BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008927
         (548 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9P778|DPP5_SCHPO Dipeptidyl-peptidase 5 OS=Schizosaccharomyces pombe (strain 972 /
           ATCC 24843) GN=SPBC1711.12 PE=3 SV=1
          Length = 683

 Score = 36.6 bits (83), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 188 EPLVSYADGIFDPRFNRYVTVREDRRQD-ALNSTTEIVAIALNGQNIQEPKVLVSGSDFY 246
           EP    +D  FD  +++ V V +D + + A  + T +  I LN +N+   K L +     
Sbjct: 217 EPFGGLSD--FDSNYDKLVFVAKDPKLNPATQTKTVVYEINLNTRNL---KSLSTAKGAC 271

Query: 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG 284
           + PR+   G  +AW+E   P    D+ ++ V Y SE+G
Sbjct: 272 SSPRLAKDGNHIAWLEMQTPQYESDQNQIMV-YESESG 308


>sp|A8LHQ6|TOLB_DINSH Protein TolB OS=Dinoroseobacter shibae (strain DFL 12) GN=tolB PE=3
           SV=1
          Length = 446

 Score = 35.4 bits (80), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 17/124 (13%)

Query: 283 NGDVYKRVCVAGFDPTIVESP---TEPKWSSKG-ELFFVTDRKNGFWNLHKWIESNNEVL 338
           N D+Y+R   +G    +  +P   T P +S  G ++ F +DR +G   L+    +  E  
Sbjct: 280 NSDIYRRDLSSGAQTRLTATPAIETAPSFSPDGRQIVFESDR-SGSQQLYVMSATGGEAR 338

Query: 339 AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398
            I      +  P+W                +LIA + +  GR ++G++   G    LL  
Sbjct: 339 RISFGPGRYGTPVW------------SPRGDLIAFTKQNQGRFHIGVMRTDGSEERLLTS 386

Query: 399 PFTD 402
            F D
Sbjct: 387 SFLD 390


>sp|B3CP06|TOLB_WOLPP Protein TolB OS=Wolbachia pipientis subsp. Culex pipiens (strain
           wPip) GN=tolB PE=3 SV=1
          Length = 418

 Score = 34.7 bits (78), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 16/127 (12%)

Query: 201 RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAW 260
            FN  +T   + +     S  +I  +  +G NI   K L +G  F + PR  P G+ + +
Sbjct: 147 HFNTKITYIAEEKDSNYKSVRKIAVMNQDGSNI---KYLTNGEKFVSTPRFSPNGKGIVY 203

Query: 261 IEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 320
           I + +      K+ + +  + +N +      ++ F+  I    + P++S  G+  F++  
Sbjct: 204 ISYTN-----GKSYIILKNLKDNTE----SIISAFEGVI----SAPRFSPDGKSLFISHS 250

Query: 321 KNGFWNL 327
            +G  N+
Sbjct: 251 LSGETNI 257


>sp|A5WGB3|RLMH_PSYWF Ribosomal RNA large subunit methyltransferase H OS=Psychrobacter
           sp. (strain PRwf-1) GN=rlmH PE=3 SV=1
          Length = 162

 Score = 34.7 bits (78), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 13/89 (14%)

Query: 367 EKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGND-CLFVEGASGVEPSS 425
           E   I  +++ N R  L +LD  G  LS   +     + + +G+D  L + GA GV P  
Sbjct: 59  EGKAILATHQSNSREKLWVLDVKGKMLSTEQLADKLSEAMQVGDDVALVIGGADGVSPEV 118

Query: 426 VAKVTLDDHKLKAVDFKVVWSSSPDTLKY 454
           +A          A DFK  WS SP TL +
Sbjct: 119 LA----------AADFK--WSLSPLTLPH 135


>sp|P34422|DPF6_CAEEL Dipeptidyl peptidase family member 6 OS=Caenorhabditis elegans
           GN=dpf-6 PE=3 SV=2
          Length = 740

 Score = 33.1 bits (74), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 11/92 (11%)

Query: 450 DTLKYKSYFSLPELIEF--PTEVP-GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT 506
           D +  ++Y SLP        ++VP G + YA     +  +  A P++   ++V  HGGP 
Sbjct: 389 DEMTIQAYLSLPPQAPLLKSSQVPDGDRPYA-----NLGMIPAVPQK---MIVLVHGGPK 440

Query: 507 SEARGILNLSIQYWTSRGWAFVDVNYGGSTGL 538
           +      +    + T+RG++ + VN+ GSTG 
Sbjct: 441 ARDHYGFSPMNAWLTNRGYSVLQVNFRGSTGF 472


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.134    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,154,300
Number of Sequences: 539616
Number of extensions: 10424665
Number of successful extensions: 22613
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 22603
Number of HSP's gapped (non-prelim): 24
length of query: 548
length of database: 191,569,459
effective HSP length: 123
effective length of query: 425
effective length of database: 125,196,691
effective search space: 53208593675
effective search space used: 53208593675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)