e---~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 242 M--SDGMFLSLYYGLV-MD---EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp H--CCSSHHHHHHHHH-TT---CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C--CCcHHHHHHHHhh-cc---hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6 4443333322111 11 1111 22222110 0111245666677776778899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 008925 302 VKAGIEPDIHVFSILAKGYVRAG-EPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL 380 (548)
Q Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (548)
+.. +.+..+|...+..-...+ +++.|..+|+...+.- +.+...+...+......|+.+.|..+|+++. ...
T Consensus 313 -~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~ 384 (493)
T 2uy1_A 313 -GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTS 384 (493)
T ss_dssp -TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBH
T ss_pred -hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHH
Confidence 332 235555554443333334 6999999999998752 2234556667777788899999999999972 356
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
..|...+..-...|+.+.+..+++++.+
T Consensus 385 ~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 385 RMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788888877888999999998888863
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.20 E-value=1.1e-09 Score=98.38 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=29.7
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIGINP---NLKTYETLLWGYGEA----------KQPWRAEELLQVMEE 408 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 408 (548)
..++..|...|++++|+..|+++++.. |. ....+..++.+|... |++++|+..|+++++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAY-PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 344455555555555555555555432 11 123444555555443 555566666665554
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.19 E-value=1.8e-09 Score=85.44 Aligned_cols=130 Identities=13% Similarity=0.153 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWC 356 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 356 (548)
.+..+...+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++...+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566777778888888888888887764 5567777888888888888888888888887753 335667778888888
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 357 NAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
..|++++|.++++++.+.. +.+...+..++..+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888888764 556777888888888888888888888888764
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.19 E-value=1e-09 Score=94.56 Aligned_cols=189 Identities=10% Similarity=0.038 Sum_probs=115.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 208 CGIIVSGYCKEGNMEDAMRFLYRMKELEVHPN-LVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWS 286 (548)
Q Consensus 208 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 286 (548)
+...+..+...|++++|+..|++++... |+ ...|... ..... ..........+..++.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKN--------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTT--------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcch--------------hhhhHHHHHHHHHHHH
Confidence 3344555667777777777777776642 32 2222210 00000 0011223344777788
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC--hHHH
Q 008925 287 SAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK--MQRA 364 (548)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A 364 (548)
..|++++|+..|+++++.. |.+...+..++.++...|++++|+..|+++++.. +.+..++..++..|...|+ .+.+
T Consensus 66 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 8888888888888888775 5667788888888888888888888888887753 2346677777777755543 3445
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008925 365 MSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVAD 423 (548)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 423 (548)
...++++.. .+|....+..+..++...|++++|+..|+++++ +.|+......+..
T Consensus 144 ~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 144 ETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 555665542 122233444556667777888888888888876 3577665544443
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.18 E-value=6.3e-09 Score=89.80 Aligned_cols=175 Identities=13% Similarity=0.039 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHH
Q 008925 11 HEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESG----NVDEAMKI 86 (548)
Q Consensus 11 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 86 (548)
.+|+..|+.+.+.| ++.++..|...+...+++++|++.|++..+.| ++..+..|...|.. + ++++|++.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35777888887753 67778888888888888888888888887764 56677777777776 6 78888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhhhCCCCCCC---HHHHHHHHHHHHh----CCCHHHHH
Q 008925 87 FQKMKDSGCKPTTSTYNTLIKGYGN----VGKPEESLKLLQLMSQDKNVKPN---DRTYNILVRAWCS----KNSIEEAW 155 (548)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~a~ 155 (548)
|++..+.| ++.++..|...|.. .+++++|+..|++.... .++ ...+..|...|.. .+++++|+
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 88887754 66677777777776 67888888888887654 222 6677777777777 66778888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 008925 156 NVVYKMVASGIQPDAVTYNTLARAYAQY-G-----ETYRAEQMLFEMQNNQ 200 (548)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 200 (548)
.+|++..+. +.+...+..|..+|... | ++++|...|+...+.|
T Consensus 150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 888777765 23444566666666543 2 6777777777666554
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.17 E-value=2.7e-08 Score=89.91 Aligned_cols=217 Identities=9% Similarity=-0.042 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 008925 152 EEAWNVVYKMVASGIQPDAVTYNTLARAYAQYG--ETYRAEQMLFEMQNNQVRPNERTCGIIVSGY----CKE---GNME 222 (548)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~ 222 (548)
++|+..+++++..+ +.+...|+.-...+...| +++++++.++.++...++ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45666666655543 333445555555555555 566666666665554333 444444433333 333 4566
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh--hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC------hhHH
Q 008925 223 DAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSD--GVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGL------MGKC 294 (548)
Q Consensus 223 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a 294 (548)
+++.+++++.+.. +.+..+|+.-.-.+...+.++ ++.+.++.+.+..+. |...|+.....+...+. ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 6666666666543 455566665555555555555 566666666555433 45555555555555544 5566
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 008925 295 QEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQK-AESILTSMRKYG--VHPNVVMFTTVISGWCNAVKMQRAMSIYEKM 371 (548)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 371 (548)
++.+..++..+ +.|..+|+.+...+.+.|+... +..+..++.+.+ -..+...+..++..+.+.|+.++|+++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66666666554 4555666666666655555332 333444433321 0123445555555555555555566665555
Q ss_pred HH
Q 008925 372 CE 373 (548)
Q Consensus 372 ~~ 373 (548)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.16 E-value=3.4e-10 Score=116.05 Aligned_cols=153 Identities=14% Similarity=-0.023 Sum_probs=75.3
Q ss_pred ccCChhhHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008925 6 GKGKPHEAHYIFNCLI--------EEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSES 77 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (548)
..|++++|++.|++++ +.. +.+...+..++.++.+.|++++|++.|+++.+.. +.+...|..+..++...
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 3455555555555555 322 1233445555555555555555555555555432 33444555555555555
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 008925 78 GNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNV 157 (548)
Q Consensus 78 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 157 (548)
|++++|+..|+++.+.. +.+...+..+..++...|++++ +..|++..+.. +.+...+..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555442 2234445555555555555555 55555544431 23344455555555555555555555
Q ss_pred HHHHHHC
Q 008925 158 VYKMVAS 164 (548)
Q Consensus 158 ~~~~~~~ 164 (548)
|+++++.
T Consensus 557 ~~~al~l 563 (681)
T 2pzi_A 557 LDEVPPT 563 (681)
T ss_dssp HHTSCTT
T ss_pred HHhhccc
Confidence 5554443
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.15 E-value=5.6e-10 Score=93.37 Aligned_cols=161 Identities=10% Similarity=0.026 Sum_probs=121.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-Hh
Q 008925 278 FSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISG-WC 356 (548)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 356 (548)
+......+...|++++|...++++++.. |.+...+..+..++...|++++|+..++++.... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4456667788899999999998888765 5677888888899999999999999998887653 344333322212 12
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 008925 357 NAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-KKSTIQLVADSWRAIGLAREAK 435 (548)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 435 (548)
..+...+|+..++++++.. |.+...+..+..++...|++++|...|+++++....+ +...+..++.++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2233445788899998875 5578889999999999999999999999998754222 2457888899999999999999
Q ss_pred HHHHHHH
Q 008925 436 RVLKSAE 442 (548)
Q Consensus 436 ~~~~~~~ 442 (548)
..++++.
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.15 E-value=7e-09 Score=89.55 Aligned_cols=176 Identities=12% Similarity=0.020 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC----ChHHHHHHH
Q 008925 47 SILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVG----KPEESLKLL 122 (548)
Q Consensus 47 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 122 (548)
+|++.|++..+.| ++..+..|...|...+++++|+..|++..+.| ++..+..|...|.. + ++++|+..|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777654 66777788888888888888888888887764 56777777777777 6 788888888
Q ss_pred HHhhhCCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 008925 123 QLMSQDKNVKPNDRTYNILVRAWCS----KNSIEEAWNVVYKMVASGIQ-PDAVTYNTLARAYAQ----YGETYRAEQML 193 (548)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~ 193 (548)
++.... .+...+..|...|.. .+++++|+.+|++..+.+.. .....+..|...|.. .+++++|...|
T Consensus 77 ~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 887653 466777777777776 77888888888888776511 016677777777777 67788888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 008925 194 FEMQNNQVRPNERTCGIIVSGYCKE-G-----NMEDAMRFLYRMKELE 235 (548)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 235 (548)
++..+. ..+...+..+..+|... | ++++|..+|++..+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 877765 22445666666666543 2 7788888887777655
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=1.4e-09 Score=98.92 Aligned_cols=165 Identities=8% Similarity=-0.010 Sum_probs=137.6
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHH-HH
Q 008925 272 KPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMF-TT 350 (548)
Q Consensus 272 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~ 350 (548)
+.+...+..+...+...|++++|...|+++++.. |.+...+..++..+...|++++|...++++... .|+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3345667778888899999999999999999886 667889999999999999999999999998775 3555433 33
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH
Q 008925 351 VISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK---KSTIQLVADSWRA 427 (548)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~ 427 (548)
....+...++.++|+..++++++.. |.+...+..++.++...|++++|+..|+++++. .|+ ...+..++.++..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 3344667788889999999999876 778899999999999999999999999999975 344 4588899999999
Q ss_pred cCCHHHHHHHHHHHH
Q 008925 428 IGLAREAKRVLKSAE 442 (548)
Q Consensus 428 ~g~~~~A~~~~~~~~ 442 (548)
.|+.++|...+++..
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 999999999998864
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=1.9e-10 Score=93.24 Aligned_cols=141 Identities=9% Similarity=-0.029 Sum_probs=84.0
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 008925 284 AWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQR 363 (548)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 363 (548)
.+...|++++|+..++...... +.+...+..+...|.+.|++++|+..|+++++.. +-+..+|..++.+|...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3444556666666666665432 2223345566666777777777777777766643 2245566667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEEL-LQVMEEKGVRPK-KSTIQLVADSWRAIG 429 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~-~~~~~~l~~~~~~~g 429 (548)
|+..|+++++.. |.+...+..++..|.+.|++++|.+. ++++++. .|+ ..++.....++...|
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 777777777654 44566667777777777776655543 4666553 343 335555555555555
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.12 E-value=2.5e-09 Score=107.75 Aligned_cols=154 Identities=10% Similarity=-0.034 Sum_probs=112.8
Q ss_pred CCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 008925 253 IKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESI 332 (548)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (548)
.|++++|...+++..+..+ .+...+..+...+...|++++|...++++++.. +.+...+..++.+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4678888888888877643 357788888888889999999999999988875 56678888888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHC
Q 008925 333 LTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA---KQPWRAEELLQVMEEK 409 (548)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 409 (548)
++++.+.. +.+...+..+..++...|++++|.+.|+++.+.. +.+...+..++.++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99888753 2356788888888999999999999999988875 55678888888888888 8999999999988875
Q ss_pred C
Q 008925 410 G 410 (548)
Q Consensus 410 ~ 410 (548)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.11 E-value=5.1e-10 Score=90.68 Aligned_cols=141 Identities=7% Similarity=-0.038 Sum_probs=92.1
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
+...|++++|+..++.+....+ .+...+..++..|.+.|++++|++.|+++++.. |.+..+|..+..+|...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 4556777777777777665422 133456667777777777777777777777663 44667777777777777777777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHH-HHHhhhCCCCCCCHHHHHHHHHHHHhCC
Q 008925 84 MKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKL-LQLMSQDKNVKPNDRTYNILVRAWCSKN 149 (548)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (548)
+..|++.++.. +-+..++..+..+|.+.|+.++|.+. +++..+.. |.+...|......+...|
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 77777777653 33566777777777777777655543 45555531 344555665555555554
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.10 E-value=1.2e-08 Score=88.98 Aligned_cols=190 Identities=11% Similarity=0.020 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH---HHH
Q 008925 239 NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPD--VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDI---HVF 313 (548)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 313 (548)
+...+..++..+...|++++|...|+.+.+..+... ...+..++.++...|++++|+..|+++++.. |.+. .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 344566667777778888888888888776543211 3456667777888888888888888877663 2222 244
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHH------------
Q 008925 314 SILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLK------------ 381 (548)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------ 381 (548)
..++.++...+.. .+ ..|..+...+...|++++|+..|+++++.. |.+..
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHH
Confidence 5555555442100 00 001111112223444555555555554431 11111
Q ss_pred -----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 382 -----TYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK----STIQLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 382 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
....++..|...|++++|+..|+++++. .|+. ..+..++.++.+.|++++|++.++.+....|...
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 1135677888999999999999999874 3442 4688899999999999999999999886665543
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.08 E-value=1.7e-09 Score=90.39 Aligned_cols=158 Identities=14% Similarity=0.065 Sum_probs=75.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhCC
Q 008925 211 IVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDA-WSSAG 289 (548)
Q Consensus 211 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 289 (548)
....+...|++++|+..|+++.+.. |.+...+..+...+...|++++|...++.+.+..+ ++......... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhc
Confidence 3444445555555555555544322 23344455555555555555555555554443322 22222111111 11111
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHH
Q 008925 290 LMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRAMSIY 368 (548)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 368 (548)
....|...++++++.. |.+...+..+..++...|++++|...|+++.+....+ +...+..++..+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223455555555543 3445555666666666666666666666665543211 1335555555566666666666666
Q ss_pred HHHH
Q 008925 369 EKMC 372 (548)
Q Consensus 369 ~~~~ 372 (548)
++.+
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.06 E-value=4.3e-09 Score=106.01 Aligned_cols=154 Identities=10% Similarity=-0.022 Sum_probs=119.0
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008925 7 KGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKI 86 (548)
Q Consensus 7 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 86 (548)
.|++++|+..|+++++..+. +...+..++..+...|++++|++.|++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 57899999999999887543 67889999999999999999999999999874 55688999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHH
Q 008925 87 FQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSK---NSIEEAWNVVYKMVA 163 (548)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 163 (548)
|++..+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+..++... |+.++|.+.+++.++
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99998874 4467889999999999999999999999988753 45678888999999999 999999999999988
Q ss_pred CC
Q 008925 164 SG 165 (548)
Q Consensus 164 ~~ 165 (548)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 75
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.06 E-value=5e-09 Score=96.40 Aligned_cols=158 Identities=11% Similarity=-0.022 Sum_probs=68.3
Q ss_pred HHHcCCChhhHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC--C-CCC--HHHHHHHHH
Q 008925 249 GFLDIKDSDGVDKALTLMEEFGV---KP--DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAG--I-EPD--IHVFSILAK 318 (548)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~~ 318 (548)
.|...|++++|...+.+..+... .+ ...++..+..+|...|++++|+..|++.++.. . .+. ..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555666666665555433210 00 02344455555555555555555555554320 0 111 123444444
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHH
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHP-N----VVMFTTVISGWCNAVKMQRAMSIYEKMCEI----GINPN-LKTYETLLW 388 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~ 388 (548)
+|.. |++++|+..|++..+..... + ..++..+...|...|++++|+..|+++++. +..+. ..++..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 4444 55555555555444310000 0 223444455555555555555555554432 10000 113333444
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 008925 389 GYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~ 407 (548)
++...|++++|...|++..
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 4444455555555555444
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.05 E-value=2.4e-08 Score=87.09 Aligned_cols=186 Identities=8% Similarity=0.001 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-H---HH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMK-PD-SILFNAMINACSESGNVDEAMKIFQKMKDSGCKPT-T---ST 101 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~ 101 (548)
+...+..++..+.+.|++++|+..|+++.+.... |. ...+..+..+|.+.|++++|+..|+++.+.. |+ . .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 3445566667777778888888888777765211 11 3466667777777788888888887777652 22 1 23
Q ss_pred HHHHHHHHhc------------------cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008925 102 YNTLIKGYGN------------------VGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVA 163 (548)
Q Consensus 102 ~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 163 (548)
+..+..++.. .|++++|+..|+++.+.. |.+...+....... .+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~-- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHH--
Confidence 4444444433 456777777777776642 22222222111100 000000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008925 164 SGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPN--ERTCGIIVSGYCKEGNMEDAMRFLYRMKELE 235 (548)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 235 (548)
......++..|...|++++|...|+.+++..+... ...+..++.++.+.|++++|.+.++.+...+
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01123466788888999999999998887643311 2467778888899999999999998887754
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.03 E-value=1e-08 Score=93.11 Aligned_cols=86 Identities=12% Similarity=-0.002 Sum_probs=42.1
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHH
Q 008925 286 SSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHP-NVVMFTTVISGWCNAVKMQRA 364 (548)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 364 (548)
...++.+.|...+++++... |.+...+..+...+...|++++|+..|+++.+..... +...+..++..+...|+.++|
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 33444444555555555443 3444555555555555555555555555555432110 133455555555555555555
Q ss_pred HHHHHHHH
Q 008925 365 MSIYEKMC 372 (548)
Q Consensus 365 ~~~~~~~~ 372 (548)
...|++.+
T Consensus 275 ~~~~r~al 282 (287)
T 3qou_A 275 ASXYRRQL 282 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.00 E-value=3.3e-08 Score=85.46 Aligned_cols=131 Identities=9% Similarity=-0.086 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
+..++..+...|++++|+..|+++. .|+...+..++..+...|++++|+..|+++++.. +.+...+..++.+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3445556666666777766666553 3456666666666666777777777777766654 4456666666677777
Q ss_pred cCChHHHHHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 393 AKQPWRAEELLQVMEEKGV--------------RPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~--------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.|++++|+..|+++.+... .|+ ...+..++.++...|++++|...++++.+..|..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 7777777777776665321 111 1466667777777777777777777777665543
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.00 E-value=2.1e-08 Score=92.17 Aligned_cols=200 Identities=11% Similarity=0.037 Sum_probs=109.6
Q ss_pred ccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008925 6 GKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTR-QKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAM 84 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 84 (548)
..|++++|.++++++.+.... . +.+ .++++.|...|+++ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 468899999999988764221 1 111 35555555555543 23455556666666
Q ss_pred HHHHHHHhcCC---CC--CHHHHHHHHHHHhccCChHHHHHHHHHhhhC---CCCCC-CHHHHHHHHHHHHhCCCHHHHH
Q 008925 85 KIFQKMKDSGC---KP--TTSTYNTLIKGYGNVGKPEESLKLLQLMSQD---KNVKP-NDRTYNILVRAWCSKNSIEEAW 155 (548)
Q Consensus 85 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~a~ 155 (548)
..|.+...... .+ -..+|..+..+|...|++++|+..|++.... .+.+. ...++..+..+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 66665543210 00 1235555666666666666666666554332 01000 12455566666655 6666666
Q ss_pred HHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 008925 156 NVVYKMVASGIQP-----DAVTYNTLARAYAQYGETYRAEQMLFEMQNN----QVRPN-ERTCGIIVSGYCKEGNMEDAM 225 (548)
Q Consensus 156 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~ 225 (548)
..|++.++..... ...++..+...+...|++++|+..|++.... +..+. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666655431000 1345666667777777777777777665542 11111 224555556666667777777
Q ss_pred HHHHHHH
Q 008925 226 RFLYRMK 232 (548)
Q Consensus 226 ~~~~~~~ 232 (548)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777766
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.99 E-value=2.9e-07 Score=83.87 Aligned_cols=164 Identities=7% Similarity=-0.079 Sum_probs=124.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CC----HHHH
Q 008925 280 TIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIH------VFSILAKGYVRAGEPQKAESILTSMRKYGVH-PN----VVMF 348 (548)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~ 348 (548)
..+..+...|++++|..+++...+.. +.+.. .+..++..+...+++++|+..++++.+.... ++ ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34667888999999999999988753 22222 3345677777888999999999999874222 22 2368
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHH
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEI-----GINPN-LKTYETLLWGYGEAKQPWRAEELLQVMEE----KGVRPK-KST 417 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~ 417 (548)
+.++..|...|++++|+.+|+++++. +..+. ..++..++..|...|++++|+.++++.++ .+..+. ...
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999999842 11122 24688999999999999999999998874 222333 458
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhc
Q 008925 418 IQLVADSWRAIG-LAREAKRVLKSAEED 444 (548)
Q Consensus 418 ~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 444 (548)
+..++.++...| .+++|++.++++.+.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 889999999999 579999999997643
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.96 E-value=3.5e-07 Score=83.49 Aligned_cols=219 Identities=11% Similarity=0.020 Sum_probs=136.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-C-ChhHHH
Q 008925 219 GNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIK-DSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSA-G-LMGKCQ 295 (548)
Q Consensus 219 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~ 295 (548)
+..++|++++++++..+ +.+..+|+.-...+...+ .+++++..++.+....++ +..+|+.-..++... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 33455666666666543 344555666555555555 366666666666665533 555566555555554 5 666777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-------
Q 008925 296 EIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQ--------KAESILTSMRKYGVHPNVVMFTTVISGWCNAVK------- 360 (548)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------- 360 (548)
.++..+++.+ +.+..+|+.-..++.+.|.++ ++++.++++.+.+ +-|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 7777777665 556666666555555555555 7777777777754 2366677777777766665
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHHCC----C-CCCH
Q 008925 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQP--------------------WRAEELLQVMEEKG----V-RPKK 415 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~----~-~p~~ 415 (548)
++++++++++++... +-|...|..+-..+.+.|+. .+...+..++...+ . .++.
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 678888888888765 66777777777777666654 12222222222211 0 2455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 416 STIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
..+..++++|...|+.++|.++++.+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 677888899988899999999998875
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.95 E-value=6.6e-09 Score=83.64 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=52.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWR 426 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (548)
.+..++..+.+.|++++|+..|+++++.. |.+...|..++.+|...|++++|+..|+++.+.. +.+...+..++.++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 44555555555555555555555555543 4445555555555555555555555555555432 112335555555555
Q ss_pred HcCCHHHHHHHHHHHHhcc
Q 008925 427 AIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~ 445 (548)
..|++++|+..++++.+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 5555555555555555443
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.93 E-value=4.4e-08 Score=76.32 Aligned_cols=95 Identities=12% Similarity=0.087 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (548)
.+...+..|.+.|++++|+..|+++++.. +.+...|..++.++...|++++|+..|+++++.+ +.+...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 44455555555555555555555555432 2234455555555555555555555555555543 444555555555565
Q ss_pred hcCChHHHHHHHHHHHH
Q 008925 392 EAKQPWRAEELLQVMEE 408 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~ 408 (548)
..|++++|++.|++.++
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666666666655555
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.93 E-value=4.1e-08 Score=76.55 Aligned_cols=98 Identities=12% Similarity=-0.062 Sum_probs=49.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWR 426 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (548)
.+...+..|.+.|++++|++.|+++++.. |.+...|..++.+|...|++++|+..+++.++.+ +.+...+..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34444555555555555555555555443 3444555555555555555555555555555431 122334555555555
Q ss_pred HcCCHHHHHHHHHHHHhccC
Q 008925 427 AIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~~ 446 (548)
..|++++|++.++++.+.+|
T Consensus 93 ~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHHHHCc
Confidence 55555555555555554444
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.92 E-value=1e-06 Score=80.45 Aligned_cols=172 Identities=5% Similarity=-0.089 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 008925 149 NSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYG-ETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKE-G-NMEDAM 225 (548)
Q Consensus 149 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~ 225 (548)
+..++|++++++++..+ +-+..+|+.-...+...| .+++++++++.++...++ +..+|+.-..++... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 33455666666666553 334555555555555555 366666666666665444 555555555555544 4 566666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh--------hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-------
Q 008925 226 RFLYRMKELEVHPNLVVFNSLIKGFLDIKDSD--------GVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGL------- 290 (548)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 290 (548)
.+++++++.. +.+..+|+.-.-.+...+.++ ++.+.++.+.+..+. |...|+.....+.+.+.
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHH
Confidence 6666666543 445566655544444444444 556666666655433 55566666555555554
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008925 291 MGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGE 325 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (548)
++++++.+.+++... +.|...|+.+-..+.+.|+
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 466666666666654 5566666666655555554
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=2.5e-07 Score=84.34 Aligned_cols=127 Identities=9% Similarity=0.027 Sum_probs=62.1
Q ss_pred HHHHhccCChHHHHHHHHHhhhCCCCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 008925 106 IKGYGNVGKPEESLKLLQLMSQDKNVKPNDR----TYNILVRAWCSKNSIEEAWNVVYKMVASGIQ-PD----AVTYNTL 176 (548)
Q Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 176 (548)
+..+...|++++|..++++........|+.. .+..+...+...+++++|+..++++++.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4455566666666666666654322222211 2223444455555666666666666553211 11 2245555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 177 ARAYAQYGETYRAEQMLFEMQNN-----QVRP-NERTCGIIVSGYCKEGNMEDAMRFLYRMK 232 (548)
Q Consensus 177 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 232 (548)
+.+|...|++++|...++++.+. +..+ ...++..++.+|.+.|++++|+..+++.+
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66666666666666666555421 0000 12244455555555555555555555543
No 125
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.88 E-value=1.1e-06 Score=79.84 Aligned_cols=184 Identities=10% Similarity=0.021 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HhHHHHHH
Q 008925 257 DGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAG--LMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGE-PQKAESIL 333 (548)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~ 333 (548)
+++...+..+....++ +..+|+.-..++...+ .+++++.++..+++.. +.+..+|+.-..++...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4455555555554432 4555555555555555 2556666666666554 4555566555555555555 35666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcc--------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------
Q 008925 334 TSMRKYGVHPNVVMFTTVISGWCNA--------------VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA------ 393 (548)
Q Consensus 334 ~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 393 (548)
+.+.+.+ +-|...|+.....+... +.++++++++++++... |-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 6666543 22444555444443332 44677777777777765 55666676555555544
Q ss_pred -----CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH---HHHcCCHHHHHHHHHHHHhccC
Q 008925 394 -----KQPWRAEELLQVMEEKGVRPKKS-TIQLVADS---WRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 394 -----g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
+.++++++.++++.+. .|+.. .+..++.. ....|..++....+.++.+.+|
T Consensus 247 ~~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 3467788888888764 46543 22222211 1234667777777777766654
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.88 E-value=5.5e-09 Score=84.10 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLW 388 (548)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (548)
+...+..+...+.+.|++++|+..|+++.... +.+...|..++.+|...|++++|+..|+++++.. |.++..|..++.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 45577788888888889999999888888764 3356788888888888899999999999888875 566788888888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 008925 389 GYGEAKQPWRAEELLQVMEEKGVRPKKS 416 (548)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 416 (548)
+|...|++++|+..|++.++. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 888999999999999888874 46654
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.88 E-value=2.7e-07 Score=84.09 Aligned_cols=168 Identities=7% Similarity=-0.044 Sum_probs=115.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC---CCC--H
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDI------HVFSILAKGYVRAGEPQKAESILTSMRKYGV---HPN--V 345 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~ 345 (548)
.+...+..+...|++++|...+...++.. +... ..+..++..+...|++++|+..++++.+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455666777888888888887777653 2222 2234455667777888888888888775321 111 3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEI--GINPN----LKTYETLLWGYGEAKQPWRAEELLQVMEEK----GVRPK- 414 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~- 414 (548)
.+++.++..|...|++++|+.+|+++++. ..+.+ ..++..++.+|...|++++|+.++++.++. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47788888888888888888888888732 11222 157788888888899999999888887642 11111
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcc
Q 008925 415 KSTIQLVADSWRAIGLAREA-KRVLKSAEEDR 445 (548)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 445 (548)
..++..++.++...|++++| ...++++.+..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 45778888888899999988 77788876443
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.88 E-value=1.1e-08 Score=82.57 Aligned_cols=102 Identities=12% Similarity=-0.036 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008925 345 VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADS 424 (548)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 424 (548)
...+..++..+...|++++|+..|++++... +.+...|..++.+|...|++++|+..|+++++.. +.+...+..++.+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3355566666667777777777777776654 5566666677777777777777777777766542 2234466666777
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCC
Q 008925 425 WRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 425 ~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
+...|++++|+..++++.+..|..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCC
Confidence 777777777777777766555543
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.88 E-value=1.3e-07 Score=81.51 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=100.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 008925 278 FSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN 357 (548)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 357 (548)
+..+...+...|++++|...|++++ .|+..++..++.+|...|++++|+..++++.+.. +.+...+..++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4456667778888888888887764 5577788888888888888888888888887753 3356677888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008925 358 AVKMQRAMSIYEKMCEIGINPNL----------------KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK 415 (548)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 415 (548)
.|++++|+..|+++.+.. +.+. ..+..++.+|...|++++|...|+++.+. .|+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 888888888888888753 2222 67888999999999999999999999874 4543
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.87 E-value=1.2e-07 Score=77.94 Aligned_cols=129 Identities=9% Similarity=-0.016 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 311 HVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
..+..++..+...|++++|...|+++.+.. +.+...+..++..+...|++++|+..++++++.. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456677778888888888888888887753 3356778888888888888899998888888875 56778888888889
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 008925 391 GEAKQPWRAEELLQVMEEKGVRPKKSTIQL--VADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
...|++++|...++++.+.. +.+...+.. .+..+...|++++|+..+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999998888753 223344433 3444777889999999988754
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.86 E-value=1.3e-07 Score=77.72 Aligned_cols=129 Identities=10% Similarity=-0.006 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGW 355 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 355 (548)
..+..+...+...|++++|...++++++.. +.+..++..++.++...|++++|...+++..+.. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777888888888888888888765 5567788888888888889999988888888753 33566788888888
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHH
Q 008925 356 CNAVKMQRAMSIYEKMCEIGINPNLKTYETL--LWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~ 407 (548)
...|++++|...|+++.+.. +.+...+..+ +..+...|++++|+..+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88899999999999888864 4455555433 344777788888888887654
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.86 E-value=7.4e-08 Score=80.40 Aligned_cols=123 Identities=9% Similarity=0.039 Sum_probs=94.2
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh-
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINA-CSESGNV- 80 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 80 (548)
.+...|++++|+..|+.+++..+ .+...|..++..+...|++++|+..|+++.+.. +.+...+..+..+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 45678888899999988888754 367788888888888999999999998887764 4467777778877 7788888
Q ss_pred -HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhC
Q 008925 81 -DEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD 128 (548)
Q Consensus 81 -~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 128 (548)
++|...|+++.+.. +.+...+..+..++...|++++|+..|+++...
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888888763 345677888888888888888888888888775
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.82 E-value=6e-07 Score=81.79 Aligned_cols=167 Identities=8% Similarity=-0.055 Sum_probs=118.3
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCC--HH
Q 008925 242 VFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPD-----VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI---EPD--IH 311 (548)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 311 (548)
.+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|...+.++.+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444455666677777777777766665432211 12233455667788899999999988875321 122 45
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHHcC----CCC-CH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKY-GVHPN-----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIG----INP-NL 380 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~ 380 (548)
+++.++..|...|++++|...++++.+. ...|+ ..++..++..|...|++++|+.+++++++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999988731 00122 2578889999999999999999999988642 111 15
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 008925 381 KTYETLLWGYGEAKQPWRA-EELLQVMEE 408 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 408 (548)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777887753
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.82 E-value=1.5e-07 Score=83.05 Aligned_cols=133 Identities=11% Similarity=-0.042 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN--LKTYETLLWG 389 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 389 (548)
....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 44556677888888888888888877643 444455566667788888888888888665421 111 2367778888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 390 YGEAKQPWRAEELLQVMEEKGVRPK--KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
+...|++++|+..|++.......|. .......+.++.+.|+.++|...|+++.+.+|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 8888888889888888875433254 336677788888889999999999888877654
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.81 E-value=2.3e-07 Score=71.91 Aligned_cols=114 Identities=15% Similarity=0.133 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 311 HVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
..+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|..+|+++.+.. +.+..++..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 345555555555566666666555555432 2234455555555556666666666666655543 34455555666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008925 391 GEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRA 427 (548)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 427 (548)
...|++++|...++++.+.. +.+...+..++.++..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 66666666666666655432 1223344444444443
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.81 E-value=5.8e-08 Score=81.07 Aligned_cols=120 Identities=11% Similarity=0.096 Sum_probs=67.2
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCCh--HH
Q 008925 287 SAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISG-WCNAVKM--QR 363 (548)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 363 (548)
..|++++|...++..++.. +.+...+..++.+|...|++++|...|+++.+.. +.+...+..++.+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455566666666655553 4455566666666666666666666666665532 1234455555555 5555665 66
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (548)
|+..|+++++.. +.+...+..++..|...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666553 344555666666666666666666666666553
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.81 E-value=5.2e-08 Score=83.37 Aligned_cols=158 Identities=10% Similarity=-0.005 Sum_probs=96.6
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcC
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKD----GMK-PDSILFNAMINACSESG 78 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g 78 (548)
+...|++++|.+.++.+.. .+.....++..++..+...|++++|+..+++.... +.+ ....++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4567888888886655543 23335577888888888888888888888887652 111 22446777778888888
Q ss_pred ChHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhC
Q 008925 79 NVDEAMKIFQKMKDS----GCKP--TTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPN----DRTYNILVRAWCSK 148 (548)
Q Consensus 79 ~~~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 148 (548)
++++|...+++..+. +-.+ ...++..+...+...|++++|+..+++.........+ ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 888888888877653 1011 1244666777777777877777777766431100111 12345555566666
Q ss_pred CCHHHHHHHHHHHH
Q 008925 149 NSIEEAWNVVYKMV 162 (548)
Q Consensus 149 g~~~~a~~~~~~~~ 162 (548)
|++++|...+++..
T Consensus 161 g~~~~A~~~~~~al 174 (203)
T 3gw4_A 161 KNLLEAQQHWLRAR 174 (203)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 66666666665544
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.81 E-value=5.3e-08 Score=83.33 Aligned_cols=159 Identities=9% Similarity=-0.099 Sum_probs=105.0
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHhccCC
Q 008925 286 SSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRK----YGVHP-NVVMFTTVISGWCNAVK 360 (548)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~ 360 (548)
...|++++|..+++.+... ......++..+...+...|++++|...+++..+ .+..| ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3467777777755444332 123455777777788888888888888877765 11112 23466777888888888
Q ss_pred hHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHHcC
Q 008925 361 MQRAMSIYEKMCEI--GINPN----LKTYETLLWGYGEAKQPWRAEELLQVMEEKG---VRPK--KSTIQLVADSWRAIG 429 (548)
Q Consensus 361 ~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~g 429 (548)
+++|...++++.+. ..+.+ ...+..+...+...|++++|...+++..+.. -.+. ..++..++.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888887753 11212 3457778888888899999988888876321 0111 224567888889999
Q ss_pred CHHHHHHHHHHHHhcc
Q 008925 430 LAREAKRVLKSAEEDR 445 (548)
Q Consensus 430 ~~~~A~~~~~~~~~~~ 445 (548)
++++|.+.++++.+..
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998877544
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.80 E-value=3.1e-07 Score=71.13 Aligned_cols=115 Identities=12% Similarity=0.181 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISG 354 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 354 (548)
...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|..+++++.+.. +.+..++..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4556666677777777777777777777654 4556667777777777777777777777776643 2345566677777
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 355 WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
+...|++++|...|+++.+.. +.+...+..+..++..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 777777777777777777654 4455555555555543
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=3.4e-08 Score=79.56 Aligned_cols=110 Identities=14% Similarity=0.012 Sum_probs=80.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 008925 16 IFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGC 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 95 (548)
.|+.+++..+ .+...+..++..+...|++++|+..|+++.... +.+...|..+..+|...|++++|+..|+++....
T Consensus 9 ~~~~al~~~p-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEISS-DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCCH-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 4555554332 244567777788888888888888888887763 4567777788888888888888888888887763
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhhC
Q 008925 96 KPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD 128 (548)
Q Consensus 96 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 128 (548)
+.+...+..+..+|...|++++|+..|++....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345677777888888888888888888777654
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.79 E-value=1.9e-07 Score=73.46 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008925 308 PDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLL 387 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 387 (548)
.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|+..++++.+.. +.+...+..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345566777777777777777777777777653 2355667777777777777777777777777764 45667777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 008925 388 WGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIG 429 (548)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 429 (548)
.++...|++++|...+++..+. .|+ ...+..++.++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 7777777777777777777654 233 345555666665544
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=6.9e-08 Score=87.33 Aligned_cols=194 Identities=8% Similarity=-0.044 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 239 NLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAK 318 (548)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (548)
+...+..+...+...|++++|...++...+..+ .+...+..+..++...|++++|...++++++.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 445666677777777777777777777776542 266777788888888888888888888888775 566778888888
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPNV-VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPW 397 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 397 (548)
+|...|++++|...|+++.+.+ |+. ..+...+....+ ..++.. +........+++......+...+ .|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHHH--HHHHH
Confidence 8888888888888888877632 211 011111111111 111111 22233333455555544443332 68888
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 008925 398 RAEELLQVMEEKGVRPKKS-TIQLVADSWRAI-GLAREAKRVLKSAEED 444 (548)
Q Consensus 398 ~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 444 (548)
+|++.++++.+. .|+.. ....+...+... +.+++|.++|+++.+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999888887764 56654 444455555554 6788999999987643
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=6.3e-08 Score=87.58 Aligned_cols=98 Identities=11% Similarity=-0.015 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 134 NDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVS 213 (548)
Q Consensus 134 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 213 (548)
+...+..++..+...|++++|+..|++.++.. +.+...|..+..++...|++++|...+++..+..+. +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34445555556666666666666666665542 234555666666666666666666666666554332 4555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 008925 214 GYCKEGNMEDAMRFLYRMKE 233 (548)
Q Consensus 214 ~~~~~g~~~~A~~~~~~~~~ 233 (548)
++...|++++|+..|+++.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.78 E-value=2.9e-07 Score=72.03 Aligned_cols=116 Identities=9% Similarity=0.006 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (548)
.+..++..+...|++++|...++++.... +.+...+..++..+...|++++|+..++++.+.. +.+...+..++.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 34444444445555555555555444431 1233444444555555555555555555555442 333444555555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008925 392 EAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGL 430 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 430 (548)
..|++++|...+++..+.. +.+...+..++.++...|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555555555554431 1123344444444444443
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.77 E-value=1.4e-07 Score=83.21 Aligned_cols=130 Identities=10% Similarity=-0.003 Sum_probs=68.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 008925 101 TYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPD--AVTYNTLAR 178 (548)
Q Consensus 101 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 178 (548)
....+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHH
Confidence 3444455555566666666666555432 2322244444445556666666666665443321 110 224555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 179 AYAQYGETYRAEQMLFEMQNNQVRPN--ERTCGIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666666666666653322132 234445555666666666666666666654
No 146
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.76 E-value=8.4e-06 Score=74.09 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHHH
Q 008925 360 KMQRAMSIYEKMCEIGINPNLKTYETLLW---GYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~ 408 (548)
.++++++.++++++.. |.+.-++..++. +....|..+++..++.++++
T Consensus 253 ~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 253 VLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3566666666666643 223222222221 12234556667777777765
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=2.8e-07 Score=85.66 Aligned_cols=131 Identities=11% Similarity=-0.006 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 008925 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN--------------VVMFTTVISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
+...+..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|+..|+++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344566666677777777777777777666421111 467888888888899999999999998887
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 008925 375 GINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-KKSTIQLVADSWRAIGLAREA-KRVLKSAE 442 (548)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 442 (548)
. +.+...+..++.+|...|++++|+..|+++++. .| +...+..++.++...|+.++| ...++++.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 667888888889999999999999999988875 34 455788888888888888888 44556554
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.75 E-value=2.2e-07 Score=73.11 Aligned_cols=118 Identities=12% Similarity=0.059 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 274 DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVIS 353 (548)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 353 (548)
+...+..+...+...|++++|...++++++.. +.+..++..++.++...|++++|+..++++.+.. +.+...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 35566667777777777777777777777654 4466677777777777777777777777776643 234566777777
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008925 354 GWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK 394 (548)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (548)
++...|++++|++.|+++.+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 7777777777777777777653 334455666666655544
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.75 E-value=2.8e-07 Score=72.11 Aligned_cols=120 Identities=11% Similarity=0.037 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008925 274 DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVIS 353 (548)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 353 (548)
+...+..+...+...|+++.|...++++.... +.+...+..++..+...|++++|...++++.+.. +.+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 35567777888888889999999888888765 5577788888888888899999998888888753 334667888888
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 008925 354 GWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQP 396 (548)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (548)
.+...|++++|...|+++.+.. +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 8888899999999998888875 55677777888887777764
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.71 E-value=1.9e-07 Score=74.58 Aligned_cols=98 Identities=12% Similarity=-0.039 Sum_probs=57.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWR 426 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (548)
.+..+...+...|++++|+..|++++... |.+...|..++.+|...|++++|+..|+++++.. +.+...+..++.++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 44455555666666666666666666554 4455566666666666666666666666666532 223345555666666
Q ss_pred HcCCHHHHHHHHHHHHhccC
Q 008925 427 AIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~~ 446 (548)
..|++++|++.++++.+..|
T Consensus 98 ~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 66666666666666655444
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.70 E-value=1.3e-07 Score=73.74 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC----HHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG--VRPK----KSTIQ 419 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~ 419 (548)
..+..++..+.+.|++++|+..|+++++.. |.+...|..++.+|...|++++|+..+++.++.. ..++ ..++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 356677888888888888888888888765 5667778888888888888888888888877531 1111 23667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008925 420 LVADSWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 420 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
.++.++...|++++|++.++++.+..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 788888889999999999988875443
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.69 E-value=3.7e-07 Score=84.85 Aligned_cols=130 Identities=10% Similarity=-0.025 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPD---------------IHVFSILAKGYVRAGEPQKAESILTSMRKY 339 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (548)
...+..+...+...|++++|...|+++++.. +.+ ..+|..+..+|.+.|++++|+..++++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566777777888888888888888888764 333 578889999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 008925 340 GVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRA-EELLQVME 407 (548)
Q Consensus 340 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 407 (548)
. +.+...+..+..+|...|++++|+..|+++++.. +.+...+..+..++...|++++| ...++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3367788999999999999999999999999875 66788889999999999999888 45666664
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=3.7e-07 Score=71.14 Aligned_cols=97 Identities=12% Similarity=-0.038 Sum_probs=50.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWR 426 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 426 (548)
.+..++..+...|++++|+..|+++++.. +.+...|..++.++...|++++|+..+++.++.. +.+...+..++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444555555555555555555555543 3445555555555555555555555555555432 112335555555555
Q ss_pred HcCCHHHHHHHHHHHHhcc
Q 008925 427 AIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~ 445 (548)
..|++++|+..++++.+.+
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 5555555555555554433
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=5.5e-07 Score=70.12 Aligned_cols=96 Identities=15% Similarity=0.065 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 311 HVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
..+..++..+.+.|++++|+..|++..+.. +.+...|..++.++...|++++|+..|+++++.. +.+...+..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 455666667777777777777777776643 2345667777777777777777777777777764 55566777777777
Q ss_pred HhcCChHHHHHHHHHHHH
Q 008925 391 GEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~ 408 (548)
...|++++|+..|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 777777777777777765
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.67 E-value=6e-07 Score=73.74 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 310 IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
...+..+...+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455566666666666666666666666542 2244556666666666666666666666666654 4445566666666
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 008925 390 YGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~ 408 (548)
|...|++++|+..|++.++
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 6666666666666666654
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.67 E-value=6.9e-07 Score=70.70 Aligned_cols=100 Identities=13% Similarity=-0.038 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008925 344 NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVAD 423 (548)
Q Consensus 344 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 423 (548)
+...+..++..+...|++++|+..|+++++.. +.+...+..++.++...|++++|+..+++.++.. +.+...+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34455555555555555666665555555543 3445555555555666666666666666555432 123345555566
Q ss_pred HHHHcCCHHHHHHHHHHHHhcc
Q 008925 424 SWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 424 ~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
++...|++++|+..++++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 6666666666666666555443
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.67 E-value=4.3e-07 Score=70.83 Aligned_cols=95 Identities=12% Similarity=0.109 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG--INPN----LKTYETL 386 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~l 386 (548)
+..++..+.+.|++++|+..|+++++.. +.+...|..++.+|...|++++|++.++++++.. ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444444444444444444444432 1123344444444444444444444444444321 0111 1234444
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 008925 387 LWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
+.++...|++++|++.|++.++
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555544
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=1.2e-07 Score=75.89 Aligned_cols=99 Identities=11% Similarity=-0.046 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLW 388 (548)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (548)
+...+..+...+...|++++|+..|+++...+ +.+...|..+..++...|++++|+..|+++++.. |.+...+..++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34455666777777888888888888777653 2356677777777888888888888888887765 556677777888
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 008925 389 GYGEAKQPWRAEELLQVMEEK 409 (548)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~ 409 (548)
+|...|++++|...|++.++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877653
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.65 E-value=5.3e-08 Score=83.05 Aligned_cols=87 Identities=14% Similarity=-0.008 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-KKSTIQLVADS 424 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 424 (548)
..+..+..++...|++++|+..++++++.. +.+...+..++.+|...|++++|+..|++..+. .| +...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHH
Confidence 344555555555555555555555555543 344555555555555666666666666555543 23 23355555555
Q ss_pred HHHcCCHHHHH
Q 008925 425 WRAIGLAREAK 435 (548)
Q Consensus 425 ~~~~g~~~~A~ 435 (548)
+...|+.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.64 E-value=4.4e-07 Score=68.70 Aligned_cols=101 Identities=14% Similarity=0.015 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 008925 345 VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP--KKSTIQLVA 422 (548)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 422 (548)
...+..++..+...|++++|+..|+++++.. +.+...+..++.++...|++++|+..+++..+.. +. +...+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 4456666777777777777777777777664 4566677777777777777777777777777642 22 355677777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhccCC
Q 008925 423 DSWRAI-GLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 423 ~~~~~~-g~~~~A~~~~~~~~~~~~~ 447 (548)
.++... |++++|++.++++.+..|.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 777777 7777777777777655543
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.63 E-value=7.7e-08 Score=82.02 Aligned_cols=149 Identities=10% Similarity=-0.006 Sum_probs=76.7
Q ss_pred HHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----------------H
Q 008925 248 KGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDI----------------H 311 (548)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~ 311 (548)
......|+++.+.+.+....... ......+..+...+...|++++|...|.++++.. +.+. .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHH
Confidence 33344455555544444222211 1123345555666666666666666666666542 1222 5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (548)
++..+..+|...|++++|+..++++.+.. +.+...+..++.++...|++++|+..|+++++.. +.+...+..+..++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH
Confidence 56666666666666666666666666542 2245566666666666666666666666666653 445555666665555
Q ss_pred hcCChHHHH
Q 008925 392 EAKQPWRAE 400 (548)
Q Consensus 392 ~~g~~~~A~ 400 (548)
..++.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 555555444
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.63 E-value=4e-07 Score=70.29 Aligned_cols=96 Identities=14% Similarity=0.007 Sum_probs=68.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 008925 348 FTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-KKSTIQLVADSWR 426 (548)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 426 (548)
+..++..+.+.|++++|+..|+++++.. |.+...|..++.++...|++++|+..|++.++. .| +...+..++.++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 4456666777778888888888877764 556777777777777888888888888777764 34 3457777777777
Q ss_pred HcCCHHHHHHHHHHHHhccC
Q 008925 427 AIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~~ 446 (548)
..|++++|+..++++.+.+|
T Consensus 97 ~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HcCCHHHHHHHHHHHHHhCc
Confidence 88888888888877765544
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=1.7e-06 Score=66.12 Aligned_cols=95 Identities=12% Similarity=-0.002 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYG 391 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (548)
.+..++..+...|++++|...++++.... +.+...+..++..+...|++++|...++++.+.. +.+...+..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444555555555555555555554432 1234445555555555555555555555555543 334455555555555
Q ss_pred hcCChHHHHHHHHHHHH
Q 008925 392 EAKQPWRAEELLQVMEE 408 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~ 408 (548)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555554
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=1.9e-06 Score=65.76 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISG 354 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 354 (548)
...+..+...+...|++++|...++.+.... +.+...+..++.++...|++++|...++++.+.. +.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456667777778888888888888887764 5567777778888888888888888888877653 2346677777888
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008925 355 WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLW 388 (548)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (548)
+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 888888888888888887754 445555544443
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.60 E-value=2.6e-06 Score=67.30 Aligned_cols=100 Identities=12% Similarity=-0.024 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008925 307 EPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETL 386 (548)
Q Consensus 307 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 386 (548)
+.+...+..++..+...|++++|...|+++.... +.+...+..++.++...|++++|+..++++++.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3456677777777777777777777777776653 2345667777777777777777777777777764 5566777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 008925 387 LWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
+.++...|++++|+..|+++.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 7777778888888877777764
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.55 E-value=6.8e-07 Score=69.86 Aligned_cols=108 Identities=11% Similarity=0.088 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI--NPN----LKTYET 385 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~ 385 (548)
.+..++..+...|++++|...|+++.+.. +.+...+..++..+...|++++|...++++.+... +++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44455555555555555555555555432 22344555555555555556666655555554320 111 445555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008925 386 LLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVA 422 (548)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 422 (548)
++.++...|++++|...|+++.+. .|+......+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 566666666666666666666553 24444443333
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=3.3e-06 Score=67.62 Aligned_cols=97 Identities=11% Similarity=-0.011 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 008925 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYE 384 (548)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 384 (548)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|+..++++++.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3445555555555555555555555555543 233 3445555555555556666666655555543 33455555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 008925 385 TLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
.+..++...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555556666666666655554
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.53 E-value=1.6e-06 Score=71.12 Aligned_cols=99 Identities=10% Similarity=0.029 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
+...+..++..+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44677888888888889999998888888764 4567788888888888888888888888888764 345778888888
Q ss_pred HHhccCChHHHHHHHHHhhhC
Q 008925 108 GYGNVGKPEESLKLLQLMSQD 128 (548)
Q Consensus 108 ~~~~~g~~~~A~~~~~~~~~~ 128 (548)
+|...|++++|+..|++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888887764
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.49 E-value=1.3e-06 Score=67.41 Aligned_cols=93 Identities=6% Similarity=-0.077 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008925 314 SILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEA 393 (548)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (548)
..++..+.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|+..|+++++.. |.+...+..++.++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344455556666666666666665542 2244455556666666666666666666666554 44555566666666666
Q ss_pred CChHHHHHHHHHHHH
Q 008925 394 KQPWRAEELLQVMEE 408 (548)
Q Consensus 394 g~~~~A~~~~~~~~~ 408 (548)
|++++|+..++++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666554
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.48 E-value=3.1e-06 Score=63.86 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CHHHHHHH
Q 008925 28 TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKP--TTSTYNTL 105 (548)
Q Consensus 28 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 105 (548)
+...+..++..+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44567777888888888888888888887763 4467778888888888888888888888887763 33 56778888
Q ss_pred HHHHhcc-CChHHHHHHHHHhhhC
Q 008925 106 IKGYGNV-GKPEESLKLLQLMSQD 128 (548)
Q Consensus 106 ~~~~~~~-g~~~~A~~~~~~~~~~ 128 (548)
..++... |++++|++.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 8888888 8888888888887764
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.48 E-value=1.2e-06 Score=71.45 Aligned_cols=133 Identities=11% Similarity=0.013 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCC----HH
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVH-PN----VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGI-NPN----LK 381 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~ 381 (548)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...++++.+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556666666777777777777666542100 11 13566677777777777777777777665310 111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008925 382 TYETLLWGYGEAKQPWRAEELLQVMEEK----GVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (548)
.+..+...+...|++++|...+++..+. +..+. ...+..++.++...|++++|.+.++++.+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5667777888888888888888877632 11111 235667788888889999999988887643
No 172
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.48 E-value=1.8e-06 Score=68.61 Aligned_cols=102 Identities=12% Similarity=-0.060 Sum_probs=75.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-------CH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHC-----
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCEIGINP-------NL-----KTYETLLWGYGEAKQPWRAEELLQVMEEK----- 409 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 409 (548)
.+...+..+...|++++|+..|+++++.. |. +. ..|..+..++...|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34455555666677777777777766643 11 22 37888888888899999998888888873
Q ss_pred CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008925 410 GVRPKKS-TI----QLVADSWRAIGLAREAKRVLKSAEEDRQSMP 449 (548)
Q Consensus 410 ~~~p~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (548)
.+.|+.. .| ...+.++...|++++|+..|+++.+..|.-.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 1267755 77 8999999999999999999999987665443
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.47 E-value=2.2e-06 Score=66.82 Aligned_cols=112 Identities=9% Similarity=0.103 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC--CCC----HHHHH
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGV--HPN----VVMFT 349 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~ 349 (548)
..+..+...+...|++++|...++++++.. +.+...+..++..+...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456677777888888888888888888765 55677888888888888888888888888776421 112 56777
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 350 TVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGY 390 (548)
Q Consensus 350 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (548)
.++.++...|++++|.+.|+++.+. .|+......+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 8888888888999999999888885 35666655555443
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.47 E-value=1.6e-06 Score=84.69 Aligned_cols=118 Identities=12% Similarity=0.034 Sum_probs=53.1
Q ss_pred HHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH
Q 008925 249 GFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQK 328 (548)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (548)
.+...|++++|.+.+++..+..+ .+...+..+..++...|++++|+..++++++.. +.+..++..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 34444555555555555554431 134445555555555555555555555555443 3344455555555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--HhccCChHHHHHHHH
Q 008925 329 AESILTSMRKYGVHPNVVMFTTVISG--WCNAVKMQRAMSIYE 369 (548)
Q Consensus 329 A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 369 (548)
|+..|+++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555554432 1122233333333 444455555555544
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=9e-06 Score=65.00 Aligned_cols=112 Identities=11% Similarity=0.013 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHH
Q 008925 274 DVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPD----IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFT 349 (548)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 349 (548)
+...+..+...+...|++++|...|+++++. .|+ ...+..+..+|...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4556666777777777777777777777765 344 5567777777777788888887777777642 22456677
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 350 TVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 350 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
.+..++...|++++|...|+++++.. +.+...+..+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 77777777788888888888777754 3444555444443
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.42 E-value=3.7e-06 Score=81.73 Aligned_cols=129 Identities=10% Similarity=0.013 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 008925 310 IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPN--------------VVMFTTVISGWCNAVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (548)
...+..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|+..++++++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34556666666667777777777766665321110 4678888889999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHH-HHHH
Q 008925 376 INPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK-STIQLVADSWRAIGLAREAKRV-LKSA 441 (548)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~-~~~~ 441 (548)
+.+...|..+..+|...|++++|+..|+++++. .|+. ..+..++.++.+.|+.++|.+. ++++
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888999999999999999999999998874 4554 4788888888888888877653 3443
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.4e-05 Score=77.17 Aligned_cols=197 Identities=7% Similarity=0.042 Sum_probs=107.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC
Q 008925 36 VAALTRQKRFKSILSLISKVEKDGMKPD----------------SILFNAMINACSESGNVDEAMKIFQKMKDSGCK-PT 98 (548)
Q Consensus 36 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 98 (548)
++.+.+.|++++|++.|..+.+...... ...+..++..|...|++++|.+.+..+...-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4555667777777777777765421110 123566777788888888888877776542101 11
Q ss_pred H----HHHHHHHHHHhccCChHHHHHHHHHhhhC----CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC--
Q 008925 99 T----STYNTLIKGYGNVGKPEESLKLLQLMSQD----KNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS--GI-- 166 (548)
Q Consensus 99 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-- 166 (548)
. .+.+.+...+...|+.++|..+++..... .....-..++..++..+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12333344444566777777776655431 111122345566666777777777777777665432 10
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 167 -QPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQ--V-RP-N--ERTCGIIVSGYCKEGNMEDAMRFLYRMK 232 (548)
Q Consensus 167 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 232 (548)
+....++..+++.|...|++++|..++++..... . .| . ...+..++..+...|++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1113456666666777777777766666554321 1 11 1 1234444555556666666666555543
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=2.9e-05 Score=75.00 Aligned_cols=166 Identities=13% Similarity=0.029 Sum_probs=102.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHcCCChhhHHHHHHHHHHc----CCCCC-HHH
Q 008925 208 CGIIVSGYCKEGNMEDAMRFLYRMKELEVH-PNL----VVFNSLIKGFLDIKDSDGVDKALTLMEEF----GVKPD-VVT 277 (548)
Q Consensus 208 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~ 277 (548)
+..++..|...|++++|.+++.++...... ++. .+.+.+...+...|+++.+..++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445556666666666666666555432100 111 12233333344556677777666654432 22222 456
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHc--CC--CC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCCC--HH
Q 008925 278 FSTIMDAWSSAGLMGKCQEIFDDMVKA--GI--EP-DIHVFSILAKGYVRAGEPQKAESILTSMRKY----GVHPN--VV 346 (548)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~ 346 (548)
+..+...+...|++++|..+++.+... +. .+ ...++..++..|...|++++|..++++.... +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677888888888888888888877642 11 11 2457788888899999999999888877642 11111 23
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 347 MFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
.+..++..+...|++++|...|.++.+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566777778888999999988888765
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.38 E-value=5.1e-06 Score=64.74 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=41.0
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 008925 316 LAKGYVRAGEPQKAESILTSMRKYGVHPN-V---VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN---LKTYETLLW 388 (548)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 388 (548)
++..+...|++++|...|+.+.+.. |+ . ..+..++.++...|++++|+..|+++++.. +.+ ...+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3444445555555555555544421 11 1 234444444445555555555555554432 222 333444444
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 008925 389 GYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~ 408 (548)
++...|++++|...|+++.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555544443
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.38 E-value=1.2e-06 Score=85.65 Aligned_cols=118 Identities=10% Similarity=-0.014 Sum_probs=81.7
Q ss_pred cccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.+.+.|++++|+..|+++++..+. +..+|..++.++.+.|++++|++.++++.+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 456778888888888888876433 56778888888888888888888888887763 4456777778888888888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHH--HhccCChHHHHHHHH
Q 008925 83 AMKIFQKMKDSGCKPTTSTYNTLIKG--YGNVGKPEESLKLLQ 123 (548)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 123 (548)
|++.|+++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888877653 2233445555544 666777777777776
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.35 E-value=3.5e-06 Score=68.91 Aligned_cols=64 Identities=17% Similarity=0.063 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008925 381 KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
..|..+..+|.+.|++++|+..++++++.. +.+...+..++.++...|++++|+..++++.+.+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 344555555555555555555555555431 1123345555555555555555555555555443
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.34 E-value=1.3e-06 Score=81.14 Aligned_cols=151 Identities=9% Similarity=-0.018 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISG 354 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 354 (548)
...+..+...+...|++++|...|++++.. .|+... +...++.+++...+ ....|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 344556666677777777777777777765 233221 11223333332221 11367888889
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH-HHcCCHH
Q 008925 355 WCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSW-RAIGLAR 432 (548)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~-~~~g~~~ 432 (548)
|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++. .|+.. .+..+..+. ...+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875 567888999999999999999999999998763 45443 555555553 3456777
Q ss_pred HHHHHHHHHHhccCC
Q 008925 433 EAKRVLKSAEEDRQS 447 (548)
Q Consensus 433 ~A~~~~~~~~~~~~~ 447 (548)
++.+.++++....|.
T Consensus 317 ~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 317 KQKEMYKGIFKGKDE 331 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhCCCCC
Confidence 888888887755443
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.34 E-value=6.6e-06 Score=67.22 Aligned_cols=102 Identities=12% Similarity=0.036 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKY--------G---------VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
.+...+..+.+.|++++|+..|++.+.. . .+.+...|..+..+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555555555555555554432 0 0112356777888888888888888888888887
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 008925 375 GINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS 416 (548)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 416 (548)
. +.+...|..++.+|...|++++|+..|++.++. .|+..
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 5 667788888888888888888888888888774 45543
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=1.3e-05 Score=62.31 Aligned_cols=93 Identities=15% Similarity=0.063 Sum_probs=49.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 008925 351 VISGWCNAVKMQRAMSIYEKMCEIGINPNL---KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK----KSTIQLVAD 423 (548)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~ 423 (548)
++..+...|++++|...|+++++.. +.+. ..+..++.++...|++++|+..++++.+.. |+ ...+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 4444555566666666666555542 2222 345555555556666666666665555432 22 334555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhccC
Q 008925 424 SWRAIGLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 424 ~~~~~g~~~~A~~~~~~~~~~~~ 446 (548)
++...|++++|+..++++.+..|
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC
Confidence 55566666666666665555443
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.33 E-value=6.1e-06 Score=77.50 Aligned_cols=90 Identities=16% Similarity=0.067 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 008925 345 VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP-KKSTIQLVAD 423 (548)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 423 (548)
...|..+..+|.+.|++++|+..++++++.. +.+...+..+..+|...|++++|+..|+++.+. .| +...+..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4567778888888888888888888888764 556777888888888888888888888888764 34 4456667777
Q ss_pred HHHHcCCHHHHHHH
Q 008925 424 SWRAIGLAREAKRV 437 (548)
Q Consensus 424 ~~~~~g~~~~A~~~ 437 (548)
++...++.+++.+.
T Consensus 350 ~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 350 VKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766666543
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.32 E-value=2.4e-05 Score=77.72 Aligned_cols=154 Identities=8% Similarity=0.018 Sum_probs=125.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 008925 289 GLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGE----------PQKAESILTSMRKYGVHPNVVMFTTVISGWCNA 358 (548)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 358 (548)
...++|+..++.++..+ +.+..+|+.-..++...|+ +++++..++.+.+.. +-+..+|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34567899999999886 6677788888877777777 899999999999864 33677898888888888
Q ss_pred C--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-------
Q 008925 359 V--KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK-QPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAI------- 428 (548)
Q Consensus 359 g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 428 (548)
| +++++++.++++++.. +-|..+|..-..++.+.| .+++++++++++++.. .-+...|...+.++...
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 9 6799999999999987 678899999998999999 8999999999998753 33566888888777763
Q ss_pred -------CCHHHHHHHHHHHHhccC
Q 008925 429 -------GLAREAKRVLKSAEEDRQ 446 (548)
Q Consensus 429 -------g~~~~A~~~~~~~~~~~~ 446 (548)
+.+++|+++++++.+.+|
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC
Confidence 557889988888775554
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.32 E-value=1.5e-06 Score=66.57 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=68.0
Q ss_pred ccCChhhHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008925 6 GKGKPHEAHYIFNCLIEEG--HRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEA 83 (548)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 83 (548)
..|++++|+..|+++++.+ .+.+..++..++.++...|++++|+..|+++.+.. +.+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999998864 12245778888999999999999999999988874 55677888888899999999999
Q ss_pred HHHHHHHHhc
Q 008925 84 MKIFQKMKDS 93 (548)
Q Consensus 84 ~~~~~~~~~~ 93 (548)
+..|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988775
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.31 E-value=8.3e-07 Score=68.03 Aligned_cols=84 Identities=10% Similarity=-0.084 Sum_probs=36.0
Q ss_pred CCHhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 324 GEPQKAESILTSMRKYG--VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEE 401 (548)
Q Consensus 324 g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (548)
|++++|+..|+++++.+ -+.+...+..++.+|...|++++|+..|+++++.. |.+...+..++.++...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44444555555444421 01112334444444444444444544444444443 3334444444444444444444444
Q ss_pred HHHHHHH
Q 008925 402 LLQVMEE 408 (548)
Q Consensus 402 ~~~~~~~ 408 (548)
.+++.++
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.29 E-value=1.1e-05 Score=64.09 Aligned_cols=96 Identities=10% Similarity=-0.005 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHhccCChHHHHHHHHHHHHc------
Q 008925 312 VFSILAKGYVRAGEPQKAESILTSMRKYGVHP------N-----VVMFTTVISGWCNAVKMQRAMSIYEKMCEI------ 374 (548)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 374 (548)
.+...+..+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455566667777777777777776642110 1 237888888889999999999999998886
Q ss_pred -CCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 375 -GINPNLKTY----ETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 375 -~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
. |.+...| ...+.++...|++++|+..|++.++
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4 4455678 8899999999999999999999875
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.29 E-value=4.9e-06 Score=67.67 Aligned_cols=133 Identities=12% Similarity=0.012 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCC-CH
Q 008925 276 VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGI-EPD----IHVFSILAKGYVRAGEPQKAESILTSMRKY----GVHP-NV 345 (548)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~ 345 (548)
.++..+...+...|++++|...++++++... .++ ..++..+...+...|++++|...+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4566677777788888888888877764310 011 136777888888888999888888887642 1111 13
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEI----GINP-NLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
..+..+...+...|++++|...++++++. +.++ ...++..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 46677888888899999999999888753 1111 134577788889999999999999988764
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.28 E-value=9.3e-06 Score=76.27 Aligned_cols=122 Identities=11% Similarity=0.075 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH----------------cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 008925 277 TFSTIMDAWSSAGLMGKCQEIFDDMVK----------------AGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYG 340 (548)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (548)
.+..+...+.+.|++++|+..|+++++ .. +.+..+|..+..+|.+.|++++|+..++++++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 355566667777777777777777665 21 3345678889999999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008925 341 VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEE 401 (548)
Q Consensus 341 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (548)
+.+...+..+..+|...|++++|+..|+++++.. +.+...+..+..++...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356788899999999999999999999999875 5577778888888877777766654
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.28 E-value=9.5e-06 Score=78.82 Aligned_cols=130 Identities=15% Similarity=0.044 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 008925 275 VVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPD---------------IHVFSILAKGYVRAGEPQKAESILTSMRKY 339 (548)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (548)
...+..+...+.+.|++++|...|+++++.. +.+ ..+|..+..+|.+.|++++|+..++++++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4567777888888888999988888888753 333 578889999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHH
Q 008925 340 GVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEE-LLQVME 407 (548)
Q Consensus 340 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 407 (548)
. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..++.+.|+.+++.+ .++.|.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3367788999999999999999999999999875 5566788888888888888887764 444443
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.27 E-value=4.8e-05 Score=75.61 Aligned_cols=173 Identities=10% Similarity=0.015 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-
Q 008925 221 MEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKD----------SDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAG- 289 (548)
Q Consensus 221 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 289 (548)
.++|++.+++++..+ |.+..+|+.-...+...++ ++++.+.++.+.+..++ +..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 356677777776654 4445666666555555555 67777777777776544 6667777777777777
Q ss_pred -ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---------
Q 008925 290 -LMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAG-EPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA--------- 358 (548)
Q Consensus 290 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 358 (548)
++++++..++++.+.+ +.+..+|+....++.+.| .++++++.++++.+.++ -|..+|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccccc
Confidence 5588888888888776 566777777777777777 77788888877777542 3566676666555442
Q ss_pred -----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 359 -----VKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWR 398 (548)
Q Consensus 359 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (548)
+.++++++++++++... |.|...|..+...+.+.+++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55788999999998875 6677888888888888777444
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.24 E-value=2.6e-06 Score=82.58 Aligned_cols=132 Identities=6% Similarity=-0.147 Sum_probs=100.8
Q ss_pred HHhccCChHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCH-HHHH
Q 008925 354 GWCNAVKMQRAMSIYEKMCEI-----G-INPN-LKTYETLLWGYGEAKQPWRAEELLQVMEE-----KGV-RPKK-STIQ 419 (548)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~-~~~~ 419 (548)
.+..+|++++|+.+++++++. | -.|+ ..+++.|+.+|...|++++|..++++.++ .|- .|+. .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999998863 2 1122 35688999999999999999999998863 221 2333 3788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhccccccccccccccccccccCCCChhhhhhhhhhc
Q 008925 420 LVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSASNSTFLQIPGVVSSEHNGSSAAKIRSQIVL 498 (548)
Q Consensus 420 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~ 498 (548)
.++.+|..+|++++|+.+++++.+......|..++...+.. ..|+..+..++++.+|+.+++++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~-------------~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLE-------------AMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998777666666655555433 2356678888889999999988855
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.22 E-value=4.1e-05 Score=60.33 Aligned_cols=108 Identities=13% Similarity=0.009 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHH
Q 008925 291 MGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCN----AVKMQRAMS 366 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 366 (548)
+++|...|++..+.+ .++.. |...|...+.+++|+..|++..+.| +...+..|...|.. .+++++|++
T Consensus 11 ~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 11 LKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 444555555554444 22222 4444444444444555555554432 33444444444444 445555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHC
Q 008925 367 IYEKMCEIGINPNLKTYETLLWGYGE----AKQPWRAEELLQVMEEK 409 (548)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 409 (548)
.|+++.+.| +...+..|...|.. .+++++|..+|++..+.
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555555433 34444444444444 44555555555555443
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.21 E-value=9.2e-06 Score=75.43 Aligned_cols=149 Identities=7% Similarity=-0.041 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 310 IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
...+..+...+.+.|++++|+..|+++... .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 344555666666667777777777666653 233221 223333333332221 1378889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhcccccc
Q 008925 390 YGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQNLSAS 469 (548)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (548)
|.+.|++++|+..+++.++.. +.+...+..++.++...|++++|+..++++.+.+| .+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p---------------------~~ 297 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP---------------------DD 297 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------------CC
Confidence 999999999999999999753 23566899999999999999999999999765443 23
Q ss_pred ccccccccccc-cccCCCChhhhhhhhhhcc
Q 008925 470 NSTFLQIPGVV-SSEHNGSSAAKIRSQIVLR 499 (548)
Q Consensus 470 ~~~~~~l~~~y-~~~~~~~~a~~~~~~~~~~ 499 (548)
...+..|+.+. ...+..+.+.++++++...
T Consensus 298 ~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 298 KAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 33444455553 3345556666666666543
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.5e-06 Score=65.64 Aligned_cols=93 Identities=9% Similarity=-0.055 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------HH
Q 008925 344 NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPK-------KS 416 (548)
Q Consensus 344 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~ 416 (548)
+...+..++..+...|++++|+..|+++++.. +.+...+..++.++...|++++|+..++++++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 45566777777778888888888888887764 556777778888888888888888888887764 344 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 008925 417 TIQLVADSWRAIGLAREAKRVLK 439 (548)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~ 439 (548)
.+..++.++...|++++|+..++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 44555555555555555444433
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.16 E-value=0.00011 Score=57.75 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=94.6
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHH
Q 008925 324 GEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE----AKQPWRA 399 (548)
Q Consensus 324 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 399 (548)
+++++|+..|++..+.| .|+.. +...|...+.+++|++.|+++.+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46889999999999987 33433 7788888888999999999999975 77888899999988 8999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 008925 400 EELLQVMEEKGVRPKKSTIQLVADSWRA----IGLAREAKRVLKSAEED 444 (548)
Q Consensus 400 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 444 (548)
+++|++..+.| +......++..|.. .++.++|.++++++.+.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 99999999864 56788889999998 89999999999998654
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.00 E-value=1.9e-05 Score=62.54 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=76.5
Q ss_pred cccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008925 5 VGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRF----------KSILSLISKVEKDGMKPDSILFNAMINAC 74 (548)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (548)
-+.+.+++|+..++.+++.++. +...|..++.++...+++ ++|+..|++.++.. |.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3557789999999999988654 888999899888888765 48899999888864 44677888888888
Q ss_pred HhcC-----------ChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 75 SESG-----------NVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 75 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
...| ++++|++.|++.++. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8764 788888888888875 566555544443
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.00 E-value=1.7e-05 Score=62.85 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHCCCCCCHH
Q 008925 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK-----------QPWRAEELLQVMEEKGVRPKKS 416 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~ 416 (548)
+++|+..|+++++.. |.+..+|..+..+|...| ++++|+..|+++++. .|+..
T Consensus 62 ~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCH
Confidence 446666666666654 445566666666666543 566666666666653 45543
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=5.5e-05 Score=73.32 Aligned_cols=124 Identities=7% Similarity=-0.065 Sum_probs=72.2
Q ss_pred HHHcCCHhHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHc-----C-CCCC-HHHHHH
Q 008925 320 YVRAGEPQKAESILTSMRKY-----G-VHPN-VVMFTTVISGWCNAVKMQRAMSIYEKMCEI-----G-INPN-LKTYET 385 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~ 385 (548)
+...|++++|+.++++.++. | -+|+ ..+++.|+..|...|++++|+.+++++++. | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666665431 1 1222 235666777777777777777777766642 2 0122 234667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 386 LLWGYGEAKQPWRAEELLQVMEE---KGVRPK----KSTIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
|+..|...|++++|..+++++++ .-+-|+ ..+...+..++...|.+++|+.++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776652 111233 22444555666677777777777777763
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.99 E-value=3.3e-05 Score=58.64 Aligned_cols=77 Identities=18% Similarity=0.060 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
|+..|+++++.. +.+...+..++.+|...|++++|+..|++.++.. +.+...+..++.++...|++++|+..++++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444432 3334444444444445555555555554444421 1123344444445555555555555555444
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=1e-05 Score=60.96 Aligned_cols=92 Identities=9% Similarity=-0.026 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC------HHHH
Q 008925 310 IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPN------LKTY 383 (548)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~ 383 (548)
...+..++..+...|++++|+..|+++.+.. +.+...+..++.++...|++++|+..++++++.. +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 3455556666666666666666666666542 2245556666666666666666666666666543 222 4445
Q ss_pred HHHHHHHHhcCChHHHHHHH
Q 008925 384 ETLLWGYGEAKQPWRAEELL 403 (548)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~ 403 (548)
..+..++...|+.++|+..+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 55555555555555554433
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.93 E-value=0.00011 Score=52.65 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSW 425 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (548)
..+..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|...+++..+.. +.+...+..++.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555666666666666666666543 3455556666666666666666666666665532 12233455555544
Q ss_pred HH
Q 008925 426 RA 427 (548)
Q Consensus 426 ~~ 427 (548)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.92 E-value=9.6e-05 Score=56.02 Aligned_cols=81 Identities=10% Similarity=0.141 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008925 11 HEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKM 90 (548)
Q Consensus 11 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 90 (548)
++|+..|+.+++..+. +...+..++..+...|++++|+..|++..+.. +.+...+..+..+|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677888888776543 66778888888888888888888888887763 445667778888888888888888888877
Q ss_pred Hhc
Q 008925 91 KDS 93 (548)
Q Consensus 91 ~~~ 93 (548)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.86 E-value=0.00018 Score=51.57 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008925 310 IHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWG 389 (548)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (548)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...|+++.+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455666666667777777777776666542 2245566666667777777777777777776654 4455566666555
Q ss_pred HHh
Q 008925 390 YGE 392 (548)
Q Consensus 390 ~~~ 392 (548)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.81 E-value=5.6e-05 Score=71.95 Aligned_cols=103 Identities=12% Similarity=-0.072 Sum_probs=78.1
Q ss_pred ccCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCHH-HHHHHH
Q 008925 357 NAVKMQRAMSIYEKMCEI---GINPN----LKTYETLLWGYGEAKQPWRAEELLQVMEE-----KGV-RPKKS-TIQLVA 422 (548)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~~-~~~~l~ 422 (548)
..|++++|+.+++++++. -+.|+ ..+++.|+.+|...|++++|+.+++++++ .|- .|+.. ++..++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999988762 12222 35688899999999999999999998863 221 24433 788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHH
Q 008925 423 DSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVES 459 (548)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (548)
.+|..+|++++|+.+++++.++.....|..++...+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 9999999999999999999887776666666555543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.72 E-value=0.00018 Score=52.89 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 345 VVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
...+..++..|...|++++|+..|+++++.. +.+...|..++.+|...|++++|+..+++.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444555555555555555554443 3334444444455555555555555444443
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.71 E-value=0.00015 Score=69.26 Aligned_cols=111 Identities=12% Similarity=0.001 Sum_probs=79.8
Q ss_pred HHHHhccCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CC-CCCCH-HH
Q 008925 352 ISGWCNAVKMQRAMSIYEKMCEI---GINPN----LKTYETLLWGYGEAKQPWRAEELLQVMEE-----KG-VRPKK-ST 417 (548)
Q Consensus 352 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~~-~~ 417 (548)
+..+...|++++|+.+++++++. -+.|+ ..+++.|+.+|...|++++|+.+++++++ .| -.|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455678888898888888853 12222 34678888889999999999999888763 22 12333 36
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHh
Q 008925 418 IQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHR 462 (548)
Q Consensus 418 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (548)
+..++.+|..+|++++|+.+++++.++.....|..++...+.+..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 418 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILL 418 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 788899999999999999999998877776666666655544433
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.70 E-value=0.00018 Score=52.86 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 008925 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCE 373 (548)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (548)
+...+..++.+|...|++++|+..|+++.+.+ +.+...|..++.+|...|++++|++.|+++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444445555555555555555555544432 11233444455555555555555555554443
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.46 E-value=0.00036 Score=50.97 Aligned_cols=82 Identities=12% Similarity=0.046 Sum_probs=50.7
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHc
Q 008925 351 VISGWCNAVKMQRAMSIYEKMCEIGINPNLK-TYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKS-TIQLVADSWRAI 428 (548)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~ 428 (548)
.+..+...|++++|+..|+++++.. +.+.. .+..++.+|...|++++|+..|++.++. .|+.. .+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH--------
Confidence 3445566677777777777777654 44556 6777777777777777777777777764 34332 2211
Q ss_pred CCHHHHHHHHHHHHh
Q 008925 429 GLAREAKRVLKSAEE 443 (548)
Q Consensus 429 g~~~~A~~~~~~~~~ 443 (548)
+.+.+|...+++...
T Consensus 75 ~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 KMVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHHHhc
Confidence 445566666655443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.43 E-value=0.00014 Score=69.28 Aligned_cols=94 Identities=10% Similarity=-0.028 Sum_probs=71.5
Q ss_pred hcCChHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHHHHhhc
Q 008925 392 EAKQPWRAEELLQVMEE---KGVRPK----KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVESIHRKQ 464 (548)
Q Consensus 392 ~~g~~~~A~~~~~~~~~---~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (548)
..|++++|+.++++.++ .-+.|+ ..++..++.+|...|++++|+.+++++++......+..++..+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a------- 382 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA------- 382 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH-------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH-------
Confidence 46899999999998874 222333 3478899999999999999999999988666555444444443
Q ss_pred cccccccccccccccccccCCCChhhhhhhhhhc
Q 008925 465 NLSASNSTFLQIPGVVSSEHNGSSAAKIRSQIVL 498 (548)
Q Consensus 465 ~~~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~ 498 (548)
..+..||.+|..+|++++|+.+.++.+.
T Consensus 383 ------~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 383 ------SMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp ------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3445588899999999999998887644
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.39 E-value=0.0031 Score=57.53 Aligned_cols=71 Identities=11% Similarity=0.022 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 008925 344 NVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTI 418 (548)
Q Consensus 344 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 418 (548)
+..++..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.++++... .|...++
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 34445544444444456666666666665543 45555555555555566666666666555542 3444443
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.35 E-value=0.0018 Score=50.69 Aligned_cols=87 Identities=11% Similarity=0.097 Sum_probs=60.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHH
Q 008925 360 KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAK---QPWRAEELLQVMEEKGVRP--KKSTIQLVADSWRAIGLAREA 434 (548)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 434 (548)
....+.+.|.+..+.+ +++..+...+.+++++++ +.++++.++++..+.. .| ..+.+..++-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455666666666655 567777777778888777 5557888887777643 24 244666777777888888888
Q ss_pred HHHHHHHHhccCCC
Q 008925 435 KRVLKSAEEDRQSM 448 (548)
Q Consensus 435 ~~~~~~~~~~~~~~ 448 (548)
+++++.+++.+|..
T Consensus 91 ~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 88888887776644
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.27 E-value=0.00054 Score=65.35 Aligned_cols=99 Identities=9% Similarity=-0.062 Sum_probs=74.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcchhHHHHH
Q 008925 387 LWGYGEAKQPWRAEELLQVMEEK---GVRPK----KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSMPNKKDEIAVES 459 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (548)
+..+...|++++|+.++++.++. -+.|+ ..++..++.+|...|++++|+.+++++++......+..++..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~--- 370 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR--- 370 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH---
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH---
Confidence 44566789999999999999853 12233 347888999999999999999999998766554444434333
Q ss_pred HHhhccccccccccccccccccccCCCChhhhhhhhhhc
Q 008925 460 IHRKQNLSASNSTFLQIPGVVSSEHNGSSAAKIRSQIVL 498 (548)
Q Consensus 460 l~~~~~~~~~~~~~~~l~~~y~~~~~~~~a~~~~~~~~~ 498 (548)
+..+..||.+|..+|++++|+.+.++.+.
T Consensus 371 ----------a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 371 ----------GVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33455588889999999999998876643
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.14 E-value=0.0085 Score=54.68 Aligned_cols=65 Identities=14% Similarity=0.002 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008925 168 PDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRMKEL 234 (548)
Q Consensus 168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 234 (548)
.+..+|..+...+...|++++|...+++++..+ |+...+..+...+.-.|++++|.+.|+++...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344455444444444455555555555555443 34444444555555555555555555555543
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.02 E-value=0.0073 Score=43.21 Aligned_cols=64 Identities=6% Similarity=-0.073 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHhccCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 344 NVVMFTTVISGWCNAVK---MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 344 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
|...+..+..++...++ .++|..+++++++.. |.+......++..+...|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555544433222 456666666666554 44555555555666666666666666666554
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.02 E-value=0.014 Score=41.66 Aligned_cols=69 Identities=10% Similarity=-0.044 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008925 377 NPNLKTYETLLWGYGEAKQ---PWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 447 (548)
++|...+..+..++...++ .++|..++++.++. .|+ ...+..++..+...|++++|+..|+++.+.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6788888899988875555 79999999999985 455 558888899999999999999999999977766
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.81 E-value=0.01 Score=42.96 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=31.3
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHc
Q 008925 317 AKGYVRAGEPQKAESILTSMRKYGVHPNVV-MFTTVISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
+..+...|++++|+..++++.+.. +.+.. .+..++.++...|++++|+..|+++++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344555566666666666555532 12334 5555555566666666666666666554
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.81 E-value=0.008 Score=46.99 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=66.8
Q ss_pred cccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCC
Q 008925 5 VGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQK---RFKSILSLISKVEKDGMKP--DSILFNAMINACSESGN 79 (548)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 79 (548)
...+....+.+-|.+..+.+. ++..+...+.-++++++ ++++++.+|+...+.+ .| +...+..|.-+|.+.|+
T Consensus 9 l~~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 9 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccC
Confidence 344556677777887777655 57888888888888877 6668899998888764 23 34456667777889999
Q ss_pred hHHHHHHHHHHHhcCCCCC
Q 008925 80 VDEAMKIFQKMKDSGCKPT 98 (548)
Q Consensus 80 ~~~A~~~~~~~~~~~~~~~ 98 (548)
+++|++.++.+++. +|+
T Consensus 87 Y~~A~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 87 YEKALKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHHhc--CCC
Confidence 99999999998885 454
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.69 E-value=0.012 Score=43.19 Aligned_cols=63 Identities=8% Similarity=-0.137 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 346 VMFTTVISGWCNAVKMQRAMSIYEKMCEIG------INPNLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
.-+..++..+...|++..|...|+++++.. -.+....+..|..++.+.|++++|..+++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334445555555555555555555554420 012234445555555555555555555555544
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.098 Score=42.00 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=51.7
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHH
Q 008925 40 TRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESL 119 (548)
Q Consensus 40 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 119 (548)
.+.|+++.|.++.+.+ .+...|..|.......|+++-|..+|.+... +..+.-.|...|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4456666666665544 2455666666666666666666666666542 233444444555555544
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008925 120 KLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYK 160 (548)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (548)
++-+.....+ -++.....+.-.|+++++.++|.+
T Consensus 81 kla~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4443332221 133334444555666666666544
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.64 E-value=0.11 Score=54.33 Aligned_cols=152 Identities=11% Similarity=0.100 Sum_probs=86.0
Q ss_pred HccCCHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHH
Q 008925 40 TRQKRFKSILS-LISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEES 118 (548)
Q Consensus 40 ~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 118 (548)
...++++.|.+ ++.. ++ +......++..+.+.|..+.|+++.+... . -.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~---------~---~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQD---------Q---KFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH---------H---HHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCcc---------h---heehhhhcCCHHHH
Confidence 35677777766 4421 11 12223666667777777777776543211 1 12234456778887
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 119 LKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQN 198 (548)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 198 (548)
.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.+....
T Consensus 672 ~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 672 RDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 7765433 3567777888888888888888888877632 33444455556666665555554444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008925 199 NQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRM 231 (548)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 231 (548)
.+. ++....+|.+.|++++|++++.++
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 321 222333455566666666655443
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.59 E-value=0.012 Score=44.10 Aligned_cols=87 Identities=10% Similarity=0.065 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHH
Q 008925 360 KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWR---AEELLQVMEEKGVRP--KKSTIQLVADSWRAIGLAREA 434 (548)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 434 (548)
....+.+-|.+....| .++..+-..+.+++.++..... ++.+++.....+ .| ....+..++-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445555666665555 4677777777777777776655 777777766542 23 233555667777788888888
Q ss_pred HHHHHHHHhccCCC
Q 008925 435 KRVLKSAEEDRQSM 448 (548)
Q Consensus 435 ~~~~~~~~~~~~~~ 448 (548)
+++++.+++..|..
T Consensus 94 ~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCC
Confidence 88888777666543
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.49 E-value=0.032 Score=40.84 Aligned_cols=66 Identities=11% Similarity=0.027 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 008925 309 DIHVFSILAKGYVRAGEPQKAESILTSMRKYG------VHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (548)
+..-+..|+..+...|+++.|...|+.+.+.- -.+....+..+..++.+.|++++|..+++++++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445556666666666666666666555420 0123445666666666777777777777776664
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.37 E-value=0.027 Score=49.21 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHc-C
Q 008925 361 MQRAMSIYEKMCEIGINPN---LKTYETLLWGYGE-----AKQPWRAEELLQVMEEKGVRPK--KSTIQLVADSWRAI-G 429 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~-g 429 (548)
...|...++++++. .|+ ...|..|+..|.. -|+.++|.++|++.++. .|+ ..+...+++.+++. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 45566666666664 344 3456666666666 36666677777666663 342 44555666666653 6
Q ss_pred CHHHHHHHHHHHHhccCC
Q 008925 430 LAREAKRVLKSAEEDRQS 447 (548)
Q Consensus 430 ~~~~A~~~~~~~~~~~~~ 447 (548)
+.++|.++++++...++.
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 666666666666655544
No 227
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.16 E-value=1.5 Score=45.46 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=71.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhCC
Q 008925 212 VSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVT--FSTIMDAWSSAG 289 (548)
Q Consensus 212 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 289 (548)
+..+...|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+.+.+.... .|.... ...+.-+|+..|
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSC
T ss_pred hhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCC
Confidence 344455566666666665555421 1122222333333445566666666666665531 122111 112334455666
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh-HHHHHHH
Q 008925 290 LMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKM-QRAMSIY 368 (548)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~ 368 (548)
+......++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+++.++
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 6665555666665431 1222222222233344555555566665555432 23333222233333333332 4566666
Q ss_pred HHHHH
Q 008925 369 EKMCE 373 (548)
Q Consensus 369 ~~~~~ 373 (548)
..+..
T Consensus 653 ~~L~~ 657 (963)
T 4ady_A 653 DPLTK 657 (963)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 66654
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.11 E-value=0.3 Score=51.06 Aligned_cols=27 Identities=4% Similarity=-0.134 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHh
Q 008925 99 TSTYNTLIKGYGNVGKPEESLKLLQLM 125 (548)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 125 (548)
...|..+...+.+.|+++.|++.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344444555555555555555444444
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.16 Score=40.71 Aligned_cols=130 Identities=13% Similarity=0.080 Sum_probs=80.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 008925 283 DAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQ 362 (548)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 362 (548)
......|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445778888888876654 4677888888888888888888888877643 333444455567776
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 363 RAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
.-.++-+.+...| + ++.-...+.-.|++++++++|.+.-+ .|... -.....|..+.|.++.+++.
T Consensus 78 ~L~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 6665555555544 1 33334455567888888887754321 12111 11123567777777777654
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.03 E-value=0.073 Score=46.56 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-CCh
Q 008925 291 MGKCQEIFDDMVKAGIEPD---IHVFSILAKGYVRA-----GEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA-VKM 361 (548)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~ 361 (548)
...|...++++++. .|+ ...|..|+..|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566667777666 344 44677777777773 77777777777777743211356666677777663 777
Q ss_pred HHHHHHHHHHHHcCCC
Q 008925 362 QRAMSIYEKMCEIGIN 377 (548)
Q Consensus 362 ~~A~~~~~~~~~~~~~ 377 (548)
++|.+++++++.....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777775433
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.83 E-value=0.4 Score=36.08 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=27.0
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 008925 316 LAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIG 375 (548)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (548)
.+..+...|.-+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++.+.|
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 334444444444444444443221 23444444445555555555555555555555444
No 232
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.79 E-value=2.5e-06 Score=79.00 Aligned_cols=201 Identities=15% Similarity=0.154 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 008925 66 LFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAW 145 (548)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (548)
.|..|..++...++..+|++.|=+. .|+..|..++.+..+.|.+++-++++.-.++. ..++..=+.|+-+|
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ay 126 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFAL 126 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHH
Confidence 4666666666666666665544322 13344556666666666666666655544332 22333334566666
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------------CCCCCH
Q 008925 146 CSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNN--------------------QVRPNE 205 (548)
Q Consensus 146 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------------~~~~~~ 205 (548)
++.++..+..+++. .|+..-...+++-|...|.++.|.-+|..+..- .-.-++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 66666544332221 244444555556666666665555544433211 001234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008925 206 RTCGIIVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAW 285 (548)
Q Consensus 206 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (548)
.||..+-.+|...+++.-|.-+--.++- .++ -...++..|-..|-+++.+.+++...... ......|+-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 5555555555555555544433222221 111 11223444555556666555555544321 33455555555555
Q ss_pred HhC
Q 008925 286 SSA 288 (548)
Q Consensus 286 ~~~ 288 (548)
++-
T Consensus 274 sKY 276 (624)
T 3lvg_A 274 SKF 276 (624)
T ss_dssp HSS
T ss_pred Hhc
Confidence 544
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.38 E-value=0.14 Score=38.33 Aligned_cols=65 Identities=9% Similarity=-0.064 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHhccCChHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008925 343 PNVVMFTTVISGWCNAVKMQR---AMSIYEKMCEIGINP--NLKTYETLLWGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 343 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (548)
|+..+-..+..++.+..+..+ ++.+++...+.+ .| .....-.|.-++.+.|++++|.++++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444443333 444444444432 12 122333444455555555555555555554
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.36 E-value=0.22 Score=38.44 Aligned_cols=101 Identities=10% Similarity=-0.050 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHcCCH------hHHHHHHHHHHhCCCCCCHH-HHHHHHHH------HhccCChHHHHHHHHHHHHc
Q 008925 308 PDIHVFSILAKGYVRAGEP------QKAESILTSMRKYGVHPNVV-MFTTVISG------WCNAVKMQRAMSIYEKMCEI 374 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~p~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~~~ 374 (548)
.|..+|...+...-+.|++ ++..++|+++... ++|+.. .|...+.. +...++.++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3455555555555555555 5555555555543 333311 11111111 11224555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008925 375 GINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (548)
. .-=...|.....--.+.|+..+|.+++.+.+..+
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 1 1113444444444455555555555555555443
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.28 E-value=0.67 Score=34.94 Aligned_cols=62 Identities=11% Similarity=-0.003 Sum_probs=29.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008925 348 FTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKG 410 (548)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (548)
.+..+..+..+|+-++-.+++..++.. .+|++..+..+..+|.+.|+..+|.+++.++-+.|
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 334444444455555544444443322 24445555555555555555555555555554444
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.10 E-value=3.8 Score=42.61 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=23.3
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHhHHHHHHHHHHh
Q 008925 286 SSAGLMGKCQEIFDDMVKAGIEPDIHV--FSILAKGYVRAGEPQKAESILTSMRK 338 (548)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (548)
...|+.+.+..+.+.+.... .|.... ...+.-+|+..|+.....+++..+.+
T Consensus 535 l~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 535 INYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 34555555555555554421 111111 11233344555555544445555554
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.61 E-value=0.25 Score=38.12 Aligned_cols=24 Identities=17% Similarity=-0.000 Sum_probs=9.7
Q ss_pred HHHHHcCCChhhHHHHHHHHHHcC
Q 008925 247 IKGFLDIKDSDGVDKALTLMEEFG 270 (548)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~~ 270 (548)
.+.-.+.|+...|.+++......+
T Consensus 101 AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 101 AQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHhccC
Confidence 333333444444444444444433
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.07 E-value=0.0095 Score=55.77 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=43.2
Q ss_pred ccccCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 008925 4 LVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDE 82 (548)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 82 (548)
.++.|+..+|++.|-++ .|+..|..++.+..+.|.+++-+..+.-..+. ..++.+=+.|+-+|++.++..+
T Consensus 64 qL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~e 134 (624)
T 3lvg_A 64 QLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAE 134 (624)
T ss_dssp TTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSST
T ss_pred HHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHH
Confidence 34455666666555422 24455677777777888888877777655543 2233444567777777776554
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.03 E-value=4.2 Score=38.71 Aligned_cols=50 Identities=10% Similarity=0.190 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008925 43 KRFKSILSLISKVEKD-----GMKPDSILFNAMINACSESGNVDEAMKIFQKMKD 92 (548)
Q Consensus 43 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 92 (548)
|+++.|++.+..+.+. +..........++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6677777766555432 2233455667777777777777777666655543
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.95 E-value=1.5 Score=33.59 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 377 NPNLKTYETLLWGYGEAKQPW---RAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.|+..+-..+.+++.++...+ +++.+++.+...+..-..+.+..++-++.+.|++++|+++.+.+++..|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 566777677777777766543 567777777654211123455566777778888888888888777666543
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.64 E-value=0.86 Score=34.35 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008925 377 NPNLKTYETLLWGYGEAKQP---WRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEEDRQSM 448 (548)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 448 (548)
.|+..+--.+.+++.++.+. .+++.+++++.+.+..-..+.+..++-++.+.|++++|+++.+.+++..|..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 56777777777777777654 3577777777764311124466667777888888888888888877666543
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.34 E-value=0.67 Score=43.34 Aligned_cols=77 Identities=10% Similarity=0.024 Sum_probs=60.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHHHHHHHH
Q 008925 348 FTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME-----EKGVRPKKSTIQLVA 422 (548)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~l~ 422 (548)
...++..+...|++.+|+..++.+.... |-+...+..++.++.+.|+..+|++.|++.. +.|+.|+..+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4456677778899999999888888765 6688889999999999999999999988864 468889887665443
Q ss_pred HHH
Q 008925 423 DSW 425 (548)
Q Consensus 423 ~~~ 425 (548)
.++
T Consensus 253 ~il 255 (388)
T 2ff4_A 253 RIL 255 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.63 E-value=0.87 Score=46.20 Aligned_cols=54 Identities=9% Similarity=-0.240 Sum_probs=41.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 387 LWGYGEAKQPWRAEELLQVMEEKGVRPK-KSTIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
+.-|...|+++-|+++-++.... .|+ ..+|..|+.+|...|+++.|+-.+..++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44566778888888888888764 454 5688888888888888888888888875
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.34 E-value=0.49 Score=37.31 Aligned_cols=126 Identities=10% Similarity=0.141 Sum_probs=69.3
Q ss_pred cccccCChhhHHHHHHHHHHCC-CCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH
Q 008925 3 ILVGKGKPHEAHYIFNCLIEEG-HRPTL-------ITYTTLVAALTRQKRFKSILSLISKVEKD--GMKPDSILFNAMIN 72 (548)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~ 72 (548)
.+...|.++.|+.+.+.++... ..|+. .++..++.++...|+|.+|...|++.+.. .+..+..+...+.
T Consensus 29 ~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~- 107 (167)
T 3ffl_A 29 DMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG- 107 (167)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc-
Confidence 4567788888888888765531 12231 35677788888999999999999886432 1111111111110
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 008925 73 ACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRA 144 (548)
Q Consensus 73 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (548)
....... ......+...---+..+|.+.+++++|+.+++.++.. ..+...-..|.+.
T Consensus 108 ---~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k---~Rt~kvnm~LakL 164 (167)
T 3ffl_A 108 ---NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR---QRTPKINMLLANL 164 (167)
T ss_dssp ---------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG---GCCHHHHHHHHHH
T ss_pred ---ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch---hcCHHHHHHHHHH
Confidence 0000000 0011234455555778888888888888888887553 3444444444443
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.97 E-value=1.8 Score=44.02 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=38.5
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008925 354 GWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVM 406 (548)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (548)
.|...|+++-|+++-++++..- |.+..+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456777888888888877763 555677888888888888888887777665
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.73 E-value=1.9 Score=32.49 Aligned_cols=72 Identities=8% Similarity=0.005 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008925 342 HPNVVMFTTVISGWCNAV---KMQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK 415 (548)
Q Consensus 342 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 415 (548)
.|+..+-..+..++.+.. +..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.++.+.+++. .|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 456666555666665544 34567777777776541113455666777788888888888888887763 5653
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.73 E-value=1.5 Score=40.96 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh----CCCCCCCHHH
Q 008925 68 NAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQ----DKNVKPNDRT 137 (548)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~ 137 (548)
..++..+...|++++|+..+..+.... +-+...+..++.++.+.|+..+|++.|+.+.+ +-|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344555556666666666666555442 33555666666666666666666666555432 2245555544
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.16 E-value=7.3 Score=42.37 Aligned_cols=23 Identities=4% Similarity=-0.050 Sum_probs=12.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHh
Q 008925 103 NTLIKGYGNVGKPEESLKLLQLM 125 (548)
Q Consensus 103 ~~l~~~~~~~g~~~~A~~~~~~~ 125 (548)
-.++.++...|++++|.+.|.+.
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 34445555555666666555544
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.93 E-value=1.6 Score=34.39 Aligned_cols=134 Identities=10% Similarity=0.028 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCH
Q 008925 30 ITYTTLVAALTRQKRFKSILSLISKVEKDG-MKPD-------SILFNAMINACSESGNVDEAMKIFQKMKDS--GCKPTT 99 (548)
Q Consensus 30 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 99 (548)
.++..-+..+...|.++.|+-+.+.+.... ..|+ ..++..+.+++...|++..|...|++.++. .+..+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345555777888899999988888765321 1233 135667778888999999999999997543 111111
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008925 100 STYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARA 179 (548)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 179 (548)
.+...+. ....... ......+...-.-+..+|.+.+++++|+.+++.+... ..+..+--.|.+.
T Consensus 101 s~~~~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt~kvnm~LakL 164 (167)
T 3ffl_A 101 KVRPSTG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRTPKINMLLANL 164 (167)
T ss_dssp ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCCHHHHHHHHHH
T ss_pred Ccccccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcCHHHHHHHHHH
Confidence 1111110 0000000 0012334455556888999999999999999987654 2344444444443
No 250
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.59 E-value=15 Score=36.60 Aligned_cols=322 Identities=11% Similarity=0.016 Sum_probs=146.4
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 008925 74 CSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEE 153 (548)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (548)
..+.|+++.+..+...+...-+. .-..|..+...+ .....++...++.+... .+.....-...+..+.+.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~---~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPT---LPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHhCCCHHH
Confidence 34567787777776665432111 111233332222 12245555555554422 22223334555566667777776
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHH
Q 008925 154 AWNVVYKMVASGIQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMED--AMRFLYRM 231 (548)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~ 231 (548)
.+.++.. .+.+...-.....+....|+..+|....+.+=..+.. .+..+..++..+.+.|.... ...=++.+
T Consensus 91 ~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~a 164 (618)
T 1qsa_A 91 LLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRLA 164 (618)
T ss_dssp HHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 6664443 1334444445666677778877776666655444322 34455555555554443222 22222222
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 008925 232 KELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDV-VTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDI 310 (548)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 310 (548)
...|+...|..+...+ .++. .....++..... ...+...... . .++.
T Consensus 165 -------------------l~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~---p~~~~~~~~~---~--~~~~ 212 (618)
T 1qsa_A 165 -------------------MKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFART---T--GATD 212 (618)
T ss_dssp -------------------HHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHHH---S--CCCH
T ss_pred -------------------HHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhC---hHhHHHHHhc---c--CCCh
Confidence 2233333333332211 1121 111222222111 1222211111 1 2222
Q ss_pred H---HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHH
Q 008925 311 H---VFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVM----FTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTY 383 (548)
Q Consensus 311 ~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 383 (548)
. .+..-+.-+.+ .+++.|...+....+.. ..+... +..++......+...++...+.+.... .++....
T Consensus 213 ~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 288 (618)
T 1qsa_A 213 FTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLI 288 (618)
T ss_dssp HHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHH
T ss_pred hhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHH
Confidence 2 11111222222 36777777777665422 122221 222333333444344555555554442 2343333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008925 384 ETLLWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSAEE 443 (548)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (548)
.-.+....+.|+++.|...|+.|..... .......=++.++...|+.++|..+++++..
T Consensus 289 e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 289 ERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3344444566788888887777654211 1222233345666777888888887777654
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.32 E-value=15 Score=39.89 Aligned_cols=147 Identities=12% Similarity=0.008 Sum_probs=101.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CC--------------
Q 008925 280 TIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKY----GV-------------- 341 (548)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-------------- 341 (548)
.++..+...+..+.+.++..-. +.++...-.++.+|...|++++|...|++.-.. +.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3455566667776665543321 445555567788999999999999999876311 00
Q ss_pred ----CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 008925 342 ----HPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL----KTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP 413 (548)
Q Consensus 342 ----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 413 (548)
..-..-|..++..+.+.+.++.++++-+.+++..-+.+. ..|..+.+.+...|++++|...+-.+.... -
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--L 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--H
Confidence 001123567788888899999999998888875322222 247788999999999999999998877543 3
Q ss_pred CHHHHHHHHHHHHHcCCHHH
Q 008925 414 KKSTIQLVADSWRAIGLARE 433 (548)
Q Consensus 414 ~~~~~~~l~~~~~~~g~~~~ 433 (548)
-...+..++..++..|..++
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 35677778877777776554
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.82 E-value=7.7 Score=29.66 Aligned_cols=72 Identities=8% Similarity=0.005 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHhccCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008925 342 HPNVVMFTTVISGWCNAVK---MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK 415 (548)
Q Consensus 342 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 415 (548)
.|+..+-..+..++.+..+ ..+++.+++.....+........-.|.-++.+.|++++|.++.+.+++. .|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 4566666666666665443 5567778887776531123345556777888888888888888888873 5653
No 253
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.80 E-value=23 Score=35.18 Aligned_cols=52 Identities=6% Similarity=-0.209 Sum_probs=36.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 387 LWGYGEAKQPWRAEELLQVMEEKGVRPKKSTIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
+..+...|....|...|..+.+. .+......++......|.++.++....+.
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 45567788888898888887753 33444455666777888888887666543
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.62 E-value=19 Score=34.09 Aligned_cols=94 Identities=11% Similarity=0.061 Sum_probs=51.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHH
Q 008925 139 NILVRAWCSKNSIEEAWNVVYKMVASGIQP-D----AVTYNTLARAYAQYGETYRAEQMLFEMQN----NQVRPN--ERT 207 (548)
Q Consensus 139 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~ 207 (548)
..|...+...|++.+|.+++..+...-... + ...+...++.|...+++.+|..+++++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 445566666677777766666654321111 1 23445556667777777777776666532 111111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 208 CGIIVSGYCKEGNMEDAMRFLYRMK 232 (548)
Q Consensus 208 ~~~l~~~~~~~g~~~~A~~~~~~~~ 232 (548)
+...+..+...+++.+|-+.|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4445556666677777766666554
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.51 E-value=3.1 Score=29.46 Aligned_cols=62 Identities=18% Similarity=0.358 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008925 45 FKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIK 107 (548)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 107 (548)
.=+..+-++.+....+-|++.+..+.+.+|.+.+++..|.++|+-++..- .....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 33555666666666677777777777777777777777777777776541 223344555543
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.67 E-value=5.8 Score=34.20 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=35.7
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 008925 38 ALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS 93 (548)
Q Consensus 38 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (548)
.+.+.|+++.+++....-++.. |-|...-..|+..++-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455666777776666666653 556666666777777777777777766666554
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.92 E-value=8.4 Score=27.31 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
..+-++.+....+-|++....+.+++|.+.+++.-|+++|+-.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444443
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.58 E-value=23 Score=30.55 Aligned_cols=118 Identities=13% Similarity=0.061 Sum_probs=65.7
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCC
Q 008925 320 YVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNL----KTYETLLWGYGEAKQ 395 (548)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~ 395 (548)
..+.|++++|+.....-++.. +-|...-..++..+|-.|+++.|.+-++...+. .|+. ..|..++.+-.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE~---- 79 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQ---- 79 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHH----
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHHH----
Confidence 445666777776666655543 234555566666777777777777777766664 2332 23333333211
Q ss_pred hHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhccCCCCC
Q 008925 396 PWRAEELLQVMEEKGVR-----PKKSTIQLVADSW--RAIGLAREAKRVLKSAEEDRQSMPN 450 (548)
Q Consensus 396 ~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~ 450 (548)
.=.+...-+-. ........++.++ ...|+.++|..+-.++.+..|.+++
T Consensus 80 ------~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 ------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ------HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ------HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11111111111 2233444555554 4569999999999998877766664
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.58 E-value=15 Score=27.69 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=19.1
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 367 IYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
-++.+...++-|++......+++|.+.+++.-|+++|+-.+
T Consensus 75 glN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 75 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.19 E-value=11 Score=35.63 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=50.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhhCC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHH--HH
Q 008925 101 TYNTLIKGYGNVGKPEESLKLLQLMSQDK-NVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVAS---GIQPDAVT--YN 174 (548)
Q Consensus 101 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~--~~ 174 (548)
+...+...|.+.|++++|.+.|.++.... +...-...+...++.+...+++..+...+.++... +-.++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 44556666666666666666666664421 11222445556666666666666666666665322 21121111 01
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 008925 175 TLARAYAQYGETYRAEQMLFEMQN 198 (548)
Q Consensus 175 ~l~~~~~~~g~~~~a~~~~~~~~~ 198 (548)
.-+..+...+++..|.+.|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223456677777666665544
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.87 E-value=31 Score=30.95 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 008925 308 PDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAV 359 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 359 (548)
-|+.....+...|.+.+++.+|...|= . |-.+....+..++.-+...+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhc
Confidence 466777778888888888888877762 2 22333456655555444433
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.60 E-value=13 Score=26.25 Aligned_cols=78 Identities=15% Similarity=0.046 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 008925 79 NVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVV 158 (548)
Q Consensus 79 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 158 (548)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+.. ..||...|.+|.. .+.|..+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 45566666666555431 1111222234455667777776655444 2466666655543 3566666666666
Q ss_pred HHHHHCC
Q 008925 159 YKMVASG 165 (548)
Q Consensus 159 ~~~~~~~ 165 (548)
..+-.+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 6666554
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.31 E-value=22 Score=33.47 Aligned_cols=98 Identities=12% Similarity=0.032 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHH--
Q 008925 136 RTYNILVRAWCSKNSIEEAWNVVYKMVASGIQ--PDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQ-VRPNERTCGI-- 210 (548)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~-- 210 (548)
.+...++..|.+.|++++|.+.|.++...-.. .-...+-.+++.+...+++..+...+.++.... -.++....+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35667788888888888888888887764222 224566677778888888888887777764321 0112221111
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHHh
Q 008925 211 --IVSGYCKEGNMEDAMRFLYRMKE 233 (548)
Q Consensus 211 --l~~~~~~~g~~~~A~~~~~~~~~ 233 (548)
-+..+...+++..|...|-++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 12223446677777666665543
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.07 E-value=13 Score=26.19 Aligned_cols=78 Identities=13% Similarity=0.020 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 008925 79 NVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVV 158 (548)
Q Consensus 79 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 158 (548)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+... .||...|.+|... +.|..+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHH--hcccHHHHHHHH
Confidence 44555555555544321 11111122334555666666665554442 4555555555432 445555555555
Q ss_pred HHHHHCC
Q 008925 159 YKMVASG 165 (548)
Q Consensus 159 ~~~~~~~ 165 (548)
..+-.+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 5555444
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.57 E-value=33 Score=30.48 Aligned_cols=81 Identities=11% Similarity=0.211 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CChHHHHHHHHHHHHcCCCCCHHHHH
Q 008925 308 PDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNA---VKMQRAMSIYEKMCEIGINPNLKTYE 384 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~ 384 (548)
-|+.....+...|.+.|++.+|...|-. |-.-+...+..++.-+... |...++--+.-++
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra------------- 194 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL------------- 194 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------------
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH-------------
Confidence 4677778888888888888887776531 1111344555444444333 4333322221111
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 008925 385 TLLWGYGEAKQPWRAEELLQVME 407 (548)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~ 407 (548)
+ --|.-.|+...|..+++...
T Consensus 195 -V-L~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 -V-FNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp -H-HHHHHTTBHHHHHHHHHHHH
T ss_pred -H-HHHHHhcCHHHHHHHHHHHH
Confidence 1 12334567777777776654
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.80 E-value=19 Score=27.17 Aligned_cols=59 Identities=8% Similarity=0.229 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008925 258 GVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILA 317 (548)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 317 (548)
+..+-++.+....+-|++......+.+|.+.+++..|..+++-+...- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 445555555556666777777777777777777777777777666432 23333444443
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.70 E-value=18 Score=29.57 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 008925 361 MQRAMSIYEKMCEIGINPN-LKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRP 413 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 413 (548)
..++..+|..|...|+--. ..-|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555555443322 2334455555555555555555555555544444
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.56 E-value=40 Score=30.27 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHH
Q 008925 239 NLVVFNSLIKGFLDIKDSDGVDKAL 263 (548)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~ 263 (548)
++.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4455555666666666655555544
No 269
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.91 E-value=31 Score=28.26 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 008925 308 PDIHVFSILAKGYVRAGE 325 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~ 325 (548)
++..+-...+.++.+.++
T Consensus 93 ~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344444444444444444
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.93 E-value=21 Score=25.21 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 008925 43 KRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLL 122 (548)
Q Consensus 43 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 122 (548)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+... .||...|..|.. .+.|..+++..-+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345555555555554431 11111112234556666666666555442 456666555443 2455556665555
Q ss_pred HHhhh
Q 008925 123 QLMSQ 127 (548)
Q Consensus 123 ~~~~~ 127 (548)
.++..
T Consensus 92 ~~la~ 96 (115)
T 2uwj_G 92 AGLGG 96 (115)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 45443
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.87 E-value=22 Score=25.10 Aligned_cols=78 Identities=10% Similarity=0.110 Sum_probs=42.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 008925 42 QKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKL 121 (548)
Q Consensus 42 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 121 (548)
....++|..+-+.+...+. ...+--.-+..+...|++++|..+.+... .||...|..|... +.|..+++..-
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHH
Confidence 3455666666666655432 11121122234566777777776666543 4666666555433 45666666666
Q ss_pred HHHhhh
Q 008925 122 LQLMSQ 127 (548)
Q Consensus 122 ~~~~~~ 127 (548)
+.++..
T Consensus 92 L~~la~ 97 (116)
T 2p58_C 92 LNRLAR 97 (116)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 655543
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=72.67 E-value=60 Score=30.02 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 008925 66 LFNAMINACSESGNVDEAMKIFQKM 90 (548)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~ 90 (548)
....|...|.+.|+.++..+++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555556555555555544
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=70.08 E-value=36 Score=26.38 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008925 398 RAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 398 ~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (548)
++.++|+.|...|+-.... .|...+..+...|++++|.++++.-.+.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3777777777777655544 6777777777888888888888776544
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.80 E-value=49 Score=27.04 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008925 148 KNSIEEAWNVVYKMVASGIQPD-AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP 203 (548)
Q Consensus 148 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 203 (548)
.+...++..+|..|...|+-.. +.-|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3445677777777776655433 4456666666777777777777777766665554
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.54 E-value=55 Score=25.75 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=21.9
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008925 399 AEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAE 442 (548)
Q Consensus 399 A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (548)
+.++|+.|...|+-.... .|...+..+-..|++.+|.++++...
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi 123 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 123 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555544443322 44455555555555555555555544
No 276
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=62.11 E-value=44 Score=26.44 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=49.2
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCh
Q 008925 319 GYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGIN--PNLKTYETLLWGYGEAKQP 396 (548)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 396 (548)
++.-.|.+..++-++...- ..+..-|.. -+|-+..++..|+..++.+++-.+. ||...
T Consensus 42 ~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~-------------- 101 (242)
T 3kae_A 42 VLYLNGEYTRALFHLHKLN----TCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDA-------------- 101 (242)
T ss_dssp HHHHTTCHHHHHHHHHTCC----BHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH--------------
T ss_pred hhhhcchHhHHHHHHHhcc----hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCccccc--------------
Confidence 3445677777766554321 011112222 2455677788888888887754332 22110
Q ss_pred HHHHHHHHHHHHCCCC-CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008925 397 WRAEELLQVMEEKGVR-PKKS-TIQLVADSWRAIGLAREAKRVLKSAEED 444 (548)
Q Consensus 397 ~~A~~~~~~~~~~~~~-p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (548)
- ++.|. +. -|.+ .+..++..|...|+.+||++.+...-..
T Consensus 102 --~---~~~ff---vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 102 --R---IQEMF---VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp --H---HHTTS---CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --c---cceee---eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 0 00010 11 2333 3445566677777777777777665433
No 277
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=61.76 E-value=87 Score=27.81 Aligned_cols=135 Identities=13% Similarity=0.070 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH---
Q 008925 10 PHEAHYIFNCLIEEGHRPT-LITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMK--- 85 (548)
Q Consensus 10 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--- 85 (548)
.++.+.-++.-++.|--=. -..|.++..-|.+++++++|++++..- ...+.+.|+...|-+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHH
Confidence 4444444444444431101 124555666666667777777665432 123344566555444
Q ss_pred -HHHHHHhcCCCCCHHHHHHHHHHHhccCChH-HHHHHHHHhh----hCCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 008925 86 -IFQKMKDSGCKPTTSTYNTLIKGYGNVGKPE-ESLKLLQLMS----QDKN-VKPNDRTYNILVRAWCSKNSIEEAWNVV 158 (548)
Q Consensus 86 -~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 158 (548)
+.+.+.+.+.+++......++..+......+ .=.++++.+. +.++ ..-++.....+...|.+.+++.+|...|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 3444555677777777777777665533211 1112222222 1111 2235666677777777777777776655
Q ss_pred H
Q 008925 159 Y 159 (548)
Q Consensus 159 ~ 159 (548)
-
T Consensus 158 i 158 (312)
T 2wpv_A 158 M 158 (312)
T ss_dssp H
T ss_pred H
Confidence 3
No 278
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.27 E-value=1.3e+02 Score=29.00 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCH--HH-HHHHHHHHhccCChHHHHHHHHHhhh
Q 008925 64 SILFNAMINACSESGNVDEAMKIFQKMKDSGC-KPTT--ST-YNTLIKGYGNVGKPEESLKLLQLMSQ 127 (548)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 127 (548)
...++.++..|...+.++.|..+..+..-... .++. .. +-.+...+.-.+++.+|.+.+....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44555666666666666666666665531100 0111 11 12344555556666666666655544
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=53.71 E-value=72 Score=26.95 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=47.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 008925 35 LVAALTRQKRFKSILSLISKVEKD--GMKP----DSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKG 108 (548)
Q Consensus 35 l~~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (548)
-+..+....+|++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 356777888999998888876532 1221 111222223332332223333344444422 3445555566677
Q ss_pred HhccCChHHHHHHHHHhh
Q 008925 109 YGNVGKPEESLKLLQLMS 126 (548)
Q Consensus 109 ~~~~g~~~~A~~~~~~~~ 126 (548)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777776553
No 280
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=52.90 E-value=89 Score=25.14 Aligned_cols=92 Identities=15% Similarity=0.028 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008925 308 PDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLL 387 (548)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 387 (548)
++..+-...+.++...++.+ +...+..+.. .++...-...+.++...++. ++...+..+.. .++..+-...+
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~ 159 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 159 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 45555555555555555543 2333333332 24444444445555544442 23333333333 34555555555
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 008925 388 WGYGEAKQPWRAEELLQVMEE 408 (548)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~ 408 (548)
.++...|. .++...+..+.+
T Consensus 160 ~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 160 DALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHHh
Confidence 55555554 334444444443
No 281
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.47 E-value=76 Score=26.44 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008925 397 WRAEELLQVMEEKGVRPKKS-TIQLVADSWRAIGLAREAKRVLKSAEEDR 445 (548)
Q Consensus 397 ~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (548)
+.+..+|..|...||--... .|..++..+...|++++|..+|+.-.+..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34666777777666655443 66666777777777777777777665443
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.17 E-value=87 Score=24.25 Aligned_cols=50 Identities=22% Similarity=0.168 Sum_probs=26.4
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008925 154 AWNVVYKMVASGIQPD-AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP 203 (548)
Q Consensus 154 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 203 (548)
+.++|..|...|+-.. +.-|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5555555555544332 3344555555555566666666665555554443
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.13 E-value=51 Score=27.84 Aligned_cols=88 Identities=10% Similarity=0.093 Sum_probs=54.7
Q ss_pred ccccccCChhhHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008925 2 NILVGKGKPHEAHYIFNCLIEE--GHRP----TLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACS 75 (548)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (548)
+.++.+.++++|+.+.++..+. +.++ ........+..-.....-.-+..+.+.+ .. .++.......+..+.
T Consensus 26 Dv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L~ 102 (235)
T 2d2s_A 26 DIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENMI 102 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHHH
Confidence 4677889999999999987652 2221 1112222333333333334444444555 32 456667777888999
Q ss_pred hcCChHHHHHHHHHHHh
Q 008925 76 ESGNVDEAMKIFQKMKD 92 (548)
Q Consensus 76 ~~g~~~~A~~~~~~~~~ 92 (548)
+.|+.++|.++|=+...
T Consensus 103 rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 103 KLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHHH
Confidence 99999999999877654
No 284
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=48.87 E-value=1.1e+02 Score=24.90 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 008925 62 PDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNIL 141 (548)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 141 (548)
++...-...+..+.+.|+. .+...+..+.. .++...-...+.++...+..+ +...+..+.. .++...-...
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----~~~~~vr~~a 101 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK----DEDGWVRQSA 101 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc----CCCHHHHHHH
Confidence 3444444444455554442 22222223332 234444444555555555432 2233333322 2344444444
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008925 142 VRAWCSKNSIEEAWNVVYKMVASGIQPDAVTYNTLARAYAQYGE 185 (548)
Q Consensus 142 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 185 (548)
+.++...++.+ +...+.++.. .++..+-...+.++...|.
T Consensus 102 ~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 102 AVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCC
Confidence 44444444432 2333333332 2444444444444444444
No 285
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=48.85 E-value=1.7e+02 Score=27.10 Aligned_cols=92 Identities=12% Similarity=0.111 Sum_probs=47.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHH--
Q 008925 140 ILVRAWCSKNSIEEAWNVVYKMVASGIQPD-----AVTYNTLARAYAQYGETYRAEQMLFEMQNN--QVRPNERTCGI-- 210 (548)
Q Consensus 140 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~-- 210 (548)
-++..|...|++.+|.+++.++.+.=-..| ..++..-++.|...+++.++...+...... .+.+++.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 455556666666666666655544210111 223444556666777777777766655432 12123322221
Q ss_pred --HHHHHH-hcCCHHHHHHHHHHH
Q 008925 211 --IVSGYC-KEGNMEDAMRFLYRM 231 (548)
Q Consensus 211 --l~~~~~-~~g~~~~A~~~~~~~ 231 (548)
-+..+. ..++|..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 123445 677777777766655
No 286
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=45.78 E-value=1.3e+02 Score=24.87 Aligned_cols=23 Identities=9% Similarity=0.209 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH
Q 008925 43 KRFKSILSLISKVEKDGMKPDSI 65 (548)
Q Consensus 43 g~~~~a~~~~~~~~~~~~~~~~~ 65 (548)
++|.+.+++++.+...+......
T Consensus 33 ~dFrq~rdi~eall~~~l~~~~~ 55 (235)
T 3bu8_A 33 GDFRQIRDIMQALLVRPLGKEHT 55 (235)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCHH
T ss_pred HHHHHHHHHHHHHHhCccccccc
Confidence 34555666666665555554433
No 287
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.24 E-value=1.7e+02 Score=30.97 Aligned_cols=131 Identities=15% Similarity=0.062 Sum_probs=70.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 008925 281 IMDAWSSAGLMGKCQEIFDDMVKAGIEPDIHVFSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVK 360 (548)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 360 (548)
++..|...+..+-+.++..- .+.++..-..++.+|...|++++|...|+++-. |+..+..... .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~----------~ 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA----------V 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCG----------G
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCccccc----------c
Confidence 44555666666654443211 244555445677788888888888888876532 2221110000 0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcC
Q 008925 361 MQRAMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVMEEKGVRPKK----STIQLVADSWRAIG 429 (548)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g 429 (548)
.+....++.. .+.. ......|..++..+-+.+-++-++++-+.+++.--.-|. ..|..+.++.+..|
T Consensus 880 ~~~~~~ll~~-~e~~-~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEK-YHHQ-NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHH-TTTC-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCc-cccc-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0011111110 0100 112246888889999999999999999888864212222 24556666665554
No 288
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=41.57 E-value=1.5e+02 Score=24.47 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhhhCCCCCCCH-HHH-----HHHHHHHHhCCCHHHHHHHHHHHHH
Q 008925 115 PEESLKLLQLMSQDKNVKPND-RTY-----NILVRAWCSKNSIEEAWNVVYKMVA 163 (548)
Q Consensus 115 ~~~A~~~~~~~~~~~~~~~~~-~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~ 163 (548)
++.|+.+++.+.....++.+. ... -..+..|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 456666666665543211111 011 1222345555666666666655544
No 289
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.28 E-value=1.3e+02 Score=23.66 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=28.9
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008925 154 AWNVVYKMVASGIQPD-AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP 203 (548)
Q Consensus 154 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 203 (548)
...+|..|...|+-.. +.-|......+-..|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4455666666554433 3445555566666666666666666666655444
No 290
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=38.30 E-value=2.5e+02 Score=26.56 Aligned_cols=135 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 008925 86 IFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNSIEEAWNVVYKMVASG 165 (548)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 165 (548)
.+.-+.+.|++--...|..-...+...|++++|-++--..++. +-.+..+.+.+-..-...|+..--+.+|..+++.|
T Consensus 348 A~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g--iLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 348 ALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG--ILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG--SSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc--cccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008925 166 IQPDAVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNERTCGIIVSGYCKEGNMEDAMRFLYRM 231 (548)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 231 (548)
..+..--..+++.-...|+.+-.++.+.+ +..+++-=+.-..+..+..-|..+|.+.
T Consensus 426 -~Ln~~ESlEl~r~vL~q~r~~llekWl~e--------~KL~~SEeLGDlvk~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 426 -QLNKYESLELCRPVLQQGRKQLLEKWLKE--------DKLECSEELGDLVKSVDPTLALSVYLRA 482 (494)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHH--------TCSCCCHHHHHHHHHHCSHHHHHHHHHH
T ss_pred -ccchHHhhHHhHHHHhccHHHHHHHHHhc--------CCccccHHhHhhhhhcCHHHHHHHHHHc
No 291
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.75 E-value=1.8e+02 Score=24.25 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008925 153 EAWNVVYKMVASGIQPD-AVTYNTLARAYAQYGETYRAEQMLFEMQNNQVRP 203 (548)
Q Consensus 153 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 203 (548)
.+..+|..|...|+-.. +.-|......+...|++.+|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45566666666655433 4445566666666677777777776666554444
No 292
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.38 E-value=2.4e+02 Score=25.62 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008925 172 TYNTLARAYAQYGETYRAEQMLFEMQ 197 (548)
Q Consensus 172 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 197 (548)
....++.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 34567777888888888888887764
No 293
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.89 E-value=2.9e+02 Score=26.55 Aligned_cols=65 Identities=9% Similarity=0.126 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhhhCCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008925 100 STYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPN---DRTYNILVRAWCSKNSIEEAWNVVYKMVAS 164 (548)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 164 (548)
..++.+++.|...+.++.|..+..+..--....++ ...+..+++.+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45666777777777777777777665310000011 111223445556666777776666666543
No 294
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.67 E-value=3.3e+02 Score=28.80 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC
Q 008925 172 TYNTLARAYAQYGETYRAEQMLFEMQNNQVRPNE----RTCGIIVSGYCKEG 219 (548)
Q Consensus 172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 219 (548)
-|..++..+-+.+.++-+.++-+..++.-...|. ..+..+..+.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 4677888888888888888888877764322233 24555666655544
No 295
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.48 E-value=28 Score=21.74 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008925 10 PHEAHYIFNCLIEEGHRPTLITYTTLVAAL 39 (548)
Q Consensus 10 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 39 (548)
.++|.+.|.+|++..--++..+|...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 356777777776654334555666666666
No 296
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.23 E-value=80 Score=24.72 Aligned_cols=61 Identities=11% Similarity=0.068 Sum_probs=44.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCChHHHHHHHHHHHh
Q 008925 31 TYTTLVAALTRQKRFKSILSLISKVEKDGMKP--DSILFNAMIN-A-----CSESGNVDEAMKIFQKMKD 92 (548)
Q Consensus 31 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 92 (548)
+|...+..+-. |+|-+|-++++.+=.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45556666666 89999999999986654444 4556777776 2 3457999999999998865
No 297
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.41 E-value=1.7e+02 Score=22.43 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=32.5
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 008925 55 VEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGK 114 (548)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 114 (548)
+.+.|..++. .-..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 4445554443 3344555555555666777777777666545555555555555655553
No 298
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.87 E-value=1e+02 Score=24.12 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=39.7
Q ss_pred HHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHhccCCh
Q 008925 47 SILSLISK-VEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDS--GCKPTTSTYNTLIKGYGNVGKP 115 (548)
Q Consensus 47 ~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 115 (548)
.+++-+.+ +.+.|...+.. -..++..+...++.-.|.++++.+.+. +...+..|.-.-+..+...|-+
T Consensus 15 ~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 33433333 34456665543 445556666666677777777777665 5455666655566666666643
No 299
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=31.74 E-value=1.3e+02 Score=21.03 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHHHHHH
Q 008925 364 AMSIYEKMCEIGINPNLKTYETLLWGYGEAKQPWRAEELLQVME-----EKGVRPKKSTIQL 420 (548)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~ 420 (548)
|.++.++....|+.|+..+...++..|...+- + +.++.++.. ..|..|+...+..
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~ 87 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNS 87 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 45566666666777777776766666665553 1 333333321 3455666665544
No 300
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.12 E-value=1.9e+02 Score=22.61 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CHHHHHHHHH-H-----HhccCChHHHHHHHHHhhh
Q 008925 67 FNAMINACSESGNVDEAMKIFQKMKDSGCKP--TTSTYNTLIK-G-----YGNVGKPEESLKLLQLMSQ 127 (548)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 127 (548)
|..-+.. ...|++-+|.++|+.+=.....+ ....|..||+ + ..+.|+..-|..++.+...
T Consensus 36 ~~~~i~l-Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRL-YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHH-HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3333333 34599999999999986543344 4566777777 2 3457999999999988765
No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.91 E-value=1.7e+02 Score=22.15 Aligned_cols=59 Identities=12% Similarity=0.141 Sum_probs=33.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 008925 55 VEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGK 114 (548)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 114 (548)
+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 44556555543 333444555555566677777777666544555555555555555553
No 302
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.64 E-value=3.4e+02 Score=25.47 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=37.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh-----hHHHHHHHHHHcCCC
Q 008925 217 KEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSD-----GVDKALTLMEEFGVK 272 (548)
Q Consensus 217 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~a~~~~~~~~~~~~~ 272 (548)
+..+.+.|+.++.+|.+.|..|....-..+..+.-.-|.-+ .|...++.....|.+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 45788899999999988886666666666666665555322 355566666666643
No 303
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.27 E-value=1.4e+02 Score=22.71 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=29.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 008925 55 VEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVG 113 (548)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (548)
+.+.|+.++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34455555543 233344444444 5566666666666554445555444455555544
No 304
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.19 E-value=1.7e+02 Score=21.85 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=29.4
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 008925 55 VEKDGMKPDSILFNAMINACSESG-NVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVG 113 (548)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (548)
+.+.|..++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555443 233444444444 55566666666666554445555444455555444
No 305
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.63 E-value=1.8e+02 Score=22.26 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=29.0
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 008925 55 VEKDGMKPDSILFNAMINACSESG-NVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVG 113 (548)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (548)
+.+.|+.++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34455554433 223344444444 45566666666665544445555444555555554
No 306
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=27.95 E-value=1.1e+02 Score=19.61 Aligned_cols=43 Identities=9% Similarity=0.080 Sum_probs=22.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 349 TTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
+.++..++...-.++++-.+.++++.| ..+..+|.--++.+++
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344444444444556666666666555 4455555544444443
No 307
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.32 E-value=2.5e+02 Score=22.81 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=11.0
Q ss_pred HHHhccCChHHHHHHHHHhh
Q 008925 107 KGYGNVGKPEESLKLLQLMS 126 (548)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~~~ 126 (548)
..|.+.|.+++|.++|++..
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHccchHHHHHHHHHHh
Confidence 34555555666665555543
No 308
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=27.15 E-value=4.8e+02 Score=26.06 Aligned_cols=80 Identities=10% Similarity=0.005 Sum_probs=37.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH---h
Q 008925 211 IVSGYCKEGNMEDAMRFLYRMKELEVHPNLVVFNSLIKGFLDIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWS---S 287 (548)
Q Consensus 211 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~ 287 (548)
...++.-.|+++.|++++-.. ...+.+.+...+.- .|-... -..+......-....+..|+..|. +
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~---~gLL~~----~~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLAS---LKLFKI----DSSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHH---TTC---------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHH---cCCccC----CCcccccCCCcccccHHHHHHHHHHHhh
Confidence 344455679999999987654 12333333333322 222221 111111110101233566777775 4
Q ss_pred CCChhHHHHHHHHH
Q 008925 288 AGLMGKCQEIFDDM 301 (548)
Q Consensus 288 ~~~~~~a~~~~~~~ 301 (548)
..+...|.++|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 56888888887766
No 309
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.05 E-value=1.1e+02 Score=21.17 Aligned_cols=25 Identities=28% Similarity=0.127 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 008925 417 TIQLVADSWRAIGLAREAKRVLKSA 441 (548)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~~~ 441 (548)
.+...++.+.+.|++++|++..+++
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3445677888888888888877764
No 310
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.73 E-value=2.1e+02 Score=22.26 Aligned_cols=22 Identities=0% Similarity=0.070 Sum_probs=9.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHH
Q 008925 282 MDAWSSAGLMGKCQEIFDDMVK 303 (548)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~ 303 (548)
+..+...+..-.|.++++.+.+
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~ 60 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQ 60 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHh
Confidence 3333333344444444444443
No 311
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.18 E-value=2.7e+02 Score=22.71 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=9.2
Q ss_pred cCCHhHHHHHHHHHHhCC
Q 008925 323 AGEPQKAESILTSMRKYG 340 (548)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~ 340 (548)
..+++.|+-++.+|++.|
T Consensus 27 GSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG 44 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 344555555555555544
No 312
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=26.17 E-value=1.7e+02 Score=20.50 Aligned_cols=31 Identities=6% Similarity=0.182 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 008925 329 AESILTSMRKYGVHPNVVMFTTVISGWCNAV 359 (548)
Q Consensus 329 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 359 (548)
|..+.+++...|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4555555555566666665565655555444
No 313
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.00 E-value=3.7e+02 Score=24.34 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 008925 66 LFNAMINACSESGNVDEAMKIFQKMK 91 (548)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 91 (548)
....++.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 34556677777788888888877764
No 314
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=25.01 E-value=2.6e+02 Score=22.18 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 008925 46 KSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCK 96 (548)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 96 (548)
+.+..+++.+.+.|+-.|...-...+....+.|.+ ....+-.++.+.|+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 44555666666666554444444445444443322 224445555666653
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.78 E-value=2.3e+02 Score=21.47 Aligned_cols=61 Identities=18% Similarity=0.088 Sum_probs=43.0
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008925 19 CLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV 80 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (548)
.+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 355667776654 3455666666677888999999998877666777776777777777643
No 316
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.55 E-value=80 Score=19.18 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=18.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHH
Q 008925 401 ELLQVMEEKGVRPKKSTIQLVADSWRAIGL--AREAKRVLKSA 441 (548)
Q Consensus 401 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~ 441 (548)
+.++.+++.|+.++. .-.++...|. ++.|.+++++|
T Consensus 11 qmlq~L~eMGFd~er-----ae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCDQEM-----AGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCCHHH-----HHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHH-----HHHHHHHhCcccHHHHHHHHHHh
Confidence 334555555554432 2234445555 66677766665
No 317
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=23.28 E-value=4.7e+02 Score=24.55 Aligned_cols=55 Identities=16% Similarity=0.050 Sum_probs=34.6
Q ss_pred cCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-----hhHHHHHHHHHHHcCC
Q 008925 252 DIKDSDGVDKALTLMEEFGVKPDVVTFSTIMDAWSSAGL-----MGKCQEIFDDMVKAGI 306 (548)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 306 (548)
+.++.+.|...+..|.+.|..|....-..+..++..-|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 346788888888888888766655555555555555553 2345555666666663
No 318
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.20 E-value=2.4e+02 Score=21.07 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=41.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008925 20 LIEEGHRPTLITYTTLVAALTRQK-RFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV 80 (548)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (548)
+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 45567776654 345566666666 7788999999999887667777766667777776643
No 319
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=23.08 E-value=2.2e+02 Score=27.44 Aligned_cols=13 Identities=23% Similarity=0.003 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHCC
Q 008925 12 EAHYIFNCLIEEG 24 (548)
Q Consensus 12 ~A~~~~~~~~~~~ 24 (548)
+|.+.+..+...+
T Consensus 28 KA~E~L~~Ak~~~ 40 (525)
T 3i5p_A 28 RAIEHLRRAKEIG 40 (525)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcc
Confidence 4556666665543
No 320
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.72 E-value=3.1e+02 Score=22.27 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=13.5
Q ss_pred HcCCHhHHHHHHHHHHhCCCCC
Q 008925 322 RAGEPQKAESILTSMRKYGVHP 343 (548)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~p 343 (548)
+..+++.|+-.+.+|++.|-.|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCH
Confidence 3456666666666666665444
No 321
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.28 E-value=2.7e+02 Score=21.29 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=43.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008925 19 CLIEEGHRPTLITYTTLVAALTRQK-RFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV 80 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (548)
.+.+.|.+++.. -..++..+...+ +.-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 7 ~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 355677776654 344566666666 6788999999999887677777777777777777754
No 322
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.00 E-value=2.8e+02 Score=21.14 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=41.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008925 19 CLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNV 80 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 80 (548)
.+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34456766444 34556667767777889999999998877667777776777777777644
No 323
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=20.91 E-value=5.5e+02 Score=24.52 Aligned_cols=78 Identities=10% Similarity=-0.026 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008925 313 FSILAKGYVRAGEPQKAESILTSMRKYGVHPNVVMFTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE 392 (548)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (548)
...|+........++.|...|.++.... +-+...||.|+......|+.-+|.-.|-+.+... .|-..+..+|...+.+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Confidence 3445566666777889999999998853 3345689999888888899888988888888664 6788888888877754
No 324
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.69 E-value=1.7e+02 Score=22.59 Aligned_cols=84 Identities=7% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008925 348 FTTVISGWCNAVKMQRAMSIYEKMCEIGINPNLKTYETLLWGYGE--AKQPWRAEELLQVMEEKGVRPKKSTIQLVADSW 425 (548)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 425 (548)
...++.-|...|+.++|.+.++++..-. -....+...+..++-+ ....+....++..+...++-+.......+...+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl 90 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 90 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Q ss_pred HHcCCHH
Q 008925 426 RAIGLAR 432 (548)
Q Consensus 426 ~~~g~~~ 432 (548)
....++.
T Consensus 91 ~~ldDl~ 97 (152)
T 2ion_A 91 NEIPDIN 97 (152)
T ss_dssp HHHHHHH
T ss_pred HhChHhc
No 325
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.20 E-value=1.8e+02 Score=21.50 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=26.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 008925 69 AMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGK 114 (548)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 114 (548)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3444555555566677777777665544555555555566655553
Done!