BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008927
(548 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 147/483 (30%), Positives = 229/483 (47%), Gaps = 34/483 (7%)
Query: 69 TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
TAPYG+W+SP+ A +V+ S R G + W+ RP EAGR LV+ A +E
Sbjct: 4 TAPYGAWQSPIDAALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEES 62
Query: 129 SDITPKEYAVRTTAQEYGG----GAFR-IFGDTVIFSNYKDQRLYKHSIDSKDSS-PLPI 182
+ P + VR EY G G R G ++F+++ DQRLY D+ + P P+
Sbjct: 63 A--LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL 120
Query: 183 TP--DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE-IVAIALNGQNIQEPKVL 239
TP G L +AD + P + E+ + + + A+ L+G + +
Sbjct: 121 TPVSAVGGGL-RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179
Query: 240 VSGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAG 294
SD F PR+ P G + W+ W HP MPW+ EL ++E+G R + G
Sbjct: 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239
Query: 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354
+ I ++ +W+ G L TDR G+WNLH+ + + + EF+ PLW
Sbjct: 240 PEEAIAQA----EWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTP 294
Query: 355 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLF 414
G+ + + + LIA + G + LGILD L P+T+ TL
Sbjct: 295 GMRWFAPLAN----GLIAVVH-GKGAAVLGILDPESGELVDAAGPWTEW-AATLTVSGTR 348
Query: 415 VEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQK 474
G + ++ V LD +A + + + D + +Y+ P++ F T G++
Sbjct: 349 AVGVAASPRTAYEVVELDTVTGRA---RTIGARHTDPVD-PAYYPEPQIRTF-TAPDGRE 403
Query: 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
+A+ YPP +P + +E PP +V +HGGPTS +L+L + Y+TSRG DVNYGG
Sbjct: 404 IHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGG 463
Query: 535 STG 537
STG
Sbjct: 464 STG 466
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 147/483 (30%), Positives = 227/483 (46%), Gaps = 34/483 (7%)
Query: 69 TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
TAPYG+W+SP+ A +V+ S R G + W+ RP EAGR LV+ A +E
Sbjct: 4 TAPYGAWQSPIDAALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEES 62
Query: 129 SDITPKEYAVRTTAQEYGG----GAFR-IFGDTVIFSNYKDQRLYKHSIDSKDSS-PLPI 182
+ P + VR EY G G R G ++F+++ DQRLY D+ + P P+
Sbjct: 63 A--LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL 120
Query: 183 TP--DYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239
TP G L +AD + P R + E + + + A+ L+G + +
Sbjct: 121 TPVSAVGGGL-RWADPVLLPERGEVWCXAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179
Query: 240 VSGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAG 294
SD F PR+ P G + W+ W HP PW+ EL ++E+G R + G
Sbjct: 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRXPWEGTELKTARVTEDGRFADTRTLLGG 239
Query: 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354
+ I ++ +W+ G L TDR G+WNLH+ + + + EF+ PLW
Sbjct: 240 PEEAIAQA----EWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTP 294
Query: 355 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLF 414
G + + + LIA + G + LGILD L P+T+ TL
Sbjct: 295 GXRWFAPLAN----GLIAVVH-GKGAAVLGILDPESGELVDAAGPWTEW-AATLTVSGTR 348
Query: 415 VEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQK 474
G + ++ V LD +A + + + D + +Y+ P++ F T G++
Sbjct: 349 AVGVAASPRTAYEVVELDTVTGRA---RTIGARHTDPVD-PAYYPEPQIRTF-TAPDGRE 403
Query: 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
+A+ YPP +P + +E PP +V +HGGPTS +L+L + Y+TSRG DVNYGG
Sbjct: 404 IHAHIYPPHSPDFTGPADELPPYVVXAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGG 463
Query: 535 STG 537
STG
Sbjct: 464 STG 466
>pdb|1X9N|A Chain A, Crystal Structure Of Human Dna Ligase I Bound To
5'-Adenylated, Nicked Dna
Length = 688
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 189 PLVSYADGIFDP------RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG 242
P+ A G+ D RF R++ VRED++ + ++ ++ + IQ + SG
Sbjct: 622 PIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSG 681
Query: 243 SD 244
SD
Sbjct: 682 SD 683
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,212,800
Number of Sequences: 62578
Number of extensions: 843189
Number of successful extensions: 1961
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1947
Number of HSP's gapped (non-prelim): 9
length of query: 548
length of database: 14,973,337
effective HSP length: 104
effective length of query: 444
effective length of database: 8,465,225
effective search space: 3758559900
effective search space used: 3758559900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)