Query 008927
Match_columns 548
No_of_seqs 337 out of 2633
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 18:18:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1506 DAP2 Dipeptidyl aminop 100.0 5E-32 1.1E-36 296.5 40.6 414 77-547 2-446 (620)
2 PRK10115 protease 2; Provision 100.0 3.1E-30 6.6E-35 284.0 45.7 402 93-546 76-496 (686)
3 PRK01029 tolB translocation pr 99.9 4.2E-24 9.1E-29 224.2 29.5 266 89-399 137-413 (428)
4 PRK01029 tolB translocation pr 99.9 2.2E-22 4.7E-27 211.2 29.9 246 154-437 146-408 (428)
5 PRK05137 tolB translocation pr 99.9 1E-21 2.2E-26 207.8 30.3 242 154-436 165-416 (435)
6 PRK04043 tolB translocation pr 99.9 2.7E-21 5.9E-26 201.7 30.4 226 165-435 169-403 (419)
7 PRK05137 tolB translocation pr 99.9 2.1E-21 4.6E-26 205.4 29.6 251 99-399 165-422 (435)
8 PRK03629 tolB translocation pr 99.9 2.9E-21 6.3E-26 203.4 30.0 240 155-436 164-410 (429)
9 PRK03629 tolB translocation pr 99.9 4.4E-21 9.5E-26 202.0 30.8 250 99-398 163-415 (429)
10 PRK04792 tolB translocation pr 99.9 8.9E-21 1.9E-25 200.5 31.5 251 99-399 182-435 (448)
11 PRK04043 tolB translocation pr 99.9 4.1E-21 8.8E-26 200.4 28.4 246 100-398 155-409 (419)
12 PRK02889 tolB translocation pr 99.9 1.6E-20 3.5E-25 197.8 30.5 248 99-399 163-413 (427)
13 PRK04792 tolB translocation pr 99.9 2.3E-20 4.9E-25 197.4 30.6 239 155-435 183-428 (448)
14 PRK04922 tolB translocation pr 99.9 3.5E-20 7.6E-25 195.9 30.6 251 99-399 167-421 (433)
15 PRK00178 tolB translocation pr 99.9 3.5E-20 7.6E-25 196.1 30.7 251 99-399 162-416 (430)
16 PRK02889 tolB translocation pr 99.9 5.8E-20 1.3E-24 193.6 30.8 239 155-435 164-406 (427)
17 PRK00178 tolB translocation pr 99.9 4E-20 8.7E-25 195.6 29.7 240 154-435 162-409 (430)
18 PRK04922 tolB translocation pr 99.9 4.3E-20 9.4E-25 195.1 29.2 240 154-435 167-414 (433)
19 PRK01742 tolB translocation pr 99.8 1.9E-17 4.2E-22 174.7 29.7 243 99-398 168-413 (429)
20 PRK01742 tolB translocation pr 99.8 2.3E-17 5.1E-22 174.1 29.1 233 154-435 168-407 (429)
21 TIGR02800 propeller_TolB tol-p 99.8 3E-17 6.6E-22 173.0 29.8 250 99-399 155-407 (417)
22 TIGR02800 propeller_TolB tol-p 99.8 3.5E-17 7.7E-22 172.5 29.7 240 154-435 155-400 (417)
23 PF00930 DPPIV_N: Dipeptidyl p 99.8 5.3E-17 1.2E-21 166.9 22.8 256 152-438 2-322 (353)
24 COG0823 TolB Periplasmic compo 99.8 1.4E-16 3.1E-21 165.2 23.8 228 165-433 173-403 (425)
25 KOG2281 Dipeptidyl aminopeptid 99.7 5.6E-16 1.2E-20 158.9 25.0 173 368-548 515-700 (867)
26 PF00930 DPPIV_N: Dipeptidyl p 99.7 1.3E-15 2.9E-20 156.5 26.5 295 97-424 1-353 (353)
27 COG0823 TolB Periplasmic compo 99.7 1.2E-15 2.7E-20 158.2 23.5 241 101-391 159-404 (425)
28 KOG2100 Dipeptidyl aminopeptid 99.7 1.1E-14 2.4E-19 161.5 30.0 221 306-548 345-582 (755)
29 COG1770 PtrB Protease II [Amin 99.6 1.9E-12 4.1E-17 135.2 37.0 390 99-546 85-499 (682)
30 PF14583 Pectate_lyase22: Olig 99.6 1E-12 2.3E-17 131.2 26.0 303 89-432 36-383 (386)
31 KOG2237 Predicted serine prote 99.5 6.5E-11 1.4E-15 122.9 30.4 322 193-546 184-521 (712)
32 PF02897 Peptidase_S9_N: Proly 99.5 5.4E-11 1.2E-15 125.3 29.1 316 92-437 72-409 (414)
33 COG4946 Uncharacterized protei 99.5 2.8E-11 6.1E-16 120.3 24.7 281 80-423 217-513 (668)
34 COG4946 Uncharacterized protei 99.4 7.3E-11 1.6E-15 117.4 20.2 240 153-439 49-302 (668)
35 COG1505 Serine proteases of th 99.3 5.6E-11 1.2E-15 122.8 15.9 166 368-548 306-474 (648)
36 PF14583 Pectate_lyase22: Olig 99.2 3.6E-09 7.8E-14 106.1 23.0 274 126-439 21-335 (386)
37 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 2.5E-07 5.4E-12 92.1 31.6 243 148-436 36-283 (300)
38 PRK13616 lipoprotein LpqB; Pro 99.1 3.6E-08 7.7E-13 106.9 24.1 200 157-395 323-533 (591)
39 COG2706 3-carboxymuconate cycl 99.0 9.3E-07 2E-11 86.4 30.0 275 89-398 40-332 (346)
40 PRK13616 lipoprotein LpqB; Pro 98.9 2.7E-08 5.8E-13 107.9 17.4 165 147-338 354-532 (591)
41 PF10282 Lactonase: Lactonase, 98.9 5.5E-07 1.2E-11 92.4 26.3 279 89-397 37-332 (345)
42 TIGR03866 PQQ_ABC_repeats PQQ- 98.9 1.6E-06 3.5E-11 86.2 28.6 204 149-397 79-288 (300)
43 PRK11028 6-phosphogluconolacto 98.9 3.6E-06 7.8E-11 85.8 29.1 258 149-436 41-310 (330)
44 COG2706 3-carboxymuconate cycl 98.8 1.1E-05 2.4E-10 79.0 27.5 246 164-437 15-281 (346)
45 PF02897 Peptidase_S9_N: Proly 98.7 1.8E-05 3.8E-10 83.5 29.0 256 152-432 76-357 (414)
46 PRK11028 6-phosphogluconolacto 98.7 3.9E-05 8.5E-10 78.2 30.6 219 149-396 86-313 (330)
47 PF10282 Lactonase: Lactonase, 98.7 1.2E-05 2.5E-10 82.6 26.2 260 152-438 46-330 (345)
48 TIGR02658 TTQ_MADH_Hv methylam 98.7 6.3E-05 1.4E-09 76.2 30.8 253 149-436 52-334 (352)
49 KOG2055 WD40 repeat protein [G 98.5 1E-05 2.2E-10 81.2 20.3 199 90-331 215-417 (514)
50 PF08450 SGL: SMP-30/Gluconola 98.5 5.6E-05 1.2E-09 73.6 23.2 210 93-338 4-217 (246)
51 PF08662 eIF2A: Eukaryotic tra 98.5 1.1E-05 2.5E-10 75.4 17.3 138 149-317 12-161 (194)
52 PF08450 SGL: SMP-30/Gluconola 98.5 7.3E-05 1.6E-09 72.8 23.6 224 148-418 5-245 (246)
53 cd00200 WD40 WD40 domain, foun 98.4 0.00025 5.4E-09 68.7 26.8 243 88-393 9-253 (289)
54 KOG0318 WD40 repeat stress pro 98.4 0.00036 7.9E-09 71.4 26.2 199 97-337 27-269 (603)
55 cd00200 WD40 WD40 domain, foun 98.4 0.00063 1.4E-08 65.8 27.7 233 149-435 16-252 (289)
56 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00086 1.9E-08 68.1 28.5 103 165-285 27-139 (352)
57 PRK10115 protease 2; Provision 98.3 0.00055 1.2E-08 76.5 29.5 218 191-438 127-352 (686)
58 PF08662 eIF2A: Eukaryotic tra 98.3 7.9E-05 1.7E-09 69.7 19.2 152 193-376 8-163 (194)
59 PF02239 Cytochrom_D1: Cytochr 98.3 0.00032 7E-09 72.4 24.0 252 149-436 43-351 (369)
60 COG3386 Gluconolactonase [Carb 98.2 0.00058 1.3E-08 68.3 24.0 234 147-423 29-280 (307)
61 TIGR02171 Fb_sc_TIGR02171 Fibr 98.2 7.8E-05 1.7E-09 82.1 19.1 118 155-286 319-444 (912)
62 KOG2096 WD40 repeat protein [G 98.2 0.00093 2E-08 64.5 22.7 295 77-417 75-392 (420)
63 PF10647 Gmad1: Lipoprotein Lp 98.1 0.00023 5E-09 69.5 18.6 167 148-340 29-204 (253)
64 COG3386 Gluconolactonase [Carb 98.1 0.002 4.3E-08 64.4 24.7 214 91-340 27-250 (307)
65 PF07433 DUF1513: Protein of u 98.1 0.003 6.6E-08 62.1 25.2 252 149-431 11-284 (305)
66 KOG0291 WD40-repeat-containing 98.1 0.0031 6.8E-08 67.4 26.3 226 150-419 315-541 (893)
67 PRK05077 frsA fermentation/res 98.0 8.9E-06 1.9E-10 85.4 7.5 67 460-535 167-233 (414)
68 KOG0315 G-protein beta subunit 98.0 0.0012 2.5E-08 61.9 19.0 190 110-341 102-296 (311)
69 PF10647 Gmad1: Lipoprotein Lp 97.9 0.0026 5.7E-08 62.1 22.1 200 164-396 1-204 (253)
70 KOG0279 G protein beta subunit 97.9 0.029 6.4E-07 53.6 26.1 230 156-435 29-265 (315)
71 PF07433 DUF1513: Protein of u 97.8 0.014 3.1E-07 57.5 25.1 215 191-436 5-251 (305)
72 COG3458 Acetyl esterase (deace 97.8 2.9E-05 6.3E-10 73.6 6.2 66 463-538 58-123 (321)
73 PTZ00421 coronin; Provisional 97.8 0.005 1.1E-07 66.0 23.3 212 88-339 75-296 (493)
74 PTZ00421 coronin; Provisional 97.8 0.033 7.2E-07 59.8 29.4 205 192-436 77-294 (493)
75 PF05448 AXE1: Acetyl xylan es 97.8 2.9E-05 6.3E-10 78.3 5.6 71 461-541 56-126 (320)
76 KOG0293 WD40 repeat-containing 97.8 0.0013 2.8E-08 65.6 16.5 154 149-341 231-392 (519)
77 PLN02919 haloacid dehalogenase 97.7 0.035 7.6E-07 65.2 29.4 252 149-436 574-892 (1057)
78 PF02239 Cytochrom_D1: Cytochr 97.7 0.0077 1.7E-07 62.2 21.5 193 205-436 7-206 (369)
79 TIGR01840 esterase_phb esteras 97.7 4.6E-05 1E-09 72.4 4.5 57 477-539 1-58 (212)
80 PTZ00420 coronin; Provisional 97.6 0.016 3.4E-07 63.0 23.9 155 149-334 81-249 (568)
81 KOG0266 WD40 repeat-containing 97.6 0.033 7.1E-07 59.5 26.0 234 149-435 166-412 (456)
82 PF06433 Me-amine-dh_H: Methyl 97.6 0.048 1E-06 54.5 24.6 208 195-436 99-324 (342)
83 KOG0266 WD40 repeat-containing 97.6 0.023 4.9E-07 60.7 24.4 198 194-435 163-367 (456)
84 PLN02919 haloacid dehalogenase 97.6 0.049 1.1E-06 64.0 28.8 211 149-393 630-892 (1057)
85 TIGR02171 Fb_sc_TIGR02171 Fibr 97.5 0.00059 1.3E-08 75.4 11.5 96 203-320 319-420 (912)
86 KOG0293 WD40 repeat-containing 97.5 0.0034 7.5E-08 62.7 15.6 241 88-386 269-512 (519)
87 KOG0272 U4/U6 small nuclear ri 97.5 0.012 2.6E-07 59.0 19.5 235 89-385 176-416 (459)
88 PRK10566 esterase; Provisional 97.5 0.00014 3.1E-09 70.7 6.0 55 474-535 11-65 (249)
89 PRK10162 acetyl esterase; Prov 97.4 0.0004 8.8E-09 70.4 8.3 68 461-538 57-126 (318)
90 KOG1445 Tumor-specific antigen 97.4 0.0043 9.3E-08 65.1 15.2 199 84-329 624-842 (1012)
91 PLN02298 hydrolase, alpha/beta 97.4 0.00041 8.9E-09 70.7 7.8 68 460-535 31-98 (330)
92 KOG2055 WD40 repeat protein [G 97.4 0.007 1.5E-07 61.4 16.0 254 156-468 226-492 (514)
93 PTZ00420 coronin; Provisional 97.4 0.054 1.2E-06 58.8 23.9 217 88-341 74-301 (568)
94 KOG2139 WD40 repeat protein [G 97.3 0.015 3.3E-07 57.3 17.1 99 149-264 202-301 (445)
95 KOG0291 WD40-repeat-containing 97.3 0.026 5.6E-07 60.7 19.9 158 144-332 16-176 (893)
96 KOG0645 WD40 repeat protein [G 97.3 0.17 3.7E-06 48.3 23.4 192 155-385 27-223 (312)
97 cd00312 Esterase_lipase Estera 97.3 0.00037 8E-09 75.3 6.5 63 475-542 79-144 (493)
98 TIGR00976 /NonD putative hydro 97.3 0.00053 1.1E-08 75.0 7.1 65 467-539 2-68 (550)
99 KOG0772 Uncharacterized conser 97.3 0.013 2.9E-07 60.2 16.2 217 89-336 215-448 (641)
100 PRK13604 luxD acyl transferase 97.2 0.00085 1.8E-08 66.6 7.3 62 466-535 14-75 (307)
101 PF07676 PD40: WD40-like Beta 97.2 0.0011 2.4E-08 44.3 5.4 38 237-277 2-39 (39)
102 TIGR03100 hydr1_PEP hydrolase, 97.2 0.0011 2.4E-08 65.7 7.7 64 462-535 3-68 (274)
103 KOG2048 WD40 repeat protein [G 97.1 0.032 6.9E-07 59.3 18.2 168 240-435 379-551 (691)
104 KOG1446 Histone H3 (Lys4) meth 97.1 0.29 6.3E-06 47.7 27.5 246 89-394 15-267 (311)
105 COG3490 Uncharacterized protei 97.1 0.055 1.2E-06 52.1 17.9 226 149-396 74-317 (366)
106 TIGR02821 fghA_ester_D S-formy 97.1 0.0013 2.9E-08 65.1 7.6 70 462-536 14-86 (275)
107 COG1770 PtrB Protease II [Amin 97.1 0.61 1.3E-05 50.4 26.9 218 191-437 129-353 (682)
108 PLN02442 S-formylglutathione h 97.0 0.0014 3E-08 65.2 7.1 68 461-533 18-86 (283)
109 KOG0296 Angio-associated migra 97.0 0.41 8.9E-06 47.6 27.7 186 112-341 85-271 (399)
110 KOG0271 Notchless-like WD40 re 97.0 0.041 8.9E-07 54.8 16.6 147 149-330 122-275 (480)
111 KOG0279 G protein beta subunit 97.0 0.072 1.6E-06 51.0 17.4 197 146-392 67-265 (315)
112 COG3490 Uncharacterized protei 97.0 0.21 4.6E-06 48.2 20.4 215 192-436 69-314 (366)
113 TIGR03101 hydr2_PEP hydrolase, 96.9 0.0016 3.4E-08 63.9 6.3 65 462-535 1-67 (266)
114 KOG2139 WD40 repeat protein [G 96.9 0.018 3.9E-07 56.9 13.2 112 192-332 197-310 (445)
115 PLN02385 hydrolase; alpha/beta 96.9 0.0022 4.8E-08 65.9 7.2 65 462-535 62-126 (349)
116 KOG2315 Predicted translation 96.9 0.15 3.2E-06 53.4 19.7 121 165-317 251-371 (566)
117 PF07676 PD40: WD40-like Beta 96.8 0.002 4.4E-08 42.9 4.1 28 301-329 9-39 (39)
118 KOG0271 Notchless-like WD40 re 96.8 0.019 4E-07 57.1 12.2 117 193-337 118-239 (480)
119 KOG0315 G-protein beta subunit 96.8 0.18 3.9E-06 47.6 17.9 139 164-335 60-199 (311)
120 PLN00021 chlorophyllase 96.8 0.0024 5.3E-08 64.3 6.3 55 473-536 37-91 (313)
121 KOG1445 Tumor-specific antigen 96.8 0.019 4.1E-07 60.5 12.4 158 149-333 634-798 (1012)
122 KOG0973 Histone transcription 96.7 0.013 2.8E-07 65.3 11.8 142 149-316 76-235 (942)
123 PRK10985 putative hydrolase; P 96.7 0.003 6.5E-08 64.2 6.6 66 465-538 35-101 (324)
124 PF12146 Hydrolase_4: Putative 96.7 0.003 6.5E-08 49.6 5.1 53 472-534 1-53 (79)
125 PF13360 PQQ_2: PQQ-like domai 96.7 0.56 1.2E-05 44.8 22.2 184 221-436 46-234 (238)
126 COG1506 DAP2 Dipeptidyl aminop 96.7 1.4 3.1E-05 48.9 28.3 192 165-388 149-343 (620)
127 PF02129 Peptidase_S15: X-Pro 96.7 0.0021 4.7E-08 63.5 5.1 62 471-537 1-70 (272)
128 KOG2110 Uncharacterized conser 96.7 0.075 1.6E-06 52.7 15.3 148 155-332 98-249 (391)
129 KOG0272 U4/U6 small nuclear ri 96.6 0.052 1.1E-06 54.7 14.0 228 149-427 182-415 (459)
130 COG5354 Uncharacterized protei 96.6 0.53 1.2E-05 48.8 21.5 235 149-419 138-380 (561)
131 PF06433 Me-amine-dh_H: Methyl 96.6 0.42 9.2E-06 47.9 20.2 206 149-394 101-325 (342)
132 KOG0286 G-protein beta subunit 96.6 0.65 1.4E-05 45.0 20.3 237 149-435 62-306 (343)
133 KOG1274 WD40 repeat protein [G 96.6 0.087 1.9E-06 58.0 16.3 153 150-333 104-262 (933)
134 KOG1274 WD40 repeat protein [G 96.6 0.61 1.3E-05 51.7 22.6 97 221-337 76-172 (933)
135 KOG0288 WD40 repeat protein Ti 96.5 0.043 9.4E-07 55.1 12.5 133 164-328 321-458 (459)
136 KOG1446 Histone H3 (Lys4) meth 96.5 0.97 2.1E-05 44.2 24.0 271 191-524 15-294 (311)
137 PRK11138 outer membrane biogen 96.4 1.4 3.1E-05 45.9 29.2 228 151-436 117-357 (394)
138 PHA02857 monoglyceride lipase; 96.4 0.0059 1.3E-07 60.3 6.5 55 471-535 9-63 (276)
139 COG2936 Predicted acyl esteras 96.4 0.0049 1.1E-07 65.6 6.0 67 463-537 21-93 (563)
140 KOG0318 WD40 repeat stress pro 96.4 1.5 3.3E-05 45.8 25.7 202 82-337 314-521 (603)
141 KOG2314 Translation initiation 96.4 0.59 1.3E-05 49.0 20.4 232 164-433 281-526 (698)
142 KOG0772 Uncharacterized conser 96.4 0.32 6.9E-06 50.5 18.3 230 164-434 188-447 (641)
143 PLN02652 hydrolase; alpha/beta 96.4 0.0089 1.9E-07 62.4 7.7 65 462-536 111-175 (395)
144 PF12715 Abhydrolase_7: Abhydr 96.4 0.0077 1.7E-07 61.0 6.8 68 460-534 87-170 (390)
145 PLN02872 triacylglycerol lipas 96.3 0.0086 1.9E-07 62.4 7.0 73 460-536 43-119 (395)
146 COG2272 PnbA Carboxylesterase 96.2 0.0085 1.8E-07 62.3 5.9 53 475-534 80-135 (491)
147 PLN00181 protein SPA1-RELATED; 96.0 3.9 8.5E-05 47.0 31.4 147 149-329 539-688 (793)
148 KOG1273 WD40 repeat protein [G 96.0 1.7 3.7E-05 42.7 21.9 155 150-336 31-186 (405)
149 PF06977 SdiA-regulated: SdiA- 96.0 0.33 7.1E-06 47.0 15.7 205 83-320 16-241 (248)
150 PRK13613 lipoprotein LpqB; Pro 96.0 0.31 6.8E-06 53.4 17.0 162 149-336 369-542 (599)
151 KOG1407 WD40 repeat protein [F 95.9 1.2 2.6E-05 42.6 18.2 136 149-317 71-206 (313)
152 KOG0286 G-protein beta subunit 95.9 1.8 4E-05 42.0 21.5 198 192-434 57-261 (343)
153 PRK13614 lipoprotein LpqB; Pro 95.8 0.37 8.1E-06 52.3 16.6 164 149-338 349-523 (573)
154 KOG0305 Anaphase promoting com 95.8 1.7 3.6E-05 46.0 20.6 225 149-419 224-452 (484)
155 PF04762 IKI3: IKI3 family; I 95.7 5 0.00011 46.7 26.4 102 149-262 28-139 (928)
156 KOG1407 WD40 repeat protein [F 95.7 0.49 1.1E-05 45.1 14.8 111 193-331 67-177 (313)
157 COG4188 Predicted dienelactone 95.7 0.022 4.8E-07 57.3 6.2 72 462-537 39-111 (365)
158 KOG0263 Transcription initiati 95.7 0.17 3.8E-06 54.7 13.2 129 156-318 505-637 (707)
159 KOG2394 WD40 protein DMR-N9 [G 95.6 0.11 2.3E-06 54.1 11.0 76 239-330 286-361 (636)
160 KOG2315 Predicted translation 95.6 2.2 4.7E-05 45.0 20.0 149 195-376 222-374 (566)
161 KOG4497 Uncharacterized conser 95.6 0.11 2.5E-06 50.7 10.3 139 149-320 15-154 (447)
162 KOG0278 Serine/threonine kinas 95.5 0.67 1.5E-05 43.9 14.9 146 150-332 151-298 (334)
163 PRK10749 lysophospholipase L2; 95.5 0.03 6.5E-07 57.0 6.9 68 458-537 27-94 (330)
164 COG3204 Uncharacterized protei 95.5 2.7 5.8E-05 41.1 20.3 117 192-331 87-210 (316)
165 TIGR03300 assembly_YfgL outer 95.5 3.6 7.9E-05 42.5 25.1 233 152-435 63-300 (377)
166 KOG0273 Beta-transducin family 95.5 1.7 3.7E-05 44.8 18.6 240 149-435 242-485 (524)
167 COG5354 Uncharacterized protei 95.4 0.75 1.6E-05 47.8 16.0 190 89-318 174-377 (561)
168 KOG2048 WD40 repeat protein [G 95.4 0.34 7.5E-06 51.8 13.9 160 149-336 389-551 (691)
169 COG0657 Aes Esterase/lipase [L 95.3 0.048 1E-06 55.0 7.4 63 471-538 60-124 (312)
170 PRK13615 lipoprotein LpqB; Pro 95.3 1.1 2.4E-05 48.6 17.9 157 149-335 340-504 (557)
171 PLN02511 hydrolase 95.3 0.053 1.2E-06 56.6 7.9 70 462-536 72-141 (388)
172 PF13360 PQQ_2: PQQ-like domai 95.3 2.8 6.2E-05 39.8 20.6 189 152-394 34-235 (238)
173 PF06977 SdiA-regulated: SdiA- 95.2 3.1 6.6E-05 40.4 19.2 120 192-332 23-148 (248)
174 KOG0645 WD40 repeat protein [G 95.2 3.1 6.7E-05 40.1 20.7 165 192-394 16-186 (312)
175 KOG2096 WD40 repeat protein [G 95.2 0.15 3.3E-06 49.7 9.8 105 193-320 281-394 (420)
176 KOG0273 Beta-transducin family 95.1 4.7 0.0001 41.7 21.2 145 161-337 335-486 (524)
177 KOG0263 Transcription initiati 95.0 0.53 1.2E-05 51.1 14.3 153 149-337 458-611 (707)
178 KOG1515 Arylacetamide deacetyl 95.0 0.057 1.2E-06 54.6 6.9 62 472-537 71-136 (336)
179 KOG0264 Nucleosome remodeling 95.0 4.1 8.8E-05 41.8 19.6 166 192-386 229-403 (422)
180 PRK13614 lipoprotein LpqB; Pro 94.9 3.7 8E-05 44.8 20.5 199 164-397 320-526 (573)
181 KOG2281 Dipeptidyl aminopeptid 94.8 0.85 1.8E-05 49.0 14.8 35 301-335 358-394 (867)
182 KOG2100 Dipeptidyl aminopeptid 94.8 9.4 0.0002 43.4 25.4 68 369-436 353-426 (755)
183 KOG4497 Uncharacterized conser 94.8 0.37 8E-06 47.3 11.2 111 196-337 14-126 (447)
184 KOG0305 Anaphase promoting com 94.8 2.8 6E-05 44.4 18.5 219 164-429 196-418 (484)
185 COG4257 Vgb Streptogramin lyas 94.7 4.4 9.6E-05 39.3 24.1 227 154-436 72-309 (353)
186 KOG0306 WD40-repeat-containing 94.7 8.2 0.00018 42.4 22.1 154 149-331 419-580 (888)
187 PLN00181 protein SPA1-RELATED; 94.6 11 0.00023 43.4 26.9 152 149-333 582-738 (793)
188 KOG0275 Conserved WD40 repeat- 94.4 1.2 2.7E-05 43.5 13.7 179 222-437 286-472 (508)
189 COG3509 LpqC Poly(3-hydroxybut 94.4 0.05 1.1E-06 52.9 4.4 67 463-542 37-104 (312)
190 COG0412 Dienelactone hydrolase 94.4 0.1 2.2E-06 50.3 6.6 67 462-539 3-69 (236)
191 KOG0973 Histone transcription 94.4 0.65 1.4E-05 52.3 13.3 160 246-431 72-252 (942)
192 KOG2314 Translation initiation 94.3 4.2 9.2E-05 42.9 18.2 164 148-333 352-525 (698)
193 PF00135 COesterase: Carboxyle 94.3 0.051 1.1E-06 59.1 4.8 55 475-533 109-165 (535)
194 KOG1273 WD40 repeat protein [G 94.2 6.1 0.00013 38.9 18.8 97 195-318 28-125 (405)
195 PF01738 DLH: Dienelactone hyd 94.2 0.058 1.3E-06 51.2 4.5 54 475-537 1-54 (218)
196 PRK13613 lipoprotein LpqB; Pro 94.1 9.1 0.0002 42.2 21.5 201 164-394 334-544 (599)
197 PRK11138 outer membrane biogen 94.1 8.6 0.00019 40.0 24.3 183 221-435 130-315 (394)
198 PRK02888 nitrous-oxide reducta 94.0 11 0.00025 41.1 22.2 93 156-262 142-253 (635)
199 KOG0303 Actin-binding protein 93.9 6.9 0.00015 39.7 18.0 153 149-332 88-248 (472)
200 PF06500 DUF1100: Alpha/beta h 93.8 0.064 1.4E-06 55.3 4.1 64 461-534 165-228 (411)
201 PRK00870 haloalkane dehalogena 93.8 0.2 4.4E-06 50.1 7.8 65 460-535 20-84 (302)
202 KOG2111 Uncharacterized conser 93.7 4.6 9.9E-05 39.8 16.1 152 150-331 100-256 (346)
203 COG3391 Uncharacterized conser 93.4 11 0.00024 39.1 22.8 207 149-395 80-289 (381)
204 KOG0639 Transducin-like enhanc 93.3 2.2 4.8E-05 44.4 13.9 177 193-415 468-650 (705)
205 KOG1007 WD repeat protein TSSC 93.3 8.5 0.00018 37.5 17.9 153 164-333 39-201 (370)
206 KOG1539 WD repeat protein [Gen 93.3 1.3 2.7E-05 48.9 12.8 91 221-331 556-646 (910)
207 KOG2106 Uncharacterized conser 93.3 1.7 3.7E-05 45.2 13.1 91 221-331 428-519 (626)
208 PF12740 Chlorophyllase2: Chlo 93.3 0.12 2.5E-06 50.2 4.6 52 477-537 6-57 (259)
209 KOG0771 Prolactin regulatory e 93.2 1.7 3.7E-05 44.1 12.8 158 148-332 192-355 (398)
210 KOG4178 Soluble epoxide hydrol 93.1 0.087 1.9E-06 52.2 3.6 39 495-535 44-82 (322)
211 TIGR03300 assembly_YfgL outer 93.0 13 0.00027 38.5 29.1 227 151-436 102-342 (377)
212 KOG0303 Actin-binding protein 92.9 6.6 0.00014 39.8 16.2 201 91-330 84-293 (472)
213 KOG0319 WD40-repeat-containing 92.9 17 0.00036 40.0 20.2 59 145-208 20-80 (775)
214 TIGR02604 Piru_Ver_Nterm putat 92.9 4.9 0.00011 41.5 16.4 109 222-341 48-180 (367)
215 KOG2394 WD40 protein DMR-N9 [G 92.8 0.11 2.3E-06 54.1 3.9 55 193-259 293-348 (636)
216 KOG0296 Angio-associated migra 92.8 12 0.00026 37.6 19.5 156 243-435 64-223 (399)
217 PF12695 Abhydrolase_5: Alpha/ 92.7 0.13 2.9E-06 44.7 3.9 41 497-539 1-41 (145)
218 TIGR01249 pro_imino_pep_1 prol 92.6 0.24 5.3E-06 49.7 6.3 57 464-534 7-63 (306)
219 COG3391 Uncharacterized conser 92.6 15 0.00032 38.2 27.9 243 149-435 37-286 (381)
220 TIGR03032 conserved hypothetic 92.5 12 0.00026 37.2 23.4 49 368-419 212-260 (335)
221 KOG4532 WD40-like repeat conta 92.5 6 0.00013 38.2 14.6 121 193-338 161-287 (344)
222 KOG1455 Lysophospholipase [Lip 92.5 0.32 6.9E-06 47.7 6.4 63 465-535 31-93 (313)
223 PF03403 PAF-AH_p_II: Platelet 92.5 0.11 2.4E-06 53.9 3.5 42 493-536 98-139 (379)
224 COG3204 Uncharacterized protei 92.3 12 0.00026 36.7 19.6 165 147-335 90-265 (316)
225 KOG1520 Predicted alkaloid syn 92.3 2.2 4.9E-05 43.2 12.3 107 149-262 121-237 (376)
226 TIGR01607 PST-A Plasmodium sub 92.3 0.23 5.1E-06 50.6 5.6 59 466-534 2-84 (332)
227 KOG0639 Transducin-like enhanc 92.0 1.1 2.4E-05 46.4 9.9 141 155-331 521-663 (705)
228 TIGR01250 pro_imino_pep_2 prol 91.9 0.27 5.9E-06 47.8 5.6 40 495-535 25-64 (288)
229 KOG2919 Guanine nucleotide-bin 91.8 7.8 0.00017 38.4 14.8 111 195-332 163-280 (406)
230 KOG0319 WD40-repeat-containing 91.8 4.3 9.4E-05 44.2 14.3 190 195-432 24-222 (775)
231 KOG1524 WD40 repeat-containing 91.7 2 4.4E-05 45.0 11.3 52 149-207 152-203 (737)
232 KOG0275 Conserved WD40 repeat- 91.6 3.4 7.4E-05 40.6 12.2 163 193-394 309-472 (508)
233 KOG0282 mRNA splicing factor [ 91.6 5.4 0.00012 41.4 14.1 151 149-331 221-372 (503)
234 KOG0771 Prolactin regulatory e 91.6 5.6 0.00012 40.5 14.1 160 74-262 172-343 (398)
235 KOG4391 Predicted alpha/beta h 91.6 0.66 1.4E-05 43.2 7.0 62 460-534 53-116 (300)
236 KOG2919 Guanine nucleotide-bin 91.5 14 0.0003 36.7 16.1 97 222-331 134-238 (406)
237 KOG0643 Translation initiation 91.5 14 0.0003 35.7 21.6 139 221-384 74-217 (327)
238 PLN02211 methyl indole-3-aceta 91.4 0.24 5.3E-06 48.9 4.6 42 493-536 16-57 (273)
239 PF10503 Esterase_phd: Esteras 91.4 0.21 4.6E-06 47.5 3.8 51 477-532 3-54 (220)
240 KOG1539 WD repeat protein [Gen 91.4 1 2.3E-05 49.4 9.3 60 191-262 577-636 (910)
241 KOG0278 Serine/threonine kinas 91.1 15 0.00032 35.2 16.0 133 222-388 166-298 (334)
242 PRK13615 lipoprotein LpqB; Pro 91.0 24 0.00052 38.5 19.3 163 194-391 337-504 (557)
243 KOG1524 WD40 repeat-containing 91.0 4.3 9.2E-05 42.7 12.8 95 161-282 81-175 (737)
244 KOG2110 Uncharacterized conser 91.0 8.8 0.00019 38.6 14.5 138 222-388 107-249 (391)
245 PF03088 Str_synth: Strictosid 90.8 1.7 3.7E-05 34.8 7.9 65 195-262 2-75 (89)
246 COG2267 PldB Lysophospholipase 90.8 0.45 9.8E-06 47.7 5.7 64 464-538 12-75 (298)
247 KOG1063 RNA polymerase II elon 90.5 7 0.00015 42.4 14.2 122 192-331 527-648 (764)
248 PRK05855 short chain dehydroge 90.5 0.54 1.2E-05 51.6 6.6 52 471-535 11-62 (582)
249 KOG0307 Vesicle coat complex C 90.3 3.5 7.7E-05 47.0 12.5 258 89-387 65-327 (1049)
250 KOG0289 mRNA splicing factor [ 90.3 24 0.00053 36.4 17.5 181 166-397 286-470 (506)
251 KOG0284 Polyadenylation factor 90.3 5.2 0.00011 40.7 12.4 189 89-319 181-369 (464)
252 TIGR03343 biphenyl_bphD 2-hydr 90.3 0.27 5.9E-06 48.3 3.7 40 496-535 31-71 (282)
253 PF07224 Chlorophyllase: Chlor 90.3 0.28 6.1E-06 47.0 3.5 53 475-536 33-85 (307)
254 TIGR02604 Piru_Ver_Nterm putat 90.2 12 0.00025 38.7 15.9 95 157-257 84-197 (367)
255 KOG0643 Translation initiation 90.2 19 0.00041 34.9 20.1 109 194-320 97-210 (327)
256 PLN02894 hydrolase, alpha/beta 89.5 0.76 1.6E-05 48.2 6.5 41 494-537 104-144 (402)
257 KOG1007 WD repeat protein TSSC 89.5 7 0.00015 38.1 12.1 112 192-329 125-243 (370)
258 PRK05371 x-prolyl-dipeptidyl a 89.3 1.2 2.7E-05 50.6 8.2 23 515-537 270-292 (767)
259 TIGR03032 conserved hypothetic 89.1 3.5 7.6E-05 40.9 10.1 141 74-232 137-293 (335)
260 KOG4627 Kynurenine formamidase 89.1 0.67 1.5E-05 42.8 4.8 72 452-536 36-109 (270)
261 PRK10439 enterobactin/ferric e 89.1 1.1 2.4E-05 47.0 7.2 69 461-535 180-252 (411)
262 KOG0282 mRNA splicing factor [ 89.1 2.9 6.3E-05 43.3 9.8 117 193-334 345-463 (503)
263 KOG1920 IkappaB kinase complex 89.0 43 0.00093 39.2 19.6 59 192-262 70-128 (1265)
264 PF13449 Phytase-like: Esteras 89.0 28 0.00061 35.3 18.2 138 90-231 86-253 (326)
265 PLN03087 BODYGUARD 1 domain co 89.0 0.86 1.9E-05 48.7 6.4 61 465-535 179-243 (481)
266 COG0429 Predicted hydrolase of 88.8 0.99 2.2E-05 45.0 6.1 58 472-537 60-117 (345)
267 KOG1520 Predicted alkaloid syn 88.7 7.4 0.00016 39.6 12.3 81 164-259 198-281 (376)
268 KOG0647 mRNA export protein (c 88.1 15 0.00032 36.2 13.3 96 243-354 27-123 (347)
269 KOG0283 WD40 repeat-containing 87.8 9.3 0.0002 42.2 13.2 160 89-281 410-576 (712)
270 KOG0310 Conserved WD40 repeat- 87.8 34 0.00074 35.7 16.4 204 65-316 88-296 (487)
271 KOG3847 Phospholipase A2 (plat 87.6 0.74 1.6E-05 45.3 4.4 43 492-536 115-157 (399)
272 PF13449 Phytase-like: Esteras 87.6 34 0.00074 34.6 18.9 126 152-281 93-251 (326)
273 TIGR01836 PHA_synth_III_C poly 87.6 2.1 4.5E-05 43.9 8.2 66 461-536 38-106 (350)
274 PF03088 Str_synth: Strictosid 87.5 1.5 3.3E-05 35.1 5.4 52 164-230 36-88 (89)
275 COG4257 Vgb Streptogramin lyas 87.5 30 0.00064 33.8 19.8 195 196-436 67-266 (353)
276 KOG1214 Nidogen and related ba 87.4 29 0.00063 38.8 16.3 154 149-332 1031-1185(1289)
277 TIGR03611 RutD pyrimidine util 87.4 0.7 1.5E-05 44.1 4.3 40 494-536 12-51 (257)
278 TIGR03056 bchO_mg_che_rel puta 87.3 0.98 2.1E-05 44.0 5.3 37 496-535 29-65 (278)
279 KOG0268 Sof1-like rRNA process 87.2 2 4.4E-05 42.9 7.1 144 155-332 200-346 (433)
280 KOG0283 WD40 repeat-containing 86.8 33 0.00071 38.1 16.6 174 222-432 393-576 (712)
281 KOG0265 U5 snRNP-specific prot 86.8 34 0.00073 33.7 19.1 115 245-391 49-165 (338)
282 KOG0289 mRNA splicing factor [ 86.8 42 0.0009 34.7 17.6 123 190-340 347-469 (506)
283 PF05787 DUF839: Bacterial pro 86.7 6.4 0.00014 42.7 11.4 66 195-266 440-523 (524)
284 KOG0277 Peroxisomal targeting 85.7 29 0.00064 33.4 13.6 149 163-340 36-186 (311)
285 PF15492 Nbas_N: Neuroblastoma 85.4 8.2 0.00018 37.5 10.1 78 249-341 3-81 (282)
286 COG2945 Predicted hydrolase of 85.3 1.9 4.1E-05 39.6 5.4 61 462-534 5-70 (210)
287 PF06342 DUF1057: Alpha/beta h 85.3 3.8 8.3E-05 40.1 7.9 64 464-536 9-74 (297)
288 TIGR03606 non_repeat_PQQ dehyd 85.3 55 0.0012 34.8 19.5 108 149-260 36-161 (454)
289 TIGR02427 protocat_pcaD 3-oxoa 84.8 1.2 2.6E-05 42.0 4.4 39 494-535 12-50 (251)
290 PRK07581 hypothetical protein; 84.4 1.5 3.3E-05 44.6 5.2 40 494-535 40-82 (339)
291 COG4099 Predicted peptidase [G 84.3 1.7 3.6E-05 42.6 4.9 58 471-532 170-234 (387)
292 KOG2106 Uncharacterized conser 84.2 6.6 0.00014 41.1 9.3 79 164-259 427-507 (626)
293 PRK10349 carboxylesterase BioH 83.9 1 2.2E-05 43.6 3.5 40 493-535 11-50 (256)
294 PF04762 IKI3: IKI3 family; I 83.7 98 0.0021 36.3 23.7 42 352-397 208-252 (928)
295 KOG1214 Nidogen and related ba 83.6 45 0.00098 37.4 15.6 19 154-174 990-1008(1289)
296 KOG4499 Ca2+-binding protein R 83.2 43 0.00094 31.9 21.3 28 147-174 19-46 (310)
297 TIGR02240 PHA_depoly_arom poly 82.5 2 4.3E-05 42.2 4.9 53 471-535 10-62 (276)
298 PRK06489 hypothetical protein; 82.4 2.8 6.1E-05 43.1 6.2 41 495-535 69-116 (360)
299 PF11768 DUF3312: Protein of u 82.2 60 0.0013 34.9 15.7 69 246-332 262-330 (545)
300 PF05570 DUF765: Circovirus pr 82.2 0.7 1.5E-05 26.9 0.9 25 52-76 5-29 (29)
301 cd00216 PQQ_DH Dehydrogenases 82.0 79 0.0017 34.1 31.0 53 380-436 365-428 (488)
302 PRK02888 nitrous-oxide reducta 81.8 89 0.0019 34.5 17.3 50 381-433 296-352 (635)
303 KOG1332 Vesicle coat complex C 81.8 31 0.00067 33.0 12.0 94 237-341 201-295 (299)
304 KOG4378 Nuclear protein COP1 [ 81.7 53 0.0011 34.6 14.5 134 149-311 171-304 (673)
305 TIGR01392 homoserO_Ac_trn homo 81.6 2 4.4E-05 44.0 4.8 57 471-534 14-82 (351)
306 PLN02824 hydrolase, alpha/beta 81.3 1.9 4.1E-05 42.8 4.4 38 496-536 30-67 (294)
307 KOG0295 WD40 repeat-containing 81.1 66 0.0014 32.6 14.5 237 157-435 122-367 (406)
308 PRK03204 haloalkane dehalogena 81.1 1.2 2.7E-05 44.1 2.9 37 496-535 35-71 (286)
309 KOG1523 Actin-related protein 81.0 62 0.0014 32.2 16.4 102 196-317 16-117 (361)
310 KOG2624 Triglyceride lipase-ch 80.8 4.2 9E-05 42.3 6.7 74 460-543 47-124 (403)
311 PHA03098 kelch-like protein; P 80.7 90 0.002 33.9 18.4 190 220-436 310-515 (534)
312 KOG2111 Uncharacterized conser 80.4 28 0.0006 34.5 11.6 105 156-282 150-257 (346)
313 PRK10673 acyl-CoA esterase; Pr 80.4 2.3 5E-05 40.9 4.5 39 494-535 15-53 (255)
314 KOG0288 WD40 repeat protein Ti 80.1 59 0.0013 33.5 14.0 100 223-341 324-425 (459)
315 PF00756 Esterase: Putative es 79.7 1.3 2.9E-05 42.7 2.6 30 471-504 4-33 (251)
316 PRK03592 haloalkane dehalogena 79.0 1.8 3.8E-05 43.0 3.3 37 496-535 28-64 (295)
317 PLN02679 hydrolase, alpha/beta 79.0 1.7 3.6E-05 44.8 3.2 37 496-535 89-125 (360)
318 KOG1009 Chromatin assembly com 79.0 4.4 9.5E-05 41.1 5.8 58 193-262 126-184 (434)
319 KOG4532 WD40-like repeat conta 78.8 67 0.0015 31.3 15.7 71 247-330 162-232 (344)
320 KOG0264 Nucleosome remodeling 78.4 83 0.0018 32.6 14.7 160 149-331 234-404 (422)
321 KOG0321 WD40 repeat-containing 78.1 1.1E+02 0.0023 33.5 15.8 103 191-319 272-381 (720)
322 COG4757 Predicted alpha/beta h 77.9 2.6 5.6E-05 39.9 3.7 63 464-537 8-70 (281)
323 KOG0284 Polyadenylation factor 77.7 54 0.0012 33.6 12.9 137 149-317 187-324 (464)
324 KOG0265 U5 snRNP-specific prot 77.5 32 0.0007 33.8 11.0 111 149-282 54-164 (338)
325 KOG1063 RNA polymerase II elon 77.2 33 0.00071 37.5 11.9 122 242-386 266-390 (764)
326 KOG1516 Carboxylesterase and r 76.9 2.8 6.1E-05 45.8 4.3 55 475-534 97-154 (545)
327 KOG0640 mRNA cleavage stimulat 76.9 38 0.00083 33.5 11.3 168 178-384 104-288 (430)
328 PF03022 MRJP: Major royal jel 76.4 84 0.0018 31.2 15.9 39 192-240 62-104 (287)
329 KOG4499 Ca2+-binding protein R 76.2 33 0.00071 32.7 10.3 89 191-291 109-199 (310)
330 KOG1838 Alpha/beta hydrolase [ 76.2 8.1 0.00018 40.0 7.0 62 471-534 102-164 (409)
331 PF09910 DUF2139: Uncharacteri 75.9 33 0.00072 33.8 10.6 107 323-436 76-185 (339)
332 PF15525 DUF4652: Domain of un 75.9 31 0.00067 31.6 9.7 86 252-342 66-157 (200)
333 PLN03084 alpha/beta hydrolase 75.2 3.6 7.9E-05 42.8 4.4 37 496-535 128-164 (383)
334 PF05787 DUF839: Bacterial pro 74.9 67 0.0015 34.9 14.0 55 307-375 464-520 (524)
335 KOG0306 WD40-repeat-containing 74.7 73 0.0016 35.4 13.7 153 149-331 378-538 (888)
336 KOG0277 Peroxisomal targeting 74.7 85 0.0018 30.4 12.8 161 248-432 13-180 (311)
337 PF05096 Glu_cyclase_2: Glutam 74.3 90 0.002 30.5 19.1 174 219-431 66-260 (264)
338 PF07995 GSDH: Glucose / Sorbo 73.6 1.1E+02 0.0023 31.1 16.3 170 149-330 8-211 (331)
339 TIGR03502 lipase_Pla1_cef extr 72.4 3.9 8.6E-05 46.2 4.0 40 494-535 448-487 (792)
340 KOG3914 WD repeat protein WDR4 72.3 1.2E+02 0.0026 31.1 14.1 29 302-331 153-181 (390)
341 PTZ00472 serine carboxypeptida 72.2 6.8 0.00015 41.9 5.6 63 472-541 60-138 (462)
342 KOG4547 WD40 repeat-containing 71.9 1.5E+02 0.0032 31.9 15.0 137 163-332 78-221 (541)
343 KOG4378 Nuclear protein COP1 [ 71.8 61 0.0013 34.2 11.9 71 147-232 213-283 (673)
344 KOG0640 mRNA cleavage stimulat 71.8 1.1E+02 0.0024 30.4 13.2 110 193-327 175-287 (430)
345 PRK00175 metX homoserine O-ace 69.6 5.9 0.00013 41.1 4.4 40 495-534 48-101 (379)
346 KOG0269 WD40 repeat-containing 68.9 90 0.0019 34.8 12.9 154 150-332 141-295 (839)
347 TIGR03606 non_repeat_PQQ dehyd 68.9 1.3E+02 0.0029 31.9 14.2 112 195-318 34-163 (454)
348 cd00216 PQQ_DH Dehydrogenases 68.7 1.7E+02 0.0038 31.4 25.7 25 367-394 405-429 (488)
349 KOG0641 WD40 repeat protein [G 67.7 1.1E+02 0.0024 28.8 14.0 113 193-330 234-348 (350)
350 KOG4283 Transcription-coupled 67.5 1.3E+02 0.0029 29.7 16.8 57 196-262 149-207 (397)
351 cd00707 Pancreat_lipase_like P 67.4 5.1 0.00011 39.6 3.2 41 494-535 35-77 (275)
352 PF02333 Phytase: Phytase; In 67.3 1.6E+02 0.0035 30.5 17.6 98 156-263 69-178 (381)
353 KOG2041 WD40 repeat protein [G 67.0 48 0.001 36.6 10.3 51 149-208 122-174 (1189)
354 KOG0650 WD40 repeat nucleolar 65.7 2.1E+02 0.0045 31.2 17.8 112 302-433 523-638 (733)
355 PLN02193 nitrile-specifier pro 65.1 2E+02 0.0043 30.8 18.9 149 272-436 243-414 (470)
356 PF04053 Coatomer_WDAD: Coatom 65.0 1.9E+02 0.0042 30.7 17.6 47 222-281 127-173 (443)
357 KOG1523 Actin-related protein 64.4 1.2E+02 0.0027 30.2 11.8 118 191-328 56-173 (361)
358 KOG1538 Uncharacterized conser 63.5 16 0.00035 39.6 6.1 56 192-259 14-69 (1081)
359 TIGR03075 PQQ_enz_alc_DH PQQ-d 63.2 2.3E+02 0.005 30.9 25.3 56 219-285 269-336 (527)
360 COG3571 Predicted hydrolase of 63.0 9.5 0.00021 34.0 3.6 41 492-532 11-51 (213)
361 KOG3621 WD40 repeat-containing 62.3 33 0.00072 37.6 8.2 99 221-332 55-155 (726)
362 smart00135 LY Low-density lipo 61.7 17 0.00036 23.7 4.1 28 147-174 13-40 (43)
363 KOG0302 Ribosome Assembly prot 61.4 2E+02 0.0043 29.5 16.7 113 179-318 250-366 (440)
364 PLN02578 hydrolase 60.8 8.9 0.00019 39.3 3.8 39 496-537 87-125 (354)
365 PRK11460 putative hydrolase; P 60.3 9.7 0.00021 36.4 3.7 42 492-535 13-54 (232)
366 PRK14875 acetoin dehydrogenase 60.0 13 0.00028 38.1 4.8 40 495-537 131-170 (371)
367 PF09826 Beta_propel: Beta pro 59.3 2.7E+02 0.0058 30.3 27.9 100 325-435 248-358 (521)
368 PHA03098 kelch-like protein; P 58.9 2.7E+02 0.0058 30.2 19.1 200 166-398 312-520 (534)
369 PF02273 Acyl_transf_2: Acyl t 58.8 26 0.00057 33.6 6.0 55 471-532 11-65 (294)
370 PF12566 DUF3748: Protein of u 58.7 62 0.0014 27.0 7.4 15 250-264 74-88 (122)
371 KOG3101 Esterase D [General fu 58.1 17 0.00037 34.0 4.5 52 476-534 30-86 (283)
372 COG3670 Lignostilbene-alpha,be 57.1 2.6E+02 0.0057 29.6 19.6 39 89-130 180-219 (490)
373 PF15492 Nbas_N: Neuroblastoma 55.6 63 0.0014 31.6 8.1 28 246-281 46-73 (282)
374 PRK08775 homoserine O-acetyltr 55.4 24 0.00053 35.8 5.9 17 519-535 94-110 (343)
375 PF02333 Phytase: Phytase; In 55.4 2.6E+02 0.0056 29.0 13.8 104 314-430 70-189 (381)
376 KOG1009 Chromatin assembly com 54.2 33 0.00071 35.1 6.2 38 301-341 124-161 (434)
377 PHA02713 hypothetical protein; 53.8 3.4E+02 0.0073 29.8 17.8 191 222-436 273-493 (557)
378 KOG2564 Predicted acetyltransf 52.8 27 0.00059 34.2 5.1 68 456-535 45-113 (343)
379 PF04083 Abhydro_lipase: Parti 51.9 57 0.0012 24.2 5.7 46 460-508 11-56 (63)
380 PHA01753 Holliday junction res 51.6 16 0.00036 30.9 3.1 25 515-539 13-37 (121)
381 KOG2321 WD40 repeat protein [G 50.6 3.6E+02 0.0079 29.3 14.6 111 246-387 231-343 (703)
382 PF10340 DUF2424: Protein of u 50.5 15 0.00032 37.8 3.2 54 477-536 108-166 (374)
383 PLN02193 nitrile-specifier pro 50.3 3.5E+02 0.0075 28.9 24.6 159 219-397 242-418 (470)
384 PRK07868 acyl-CoA synthetase; 50.1 51 0.0011 39.1 8.1 40 496-535 68-110 (994)
385 PF05096 Glu_cyclase_2: Glutam 50.1 2.6E+02 0.0056 27.4 14.2 151 249-436 50-207 (264)
386 KOG1538 Uncharacterized conser 49.7 40 0.00087 36.8 6.2 56 246-317 15-70 (1081)
387 KOG2237 Predicted serine prote 49.2 2.6E+02 0.0055 31.0 12.1 118 250-390 144-269 (712)
388 PF07995 GSDH: Glucose / Sorbo 48.7 35 0.00075 34.7 5.7 52 272-329 280-331 (331)
389 KOG0310 Conserved WD40 repeat- 48.5 3.6E+02 0.0077 28.6 18.7 151 150-335 76-227 (487)
390 PF15525 DUF4652: Domain of un 48.4 2.2E+02 0.0049 26.2 10.0 39 199-240 66-104 (200)
391 PF11768 DUF3312: Protein of u 46.8 96 0.0021 33.4 8.5 68 194-282 263-330 (545)
392 KOG2377 Uncharacterized conser 45.6 2.9E+02 0.0063 29.2 11.4 99 192-318 68-171 (657)
393 PHA02713 hypothetical protein; 44.3 4.7E+02 0.01 28.7 19.8 237 166-436 273-537 (557)
394 TIGR03075 PQQ_enz_alc_DH PQQ-d 43.8 4.6E+02 0.01 28.5 32.1 52 381-436 441-494 (527)
395 KOG0292 Vesicle coat complex C 43.4 5.8E+02 0.013 29.5 15.7 73 222-317 472-545 (1202)
396 KOG0313 Microtubule binding pr 41.8 4.1E+02 0.0088 27.3 13.9 110 193-328 263-373 (423)
397 PF14339 DUF4394: Domain of un 41.7 2.6E+02 0.0055 26.9 9.8 77 303-394 29-108 (236)
398 PF05935 Arylsulfotrans: Aryls 40.1 5E+02 0.011 27.8 18.7 88 155-262 114-208 (477)
399 COG0596 MhpC Predicted hydrola 39.8 19 0.00042 33.3 2.1 36 496-534 22-60 (282)
400 TIGR02276 beta_rpt_yvtn 40-res 39.0 1.1E+02 0.0023 19.7 5.8 25 200-232 1-25 (42)
401 KOG0646 WD40 repeat protein [G 38.9 4.9E+02 0.011 27.4 15.0 156 153-335 133-309 (476)
402 KOG0322 G-protein beta subunit 38.4 1.2E+02 0.0026 29.5 6.9 90 222-328 230-320 (323)
403 KOG1408 WD40 repeat protein [F 37.5 3.5E+02 0.0077 30.3 11.0 99 193-318 599-702 (1080)
404 COG3211 PhoX Predicted phospha 37.3 1E+02 0.0022 33.4 6.9 70 195-267 504-576 (616)
405 PF09757 Arb2: Arb2 domain; I 37.0 11 0.00025 34.4 0.0 53 475-533 84-148 (178)
406 KOG0290 Conserved WD40 repeat- 36.5 4.4E+02 0.0096 26.2 15.6 119 253-391 56-183 (364)
407 KOG0307 Vesicle coat complex C 36.2 2.9E+02 0.0063 32.3 10.6 143 165-331 184-327 (1049)
408 KOG1587 Cytoplasmic dynein int 35.8 6.3E+02 0.014 27.8 14.8 150 154-330 359-515 (555)
409 PF09910 DUF2139: Uncharacteri 35.8 1.1E+02 0.0023 30.4 6.3 62 378-439 75-146 (339)
410 KOG2321 WD40 repeat protein [G 35.7 6.2E+02 0.013 27.6 16.6 60 194-263 55-114 (703)
411 KOG1552 Predicted alpha/beta h 35.5 1.3E+02 0.0029 29.1 6.9 63 461-537 35-101 (258)
412 KOG3617 WD40 and TPR repeat-co 35.1 1.1E+02 0.0023 34.7 6.9 89 226-333 45-133 (1416)
413 TIGR01838 PHA_synth_I poly(R)- 34.6 1.3E+02 0.0029 32.7 7.6 64 463-536 166-232 (532)
414 KOG0268 Sof1-like rRNA process 34.5 65 0.0014 32.6 4.7 109 148-280 235-346 (433)
415 TIGR03074 PQQ_membr_DH membran 34.1 5.9E+02 0.013 29.2 12.9 24 368-394 260-283 (764)
416 KOG3621 WD40 repeat-containing 34.1 7.1E+02 0.015 27.9 15.8 37 383-419 308-344 (726)
417 PF05935 Arylsulfotrans: Aryls 34.1 6.2E+02 0.013 27.1 17.5 165 203-397 114-309 (477)
418 PHA02790 Kelch-like protein; P 33.4 4.4E+02 0.0096 28.2 11.5 114 311-436 271-388 (480)
419 COG1520 FOG: WD40-like repeat 33.1 4.9E+02 0.011 26.6 11.5 113 301-435 101-220 (370)
420 COG1647 Esterase/lipase [Gener 33.0 45 0.00097 31.6 3.2 47 496-544 16-62 (243)
421 KOG0313 Microtubule binding pr 32.9 5.7E+02 0.012 26.4 14.3 111 243-385 260-374 (423)
422 PF12894 Apc4_WD40: Anaphase-p 32.7 66 0.0014 22.2 3.3 29 302-331 13-41 (47)
423 PF04053 Coatomer_WDAD: Coatom 32.6 6.3E+02 0.014 26.8 12.5 80 166-262 127-213 (443)
424 KOG1230 Protein containing rep 32.1 6.2E+02 0.013 26.6 13.7 154 166-335 99-277 (521)
425 PF12566 DUF3748: Protein of u 31.5 40 0.00087 28.1 2.3 17 196-212 73-89 (122)
426 KOG1408 WD40 repeat protein [F 31.5 3.4E+02 0.0075 30.3 9.7 57 195-262 646-702 (1080)
427 PF08553 VID27: VID27 cytoplas 31.2 8E+02 0.017 28.3 13.1 86 221-331 552-645 (794)
428 PF14339 DUF4394: Domain of un 30.9 4.9E+02 0.011 25.0 16.5 74 147-232 31-106 (236)
429 PF10584 Proteasome_A_N: Prote 30.3 12 0.00026 21.7 -0.6 9 307-315 7-15 (23)
430 TIGR03548 mutarot_permut cycli 30.3 5.6E+02 0.012 25.5 17.5 65 272-342 138-203 (323)
431 KOG1963 WD40 repeat protein [G 30.2 2.4E+02 0.0052 31.9 8.6 58 193-262 254-311 (792)
432 KOG3914 WD repeat protein WDR4 29.4 6.5E+02 0.014 26.0 13.3 64 367-435 162-226 (390)
433 PF00400 WD40: WD domain, G-be 29.3 1.3E+02 0.0029 18.8 4.3 26 301-327 12-37 (39)
434 TIGR03548 mutarot_permut cycli 29.2 5.8E+02 0.013 25.4 12.5 98 311-419 123-232 (323)
435 TIGR03230 lipo_lipase lipoprot 29.1 67 0.0014 34.0 4.1 42 494-535 40-84 (442)
436 PF05567 Neisseria_PilC: Neiss 28.8 2.7E+02 0.0058 28.3 8.4 56 272-334 180-240 (335)
437 KOG0647 mRNA export protein (c 28.7 6E+02 0.013 25.4 18.8 89 148-253 33-123 (347)
438 COG2382 Fes Enterochelin ester 28.5 50 0.0011 32.7 2.9 39 461-504 69-107 (299)
439 PF05694 SBP56: 56kDa selenium 28.4 7.4E+02 0.016 26.3 13.0 203 200-418 139-393 (461)
440 KOG0646 WD40 repeat protein [G 27.7 7.5E+02 0.016 26.1 11.5 69 303-386 84-152 (476)
441 KOG1230 Protein containing rep 26.8 7.6E+02 0.016 25.9 11.3 113 273-398 98-224 (521)
442 COG4246 Uncharacterized protei 26.7 6.1E+02 0.013 24.8 11.4 84 301-391 74-167 (340)
443 COG4296 Uncharacterized protei 26.7 92 0.002 26.7 3.7 47 76-123 99-146 (156)
444 KOG4441 Proteins containing BT 26.6 7.4E+02 0.016 27.3 11.9 118 310-439 331-459 (571)
445 COG3823 Glutamine cyclotransfe 26.3 5.6E+02 0.012 24.3 11.5 111 367-501 139-256 (262)
446 KOG1034 Transcriptional repres 26.0 1.2E+02 0.0025 30.5 4.8 54 272-332 328-382 (385)
447 KOG0294 WD40 repeat-containing 25.5 7E+02 0.015 25.1 20.8 148 149-331 48-197 (362)
448 KOG0649 WD40 repeat protein [G 25.3 5.9E+02 0.013 24.7 9.1 93 353-460 114-209 (325)
449 PLN02980 2-oxoglutarate decarb 25.1 63 0.0014 40.6 3.6 39 494-535 1370-1408(1655)
450 PF03089 RAG2: Recombination a 24.9 1.8E+02 0.004 28.6 5.8 55 377-431 127-189 (337)
451 PF03991 Prion_octapep: Copper 24.4 30 0.00064 14.5 0.2 7 501-507 1-7 (8)
452 PF12048 DUF3530: Protein of u 24.3 1.8E+02 0.0038 29.3 6.1 68 457-533 58-126 (310)
453 KOG4037 Photoreceptor synaptic 24.2 1.7E+02 0.0036 26.4 5.0 31 75-105 56-86 (240)
454 KOG4441 Proteins containing BT 24.1 8.4E+02 0.018 26.9 11.7 115 310-436 426-550 (571)
455 PF13570 PQQ_3: PQQ-like domai 23.8 1.4E+02 0.0031 19.3 3.6 22 151-173 18-39 (40)
456 PF00450 Peptidase_S10: Serine 23.8 64 0.0014 33.5 3.0 63 471-540 22-101 (415)
457 KOG1036 Mitotic spindle checkp 23.7 7.4E+02 0.016 24.7 13.1 79 243-341 13-91 (323)
458 KOG0641 WD40 repeat protein [G 22.7 6.7E+02 0.015 23.8 10.3 85 301-392 90-174 (350)
459 PLN02153 epithiospecifier prot 22.6 7.9E+02 0.017 24.6 18.8 199 221-439 50-291 (341)
460 KOG4640 Anaphase-promoting com 22.3 2.8E+02 0.006 30.5 7.1 59 149-231 36-94 (665)
461 KOG0290 Conserved WD40 repeat- 22.2 7.9E+02 0.017 24.5 13.8 104 192-318 198-306 (364)
462 KOG1920 IkappaB kinase complex 22.0 1.4E+03 0.031 27.4 20.5 52 152-210 78-129 (1265)
463 PRK14683 hypothetical protein; 21.7 89 0.0019 26.7 2.8 23 515-537 22-44 (122)
464 KOG1034 Transcriptional repres 21.1 5.8E+02 0.013 25.8 8.5 79 163-259 113-197 (385)
465 KOG3617 WD40 and TPR repeat-co 21.0 2.6E+02 0.0056 32.0 6.6 82 159-259 35-117 (1416)
466 PRK09767 hypothetical protein; 20.8 92 0.002 26.3 2.7 37 493-530 53-90 (117)
467 KOG1332 Vesicle coat complex C 20.6 7.9E+02 0.017 23.9 10.4 114 255-391 23-138 (299)
468 KOG1587 Cytoplasmic dynein int 20.6 2.5E+02 0.0054 30.8 6.6 73 193-281 444-516 (555)
469 PRK14676 hypothetical protein; 20.5 98 0.0021 26.2 2.8 21 516-536 17-37 (117)
470 PRK14679 hypothetical protein; 20.3 97 0.0021 26.7 2.8 23 515-537 24-46 (128)
No 1
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-32 Score=296.51 Aligned_cols=414 Identities=19% Similarity=0.232 Sum_probs=281.1
Q ss_pred CcCCHHHHhcCCCccCceEEcC-CCcEEEEEecC---CCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEE
Q 008927 77 SPLTADVVSGASKRLGGTAVDG-HGRLIWLESRP---TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI 152 (548)
Q Consensus 77 spit~~~l~~~~~~~~~~~~sp-g~~i~~~~~~~---~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~ 152 (548)
.++.++++... +.++++.++| ++.++|+.... ....++.+|..+.. ..+.++... .+ ....|++
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~-~~-------~~~~~sp 69 (620)
T COG1506 2 KAFDAEDLLAL-ARVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGK---TVRLLTFGG-GV-------SELRWSP 69 (620)
T ss_pred CcCCHHHHHhh-hcccCcccCCCCceeEEeeccccccccccccceEEEecc---cccccccCC-cc-------cccccCC
Confidence 46788999998 9999999999 99999997542 12456777774322 233333332 11 1236889
Q ss_pred ECCEEEEEe-CCC--CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEecc----CC-----------
Q 008927 153 FGDTVIFSN-YKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDR----RQ----------- 214 (548)
Q Consensus 153 ~~~~i~F~~-~~~--~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~----~~----------- 214 (548)
++..++|.+ +.. .++|+++.+ + .++.. .....+..|+|+|+.+++..... .+
T Consensus 70 dg~~~~~~~~~~~~~~~l~l~~~~---g---~~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (620)
T COG1506 70 DGSVLAFVSTDGGRVAQLYLVDVG---G---LITKT----AFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPV 139 (620)
T ss_pred CCCEEEEEeccCCCcceEEEEecC---C---ceeee----ecccccceeCCCCCeEEEEecccccccCCceeeeecccce
Confidence 999999998 222 489998875 2 22221 12356678999999998842111 00
Q ss_pred ---CCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEE
Q 008927 215 ---DALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC 291 (548)
Q Consensus 215 ---~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~ 291 (548)
..+..+.++|++|..+ . ...+..+...+..+++++|++.++.+.......||. ...++.... ++. ...
T Consensus 140 ~~~~~g~~~~~l~~~d~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~---~~~ 210 (620)
T COG1506 140 WFDGRGGERSDLYVVDIES-K---LIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWV-TNLYVLIEG-NGE---LES 210 (620)
T ss_pred eecCCCCcccceEEEccCc-c---cccccCCCCceeeeeeCCCCceeEEeeeccccCCce-EeeEEEecC-CCc---eEE
Confidence 0012467888888877 4 555655555566778888888887776544323443 233333332 343 344
Q ss_pred EcCCCCCcccCCcCceECcCCc-EEEEEeCCC-Cee---eEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecC
Q 008927 292 VAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN-GFW---NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHG 366 (548)
Q Consensus 292 l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~-g~~---~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~ 366 (548)
++... ..+..+.|.+||+ +++...... ++. .++.++.+.++.........+ ....|... ...
T Consensus 211 ~~~~~----~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~---~~~----- 277 (620)
T COG1506 211 LTPGE----GSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDD-TRGAWAVE---GGL----- 277 (620)
T ss_pred EcCCC----ceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCc-ccCcHHhc---ccc-----
Confidence 55543 5678889999999 888765422 222 345555344444331111000 01111110 111
Q ss_pred CCCEEEEEEEe-CCeEEEEEEECCCCceEeecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEEe
Q 008927 367 EKNLIACSYRQ-NGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVW 445 (548)
Q Consensus 367 d~~~l~~~~~~-~g~~~L~~~dl~~g~~~~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~l 445 (548)
+++.+++.... .+...++.++...+....+..+...+..++.+++.+++..+++..|+++|+++. +.+ ..+
T Consensus 278 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~-~~~-------~~~ 349 (620)
T COG1506 278 DGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDR-GEE-------AKL 349 (620)
T ss_pred CCCcEEEEEecCCCceEEEEEeccCCceeeecCCCceEEEEeeCCCEEEEEecCCCCccceEEEcC-CCc-------eEE
Confidence 56677777766 677778877765555555555556677777799999999999999999999986 332 233
Q ss_pred cCCCCCCccCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCc
Q 008927 446 SSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW 525 (548)
Q Consensus 446 ~~~~~~~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGy 525 (548)
+..+...+....+.+||.++|++. ||.+|+||+|+|.+ |+ +.|+||+||++||||++++++.|.+++|+|+++||
T Consensus 350 ~~~~~~~~~~~~~~~~e~~~~~~~-dG~~i~~~l~~P~~--~~--~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~ 424 (620)
T COG1506 350 TSSNNSGLKKVKLAEPEPVTYKSN-DGETIHGWLYKPPG--FD--PRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGY 424 (620)
T ss_pred eecccccccccccCCceEEEEEcC-CCCEEEEEEecCCC--CC--CCCCCCEEEEeCCCCccccccccchhhHHHhcCCe
Confidence 344456677888999999999998 99999999999976 54 36779999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCChhhhhccc
Q 008927 526 AFVDVNYGGSTGLSSVPSTSIF 547 (548)
Q Consensus 526 aVl~~NyRGStGyG~~f~~ai~ 547 (548)
+|+++|||||+|||++|++++.
T Consensus 425 ~V~~~n~RGS~GyG~~F~~~~~ 446 (620)
T COG1506 425 AVLAPNYRGSTGYGREFADAIR 446 (620)
T ss_pred EEEEeCCCCCCccHHHHHHhhh
Confidence 9999999999999999999875
No 2
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=3.1e-30 Score=283.99 Aligned_cols=402 Identities=10% Similarity=0.058 Sum_probs=262.2
Q ss_pred ceEEcCCCcEEEEEecCCCCCceEEEEcCC-CCC--CCCcccCC-CCCCccccceeeCCeeeEEECCEEEEEeCCCC---
Q 008927 93 GTAVDGHGRLIWLESRPTEAGRGVLVKEPA-KAG--DEPSDITP-KEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--- 165 (548)
Q Consensus 93 ~~~~spg~~i~~~~~~~~e~gr~~l~~~~~-~~~--~~~~~lt~-~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~--- 165 (548)
-|... |+..||....+. .+..||+... .+. +..+-|.. ..+.....-+..++-.|+||++.|+|..+.++
T Consensus 76 ~p~~~-g~~~y~~~~~~g--~~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~ 152 (686)
T PRK10115 76 APYIK-NGYRYRHIYEPG--CEYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQ 152 (686)
T ss_pred CCEEE-CCEEEEEEEcCC--CccEEEEEecCCCCCCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEE
Confidence 35555 898888875432 2566664432 210 12233332 21211112233455577888999999987654
Q ss_pred -eEEEEeCCCCCCC--ceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeec
Q 008927 166 -RLYKHSIDSKDSS--PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG 242 (548)
Q Consensus 166 -~Ly~~~~~~~~~~--~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~ 242 (548)
+|+++++.+ ++ +..|.. .+. .+.|++||+.|+|+..+... ....+||+.++.++... .++|.++
T Consensus 153 ~~l~v~d~~t--g~~l~~~i~~------~~~-~~~w~~D~~~~~y~~~~~~~---~~~~~v~~h~lgt~~~~-d~lv~~e 219 (686)
T PRK10115 153 YGIRFRNLET--GNWYPELLDN------VEP-SFVWANDSWTFYYVRKHPVT---LLPYQVWRHTIGTPASQ-DELVYEE 219 (686)
T ss_pred EEEEEEECCC--CCCCCccccC------cce-EEEEeeCCCEEEEEEecCCC---CCCCEEEEEECCCChhH-CeEEEee
Confidence 799999987 65 344433 233 37899999999997653210 13478999999998311 4566654
Q ss_pred CC--ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC-CCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEe
Q 008927 243 SD--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD 319 (548)
Q Consensus 243 ~~--~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~-~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd 319 (548)
.+ +......+.||+++.... ... ..+++++++.+. +++. ...+.... + ... .+. ..++.+|+.++
T Consensus 220 ~~~~~~~~~~~s~d~~~l~i~~-~~~----~~~~~~l~~~~~~~~~~--~~~~~~~~-~--~~~-~~~-~~~~~ly~~tn 287 (686)
T PRK10115 220 KDDTFYVSLHKTTSKHYVVIHL-ASA----TTSEVLLLDAELADAEP--FVFLPRRK-D--HEY-SLD-HYQHRFYLRSN 287 (686)
T ss_pred CCCCEEEEEEEcCCCCEEEEEE-ECC----ccccEEEEECcCCCCCc--eEEEECCC-C--CEE-EEE-eCCCEEEEEEc
Confidence 32 232334455999887433 322 245777777432 2331 22222221 1 111 121 22233888888
Q ss_pred CCCCeeeEEEEecc-CCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecC
Q 008927 320 RKNGFWNLHKWIES-NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (548)
Q Consensus 320 ~~~g~~~Ly~~d~~-~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~ 398 (548)
.+.....|+.+++. .++.+.|.+... .+.. ..+.+ .++.|++...+++..+|+++++.+++++.|..
T Consensus 288 ~~~~~~~l~~~~~~~~~~~~~l~~~~~-----~~~i--~~~~~-----~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~ 355 (686)
T PRK10115 288 RHGKNFGLYRTRVRDEQQWEELIPPRE-----NIML--EGFTL-----FTDWLVVEERQRGLTSLRQINRKTREVIGIAF 355 (686)
T ss_pred CCCCCceEEEecCCCcccCeEEECCCC-----CCEE--EEEEE-----ECCEEEEEEEeCCEEEEEEEcCCCCceEEecC
Confidence 76677889999886 355566664311 1111 12334 35689999999999999999987777777663
Q ss_pred CC-ceeEe--ee--ecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEEecCCCCCCccCCCccCCeEEEeeccCCCe
Q 008927 399 PF-TDIDN--IT--LGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQ 473 (548)
Q Consensus 399 ~~-~~~~~--~s--~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~pe~i~~~s~~dG~ 473 (548)
+. ..... .+ .+++.+++..++...|.++|.+|+++++. ++|+..+...+++..+ .+|.++|++. ||.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~------~~l~~~~~~~~~~~~~-~~e~v~~~s~-DG~ 427 (686)
T PRK10115 356 DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGER------RVLKQTEVPGFDAANY-RSEHLWITAR-DGV 427 (686)
T ss_pred CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcE------EEEEecCCCCcCcccc-EEEEEEEECC-CCC
Confidence 21 12222 22 45678999999999999999999988764 3444443344665555 8999999998 999
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChhhhhcc
Q 008927 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSI 546 (548)
Q Consensus 474 ~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~f~~ai 546 (548)
+|+++|++|++ .+ ..+++|+||++||||+.+..+.|++..|+|++|||+|+.+|+|||+|||++|+++.
T Consensus 428 ~Ip~~l~~~~~-~~---~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g 496 (686)
T PRK10115 428 EVPVSLVYHRK-HF---RKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDG 496 (686)
T ss_pred EEEEEEEEECC-CC---CCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhh
Confidence 99997665432 12 13567999999999999999999999999999999999999999999999999874
No 3
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=4.2e-24 Score=224.16 Aligned_cols=266 Identities=14% Similarity=0.209 Sum_probs=191.8
Q ss_pred CccCceEEcCCCcEEEEEecCCCC---CceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCE--EEEEeCC
Q 008927 89 KRLGGTAVDGHGRLIWLESRPTEA---GRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT--VIFSNYK 163 (548)
Q Consensus 89 ~~~~~~~~spg~~i~~~~~~~~e~---gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~--i~F~~~~ 163 (548)
+-.+++.+. +.+|+|+..+...+ .++.||.++.+| +++++||....... .+.|+|||+. ++|++.+
T Consensus 137 ~~tg~~g~~-~~~iayv~~~~~~~~~~~~~~l~~~d~dG-~~~~~lt~~~~~~~-------sP~wSPDG~~~~~~y~S~~ 207 (428)
T PRK01029 137 ALTGVPGIS-SGKIIFSLSTTNSDTELKQGELWSVDYDG-QNLRPLTQEHSLSI-------TPTWMHIGSGFPYLYVSYK 207 (428)
T ss_pred HHcCCCccc-cCEEEEEEeeCCcccccccceEEEEcCCC-CCceEcccCCCCcc-------cceEccCCCceEEEEEEcc
Confidence 456788888 99999997654322 367999998886 58999997532222 3589999986 6678766
Q ss_pred C--CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE--EECCCCCccCcEEe
Q 008927 164 D--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA--IALNGQNIQEPKVL 239 (548)
Q Consensus 164 ~--~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~--idl~~g~~~~~~~L 239 (548)
+ .+||++++++ ++.++|+... .....+.|||||++|+|+.+... ..+||+ ++++++.....++|
T Consensus 208 ~g~~~I~~~~l~~--g~~~~lt~~~----g~~~~p~wSPDG~~Laf~s~~~g------~~di~~~~~~~~~g~~g~~~~l 275 (428)
T PRK01029 208 LGVPKIFLGSLEN--PAGKKILALQ----GNQLMPTFSPRKKLLAFISDRYG------NPDLFIQSFSLETGAIGKPRRL 275 (428)
T ss_pred CCCceEEEEECCC--CCceEeecCC----CCccceEECCCCCEEEEEECCCC------CcceeEEEeecccCCCCcceEe
Confidence 5 4899999998 8899999863 22346899999999999864321 234665 46654311116778
Q ss_pred eecC-CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEE
Q 008927 240 VSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFV 317 (548)
Q Consensus 240 ~~~~-~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~ 317 (548)
+.+. .....|.|||||++|+|++... ...+||+++++..+. ..+.++... .....|.|||||+ |+|.
T Consensus 276 t~~~~~~~~~p~wSPDG~~Laf~s~~~-----g~~~ly~~~~~~~g~--~~~~lt~~~----~~~~~p~wSPDG~~Laf~ 344 (428)
T PRK01029 276 LNEAFGTQGNPSFSPDGTRLVFVSNKD-----GRPRIYIMQIDPEGQ--SPRLLTKKY----RNSSCPAWSPDGKKIAFC 344 (428)
T ss_pred ecCCCCCcCCeEECCCCCEEEEEECCC-----CCceEEEEECccccc--ceEEeccCC----CCccceeECCCCCEEEEE
Confidence 7553 3346799999999999987322 235899999864332 245555433 3457899999999 8888
Q ss_pred EeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeec
Q 008927 318 TDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 397 (548)
Q Consensus 318 sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~ 397 (548)
+.. .|..+|+++|+++++.+.|+........|. |+| |++.|+|.....+...||++|+++++.++|+
T Consensus 345 ~~~-~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~---------wSp---DG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 345 SVI-KGVRQICVYDLATGRDYQLTTSPENKESPS---------WAI---DSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred EcC-CCCcEEEEEECCCCCeEEccCCCCCccceE---------ECC---CCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 876 677899999999999988875432223344 443 7889998887778889999999999888887
Q ss_pred CC
Q 008927 398 IP 399 (548)
Q Consensus 398 ~~ 399 (548)
..
T Consensus 412 ~~ 413 (428)
T PRK01029 412 IG 413 (428)
T ss_pred cC
Confidence 53
No 4
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=2.2e-22 Score=211.23 Aligned_cols=246 Identities=15% Similarity=0.144 Sum_probs=176.3
Q ss_pred CCEEEEEeCC--------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCE--EEEEEeccCCCCCCceeEE
Q 008927 154 GDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR--YVTVREDRRQDALNSTTEI 223 (548)
Q Consensus 154 ~~~i~F~~~~--------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~--i~~v~~~~~~~~~~~~~~l 223 (548)
+.+|+|+... ..+||++|.+| +++++||... .....|.|||||+. ++|++... .+.+|
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG--~~~~~lt~~~----~~~~sP~wSPDG~~~~~~y~S~~~------g~~~I 213 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYDG--QNLRPLTQEH----SLSITPTWMHIGSGFPYLYVSYKL------GVPKI 213 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCCC--CCceEcccCC----CCcccceEccCCCceEEEEEEccC------CCceE
Confidence 7789999642 24899999998 8899999862 23567999999987 55675433 24689
Q ss_pred EEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEE--EecCCCceeeeEEEcCCCCCccc
Q 008927 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG--YISENGDVYKRVCVAGFDPTIVE 301 (548)
Q Consensus 224 ~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~--~~~~~g~~~~~~~l~~~~~~~~~ 301 (548)
|++++++|+ .++|+........|+|||||++|+|+.... ...++|+. +++. +.....+.++... . .
T Consensus 214 ~~~~l~~g~---~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~-----g~~di~~~~~~~~~-g~~g~~~~lt~~~-~--~ 281 (428)
T PRK01029 214 FLGSLENPA---GKKILALQGNQLMPTFSPRKKLLAFISDRY-----GNPDLFIQSFSLET-GAIGKPRRLLNEA-F--G 281 (428)
T ss_pred EEEECCCCC---ceEeecCCCCccceEECCCCCEEEEEECCC-----CCcceeEEEeeccc-CCCCcceEeecCC-C--C
Confidence 999999998 888886655556799999999999987322 23467775 4442 1111234444322 1 2
Q ss_pred CCcCceECcCCc-EEEEEeCCCCeeeEEEEecc--CCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC
Q 008927 302 SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIES--NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (548)
Q Consensus 302 ~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~--~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~ 378 (548)
....|.|||||+ |+|.+++ .|..+||+++++ +++.+.|+........|. |+| |++.|++....+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~-~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~---------wSP---DG~~Laf~~~~~ 348 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNK-DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPA---------WSP---DGKKIAFCSVIK 348 (428)
T ss_pred CcCCeEECCCCCEEEEEECC-CCCceEEEEECcccccceEEeccCCCCcccee---------ECC---CCCEEEEEEcCC
Confidence 346799999999 9999988 788899999875 345666764322223333 444 889999988777
Q ss_pred CeEEEEEEECCCCceEeecCCCceeE--eeeecCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 008927 379 GRSYLGILDDFGHSLSLLDIPFTDID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 437 (548)
Q Consensus 379 g~~~L~~~dl~~g~~~~l~~~~~~~~--~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~ 437 (548)
+..+|+++|+++|+.++|+....... .+++|++.|+|.... .....||++|+++++.+
T Consensus 349 g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 349 GVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGN-SNESELYLISLITKKTR 408 (428)
T ss_pred CCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECC-CCCceEEEEECCCCCEE
Confidence 88899999999999998875422222 347899999887764 34578999999888753
No 5
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1e-21 Score=207.78 Aligned_cols=242 Identities=14% Similarity=0.168 Sum_probs=181.4
Q ss_pred CCEEEEEeCCC------CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927 154 GDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (548)
Q Consensus 154 ~~~i~F~~~~~------~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id 227 (548)
+.+|+|+.+.. .+||++|.+| ..+++||... .....+.|||||++|+|++.... ..+||++|
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg--~~~~~lt~~~----~~v~~p~wSpDG~~lay~s~~~g------~~~i~~~d 232 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDG--ANVRYLTDGS----SLVLTPRFSPNRQEITYMSYANG------RPRVYLLD 232 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCC--CCcEEEecCC----CCeEeeEECCCCCEEEEEEecCC------CCEEEEEE
Confidence 45899987543 3899999988 7889999752 24567899999999999865432 36899999
Q ss_pred CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (548)
Q Consensus 228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ 307 (548)
+.+|+ .++|+...+....|.|||||++|+|..... ...+||++++++ ++ .+.++... .....+.
T Consensus 233 l~~g~---~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~-~~---~~~Lt~~~----~~~~~~~ 296 (435)
T PRK05137 233 LETGQ---RELVGNFPGMTFAPRFSPDGRKVVMSLSQG-----GNTDIYTMDLRS-GT---TTRLTDSP----AIDTSPS 296 (435)
T ss_pred CCCCc---EEEeecCCCcccCcEECCCCCEEEEEEecC-----CCceEEEEECCC-Cc---eEEccCCC----CccCcee
Confidence 99998 788876665566899999999999876322 246899999984 54 34455443 3456799
Q ss_pred ECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927 308 WSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (548)
Q Consensus 308 wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~ 386 (548)
|+|||+ |+|.+++ .|..+||++++++++.++|+........+. |+| |++.|++.....+..+|+++
T Consensus 297 ~spDG~~i~f~s~~-~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~---------~Sp---dG~~ia~~~~~~~~~~i~~~ 363 (435)
T PRK05137 297 YSPDGSQIVFESDR-SGSPQLYVMNADGSNPRRISFGGGRYSTPV---------WSP---RGDLIAFTKQGGGQFSIGVM 363 (435)
T ss_pred EcCCCCEEEEEECC-CCCCeEEEEECCCCCeEEeecCCCcccCeE---------ECC---CCCEEEEEEcCCCceEEEEE
Confidence 999999 9999988 778899999999888888875332222333 444 88999888766677899999
Q ss_pred ECCCCceEeecCCCcee-EeeeecCCEEEEEEecCCCC--CeEEEEEcCCCce
Q 008927 387 DDFGHSLSLLDIPFTDI-DNITLGNDCLFVEGASGVEP--SSVAKVTLDDHKL 436 (548)
Q Consensus 387 dl~~g~~~~l~~~~~~~-~~~s~d~~~l~~~~ss~~~p--~~l~~~d~~~~~~ 436 (548)
|++++..+.++.+.... -.+++|++.|+|........ ..||++|++++..
T Consensus 364 d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 364 KPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred ECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 99888777776543221 23478999999888654432 5899999977664
No 6
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=2.7e-21 Score=201.65 Aligned_cols=226 Identities=10% Similarity=0.083 Sum_probs=171.2
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCE-EEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR-YVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (548)
Q Consensus 165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~-i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~ 243 (548)
.+||++|.+| .++++++.. . ....+.|||||++ ++|++...+ ..+||++|+.+|+ .++|+...
T Consensus 169 ~~l~~~d~dg--~~~~~~~~~----~-~~~~p~wSpDG~~~i~y~s~~~~------~~~Iyv~dl~tg~---~~~lt~~~ 232 (419)
T PRK04043 169 SNIVLADYTL--TYQKVIVKG----G-LNIFPKWANKEQTAFYYTSYGER------KPTLYKYNLYTGK---KEKIASSQ 232 (419)
T ss_pred ceEEEECCCC--CceeEEccC----C-CeEeEEECCCCCcEEEEEEccCC------CCEEEEEECCCCc---EEEEecCC
Confidence 4999999998 778888875 2 3557899999997 555543321 3589999999998 88998766
Q ss_pred CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCC
Q 008927 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (548)
Q Consensus 244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~ 322 (548)
+....|.|||||++|+|..... ...+||++++++ |+ .+.++... .....+.|+|||+ |+|++++ .
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~dl~~-g~---~~~LT~~~----~~d~~p~~SPDG~~I~F~Sdr-~ 298 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPK-----GQPDIYLYDTNT-KT---LTQITNYP----GIDVNGNFVEDDKRIVFVSDR-L 298 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccC-----CCcEEEEEECCC-Cc---EEEcccCC----CccCccEECCCCCEEEEEECC-C
Confidence 6667799999999999987432 257999999974 54 34455433 3356789999999 9999998 7
Q ss_pred CeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC------CeEEEEEEECCCCceEee
Q 008927 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN------GRSYLGILDDFGHSLSLL 396 (548)
Q Consensus 323 g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~------g~~~L~~~dl~~g~~~~l 396 (548)
|..+||++++++|+.++++... .. . ..|+| |++.|+++.... +..+|+++|+++|+.++|
T Consensus 299 g~~~Iy~~dl~~g~~~rlt~~g-~~-~---------~~~SP---DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L 364 (419)
T PRK04043 299 GYPNIFMKKLNSGSVEQVVFHG-KN-N---------SSVST---YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL 364 (419)
T ss_pred CCceEEEEECCCCCeEeCccCC-Cc-C---------ceECC---CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC
Confidence 8899999999999998887421 11 1 23554 899999887653 447999999999999999
Q ss_pred cCCCce-eEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 397 DIPFTD-IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 397 ~~~~~~-~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
+..... .-.+++||+.|+|+... .....|+.+++++..
T Consensus 365 T~~~~~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 365 TANGVNQFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYNK 403 (419)
T ss_pred CCCCCcCCeEECCCCCEEEEEEcc-CCcEEEEEEecCCCe
Confidence 864322 23458999999998754 445679999997765
No 7
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=2.1e-21 Score=205.35 Aligned_cols=251 Identities=14% Similarity=0.150 Sum_probs=182.7
Q ss_pred CCcEEEEEecCCC-CCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCC--CCeEEEEeCCCC
Q 008927 99 HGRLIWLESRPTE-AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK--DQRLYKHSIDSK 175 (548)
Q Consensus 99 g~~i~~~~~~~~e-~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~--~~~Ly~~~~~~~ 175 (548)
+.+|+|+..+..+ .-+.+||.++.++ .++++||.....+. ..+|+|||+.|+|.+.. +.+||++++.+
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg-~~~~~lt~~~~~v~-------~p~wSpDG~~lay~s~~~g~~~i~~~dl~~- 235 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDG-ANVRYLTDGSSLVL-------TPRFSPNRQEITYMSYANGRPRVYLLDLET- 235 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCC-CCcEEEecCCCCeE-------eeEECCCCCEEEEEEecCCCCEEEEEECCC-
Confidence 6689999754221 1277999998775 57888886543322 35899999999999754 35899999987
Q ss_pred CCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCC
Q 008927 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG 255 (548)
Q Consensus 176 ~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDG 255 (548)
++.++|+... .....+.|||||++|+|..... ...+||++|+++++ .++|+........|.|||||
T Consensus 236 -g~~~~l~~~~----g~~~~~~~SPDG~~la~~~~~~------g~~~Iy~~d~~~~~---~~~Lt~~~~~~~~~~~spDG 301 (435)
T PRK05137 236 -GQRELVGNFP----GMTFAPRFSPDGRKVVMSLSQG------GNTDIYTMDLRSGT---TTRLTDSPAIDTSPSYSPDG 301 (435)
T ss_pred -CcEEEeecCC----CcccCcEECCCCCEEEEEEecC------CCceEEEEECCCCc---eEEccCCCCccCceeEcCCC
Confidence 7888888652 2345789999999999875432 13689999999998 88898766556679999999
Q ss_pred CEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccC
Q 008927 256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN 334 (548)
Q Consensus 256 k~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~ 334 (548)
++|+|.+.. . ...+||++++++ ++ .+.++... .....+.|||||+ |+|.+.. .+..+|+++++++
T Consensus 302 ~~i~f~s~~-~----g~~~Iy~~d~~g-~~---~~~lt~~~----~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~ 367 (435)
T PRK05137 302 SQIVFESDR-S----GSPQLYVMNADG-SN---PRRISFGG----GRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDG 367 (435)
T ss_pred CEEEEEECC-C----CCCeEEEEECCC-CC---eEEeecCC----CcccCeEECCCCCEEEEEEcC-CCceEEEEEECCC
Confidence 999998732 2 245899999873 44 33344322 3456799999999 8887755 5667899999987
Q ss_pred CeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCe---EEEEEEECCCCceEeecCC
Q 008927 335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR---SYLGILDDFGHSLSLLDIP 399 (548)
Q Consensus 335 g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~---~~L~~~dl~~g~~~~l~~~ 399 (548)
++.+.++.. .....|. |+| |++.|+|.....+. ..||++|++++..+.|..+
T Consensus 368 ~~~~~lt~~-~~~~~p~---------~sp---DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~ 422 (435)
T PRK05137 368 SGERILTSG-FLVEGPT---------WAP---NGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPTP 422 (435)
T ss_pred CceEeccCC-CCCCCCe---------ECC---CCCEEEEEEccCCCCCcceEEEEECCCCceEEccCC
Confidence 777666532 2223333 444 88899988776554 6899999988887777643
No 8
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=2.9e-21 Score=203.39 Aligned_cols=240 Identities=14% Similarity=0.150 Sum_probs=179.5
Q ss_pred CEEEEEeCCC-----CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927 155 DTVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (548)
Q Consensus 155 ~~i~F~~~~~-----~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~ 229 (548)
.+|+|+.... .+||++|.+| .++++||... .....+.|||||++|+|++... ...+||++|+.
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg--~~~~~lt~~~----~~~~~p~wSPDG~~la~~s~~~------g~~~i~i~dl~ 231 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRSP----QPLMSPAWSPDGSKLAYVTFES------GRSALVIQTLA 231 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCC--CCCEEeecCC----CceeeeEEcCCCCEEEEEEecC------CCcEEEEEECC
Confidence 5788886432 3899999998 7889998752 3467899999999999986432 23689999999
Q ss_pred CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (548)
Q Consensus 230 ~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws 309 (548)
+|+ .+.|+...+....|.|||||++|+|+.... ...+||++++++ ++ .+.++... .....+.|+
T Consensus 232 ~G~---~~~l~~~~~~~~~~~~SPDG~~La~~~~~~-----g~~~I~~~d~~t-g~---~~~lt~~~----~~~~~~~wS 295 (429)
T PRK03629 232 NGA---VRQVASFPRHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLAS-GQ---IRQVTDGR----SNNTEPTWF 295 (429)
T ss_pred CCC---eEEccCCCCCcCCeEECCCCCEEEEEEcCC-----CCcEEEEEECCC-CC---EEEccCCC----CCcCceEEC
Confidence 998 888876666667899999999999986432 235799999984 54 34455433 456789999
Q ss_pred cCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC
Q 008927 310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (548)
Q Consensus 310 pDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl 388 (548)
|||+ |+|.+++ .|..+||.+++++++.++++........ ..|+| |++.|++....++..+|+++|+
T Consensus 296 PDG~~I~f~s~~-~g~~~Iy~~d~~~g~~~~lt~~~~~~~~---------~~~Sp---DG~~Ia~~~~~~g~~~I~~~dl 362 (429)
T PRK03629 296 PDSQNLAYTSDQ-AGRPQVYKVNINGGAPQRITWEGSQNQD---------ADVSS---DGKFMVMVSSNGGQQHIAKQDL 362 (429)
T ss_pred CCCCEEEEEeCC-CCCceEEEEECCCCCeEEeecCCCCccC---------EEECC---CCCEEEEEEccCCCceEEEEEC
Confidence 9999 9999988 7788999999998888888632111111 33454 8899988877777789999999
Q ss_pred CCCceEeecCCCcee-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 389 FGHSLSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 389 ~~g~~~~l~~~~~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
++++.+.|+...... ..+++|++.|+|.... .....|++++++++..
T Consensus 363 ~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~-~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 363 ATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQ-GMGSVLNLVSTDGRFK 410 (429)
T ss_pred CCCCeEEeCCCCCCCCceECCCCCEEEEEEcC-CCceEEEEEECCCCCe
Confidence 999999888654222 2348899998887764 3345788889866553
No 9
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=4.4e-21 Score=202.01 Aligned_cols=250 Identities=12% Similarity=0.098 Sum_probs=184.8
Q ss_pred CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCC--CCeEEEEeCCCCC
Q 008927 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK--DQRLYKHSIDSKD 176 (548)
Q Consensus 99 g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~--~~~Ly~~~~~~~~ 176 (548)
.++|+|+..+..++.++.||.++.+| ++.++||.....+ ....|+|||+.|+|...+ +.+||++++++
T Consensus 163 ~~riayv~~~~~~~~~~~l~~~d~dg-~~~~~lt~~~~~~-------~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-- 232 (429)
T PRK03629 163 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPL-------MSPAWSPDGSKLAYVTFESGRSALVIQTLAN-- 232 (429)
T ss_pred CCeEEEEEeeCCCCcceeEEEEcCCC-CCCEEeecCCCce-------eeeEEcCCCCEEEEEEecCCCcEEEEEECCC--
Confidence 46899997654444578999998775 4788888643221 346899999999998644 35899999987
Q ss_pred CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCC
Q 008927 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (548)
Q Consensus 177 ~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk 256 (548)
++.++|+... .....+.|||||++|+|+..... ..+||++|+++++ .++++.+......|.|||||+
T Consensus 233 G~~~~l~~~~----~~~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~---~~~lt~~~~~~~~~~wSPDG~ 299 (429)
T PRK03629 233 GAVRQVASFP----RHNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPDSQ 299 (429)
T ss_pred CCeEEccCCC----CCcCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCC---EEEccCCCCCcCceEECCCCC
Confidence 8888998753 23457899999999999754321 2479999999998 888887665567899999999
Q ss_pred EEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC
Q 008927 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (548)
Q Consensus 257 ~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g 335 (548)
+|+|++.+. ...+||++++++ ++ .+.++... .....+.|+|||+ |+|.+.. .+..+||.+|++++
T Consensus 300 ~I~f~s~~~-----g~~~Iy~~d~~~-g~---~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g 365 (429)
T PRK03629 300 NLAYTSDQA-----GRPQVYKVNING-GA---PQRITWEG----SQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATG 365 (429)
T ss_pred EEEEEeCCC-----CCceEEEEECCC-CC---eEEeecCC----CCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCC
Confidence 999987322 135899999974 54 23343322 3456789999999 8887765 56678999999999
Q ss_pred eeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecC
Q 008927 336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (548)
Q Consensus 336 ~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~ 398 (548)
+.+.|+.. .....|. |+| |++.|++....++...|++++++++..+.|..
T Consensus 366 ~~~~Lt~~-~~~~~p~---------~Sp---DG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~ 415 (429)
T PRK03629 366 GVQVLTDT-FLDETPS---------IAP---NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 415 (429)
T ss_pred CeEEeCCC-CCCCCce---------ECC---CCCEEEEEEcCCCceEEEEEECCCCCeEECcc
Confidence 98888742 1112333 444 88899998887778889999997777777754
No 10
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=8.9e-21 Score=200.53 Aligned_cols=251 Identities=12% Similarity=0.138 Sum_probs=181.8
Q ss_pred CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC--CeEEEEeCCCCC
Q 008927 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (548)
Q Consensus 99 g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~--~~Ly~~~~~~~~ 176 (548)
..+|+|+.......-...|+.++.+| .+.+.||.....+ ....|+|||++|+|++.++ .+||++++++
T Consensus 182 ~~riayv~~~~~~~~~~~l~i~d~dG-~~~~~l~~~~~~~-------~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t-- 251 (448)
T PRK04792 182 LTRIAYVVVNDKDKYPYQLMIADYDG-YNEQMLLRSPEPL-------MSPAWSPDGRKLAYVSFENRKAEIFVQDIYT-- 251 (448)
T ss_pred cCEEEEEEeeCCCCCceEEEEEeCCC-CCceEeecCCCcc-------cCceECCCCCEEEEEEecCCCcEEEEEECCC--
Confidence 45788886544322357888887764 4677787653222 2358999999999987554 4899999988
Q ss_pred CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCC
Q 008927 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (548)
Q Consensus 177 ~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk 256 (548)
++.++|+... .....+.|||||+.|+|+.... ...+||++|+++++ .++|+........|.|||||+
T Consensus 252 g~~~~lt~~~----g~~~~~~wSPDG~~La~~~~~~------g~~~Iy~~dl~tg~---~~~lt~~~~~~~~p~wSpDG~ 318 (448)
T PRK04792 252 QVREKVTSFP----GINGAPRFSPDGKKLALVLSKD------GQPEIYVVDIATKA---LTRITRHRAIDTEPSWHPDGK 318 (448)
T ss_pred CCeEEecCCC----CCcCCeeECCCCCEEEEEEeCC------CCeEEEEEECCCCC---eEECccCCCCccceEECCCCC
Confidence 7888888652 2234689999999999875432 24689999999998 888887655567899999999
Q ss_pred EEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC
Q 008927 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (548)
Q Consensus 257 ~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g 335 (548)
+|+|.+... ...+||++++++ |+. +.++... .....+.|+|||+ |+|.+.. .+..+||++|++++
T Consensus 319 ~I~f~s~~~-----g~~~Iy~~dl~~-g~~---~~Lt~~g----~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g 384 (448)
T PRK04792 319 SLIFTSERG-----GKPQIYRVNLAS-GKV---SRLTFEG----EQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETG 384 (448)
T ss_pred EEEEEECCC-----CCceEEEEECCC-CCE---EEEecCC----CCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCC
Confidence 999987322 246899999974 542 3333221 2345689999999 8887766 67789999999999
Q ss_pred eeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC
Q 008927 336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 399 (548)
Q Consensus 336 ~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~ 399 (548)
+.+.|+....+ ..|. |.| +++.|++....++...|++++.+++..+.|+.+
T Consensus 385 ~~~~lt~~~~d-~~ps---------~sp---dG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~ 435 (448)
T PRK04792 385 AMQVLTSTRLD-ESPS---------VAP---NGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAG 435 (448)
T ss_pred CeEEccCCCCC-CCce---------ECC---CCCEEEEEEecCCceEEEEEECCCCceEECcCC
Confidence 88877743211 2233 333 889999998888889999999876666667654
No 11
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=4.1e-21 Score=200.37 Aligned_cols=246 Identities=10% Similarity=0.053 Sum_probs=178.3
Q ss_pred CcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCE-EEEEeCC--CCeEEEEeCCCCC
Q 008927 100 GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT-VIFSNYK--DQRLYKHSIDSKD 176 (548)
Q Consensus 100 ~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~-i~F~~~~--~~~Ly~~~~~~~~ 176 (548)
.+++|+.... ...+..||.++.+| .+++.++....+ -.+.|+|||++ ++|++.+ ..+||++++.+
T Consensus 155 ~r~~~v~~~~-~~~~~~l~~~d~dg-~~~~~~~~~~~~--------~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-- 222 (419)
T PRK04043 155 KRKVVFSKYT-GPKKSNIVLADYTL-TYQKVIVKGGLN--------IFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-- 222 (419)
T ss_pred eeEEEEEEcc-CCCcceEEEECCCC-CceeEEccCCCe--------EeEEECCCCCcEEEEEEccCCCCEEEEEECCC--
Confidence 4566664321 11378999998885 467878764311 13689999986 7776654 46999999988
Q ss_pred CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCC
Q 008927 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (548)
Q Consensus 177 ~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk 256 (548)
++.++|+... .....+.|||||++|+|+.... ...+||++|+++++ .++|+........|.|||||+
T Consensus 223 g~~~~lt~~~----g~~~~~~~SPDG~~la~~~~~~------g~~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~SPDG~ 289 (419)
T PRK04043 223 GKKEKIASSQ----GMLVVSDVSKDGSKLLLTMAPK------GQPDIYLYDTNTKT---LTQITNYPGIDVNGNFVEDDK 289 (419)
T ss_pred CcEEEEecCC----CcEEeeEECCCCCEEEEEEccC------CCcEEEEEECCCCc---EEEcccCCCccCccEECCCCC
Confidence 8899998752 2344578999999999986432 24689999999998 889987765556789999999
Q ss_pred EEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCC-----CeeeEEEE
Q 008927 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN-----GFWNLHKW 330 (548)
Q Consensus 257 ~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~-----g~~~Ly~~ 330 (548)
+|+|++.. . +..+||++++++ |+ .+.++... . ..+.|||||+ |+|++.... +..+||++
T Consensus 290 ~I~F~Sdr-~----g~~~Iy~~dl~~-g~---~~rlt~~g----~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 290 RIVFVSDR-L----GYPNIFMKKLNS-GS---VEQVVFHG----K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred EEEEEECC-C----CCceEEEEECCC-CC---eEeCccCC----C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 99999833 2 246899999984 54 22333221 2 2369999999 888865421 44789999
Q ss_pred eccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecC
Q 008927 331 IESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (548)
Q Consensus 331 d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~ 398 (548)
++++++.+.|+.... ...|. |+| ||+.|+|....++...|+.+++++.....|..
T Consensus 355 d~~~g~~~~LT~~~~-~~~p~---------~SP---DG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 355 STNSDYIRRLTANGV-NQFPR---------FSS---DGGSIMFIKYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred ECCCCCeEECCCCCC-cCCeE---------ECC---CCCEEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence 999999999985321 12343 444 88999999888888999999998766666654
No 12
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=1.6e-20 Score=197.84 Aligned_cols=248 Identities=15% Similarity=0.192 Sum_probs=179.6
Q ss_pred CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC--CeEEEEeCCCCC
Q 008927 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (548)
Q Consensus 99 g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~--~~Ly~~~~~~~~ 176 (548)
..+|+|+... .++..||.++.+| ..+++++.....+ ...+|+|||+.|+|.+.++ .+||++++.+
T Consensus 163 ~~~iayv~~~---~~~~~L~~~D~dG-~~~~~l~~~~~~v-------~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-- 229 (427)
T PRK02889 163 STRIAYVIKT---GNRYQLQISDADG-QNAQSALSSPEPI-------ISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-- 229 (427)
T ss_pred ccEEEEEEcc---CCccEEEEECCCC-CCceEeccCCCCc-------ccceEcCCCCEEEEEEccCCCcEEEEEECCC--
Confidence 4578888632 4678899888764 4677887543222 2458999999999998654 4799999987
Q ss_pred CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCC
Q 008927 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (548)
Q Consensus 177 ~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk 256 (548)
++.++|+... .....+.|||||+.|+|..... ...+||.+|+.++. .++|+........|.|||||+
T Consensus 230 g~~~~l~~~~----g~~~~~~~SPDG~~la~~~~~~------g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~ 296 (427)
T PRK02889 230 GRRRVVANFK----GSNSAPAWSPDGRTLAVALSRD------GNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSPDGR 296 (427)
T ss_pred CCEEEeecCC----CCccceEECCCCCEEEEEEccC------CCceEEEEECCCCC---cEECCCCCCCCcCeEEcCCCC
Confidence 7788887652 2345789999999999865432 23689999999988 888887655556789999999
Q ss_pred EEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC
Q 008927 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (548)
Q Consensus 257 ~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g 335 (548)
+|+|++ +.. ...+||++++++ +. .+.++... .....+.|||||+ |+|.+.. .+..+|++++++++
T Consensus 297 ~l~f~s-~~~----g~~~Iy~~~~~~-g~---~~~lt~~g----~~~~~~~~SpDG~~Ia~~s~~-~g~~~I~v~d~~~g 362 (427)
T PRK02889 297 SIYFTS-DRG----GAPQIYRMPASG-GA---AQRVTFTG----SYNTSPRISPDGKLLAYISRV-GGAFKLYVQDLATG 362 (427)
T ss_pred EEEEEe-cCC----CCcEEEEEECCC-Cc---eEEEecCC----CCcCceEECCCCCEEEEEEcc-CCcEEEEEEECCCC
Confidence 999986 322 245899999873 43 22233221 2345789999999 8888766 56679999999999
Q ss_pred eeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC
Q 008927 336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 399 (548)
Q Consensus 336 ~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~ 399 (548)
+.+.++.... ...|. |.| |++.|++....+|...|+.+++++...+.+..+
T Consensus 363 ~~~~lt~~~~-~~~p~---------~sp---dg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~ 413 (427)
T PRK02889 363 QVTALTDTTR-DESPS---------FAP---NGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQ 413 (427)
T ss_pred CeEEccCCCC-ccCce---------ECC---CCCEEEEEEecCCCEEEEEEECCCCceEEeecC
Confidence 8888874321 12333 444 889999999888999999999965555566544
No 13
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=2.3e-20 Score=197.42 Aligned_cols=239 Identities=15% Similarity=0.183 Sum_probs=176.0
Q ss_pred CEEEEEeCCC-----CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927 155 DTVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (548)
Q Consensus 155 ~~i~F~~~~~-----~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~ 229 (548)
.+|+|+.... .+||++|.+| .+.+.||... .....+.|||||++|+|++... ...+||++|+.
T Consensus 183 ~riayv~~~~~~~~~~~l~i~d~dG--~~~~~l~~~~----~~~~~p~wSPDG~~La~~s~~~------g~~~L~~~dl~ 250 (448)
T PRK04792 183 TRIAYVVVNDKDKYPYQLMIADYDG--YNEQMLLRSP----EPLMSPAWSPDGRKLAYVSFEN------RKAEIFVQDIY 250 (448)
T ss_pred CEEEEEEeeCCCCCceEEEEEeCCC--CCceEeecCC----CcccCceECCCCCEEEEEEecC------CCcEEEEEECC
Confidence 3677775432 3899999987 7788898762 3567889999999999986542 24689999999
Q ss_pred CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (548)
Q Consensus 230 ~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws 309 (548)
+++ .++++...+....|.|||||++|+|+.... ...+||++++++ ++ .+.++... .....|.|+
T Consensus 251 tg~---~~~lt~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~dl~t-g~---~~~lt~~~----~~~~~p~wS 314 (448)
T PRK04792 251 TQV---REKVTSFPGINGAPRFSPDGKKLALVLSKD-----GQPEIYVVDIAT-KA---LTRITRHR----AIDTEPSWH 314 (448)
T ss_pred CCC---eEEecCCCCCcCCeeECCCCCEEEEEEeCC-----CCeEEEEEECCC-CC---eEECccCC----CCccceEEC
Confidence 998 778876555556799999999999876332 246899999984 54 33444432 345679999
Q ss_pred cCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC
Q 008927 310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (548)
Q Consensus 310 pDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl 388 (548)
|||+ |+|.+++ .|..+||++++++++.++|+........+ .|+| |++.|++....++..+|+++|+
T Consensus 315 pDG~~I~f~s~~-~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~---------~~Sp---DG~~l~~~~~~~g~~~I~~~dl 381 (448)
T PRK04792 315 PDGKSLIFTSER-GGKPQIYRVNLASGKVSRLTFEGEQNLGG---------SITP---DGRSMIMVNRTNGKFNIARQDL 381 (448)
T ss_pred CCCCEEEEEECC-CCCceEEEEECCCCCEEEEecCCCCCcCe---------eECC---CCCEEEEEEecCCceEEEEEEC
Confidence 9999 9999988 77789999999999988886321111112 3444 8889998877777889999999
Q ss_pred CCCceEeecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 389 FGHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 389 ~~g~~~~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
++++.+.|+....+.. .+++|++.|+|.... .....||+++.+++.
T Consensus 382 ~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~-~g~~~l~~~~~~G~~ 428 (448)
T PRK04792 382 ETGAMQVLTSTRLDESPSVAPNGTMVIYSTTY-QGKQVLAAVSIDGRF 428 (448)
T ss_pred CCCCeEEccCCCCCCCceECCCCCEEEEEEec-CCceEEEEEECCCCc
Confidence 9999888875432222 358899999887754 334579999986554
No 14
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=3.5e-20 Score=195.86 Aligned_cols=251 Identities=14% Similarity=0.141 Sum_probs=182.1
Q ss_pred CCcEEEEEecC-CCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC--CeEEEEeCCCC
Q 008927 99 HGRLIWLESRP-TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSK 175 (548)
Q Consensus 99 g~~i~~~~~~~-~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~--~~Ly~~~~~~~ 175 (548)
+.+|+|+.... ..+.+..||.++.++ +++++||.....+ ....|+|||+.|+|.+..+ .+||++++++
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g-~~~~~lt~~~~~v-------~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~- 237 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDG-YNPQTILRSAEPI-------LSPAWSPDGKKLAYVSFERGRSAIYVQDLAT- 237 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCC-CCceEeecCCCcc-------ccccCCCCCCEEEEEecCCCCcEEEEEECCC-
Confidence 66898986543 223467898888764 5788888653222 2458999999999997554 4899999987
Q ss_pred CCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCC
Q 008927 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG 255 (548)
Q Consensus 176 ~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDG 255 (548)
++.++|+... .....+.|||||++|+|+....+ ..+||++|+++++ .++++........|.|||||
T Consensus 238 -g~~~~l~~~~----g~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~spDG 303 (433)
T PRK04922 238 -GQRELVASFR----GINGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQ---LTRLTNHFGIDTEPTWAPDG 303 (433)
T ss_pred -CCEEEeccCC----CCccCceECCCCCEEEEEEeCCC------CceEEEEECCCCC---eEECccCCCCccceEECCCC
Confidence 7788887652 23446899999999998754331 3589999999998 88888665445678999999
Q ss_pred CEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccC
Q 008927 256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN 334 (548)
Q Consensus 256 k~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~ 334 (548)
++|+|.+. .. ...+||++++++ ++ .+.++... .....+.|||||+ |+|.+.. .+..+|+.+++.+
T Consensus 304 ~~l~f~sd-~~----g~~~iy~~dl~~-g~---~~~lt~~g----~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~ 369 (433)
T PRK04922 304 KSIYFTSD-RG----GRPQIYRVAASG-GS---AERLTFQG----NYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLST 369 (433)
T ss_pred CEEEEEEC-CC----CCceEEEEECCC-CC---eEEeecCC----CCccCEEECCCCCEEEEEECC-CCceeEEEEECCC
Confidence 99999873 22 135899999874 54 22333222 2345799999999 8887655 5667999999999
Q ss_pred CeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC
Q 008927 335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 399 (548)
Q Consensus 335 g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~ 399 (548)
++.+.|+.... ...|. |+| |++.|++.....+...||.++++++..+.|+.+
T Consensus 370 g~~~~Lt~~~~-~~~p~---------~sp---dG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~ 421 (433)
T PRK04922 370 GSVRTLTPGSL-DESPS---------FAP---NGSMVLYATREGGRGVLAAVSTDGRVRQRLVSA 421 (433)
T ss_pred CCeEECCCCCC-CCCce---------ECC---CCCEEEEEEecCCceEEEEEECCCCceEEcccC
Confidence 98888874321 12233 443 888999998888889999999987777777653
No 15
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=3.5e-20 Score=196.06 Aligned_cols=251 Identities=13% Similarity=0.187 Sum_probs=182.1
Q ss_pred CCcEEEEEecC-CCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC--CeEEEEeCCCC
Q 008927 99 HGRLIWLESRP-TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSK 175 (548)
Q Consensus 99 g~~i~~~~~~~-~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~--~~Ly~~~~~~~ 175 (548)
..+|+|+.... .++++..|+.++.+| +++++++.....+ ....|+|||+.|+|++.++ .+||++++++
T Consensus 162 ~~~ia~v~~~~~~~~~~~~l~~~d~~g-~~~~~l~~~~~~~-------~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~- 232 (430)
T PRK00178 162 STRILYVTAERFSVNTRYTLQRSDYDG-ARAVTLLQSREPI-------LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT- 232 (430)
T ss_pred eeeEEEEEeeCCCCCcceEEEEECCCC-CCceEEecCCCce-------eeeeECCCCCEEEEEEcCCCCCEEEEEECCC-
Confidence 56788886433 234577898888774 4677787543221 2357999999999997654 4899999998
Q ss_pred CCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCC
Q 008927 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG 255 (548)
Q Consensus 176 ~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDG 255 (548)
++.++|+... .....+.|||||++|+|.....+ ..+||++|+++++ .++|+........|.|||||
T Consensus 233 -g~~~~l~~~~----g~~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~~spDg 298 (430)
T PRK00178 233 -GRREQITNFE----GLNGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQ---LSRVTNHPAIDTEPFWGKDG 298 (430)
T ss_pred -CCEEEccCCC----CCcCCeEECCCCCEEEEEEccCC------CceEEEEECCCCC---eEEcccCCCCcCCeEECCCC
Confidence 7888888652 23446899999999998754321 3689999999998 78888765556679999999
Q ss_pred CEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccC
Q 008927 256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN 334 (548)
Q Consensus 256 k~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~ 334 (548)
++|+|.+. .. ...+||++++++ |+. +.++... .....+.|+|||+ |+|.+.. .+..+|+++|+++
T Consensus 299 ~~i~f~s~-~~----g~~~iy~~d~~~-g~~---~~lt~~~----~~~~~~~~Spdg~~i~~~~~~-~~~~~l~~~dl~t 364 (430)
T PRK00178 299 RTLYFTSD-RG----GKPQIYKVNVNG-GRA---ERVTFVG----NYNARPRLSADGKTLVMVHRQ-DGNFHVAAQDLQR 364 (430)
T ss_pred CEEEEEEC-CC----CCceEEEEECCC-CCE---EEeecCC----CCccceEECCCCCEEEEEEcc-CCceEEEEEECCC
Confidence 99999863 22 135899999874 542 2233221 2345789999999 8887765 5677899999999
Q ss_pred CeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC
Q 008927 335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 399 (548)
Q Consensus 335 g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~ 399 (548)
++.+.|+....+ ..|. |+| |++.|+|+...+++..|+.++++++..+.|..+
T Consensus 365 g~~~~lt~~~~~-~~p~---------~sp---dg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~ 416 (430)
T PRK00178 365 GSVRILTDTSLD-ESPS---------VAP---NGTMLIYATRQQGRGVLMLVSINGRVRLPLPTA 416 (430)
T ss_pred CCEEEccCCCCC-CCce---------ECC---CCCEEEEEEecCCceEEEEEECCCCceEECcCC
Confidence 988888743221 2233 443 889999998888999999999976666666543
No 16
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=5.8e-20 Score=193.64 Aligned_cols=239 Identities=15% Similarity=0.143 Sum_probs=175.6
Q ss_pred CEEEEEeCCC--CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927 155 DTVIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (548)
Q Consensus 155 ~~i~F~~~~~--~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~ 232 (548)
.+|+|..... .+||++|.+| ..+++++... .....+.|||||++|+|++... ...+||++|+.+|+
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG--~~~~~l~~~~----~~v~~p~wSPDG~~la~~s~~~------~~~~I~~~dl~~g~ 231 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADG--QNAQSALSSP----EPIISPAWSPDGTKLAYVSFES------KKPVVYVHDLATGR 231 (427)
T ss_pred cEEEEEEccCCccEEEEECCCC--CCceEeccCC----CCcccceEcCCCCEEEEEEccC------CCcEEEEEECCCCC
Confidence 5788887543 4899999987 7788887652 3466889999999999985432 23579999999998
Q ss_pred ccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927 233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (548)
Q Consensus 233 ~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG 312 (548)
.++++...+....|.|||||++|+|..... ...+||+++++. +. .+.++... .....+.|+|||
T Consensus 232 ---~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~-~~---~~~lt~~~----~~~~~~~wSpDG 295 (427)
T PRK02889 232 ---RRVVANFKGSNSAPAWSPDGRTLAVALSRD-----GNSQIYTVNADG-SG---LRRLTQSS----GIDTEPFFSPDG 295 (427)
T ss_pred ---EEEeecCCCCccceEECCCCCEEEEEEccC-----CCceEEEEECCC-CC---cEECCCCC----CCCcCeEEcCCC
Confidence 778875555567899999999999876322 246899999873 43 34454432 345678999999
Q ss_pred c-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCC
Q 008927 313 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (548)
Q Consensus 313 ~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g 391 (548)
+ |+|.+++ .|..+||.+++++++.++++........+ .|+| |++.|++....++..+|+++|++++
T Consensus 296 ~~l~f~s~~-~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~---------~~Sp---DG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 296 RSIYFTSDR-GGAPQIYRMPASGGAAQRVTFTGSYNTSP---------RISP---DGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CEEEEEecC-CCCcEEEEEECCCCceEEEecCCCCcCce---------EECC---CCCEEEEEEccCCcEEEEEEECCCC
Confidence 9 9999988 77889999999888887776321111122 3444 8899998877777789999999999
Q ss_pred ceEeecCCCce-eEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 392 SLSLLDIPFTD-IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 392 ~~~~l~~~~~~-~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
+.+.|+..... .-.+++|++.|+|..... ....||.+++++..
T Consensus 363 ~~~~lt~~~~~~~p~~spdg~~l~~~~~~~-g~~~l~~~~~~g~~ 406 (427)
T PRK02889 363 QVTALTDTTRDESPSFAPNGRYILYATQQG-GRSVLAAVSSDGRI 406 (427)
T ss_pred CeEEccCCCCccCceECCCCCEEEEEEecC-CCEEEEEEECCCCc
Confidence 98888754222 223478999998887654 34679999985443
No 17
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=4e-20 Score=195.62 Aligned_cols=240 Identities=15% Similarity=0.212 Sum_probs=176.3
Q ss_pred CCEEEEEeCCC------CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927 154 GDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (548)
Q Consensus 154 ~~~i~F~~~~~------~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id 227 (548)
..+|+|+.... .+||++|.+| +.+++|+... .....+.|||||++|+|++.+. ...+||++|
T Consensus 162 ~~~ia~v~~~~~~~~~~~~l~~~d~~g--~~~~~l~~~~----~~~~~p~wSpDG~~la~~s~~~------~~~~l~~~~ 229 (430)
T PRK00178 162 STRILYVTAERFSVNTRYTLQRSDYDG--ARAVTLLQSR----EPILSPRWSPDGKRIAYVSFEQ------KRPRIFVQN 229 (430)
T ss_pred eeeEEEEEeeCCCCCcceEEEEECCCC--CCceEEecCC----CceeeeeECCCCCEEEEEEcCC------CCCEEEEEE
Confidence 34688875321 2699999997 7788887652 3456789999999999986432 246899999
Q ss_pred CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (548)
Q Consensus 228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ 307 (548)
+++|+ .++|+...+....|.|||||++|+|..... ...+||++++++ ++ .+.++... .....|.
T Consensus 230 l~~g~---~~~l~~~~g~~~~~~~SpDG~~la~~~~~~-----g~~~Iy~~d~~~-~~---~~~lt~~~----~~~~~~~ 293 (430)
T PRK00178 230 LDTGR---REQITNFEGLNGAPAWSPDGSKLAFVLSKD-----GNPEIYVMDLAS-RQ---LSRVTNHP----AIDTEPF 293 (430)
T ss_pred CCCCC---EEEccCCCCCcCCeEECCCCCEEEEEEccC-----CCceEEEEECCC-CC---eEEcccCC----CCcCCeE
Confidence 99998 788876555556799999999999876332 246899999984 54 34455433 3456789
Q ss_pred ECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927 308 WSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (548)
Q Consensus 308 wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~ 386 (548)
|+|||+ |+|.+++ .|..+||.+++++++.++++........+ .|+| |++.|++....++..+|+++
T Consensus 294 ~spDg~~i~f~s~~-~g~~~iy~~d~~~g~~~~lt~~~~~~~~~---------~~Sp---dg~~i~~~~~~~~~~~l~~~ 360 (430)
T PRK00178 294 WGKDGRTLYFTSDR-GGKPQIYKVNVNGGRAERVTFVGNYNARP---------RLSA---DGKTLVMVHRQDGNFHVAAQ 360 (430)
T ss_pred ECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCccce---------EECC---CCCEEEEEEccCCceEEEEE
Confidence 999999 9999988 78889999999999888886321111112 3444 88999988777777889999
Q ss_pred ECCCCceEeecCCCcee-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 387 DDFGHSLSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 387 dl~~g~~~~l~~~~~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
|+++++.+.|+....+. ..+++|++.++|..... ....||.++++++.
T Consensus 361 dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~-g~~~l~~~~~~g~~ 409 (430)
T PRK00178 361 DLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQ-GRGVLMLVSINGRV 409 (430)
T ss_pred ECCCCCEEEccCCCCCCCceECCCCCEEEEEEecC-CceEEEEEECCCCc
Confidence 99999988887543222 23588999888877543 34679999986554
No 18
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=4.3e-20 Score=195.13 Aligned_cols=240 Identities=16% Similarity=0.180 Sum_probs=177.0
Q ss_pred CCEEEEEeCC------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927 154 GDTVIFSNYK------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (548)
Q Consensus 154 ~~~i~F~~~~------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id 227 (548)
+.+|+|+... ..+||++|.++ .++++||... .....+.|||||+.|+|++... ...+||++|
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g--~~~~~lt~~~----~~v~~p~wSpDg~~la~~s~~~------~~~~l~~~d 234 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDG--YNPQTILRSA----EPILSPAWSPDGKKLAYVSFER------GRSAIYVQD 234 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCC--CCceEeecCC----CccccccCCCCCCEEEEEecCC------CCcEEEEEE
Confidence 3468887532 13799999987 7889998762 3467889999999999986432 236899999
Q ss_pred CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (548)
Q Consensus 228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ 307 (548)
+.+++ .++++........|+|||||++|+|..... ...+||++++++ |+ .+.++... .....+.
T Consensus 235 l~~g~---~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~-----g~~~Iy~~d~~~-g~---~~~lt~~~----~~~~~~~ 298 (433)
T PRK04922 235 LATGQ---RELVASFRGINGAPSFSPDGRRLALTLSRD-----GNPEIYVMDLGS-RQ---LTRLTNHF----GIDTEPT 298 (433)
T ss_pred CCCCC---EEEeccCCCCccCceECCCCCEEEEEEeCC-----CCceEEEEECCC-CC---eEECccCC----CCccceE
Confidence 99998 777876555556899999999999876432 246899999984 54 34454432 3346789
Q ss_pred ECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927 308 WSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (548)
Q Consensus 308 wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~ 386 (548)
|+|||+ |+|.+++ .|..+||.+++++++.++++........ ..|+| |++.|++....++..+|+++
T Consensus 299 ~spDG~~l~f~sd~-~g~~~iy~~dl~~g~~~~lt~~g~~~~~---------~~~Sp---DG~~Ia~~~~~~~~~~I~v~ 365 (433)
T PRK04922 299 WAPDGKSIYFTSDR-GGRPQIYRVAASGGSAERLTFQGNYNAR---------ASVSP---DGKKIAMVHGSGGQYRIAVM 365 (433)
T ss_pred ECCCCCEEEEEECC-CCCceEEEEECCCCCeEEeecCCCCccC---------EEECC---CCCEEEEEECCCCceeEEEE
Confidence 999999 9999988 7778999999988888888742211112 23444 88999887766677899999
Q ss_pred ECCCCceEeecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 387 DDFGHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 387 dl~~g~~~~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
|+++++.+.|+....... .+++|++.++|.... .....||.++++++.
T Consensus 366 d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~-~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 366 DLSTGSVRTLTPGSLDESPSFAPNGSMVLYATRE-GGRGVLAAVSTDGRV 414 (433)
T ss_pred ECCCCCeEECCCCCCCCCceECCCCCEEEEEEec-CCceEEEEEECCCCc
Confidence 999999888875432222 347899999888765 345689999987655
No 19
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=1.9e-17 Score=174.68 Aligned_cols=243 Identities=15% Similarity=0.142 Sum_probs=170.8
Q ss_pred CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC--CeEEEEeCCCCC
Q 008927 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (548)
Q Consensus 99 g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~--~~Ly~~~~~~~~ 176 (548)
+.+|+|+..+..+.....|+.++.+| .+.+.|+.....+ ....|+|||+.|+|.+..+ .+||++++.+
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg-~~~~~lt~~~~~v-------~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t-- 237 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDG-FNQFIVNRSSQPL-------MSPAWSPDGSKLAYVSFENKKSQLVVHDLRS-- 237 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCC-CCceEeccCCCcc-------ccceEcCCCCEEEEEEecCCCcEEEEEeCCC--
Confidence 77899997665433357888888774 4677777543222 2458999999999987543 4899999987
Q ss_pred CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCC
Q 008927 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (548)
Q Consensus 177 ~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk 256 (548)
++.++++... .....+.|||||++|++.....+ ..+||.+|+++++ .++|+.+......|.|||||+
T Consensus 238 g~~~~l~~~~----g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~ 304 (429)
T PRK01742 238 GARKVVASFR----GHNGAPAFSPDGSRLAFASSKDG------VLNIYVMGANGGT---PSQLTSGAGNNTEPSWSPDGQ 304 (429)
T ss_pred CceEEEecCC----CccCceeECCCCCEEEEEEecCC------cEEEEEEECCCCC---eEeeccCCCCcCCEEECCCCC
Confidence 7777887652 22346899999999999754321 2579999999998 888887665667899999999
Q ss_pred EEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC
Q 008927 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (548)
Q Consensus 257 ~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g 335 (548)
+|+|.+.. . ...+||.++..+ +. .+.+.. .. ..+.|+|||+ |++.+. .+++++|+.++
T Consensus 305 ~i~f~s~~-~----g~~~I~~~~~~~-~~---~~~l~~------~~-~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g 363 (429)
T PRK01742 305 SILFTSDR-S----GSPQVYRMSASG-GG---ASLVGG------RG-YSAQISADGKTLVMING-----DNVVKQDLTSG 363 (429)
T ss_pred EEEEEECC-C----CCceEEEEECCC-CC---eEEecC------CC-CCccCCCCCCEEEEEcC-----CCEEEEECCCC
Confidence 99998732 2 135899988763 32 233422 12 4578999999 777653 25888999888
Q ss_pred eeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecC
Q 008927 336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (548)
Q Consensus 336 ~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~ 398 (548)
+.+.++.. .+...|. |.| +++.|++...+++...+++++.+++..+.|..
T Consensus 364 ~~~~lt~~-~~~~~~~---------~sP---dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 364 STEVLSST-FLDESPS---------ISP---NGIMIIYSSTQGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred CeEEecCC-CCCCCce---------ECC---CCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence 87777632 1222233 444 78888888776667777888876666677753
No 20
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=2.3e-17 Score=174.06 Aligned_cols=233 Identities=15% Similarity=0.174 Sum_probs=163.9
Q ss_pred CCEEEEEeCC-----CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 154 GDTVIFSNYK-----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 154 ~~~i~F~~~~-----~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
+.+|+|+..+ +.+||+.|.+| ...+.||... .....+.|||||++|+|++.+. ...+||++|+
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg--~~~~~lt~~~----~~v~~p~wSPDG~~la~~s~~~------~~~~i~i~dl 235 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDG--FNQFIVNRSS----QPLMSPAWSPDGSKLAYVSFEN------KKSQLVVHDL 235 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCC--CCceEeccCC----CccccceEcCCCCEEEEEEecC------CCcEEEEEeC
Confidence 4589898643 24899999998 6778888752 3467899999999999986432 2368999999
Q ss_pred CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (548)
Q Consensus 229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w 308 (548)
.+++ .+++....+....++|||||++|+|..... ...+||++++++ +. .+.++... .....+.|
T Consensus 236 ~tg~---~~~l~~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~d~~~-~~---~~~lt~~~----~~~~~~~w 299 (429)
T PRK01742 236 RSGA---RKVVASFRGHNGAPAFSPDGSRLAFASSKD-----GVLNIYVMGANG-GT---PSQLTSGA----GNNTEPSW 299 (429)
T ss_pred CCCc---eEEEecCCCccCceeECCCCCEEEEEEecC-----CcEEEEEEECCC-CC---eEeeccCC----CCcCCEEE
Confidence 9998 777775555556799999999999876322 135799999873 43 34455543 45678999
Q ss_pred CcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927 309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (548)
Q Consensus 309 spDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d 387 (548)
+|||+ |+|.+++ .|..+||.++..+++.+.+... . ..+ .|+| |++.|++... ..++.+|
T Consensus 300 SpDG~~i~f~s~~-~g~~~I~~~~~~~~~~~~l~~~-~--~~~---------~~Sp---DG~~ia~~~~----~~i~~~D 359 (429)
T PRK01742 300 SPDGQSILFTSDR-SGSPQVYRMSASGGGASLVGGR-G--YSA---------QISA---DGKTLVMING----DNVVKQD 359 (429)
T ss_pred CCCCCEEEEEECC-CCCceEEEEECCCCCeEEecCC-C--CCc---------cCCC---CCCEEEEEcC----CCEEEEE
Confidence 99999 9999988 7889999999877766655311 1 112 2343 7888877643 3577899
Q ss_pred CCCCceEeecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 388 DFGHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 388 l~~g~~~~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
+.+|+.+.++....... .+++|++.|++.... .....+++++.++..
T Consensus 360 l~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~-g~~~~l~~~~~~G~~ 407 (429)
T PRK01742 360 LTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQ-GLGKVLQLVSADGRF 407 (429)
T ss_pred CCCCCeEEecCCCCCCCceECCCCCEEEEEEcC-CCceEEEEEECCCCc
Confidence 99998887764432211 347888888877643 333455666765544
No 21
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.80 E-value=3e-17 Score=173.00 Aligned_cols=250 Identities=15% Similarity=0.229 Sum_probs=177.3
Q ss_pred CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC--CeEEEEeCCCCC
Q 008927 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (548)
Q Consensus 99 g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~--~~Ly~~~~~~~~ 176 (548)
+++++|+..+. .+++..|+.++.++ ++.++|+.....+ ....|++||+.|+|....+ .+||++++.+
T Consensus 155 ~~~~~~~~~~~-~~~~~~l~~~d~~g-~~~~~l~~~~~~~-------~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-- 223 (417)
T TIGR02800 155 STRIAYVSKSG-KSRRYELQVADYDG-ANPQTITRSREPI-------LSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-- 223 (417)
T ss_pred CCEEEEEEEeC-CCCcceEEEEcCCC-CCCEEeecCCCce-------ecccCCCCCCEEEEEEcCCCCcEEEEEECCC--
Confidence 78899997654 35688898887764 4688887543222 2347999999999987544 5899999987
Q ss_pred CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCC
Q 008927 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (548)
Q Consensus 177 ~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk 256 (548)
++.+.++... .....+.|+|||+.|+|..... ...+||.+|+.+++ .+.|+........|.|+|||+
T Consensus 224 g~~~~~~~~~----~~~~~~~~spDg~~l~~~~~~~------~~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~s~dg~ 290 (417)
T TIGR02800 224 GQREKVASFP----GMNGAPAFSPDGSKLAVSLSKD------GNPDIYVMDLDGKQ---LTRLTNGPGIDTEPSWSPDGK 290 (417)
T ss_pred CCEEEeecCC----CCccceEECCCCCEEEEEECCC------CCccEEEEECCCCC---EEECCCCCCCCCCEEECCCCC
Confidence 6667776542 1234578999999998874432 13589999999988 778876554456789999999
Q ss_pred EEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC
Q 008927 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (548)
Q Consensus 257 ~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g 335 (548)
+|+|.+.. . ...+||++++++ ++ .+.+.... .....+.|+|||+ |++.... .+..+|+.++++++
T Consensus 291 ~l~~~s~~-~----g~~~iy~~d~~~-~~---~~~l~~~~----~~~~~~~~spdg~~i~~~~~~-~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 291 SIAFTSDR-G----GSPQIYMMDADG-GE---VRRLTFRG----GYNASPSWSPDGDLIAFVHRE-GGGFNIAVMDLDGG 356 (417)
T ss_pred EEEEEECC-C----CCceEEEEECCC-CC---EEEeecCC----CCccCeEECCCCCEEEEEEcc-CCceEEEEEeCCCC
Confidence 99988732 2 134899999874 44 23343322 3456789999999 6666554 57789999999888
Q ss_pred eeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC
Q 008927 336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 399 (548)
Q Consensus 336 ~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~ 399 (548)
..+.++... ....|. |.| +++.|++....++...|++++.+++..+.++.+
T Consensus 357 ~~~~l~~~~-~~~~p~---------~sp---dg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~ 407 (417)
T TIGR02800 357 GERVLTDTG-LDESPS---------FAP---NGRMILYATTRGGRGVLGLVSTDGRFRARLPLG 407 (417)
T ss_pred CeEEccCCC-CCCCce---------ECC---CCCEEEEEEeCCCcEEEEEEECCCceeeECCCC
Confidence 777665321 112222 343 788999998888888899988776666666654
No 22
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.80 E-value=3.5e-17 Score=172.49 Aligned_cols=240 Identities=17% Similarity=0.178 Sum_probs=170.9
Q ss_pred CCEEEEEeCC----CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927 154 GDTVIFSNYK----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (548)
Q Consensus 154 ~~~i~F~~~~----~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~ 229 (548)
+.+|+|.... ..+||+++.++ .++++|+... .....+.|||||++|+|+.... ....|+++|+.
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~d~~g--~~~~~l~~~~----~~~~~p~~Spdg~~la~~~~~~------~~~~i~v~d~~ 222 (417)
T TIGR02800 155 STRIAYVSKSGKSRRYELQVADYDG--ANPQTITRSR----EPILSPAWSPDGQKLAYVSFES------GKPEIYVQDLA 222 (417)
T ss_pred CCEEEEEEEeCCCCcceEEEEcCCC--CCCEEeecCC----CceecccCCCCCCEEEEEEcCC------CCcEEEEEECC
Confidence 5678888643 23799999987 7788888752 2355778999999999985432 13689999999
Q ss_pred CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (548)
Q Consensus 230 ~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws 309 (548)
+++ .+.+.........+.|||||++|+|..... ...+||++++++ +. .+.++... .....+.|+
T Consensus 223 ~g~---~~~~~~~~~~~~~~~~spDg~~l~~~~~~~-----~~~~i~~~d~~~-~~---~~~l~~~~----~~~~~~~~s 286 (417)
T TIGR02800 223 TGQ---REKVASFPGMNGAPAFSPDGSKLAVSLSKD-----GNPDIYVMDLDG-KQ---LTRLTNGP----GIDTEPSWS 286 (417)
T ss_pred CCC---EEEeecCCCCccceEECCCCCEEEEEECCC-----CCccEEEEECCC-CC---EEECCCCC----CCCCCEEEC
Confidence 997 677765555556789999999999875322 246899999974 43 23344332 234578999
Q ss_pred cCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC
Q 008927 310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (548)
Q Consensus 310 pDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl 388 (548)
|||+ |+|.+++ .+..+||.+++.+++.++++........ ..|+| +++.|++.....+..+|+.+|+
T Consensus 287 ~dg~~l~~~s~~-~g~~~iy~~d~~~~~~~~l~~~~~~~~~---------~~~sp---dg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 287 PDGKSIAFTSDR-GGSPQIYMMDADGGEVRRLTFRGGYNAS---------PSWSP---DGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred CCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCccC---------eEECC---CCCEEEEEEccCCceEEEEEeC
Confidence 9999 8888888 7778999999988888777643221112 23444 7888888877667889999999
Q ss_pred CCCceEeecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 389 FGHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 389 ~~g~~~~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
.++..+.++....... .+++|++.|++...... ...+++++.++..
T Consensus 354 ~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~-~~~l~~~~~~g~~ 400 (417)
T TIGR02800 354 DGGGERVLTDTGLDESPSFAPNGRMILYATTRGG-RGVLGLVSTDGRF 400 (417)
T ss_pred CCCCeEEccCCCCCCCceECCCCCEEEEEEeCCC-cEEEEEEECCCce
Confidence 9988877765432222 34789999988876543 3577777765443
No 23
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.77 E-value=5.3e-17 Score=166.89 Aligned_cols=256 Identities=17% Similarity=0.192 Sum_probs=173.3
Q ss_pred EECCEEEEEeCC--------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 008927 152 IFGDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (548)
Q Consensus 152 ~~~~~i~F~~~~--------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l 223 (548)
||++.|+|..+. .+.+|++++.. ++.++|+.. ......+.|||||+.|+|++. ++|
T Consensus 2 ~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~--~~~~~l~~~----~~~~~~~~~sP~g~~~~~v~~----------~nl 65 (353)
T PF00930_consen 2 PDGKFVLFATNYTKQWRHSFKGDYYIYDIET--GEITPLTPP----PPKLQDAKWSPDGKYIAFVRD----------NNL 65 (353)
T ss_dssp TTSSEEEEEEEEEEESSSEEEEEEEEEETTT--TEEEESS-E----ETTBSEEEE-SSSTEEEEEET----------TEE
T ss_pred CCCCeEEEEECcEEeeeeccceeEEEEecCC--CceEECcCC----ccccccceeecCCCeeEEEec----------Cce
Confidence 456666664321 24799999987 788888874 234677889999999999952 479
Q ss_pred EEEECCCCCccCcEEeeecC------------------CceeeeEECCCCCEEEEEEecCCCCC----------------
Q 008927 224 VAIALNGQNIQEPKVLVSGS------------------DFYAFPRMDPRGERMAWIEWHHPNMP---------------- 269 (548)
Q Consensus 224 ~~idl~~g~~~~~~~L~~~~------------------~~~~~p~~SPDGk~La~~~~~~~~~p---------------- 269 (548)
|+.++.++. .++|+... +......|||||++|||+..+....+
T Consensus 66 y~~~~~~~~---~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~ 142 (353)
T PF00930_consen 66 YLRDLATGQ---ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPE 142 (353)
T ss_dssp EEESSTTSE---EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-E
T ss_pred EEEECCCCC---eEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCc
Confidence 999999887 78887532 11245679999999999975533211
Q ss_pred ------------CCCceEEEEEecCCCceeeeEEE---cCCCCCcccCCcCceECcCCc-EEEE-EeCCCCeeeEEEEec
Q 008927 270 ------------WDKAELWVGYISENGDVYKRVCV---AGFDPTIVESPTEPKWSSKGE-LFFV-TDRKNGFWNLHKWIE 332 (548)
Q Consensus 270 ------------~~~~~L~v~~~~~~g~~~~~~~l---~~~~~~~~~~~~~~~wspDG~-L~~~-sd~~~g~~~Ly~~d~ 332 (548)
....+|+++++++ ++..+.... ...+ ..+..+.|++|++ +++. .+|......|+.+|+
T Consensus 143 ~~~~~YPk~G~~np~v~l~v~~~~~-~~~~~~~~~~~~~~~~----~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~ 217 (353)
T PF00930_consen 143 VESIRYPKAGDPNPRVSLFVVDLAS-GKTTELDPPNSLNPQD----YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDA 217 (353)
T ss_dssp EEEEE--BTTS---EEEEEEEESSS-TCCCEE---HHHHTSS----EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEE
T ss_pred ccccccCCCCCcCCceEEEEEECCC-CcEEEeeeccccCCCc----cCcccceecCCCcEEEEEEcccCCCEEEEEEEEC
Confidence 0113678888874 442211111 1222 4567889999999 7776 677678888999999
Q ss_pred cCCeeEeecccccccCCCcccccCcceeee-eecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCcee---Eeeee
Q 008927 333 SNNEVLAIYSLDAEFSRPLWVFGINSYEII-QSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDI---DNITL 408 (548)
Q Consensus 333 ~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~-~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~---~~~s~ 408 (548)
++++.+.+..+ ....|+.......+. + +++.+++...++|..|||.++.+++..++|+.+...+ ..++.
T Consensus 218 ~tg~~~~~~~e----~~~~Wv~~~~~~~~~~~---~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~ 290 (353)
T PF00930_consen 218 STGETRVVLEE----TSDGWVDVYDPPHFLGP---DGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDE 290 (353)
T ss_dssp CTTTCEEEEEE----ESSSSSSSSSEEEE-TT---TSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEEC
T ss_pred CCCceeEEEEe----cCCcceeeecccccccC---CCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcC
Confidence 88877666522 234565333333443 3 7888888888999999999999999999999764444 33467
Q ss_pred cCCEEEEEEecC-CCCCeEEEEEcC-CCceee
Q 008927 409 GNDCLFVEGASG-VEPSSVAKVTLD-DHKLKA 438 (548)
Q Consensus 409 d~~~l~~~~ss~-~~p~~l~~~d~~-~~~~~~ 438 (548)
+++.|||+++.. ....+||+++++ +++.++
T Consensus 291 ~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~ 322 (353)
T PF00930_consen 291 DNNRIYFTANGDNPGERHLYRVSLDSGGEPKC 322 (353)
T ss_dssp TSSEEEEEESSGGTTSBEEEEEETTETTEEEE
T ss_pred CCCEEEEEecCCCCCceEEEEEEeCCCCCeEe
Confidence 889999999763 345799999998 777543
No 24
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.75 E-value=1.4e-16 Score=165.17 Aligned_cols=228 Identities=15% Similarity=0.202 Sum_probs=167.9
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC
Q 008927 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (548)
Q Consensus 165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~ 244 (548)
.+|++.|-+| ...+.++.. ......+.|+||++.|+|+.-... ...++|.+++++++ ..++.....
T Consensus 173 ~~l~~~D~dg--~~~~~l~~~----~~~~~~p~ws~~~~~~~y~~f~~~-----~~~~i~~~~l~~g~---~~~i~~~~g 238 (425)
T COG0823 173 YELALGDYDG--YNQQKLTDS----GSLILTPAWSPDGKKLAYVSFELG-----GCPRIYYLDLNTGK---RPVILNFNG 238 (425)
T ss_pred ceEEEEccCC--cceeEeccc----CcceeccccCcCCCceEEEEEecC-----CCceEEEEeccCCc---cceeeccCC
Confidence 5899999886 667778775 234567899999999999854432 12689999999998 666665555
Q ss_pred ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCC
Q 008927 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG 323 (548)
Q Consensus 245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g 323 (548)
....|+|||||++|+|...+. ...+||++|+.. +. ...++... .....|.|+|||+ |+|.+|+ .|
T Consensus 239 ~~~~P~fspDG~~l~f~~~rd-----g~~~iy~~dl~~-~~---~~~Lt~~~----gi~~~Ps~spdG~~ivf~Sdr-~G 304 (425)
T COG0823 239 NNGAPAFSPDGSKLAFSSSRD-----GSPDIYLMDLDG-KN---LPRLTNGF----GINTSPSWSPDGSKIVFTSDR-GG 304 (425)
T ss_pred ccCCccCCCCCCEEEEEECCC-----CCccEEEEcCCC-Cc---ceecccCC----ccccCccCCCCCCEEEEEeCC-CC
Confidence 567899999999999987332 367899999984 43 23355543 3345899999999 9999999 99
Q ss_pred eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCc-eEeecCCCce
Q 008927 324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTD 402 (548)
Q Consensus 324 ~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~-~~~l~~~~~~ 402 (548)
..+||++++++++.++++........|.|. | |+++|++....+|...+...|+.++. ++.++.....
T Consensus 305 ~p~I~~~~~~g~~~~riT~~~~~~~~p~~S---------p---dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~ 372 (425)
T COG0823 305 RPQIYLYDLEGSQVTRLTFSGGGNSNPVWS---------P---DGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLN 372 (425)
T ss_pred CcceEEECCCCCceeEeeccCCCCcCccCC---------C---CCCEEEEEeccCCceeeEEeccCCCCcEEEccccccC
Confidence 999999999999999998643322345443 3 88999888755677888999988776 7777755433
Q ss_pred -eEeeeecCCEEEEEEecCCCCCeEEEEEcCC
Q 008927 403 -IDNITLGNDCLFVEGASGVEPSSVAKVTLDD 433 (548)
Q Consensus 403 -~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~ 433 (548)
-..++++++.++|..... ....++.++..+
T Consensus 373 e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~g 403 (425)
T COG0823 373 ESPSWAPNGRMIMFSSGQG-GGSVLSLVSLDG 403 (425)
T ss_pred CCCCcCCCCceEEEeccCC-CCceEEEeeccc
Confidence 223467888888877665 455666666543
No 25
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.6e-16 Score=158.95 Aligned_cols=173 Identities=18% Similarity=0.186 Sum_probs=125.1
Q ss_pred CCEEEEEEEeCC--eEEEEEEECC-CCceEeecCCC-ceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCceeeeee--
Q 008927 368 KNLIACSYRQNG--RSYLGILDDF-GHSLSLLDIPF-TDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDF-- 441 (548)
Q Consensus 368 ~~~l~~~~~~~g--~~~L~~~dl~-~g~~~~l~~~~-~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~-- 441 (548)
.+.+||..++++ ..+||++..+ .|++.+|+.+. ..-..++.+=+.++...++-..|+.+..+.+..++-..+.+
T Consensus 515 ~~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q~ 594 (867)
T KOG2281|consen 515 RKLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPENDPLPKQV 594 (867)
T ss_pred ceEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccchhhhhhhhhHhhhhhcCCCCceEEEEeccCCccCcccchh
Confidence 456777777764 6799999998 88999998753 32223333223355556667778887777766654322110
Q ss_pred --EEEecCCCCCCccCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc-CccC----
Q 008927 442 --KVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILN---- 514 (548)
Q Consensus 442 --~~~l~~~~~~~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~-~~~~---- 514 (548)
...|.+ ....+-++..||.|.|.++ -|.+++|.+|+|.| |++ ++|||++++|||||..+-. +.|.
T Consensus 595 ~~~~~l~~---~~~~~Pdy~p~eif~fqs~-tg~~lYgmiyKPhn--~~p--gkkYptvl~VYGGP~VQlVnnsfkgi~y 666 (867)
T KOG2281|consen 595 SFWAILVS---GAPPPPDYVPPEIFSFQSK-TGLTLYGMIYKPHN--FQP--GKKYPTVLNVYGGPGVQLVNNSFKGIQY 666 (867)
T ss_pred hHHHHHHh---cCCCCCccCChhheeeecC-CCcEEEEEEEcccc--CCC--CCCCceEEEEcCCCceEEeeccccceeh
Confidence 000111 1123345667799999997 89999999999987 764 8999999999999999864 4554
Q ss_pred hHHHHHHhcCcEEEEeCCCCCCCCChhhhhcccC
Q 008927 515 LSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSIFV 548 (548)
Q Consensus 515 ~~~Q~~asrGyaVl~~NyRGStGyG~~f~~ai~~ 548 (548)
..+++||++||+|+.+|.|||--+|.+|..+|.+
T Consensus 667 lR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~ 700 (867)
T KOG2281|consen 667 LRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKK 700 (867)
T ss_pred hhhhhhhhcceEEEEEcCCCccccchhhHHHHhh
Confidence 5678999999999999999999999999988753
No 26
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.73 E-value=1.3e-15 Score=156.54 Aligned_cols=295 Identities=15% Similarity=0.146 Sum_probs=185.2
Q ss_pred cC-CCcEEEEEecC---CCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEEEeC
Q 008927 97 DG-HGRLIWLESRP---TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSI 172 (548)
Q Consensus 97 sp-g~~i~~~~~~~---~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~~ 172 (548)
|| ++.+++..... .......++..+... ++.++|+.....+ ....|+|+|+.|+|+. +++||..++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~-~~~~~l~~~~~~~-------~~~~~sP~g~~~~~v~--~~nly~~~~ 70 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET-GEITPLTPPPPKL-------QDAKWSPDGKYIAFVR--DNNLYLRDL 70 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT-TEEEESS-EETTB-------SEEEE-SSSTEEEEEE--TTEEEEESS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCC-CceEECcCCcccc-------ccceeecCCCeeEEEe--cCceEEEEC
Confidence 46 66666643211 112234556665542 4667776541111 1247999999999998 678999999
Q ss_pred CCCCCCceecCCCCCCC--------------CceecceeeCCCCCEEEEEEeccCC------------------------
Q 008927 173 DSKDSSPLPITPDYGEP--------------LVSYADGIFDPRFNRYVTVREDRRQ------------------------ 214 (548)
Q Consensus 173 ~~~~~~~~~lT~~~~~~--------------~~~~~~~~~SpDG~~i~~v~~~~~~------------------------ 214 (548)
.+ ++.++||...+.. -.+...+.|||||++|+|.+-+...
T Consensus 71 ~~--~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~Y 148 (353)
T PF00930_consen 71 AT--GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRY 148 (353)
T ss_dssp TT--SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE-
T ss_pred CC--CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccccccc
Confidence 87 7889999863100 0123457799999999998755321
Q ss_pred ---CCCCceeEEEEEECCCCCccCcEEeee-----cCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc
Q 008927 215 ---DALNSTTEIVAIALNGQNIQEPKVLVS-----GSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD 285 (548)
Q Consensus 215 ---~~~~~~~~l~~idl~~g~~~~~~~L~~-----~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~ 285 (548)
+..+....|+++|+++++ ...+.- ..+ ......|++|+++|++...++.. ....|+++|... |.
T Consensus 149 Pk~G~~np~v~l~v~~~~~~~---~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q---~~~~l~~~d~~t-g~ 221 (353)
T PF00930_consen 149 PKAGDPNPRVSLFVVDLASGK---TTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQ---NRLDLVLCDAST-GE 221 (353)
T ss_dssp -BTTS---EEEEEEEESSSTC---CCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTS---TEEEEEEEEECT-TT
T ss_pred CCCCCcCCceEEEEEECCCCc---EEEeeeccccCCCccCcccceecCCCcEEEEEEcccCC---CEEEEEEEECCC-Cc
Confidence 112367789999999997 434321 122 35678899999977765544432 356788888874 44
Q ss_pred eeeeEEEcCCCCCcccCCcCceEC-cCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeee
Q 008927 286 VYKRVCVAGFDPTIVESPTEPKWS-SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQ 363 (548)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~~~~ws-pDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~ 363 (548)
.+. ......+ ........+.|. +||. +++++++ +|+.+||+++.+++..+.||..+.++.. ...+.
T Consensus 222 ~~~-~~~e~~~-~Wv~~~~~~~~~~~~~~~~l~~s~~-~G~~hly~~~~~~~~~~~lT~G~~~V~~--------i~~~d- 289 (353)
T PF00930_consen 222 TRV-VLEETSD-GWVDVYDPPHFLGPDGNEFLWISER-DGYRHLYLYDLDGGKPRQLTSGDWEVTS--------ILGWD- 289 (353)
T ss_dssp CEE-EEEEESS-SSSSSSSEEEE-TTTSSEEEEEEET-TSSEEEEEEETTSSEEEESS-SSS-EEE--------EEEEE-
T ss_pred eeE-EEEecCC-cceeeecccccccCCCCEEEEEEEc-CCCcEEEEEcccccceeccccCceeecc--------cceEc-
Confidence 211 1111111 111122345555 8888 8889887 9999999999999998999865433321 12233
Q ss_pred ecCCCCEEEEEEEe--CCeEEEEEEECC-CCceEeecCCCc-e-eEeeeecCCEEEEEEecCCCCC
Q 008927 364 SHGEKNLIACSYRQ--NGRSYLGILDDF-GHSLSLLDIPFT-D-IDNITLGNDCLFVEGASGVEPS 424 (548)
Q Consensus 364 ~~~d~~~l~~~~~~--~g~~~L~~~dl~-~g~~~~l~~~~~-~-~~~~s~d~~~l~~~~ss~~~p~ 424 (548)
++++.|||++.. ....+||+++++ +++++.|+.... . -..++++++.++...++++.|+
T Consensus 290 --~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 290 --EDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp --CTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred --CCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 277899999885 368899999999 899999996533 3 2345899999999999887763
No 27
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.71 E-value=1.2e-15 Score=158.24 Aligned_cols=241 Identities=15% Similarity=0.242 Sum_probs=163.9
Q ss_pred cEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCC---CeEEEEeCCCCCC
Q 008927 101 RLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD---QRLYKHSIDSKDS 177 (548)
Q Consensus 101 ~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~---~~Ly~~~~~~~~~ 177 (548)
++.++...........|+..+-+| ...+.++.....+. ...|++++..|+|..... .++|+++++. +
T Consensus 159 ~i~~v~~~~~~~~~~~l~~~D~dg-~~~~~l~~~~~~~~-------~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~--g 228 (425)
T COG0823 159 RIAYVAESDGGPLPYELALGDYDG-YNQQKLTDSGSLIL-------TPAWSPDGKKLAYVSFELGGCPRIYYLDLNT--G 228 (425)
T ss_pred eEEEEeecccCCCCceEEEEccCC-cceeEecccCccee-------ccccCcCCCceEEEEEecCCCceEEEEeccC--C
Confidence 444543222223456777776653 46677776543332 247999999888875432 4799999997 5
Q ss_pred CceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCE
Q 008927 178 SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGER 257 (548)
Q Consensus 178 ~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~ 257 (548)
....+... ......|.|||||++|+|+..+. ...+||++|+.+++ .++|+.+......|.|||||++
T Consensus 229 ~~~~i~~~----~g~~~~P~fspDG~~l~f~~~rd------g~~~iy~~dl~~~~---~~~Lt~~~gi~~~Ps~spdG~~ 295 (425)
T COG0823 229 KRPVILNF----NGNNGAPAFSPDGSKLAFSSSRD------GSPDIYLMDLDGKN---LPRLTNGFGINTSPSWSPDGSK 295 (425)
T ss_pred ccceeecc----CCccCCccCCCCCCEEEEEECCC------CCccEEEEcCCCCc---ceecccCCccccCccCCCCCCE
Confidence 55444443 23456789999999999985543 24689999999998 7889988777779999999999
Q ss_pred EEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCe
Q 008927 258 MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE 336 (548)
Q Consensus 258 La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~ 336 (548)
|+|++ +..+ ..+||++++++ +. .+.++... .....|.|||||+ |+|.+-. .|.+++...++.++.
T Consensus 296 ivf~S-dr~G----~p~I~~~~~~g-~~---~~riT~~~----~~~~~p~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~~ 361 (425)
T COG0823 296 IVFTS-DRGG----RPQIYLYDLEG-SQ---VTRLTFSG----GGNSNPVWSPDGDKIVFESSS-GGQWDIDKNDLASGG 361 (425)
T ss_pred EEEEe-CCCC----CcceEEECCCC-Cc---eeEeeccC----CCCcCccCCCCCCEEEEEecc-CCceeeEEeccCCCC
Confidence 99997 3332 45899999984 33 23333322 2344899999999 8887733 566899999987776
Q ss_pred -eEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCC
Q 008927 337 -VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (548)
Q Consensus 337 -~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g 391 (548)
++.++.. .-...|.|.. +++.|++.....+...|+.++..+.
T Consensus 362 ~~~~lt~~-~~~e~ps~~~------------ng~~i~~~s~~~~~~~l~~~s~~g~ 404 (425)
T COG0823 362 KIRILTST-YLNESPSWAP------------NGRMIMFSSGQGGGSVLSLVSLDGR 404 (425)
T ss_pred cEEEcccc-ccCCCCCcCC------------CCceEEEeccCCCCceEEEeeccce
Confidence 5555532 1223344432 6777777776667778887776443
No 28
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.1e-14 Score=161.49 Aligned_cols=221 Identities=19% Similarity=0.191 Sum_probs=135.8
Q ss_pred ceECcCCc--EEEEEeCCCCeeeEEEEeccCC-eeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEe--CCe
Q 008927 306 PKWSSKGE--LFFVTDRKNGFWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ--NGR 380 (548)
Q Consensus 306 ~~wspDG~--L~~~sd~~~g~~~Ly~~d~~~g-~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~--~g~ 380 (548)
+.++.|+. +++......++.++..+....+ +.+.++. +.|... .-+.+. .+.+.++|.+.. -+.
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~-------g~w~v~-~i~~~~---~~~~~i~f~~~~~~~~~ 413 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTS-------GNWEVT-SILGYD---KDSNRIYFDAYEEDPSE 413 (755)
T ss_pred ceEeecCCceeEEEeeccCCEEEEEEEEcCCCCccccccc-------cceEEE-Eecccc---CCCceEEEEecCCCCCc
Confidence 66777764 4444544233667766666555 4444443 344321 001111 167889988876 478
Q ss_pred EEEEEEECCCCceEeecCCCc----eeEee--eecCCEEEEEEecCCCCCeEE-EEEcCCCceeeeeeEEEecCCC--CC
Q 008927 381 SYLGILDDFGHSLSLLDIPFT----DIDNI--TLGNDCLFVEGASGVEPSSVA-KVTLDDHKLKAVDFKVVWSSSP--DT 451 (548)
Q Consensus 381 ~~L~~~dl~~g~~~~l~~~~~----~~~~~--s~d~~~l~~~~ss~~~p~~l~-~~d~~~~~~~~~~~~~~l~~~~--~~ 451 (548)
.+||.+++.++..++++.... .+..+ +...+.++.....+..|...+ +... ..... ..+|.... ..
T Consensus 414 ~~ly~i~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~--~~~~~---~~~Le~n~~~~~ 488 (755)
T KOG2100|consen 414 RHLYSISLGSGTVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDGQLTRHSS--KNSKT---IVVLETNEELKK 488 (755)
T ss_pred eEEEEEEccccccccccccCCCCcceEEEEecCCcccEEEEEccCCCCCcceeecccc--ccceE---EEEeccChhhHH
Confidence 899999999888777764322 22223 233455555555555443211 1111 11110 12232210 01
Q ss_pred CccCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc---cChHHHHHHhcCcEEE
Q 008927 452 LKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNLSIQYWTSRGWAFV 528 (548)
Q Consensus 452 ~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~---~~~~~Q~~asrGyaVl 528 (548)
.+....+...+..+.+- ||..++..++.|.+ |+ ++++|||||.+||||.++...+ .++..+++.++|++|+
T Consensus 489 ~~~~~~~p~~~~~~i~~--~~~~~~~~~~lP~~--~~--~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~ 562 (755)
T KOG2100|consen 489 TIENVALPIVEFGKIEI--DGITANAILILPPN--FD--PSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVL 562 (755)
T ss_pred HhhcccCCcceeEEEEe--ccEEEEEEEecCCC--CC--CCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEE
Confidence 12223444555555554 78899999999965 65 4789999999999998654332 3577788999999999
Q ss_pred EeCCCCCCCCChhhhhcccC
Q 008927 529 DVNYGGSTGLSSVPSTSIFV 548 (548)
Q Consensus 529 ~~NyRGStGyG~~f~~ai~~ 548 (548)
.+|+|||+|||.+|+.+++|
T Consensus 563 ~vd~RGs~~~G~~~~~~~~~ 582 (755)
T KOG2100|consen 563 QVDGRGSGGYGWDFRSALPR 582 (755)
T ss_pred EEcCCCcCCcchhHHHHhhh
Confidence 99999999999999999875
No 29
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=99.64 E-value=1.9e-12 Score=135.19 Aligned_cols=390 Identities=10% Similarity=0.039 Sum_probs=246.1
Q ss_pred CCcEEEEEecCCCCCceEEEEc-CCCCCCC-CcccCCCCCCccccce---eeCCeeeEEECCEEEEEeCCCC----eEEE
Q 008927 99 HGRLIWLESRPTEAGRGVLVKE-PAKAGDE-PSDITPKEYAVRTTAQ---EYGGGAFRIFGDTVIFSNYKDQ----RLYK 169 (548)
Q Consensus 99 g~~i~~~~~~~~e~gr~~l~~~-~~~~~~~-~~~lt~~~~~~r~~v~---~ygg~~~~~~~~~i~F~~~~~~----~Ly~ 169 (548)
|..-||.+..+ .....++.. ...+ +. .+.|+.. |.+..-+ ..|+-+.++|+..|+|+-+..+ .|-.
T Consensus 85 ~~~~Yy~r~~~--g~~y~~~~R~~~~g-~~~eevlLD~--n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~ 159 (682)
T COG1770 85 GPYEYYSRTEE--GKEYPIYCRQPDEG-GEGEEVLLDV--NKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRF 159 (682)
T ss_pred CCeeEEEEecC--CCcceeEEeccCCC-CCceeEeecc--hhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEE
Confidence 66666766432 234455444 2332 23 3444432 1111111 2244456677788998865432 4666
Q ss_pred EeCCCCCCCc--eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC--CCccCcEEeeecCC-
Q 008927 170 HSIDSKDSSP--LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNIQEPKVLVSGSD- 244 (548)
Q Consensus 170 ~~~~~~~~~~--~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~--g~~~~~~~L~~~~~- 244 (548)
.++.+ ++. ..|+. ....+.|.+|++.++|++.+.. .+...||.-.+.+ .. -++|.+..+
T Consensus 160 kdL~t--g~~~~d~i~~-------~~~~~~Wa~d~~~lfYt~~d~~----~rp~kv~~h~~gt~~~~---d~lvyeE~d~ 223 (682)
T COG1770 160 KDLAT--GEELPDEITN-------TSGSFAWAADGKTLFYTRLDEN----HRPDKVWRHRLGTPGSS---DELVYEEKDD 223 (682)
T ss_pred Eeccc--ccccchhhcc-------cccceEEecCCCeEEEEEEcCC----CCcceEEEEecCCCCCc---ceEEEEcCCC
Confidence 67765 332 23322 2456789999999999876542 1345788888877 44 567776544
Q ss_pred -ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCC
Q 008927 245 -FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (548)
Q Consensus 245 -~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~ 322 (548)
|+....-|...++|+....++ ..+++++++.+..+. +..++.....+ + ...-..-|+ +|+.++. .
T Consensus 224 ~f~~~v~~s~s~~yi~i~~~~~-----~tsE~~ll~a~~p~~--~p~vv~pr~~g----~-eY~~eh~~d~f~i~sN~-~ 290 (682)
T COG1770 224 RFFLSVGRSRSEAYIVISLGSH-----ITSEVRLLDADDPEA--EPKVVLPRENG----V-EYSVEHGGDRFYILSNA-D 290 (682)
T ss_pred cEEEEeeeccCCceEEEEcCCC-----cceeEEEEecCCCCC--ceEEEEEcCCC----c-EEeeeecCcEEEEEecC-C
Confidence 445555566777776443233 367999999885432 23333332101 1 111122266 6667777 4
Q ss_pred C-eeeEEEEeccC--CeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC
Q 008927 323 G-FWNLHKWIESN--NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 399 (548)
Q Consensus 323 g-~~~Ly~~d~~~--g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~ 399 (548)
| ...|++..... ...+.+.+.+.+... ..+.. -.+.|++....++..+|++.+..+++...|..+
T Consensus 291 gknf~l~~ap~~~~~~~w~~~I~h~~~~~l-------~~~~~-----f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~ 358 (682)
T COG1770 291 GKNFKLVRAPVSADKSNWRELIPHREDVRL-------EGVDL-----FADHLVLLERQEGLPRVVVRDRKTGEERGIAFD 358 (682)
T ss_pred CcceEEEEccCCCChhcCeeeeccCCCcee-------eeeee-----eccEEEEEecccCCceEEEEecCCCceeeEEec
Confidence 5 67788776511 123444432211111 01222 256788888888999999999988888777643
Q ss_pred Ccee-E--ee--eecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEEecCCCCCC-ccCCCccCCeEEEeeccCCCe
Q 008927 400 FTDI-D--NI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTL-KYKSYFSLPELIEFPTEVPGQ 473 (548)
Q Consensus 400 ~~~~-~--~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~pe~i~~~s~~dG~ 473 (548)
...+ . .. ..+...|.+..++-++|..++-+|+.+++.+ +|.+..-+. +++... ..+.|+.++. ||.
T Consensus 359 ~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~------~LkqqeV~~g~dp~~Y-~s~riwa~a~-dgv 430 (682)
T COG1770 359 DEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERT------LLKQQEVPGGFDPEDY-VSRRIWATAD-DGV 430 (682)
T ss_pred chhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCcEE------EEEeccCCCCCChhHe-EEEEEEEEcC-CCc
Confidence 2111 1 11 3467789999999999999999999999853 333322222 444433 3578899987 999
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChhhhhcc
Q 008927 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSI 546 (548)
Q Consensus 474 ~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~f~~ai 546 (548)
.|+--|++-++ +. -..+.|+||+.||--.....+.|+...--|..|||+...+..||+.--|++|.++.
T Consensus 431 ~VPVSLvyrkd--~~--~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~G 499 (682)
T COG1770 431 QVPVSLVYRKD--TK--LDGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDG 499 (682)
T ss_pred EeeEEEEEecc--cC--CCCCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhh
Confidence 99998887754 32 24567999999999999999999988888999999999999999999999998764
No 30
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.58 E-value=1e-12 Score=131.25 Aligned_cols=303 Identities=12% Similarity=0.165 Sum_probs=166.3
Q ss_pred CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (548)
Q Consensus 89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L 167 (548)
-.+.+..+.+ |+++.|...+ +|+.+|+.++..+ ++.+|||..+-. ...|+.++++++.|+|... ..+|
T Consensus 36 ~YF~~~~ft~dG~kllF~s~~---dg~~nly~lDL~t-~~i~QLTdg~g~------~~~g~~~s~~~~~~~Yv~~-~~~l 104 (386)
T PF14583_consen 36 LYFYQNCFTDDGRKLLFASDF---DGNRNLYLLDLAT-GEITQLTDGPGD------NTFGGFLSPDDRALYYVKN-GRSL 104 (386)
T ss_dssp --TTS--B-TTS-EEEEEE-T---TSS-EEEEEETTT--EEEE---SS-B-------TTT-EE-TTSSEEEEEET-TTEE
T ss_pred eeecCCCcCCCCCEEEEEecc---CCCcceEEEEccc-CEEEECccCCCC------CccceEEecCCCeEEEEEC-CCeE
Confidence 3466778888 8899997765 5899999998875 689999974311 1135678888888888762 2489
Q ss_pred EEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCC---C----------CCceeEEEEEECCCCCcc
Q 008927 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD---A----------LNSTTEIVAIALNGQNIQ 234 (548)
Q Consensus 168 y~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~---~----------~~~~~~l~~idl~~g~~~ 234 (548)
+++++++ .+.+.|-..++ .-..+...+...|+..++.+...+.+. . ....+.|+.||+.+|+
T Consensus 105 ~~vdL~T--~e~~~vy~~p~-~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~-- 179 (386)
T PF14583_consen 105 RRVDLDT--LEERVVYEVPD-DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE-- 179 (386)
T ss_dssp EEEETTT----EEEEEE--T-TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----
T ss_pred EEEECCc--CcEEEEEECCc-ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--
Confidence 9999998 67776655421 112244444566888888775433211 0 2356899999999999
Q ss_pred CcEEeeecCCceeeeEECC-CCCEEEEEEecCCCCCCCC--ceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcC
Q 008927 235 EPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDK--AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (548)
Q Consensus 235 ~~~~L~~~~~~~~~p~~SP-DGk~La~~~~~~~~~p~~~--~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspD 311 (548)
.+.|.+...+...+.+|| |...|+|.- . -||+. .+||+++.++++ .+.+....+. +++..-.|+||
T Consensus 180 -~~~v~~~~~wlgH~~fsP~dp~li~fCH-E---Gpw~~Vd~RiW~i~~dg~~----~~~v~~~~~~--e~~gHEfw~~D 248 (386)
T PF14583_consen 180 -RKVVFEDTDWLGHVQFSPTDPTLIMFCH-E---GPWDLVDQRIWTINTDGSN----VKKVHRRMEG--ESVGHEFWVPD 248 (386)
T ss_dssp -EEEEEEESS-EEEEEEETTEEEEEEEEE-----S-TTTSS-SEEEEETTS-------EESS---TT--EEEEEEEE-TT
T ss_pred -eeEEEecCccccCcccCCCCCCEEEEec-c---CCcceeceEEEEEEcCCCc----ceeeecCCCC--cccccccccCC
Confidence 899988888888999999 566777764 2 36764 489999977422 2333222212 67778889999
Q ss_pred Cc-EEEEEe-CCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEe------------
Q 008927 312 GE-LFFVTD-RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ------------ 377 (548)
Q Consensus 312 G~-L~~~sd-~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~------------ 377 (548)
|+ |+|.+- ++.....|+.+++++++.+.+...+ |. +.|..++ |++.++--...
T Consensus 249 G~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-------~~---~H~~ss~---Dg~L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 249 GSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-------WC---SHFMSSP---DGKLFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp SS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--------SE---EEEEE-T---TSSEEEEEE--------------
T ss_pred CCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-------ce---eeeEEcC---CCCEEEecCCCCCccccccccce
Confidence 99 888754 3222456999999998877665321 11 0122221 33322211110
Q ss_pred -CCeEEEEEEECCCCceEeecCC---C---------ce-eEeeeecCCEEEEEEecCCCCCeEEEEEcC
Q 008927 378 -NGRSYLGILDDFGHSLSLLDIP---F---------TD-IDNITLGNDCLFVEGASGVEPSSVAKVTLD 432 (548)
Q Consensus 378 -~g~~~L~~~dl~~g~~~~l~~~---~---------~~-~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~ 432 (548)
.+..-||+++++.+....|... + .. --.+++|++.++|.+.- ..++.||.+++.
T Consensus 316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~ 383 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIP 383 (386)
T ss_dssp -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--
T ss_pred ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCc
Confidence 1234688889888876655421 1 01 12358999999888654 667899998864
No 31
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=6.5e-11 Score=122.89 Aligned_cols=322 Identities=14% Similarity=0.118 Sum_probs=192.0
Q ss_pred ecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC---ceeeeEECCCCCEEEEEEecCCCC
Q 008927 193 YADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD---FYAFPRMDPRGERMAWIEWHHPNM 268 (548)
Q Consensus 193 ~~~~~~Sp-DG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~---~~~~p~~SPDGk~La~~~~~~~~~ 268 (548)
+...+|.- ||+.|.|..++.. ++...||.-.+.+.+.. -.++.+..+ +......+.+|+.+ +.+......
T Consensus 184 ~~y~~w~~~dg~~l~~~t~~~~----~r~hkvy~h~~Gtdq~~-Dvl~~~e~d~~~~vf~~~~kD~~~~~-i~si~~t~s 257 (712)
T KOG2237|consen 184 VSYLAWAKQDGEDLLYGTEDEN----NRPHKVYYHTLGTDQSE-DVLLYEEKDEPKHVFISETKDSGFYT-INSISETCS 257 (712)
T ss_pred eEeeeecccCCceeeeeeeccc----cCcceEEEEecccCCCc-ceEEEecCCCCeEEEEEEEecCceEE-EEEeeccCC
Confidence 44455666 8887777766542 24568898888775311 233433332 23333455555543 344333221
Q ss_pred CCCCceEEEEEecCCCceeeeEE-EcCCCC--CcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCe---eEeec
Q 008927 269 PWDKAELWVGYISENGDVYKRVC-VAGFDP--TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE---VLAIY 341 (548)
Q Consensus 269 p~~~~~L~v~~~~~~g~~~~~~~-l~~~~~--~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~---~~~l~ 341 (548)
| ...+|..|+...-. .... +...-. +....-.. ....++. ++|.++.......+.+.++...+ .+.+.
T Consensus 258 ~--~~~vf~~d~~~~~~--gl~~~~~~~v~~v~~f~eh~~-fi~~~~t~~~~~tn~~~p~y~l~r~~~~~~~~~~W~~v~ 332 (712)
T KOG2237|consen 258 P--VNKVFLCDLSSPSD--GLELLILPRVKGVDCFVEHYD-FITNEGTEFYFLTNKDAPNYYLLRIDVKEPEESKWETVF 332 (712)
T ss_pred c--cceEEEEecccccC--Ccchheeeccchhhhhhhhhh-heeccCcceeeeccCCCCceeEEeeeccCccccccceee
Confidence 1 34789888763111 0110 111000 00001111 2345566 88888775556667777764432 22232
Q ss_pred ccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC-CCCceEeecCCCceeEee--eecCCEEEEEEe
Q 008927 342 SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD-FGHSLSLLDIPFTDIDNI--TLGNDCLFVEGA 418 (548)
Q Consensus 342 ~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl-~~g~~~~l~~~~~~~~~~--s~d~~~l~~~~s 418 (548)
.+..+. ...|. .+. +++.+++....+-...+...++ ++..++.+..|-+.+..+ ..+...+.|..+
T Consensus 333 ~e~~~~-vl~~~------~~~----~~~~ll~~~~~~l~~i~q~~~~l~g~~~~~fpLpv~sv~~~~g~~~~~~~~f~~s 401 (712)
T KOG2237|consen 333 AEHEKD-VLEDV------DMV----NDNLLLVCYMSDLKHILQVRDLLDGSLLRSFPLPVGSVSGTSGDFKSSTIRFQFS 401 (712)
T ss_pred cccchh-hhhhh------hhh----cCceEEEEEecCchhhccccccccCceeeeecCCCCcccccccCCCCceEEEEEe
Confidence 221111 11222 121 4556666665544333333333 344567777765555444 345678999999
Q ss_pred cCCCCCeEEEEEcCCCceeeeeeEEEecC--CCCCCccCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCc
Q 008927 419 SGVEPSSVAKVTLDDHKLKAVDFKVVWSS--SPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPP 496 (548)
Q Consensus 419 s~~~p~~l~~~d~~~~~~~~~~~~~~l~~--~~~~~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~P 496 (548)
+.-.|+.||.+|+..++.+ ..++.. .+.+.++.... ..+.+.++|. ||..|+..+++-+... ...+.|
T Consensus 402 S~l~P~~iy~yDl~~~~~e----~~vf~e~~~~lpg~~~s~y-~~~r~~~~Sk-DGt~VPM~Iv~kk~~k----~dg~~P 471 (712)
T KOG2237|consen 402 SFLTPGSIYDYDLANGKPE----PSVFREITVVLPGFDASDY-VVERIEVSSK-DGTKVPMFIVYKKDIK----LDGSKP 471 (712)
T ss_pred ccCCCCeEEEeeccCCCCC----CcceeeeccccCcccccce-EEEEEEEecC-CCCccceEEEEechhh----hcCCCc
Confidence 9999999999999888532 112211 11244444333 5688999998 9999999999854321 234679
Q ss_pred EEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChhhhhcc
Q 008927 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPSTSI 546 (548)
Q Consensus 497 liv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~f~~ai 546 (548)
++|+.|||-.-...+.|..+.-.|..||++.+.+|.||+.+||++|++..
T Consensus 472 ~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G 521 (712)
T KOG2237|consen 472 LLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDG 521 (712)
T ss_pred eEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhcc
Confidence 99999999998889999998888999999999999999999999999764
No 32
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.46 E-value=5.4e-11 Score=125.33 Aligned_cols=316 Identities=14% Similarity=0.139 Sum_probs=181.5
Q ss_pred CceEEcCCCcEEEEEecCCCCCceEEEEcCCCC-CCCC-cccCC-CCCCccccceeeCCeeeEEECCEEEEEeCCCC---
Q 008927 92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKA-GDEP-SDITP-KEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--- 165 (548)
Q Consensus 92 ~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~-~~~~-~~lt~-~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~--- 165 (548)
.-|... |++.||....+. +....+|+..... .+.. +-|+. ..+.........++-.++|++++|+|.-+..|
T Consensus 72 ~~p~~~-g~~~y~~~~~~~-~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~ 149 (414)
T PF02897_consen 72 SVPVRR-GGYYYYSRNQGG-KNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEW 149 (414)
T ss_dssp ---EEE-TTEEEEEEE-SS--SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSE
T ss_pred cccEEE-CCeEEEEEEcCC-CceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCce
Confidence 334444 899998876542 3455677765441 1222 33332 22211111111122345668889999865443
Q ss_pred -eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCC--CCCceeEEEEEECCCCCccCcEEeeec
Q 008927 166 -RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD--ALNSTTEIVAIALNGQNIQEPKVLVSG 242 (548)
Q Consensus 166 -~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~--~~~~~~~l~~idl~~g~~~~~~~L~~~ 242 (548)
.|+++|+++ ++. +.... ....+..+.|++||+.++|++-+.... .......||...+.++.. +.+.|.++
T Consensus 150 ~~l~v~Dl~t--g~~--l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~-~d~lvfe~ 222 (414)
T PF02897_consen 150 YTLRVFDLET--GKF--LPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQS-EDELVFEE 222 (414)
T ss_dssp EEEEEEETTT--TEE--EEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GG-G-EEEEC-
T ss_pred EEEEEEECCC--CcC--cCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChH-hCeeEEee
Confidence 799999987 532 22110 012333489999999999986554211 011257899999988751 12466654
Q ss_pred CC--c-eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCC--CceeeeEEEcCCCCCcccCCcCceECcCCcEEEE
Q 008927 243 SD--F-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN--GDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV 317 (548)
Q Consensus 243 ~~--~-~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~--g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~ 317 (548)
.+ + +....+|+||++|+....... ..+++|++++... ... ..+++.... .......-..++.+|++
T Consensus 223 ~~~~~~~~~~~~s~d~~~l~i~~~~~~----~~s~v~~~d~~~~~~~~~-~~~~l~~~~----~~~~~~v~~~~~~~yi~ 293 (414)
T PF02897_consen 223 PDEPFWFVSVSRSKDGRYLFISSSSGT----SESEVYLLDLDDGGSPDA-KPKLLSPRE----DGVEYYVDHHGDRLYIL 293 (414)
T ss_dssp TTCTTSEEEEEE-TTSSEEEEEEESSS----SEEEEEEEECCCTTTSS--SEEEEEESS----SS-EEEEEEETTEEEEE
T ss_pred cCCCcEEEEEEecCcccEEEEEEEccc----cCCeEEEEeccccCCCcC-CcEEEeCCC----CceEEEEEccCCEEEEe
Confidence 33 4 556789999998875553331 1379999999853 111 234443321 11221111224448888
Q ss_pred EeCCCCeeeEEEEeccCCe---eE-eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECC-CCc
Q 008927 318 TDRKNGFWNLHKWIESNNE---VL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-GHS 392 (548)
Q Consensus 318 sd~~~g~~~Ly~~d~~~g~---~~-~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~-~g~ 392 (548)
++.+.....|+.++++... .+ .|.+...+.. ...+.. .++.|++...+++..+|.++++. +..
T Consensus 294 Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~-------l~~~~~-----~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 294 TNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS-------LEDVSL-----FKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp E-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE-------EEEEEE-----ETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred eCCCCCCcEEEEecccccccccceeEEcCCCCcee-------EEEEEE-----ECCEEEEEEEECCccEEEEEECCCCcE
Confidence 9876777899999987765 23 3333211100 011223 47789999999999999999998 556
Q ss_pred eEeecCC-CceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 008927 393 LSLLDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 437 (548)
Q Consensus 393 ~~~l~~~-~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~ 437 (548)
...+..+ .+.+..+ ..+++.++|..++...|+.+|.+|+.+++.+
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 6666654 3334555 4577899999999999999999999999864
No 33
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.46 E-value=2.8e-11 Score=120.34 Aligned_cols=281 Identities=15% Similarity=0.144 Sum_probs=186.9
Q ss_pred CHHHHhcCCCccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCC-CCCCccccceeeCCeeeEEECCEEE
Q 008927 80 TADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITP-KEYAVRTTAQEYGGGAFRIFGDTVI 158 (548)
Q Consensus 80 t~~~l~~~~~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~-~~~~~r~~v~~ygg~~~~~~~~~i~ 158 (548)
+-|.+..+...++.|++. |+||||+..+ +|-.+|+..+.+| ...|+.|. .++..|.. ..||++|+
T Consensus 217 tFeK~vdl~~~vS~PmIV-~~RvYFlsD~---eG~GnlYSvdldG-kDlrrHTnFtdYY~R~~---------nsDGkrIv 282 (668)
T COG4946 217 TFEKFVDLDGNVSSPMIV-GERVYFLSDH---EGVGNLYSVDLDG-KDLRRHTNFTDYYPRNA---------NSDGKRIV 282 (668)
T ss_pred ceeeeeecCCCcCCceEE-cceEEEEecc---cCccceEEeccCC-chhhhcCCchhcccccc---------CCCCcEEE
Confidence 346666677889999999 9999999976 6999999998875 56788886 45555533 35788999
Q ss_pred EEeCCCCeEEEEeCCCCCCCceecCCC---C---CC----CCceec-ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927 159 FSNYKDQRLYKHSIDSKDSSPLPITPD---Y---GE----PLVSYA-DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (548)
Q Consensus 159 F~~~~~~~Ly~~~~~~~~~~~~~lT~~---~---~~----~~~~~~-~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id 227 (548)
|+. .+.||++|+++ ...+.|--+ . +. .+..|. +++.+ +|..|++|+. ...++++
T Consensus 283 Fq~--~GdIylydP~t--d~lekldI~lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~VSR----------GkaFi~~ 347 (668)
T COG4946 283 FQN--AGDIYLYDPET--DSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALVSR----------GKAFIMR 347 (668)
T ss_pred Eec--CCcEEEeCCCc--CcceeeecCCccccccccccccCHHHhhhhhccC-CCcEEEEEec----------CcEEEEC
Confidence 998 66799999986 344433221 0 00 011222 23333 6899999853 4678888
Q ss_pred CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (548)
Q Consensus 228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ 307 (548)
...+- ..++-+... +..-+++-|++.++ +..+ ++..|-+++.+ +|+ ...+...- ..+....
T Consensus 348 ~~~~~---~iqv~~~~~-VrY~r~~~~~e~~v-igt~------dgD~l~iyd~~-~~e---~kr~e~~l----g~I~av~ 408 (668)
T COG4946 348 PWDGY---SIQVGKKGG-VRYRRIQVDPEGDV-IGTN------DGDKLGIYDKD-GGE---VKRIEKDL----GNIEAVK 408 (668)
T ss_pred CCCCe---eEEcCCCCc-eEEEEEccCCcceE-Eecc------CCceEEEEecC-Cce---EEEeeCCc----cceEEEE
Confidence 87776 555554333 45556777888655 3312 34578888987 354 33343332 4567788
Q ss_pred ECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC-CeEEEEE
Q 008927 308 WSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-GRSYLGI 385 (548)
Q Consensus 308 wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~-g~~~L~~ 385 (548)
-++||+ +++..|+ .+||.+|+++|+++.+...+ .+. ...|.|.| ++++|++..-.+ -..+|.+
T Consensus 409 vs~dGK~~vvaNdr----~el~vididngnv~~idkS~--~~l------Itdf~~~~---nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 409 VSPDGKKVVVANDR----FELWVIDIDNGNVRLIDKSE--YGL------ITDFDWHP---NSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred EcCCCcEEEEEcCc----eEEEEEEecCCCeeEecccc--cce------eEEEEEcC---CceeEEEecCcceeeeeEEE
Confidence 899999 5444444 68999999999988775321 111 11255654 667776654322 2567889
Q ss_pred EECCCCceEeecCCC-ceeEe-eeecCCEEEEEEecCCCC
Q 008927 386 LDDFGHSLSLLDIPF-TDIDN-ITLGNDCLFVEGASGVEP 423 (548)
Q Consensus 386 ~dl~~g~~~~l~~~~-~~~~~-~s~d~~~l~~~~ss~~~p 423 (548)
+|.+++++-.++++. .++++ +.+|++.|||++...-.|
T Consensus 474 ydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdP 513 (668)
T COG4946 474 YDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDP 513 (668)
T ss_pred EecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCC
Confidence 999999999888764 34554 489999999999765444
No 34
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.36 E-value=7.3e-11 Score=117.44 Aligned_cols=240 Identities=19% Similarity=0.205 Sum_probs=151.5
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (548)
Q Consensus 153 ~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~ 232 (548)
.|++|+|+.. ..||.+++.. +++++||... .-...+.++|||++|+|.+--... .....+||+++.++|+
T Consensus 49 ~GD~IiFt~~--DdlWe~slk~--g~~~ritS~l----GVvnn~kf~pdGrkvaf~rv~~~s--s~~taDly~v~~e~Ge 118 (668)
T COG4946 49 YGDRIIFTCC--DDLWEYSLKD--GKPLRITSGL----GVVNNPKFSPDGRKVAFSRVMLGS--SLQTADLYVVPSEDGE 118 (668)
T ss_pred cCcEEEEEec--hHHHHhhhcc--CCeeEEeccc----ceeccccCCCCCcEEEEEEEEecC--CCccccEEEEeCCCCc
Confidence 3789999984 4599999987 8999999973 346678999999999995422111 0123689999999999
Q ss_pred ccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcC
Q 008927 233 IQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (548)
Q Consensus 233 ~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspD 311 (548)
.++|+- |..|..-.-|+|||+-|+......|-.. -++||-+.+++ .+. +. +.-++ .....+ .|
T Consensus 119 ---~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q--~~~lYkv~~dg-~~~-e~--LnlGp------athiv~-~d 182 (668)
T COG4946 119 ---AKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQ--WTELYKVNVDG-IKT-EP--LNLGP------ATHIVI-KD 182 (668)
T ss_pred ---EEEEEEeccccceeeccCCCCCEEEEeccCCCccc--ceeeeEEccCC-cee-ee--ccCCc------eeeEEE-eC
Confidence 888863 4445444569999998876543333222 35788888763 321 11 11111 112222 35
Q ss_pred CcEEEEEeC---------CCC-eeeEEEEeccCC-eeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCe
Q 008927 312 GELFFVTDR---------KNG-FWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (548)
Q Consensus 312 G~L~~~sd~---------~~g-~~~Ly~~d~~~g-~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~ 380 (548)
|.++.-.+. ..| ...||.-. .+| ..+.+...+..+..|. . -++++||.+..+|.
T Consensus 183 g~ivigRntydLP~WK~YkGGtrGklWis~-d~g~tFeK~vdl~~~vS~Pm---------I-----V~~RvYFlsD~eG~ 247 (668)
T COG4946 183 GIIVIGRNTYDLPHWKGYKGGTRGKLWISS-DGGKTFEKFVDLDGNVSSPM---------I-----VGERVYFLSDHEGV 247 (668)
T ss_pred CEEEEccCcccCcccccccCCccceEEEEe-cCCcceeeeeecCCCcCCce---------E-----EcceEEEEecccCc
Confidence 532222111 011 22355433 344 3444443333333332 1 36789999999999
Q ss_pred EEEEEEECCCCceEeecCCCceeE--eeeecCCEEEEEEecCCCCCeEEEEEcCCCceeee
Q 008927 381 SYLGILDDFGHSLSLLDIPFTDID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (548)
Q Consensus 381 ~~L~~~dl~~g~~~~l~~~~~~~~--~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~ 439 (548)
.+||.+|+++..++.-+ .|.+.. .+..||++|+|... ++||++|+++..++.+
T Consensus 248 GnlYSvdldGkDlrrHT-nFtdYY~R~~nsDGkrIvFq~~-----GdIylydP~td~lekl 302 (668)
T COG4946 248 GNLYSVDLDGKDLRRHT-NFTDYYPRNANSDGKRIVFQNA-----GDIYLYDPETDSLEKL 302 (668)
T ss_pred cceEEeccCCchhhhcC-CchhccccccCCCCcEEEEecC-----CcEEEeCCCcCcceee
Confidence 99999999877666543 344433 34679999999764 6899999988776554
No 35
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.29 E-value=5.6e-11 Score=122.81 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=127.5
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCceEeecCCCc-eeE--eeeecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEE
Q 008927 368 KNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT-DID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVV 444 (548)
Q Consensus 368 ~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~-~~~--~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~ 444 (548)
.++|+....++...+|.+.+..+-..+.|..+.. .+. ..+.++..+++..++.+.|+.+|++++.+++++ +
T Consensus 306 ~~~~va~~l~nv~~~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe------~ 379 (648)
T COG1505 306 KDKLVAGTLDNVSGRLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGELE------V 379 (648)
T ss_pred cCeEEeeeehhccceEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCceeh------h
Confidence 4566666666666677777776645667766533 233 335677888888899999999999999888753 3
Q ss_pred ecCCCCCCccCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcC
Q 008927 445 WSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG 524 (548)
Q Consensus 445 l~~~~~~~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrG 524 (548)
+... ...++...+ ..|.+...|. ||..|+.+++. ++..+ + +.|++|+.|||-.-.-.|.|+..+-+|..||
T Consensus 380 ik~~-p~~FDa~~~-~veQ~~atSk-DGT~IPYFiv~-K~~~~----d-~~pTll~aYGGF~vsltP~fs~~~~~WLerG 450 (648)
T COG1505 380 IREQ-PVQFDADNY-EVEQFFATSK-DGTRIPYFIVR-KGAKK----D-ENPTLLYAYGGFNISLTPRFSGSRKLWLERG 450 (648)
T ss_pred hhhc-cCCcCccCc-eEEEEEEEcC-CCccccEEEEe-cCCcC----C-CCceEEEeccccccccCCccchhhHHHHhcC
Confidence 3332 234454444 4677778897 99999999998 76332 3 6799999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCChhhhhcccC
Q 008927 525 WAFVDVNYGGSTGLSSVPSTSIFV 548 (548)
Q Consensus 525 yaVl~~NyRGStGyG~~f~~ai~~ 548 (548)
.+.++.|.||+.-||-+|++|-.|
T Consensus 451 g~~v~ANIRGGGEfGp~WH~Aa~k 474 (648)
T COG1505 451 GVFVLANIRGGGEFGPEWHQAGMK 474 (648)
T ss_pred CeEEEEecccCCccCHHHHHHHhh
Confidence 999999999999999999998643
No 36
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.20 E-value=3.6e-09 Score=106.11 Aligned_cols=274 Identities=12% Similarity=0.163 Sum_probs=139.4
Q ss_pred CCCcccCCCCC-CccccceeeCCeeeEEECCEEEEEeCCCC--eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCC
Q 008927 126 DEPSDITPKEY-AVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF 202 (548)
Q Consensus 126 ~~~~~lt~~~~-~~r~~v~~ygg~~~~~~~~~i~F~~~~~~--~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG 202 (548)
-+..+||+.+. +.+.- +=...|..||++|+|.++.++ +||++|+++ ++.+|||.+.+ ...+ ...++|+.
T Consensus 21 ~~VtrLT~~~~~~h~~Y---F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~g--~~~~-g~~~s~~~ 92 (386)
T PF14583_consen 21 HRVTRLTPPDGHSHRLY---FYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGPG--DNTF-GGFLSPDD 92 (386)
T ss_dssp -EEEE-S-TTS-EE------TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS---B-TT-T-EE-TTS
T ss_pred ceEEEecCCCCccccee---ecCCCcCCCCCEEEEEeccCCCcceEEEEccc--CEEEECccCCC--CCcc-ceEEecCC
Confidence 35778887543 22211 123578888999999887664 999999998 89999999742 1223 45789999
Q ss_pred CEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC-cee--eeEECCCCCEEEEEEecCCCC-C---C-----
Q 008927 203 NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD-FYA--FPRMDPRGERMAWIEWHHPNM-P---W----- 270 (548)
Q Consensus 203 ~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~-~~~--~p~~SPDGk~La~~~~~~~~~-p---~----- 270 (548)
+.|+|+... ..|+.+||++++ .+.|..-++ +.. ......|+.+++.+.....+. + |
T Consensus 93 ~~~~Yv~~~---------~~l~~vdL~T~e---~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e 160 (386)
T PF14583_consen 93 RALYYVKNG---------RSLRRVDLDTLE---ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFRE 160 (386)
T ss_dssp SEEEEEETT---------TEEEEEETTT-----EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHH
T ss_pred CeEEEEECC---------CeEEEEECCcCc---EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHH
Confidence 999998532 379999999998 778876544 433 333467899988776433221 1 1
Q ss_pred -----CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCC--CCe-eeEEEEeccCCeeEeec
Q 008927 271 -----DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK--NGF-WNLHKWIESNNEVLAIY 341 (548)
Q Consensus 271 -----~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~--~g~-~~Ly~~d~~~g~~~~l~ 341 (548)
-...|+.+++. +|+ .+.+.... .....+.+||..- ++..+-.+ ... ..||.++.+++..+.|.
T Consensus 161 ~~~a~p~~~i~~idl~-tG~---~~~v~~~~----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~ 232 (386)
T PF14583_consen 161 FYEARPHCRIFTIDLK-TGE---RKVVFEDT----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH 232 (386)
T ss_dssp HHHC---EEEEEEETT-T-----EEEEEEES----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS
T ss_pred HHhhCCCceEEEEECC-CCc---eeEEEecC----ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee
Confidence 12589999998 465 33333322 4567788888644 54444321 111 36999998887777776
Q ss_pred cccc--ccCCCcccccCcceeeeeecCCCCEEEEEEE-eCC-eEEEEEEECCCCceEeec-CCCceeEeeeecCCEEEEE
Q 008927 342 SLDA--EFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNG-RSYLGILDDFGHSLSLLD-IPFTDIDNITLGNDCLFVE 416 (548)
Q Consensus 342 ~~~~--d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~-~~g-~~~L~~~dl~~g~~~~l~-~~~~~~~~~s~d~~~l~~~ 416 (548)
+... ..+..- |.+ ||..|++... .++ ...|+.+|+++++.+.+. .+....-..+.|++.++==
T Consensus 233 ~~~~~e~~gHEf---------w~~---DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGD 300 (386)
T PF14583_consen 233 RRMEGESVGHEF---------WVP---DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGD 300 (386)
T ss_dssp ---TTEEEEEEE---------E-T---TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEE
T ss_pred cCCCCccccccc---------ccC---CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEec
Confidence 3211 111122 333 8888888655 444 457899999999877654 2332211113455533222
Q ss_pred EecC------------CCCCeEEEEEcCCCceeee
Q 008927 417 GASG------------VEPSSVAKVTLDDHKLKAV 439 (548)
Q Consensus 417 ~ss~------------~~p~~l~~~d~~~~~~~~~ 439 (548)
++.. ..-+-||+++++.+..+.|
T Consensus 301 G~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l 335 (386)
T PF14583_consen 301 GGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKL 335 (386)
T ss_dssp E-------------------EEEEEETTTTEEEEE
T ss_pred CCCCCccccccccceecCCcEEEEeccccCceeee
Confidence 2211 1123677788877765433
No 37
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.11 E-value=2.5e-07 Score=92.15 Aligned_cols=243 Identities=8% Similarity=0.005 Sum_probs=135.2
Q ss_pred eeeEEECCEEEEEeCCCCeEEEEeCCCCCCCcee-cCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (548)
Q Consensus 148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~-lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i 226 (548)
..|+++++.++.....++.|+++++.+ ++... +.... ....+.|+|||+.+++.... ...|.++
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~~-----~~~~~~~~~~g~~l~~~~~~--------~~~l~~~ 100 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLAT--GEVIGTLPSGP-----DPELFALHPNGKILYIANED--------DNLVTVI 100 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCC--CcEEEeccCCC-----CccEEEECCCCCEEEEEcCC--------CCeEEEE
Confidence 467778877777766678899999876 54433 33321 12346799999977554322 1368999
Q ss_pred ECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCc
Q 008927 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (548)
Q Consensus 227 dl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~ 306 (548)
|+.+++ ...............|+|||+.|+....+ ...+++++.+. ++. ...+... ......
T Consensus 101 d~~~~~---~~~~~~~~~~~~~~~~~~dg~~l~~~~~~-------~~~~~~~d~~~-~~~--~~~~~~~-----~~~~~~ 162 (300)
T TIGR03866 101 DIETRK---VLAEIPVGVEPEGMAVSPDGKIVVNTSET-------TNMAHFIDTKT-YEI--VDNVLVD-----QRPRFA 162 (300)
T ss_pred ECCCCe---EEeEeeCCCCcceEEECCCCCEEEEEecC-------CCeEEEEeCCC-CeE--EEEEEcC-----CCccEE
Confidence 998765 22212211123456899999988755421 23466667663 432 1112111 233557
Q ss_pred eECcCCc-EEEEEeCCCCeeeEEEEeccCCee-EeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEE
Q 008927 307 KWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (548)
Q Consensus 307 ~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~-~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~ 384 (548)
.|+|||+ |++.++. .+ .|+.+|+++++. +.+....... .+.. .....+.+.+ +++.+++.... ...+.
T Consensus 163 ~~s~dg~~l~~~~~~-~~--~v~i~d~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~s~---dg~~~~~~~~~--~~~i~ 232 (300)
T TIGR03866 163 EFTADGKELWVSSEI-GG--TVSVIDVATRKVIKKITFEIPGV-HPEA-VQPVGIKLTK---DGKTAFVALGP--ANRVA 232 (300)
T ss_pred EECCCCCEEEEEcCC-CC--EEEEEEcCcceeeeeeeeccccc-cccc-CCccceEECC---CCCEEEEEcCC--CCeEE
Confidence 8999999 5554443 33 577888887764 3332110000 0000 0011234443 67766544322 23588
Q ss_pred EEECCCCceEeecCCCceeEe--eeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 385 ILDDFGHSLSLLDIPFTDIDN--ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 385 ~~dl~~g~~~~l~~~~~~~~~--~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
++|++++++.........+.. ++++++.|+.... .-..|.++|+++++.
T Consensus 233 v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 233 VVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNG---VSNDVSVIDVAALKV 283 (300)
T ss_pred EEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcC---CCCeEEEEECCCCcE
Confidence 889988876532211112222 3678887654432 235799999987763
No 38
>PRK13616 lipoprotein LpqB; Provisional
Probab=99.05 E-value=3.6e-08 Score=106.93 Aligned_cols=200 Identities=11% Similarity=0.050 Sum_probs=118.4
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCc
Q 008927 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (548)
Q Consensus 157 i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~ 236 (548)
++.+. +++|++++- +..+++..... ......++.+||||+.++|+....++ .++.+.+||+++. ++. .
T Consensus 323 ~~~v~--~G~l~~~~~----~~~~pv~g~~g-~~~~vsspaiSpdG~~vA~v~~~~~~-~~d~~s~Lwv~~~-gg~---~ 390 (591)
T PRK13616 323 LHALV--DGSLVSVDG----QGVTPVPGAFG-QMGNITSAALSRSGRQVAAVVTLGRG-APDPASSLWVGPL-GGV---A 390 (591)
T ss_pred ceEEE--CCeEEEecC----CCeeeCCCccc-cccCcccceECCCCCEEEEEEeecCC-CCCcceEEEEEeC-CCc---c
Confidence 44444 566776642 33444433211 11235678999999999998643321 1225679999997 444 5
Q ss_pred EEeeecCCceeeeEECCCCCEEEEEEecCCC----CCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927 237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPN----MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (548)
Q Consensus 237 ~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~----~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG 312 (548)
+.++.+.. ...|+|||||++|+|+....+- ......+||+++++. ++. +. ..+ ..+..+.|||||
T Consensus 391 ~~lt~g~~-~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~-ge~---~~--~~~----g~Issl~wSpDG 459 (591)
T PRK13616 391 VQVLEGHS-LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDA-SAV---AS--RVP----GPISELQLSRDG 459 (591)
T ss_pred eeeecCCC-CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccC-chh---hh--ccC----CCcCeEEECCCC
Confidence 77777654 7899999999999887622110 011246888888873 442 22 112 458899999999
Q ss_pred c-EEEEEeCCCCeeeEEE---EeccCCeeEeeccc---ccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927 313 E-LFFVTDRKNGFWNLHK---WIESNNEVLAIYSL---DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (548)
Q Consensus 313 ~-L~~~sd~~~g~~~Ly~---~d~~~g~~~~l~~~---~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~ 385 (548)
+ |+|+.+ | +||+ ...++|+ ..|+.. ....... .....|. ++..|+.. ..++...++.
T Consensus 460 ~RiA~i~~---g--~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~-----~~~l~W~----~~~~L~V~-~~~~~~~v~~ 523 (591)
T PRK13616 460 VRAAMIIG---G--KVYLAVVEQTEDGQ-YALTNPREVGPGLGDT-----AVSLDWR----TGDSLVVG-RSDPEHPVWY 523 (591)
T ss_pred CEEEEEEC---C--EEEEEEEEeCCCCc-eeecccEEeecccCCc-----cccceEe----cCCEEEEE-ecCCCCceEE
Confidence 9 999874 3 5666 4445665 334210 0011110 0123455 55667644 4456677899
Q ss_pred EECCCCceEe
Q 008927 386 LDDFGHSLSL 395 (548)
Q Consensus 386 ~dl~~g~~~~ 395 (548)
+++++...+.
T Consensus 524 v~vDG~~~~~ 533 (591)
T PRK13616 524 VNLDGSNSDA 533 (591)
T ss_pred EecCCccccc
Confidence 9987554443
No 39
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=9.3e-07 Score=86.44 Aligned_cols=275 Identities=13% Similarity=0.143 Sum_probs=149.5
Q ss_pred CccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCe-ee-EEE-CCEEEEE-eCCC
Q 008927 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGG-AF-RIF-GDTVIFS-NYKD 164 (548)
Q Consensus 89 ~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~-~~-~~~-~~~i~F~-~~~~ 164 (548)
....-+.++|.++..|+-..+.++|.-.-+.++.+. |....|.... ..|.+ .+ +.| +++.+|+ +...
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~-G~Lt~ln~~~--------~~g~~p~yvsvd~~g~~vf~AnY~~ 110 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD-GRLTFLNRQT--------LPGSPPCYVSVDEDGRFVFVANYHS 110 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC-CeEEEeeccc--------cCCCCCeEEEECCCCCEEEEEEccC
Confidence 555667889855455554456667887778887542 3443332111 11222 33 333 2245555 4445
Q ss_pred CeEEEEeCCCCCCCceec---CCCCCC-CCce-----ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccC
Q 008927 165 QRLYKHSIDSKDSSPLPI---TPDYGE-PLVS-----YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (548)
Q Consensus 165 ~~Ly~~~~~~~~~~~~~l---T~~~~~-~~~~-----~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~ 235 (548)
+.|-++++..+ |.+..+ ....+. +-.| .....+.|||+.|+.+ .-. ...|++.+++.|....
T Consensus 111 g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~-DLG-------~Dri~~y~~~dg~L~~ 181 (346)
T COG2706 111 GSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP-DLG-------TDRIFLYDLDDGKLTP 181 (346)
T ss_pred ceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe-ecC-------CceEEEEEcccCcccc
Confidence 66666666432 333222 111100 0011 1223589999986554 322 1356777777665211
Q ss_pred --cEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC-CCceeeeEEEcCCCCC--cccCCcCceECc
Q 008927 236 --PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPT--IVESPTEPKWSS 310 (548)
Q Consensus 236 --~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~-~g~~~~~~~l~~~~~~--~~~~~~~~~wsp 310 (548)
.-.+..+.+ -.+..|.|+|| +||+... -.+.+-++..+. .|++.+...+..-+.+ ...+.....-++
T Consensus 182 ~~~~~v~~G~G-PRHi~FHpn~k-~aY~v~E------L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 182 ADPAEVKPGAG-PRHIVFHPNGK-YAYLVNE------LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred ccccccCCCCC-cceEEEcCCCc-EEEEEec------cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 112222322 24557999999 5666522 145666666654 3555444433221100 003445677899
Q ss_pred CCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCC
Q 008927 311 KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 390 (548)
Q Consensus 311 DG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~ 390 (548)
||+++|++||+...-.+|.++..+|+.+.+.....+-..| +.|.+.+ +++.|++...+...-.+|.+|.++
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~P------R~F~i~~---~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFP------RDFNINP---SGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCC------ccceeCC---CCCEEEEEccCCCcEEEEEEcCCC
Confidence 9998889998666667889999888866543211111112 2355653 566666655566778899999999
Q ss_pred CceEeecC
Q 008927 391 HSLSLLDI 398 (548)
Q Consensus 391 g~~~~l~~ 398 (548)
|++.++..
T Consensus 325 G~L~~~~~ 332 (346)
T COG2706 325 GRLTLLGR 332 (346)
T ss_pred ceEEeccc
Confidence 99887754
No 40
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.93 E-value=2.7e-08 Score=107.87 Aligned_cols=165 Identities=10% Similarity=0.045 Sum_probs=109.8
Q ss_pred CeeeEEECCEEEEEe-------CCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCC---CC
Q 008927 147 GGAFRIFGDTVIFSN-------YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ---DA 216 (548)
Q Consensus 147 g~~~~~~~~~i~F~~-------~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~---~~ 216 (548)
..+.+++|+.|+|.. +...+||+.+.. ++.+++|... ....|.|||||++|+|++....- ..
T Consensus 354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g---g~~~~lt~g~-----~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG---GVAVQVLEGH-----SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cceECCCCCEEEEEEeecCCCCCcceEEEEEeCC---CcceeeecCC-----CCCCceECCCCCceEEEecCcceEEEec
Confidence 346788999999997 223589999974 5668888752 47889999999999998532110 00
Q ss_pred CCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEec--CCCc--eeeeEEE
Q 008927 217 LNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGD--VYKRVCV 292 (548)
Q Consensus 217 ~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~--~~g~--~~~~~~l 292 (548)
.....+||++++++++ .++ .....+..++|||||++|||+. ..+||+.-+. .+|+ +.+.+.+
T Consensus 426 ~~~~gql~~~~vd~ge---~~~--~~~g~Issl~wSpDG~RiA~i~---------~g~v~Va~Vvr~~~G~~~l~~~~~l 491 (591)
T PRK13616 426 DPATGQLARTPVDASA---VAS--RVPGPISELQLSRDGVRAAMII---------GGKVYLAVVEQTEDGQYALTNPREV 491 (591)
T ss_pred cCCCceEEEEeccCch---hhh--ccCCCcCeEEECCCCCEEEEEE---------CCEEEEEEEEeCCCCceeecccEEe
Confidence 0123589999999887 554 2233478899999999999987 2478884433 2453 2222334
Q ss_pred cCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeE
Q 008927 293 AGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL 338 (548)
Q Consensus 293 ~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~ 338 (548)
.... . .....+.|..|++|+...+ .+...+|++++++...+
T Consensus 492 ~~~l-~--~~~~~l~W~~~~~L~V~~~--~~~~~v~~v~vDG~~~~ 532 (591)
T PRK13616 492 GPGL-G--DTAVSLDWRTGDSLVVGRS--DPEHPVWYVNLDGSNSD 532 (591)
T ss_pred eccc-C--CccccceEecCCEEEEEec--CCCCceEEEecCCcccc
Confidence 3322 1 2346789999999765544 34456899998655433
No 41
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.93 E-value=5.5e-07 Score=92.43 Aligned_cols=279 Identities=9% Similarity=0.058 Sum_probs=143.4
Q ss_pred CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeE
Q 008927 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (548)
Q Consensus 89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~L 167 (548)
...+.+.++| ++.+|.+.....+.|....+.++.+. +..+.+....-.-..+.| .+..++++.|+-.+..++.+
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-g~L~~~~~~~~~g~~p~~----i~~~~~g~~l~vany~~g~v 111 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-GTLTLLNSVPSGGSSPCH----IAVDPDGRFLYVANYGGGSV 111 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-TEEEEEEEEEESSSCEEE----EEECTTSSEEEEEETTTTEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-ceeEEeeeeccCCCCcEE----EEEecCCCEEEEEEccCCeE
Confidence 5566778888 66666664322134655556665441 233332211000011110 02233566777777778888
Q ss_pred EEEeCCCCCCCceec---CC----CCC---CCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCC--CccC
Q 008927 168 YKHSIDSKDSSPLPI---TP----DYG---EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ--NIQE 235 (548)
Q Consensus 168 y~~~~~~~~~~~~~l---T~----~~~---~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g--~~~~ 235 (548)
.+++++.+ +..... .. ... ..........++|||++|+. ..... ..|++++++.. +...
T Consensus 112 ~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v-~dlG~-------D~v~~~~~~~~~~~l~~ 182 (345)
T PF10282_consen 112 SVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV-PDLGA-------DRVYVYDIDDDTGKLTP 182 (345)
T ss_dssp EEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE-EETTT-------TEEEEEEE-TTS-TEEE
T ss_pred EEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE-EecCC-------CEEEEEEEeCCCceEEE
Confidence 77777642 333222 10 000 00112334679999998754 33321 34666665543 3100
Q ss_pred cEEeeecCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEec-CCCceeeeEEEcCCCCCc-c-cCCcCceECcC
Q 008927 236 PKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVAGFDPTI-V-ESPTEPKWSSK 311 (548)
Q Consensus 236 ~~~L~~~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~-~~g~~~~~~~l~~~~~~~-~-~~~~~~~wspD 311 (548)
...+.-..+ .-.+..|+|||++++ +... ....|.+++++ .+|.++....+...+... . ........+||
T Consensus 183 ~~~~~~~~G~GPRh~~f~pdg~~~Y-v~~e------~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd 255 (345)
T PF10282_consen 183 VDSIKVPPGSGPRHLAFSPDGKYAY-VVNE------LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD 255 (345)
T ss_dssp EEEEECSTTSSEEEEEE-TTSSEEE-EEET------TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT
T ss_pred eeccccccCCCCcEEEEcCCcCEEE-EecC------CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC
Confidence 011111111 124568999999764 5522 24678888887 345543333332211000 0 13456788999
Q ss_pred CcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCC
Q 008927 312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (548)
Q Consensus 312 G~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g 391 (548)
|+.+|+++++.+.-.+|.+|.++|+++.+......-..| ..+.+.| +++.|+......+.-.++.+|.++|
T Consensus 256 g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~P------r~~~~s~---~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 256 GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFP------RHFAFSP---DGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSE------EEEEE-T---TSSEEEEEETTTTEEEEEEEETTTT
T ss_pred CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCc------cEEEEeC---CCCEEEEEecCCCeEEEEEEeCCCC
Confidence 998888888666667777776778776553211111112 2345554 7777776555667788888999999
Q ss_pred ceEeec
Q 008927 392 SLSLLD 397 (548)
Q Consensus 392 ~~~~l~ 397 (548)
+++.+.
T Consensus 327 ~l~~~~ 332 (345)
T PF10282_consen 327 KLTPVG 332 (345)
T ss_dssp EEEEEE
T ss_pred cEEEec
Confidence 877553
No 42
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.92 E-value=1.6e-06 Score=86.23 Aligned_cols=204 Identities=12% Similarity=0.070 Sum_probs=114.2
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id 227 (548)
.|+++++.++.....++.|+++++.. ++. ..+... .....+.|+|||+.+++...+. ..++.+|
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~--~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~--------~~~~~~d 143 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIET--RKVLAEIPVG-----VEPEGMAVSPDGKIVVNTSETT--------NMAHFID 143 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCC--CeEEeEeeCC-----CCcceEEECCCCCEEEEEecCC--------CeEEEEe
Confidence 56677777766665677899999875 332 222211 1234578999999877753321 2456678
Q ss_pred CCCCCccCcEE-eeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCC-C--CCcccCC
Q 008927 228 LNGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF-D--PTIVESP 303 (548)
Q Consensus 228 l~~g~~~~~~~-L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~-~--~~~~~~~ 303 (548)
+.+++ ... +..+ .......|+|||++|++.. . ....|++.|++. ++. ...+... . .......
T Consensus 144 ~~~~~---~~~~~~~~-~~~~~~~~s~dg~~l~~~~-~------~~~~v~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~ 209 (300)
T TIGR03866 144 TKTYE---IVDNVLVD-QRPRFAEFTADGKELWVSS-E------IGGTVSVIDVAT-RKV--IKKITFEIPGVHPEAVQP 209 (300)
T ss_pred CCCCe---EEEEEEcC-CCccEEEECCCCCEEEEEc-C------CCCEEEEEEcCc-cee--eeeeeecccccccccCCc
Confidence 87765 322 2212 1223468999999886443 1 135789999874 432 1212110 0 0000123
Q ss_pred cCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEE
Q 008927 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 383 (548)
Q Consensus 304 ~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L 383 (548)
....|+|||+.+|+..... ..|.++|+++++....... +...+ ...|.| +++.|+..... ...|
T Consensus 210 ~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~~~~~~~~~~----~~~~~-----~~~~~~---~g~~l~~~~~~--~~~i 273 (300)
T TIGR03866 210 VGIKLTKDGKTAFVALGPA--NRVAVVDAKTYEVLDYLLV----GQRVW-----QLAFTP---DEKYLLTTNGV--SNDV 273 (300)
T ss_pred cceEECCCCCEEEEEcCCC--CeEEEEECCCCcEEEEEEe----CCCcc-----eEEECC---CCCEEEEEcCC--CCeE
Confidence 4578999999544543212 3588889887776433211 11122 234554 77777644322 3368
Q ss_pred EEEECCCCce-Eeec
Q 008927 384 GILDDFGHSL-SLLD 397 (548)
Q Consensus 384 ~~~dl~~g~~-~~l~ 397 (548)
.++|+++++. +.+.
T Consensus 274 ~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 274 SVIDVAALKVIKSIK 288 (300)
T ss_pred EEEECCCCcEEEEEE
Confidence 8899988874 4444
No 43
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.86 E-value=3.6e-06 Score=85.84 Aligned_cols=258 Identities=12% Similarity=0.091 Sum_probs=126.4
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
.++++++.|+-....++.|+.++++.+ +..+.+.... .........++|||+.|+..... .+.|.++++
T Consensus 41 ~~spd~~~lyv~~~~~~~i~~~~~~~~-g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~--------~~~v~v~~~ 109 (330)
T PRK11028 41 VISPDKRHLYVGVRPEFRVLSYRIADD-GALTFAAESP--LPGSPTHISTDHQGRFLFSASYN--------ANCVSVSPL 109 (330)
T ss_pred EECCCCCEEEEEECCCCcEEEEEECCC-CceEEeeeec--CCCCceEEEECCCCCEEEEEEcC--------CCeEEEEEE
Confidence 466777777666655677766665421 3333222110 01123356799999987554322 146777777
Q ss_pred CC-CCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeee----EEEcCCCCCcccCC
Q 008927 229 NG-QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR----VCVAGFDPTIVESP 303 (548)
Q Consensus 229 ~~-g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~----~~l~~~~~~~~~~~ 303 (548)
+. +...+......+...-....++|||++|+ +... ....|++++++..|.+... ..+..+ ...
T Consensus 110 ~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~-v~~~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p 177 (330)
T PRK11028 110 DKDGIPVAPIQIIEGLEGCHSANIDPDNRTLW-VPCL------KEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGP 177 (330)
T ss_pred CCCCCCCCceeeccCCCcccEeEeCCCCCEEE-EeeC------CCCEEEEEEECCCCcccccCCCceecCCC-----CCC
Confidence 53 32100111111211112346899999875 4422 2457999999754543210 111111 234
Q ss_pred cCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecc---cccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCe
Q 008927 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (548)
Q Consensus 304 ~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~---~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~ 380 (548)
....|+|||+++|+.+...+.-.+|.++..+++.+.+.. .......+.|.. .+.+.| +++.||......+.
T Consensus 178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~i~~~p---dg~~lyv~~~~~~~ 251 (330)
T PRK11028 178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA---DIHITP---DGRHLYACDRTASL 251 (330)
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce---eEEECC---CCCEEEEecCCCCe
Confidence 567999999966666553555555555543455433211 111122233321 234544 77777654222344
Q ss_pred EEEEEEECCCCceEeec---CCC-ceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 381 SYLGILDDFGHSLSLLD---IPF-TDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 381 ~~L~~~dl~~g~~~~l~---~~~-~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
-.++.++.+++..+.+. .+. ..--.+++|+++|++.. .....-.+|.+|.+++.+
T Consensus 252 I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~-~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 252 ISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAG-QKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEE-ccCCcEEEEEEcCCCCcE
Confidence 44444544444433222 111 01112367888877654 323333455555555553
No 44
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=1.1e-05 Score=79.00 Aligned_cols=246 Identities=17% Similarity=0.169 Sum_probs=140.2
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee--
Q 008927 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-- 241 (548)
Q Consensus 164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~-- 241 (548)
++.||++++++..++...+.... ......-+.|+|++++|+.+.+..++ ..-.-|.||-+.|. .+.|..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~--~~~nptyl~~~~~~~~LY~v~~~~~~----ggvaay~iD~~~G~---Lt~ln~~~ 85 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVA--ELGNPTYLAVNPDQRHLYVVNEPGEE----GGVAAYRIDPDDGR---LTFLNRQT 85 (346)
T ss_pred CCceEEEEEeCcccccchhhhcc--ccCCCceEEECCCCCEEEEEEecCCc----CcEEEEEEcCCCCe---EEEeeccc
Confidence 56787777764223322211110 01233456799999988776554321 23456788877787 555532
Q ss_pred --cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEE-E--cCCCCC-ccc--CCcCceECcCCc
Q 008927 242 --GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-V--AGFDPT-IVE--SPTEPKWSSKGE 313 (548)
Q Consensus 242 --~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~-l--~~~~~~-~~~--~~~~~~wspDG~ 313 (548)
+.. -...++++||+.|+ ++.-+ ...|-+..+..+|.+..... + .+..+. +.+ .+....++|||+
T Consensus 86 ~~g~~-p~yvsvd~~g~~vf-~AnY~------~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~ 157 (346)
T COG2706 86 LPGSP-PCYVSVDEDGRFVF-VANYH------SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR 157 (346)
T ss_pred cCCCC-CeEEEECCCCCEEE-EEEcc------CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC
Confidence 222 14457999999765 55322 46788888876776543322 1 111000 001 145567899999
Q ss_pred EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce
Q 008927 314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 393 (548)
Q Consensus 314 L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~ 393 (548)
++++.|. |...++.++++.|+.+...+... .| -.|.+...|-| +++..|+..+-++.-.++-+|...|+.
T Consensus 158 ~l~v~DL--G~Dri~~y~~~dg~L~~~~~~~v---~~--G~GPRHi~FHp---n~k~aY~v~EL~stV~v~~y~~~~g~~ 227 (346)
T COG2706 158 YLVVPDL--GTDRIFLYDLDDGKLTPADPAEV---KP--GAGPRHIVFHP---NGKYAYLVNELNSTVDVLEYNPAVGKF 227 (346)
T ss_pred EEEEeec--CCceEEEEEcccCcccccccccc---CC--CCCcceEEEcC---CCcEEEEEeccCCEEEEEEEcCCCceE
Confidence 8888887 44456666666777655442211 01 12334456654 677777666677888888888877887
Q ss_pred Eeec----CC--Cce---eEee--eecCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 008927 394 SLLD----IP--FTD---IDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 437 (548)
Q Consensus 394 ~~l~----~~--~~~---~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~ 437 (548)
+.|. .| |.. ...+ ++||+.||+. +.....=.+|.+|..++++.
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas-NRg~dsI~~f~V~~~~g~L~ 281 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS-NRGHDSIAVFSVDPDGGKLE 281 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCCCCEEEEe-cCCCCeEEEEEEcCCCCEEE
Confidence 7664 23 322 2223 6777766543 33333335567777777653
No 45
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.70 E-value=1.8e-05 Score=83.48 Aligned_cols=256 Identities=11% Similarity=0.052 Sum_probs=144.8
Q ss_pred EECCEEEEEeCCC----CeEEEEeCCCCCCCc-eecCCC---CCCC-CceecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 008927 152 IFGDTVIFSNYKD----QRLYKHSIDSKDSSP-LPITPD---YGEP-LVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (548)
Q Consensus 152 ~~~~~i~F~~~~~----~~Ly~~~~~~~~~~~-~~lT~~---~~~~-~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~ 222 (548)
..|+..+|..... ..+|+.......++. +.|... .++. ......+.+||||++|+|.....+. ....
T Consensus 76 ~~g~~~y~~~~~~~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~----e~~~ 151 (414)
T PF02897_consen 76 RRGGYYYYSRNQGGKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGS----EWYT 151 (414)
T ss_dssp EETTEEEEEEE-SS-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTS----SEEE
T ss_pred EECCeEEEEEEcCCCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCC----ceEE
Confidence 4577777764332 257777766100332 333221 0011 1233467899999999997554332 3678
Q ss_pred EEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCC---CCCCceEEEEEecCCCceeeeEEEcCCCCCc
Q 008927 223 IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM---PWDKAELWVGYISENGDVYKRVCVAGFDPTI 299 (548)
Q Consensus 223 l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~---p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~ 299 (548)
|+++|+++|+. ......... .....|++||+.++|..++.... .-...+||...+.. +. .+..++......
T Consensus 152 l~v~Dl~tg~~--l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt-~~-~~d~lvfe~~~~- 225 (414)
T PF02897_consen 152 LRVFDLETGKF--LPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGT-PQ-SEDELVFEEPDE- 225 (414)
T ss_dssp EEEEETTTTEE--EEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS--G-GG-EEEEC-TTC-
T ss_pred EEEEECCCCcC--cCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCC-Ch-HhCeeEEeecCC-
Confidence 99999999961 111112221 22379999999999998765432 00145799998864 22 222344443211
Q ss_pred ccC-CcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC-----eeEeecccccccCCCcccccCcceeeeeecCCCCEEE
Q 008927 300 VES-PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN-----EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIA 372 (548)
Q Consensus 300 ~~~-~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g-----~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~ 372 (548)
.. .....+++||+ |++.+..+.....+|.+++..+ +.+.|.+.... . .+.... .++.++
T Consensus 226 -~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~----~------~~~v~~---~~~~~y 291 (414)
T PF02897_consen 226 -PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG----V------EYYVDH---HGDRLY 291 (414)
T ss_dssp -TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-----------EEEEEE---ETTEEE
T ss_pred -CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc----e------EEEEEc---cCCEEE
Confidence 11 33567899999 5544554222478999998775 45666532110 0 011111 467788
Q ss_pred EEEEeC-CeEEEEEEECCCCc---eE-eecCCC--ceeEeeeecCCEEEEEEecCCCCCeEEEEEcC
Q 008927 373 CSYRQN-GRSYLGILDDFGHS---LS-LLDIPF--TDIDNITLGNDCLFVEGASGVEPSSVAKVTLD 432 (548)
Q Consensus 373 ~~~~~~-g~~~L~~~dl~~g~---~~-~l~~~~--~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~ 432 (548)
+..+.+ ....|+.++++... ++ .|..+. ..+..+...+++|++.... +....|.++++.
T Consensus 292 i~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~-~~~~~l~v~~~~ 357 (414)
T PF02897_consen 292 ILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE-NGSSRLRVYDLD 357 (414)
T ss_dssp EEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEE-TTEEEEEEEETT
T ss_pred EeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEE-CCccEEEEEECC
Confidence 777754 46789999998765 33 333322 2466677778888776654 456789999987
No 46
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.70 E-value=3.9e-05 Score=78.19 Aligned_cols=219 Identities=11% Similarity=0.077 Sum_probs=114.3
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id 227 (548)
.+.++++.|+-.+..++.|.+++++.+ +.. +.+..... ........++|||+.++.. ... .+.|+++|
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~-g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~-~~~-------~~~v~v~d 154 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKD-GIPVAPIQIIEG--LEGCHSANIDPDNRTLWVP-CLK-------EDRIRLFT 154 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCC-CCCCCceeeccC--CCcccEeEeCCCCCEEEEe-eCC-------CCEEEEEE
Confidence 455667777666666777877777532 222 11111100 0112334689999987554 322 24688888
Q ss_pred CCC-CCccC----cEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC-CCceeeeEEEcCCCCCc--
Q 008927 228 LNG-QNIQE----PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPTI-- 299 (548)
Q Consensus 228 l~~-g~~~~----~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~-~g~~~~~~~l~~~~~~~-- 299 (548)
+++ +.... ...+..+. .-....|+|||++|+ +... ....|.+++++. .++++....+...+...
T Consensus 155 ~~~~g~l~~~~~~~~~~~~g~-~p~~~~~~pdg~~ly-v~~~------~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTVEGA-GPRHMVFHPNQQYAY-CVNE------LNSSVDVWQLKDPHGEIECVQTLDMMPADFSD 226 (330)
T ss_pred ECCCCcccccCCCceecCCCC-CCceEEECCCCCEEE-EEec------CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence 875 32100 01111122 123458999999775 5422 246788888873 23332222221111000
Q ss_pred ccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC
Q 008927 300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (548)
Q Consensus 300 ~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g 379 (548)
........++|||+.+|++++..+...+|.++.+++..+.+..... +. ....+.+.| ++++|+.+...++
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~-----~p~~~~~~~---dg~~l~va~~~~~ 296 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ET-----QPRGFNIDH---SGKYLIAAGQKSH 296 (330)
T ss_pred CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cc-----cCCceEECC---CCCEEEEEEccCC
Confidence 0112236689999966677765666667776654444332211000 10 112245554 7788876654466
Q ss_pred eEEEEEEECCCCceEee
Q 008927 380 RSYLGILDDFGHSLSLL 396 (548)
Q Consensus 380 ~~~L~~~dl~~g~~~~l 396 (548)
.-.++.+|.++|.++.+
T Consensus 297 ~v~v~~~~~~~g~l~~~ 313 (330)
T PRK11028 297 HISVYEIDGETGLLTEL 313 (330)
T ss_pred cEEEEEEcCCCCcEEEc
Confidence 67777777777766554
No 47
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.68 E-value=1.2e-05 Score=82.60 Aligned_cols=260 Identities=14% Similarity=0.103 Sum_probs=130.0
Q ss_pred EECCEEEEEeCC---CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 152 IFGDTVIFSNYK---DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 152 ~~~~~i~F~~~~---~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
++++.||-.+.. .+.|..+.++.+.+..+.+..... ....-....++|||+.|+.. .-.. ..+.++++
T Consensus 46 ~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~va-ny~~-------g~v~v~~l 116 (345)
T PF10282_consen 46 PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVA-NYGG-------GSVSVFPL 116 (345)
T ss_dssp TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEE-ETTT-------TEEEEEEE
T ss_pred eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEE-EccC-------CeEEEEEc
Confidence 355566666653 456655554431134444322100 01112245689999986553 3321 35666666
Q ss_pred CC-CCccCcEEeee----cC-------CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCC-ceeeeEEEcCC
Q 008927 229 NG-QNIQEPKVLVS----GS-------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG-DVYKRVCVAGF 295 (548)
Q Consensus 229 ~~-g~~~~~~~L~~----~~-------~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g-~~~~~~~l~~~ 295 (548)
+. |.......+.. ++ ...-...++|||++|+ +. +. ....|++++++..+ ++.....+.-.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~-v~-dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~ 189 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY-VP-DL-----GADRVYVYDIDDDTGKLTPVDSIKVP 189 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE-EE-ET-----TTTEEEEEEE-TTS-TEEEEEEEECS
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE-EE-ec-----CCCEEEEEEEeCCCceEEEeeccccc
Confidence 54 44111111211 11 1122457899999885 54 22 24589999997533 24332222211
Q ss_pred CCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecc---cccccCCCcccccCcceeeeeecCCCCEE
Q 008927 296 DPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLI 371 (548)
Q Consensus 296 ~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~---~~~d~~~p~w~~~~~~~~~~~~~~d~~~l 371 (548)
. + .......|+|||+ +|++.+. ++.-.+|.++..+++.+.+.. ......... ......++| |++.|
T Consensus 190 ~-G--~GPRh~~f~pdg~~~Yv~~e~-s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~i~isp---dg~~l 259 (345)
T PF10282_consen 190 P-G--SGPRHLAFSPDGKYAYVVNEL-SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN---APAEIAISP---DGRFL 259 (345)
T ss_dssp T-T--SSEEEEEE-TTSSEEEEEETT-TTEEEEEEEETTTTEEEEEEEEESCETTSCSSS---SEEEEEE-T---TSSEE
T ss_pred c-C--CCCcEEEEcCCcCEEEEecCC-CCcEEEEeecccCCceeEEEEeeeccccccccC---CceeEEEec---CCCEE
Confidence 1 1 3345688999999 5555554 666667777655676544321 111111111 112344554 77777
Q ss_pred EEEEEeCCeEEEEEEECCCCceEeecC---CCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCceee
Q 008927 372 ACSYRQNGRSYLGILDDFGHSLSLLDI---PFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKA 438 (548)
Q Consensus 372 ~~~~~~~g~~~L~~~dl~~g~~~~l~~---~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~ 438 (548)
|++......-.++.+|.++|+++.+.. ....-..+ +++++.|++.. .....-.+|.+|.++|.++.
T Consensus 260 yvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~-~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 260 YVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVAN-QDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp EEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEE-TTTTEEEEEEEETTTTEEEE
T ss_pred EEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEe-cCCCeEEEEEEeCCCCcEEE
Confidence 765433344556666667788776542 11112233 67888776544 33334566677877887643
No 48
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.68 E-value=6.3e-05 Score=76.23 Aligned_cols=253 Identities=11% Similarity=0.035 Sum_probs=129.5
Q ss_pred eeEEECCEEEEEeC---------CCCeEEEEeCCCCCCCc-eecCCCCCCCC----ceecceeeCCCCCEEEEEEeccCC
Q 008927 149 AFRIFGDTVIFSNY---------KDQRLYKHSIDSKDSSP-LPITPDYGEPL----VSYADGIFDPRFNRYVTVREDRRQ 214 (548)
Q Consensus 149 ~~~~~~~~i~F~~~---------~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~----~~~~~~~~SpDG~~i~~v~~~~~~ 214 (548)
..++|++.||-.+. ++..|-++|+.+ .++ ..|.... .+. ..-..+.+||||++|+...++
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~~~~~~i~~p~-~p~~~~~~~~~~~~ls~dgk~l~V~n~~--- 125 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--HLPIADIELPE-GPRFLVGTYPWMTSLTPDNKTLLFYQFS--- 125 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECcc--CcEEeEEccCC-CchhhccCccceEEECCCCCEEEEecCC---
Confidence 47788888777765 566888899887 433 3333211 011 112257899999987654333
Q ss_pred CCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceee-eEEE-
Q 008927 215 DALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCV- 292 (548)
Q Consensus 215 ~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~-~~~l- 292 (548)
..+.+-++|+++++. ...+.- ++...-...+.++..+.+ . ...+..+.++.+|+... ...+
T Consensus 126 ----p~~~V~VvD~~~~kv--v~ei~v-p~~~~vy~t~e~~~~~~~-~---------Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 126 ----PSPAVGVVDLEGKAF--VRMMDV-PDCYHIFPTANDTFFMHC-R---------DGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred ----CCCEEEEEECCCCcE--EEEEeC-CCCcEEEEecCCccEEEe-e---------cCceEEEEecCCCceEEeeeeee
Confidence 136799999999872 112221 111111112222211110 0 11222223333333111 1112
Q ss_pred cCCCCCcccCCcCceECc-CCcEEEEEeCCCCeeeEEEEeccCCeeEeeccc---ccccCCCcccccCc-ceeeeeecCC
Q 008927 293 AGFDPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPLWVFGIN-SYEIIQSHGE 367 (548)
Q Consensus 293 ~~~~~~~~~~~~~~~wsp-DG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~---~~d~~~p~w~~~~~-~~~~~~~~~d 367 (548)
.+.+ . .-...|.+++ ||+.+|++.. ..|+.+|+.+.+...+.+- ........|.++.. ...+.+ +
T Consensus 189 ~~~~-~--~v~~rP~~~~~dg~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~---d 258 (352)
T TIGR02658 189 HPED-E--YLINHPAYSNKSGRLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR---A 258 (352)
T ss_pred cCCc-c--ccccCCceEcCCCcEEEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC---C
Confidence 1211 1 1224455566 8888888765 4799999766544332210 00111124555441 234443 7
Q ss_pred CCEEEEEEEe-------CCeEEEEEEECCCCceE-eecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 368 KNLIACSYRQ-------NGRSYLGILDDFGHSLS-LLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 368 ~~~l~~~~~~-------~g~~~L~~~dl~~g~~~-~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
++++|+.... ++-.+++++|.+++++. .+..+..... .+++|++-++++.+. ....|.++|..+++.
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~--~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST--GDKTLYIFDAETGKE 334 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC--CCCcEEEEECcCCeE
Confidence 8888875431 23368999999988754 4444322111 247888844454442 245688999887753
No 49
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=1e-05 Score=81.16 Aligned_cols=199 Identities=12% Similarity=0.121 Sum_probs=120.6
Q ss_pred ccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCc-ccCC---CCCCccccceeeCCeeeEEECCEEEEEeCCCC
Q 008927 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPS-DITP---KEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ 165 (548)
Q Consensus 90 ~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~-~lt~---~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~ 165 (548)
.|..+++.|+..+.-+.+. +|+..|+.++- +.. .|+. ..+.++. ..|.+.|...+|++.+..
T Consensus 215 ~I~sv~FHp~~plllvaG~---d~~lrifqvDG----k~N~~lqS~~l~~fPi~~-------a~f~p~G~~~i~~s~rrk 280 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGL---DGTLRIFQVDG----KVNPKLQSIHLEKFPIQK-------AEFAPNGHSVIFTSGRRK 280 (514)
T ss_pred CceEEEecCCCceEEEecC---CCcEEEEEecC----ccChhheeeeeccCccce-------eeecCCCceEEEecccce
Confidence 4555666665556555543 46777887742 222 2222 2333332 257788887888887778
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc
Q 008927 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (548)
Q Consensus 166 ~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~ 245 (548)
-+|.+|+.. .+..+|.+..+-..-.+..+..|||++.|++. .. ...|+++...+++ ..--..-.+.
T Consensus 281 y~ysyDle~--ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~-G~--------~G~I~lLhakT~e---li~s~KieG~ 346 (514)
T KOG2055|consen 281 YLYSYDLET--AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIA-GN--------NGHIHLLHAKTKE---LITSFKIEGV 346 (514)
T ss_pred EEEEeeccc--cccccccCCCCcccchhheeEecCCCCeEEEc-cc--------CceEEeehhhhhh---hhheeeeccE
Confidence 899999987 66666655321011234567899999988774 22 2589999888876 2111223445
Q ss_pred eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCee
Q 008927 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 325 (548)
Q Consensus 246 ~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~ 325 (548)
+....||.||+.|. ++- ...++|+.++... .. ..+-...+. ..-..+.-|++|+++.+... .|.-
T Consensus 347 v~~~~fsSdsk~l~-~~~-------~~GeV~v~nl~~~-~~-~~rf~D~G~----v~gts~~~S~ng~ylA~GS~-~GiV 411 (514)
T KOG2055|consen 347 VSDFTFSSDSKELL-ASG-------GTGEVYVWNLRQN-SC-LHRFVDDGS----VHGTSLCISLNGSYLATGSD-SGIV 411 (514)
T ss_pred EeeEEEecCCcEEE-EEc-------CCceEEEEecCCc-ce-EEEEeecCc----cceeeeeecCCCceEEeccC-cceE
Confidence 77889999998775 441 2358999999743 21 112222211 22345666889984444333 6999
Q ss_pred eEEEEe
Q 008927 326 NLHKWI 331 (548)
Q Consensus 326 ~Ly~~d 331 (548)
+||-.+
T Consensus 412 NIYd~~ 417 (514)
T KOG2055|consen 412 NIYDGN 417 (514)
T ss_pred EEeccc
Confidence 998754
No 50
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.47 E-value=5.6e-05 Score=73.64 Aligned_cols=210 Identities=15% Similarity=0.178 Sum_probs=118.2
Q ss_pred ceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEEEe
Q 008927 93 GTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS 171 (548)
Q Consensus 93 ~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~ 171 (548)
.|.+.+ .+.+||+... ...|++++..+ ....+...+- + .|-.+...++.|++... ..+.+++
T Consensus 4 gp~~d~~~g~l~~~D~~-----~~~i~~~~~~~--~~~~~~~~~~----~----~G~~~~~~~g~l~v~~~--~~~~~~d 66 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIP-----GGRIYRVDPDT--GEVEVIDLPG----P----NGMAFDRPDGRLYVADS--GGIAVVD 66 (246)
T ss_dssp EEEEETTTTEEEEEETT-----TTEEEEEETTT--TEEEEEESSS----E----EEEEEECTTSEEEEEET--TCEEEEE
T ss_pred ceEEECCCCEEEEEEcC-----CCEEEEEECCC--CeEEEEecCC----C----ceEEEEccCCEEEEEEc--CceEEEe
Confidence 578888 8999999743 23577776652 2332221110 1 11122223567888773 4466668
Q ss_pred CCCCCCCceecCCCC-CC-CCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeee
Q 008927 172 IDSKDSSPLPITPDY-GE-PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFP 249 (548)
Q Consensus 172 ~~~~~~~~~~lT~~~-~~-~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p 249 (548)
+.+ ++.+.+.... .. ...+..+..++|||+ |++...............||+++.+ ++ .+.+..+-..-...
T Consensus 67 ~~~--g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pNGi 139 (246)
T PF08450_consen 67 PDT--GKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK---VTVVADGLGFPNGI 139 (246)
T ss_dssp TTT--TEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE---EEEEEEEESSEEEE
T ss_pred cCC--CcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce---EEEEecCcccccce
Confidence 876 6555554321 11 235677899999998 5554332211111111789999999 66 66666554444567
Q ss_pred EECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc-eeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEE
Q 008927 250 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 328 (548)
Q Consensus 250 ~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~-~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly 328 (548)
.|||||+.|++.. . ....||.++++.++. +...+.+...... ....-......+|.||+..-. . ..|+
T Consensus 140 ~~s~dg~~lyv~d-s------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~l~va~~~-~--~~I~ 208 (246)
T PF08450_consen 140 AFSPDGKTLYVAD-S------FNGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGNLWVADWG-G--GRIV 208 (246)
T ss_dssp EEETTSSEEEEEE-T------TTTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-EEEEEET-T--TEEE
T ss_pred EECCcchheeecc-c------ccceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCCEEEEEcC-C--CEEE
Confidence 8999999886543 2 246799999975443 4444444322100 011334678888876655332 2 4788
Q ss_pred EEeccCCeeE
Q 008927 329 KWIESNNEVL 338 (548)
Q Consensus 329 ~~d~~~g~~~ 338 (548)
+++++ |+..
T Consensus 209 ~~~p~-G~~~ 217 (246)
T PF08450_consen 209 VFDPD-GKLL 217 (246)
T ss_dssp EEETT-SCEE
T ss_pred EECCC-ccEE
Confidence 99987 5543
No 51
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.46 E-value=1.1e-05 Score=75.42 Aligned_cols=138 Identities=13% Similarity=0.136 Sum_probs=81.7
Q ss_pred eeEEECCEEEEEeCC-----------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCC
Q 008927 149 AFRIFGDTVIFSNYK-----------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDAL 217 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~-----------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~ 217 (548)
.|.++|+.|+..-.. ...||.++..+ .....+.-.. ...+.++.|+|+|+.++.+....+
T Consensus 12 ~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--~~~~~i~l~~---~~~I~~~~WsP~g~~favi~g~~~---- 82 (194)
T PF08662_consen 12 HWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--IPVESIELKK---EGPIHDVAWSPNGNEFAVIYGSMP---- 82 (194)
T ss_pred EecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC--CccceeeccC---CCceEEEEECcCCCEEEEEEccCC----
Confidence 467777776665331 13788887765 4444443321 123788999999999877643221
Q ss_pred CceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCC
Q 008927 218 NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (548)
Q Consensus 218 ~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~ 297 (548)
..+-..|+++.. ...+ +........|||+|+.|+..... + ...+|.+.|++. .+ .+.....
T Consensus 83 ---~~v~lyd~~~~~---i~~~--~~~~~n~i~wsP~G~~l~~~g~~--n---~~G~l~~wd~~~-~~----~i~~~~~- 143 (194)
T PF08662_consen 83 ---AKVTLYDVKGKK---IFSF--GTQPRNTISWSPDGRFLVLAGFG--N---LNGDLEFWDVRK-KK----KISTFEH- 143 (194)
T ss_pred ---cccEEEcCcccE---eEee--cCCCceEEEECCCCCEEEEEEcc--C---CCcEEEEEECCC-CE----Eeecccc-
Confidence 245566665332 2222 22333456899999999865532 1 135788889873 32 1112111
Q ss_pred CcccCCcCceECcCCc-EEEE
Q 008927 298 TIVESPTEPKWSSKGE-LFFV 317 (548)
Q Consensus 298 ~~~~~~~~~~wspDG~-L~~~ 317 (548)
.......|||||+ ++..
T Consensus 144 ---~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 144 ---SDATDVEWSPDGRYLATA 161 (194)
T ss_pred ---CcEEEEEEcCCCCEEEEE
Confidence 3456789999999 5544
No 52
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.45 E-value=7.3e-05 Score=72.79 Aligned_cols=224 Identities=15% Similarity=0.146 Sum_probs=118.7
Q ss_pred eeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeC-CCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFD-PRFNRYVTVREDRRQDALNSTTEIVAI 226 (548)
Q Consensus 148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~S-pDG~~i~~v~~~~~~~~~~~~~~l~~i 226 (548)
..|.+..+.|+|++-..++||++++++ ++.+.+... . .....+. +||. |++. ... .+.++
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~--~~~~~~~~~----~--~~G~~~~~~~g~-l~v~-~~~---------~~~~~ 65 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDT--GEVEVIDLP----G--PNGMAFDRPDGR-LYVA-DSG---------GIAVV 65 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTT--TEEEEEESS----S--EEEEEEECTTSE-EEEE-ETT---------CEEEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCC--CeEEEEecC----C--CceEEEEccCCE-EEEE-EcC---------ceEEE
Confidence 455555789999998889999999987 544444332 1 2334455 6654 3332 321 34556
Q ss_pred ECCCCCccCcEEeeec---C-C--ceeeeEECCCCCEEEEEEecCCCCCCCC--ceEEEEEecCCCceeeeEEEcCCCCC
Q 008927 227 ALNGQNIQEPKVLVSG---S-D--FYAFPRMDPRGERMAWIEWHHPNMPWDK--AELWVGYISENGDVYKRVCVAGFDPT 298 (548)
Q Consensus 227 dl~~g~~~~~~~L~~~---~-~--~~~~p~~SPDGk~La~~~~~~~~~p~~~--~~L~v~~~~~~g~~~~~~~l~~~~~~ 298 (548)
|+.+++ .+.+... . . ......++|||+ |.+.. ......... ..||.++.+ +++ ..+...-
T Consensus 66 d~~~g~---~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~-~~~~~~~~~~~g~v~~~~~~--~~~---~~~~~~~-- 133 (246)
T PF08450_consen 66 DPDTGK---VTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTD-SGGGGASGIDPGSVYRIDPD--GKV---TVVADGL-- 133 (246)
T ss_dssp ETTTTE---EEEEEEEETTCSCTEEEEEEEE-TTS--EEEEE-ECCBCTTCGGSEEEEEEETT--SEE---EEEEEEE--
T ss_pred ecCCCc---EEEEeeccCCCcccCCCceEEEcCCCC-EEEEe-cCCCccccccccceEEECCC--CeE---EEEecCc--
Confidence 999987 6666543 1 1 234668999998 54443 222111112 578888875 432 2222211
Q ss_pred cccCCcCceECcCCcEEEEEeCCCCeeeEEEEecc--CCee--Ee-ecccccccCCCcccccCcceeeeeecCCCCEEEE
Q 008927 299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES--NNEV--LA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC 373 (548)
Q Consensus 299 ~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~--~g~~--~~-l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~ 373 (548)
.....+.|+|||+.+|++|... ..|++++++ ++++ +. +.......+.| ..+... ..+.|++
T Consensus 134 --~~pNGi~~s~dg~~lyv~ds~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~p------DG~~vD----~~G~l~v 199 (246)
T PF08450_consen 134 --GFPNGIAFSPDGKTLYVADSFN--GRIWRFDLDADGGELSNRRVFIDFPGGPGYP------DGLAVD----SDGNLWV 199 (246)
T ss_dssp --SSEEEEEEETTSSEEEEEETTT--TEEEEEEEETTTCCEEEEEEEEE-SSSSCEE------EEEEEB----TTS-EEE
T ss_pred --ccccceEECCcchheeeccccc--ceeEEEeccccccceeeeeeEEEcCCCCcCC------CcceEc----CCCCEEE
Confidence 2345689999999555555423 358888774 3322 12 21111111111 113342 2345655
Q ss_pred EEEeCCeEEEEEEECCCCceEeecCCCceeEee---eecCCEEEEEEe
Q 008927 374 SYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGA 418 (548)
Q Consensus 374 ~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~~---s~d~~~l~~~~s 418 (548)
... +...|+++|.++..+..+..+......+ -++.+.||++.+
T Consensus 200 a~~--~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 200 ADW--GGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEE--TTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EEc--CCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 433 3457889998844455666663344433 245577776653
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.43 E-value=0.00025 Score=68.66 Aligned_cols=243 Identities=13% Similarity=0.105 Sum_probs=132.4
Q ss_pred CCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCe
Q 008927 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR 166 (548)
Q Consensus 88 ~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~ 166 (548)
...+..+.++| ++.++... ++|...+|..... .....+......+ ....|.++++.|+... .++.
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~----~~g~i~i~~~~~~--~~~~~~~~~~~~i-------~~~~~~~~~~~l~~~~-~~~~ 74 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGS----GDGTIKVWDLETG--ELLRTLKGHTGPV-------RDVAASADGTYLASGS-SDKT 74 (289)
T ss_pred CCCEEEEEEcCCCCEEEEee----cCcEEEEEEeeCC--CcEEEEecCCcce-------eEEEECCCCCEEEEEc-CCCe
Confidence 35677889998 66665543 2477777766432 1222222221111 1235666665665554 4678
Q ss_pred EEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCce
Q 008927 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY 246 (548)
Q Consensus 167 Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~ 246 (548)
|++.++..+ .....+... ......+.|+|+++.++.. .. ...|..+|+.+++. ...+.......
T Consensus 75 i~i~~~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~~~~~-~~--------~~~i~~~~~~~~~~--~~~~~~~~~~i 138 (289)
T cd00200 75 IRLWDLETG-ECVRTLTGH----TSYVSSVAFSPDGRILSSS-SR--------DKTIKVWDVETGKC--LTTLRGHTDWV 138 (289)
T ss_pred EEEEEcCcc-cceEEEecc----CCcEEEEEEcCCCCEEEEe-cC--------CCeEEEEECCCcEE--EEEeccCCCcE
Confidence 888888752 233444432 1245667899997655443 31 14688889886651 22333233446
Q ss_pred eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCee
Q 008927 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 325 (548)
Q Consensus 247 ~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~ 325 (548)
....|+|+++.|+... ....|++.++.. ++. ...+.... ..+..+.|+|+++ +++.+. .+
T Consensus 139 ~~~~~~~~~~~l~~~~--------~~~~i~i~d~~~-~~~--~~~~~~~~----~~i~~~~~~~~~~~l~~~~~--~~-- 199 (289)
T cd00200 139 NSVAFSPDGTFVASSS--------QDGTIKLWDLRT-GKC--VATLTGHT----GEVNSVAFSPDGEKLLSSSS--DG-- 199 (289)
T ss_pred EEEEEcCcCCEEEEEc--------CCCcEEEEEccc-ccc--ceeEecCc----cccceEEECCCcCEEEEecC--CC--
Confidence 7788999988665332 134688888873 331 22333322 4577899999998 555443 33
Q ss_pred eEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce
Q 008927 326 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 393 (548)
Q Consensus 326 ~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~ 393 (548)
.|..++...++....... ... ......+.+ + +.+++....++ .|+++|+.+++.
T Consensus 200 ~i~i~d~~~~~~~~~~~~-----~~~---~i~~~~~~~---~-~~~~~~~~~~~--~i~i~~~~~~~~ 253 (289)
T cd00200 200 TIKLWDLSTGKCLGTLRG-----HEN---GVNSVAFSP---D-GYLLASGSEDG--TIRVWDLRTGEC 253 (289)
T ss_pred cEEEEECCCCceecchhh-----cCC---ceEEEEEcC---C-CcEEEEEcCCC--cEEEEEcCCcee
Confidence 466777766554332211 000 111234542 3 45555554344 466667765543
No 54
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.37 E-value=0.00036 Score=71.42 Aligned_cols=199 Identities=15% Similarity=0.184 Sum_probs=101.1
Q ss_pred cC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEEEeCCCC
Q 008927 97 DG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSK 175 (548)
Q Consensus 97 sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~~~~~ 175 (548)
+| |++|.|- .|++++.+.-... ......|... ....| ..|+|.|-+|+=- +..+.|-+-+...
T Consensus 27 dpkgd~ilY~------nGksv~ir~i~~~-~~~~iYtEH~--~~vtV-----AkySPsG~yiASG-D~sG~vRIWdtt~- 90 (603)
T KOG0318|consen 27 DPKGDNILYT------NGKSVIIRNIDNP-ASVDIYTEHA--HQVTV-----AKYSPSGFYIASG-DVSGKVRIWDTTQ- 90 (603)
T ss_pred CCCCCeEEEe------CCCEEEEEECCCc-cceeeecccc--ceeEE-----EEeCCCceEEeec-CCcCcEEEEeccC-
Confidence 56 8888885 4888777653221 1233333321 11222 2466665433322 2234332224332
Q ss_pred CCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE-------------------CCCCCccCc
Q 008927 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA-------------------LNGQNIQEP 236 (548)
Q Consensus 176 ~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id-------------------l~~g~~~~~ 236 (548)
+...|-........++.|+.|+.|+++|+.+-|.++ +..+.+.+| +.-.. +.
T Consensus 91 --~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre-----rfg~~F~~DSG~SvGei~GhSr~ins~~~KpsR--Pf 161 (603)
T KOG0318|consen 91 --KEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE-----RFGHVFLWDSGNSVGEITGHSRRINSVDFKPSR--PF 161 (603)
T ss_pred --cceeeeeeeeecccccccceeCCCCcEEEEEecCcc-----ceeEEEEecCCCccceeeccceeEeeeeccCCC--ce
Confidence 111121110001246789999999999999866542 223333333 33222 12
Q ss_pred EEeeecC----------------------CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcC
Q 008927 237 KVLVSGS----------------------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG 294 (548)
Q Consensus 237 ~~L~~~~----------------------~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~ 294 (548)
|.++.+. .|+...++||||++++=+.. ..+++++|=.. |+ ..-.+.+
T Consensus 162 Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs--------Dgki~iyDGkt-ge--~vg~l~~ 230 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS--------DGKIYIYDGKT-GE--KVGELED 230 (603)
T ss_pred EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC--------CccEEEEcCCC-cc--EEEEecC
Confidence 3333222 23345589999998774442 35789998653 43 1223442
Q ss_pred CCCCcccCCcCceECcCCc-EEEEE-eCCCCeeeEEEEeccCCee
Q 008927 295 FDPTIVESPTEPKWSSKGE-LFFVT-DRKNGFWNLHKWIESNNEV 337 (548)
Q Consensus 295 ~~~~~~~~~~~~~wspDG~-L~~~s-d~~~g~~~Ly~~d~~~g~~ 337 (548)
.+ ....++..+.|+||++ ++-++ |. .+-.+|.+++++
T Consensus 231 ~~-aHkGsIfalsWsPDs~~~~T~SaDk-----t~KIWdVs~~sl 269 (603)
T KOG0318|consen 231 SD-AHKGSIFALSWSPDSTQFLTVSADK-----TIKIWDVSTNSL 269 (603)
T ss_pred CC-CccccEEEEEECCCCceEEEecCCc-----eEEEEEeeccce
Confidence 22 1116788999999999 55443 33 233445555554
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.35 E-value=0.00063 Score=65.78 Aligned_cols=233 Identities=12% Similarity=0.129 Sum_probs=130.2
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id 227 (548)
.|+++++.|++.. .++.|++.++.. ++. ..+... ......+.|+|+++.|++...+ ..|+++|
T Consensus 16 ~~~~~~~~l~~~~-~~g~i~i~~~~~--~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~---------~~i~i~~ 79 (289)
T cd00200 16 AFSPDGKLLATGS-GDGTIKVWDLET--GELLRTLKGH----TGPVRDVAASADGTYLASGSSD---------KTIRLWD 79 (289)
T ss_pred EEcCCCCEEEEee-cCcEEEEEEeeC--CCcEEEEecC----CcceeEEEECCCCCEEEEEcCC---------CeEEEEE
Confidence 4666666666654 467787778765 333 334332 1234567899999887775432 4688889
Q ss_pred CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (548)
Q Consensus 228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ 307 (548)
+.+++. ...+...........|+|+++.|+ ... ....|.+.++.. ++ ....+.... ..+....
T Consensus 80 ~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~-~~~-------~~~~i~~~~~~~-~~--~~~~~~~~~----~~i~~~~ 142 (289)
T cd00200 80 LETGEC--VRTLTGHTSYVSSVAFSPDGRILS-SSS-------RDKTIKVWDVET-GK--CLTTLRGHT----DWVNSVA 142 (289)
T ss_pred cCcccc--eEEEeccCCcEEEEEEcCCCCEEE-Eec-------CCCeEEEEECCC-cE--EEEEeccCC----CcEEEEE
Confidence 887641 344443333566778999977554 442 135788889873 33 123333322 4577889
Q ss_pred ECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927 308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (548)
Q Consensus 308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d 387 (548)
|+|++++++.... ++ .|+.+|+.+++........ .. ......+.+ +++.|++... + ..+.++|
T Consensus 143 ~~~~~~~l~~~~~-~~--~i~i~d~~~~~~~~~~~~~---~~-----~i~~~~~~~---~~~~l~~~~~-~--~~i~i~d 205 (289)
T cd00200 143 FSPDGTFVASSSQ-DG--TIKLWDLRTGKCVATLTGH---TG-----EVNSVAFSP---DGEKLLSSSS-D--GTIKLWD 205 (289)
T ss_pred EcCcCCEEEEEcC-CC--cEEEEEccccccceeEecC---cc-----ccceEEECC---CcCEEEEecC-C--CcEEEEE
Confidence 9999886655543 33 4677777655543322110 00 111234543 5556665443 3 4567778
Q ss_pred CCCCceEe-ecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 388 DFGHSLSL-LDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 388 l~~g~~~~-l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
+..++... +......+..+ .++ +.+++.++ ....|++++...++
T Consensus 206 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~---~~~~i~i~~~~~~~ 252 (289)
T cd00200 206 LSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGS---EDGTIRVWDLRTGE 252 (289)
T ss_pred CCCCceecchhhcCCceEEEEEcCC-CcEEEEEc---CCCcEEEEEcCCce
Confidence 77665433 22222234433 344 44544443 23578888876554
No 56
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.34 E-value=0.00086 Score=68.07 Aligned_cols=103 Identities=8% Similarity=0.029 Sum_probs=60.8
Q ss_pred CeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEecc--CCCCCCceeEEEEEECCCCCccCcEEeee
Q 008927 165 QRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDR--RQDALNSTTEIVAIALNGQNIQEPKVLVS 241 (548)
Q Consensus 165 ~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~--~~~~~~~~~~l~~idl~~g~~~~~~~L~~ 241 (548)
++|+++|.+. .+.. .|..+. + ....+||||+.|+. ++.- +...++....|-++|+++.+. ...|..
T Consensus 27 ~~v~ViD~~~--~~v~g~i~~G~-----~-P~~~~spDg~~lyv-a~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~ 95 (352)
T TIGR02658 27 TQVYTIDGEA--GRVLGMTDGGF-----L-PNPVVASDGSFFAH-ASTVYSRIARGKRTDYVEVIDPQTHLP--IADIEL 95 (352)
T ss_pred ceEEEEECCC--CEEEEEEEccC-----C-CceeECCCCCEEEE-EeccccccccCCCCCEEEEEECccCcE--EeEEcc
Confidence 7999999986 4443 333321 2 22249999998654 4330 001112235788999999872 333433
Q ss_pred cCC-------ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc
Q 008927 242 GSD-------FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD 285 (548)
Q Consensus 242 ~~~-------~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~ 285 (548)
+.+ .-....+|||||+|+ +..-.| ...+-++|++. ++
T Consensus 96 p~~p~~~~~~~~~~~~ls~dgk~l~-V~n~~p-----~~~V~VvD~~~-~k 139 (352)
T TIGR02658 96 PEGPRFLVGTYPWMTSLTPDNKTLL-FYQFSP-----SPAVGVVDLEG-KA 139 (352)
T ss_pred CCCchhhccCccceEEECCCCCEEE-EecCCC-----CCEEEEEECCC-Cc
Confidence 222 113568999999875 542122 46799999985 44
No 57
>PRK10115 protease 2; Provisional
Probab=98.33 E-value=0.00055 Score=76.48 Aligned_cols=218 Identities=11% Similarity=0.006 Sum_probs=123.1
Q ss_pred ceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (548)
Q Consensus 191 ~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~ 270 (548)
..+..+.|||||+.|+|.....+ ..+.+|+++|+.+|+.- ...+. +.. ....|++||+.|+|...+ ++. .
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G----~E~~~l~v~d~~tg~~l-~~~i~-~~~--~~~~w~~D~~~~~y~~~~-~~~-~ 196 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLS----RRQYGIRFRNLETGNWY-PELLD-NVE--PSFVWANDSWTFYYVRKH-PVT-L 196 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCC----cEEEEEEEEECCCCCCC-Ccccc-Ccc--eEEEEeeCCCEEEEEEec-CCC-C
Confidence 45667889999999999743322 35789999999988610 12222 222 347899999999988753 221 1
Q ss_pred CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc-CCc-EEEEEeCCCCeeeEEEEe--ccCCeeEeecccccc
Q 008927 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGE-LFFVTDRKNGFWNLHKWI--ESNNEVLAIYSLDAE 346 (548)
Q Consensus 271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp-DG~-L~~~sd~~~g~~~Ly~~d--~~~g~~~~l~~~~~d 346 (548)
...+||..++.+ +. .+.+++..+. + ....-..|.+ |++ +++.+.. .....++.++ +.+++.+.+.+...+
T Consensus 197 ~~~~v~~h~lgt-~~-~~d~lv~~e~-~--~~~~~~~~~s~d~~~l~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 270 (686)
T PRK10115 197 LPYQVWRHTIGT-PA-SQDELVYEEK-D--DTFYVSLHKTTSKHYVVIHLAS-ATTSEVLLLDAELADAEPFVFLPRRKD 270 (686)
T ss_pred CCCEEEEEECCC-Ch-hHCeEEEeeC-C--CCEEEEEEEcCCCCEEEEEEEC-CccccEEEEECcCCCCCceEEEECCCC
Confidence 236899999974 31 1233343322 1 2122123444 888 5533333 2223455555 334444444322111
Q ss_pred cCCCcccccCcceeeeeecCCCCEEEEEEEeC-CeEEEEEEECC-CCceEeecCC--CceeEeeeecCCEEEEEEecCCC
Q 008927 347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-GRSYLGILDDF-GHSLSLLDIP--FTDIDNITLGNDCLFVEGASGVE 422 (548)
Q Consensus 347 ~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~-g~~~L~~~dl~-~g~~~~l~~~--~~~~~~~s~d~~~l~~~~ss~~~ 422 (548)
. .|.... .++.+++..+.+ .+..|+.+++. .++++.|..+ ...+..+...++.+++.... ..
T Consensus 271 ~----------~~~~~~---~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~-~g 336 (686)
T PRK10115 271 H----------EYSLDH---YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQ-RG 336 (686)
T ss_pred C----------EEEEEe---CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEe-CC
Confidence 0 011211 356777777653 56788888887 4566666544 23566665557777776654 44
Q ss_pred CCeEEEEEcCCCceee
Q 008927 423 PSSVAKVTLDDHKLKA 438 (548)
Q Consensus 423 p~~l~~~d~~~~~~~~ 438 (548)
...|+++++.+++.+.
T Consensus 337 ~~~l~~~~~~~~~~~~ 352 (686)
T PRK10115 337 LTSLRQINRKTREVIG 352 (686)
T ss_pred EEEEEEEcCCCCceEE
Confidence 5568888876555443
No 58
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.32 E-value=7.9e-05 Score=69.74 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=88.8
Q ss_pred ecceeeCCCCCEEEEEEe-ccCCC--CCCceeEEEEEECCCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCC
Q 008927 193 YADGIFDPRFNRYVTVRE-DRRQD--ALNSTTEIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNM 268 (548)
Q Consensus 193 ~~~~~~SpDG~~i~~v~~-~~~~~--~~~~~~~l~~idl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~ 268 (548)
-..+.|+|+|+.|++... +.+.. .......||.++..+.. ...+.- ..+.+....|||+|+++|.+.-. +
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---~~~i~l~~~~~I~~~~WsP~g~~favi~g~---~ 81 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---VESIELKKEGPIHDVAWSPNGNEFAVIYGS---M 81 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---cceeeccCCCceEEEEECcCCCEEEEEEcc---C
Confidence 456789999999887654 22111 01124689999888776 555532 22237788999999999877522 2
Q ss_pred CCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccC
Q 008927 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFS 348 (548)
Q Consensus 269 p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~ 348 (548)
| ..+.+.+++ ++ ....+.. .......|||+|+++++...++-...|..+|..+.+. +...+.
T Consensus 82 ~---~~v~lyd~~--~~--~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~--i~~~~~--- 143 (194)
T PF08662_consen 82 P---AKVTLYDVK--GK--KIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK--ISTFEH--- 143 (194)
T ss_pred C---cccEEEcCc--cc--EeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE--eecccc---
Confidence 2 367777775 32 1222322 2345689999999555554322224577788764433 321111
Q ss_pred CCcccccCcceeeeeecCCCCEEEEEEE
Q 008927 349 RPLWVFGINSYEIIQSHGEKNLIACSYR 376 (548)
Q Consensus 349 ~p~w~~~~~~~~~~~~~~d~~~l~~~~~ 376 (548)
.......|+| ||+.|+....
T Consensus 144 -----~~~t~~~WsP---dGr~~~ta~t 163 (194)
T PF08662_consen 144 -----SDATDVEWSP---DGRYLATATT 163 (194)
T ss_pred -----CcEEEEEEcC---CCCEEEEEEe
Confidence 1123356766 8887775543
No 59
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.26 E-value=0.00032 Score=72.39 Aligned_cols=252 Identities=12% Similarity=0.098 Sum_probs=122.2
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
.+++||+.+|..+ +++.|-++|+... ...+.+..+ ..-....+|+||++|+..+.. .+.+.++|.
T Consensus 43 ~~s~Dgr~~yv~~-rdg~vsviD~~~~-~~v~~i~~G-----~~~~~i~~s~DG~~~~v~n~~--------~~~v~v~D~ 107 (369)
T PF02239_consen 43 KFSPDGRYLYVAN-RDGTVSVIDLATG-KVVATIKVG-----GNPRGIAVSPDGKYVYVANYE--------PGTVSVIDA 107 (369)
T ss_dssp E-TT-SSEEEEEE-TTSEEEEEETTSS-SEEEEEE-S-----SEEEEEEE--TTTEEEEEEEE--------TTEEEEEET
T ss_pred EecCCCCEEEEEc-CCCeEEEEECCcc-cEEEEEecC-----CCcceEEEcCCCCEEEEEecC--------CCceeEecc
Confidence 4567777766654 6889999999862 223455443 234467899999987654332 247999999
Q ss_pred CCCCccCcEEeeecC-------CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc
Q 008927 229 NGQNIQEPKVLVSGS-------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (548)
Q Consensus 229 ~~g~~~~~~~L~~~~-------~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~ 301 (548)
++.+. .+.+..+. .....-.-||+....++.. . +..++|++|......+. .+.+.-+ .
T Consensus 108 ~tle~--v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l-k------d~~~I~vVdy~d~~~~~-~~~i~~g-----~ 172 (369)
T PF02239_consen 108 ETLEP--VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL-K------DTGEIWVVDYSDPKNLK-VTTIKVG-----R 172 (369)
T ss_dssp TT--E--EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE-T------TTTEEEEEETTTSSCEE-EEEEE-------T
T ss_pred ccccc--eeecccccccccccCCCceeEEecCCCCEEEEEE-c------cCCeEEEEEeccccccc-eeeeccc-----c
Confidence 88762 23332110 1123334567766544333 2 25689999976432221 1222221 3
Q ss_pred CCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeeccc---c----------------------cc----------
Q 008927 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL---D----------------------AE---------- 346 (548)
Q Consensus 302 ~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~---~----------------------~d---------- 346 (548)
......|+|||+.+++....++ .|-.+|.++++...+.+. . ..
T Consensus 173 ~~~D~~~dpdgry~~va~~~sn--~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~ 250 (369)
T PF02239_consen 173 FPHDGGFDPDGRYFLVAANGSN--KIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP 250 (369)
T ss_dssp TEEEEEE-TTSSEEEEEEGGGT--EEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T
T ss_pred cccccccCcccceeeecccccc--eeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCc
Confidence 4567899999995444322122 455555555443322100 0 00
Q ss_pred ---cCCCccc-------ccCcceeeeeecCCCCEEEEEEE-eCCeEEEEEEECCCCce-EeecCCCc--ee-EeeeecCC
Q 008927 347 ---FSRPLWV-------FGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHSL-SLLDIPFT--DI-DNITLGND 411 (548)
Q Consensus 347 ---~~~p~w~-------~~~~~~~~~~~~~d~~~l~~~~~-~~g~~~L~~~dl~~g~~-~~l~~~~~--~~-~~~s~d~~ 411 (548)
...-.|. .|..- |...+++++++++... ......|.++|.++-++ ..+....+ .+ -.++.||+
T Consensus 251 v~v~d~~~wkvv~~I~~~G~gl--Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~ 328 (369)
T PF02239_consen 251 VSVHDDYAWKVVKTIPTQGGGL--FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGK 328 (369)
T ss_dssp TT-STTTBTSEEEEEE-SSSS----EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSS
T ss_pred cccchhhcCeEEEEEECCCCcc--eeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCC
Confidence 0001111 01111 1112446777765421 22356788999877643 34432111 11 23478999
Q ss_pred EEEEEEecCCCCCeEEEEEcCCCce
Q 008927 412 CLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 412 ~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
.+|+..-..+ .+|.++|.++.+.
T Consensus 329 ~v~vS~~~~~--~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 329 EVWVSVWDGN--GAIVVYDAKTLKE 351 (369)
T ss_dssp EEEEEEE--T--TEEEEEETTTTEE
T ss_pred EEEEEEecCC--CEEEEEECCCcEE
Confidence 9888765433 3899999877653
No 60
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=0.00058 Score=68.26 Aligned_cols=234 Identities=11% Similarity=0.065 Sum_probs=120.4
Q ss_pred CeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (548)
Q Consensus 147 g~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i 226 (548)
|..|.++.+.|+|++-..++|+++++.. ++.+..... ...........+|. | ++++. .++++
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~--g~~~~~~~p----~~~~~~~~~d~~g~-L-v~~~~----------g~~~~ 90 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPET--GKKRVFPSP----GGFSSGALIDAGGR-L-IACEH----------GVRLL 90 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCc--CceEEEECC----CCcccceeecCCCe-E-EEEcc----------ccEEE
Confidence 3467777888999988889999999975 444433221 11122223444443 3 33332 35666
Q ss_pred ECCCCCccCc-EEeeecC-C----ceeeeEECCCCCEEEEEEecC--CCCC--CCCceEEEEEecCCCceeeeEEEcCCC
Q 008927 227 ALNGQNIQEP-KVLVSGS-D----FYAFPRMDPRGERMAWIEWHH--PNMP--WDKAELWVGYISENGDVYKRVCVAGFD 296 (548)
Q Consensus 227 dl~~g~~~~~-~~L~~~~-~----~~~~p~~SPDGk~La~~~~~~--~~~p--~~~~~L~v~~~~~~g~~~~~~~l~~~~ 296 (548)
+++.+. . +.++... + ....-+..|||. +.|..... .+.+ -....||.++.. |. ..+++.+.-
T Consensus 91 ~~~~~~---~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~--g~--~~~l~~~~~ 162 (307)
T COG3386 91 DPDTGG---KITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPD--GG--VVRLLDDDL 162 (307)
T ss_pred eccCCc---eeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCC--CC--EEEeecCcE
Confidence 666555 4 4443221 1 123457889987 43333220 1111 123468877753 33 234444422
Q ss_pred CCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccC--Cee---EeecccccccCCCcccccCcceeeeeecCCCCEE
Q 008927 297 PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN--NEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLI 371 (548)
Q Consensus 297 ~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~--g~~---~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l 371 (548)
.....+.|||||+.+|++|. ....||+++.+. +.. +.......+.+.|.. +... .++.|
T Consensus 163 ----~~~NGla~SpDg~tly~aDT--~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG------~~vD----adG~l 226 (307)
T COG3386 163 ----TIPNGLAFSPDGKTLYVADT--PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG------MAVD----ADGNL 226 (307)
T ss_pred ----EecCceEECCCCCEEEEEeC--CCCeEEEEecCcccCccCCcceEEEccCCCCCCCc------eEEe----CCCCE
Confidence 34467899999995555553 224677776642 221 111111112233332 2221 22344
Q ss_pred EEEEEeCCeEEEEEEECCCCceEeecCCCceeEee---eecCCEEEEEEecCCCC
Q 008927 372 ACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGASGVEP 423 (548)
Q Consensus 372 ~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~~---s~d~~~l~~~~ss~~~p 423 (548)
+..+..+ -..|.++++++..+..+..|....... .++.+.|+++++....+
T Consensus 227 w~~a~~~-g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~~~ 280 (307)
T COG3386 227 WVAAVWG-GGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSGMS 280 (307)
T ss_pred EEecccC-CceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCCCC
Confidence 4333333 357888998855566666664332222 35567888777665443
No 61
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=98.22 E-value=7.8e-05 Score=82.12 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=75.4
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCCceec-CCCCCCCCceecceeeCCCCCEEEE-EEeccCCCCCCceeEEEEEECCCCC
Q 008927 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPI-TPDYGEPLVSYADGIFDPRFNRYVT-VREDRRQDALNSTTEIVAIALNGQN 232 (548)
Q Consensus 155 ~~i~F~~~~~~~Ly~~~~~~~~~~~~~l-T~~~~~~~~~~~~~~~SpDG~~i~~-v~~~~~~~~~~~~~~l~~idl~~g~ 232 (548)
.+|+|.++..++|..+|.+| ..++.| +.. ..-.-.|.|||||+.|+| ++-..-. .+..||+-||.+..
T Consensus 319 tkiAfv~~~~~~L~~~D~dG--~n~~~ve~~~----~~~i~sP~~SPDG~~vAY~ts~e~~~----g~s~vYv~~L~t~~ 388 (912)
T TIGR02171 319 AKLAFRNDVTGNLAYIDYTK--GASRAVEIED----TISVYHPDISPDGKKVAFCTGIEGLP----GKSSVYVRNLNASG 388 (912)
T ss_pred eeEEEEEcCCCeEEEEecCC--CCceEEEecC----CCceecCcCCCCCCEEEEEEeecCCC----CCceEEEEehhccC
Confidence 37999997667999999998 778877 554 234567899999999999 6433200 24679999998754
Q ss_pred ccCcEEeeecCCceeeeEE--CCCCC-EEEEEEecC---CCCCCCCceEEEEEecCCCce
Q 008927 233 IQEPKVLVSGSDFYAFPRM--DPRGE-RMAWIEWHH---PNMPWDKAELWVGYISENGDV 286 (548)
Q Consensus 233 ~~~~~~L~~~~~~~~~p~~--SPDGk-~La~~~~~~---~~~p~~~~~L~v~~~~~~g~~ 286 (548)
.. +..|.-. ..+-|+| ..+|. -|+|++.-. .+..|....-|.+... +|++
T Consensus 389 ~~-~vkl~ve--~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~-~gkf 444 (912)
T TIGR02171 389 SG-LVKLPVE--NAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFA-NGKF 444 (912)
T ss_pred CC-ceEeecc--cccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEec-CCCC
Confidence 11 2222211 2334544 66777 577776211 1224555667888887 4553
No 62
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.17 E-value=0.00093 Score=64.55 Aligned_cols=295 Identities=16% Similarity=0.162 Sum_probs=155.1
Q ss_pred CcCCHHHHhcCCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCe---eeEE
Q 008927 77 SPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGG---AFRI 152 (548)
Q Consensus 77 spit~~~l~~~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~---~~~~ 152 (548)
-|+-+..|-.....+..+.++. |+.++-... ++...||..++.. .++. ..+|..+ +|+-. .|+|
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~----Dr~Ir~w~~~DF~---~~eH----r~~R~nv-e~dhpT~V~Fap 142 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATISG----DRSIRLWDVRDFE---NKEH----RCIRQNV-EYDHPTRVVFAP 142 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCCceeEEEeC----CceEEEEecchhh---hhhh----hHhhccc-cCCCceEEEECC
Confidence 4788888888778899999998 887776652 3555677665441 1111 1222222 33332 6888
Q ss_pred ECCEEEEEeCCCCeEEEEeCCC--CCCCceecCCCC-----CCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927 153 FGDTVIFSNYKDQRLYKHSIDS--KDSSPLPITPDY-----GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (548)
Q Consensus 153 ~~~~i~F~~~~~~~Ly~~~~~~--~~~~~~~lT~~~-----~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~ 225 (548)
|-..+++.-.+...||++.+.. +++-+-..++.. +...+...++...-.++.|+--+++ +.|.+
T Consensus 143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d---------t~i~l 213 (420)
T KOG2096|consen 143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD---------TKICL 213 (420)
T ss_pred CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCC---------CcEEE
Confidence 8888777766666777665532 112222222210 0001112233333344443332222 57899
Q ss_pred EECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeee---EEEcCCCCCcccC
Q 008927 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR---VCVAGFDPTIVES 302 (548)
Q Consensus 226 idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~---~~l~~~~~~~~~~ 302 (548)
+++.+.. ..-+..........++||||+.||-... .| .-.+|..-...+|++++. ..+.+.. ..
T Consensus 214 w~lkGq~---L~~idtnq~~n~~aavSP~GRFia~~gF-Tp-----DVkVwE~~f~kdG~fqev~rvf~LkGH~----sa 280 (420)
T KOG2096|consen 214 WDLKGQL---LQSIDTNQSSNYDAAVSPDGRFIAVSGF-TP-----DVKVWEPIFTKDGTFQEVKRVFSLKGHQ----SA 280 (420)
T ss_pred EecCCce---eeeeccccccccceeeCCCCcEEEEecC-CC-----CceEEEEEeccCcchhhhhhhheeccch----hh
Confidence 9998554 4444322222335689999998884432 12 245666555556765443 3345543 56
Q ss_pred CcCceECcCCcEEEEEeCCCCeeeEEEEeccC--Ce-eEeecccccccCCCcccccCc--ceeeeeecCCCCEEEEEEEe
Q 008927 303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESN--NE-VLAIYSLDAEFSRPLWVFGIN--SYEIIQSHGEKNLIACSYRQ 377 (548)
Q Consensus 303 ~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~--g~-~~~l~~~~~d~~~p~w~~~~~--~~~~~~~~~d~~~l~~~~~~ 377 (548)
+..+.||++.+-+....+ +|.|.||-.|..= ++ .+.|- . ...|....|.. .+...| .++.|..+.
T Consensus 281 V~~~aFsn~S~r~vtvSk-DG~wriwdtdVrY~~~qDpk~Lk-~---g~~pl~aag~~p~RL~lsP---~g~~lA~s~-- 350 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSK-DGKWRIWDTDVRYEAGQDPKILK-E---GSAPLHAAGSEPVRLELSP---SGDSLAVSF-- 350 (420)
T ss_pred eeeeeeCCCcceeEEEec-CCcEEEeeccceEecCCCchHhh-c---CCcchhhcCCCceEEEeCC---CCcEEEeec--
Confidence 788999999984444445 7889998776521 11 11111 1 00111111111 234443 555554332
Q ss_pred CCeEEEEEEECCCCceEe-ecC-CCceeEee--eecCCEEEEEE
Q 008927 378 NGRSYLGILDDFGHSLSL-LDI-PFTDIDNI--TLGNDCLFVEG 417 (548)
Q Consensus 378 ~g~~~L~~~dl~~g~~~~-l~~-~~~~~~~~--s~d~~~l~~~~ 417 (548)
-+.|.++..++|+... +.. ....+..+ +++|+.++-.+
T Consensus 351 --gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 351 --GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred --CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 2346677777776442 221 23346555 56777654433
No 63
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.12 E-value=0.00023 Score=69.53 Aligned_cols=167 Identities=18% Similarity=0.134 Sum_probs=96.8
Q ss_pred eeeEEECCEEEEEe--CCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927 148 GAFRIFGDTVIFSN--YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (548)
Q Consensus 148 ~~~~~~~~~i~F~~--~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~ 225 (548)
.+.+++++.++|.. +...+||....+ +..+.+... ..+..|.|+++|. +.++..... ...++.
T Consensus 29 ~AvS~dg~~~A~v~~~~~~~~L~~~~~~---~~~~~~~~g-----~~l~~PS~d~~g~-~W~v~~~~~------~~~~~~ 93 (253)
T PF10647_consen 29 PAVSPDGSRVAAVSEGDGGRSLYVGPAG---GPVRPVLTG-----GSLTRPSWDPDGW-VWTVDDGSG------GVRVVR 93 (253)
T ss_pred eEECCCCCeEEEEEEcCCCCEEEEEcCC---CcceeeccC-----CccccccccCCCC-EEEEEcCCC------ceEEEE
Confidence 46778899999998 566799999875 345554332 3678899999965 444422211 122232
Q ss_pred EECCCCCccCcEEee-ecCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc-----eeeeEEEcCCCCC
Q 008927 226 IALNGQNIQEPKVLV-SGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-----VYKRVCVAGFDPT 298 (548)
Q Consensus 226 idl~~g~~~~~~~L~-~~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~-----~~~~~~l~~~~~~ 298 (548)
+..++.. ....+. .... .+...++||||.++|++.... +..+|++..+..++. +.....+.... .
T Consensus 94 -~~~~g~~-~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~-----~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~ 165 (253)
T PF10647_consen 94 -DSASGTG-EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDG-----GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-L 165 (253)
T ss_pred -ecCCCcc-eeEEecccccCCceEEEEECCCCcEEEEEEecC-----CCCeEEEEEEEeCCCCCcceeccceEecccc-c
Confidence 3333430 022222 1111 567889999999999998443 257899887754322 11111222111 1
Q ss_pred cccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEee
Q 008927 299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI 340 (548)
Q Consensus 299 ~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l 340 (548)
..+....|.+|+.|+++.....+.... .+...++..+.+
T Consensus 166 --~~v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~~~~~l 204 (253)
T PF10647_consen 166 --SDVTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGGPSTPL 204 (253)
T ss_pred --CcceeeeecCCCEEEEEeCCCCCceeE-EEEccCCccccc
Confidence 356789999999977776552322222 455556655555
No 64
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.09 E-value=0.002 Score=64.44 Aligned_cols=214 Identities=13% Similarity=0.110 Sum_probs=108.5
Q ss_pred cCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccC-CCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEE
Q 008927 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-PKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (548)
Q Consensus 91 ~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt-~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly 168 (548)
-..|.+.| .+.++|+... ...|++.+... +..+.+. |..++ . .-..+.+..++..+. .++
T Consensus 27 gEgP~w~~~~~~L~w~DI~-----~~~i~r~~~~~-g~~~~~~~p~~~~---------~-~~~~d~~g~Lv~~~~--g~~ 88 (307)
T COG3386 27 GEGPVWDPDRGALLWVDIL-----GGRIHRLDPET-GKKRVFPSPGGFS---------S-GALIDAGGRLIACEH--GVR 88 (307)
T ss_pred ccCccCcCCCCEEEEEeCC-----CCeEEEecCCc-CceEEEECCCCcc---------c-ceeecCCCeEEEEcc--ccE
Confidence 34678888 7778888753 23466665542 2222222 22211 0 112344445555533 366
Q ss_pred EEeCCCCCCCc-eecCCCCC-CCCceecceeeCCCCCEEEEEEec---cCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927 169 KHSIDSKDSSP-LPITPDYG-EPLVSYADGIFDPRFNRYVTVRED---RRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (548)
Q Consensus 169 ~~~~~~~~~~~-~~lT~~~~-~~~~~~~~~~~SpDG~~i~~v~~~---~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~ 243 (548)
+++++. +.. +.++.... ....+..|....|||.. +|..-. ...........||++|..++. .+++...-
T Consensus 89 ~~~~~~--~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~-wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~---~~l~~~~~ 162 (307)
T COG3386 89 LLDPDT--GGKITLLAEPEDGLPLNRPNDGVVDPDGRI-WFGDMGYFDLGKSEERPTGSLYRVDPDGGV---VRLLDDDL 162 (307)
T ss_pred EEeccC--CceeEEeccccCCCCcCCCCceeEcCCCCE-EEeCCCccccCccccCCcceEEEEcCCCCE---EEeecCcE
Confidence 666554 344 45544321 12356778899999874 443111 001112234589999986654 44444322
Q ss_pred CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEec-CCCceeeeE--EEcCCCCCcccCCcCceECcCCcEEEEEeC
Q 008927 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRV--CVAGFDPTIVESPTEPKWSSKGELFFVTDR 320 (548)
Q Consensus 244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~-~~g~~~~~~--~l~~~~~~~~~~~~~~~wspDG~L~~~sd~ 320 (548)
.+-...+|||||+.|++.. .. ...||.++++ .++.+...+ ...... . ...-...-..||.|+. +..
T Consensus 163 ~~~NGla~SpDg~tly~aD-T~------~~~i~r~~~d~~~g~~~~~~~~~~~~~~-~--G~PDG~~vDadG~lw~-~a~ 231 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVAD-TP------ANRIHRYDLDPATGPIGGRRGFVDFDEE-P--GLPDGMAVDADGNLWV-AAV 231 (307)
T ss_pred EecCceEECCCCCEEEEEe-CC------CCeEEEEecCcccCccCCcceEEEccCC-C--CCCCceEEeCCCCEEE-ecc
Confidence 2334568999999776543 21 4578888876 233322221 111111 0 1222234445565554 333
Q ss_pred CCCeeeEEEEeccCCeeEee
Q 008927 321 KNGFWNLHKWIESNNEVLAI 340 (548)
Q Consensus 321 ~~g~~~Ly~~d~~~g~~~~l 340 (548)
.+.+.|.++++++.....+
T Consensus 232 -~~g~~v~~~~pdG~l~~~i 250 (307)
T COG3386 232 -WGGGRVVRFNPDGKLLGEI 250 (307)
T ss_pred -cCCceEEEECCCCcEEEEE
Confidence 2335788888874333333
No 65
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.08 E-value=0.003 Score=62.13 Aligned_cols=252 Identities=14% Similarity=0.042 Sum_probs=135.4
Q ss_pred eeEEE-CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927 149 AFRIF-GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (548)
Q Consensus 149 ~~~~~-~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id 227 (548)
...|. +..|+|...-..-++++|..++ ..++.++... ...-|.-..|||||++|+.+ |+..+ ..+..|-+.|
T Consensus 11 a~~p~~~~avafaRRPG~~~~v~D~~~g-~~~~~~~a~~--gRHFyGHg~fs~dG~~LytT-End~~---~g~G~IgVyd 83 (305)
T PF07433_consen 11 AAHPTRPEAVAFARRPGTFALVFDCRTG-QLLQRLWAPP--GRHFYGHGVFSPDGRLLYTT-ENDYE---TGRGVIGVYD 83 (305)
T ss_pred eeCCCCCeEEEEEeCCCcEEEEEEcCCC-ceeeEEcCCC--CCEEecCEEEcCCCCEEEEe-ccccC---CCcEEEEEEE
Confidence 34453 3457777654567899999872 3345565542 23346667899999986554 55422 2467899999
Q ss_pred CCCCCccCcEEeeecCCce---eeeEECCCCCEEEEEEe----cCCCC-------CCCCceEEEEEecCCCceeeeEEEc
Q 008927 228 LNGQNIQEPKVLVSGSDFY---AFPRMDPRGERMAWIEW----HHPNM-------PWDKAELWVGYISENGDVYKRVCVA 293 (548)
Q Consensus 228 l~~g~~~~~~~L~~~~~~~---~~p~~SPDGk~La~~~~----~~~~~-------p~~~~~L~v~~~~~~g~~~~~~~l~ 293 (548)
+..+ .+++.+-+.+- -...|.|||+.|+ ++. .+|+. +-....|-++|.. +|++.+...+.
T Consensus 84 ~~~~----~~ri~E~~s~GIGPHel~l~pDG~tLv-VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~-sG~ll~q~~Lp 157 (305)
T PF07433_consen 84 AARG----YRRIGEFPSHGIGPHELLLMPDGETLV-VANGGIETHPDSGRAKLNLDTMQPSLVYLDAR-SGALLEQVELP 157 (305)
T ss_pred CcCC----cEEEeEecCCCcChhhEEEcCCCCEEE-EEcCCCccCcccCceecChhhcCCceEEEecC-CCceeeeeecC
Confidence 9844 46665543321 1347999999988 441 22221 1123567777776 57754544454
Q ss_pred CCCCCcccCCcCceECcCCcEEEE-EeCCCC---eeeEEEEeccCCeeEeecccccccCCCccccc---CcceeeeeecC
Q 008927 294 GFDPTIVESPTEPKWSSKGELFFV-TDRKNG---FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFG---INSYEIIQSHG 366 (548)
Q Consensus 294 ~~~~~~~~~~~~~~wspDG~L~~~-sd~~~g---~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~---~~~~~~~~~~~ 366 (548)
..... .++..+.|.+||.++|- +.++.. ..-|.+... ++..+.+. ... ..|..- ..+.++..
T Consensus 158 ~~~~~--lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~-~p~----~~~~~l~~Y~gSIa~~~--- 226 (305)
T PF07433_consen 158 PDLHQ--LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLP-APE----EQWRRLNGYIGSIAADR--- 226 (305)
T ss_pred ccccc--cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCcceecc-CCh----HHHHhhCCceEEEEEeC---
Confidence 33212 57888999999995554 444221 112344432 33333332 110 112100 01234442
Q ss_pred CCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEc
Q 008927 367 EKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTL 431 (548)
Q Consensus 367 d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~ 431 (548)
+++.|++++-+.+... ++|.++|++..... ..+..++.+.++. |+.++.. ..++.+..
T Consensus 227 ~g~~ia~tsPrGg~~~--~~d~~tg~~~~~~~-l~D~cGva~~~~~--f~~ssG~--G~~~~~~~ 284 (305)
T PF07433_consen 227 DGRLIAVTSPRGGRVA--VWDAATGRLLGSVP-LPDACGVAPTDDG--FLVSSGQ--GQLIRLSP 284 (305)
T ss_pred CCCEEEEECCCCCEEE--EEECCCCCEeeccc-cCceeeeeecCCc--eEEeCCC--ccEEEccC
Confidence 5667777666666554 45888887654321 2345555433332 4444322 44555543
No 66
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.06 E-value=0.0031 Score=67.43 Aligned_cols=226 Identities=12% Similarity=0.049 Sum_probs=138.3
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (548)
Q Consensus 150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~ 229 (548)
|...|++|+|-..+-+||-+..... +.-.+-... ...+...+.+||||+.|+.-++|. -+-++|..
T Consensus 315 ~N~tGDWiA~g~~klgQLlVweWqs---EsYVlKQQg--H~~~i~~l~YSpDgq~iaTG~eDg---------KVKvWn~~ 380 (893)
T KOG0291|consen 315 FNSTGDWIAFGCSKLGQLLVWEWQS---ESYVLKQQG--HSDRITSLAYSPDGQLIATGAEDG---------KVKVWNTQ 380 (893)
T ss_pred ecccCCEEEEcCCccceEEEEEeec---cceeeeccc--cccceeeEEECCCCcEEEeccCCC---------cEEEEecc
Confidence 4445889999887777887777753 222221110 123567788999999988866653 36667877
Q ss_pred CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (548)
Q Consensus 230 ~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws 309 (548)
+|-. ....++....+....|+.+|+.|+-.+.+ ..+...|+.. .. +.+.++... . .+....+-.
T Consensus 381 SgfC--~vTFteHts~Vt~v~f~~~g~~llssSLD--------GtVRAwDlkR-Yr--NfRTft~P~-p--~QfscvavD 444 (893)
T KOG0291|consen 381 SGFC--FVTFTEHTSGVTAVQFTARGNVLLSSSLD--------GTVRAWDLKR-YR--NFRTFTSPE-P--IQFSCVAVD 444 (893)
T ss_pred CceE--EEEeccCCCceEEEEEEecCCEEEEeecC--------CeEEeeeecc-cc--eeeeecCCC-c--eeeeEEEEc
Confidence 7741 22334444457778899999977644432 3466667763 32 345444432 1 344555666
Q ss_pred cCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECC
Q 008927 310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 389 (548)
Q Consensus 310 pDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~ 389 (548)
|.|.|++..+. ...+||+++..+|+...+... .+.|. +..++.| ++. ++++...+..-++|-+=-.
T Consensus 445 ~sGelV~AG~~--d~F~IfvWS~qTGqllDiLsG---HEgPV-----s~l~f~~---~~~-~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 445 PSGELVCAGAQ--DSFEIFVWSVQTGQLLDILSG---HEGPV-----SGLSFSP---DGS-LLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred CCCCEEEeecc--ceEEEEEEEeecCeeeehhcC---CCCcc-----eeeEEcc---ccC-eEEeccccceEEEEEeecc
Confidence 77988887665 558999999999997766532 22332 1234543 455 5556666777777755445
Q ss_pred CCceEeecCCCceeE-eeeecCCEEEEEEec
Q 008927 390 GHSLSLLDIPFTDID-NITLGNDCLFVEGAS 419 (548)
Q Consensus 390 ~g~~~~l~~~~~~~~-~~s~d~~~l~~~~ss 419 (548)
.+.++.|...-.... .++|||+.+++....
T Consensus 511 ~~~vEtl~i~sdvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 511 SGTVETLEIRSDVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred CceeeeEeeccceeEEEEcCCCCeEEEEEec
Confidence 567777764322221 347899988776654
No 67
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=98.05 E-value=8.9e-06 Score=85.36 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=52.7
Q ss_pred CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
..|.|+++.. ||.+++||++.|.. +++.|+|| +|||..+.....|....++|+++||+|+.+|+||.
T Consensus 167 ~~e~v~i~~~-~g~~l~g~l~~P~~-------~~~~P~Vl-i~gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~ 233 (414)
T PRK05077 167 ELKELEFPIP-GGGPITGFLHLPKG-------DGPFPTVL-VCGGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSV 233 (414)
T ss_pred ceEEEEEEcC-CCcEEEEEEEECCC-------CCCccEEE-EeCCcccchhhhHHHHHHHHHhCCCEEEEECCCCC
Confidence 3678999997 88899999999952 35679877 56776654444456677899999999999999973
No 68
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.98 E-value=0.0012 Score=61.89 Aligned_cols=190 Identities=11% Similarity=0.054 Sum_probs=112.5
Q ss_pred CCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEE-CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCC
Q 008927 110 TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF-GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE 188 (548)
Q Consensus 110 ~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~-~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~ 188 (548)
.|+|...||.+..- ..+++ |...++|. ...+. ...=+|+.+.+++|++-|+..+ .-..+|.++.
T Consensus 102 seDgt~kIWdlR~~---~~qR~----~~~~spVn-----~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~~liPe~-- 166 (311)
T KOG0315|consen 102 SEDGTVKIWDLRSL---SCQRN----YQHNSPVN-----TVVLHPNQTELISGDQSGNIRVWDLGEN-SCTHELIPED-- 166 (311)
T ss_pred CCCceEEEEeccCc---ccchh----ccCCCCcc-----eEEecCCcceEEeecCCCcEEEEEccCC-ccccccCCCC--
Confidence 45788888877543 12222 22222321 22333 2244567778889999898652 3346777753
Q ss_pred CCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc-cCcEEe---eecCCceeeeEECCCCCEEEEEEec
Q 008927 189 PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QEPKVL---VSGSDFYAFPRMDPRGERMAWIEWH 264 (548)
Q Consensus 189 ~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~-~~~~~L---~~~~~~~~~p~~SPDGk~La~~~~~ 264 (548)
...+..+...|||+.++.+. + +..+|++++-++.. .+...+ ...........+|||+|+||-.+.
T Consensus 167 -~~~i~sl~v~~dgsml~a~n-n--------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss- 235 (311)
T KOG0315|consen 167 -DTSIQSLTVMPDGSMLAAAN-N--------KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS- 235 (311)
T ss_pred -CcceeeEEEcCCCcEEEEec-C--------CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC-
Confidence 35677888999999988863 2 24678888876532 012222 222344567789999999995442
Q ss_pred CCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec
Q 008927 265 HPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (548)
Q Consensus 265 ~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~ 341 (548)
...+++.+.+.- +.-.+.+.+.. ..+....||.||+.++.... ++...|| +++.++..+..
T Consensus 236 -------dktv~iwn~~~~--~kle~~l~gh~----rWvWdc~FS~dg~YlvTass-d~~~rlW--~~~~~k~v~qy 296 (311)
T KOG0315|consen 236 -------DKTVKIWNTDDF--FKLELVLTGHQ----RWVWDCAFSADGEYLVTASS-DHTARLW--DLSAGKEVRQY 296 (311)
T ss_pred -------CceEEEEecCCc--eeeEEEeecCC----ceEEeeeeccCccEEEecCC-CCceeec--ccccCceeeec
Confidence 235666666531 22234566654 56788899999985555443 4555554 45566654443
No 69
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.94 E-value=0.0026 Score=62.11 Aligned_cols=200 Identities=15% Similarity=0.109 Sum_probs=101.5
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (548)
Q Consensus 164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~ 243 (548)
|++|+++.- +..+++.............+.+|+||+.++++.+.. ....|+.....+.. +.+..+.
T Consensus 1 dG~l~~~~~----~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~------~~~~L~~~~~~~~~----~~~~~g~ 66 (253)
T PF10647_consen 1 DGQLVRVSG----GGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGD------GGRSLYVGPAGGPV----RPVLTGG 66 (253)
T ss_pred CCcEEEecC----CceeECCCCcCcCCccccceEECCCCCeEEEEEEcC------CCCEEEEEcCCCcc----eeeccCC
Confidence 356776442 345555443211123567889999999999997222 24689998876553 4443443
Q ss_pred CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCC
Q 008927 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (548)
Q Consensus 244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~ 322 (548)
.+..|.|++||...+ +. +.. ....++. +.. .+... ...+.-.... ..+..+.+||||. ++++... .
T Consensus 67 -~l~~PS~d~~g~~W~-v~-~~~----~~~~~~~-~~~-~g~~~-~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~-~ 133 (253)
T PF10647_consen 67 -SLTRPSWDPDGWVWT-VD-DGS----GGVRVVR-DSA-SGTGE-PVEVDWPGLR--GRITALRVSPDGTRVAVVVED-G 133 (253)
T ss_pred -ccccccccCCCCEEE-EE-cCC----CceEEEE-ecC-CCcce-eEEecccccC--CceEEEEECCCCcEEEEEEec-C
Confidence 467899999976333 22 221 1122222 222 23321 2223222100 2578899999999 8888765 3
Q ss_pred CeeeEEEEecc---CCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEee
Q 008927 323 GFWNLHKWIES---NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 396 (548)
Q Consensus 323 g~~~Ly~~d~~---~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l 396 (548)
+..+||...+. +|....+.... ....+. ........|. ++..|++.....+......+...++..+.+
T Consensus 134 ~~~~v~va~V~r~~~g~~~~l~~~~-~~~~~~-~~~v~~v~W~----~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l 204 (253)
T PF10647_consen 134 GGGRVYVAGVVRDGDGVPRRLTGPR-RVAPPL-LSDVTDVAWS----DDSTLVVLGRSAGGPVVRLVSVDGGPSTPL 204 (253)
T ss_pred CCCeEEEEEEEeCCCCCcceeccce-Eecccc-cCcceeeeec----CCCEEEEEeCCCCCceeEEEEccCCccccc
Confidence 44666665432 23122232100 000000 0011234565 556666655543332222456666666665
No 70
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.85 E-value=0.029 Score=53.56 Aligned_cols=230 Identities=11% Similarity=0.087 Sum_probs=119.6
Q ss_pred EEEEEeCCCCeEEEEeCCCCC---CCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCC
Q 008927 156 TVIFSNYKDQRLYKHSIDSKD---SSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (548)
Q Consensus 156 ~i~F~~~~~~~Ly~~~~~~~~---~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g 231 (548)
.++++..+|..+..-++..++ |.+ ++++-. .-.+.+...|+||+..+-.+-| ..|..+|+++|
T Consensus 29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH----sH~v~dv~~s~dg~~alS~swD---------~~lrlWDl~~g 95 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH----SHFVSDVVLSSDGNFALSASWD---------GTLRLWDLATG 95 (315)
T ss_pred ceEEEcccceEEEEEEeccCccccCceeeeeecc----ceEecceEEccCCceEEecccc---------ceEEEEEecCC
Confidence 456666566544333332211 333 455543 3467889999999974433222 36888899999
Q ss_pred CccCcEEeeecCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc
Q 008927 232 NIQEPKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (548)
Q Consensus 232 ~~~~~~~L~~~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp 310 (548)
+ .++...+.. -+...++|||.++|+=-+. ...|-+.+.-+.. ...+...... ..+....|+|
T Consensus 96 ~---~t~~f~GH~~dVlsva~s~dn~qivSGSr--------DkTiklwnt~g~c----k~t~~~~~~~--~WVscvrfsP 158 (315)
T KOG0279|consen 96 E---STRRFVGHTKDVLSVAFSTDNRQIVSGSR--------DKTIKLWNTLGVC----KYTIHEDSHR--EWVSCVRFSP 158 (315)
T ss_pred c---EEEEEEecCCceEEEEecCCCceeecCCC--------cceeeeeeecccE----EEEEecCCCc--CcEEEEEEcC
Confidence 7 555554433 3667789999999872221 1235555554221 1222221101 5678899999
Q ss_pred CCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECC
Q 008927 311 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 389 (548)
Q Consensus 311 DG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~ 389 (548)
+.. .++++-..++ .+-.+|+.+-+.+.-... .... .+...++| || .+.....++| ++++.|+.
T Consensus 159 ~~~~p~Ivs~s~Dk--tvKvWnl~~~~l~~~~~g-----h~~~---v~t~~vSp---DG-slcasGgkdg--~~~LwdL~ 222 (315)
T KOG0279|consen 159 NESNPIIVSASWDK--TVKVWNLRNCQLRTTFIG-----HSGY---VNTVTVSP---DG-SLCASGGKDG--EAMLWDLN 222 (315)
T ss_pred CCCCcEEEEccCCc--eEEEEccCCcchhhcccc-----cccc---EEEEEECC---CC-CEEecCCCCc--eEEEEEcc
Confidence 974 5555432122 355566655554433221 1111 12234554 54 4443433444 56667776
Q ss_pred CCce-EeecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 390 GHSL-SLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 390 ~g~~-~~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
.++- ..+. .+..+..+.-..+++++..... ..|-+.|++++.
T Consensus 223 ~~k~lysl~-a~~~v~sl~fspnrywL~~at~---~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 223 EGKNLYSLE-AFDIVNSLCFSPNRYWLCAATA---TSIKIWDLESKA 265 (315)
T ss_pred CCceeEecc-CCCeEeeEEecCCceeEeeccC---CceEEEeccchh
Confidence 6653 2222 2334555533333333333322 347777887665
No 71
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.85 E-value=0.014 Score=57.48 Aligned_cols=215 Identities=16% Similarity=0.114 Sum_probs=115.0
Q ss_pred ceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC--CceeeeEECCCCCEEEEEEecCCCC
Q 008927 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS--DFYAFPRMDPRGERMAWIEWHHPNM 268 (548)
Q Consensus 191 ~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~--~~~~~p~~SPDGk~La~~~~~~~~~ 268 (548)
.|-.++..+|+...++++..+. -..++++|..+|+. ...+...+ -||..-.|||||++|+ +..+.-
T Consensus 5 ~RgH~~a~~p~~~~avafaRRP-------G~~~~v~D~~~g~~--~~~~~a~~gRHFyGHg~fs~dG~~Ly-tTEnd~-- 72 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRP-------GTFALVFDCRTGQL--LQRLWAPPGRHFYGHGVFSPDGRLLY-TTENDY-- 72 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCC-------CcEEEEEEcCCCce--eeEEcCCCCCEEecCEEEcCCCCEEE-Eecccc--
Confidence 3556678899655555554442 25799999999972 33454433 3678889999999875 442321
Q ss_pred CCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEE-----eCCCCe---------eeEEEEecc
Q 008927 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT-----DRKNGF---------WNLHKWIES 333 (548)
Q Consensus 269 p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~s-----d~~~g~---------~~Ly~~d~~ 333 (548)
.-....|-|.|+.. + +...-...... ....+..|.|||+ |++.. ..+.|+ .+|..+|..
T Consensus 73 ~~g~G~IgVyd~~~-~-~~ri~E~~s~G----IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 73 ETGRGVIGVYDAAR-G-YRRIGEFPSHG----IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred CCCcEEEEEEECcC-C-cEEEeEecCCC----cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 11356788888872 2 21222233321 4467889999998 65541 111232 346777777
Q ss_pred CCeeE-eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC-----eEEEEEEECCCCceEeecCCC-------
Q 008927 334 NNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-----RSYLGILDDFGHSLSLLDIPF------- 400 (548)
Q Consensus 334 ~g~~~-~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g-----~~~L~~~dl~~g~~~~l~~~~------- 400 (548)
+|++. +..-.+ + .-......+++. .++.+++.....| ..-|.+.+ .++..+.+..+.
T Consensus 147 sG~ll~q~~Lp~-~----~~~lSiRHLa~~----~~G~V~~a~Q~qg~~~~~~PLva~~~-~g~~~~~~~~p~~~~~~l~ 216 (305)
T PF07433_consen 147 SGALLEQVELPP-D----LHQLSIRHLAVD----GDGTVAFAMQYQGDPGDAPPLVALHR-RGGALRLLPAPEEQWRRLN 216 (305)
T ss_pred CCceeeeeecCc-c----ccccceeeEEec----CCCcEEEEEecCCCCCccCCeEEEEc-CCCcceeccCChHHHHhhC
Confidence 88753 221100 0 011233345554 3445555544322 22233333 233355554431
Q ss_pred ceeEeee--ecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 401 TDIDNIT--LGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 401 ~~~~~~s--~d~~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
.-+.++. .+++.+++ ++ .+-..+.++|..++++
T Consensus 217 ~Y~gSIa~~~~g~~ia~--ts-PrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAV--TS-PRGGRVAVWDAATGRL 251 (305)
T ss_pred CceEEEEEeCCCCEEEE--EC-CCCCEEEEEECCCCCE
Confidence 1244443 34444433 23 2345677788888874
No 72
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.85 E-value=2.9e-05 Score=73.58 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=52.3
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCC
Q 008927 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGL 538 (548)
Q Consensus 463 ~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGy 538 (548)
.++|++. +|..|+|||..|+. +.++.|+||..||==. +.++-+.+-.|+..||+||.++.||=.++
T Consensus 58 dvTf~g~-~g~rI~gwlvlP~~------~~~~~P~vV~fhGY~g---~~g~~~~~l~wa~~Gyavf~MdvRGQg~~ 123 (321)
T COG3458 58 DVTFTGY-GGARIKGWLVLPRH------EKGKLPAVVQFHGYGG---RGGEWHDMLHWAVAGYAVFVMDVRGQGSS 123 (321)
T ss_pred EEEEecc-CCceEEEEEEeecc------cCCccceEEEEeeccC---CCCCccccccccccceeEEEEecccCCCc
Confidence 4889997 99999999999974 2368899999998311 11233456689999999999999997776
No 73
>PTZ00421 coronin; Provisional
Probab=97.81 E-value=0.005 Score=66.01 Aligned_cols=212 Identities=10% Similarity=0.040 Sum_probs=117.2
Q ss_pred CCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCc-------ccCCCCCCccccceeeCCeeeEEECCEEEE
Q 008927 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPS-------DITPKEYAVRTTAQEYGGGAFRIFGDTVIF 159 (548)
Q Consensus 88 ~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~-------~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F 159 (548)
...+..+.++| ++.++.... ++|...||.+... +... .|.... ..+ ..-.|.|+++.++.
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS---~DgtIkIWdi~~~--~~~~~~~~~l~~L~gH~----~~V---~~l~f~P~~~~iLa 142 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTAS---EDGTIMGWGIPEE--GLTQNISDPIVHLQGHT----KKV---GIVSFHPSAMNVLA 142 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEe---CCCEEEEEecCCC--ccccccCcceEEecCCC----CcE---EEEEeCcCCCCEEE
Confidence 35577888888 665544432 2577777876443 1111 111111 111 12357777666666
Q ss_pred EeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE
Q 008927 160 SNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV 238 (548)
Q Consensus 160 ~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~ 238 (548)
+...++.|.+.|+.. ++. ..+... ...+..+.|+|||+.|+..+.+ ..|.++|+.+++. ...
T Consensus 143 Sgs~DgtVrIWDl~t--g~~~~~l~~h----~~~V~sla~spdG~lLatgs~D---------g~IrIwD~rsg~~--v~t 205 (493)
T PTZ00421 143 SAGADMVVNVWDVER--GKAVEVIKCH----SDQITSLEWNLDGSLLCTTSKD---------KKLNIIDPRDGTI--VSS 205 (493)
T ss_pred EEeCCCEEEEEECCC--CeEEEEEcCC----CCceEEEEEECCCCEEEEecCC---------CEEEEEECCCCcE--EEE
Confidence 666677787778875 443 333322 1235678899999987765433 3688889988761 222
Q ss_pred eeecCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEE
Q 008927 239 LVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV 317 (548)
Q Consensus 239 L~~~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~ 317 (548)
+....+ ......|++++..|+-+..+.. ....|.+.|+..... ......... . .....+.|++|++++++
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s----~Dr~VklWDlr~~~~--p~~~~~~d~-~--~~~~~~~~d~d~~~L~l 276 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCSKS----QQRQIMLWDTRKMAS--PYSTVDLDQ-S--SALFIPFFDEDTNLLYI 276 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecCCC----CCCeEEEEeCCCCCC--ceeEeccCC-C--CceEEEEEcCCCCEEEE
Confidence 322221 1234579999887764443211 235688888864222 111111111 1 23455789999995555
Q ss_pred EeCCCCeeeEEEEeccCCeeEe
Q 008927 318 TDRKNGFWNLHKWIESNNEVLA 339 (548)
Q Consensus 318 sd~~~g~~~Ly~~d~~~g~~~~ 339 (548)
...+++ .|..+++.+++...
T Consensus 277 ggkgDg--~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 277 GSKGEG--NIRCFELMNERLTF 296 (493)
T ss_pred EEeCCC--eEEEEEeeCCceEE
Confidence 433233 56666776666443
No 74
>PTZ00421 coronin; Provisional
Probab=97.80 E-value=0.033 Score=59.76 Aligned_cols=205 Identities=13% Similarity=0.147 Sum_probs=105.1
Q ss_pred eecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEEECCCCCc-----cCcEEeeecCCceeeeEECCCCCEEEEEEecC
Q 008927 192 SYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-----QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHH 265 (548)
Q Consensus 192 ~~~~~~~Sp-DG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~-----~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~ 265 (548)
.+.++.|+| |++.|+..+.+ ..|.++|+.++.. .....|......+....|+|++..++.....
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~D---------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~- 146 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASED---------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA- 146 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCC---------CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC-
Confidence 466788999 88876665443 2566677765420 0012333333446677899987544334311
Q ss_pred CCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeE-eecccc
Q 008927 266 PNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLD 344 (548)
Q Consensus 266 ~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~-~l~~~~ 344 (548)
...|.+.|++. ++ ....+.+.. ..+....|+|||++++.... ++ .|..+|+.+++.. .+....
T Consensus 147 ------DgtVrIWDl~t-g~--~~~~l~~h~----~~V~sla~spdG~lLatgs~-Dg--~IrIwD~rsg~~v~tl~~H~ 210 (493)
T PTZ00421 147 ------DMVVNVWDVER-GK--AVEVIKCHS----DQITSLEWNLDGSLLCTTSK-DK--KLNIIDPRDGTIVSSVEAHA 210 (493)
T ss_pred ------CCEEEEEECCC-Ce--EEEEEcCCC----CceEEEEEECCCCEEEEecC-CC--EEEEEECCCCcEEEEEecCC
Confidence 24688889874 43 233444433 45788999999996555544 44 4666777666542 222110
Q ss_pred cccCCCcccccCcceeeeeecCCCCEEEEEEE-eCCeEEEEEEECCCCc--eEeecCCC-c-eeEe-eeecCCEEEEEEe
Q 008927 345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHS--LSLLDIPF-T-DIDN-ITLGNDCLFVEGA 418 (548)
Q Consensus 345 ~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~-~~g~~~L~~~dl~~g~--~~~l~~~~-~-~~~~-~s~d~~~l~~~~s 418 (548)
... .....|.+ +++.|+.... ......|.++|+.... ...+.... . .... ++++++.++..+.
T Consensus 211 ----~~~----~~~~~w~~---~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 211 ----SAK----SQRCLWAK---RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred ----CCc----ceEEEEcC---CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence 000 00122332 4455543322 1223457777875432 11111111 1 1112 2566665554432
Q ss_pred cCCCCCeEEEEEcCCCce
Q 008927 419 SGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 419 s~~~p~~l~~~d~~~~~~ 436 (548)
. -..|..+|+.+++.
T Consensus 280 g---Dg~Iriwdl~~~~~ 294 (493)
T PTZ00421 280 G---EGNIRCFELMNERL 294 (493)
T ss_pred C---CCeEEEEEeeCCce
Confidence 2 24677777766653
No 75
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=97.78 E-value=2.9e-05 Score=78.28 Aligned_cols=71 Identities=24% Similarity=0.454 Sum_probs=47.6
Q ss_pred CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCCh
Q 008927 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSS 540 (548)
Q Consensus 461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~ 540 (548)
...|+|++. +|..|+|||+.|++. .++.|+||..||....... + .....|+.+||+||.+|.||=.|.-+
T Consensus 56 vy~v~f~s~-~g~~V~g~l~~P~~~------~~~~Pavv~~hGyg~~~~~--~-~~~~~~a~~G~~vl~~d~rGqg~~~~ 125 (320)
T PF05448_consen 56 VYDVSFESF-DGSRVYGWLYRPKNA------KGKLPAVVQFHGYGGRSGD--P-FDLLPWAAAGYAVLAMDVRGQGGRSP 125 (320)
T ss_dssp EEEEEEEEG-GGEEEEEEEEEES-S------SSSEEEEEEE--TT--GGG--H-HHHHHHHHTT-EEEEE--TTTSSSS-
T ss_pred EEEEEEEcc-CCCEEEEEEEecCCC------CCCcCEEEEecCCCCCCCC--c-ccccccccCCeEEEEecCCCCCCCCC
Confidence 457899997 999999999999742 4689999999997544211 1 22346999999999999999665444
Q ss_pred h
Q 008927 541 V 541 (548)
Q Consensus 541 ~ 541 (548)
+
T Consensus 126 d 126 (320)
T PF05448_consen 126 D 126 (320)
T ss_dssp B
T ss_pred C
Confidence 4
No 76
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.78 E-value=0.0013 Score=65.58 Aligned_cols=154 Identities=10% Similarity=0.109 Sum_probs=86.2
Q ss_pred eeEEECCEEEEEeCCCC-eEEEEeCCCCCCCce---ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 008927 149 AFRIFGDTVIFSNYKDQ-RLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~-~Ly~~~~~~~~~~~~---~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~ 224 (548)
.|+.+|++|+=.+.... -||.+..++ ..+ .|... ...+.-..||||.+.|+.- ... ..+.
T Consensus 231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~---~~kl~~tlvgh----~~~V~yi~wSPDdryLlaC-g~~--------e~~~ 294 (519)
T KOG0293|consen 231 QFSHNGKYLASASKDSTAIIWIVVYDV---HFKLKKTLVGH----SQPVSYIMWSPDDRYLLAC-GFD--------EVLS 294 (519)
T ss_pred EEcCCCeeEeeccCCceEEEEEEecCc---ceeeeeeeecc----cCceEEEEECCCCCeEEec-Cch--------Hhee
Confidence 45556666665543333 456666553 321 22211 1224456799999887663 221 2488
Q ss_pred EEECCCCCccCcEEeeecC-Cc-eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccC
Q 008927 225 AIALNGQNIQEPKVLVSGS-DF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (548)
Q Consensus 225 ~idl~~g~~~~~~~L~~~~-~~-~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~ 302 (548)
+.|+.+|+ .+.+.... ++ ....+|-|||.+++ . ..+ ...++..+++ |.+ ...-.+-. . ..
T Consensus 295 lwDv~tgd---~~~~y~~~~~~S~~sc~W~pDg~~~V--~-Gs~-----dr~i~~wdlD--gn~--~~~W~gvr-~--~~ 356 (519)
T KOG0293|consen 295 LWDVDTGD---LRHLYPSGLGFSVSSCAWCPDGFRFV--T-GSP-----DRTIIMWDLD--GNI--LGNWEGVR-D--PK 356 (519)
T ss_pred eccCCcch---hhhhcccCcCCCcceeEEccCCceeE--e-cCC-----CCcEEEecCC--cch--hhcccccc-c--ce
Confidence 89999998 66655433 33 56779999999865 2 122 2457777776 321 11111100 0 23
Q ss_pred CcCceECcCCc-EEEEE-eCCCCeeeEEEEeccCCeeEeec
Q 008927 303 PTEPKWSSKGE-LFFVT-DRKNGFWNLHKWIESNNEVLAIY 341 (548)
Q Consensus 303 ~~~~~wspDG~-L~~~s-d~~~g~~~Ly~~d~~~g~~~~l~ 341 (548)
+...+-++||+ ++.+. |. .+..++.++...+.+.
T Consensus 357 v~dlait~Dgk~vl~v~~d~-----~i~l~~~e~~~dr~li 392 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTVDK-----KIRLYNREARVDRGLI 392 (519)
T ss_pred eEEEEEcCCCcEEEEEeccc-----ceeeechhhhhhhccc
Confidence 56778899999 65553 33 5666676554444343
No 77
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.68 E-value=0.035 Score=65.17 Aligned_cols=252 Identities=12% Similarity=0.114 Sum_probs=129.6
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCC-CCCC--------CC-ceecceeeCCCCCEEEEEEeccCCCCCC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITP-DYGE--------PL-VSYADGIFDPRFNRYVTVREDRRQDALN 218 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~-~~~~--------~~-~~~~~~~~SpDG~~i~~v~~~~~~~~~~ 218 (548)
++.++++.|++.+...++|+++++++ .....+-. ...+ .. .+-..+.++++++.| ||++..
T Consensus 574 avd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~L-YVaDt~------ 644 (1057)
T PLN02919 574 AIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL-YVADTE------ 644 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEE-EEEeCC------
Confidence 44445678888887788999999876 32222211 1000 00 112346788888765 444332
Q ss_pred ceeEEEEEECCCCCccCcEEeeecC--------------Cce---eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEec
Q 008927 219 STTEIVAIALNGQNIQEPKVLVSGS--------------DFY---AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS 281 (548)
Q Consensus 219 ~~~~l~~idl~~g~~~~~~~L~~~~--------------~~~---~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~ 281 (548)
.+.|.++|+.++. .+.+.... ... ....++|++..|. ++.. ....|++++..
T Consensus 645 -n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~Ly-Vad~------~~~~I~v~d~~ 713 (1057)
T PLN02919 645 -NHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVY-IAMA------GQHQIWEYNIS 713 (1057)
T ss_pred -CceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEE-EEEC------CCCeEEEEECC
Confidence 2468889998876 55553210 001 2347888766554 5422 24578888876
Q ss_pred CCCceeeeEEEcCC---------CC--CcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccc------
Q 008927 282 ENGDVYKRVCVAGF---------DP--TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD------ 344 (548)
Q Consensus 282 ~~g~~~~~~~l~~~---------~~--~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~------ 344 (548)
. +.+ ..+.+. .. ..........++|||+.+|++|. +...|.++|++++..+.+....
T Consensus 714 ~-g~v---~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~~ 787 (1057)
T PLN02919 714 D-GVT---RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSDN 787 (1057)
T ss_pred C-CeE---EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCcc
Confidence 3 431 122111 00 00012334679999995556665 3357888998777654332110
Q ss_pred -cccC---CCc---ccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecC-C-------------Ccee
Q 008927 345 -AEFS---RPL---WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI-P-------------FTDI 403 (548)
Q Consensus 345 -~d~~---~p~---w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~-~-------------~~~~ 403 (548)
..++ .+. .........+.+ ++ .||++- .+...|.++|++++.+..+.. + +..-
T Consensus 788 l~~fG~~dG~g~~~~l~~P~Gvavd~---dG-~LYVAD--s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 788 LFKFGDHDGVGSEVLLQHPLGVLCAK---DG-QIYVAD--SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred cccccCCCCchhhhhccCCceeeEeC---CC-cEEEEE--CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence 0000 000 000111233432 44 455433 345568889988887765532 1 1111
Q ss_pred Eee--eecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 404 DNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 404 ~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
.++ ++++ ++| ++.+ ....|.++|+.+++.
T Consensus 862 ~GIavd~dG-~ly-VaDt--~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 862 AGLALGENG-RLF-VADT--NNSLIRYLDLNKGEA 892 (1057)
T ss_pred eEEEEeCCC-CEE-EEEC--CCCEEEEEECCCCcc
Confidence 223 3444 454 4443 235788889877764
No 78
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.67 E-value=0.0077 Score=62.20 Aligned_cols=193 Identities=11% Similarity=0.102 Sum_probs=97.6
Q ss_pred EEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCC
Q 008927 205 YVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG 284 (548)
Q Consensus 205 i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g 284 (548)
|++|.+.. .+.|.+||.++.+. ...+..+........+||||++++ +.. . ...|.++|+.. +
T Consensus 7 l~~V~~~~-------~~~v~viD~~t~~~--~~~i~~~~~~h~~~~~s~Dgr~~y-v~~-r------dg~vsviD~~~-~ 68 (369)
T PF02239_consen 7 LFYVVERG-------SGSVAVIDGATNKV--VARIPTGGAPHAGLKFSPDGRYLY-VAN-R------DGTVSVIDLAT-G 68 (369)
T ss_dssp EEEEEEGG-------GTEEEEEETTT-SE--EEEEE-STTEEEEEE-TT-SSEEE-EEE-T------TSEEEEEETTS-S
T ss_pred EEEEEecC-------CCEEEEEECCCCeE--EEEEcCCCCceeEEEecCCCCEEE-EEc-C------CCeEEEEECCc-c
Confidence 56665543 25899999998862 344544444456678999999865 552 2 24799999985 4
Q ss_pred ceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccc---cccCCCcccccCcceee
Q 008927 285 DVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD---AEFSRPLWVFGINSYEI 361 (548)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~---~d~~~p~w~~~~~~~~~ 361 (548)
++ ...+.-+ .......+|+||+++++++...+ .+..+|.++.+.....+.. .+...+. ......
T Consensus 69 ~~--v~~i~~G-----~~~~~i~~s~DG~~~~v~n~~~~--~v~v~D~~tle~v~~I~~~~~~~~~~~~R----v~aIv~ 135 (369)
T PF02239_consen 69 KV--VATIKVG-----GNPRGIAVSPDGKYVYVANYEPG--TVSVIDAETLEPVKTIPTGGMPVDGPESR----VAAIVA 135 (369)
T ss_dssp SE--EEEEE-S-----SEEEEEEE--TTTEEEEEEEETT--EEEEEETTT--EEEEEE--EE-TTTS-------EEEEEE
T ss_pred cE--EEEEecC-----CCcceEEEcCCCCEEEEEecCCC--ceeEeccccccceeecccccccccccCCC----ceeEEe
Confidence 42 2223222 23456789999996666654233 6777888777654332211 0000000 001112
Q ss_pred eeecCCCCEEEEEEEeCCeEEEEEEECCCCce---EeecCCCceeE-eeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 362 IQSHGEKNLIACSYRQNGRSYLGILDDFGHSL---SLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 362 ~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~---~~l~~~~~~~~-~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
++ ....+++.. ....+++.+|..+.+. +.+..+..-.. .+++++++++..... ...+.++|.++++.
T Consensus 136 s~---~~~~fVv~l--kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~---sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 136 SP---GRPEFVVNL--KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG---SNKIAVIDTKTGKL 206 (369)
T ss_dssp -S---SSSEEEEEE--TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG---GTEEEEEETTTTEE
T ss_pred cC---CCCEEEEEE--ccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc---cceeEEEeeccceE
Confidence 21 334344333 3345788888766532 22222211112 336777776554433 34888889877764
No 79
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=97.66 E-value=4.6e-05 Score=72.44 Aligned_cols=57 Identities=14% Similarity=0.185 Sum_probs=40.5
Q ss_pred EEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccC-hHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927 477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGLS 539 (548)
Q Consensus 477 g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~-~~~Q~~asrGyaVl~~NyRGStGyG 539 (548)
+|||.|.+ + .+++|+||++||++......... ...++...+||+|+.||+||+.+.+
T Consensus 1 ~~ly~P~~--~----~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~ 58 (212)
T TIGR01840 1 MYVYVPAG--L----TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSN 58 (212)
T ss_pred CEEEcCCC--C----CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccC
Confidence 47899965 2 35789999999998654432211 1345555689999999999987544
No 80
>PTZ00420 coronin; Provisional
Probab=97.64 E-value=0.016 Score=62.97 Aligned_cols=155 Identities=8% Similarity=0.010 Sum_probs=86.8
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCC-ce-------ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCce
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSS-PL-------PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNST 220 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~-~~-------~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~ 220 (548)
.|+|+++.++.+...++.|.+.++..+ +. .. .+... ...+....|+|++..+++.....
T Consensus 81 afsP~~~~lLASgS~DgtIrIWDi~t~-~~~~~~i~~p~~~L~gH----~~~V~sVaf~P~g~~iLaSgS~D-------- 147 (568)
T PTZ00420 81 QFNPCFSEILASGSEDLTIRVWEIPHN-DESVKEIKDPQCILKGH----KKKISIIDWNPMNYYIMCSSGFD-------- 147 (568)
T ss_pred EEcCCCCCEEEEEeCCCeEEEEECCCC-CccccccccceEEeecC----CCcEEEEEECCCCCeEEEEEeCC--------
Confidence 577765556666666776666565431 21 11 12211 23466788999998876543321
Q ss_pred eEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (548)
Q Consensus 221 ~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~ 300 (548)
..|.++|+.+++ ........+.+....|+|||+.|+-... ...|.+.|+.. ++. ...+.+..
T Consensus 148 gtIrIWDl~tg~---~~~~i~~~~~V~SlswspdG~lLat~s~--------D~~IrIwD~Rs-g~~--i~tl~gH~---- 209 (568)
T PTZ00420 148 SFVNIWDIENEK---RAFQINMPKKLSSLKWNIKGNLLSGTCV--------GKHMHIIDPRK-QEI--ASSFHIHD---- 209 (568)
T ss_pred CeEEEEECCCCc---EEEEEecCCcEEEEEECCCCCEEEEEec--------CCEEEEEECCC-CcE--EEEEeccc----
Confidence 368888998886 3222223345667889999998874331 34688889874 542 22333322
Q ss_pred cCC-cCc----eECcCCcEEEE-EeCCCCeeeEEEEeccC
Q 008927 301 ESP-TEP----KWSSKGELFFV-TDRKNGFWNLHKWIESN 334 (548)
Q Consensus 301 ~~~-~~~----~wspDG~L~~~-sd~~~g~~~Ly~~d~~~ 334 (548)
... ... .|++|++.++. ...+.....|.++|+..
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 111 112 34588884444 32212334677888753
No 81
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.033 Score=59.49 Aligned_cols=234 Identities=13% Similarity=0.101 Sum_probs=125.4
Q ss_pred eeEEECCEEEEEe-CCCCeEEEEeCCCCCCC---ceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 008927 149 AFRIFGDTVIFSN-YKDQRLYKHSIDSKDSS---PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (548)
Q Consensus 149 ~~~~~~~~i~F~~-~~~~~Ly~~~~~~~~~~---~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~ 224 (548)
.|+++|..++... ++.-.+|.. .+ .. .+.+.. ....+.+..|||||+.|+-...| ..|.
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~--~~--~~~~~~~~l~~----h~~~v~~~~fs~d~~~l~s~s~D---------~tir 228 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKL--EG--IKSNLLRELSG----HTRGVSDVAFSPDGSYLLSGSDD---------KTLR 228 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeec--cc--ccchhhccccc----cccceeeeEECCCCcEEEEecCC---------ceEE
Confidence 4667777766653 222234433 32 22 222211 23457788999999976664333 3577
Q ss_pred EEEC-CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCC
Q 008927 225 AIAL-NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (548)
Q Consensus 225 ~idl-~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~ 303 (548)
++|+ ..+.. .+.+.....++....|+|+|+.|+-.+. ...+.+.++.. |+ ..+.+.+.. ..+
T Consensus 229 iwd~~~~~~~--~~~l~gH~~~v~~~~f~p~g~~i~Sgs~--------D~tvriWd~~~-~~--~~~~l~~hs----~~i 291 (456)
T KOG0266|consen 229 IWDLKDDGRN--LKTLKGHSTYVTSVAFSPDGNLLVSGSD--------DGTVRIWDVRT-GE--CVRKLKGHS----DGI 291 (456)
T ss_pred EeeccCCCeE--EEEecCCCCceEEEEecCCCCEEEEecC--------CCcEEEEeccC-Ce--EEEeeeccC----Cce
Confidence 7777 44331 4555555566778899999966653332 24577778874 54 245565554 467
Q ss_pred cCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeE---eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCe
Q 008927 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL---AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (548)
Q Consensus 304 ~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~---~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~ 380 (548)
....+++||.++..... ++ .|..+|+.+++.+ .+...+. .. +.. ...+.| +++.|+ +...++.
T Consensus 292 s~~~f~~d~~~l~s~s~-d~--~i~vwd~~~~~~~~~~~~~~~~~-~~-~~~-----~~~fsp---~~~~ll-~~~~d~~ 357 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVSASY-DG--TIRVWDLETGSKLCLKLLSGAEN-SA-PVT-----SVQFSP---NGKYLL-SASLDRT 357 (456)
T ss_pred EEEEECCCCCEEEEcCC-Cc--cEEEEECCCCceeeeecccCCCC-CC-cee-----EEEECC---CCcEEE-EecCCCe
Confidence 77899999996555544 43 5777788788733 2221111 00 221 233443 666555 4444444
Q ss_pred EEEEEEECCCCce-EeecCCCc---e-eEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 381 SYLGILDDFGHSL-SLLDIPFT---D-IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 381 ~~L~~~dl~~g~~-~~l~~~~~---~-~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
. ..+|+..+.. ........ . +......++.+.+.++. ...|+.+++.++.
T Consensus 358 ~--~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~---d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 358 L--KLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE---DGSVYVWDSSSGG 412 (456)
T ss_pred E--EEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeC---CceEEEEeCCccc
Confidence 4 4445555543 22222111 1 12222223444444432 3578888877654
No 82
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.59 E-value=0.048 Score=54.53 Aligned_cols=208 Identities=14% Similarity=0.110 Sum_probs=114.3
Q ss_pred ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCcee-eeEECCCCCEEEEEEecCCCCCCCCc
Q 008927 195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA-FPRMDPRGERMAWIEWHHPNMPWDKA 273 (548)
Q Consensus 195 ~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~-~p~~SPDGk~La~~~~~~~~~p~~~~ 273 (548)
.+.+|.||+++++. .-. +-..+-+||++.++ .-.-..-++++. .| +.+++ +.-+.. ..
T Consensus 99 ~~~ls~dgk~~~V~-N~T------Pa~SVtVVDl~~~k---vv~ei~~PGC~~iyP-~~~~~--F~~lC~--------DG 157 (342)
T PF06433_consen 99 MFALSADGKFLYVQ-NFT------PATSVTVVDLAAKK---VVGEIDTPGCWLIYP-SGNRG--FSMLCG--------DG 157 (342)
T ss_dssp GEEE-TTSSEEEEE-EES------SSEEEEEEETTTTE---EEEEEEGTSEEEEEE-EETTE--EEEEET--------TS
T ss_pred ceEEccCCcEEEEE-ccC------CCCeEEEEECCCCc---eeeeecCCCEEEEEe-cCCCc--eEEEec--------CC
Confidence 46799999987553 332 34789999999987 433344555543 34 33333 333331 23
Q ss_pred eEEEEEecCCCceeeeE-EEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecc----ccccc
Q 008927 274 ELWVGYISENGDVYKRV-CVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS----LDAEF 347 (548)
Q Consensus 274 ~L~v~~~~~~g~~~~~~-~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~----~~~d~ 347 (548)
.+..+.++.+|+..... .+...+.+ .-+..+.++.++. ++|++-. .++|.+++.+.+.+..-+ .+.+
T Consensus 158 sl~~v~Ld~~Gk~~~~~t~~F~~~~d--p~f~~~~~~~~~~~~~F~Sy~----G~v~~~dlsg~~~~~~~~~~~~t~~e- 230 (342)
T PF06433_consen 158 SLLTVTLDADGKEAQKSTKVFDPDDD--PLFEHPAYSRDGGRLYFVSYE----GNVYSADLSGDSAKFGKPWSLLTDAE- 230 (342)
T ss_dssp CEEEEEETSTSSEEEEEEEESSTTTS---B-S--EEETTTTEEEEEBTT----SEEEEEEETTSSEEEEEEEESS-HHH-
T ss_pred ceEEEEECCCCCEeEeeccccCCCCc--ccccccceECCCCeEEEEecC----CEEEEEeccCCcccccCcccccCccc-
Confidence 56667777667632111 12221101 2345677776655 8888765 378999986665443221 0111
Q ss_pred CCCcccccCcc-eeeeeecCCCCEEEEEEEe-------CCeEEEEEEECCCCc-eEeecCCCceeEe--eeecCCEEEEE
Q 008927 348 SRPLWVFGINS-YEIIQSHGEKNLIACSYRQ-------NGRSYLGILDDFGHS-LSLLDIPFTDIDN--ITLGNDCLFVE 416 (548)
Q Consensus 348 ~~p~w~~~~~~-~~~~~~~~d~~~l~~~~~~-------~g~~~L~~~dl~~g~-~~~l~~~~~~~~~--~s~d~~~l~~~ 416 (548)
....|-+|+-. +++.+ ..++||+.... ++-.+||++|+++++ +.++..+. .+.+ ++.+++=++|.
T Consensus 231 ~~~~WrPGG~Q~~A~~~---~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 231 KADGWRPGGWQLIAYHA---ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp HHTTEEE-SSS-EEEET---TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEE
T ss_pred cccCcCCcceeeeeecc---ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEE
Confidence 12467766543 34432 67788876653 246899999999986 44555432 1222 35666656665
Q ss_pred EecCCCCCeEEEEEcCCCce
Q 008927 417 GASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 417 ~ss~~~p~~l~~~d~~~~~~ 436 (548)
.+. ....|+++|..+|+.
T Consensus 307 ~~~--~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 307 LSA--GDGTLDVYDAATGKL 324 (342)
T ss_dssp EET--TTTEEEEEETTT--E
T ss_pred EcC--CCCeEEEEeCcCCcE
Confidence 543 236899999998875
No 83
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.023 Score=60.68 Aligned_cols=198 Identities=17% Similarity=0.169 Sum_probs=109.0
Q ss_pred cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCc
Q 008927 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (548)
Q Consensus 194 ~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~ 273 (548)
....+||||+.++....+. .+...++.+++....+.+......+....|||||+.|+=.+ ...
T Consensus 163 ~~~~fs~~g~~l~~~~~~~---------~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s--------~D~ 225 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDG---------LIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGS--------DDK 225 (456)
T ss_pred EEEEEcCCCCeEEEccCCC---------cEEEeecccccchhhccccccccceeeeEECCCCcEEEEec--------CCc
Confidence 3467999999977753332 23333443332000233322333466789999999776222 245
Q ss_pred eEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCccc
Q 008927 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWV 353 (548)
Q Consensus 274 ~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~ 353 (548)
.|++.|+..++. ..+.+.+.. ..+....|+|+|++++.... ++ .+..+|..+++.........
T Consensus 226 tiriwd~~~~~~--~~~~l~gH~----~~v~~~~f~p~g~~i~Sgs~-D~--tvriWd~~~~~~~~~l~~hs-------- 288 (456)
T KOG0266|consen 226 TLRIWDLKDDGR--NLKTLKGHS----TYVTSVAFSPDGNLLVSGSD-DG--TVRIWDVRTGECVRKLKGHS-------- 288 (456)
T ss_pred eEEEeeccCCCe--EEEEecCCC----CceEEEEecCCCCEEEEecC-CC--cEEEEeccCCeEEEeeeccC--------
Confidence 788889854443 345565544 45788999999986555433 33 46666777777655443211
Q ss_pred ccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce---EeecCCC-c-eeEee--eecCCEEEEEEecCCCCCeE
Q 008927 354 FGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL---SLLDIPF-T-DIDNI--TLGNDCLFVEGASGVEPSSV 426 (548)
Q Consensus 354 ~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~---~~l~~~~-~-~~~~~--s~d~~~l~~~~ss~~~p~~l 426 (548)
.+.+..++.+ ++..|+ +...++ .|.++|+.++.. +.+.... . -+..+ +++++.++.... ...+
T Consensus 289 ~~is~~~f~~---d~~~l~-s~s~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~ 358 (456)
T KOG0266|consen 289 DGISGLAFSP---DGNLLV-SASYDG--TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTL 358 (456)
T ss_pred CceEEEEECC---CCCEEE-EcCCCc--cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeE
Confidence 1122344543 555554 444444 566778888873 2333221 1 22222 567776554432 2355
Q ss_pred EEEEcCCCc
Q 008927 427 AKVTLDDHK 435 (548)
Q Consensus 427 ~~~d~~~~~ 435 (548)
-.+|+..+.
T Consensus 359 ~~w~l~~~~ 367 (456)
T KOG0266|consen 359 KLWDLRSGK 367 (456)
T ss_pred EEEEccCCc
Confidence 666666554
No 84
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.59 E-value=0.049 Score=63.99 Aligned_cols=211 Identities=13% Similarity=0.140 Sum_probs=108.0
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCC-------CCCC-----Cc-eecceeeCCCCCEEEEEEeccCCC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPD-------YGEP-----LV-SYADGIFDPRFNRYVTVREDRRQD 215 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~-------~~~~-----~~-~~~~~~~SpDG~~i~~v~~~~~~~ 215 (548)
++.++++.||+.+....+|.++++.+ +..+.+... .++. .. .-.++.++|++..|++ ....
T Consensus 630 avd~~gn~LYVaDt~n~~Ir~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyV-ad~~--- 703 (1057)
T PLN02919 630 AYNAKKNLLYVADTENHALREIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYI-AMAG--- 703 (1057)
T ss_pred EEeCCCCEEEEEeCCCceEEEEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEE-EECC---
Confidence 34445666777665556888888875 444443211 0000 00 1124678897666544 3321
Q ss_pred CCCceeEEEEEECCCCCccCcEEeeec-------------CC--ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEe
Q 008927 216 ALNSTTEIVAIALNGQNIQEPKVLVSG-------------SD--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYI 280 (548)
Q Consensus 216 ~~~~~~~l~~idl~~g~~~~~~~L~~~-------------~~--~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~ 280 (548)
.+.|+++|+.++. ...+... .. .-....++|||++|+ ++.. ....|+++|+
T Consensus 704 ----~~~I~v~d~~~g~---v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LY-VADs------~n~~Irv~D~ 769 (1057)
T PLN02919 704 ----QHQIWEYNISDGV---TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELY-IADS------ESSSIRALDL 769 (1057)
T ss_pred ----CCeEEEEECCCCe---EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEE-EEEC------CCCeEEEEEC
Confidence 2579999988875 4333210 00 012357899999875 4422 2467999998
Q ss_pred cCCCceeeeEEEcCCCC-------------C-----cccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecc
Q 008927 281 SENGDVYKRVCVAGFDP-------------T-----IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS 342 (548)
Q Consensus 281 ~~~g~~~~~~~l~~~~~-------------~-----~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~ 342 (548)
+. +. ...+.+... + .........+++||++ |++|. +...|.++|++++.+..+..
T Consensus 770 ~t-g~---~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L-YVADs--~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 770 KT-GG---SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI-YVADS--YNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred CC-Cc---EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcE-EEEEC--CCCEEEEEECCCCeEEEEec
Confidence 74 32 122211000 0 0011234568899975 55554 34568889988887765542
Q ss_pred c-ccccC-----CCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce
Q 008927 343 L-DAEFS-----RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 393 (548)
Q Consensus 343 ~-~~d~~-----~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~ 393 (548)
. ...+. .... .......+.+ ++ .||++- .+...|.++|+++++.
T Consensus 843 ~G~~G~~dG~~~~a~l-~~P~GIavd~---dG-~lyVaD--t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 843 TGKAGFKDGKALKAQL-SEPAGLALGE---NG-RLFVAD--TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCcCCCCCccccccc-CCceEEEEeC---CC-CEEEEE--CCCCEEEEEECCCCcc
Confidence 1 00000 0000 0111234432 44 455432 3445677888888765
No 85
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.54 E-value=0.00059 Score=75.43 Aligned_cols=96 Identities=18% Similarity=0.389 Sum_probs=65.7
Q ss_pred CEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEe-eecCCceeeeEECCCCCEEEE-EEecCCCCCCCCceEEEEEe
Q 008927 203 NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL-VSGSDFYAFPRMDPRGERMAW-IEWHHPNMPWDKAELWVGYI 280 (548)
Q Consensus 203 ~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L-~~~~~~~~~p~~SPDGk~La~-~~~~~~~~p~~~~~L~v~~~ 280 (548)
.+|+|+... ..+|..+|.++.+ .+.+ .+...-...|.|||||++||| ++...- + ....||+.++
T Consensus 319 tkiAfv~~~--------~~~L~~~D~dG~n---~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~--~-g~s~vYv~~L 384 (912)
T TIGR02171 319 AKLAFRNDV--------TGNLAYIDYTKGA---SRAVEIEDTISVYHPDISPDGKKVAFCTGIEGL--P-GKSSVYVRNL 384 (912)
T ss_pred eeEEEEEcC--------CCeEEEEecCCCC---ceEEEecCCCceecCcCCCCCCEEEEEEeecCC--C-CCceEEEEeh
Confidence 467887432 1389999999998 8877 666666788999999999999 653320 0 2568999999
Q ss_pred cCCCceeeeEEEcCCCCCcccCCcCceE--CcCCc--EEEEEeC
Q 008927 281 SENGDVYKRVCVAGFDPTIVESPTEPKW--SSKGE--LFFVTDR 320 (548)
Q Consensus 281 ~~~g~~~~~~~l~~~~~~~~~~~~~~~w--spDG~--L~~~sd~ 320 (548)
.+.|. ....|.- ++..-|+| ..+|. |+|++|.
T Consensus 385 ~t~~~--~~vkl~v------e~aaiprwrv~e~gdt~ivyv~~a 420 (912)
T TIGR02171 385 NASGS--GLVKLPV------ENAAIPRWRVLENGDTVIVYVSDA 420 (912)
T ss_pred hccCC--CceEeec------ccccccceEecCCCCeEEEEEcCC
Confidence 87654 2222322 22334666 56776 8888765
No 86
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.54 E-value=0.0034 Score=62.68 Aligned_cols=241 Identities=12% Similarity=0.035 Sum_probs=124.1
Q ss_pred CCccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCC--CCccccceeeCCeeeEEECCEEEEEeCCCC
Q 008927 88 SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKE--YAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ 165 (548)
Q Consensus 88 ~~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~--~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~ 165 (548)
...+.-++|||.++..-..+ ++| .++..+.+. |+.+.+-+.. +++.+. +|.|||.+++--+ .+.
T Consensus 269 ~~~V~yi~wSPDdryLlaCg-~~e----~~~lwDv~t-gd~~~~y~~~~~~S~~sc-------~W~pDg~~~V~Gs-~dr 334 (519)
T KOG0293|consen 269 SQPVSYIMWSPDDRYLLACG-FDE----VLSLWDVDT-GDLRHLYPSGLGFSVSSC-------AWCPDGFRFVTGS-PDR 334 (519)
T ss_pred cCceEEEEECCCCCeEEecC-chH----heeeccCCc-chhhhhcccCcCCCccee-------EEccCCceeEecC-CCC
Confidence 34555667777444322221 222 244555443 3444444432 444332 6899988754432 456
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc
Q 008927 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (548)
Q Consensus 166 ~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~ 245 (548)
+++..+++|+ ....-... ..-++.+++.++||+.++.+..+. .|..++.++.. .+-+.+...-
T Consensus 335 ~i~~wdlDgn--~~~~W~gv---r~~~v~dlait~Dgk~vl~v~~d~---------~i~l~~~e~~~---dr~lise~~~ 397 (519)
T KOG0293|consen 335 TIIMWDLDGN--ILGNWEGV---RDPKVHDLAITYDGKYVLLVTVDK---------KIRLYNREARV---DRGLISEEQP 397 (519)
T ss_pred cEEEecCCcc--hhhccccc---ccceeEEEEEcCCCcEEEEEeccc---------ceeeechhhhh---hhccccccCc
Confidence 8999999873 21111100 012477889999999999886553 46777877765 3424333444
Q ss_pred eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc-CCcEEEEEeCCCCe
Q 008927 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGELFFVTDRKNGF 324 (548)
Q Consensus 246 ~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp-DG~L~~~sd~~~g~ 324 (548)
+....+|-|||.+. +.- ...++.+-|++. ..+ ++...|...+ ..+-.-.|.- |.+++... +.-
T Consensus 398 its~~iS~d~k~~L-vnL-------~~qei~LWDl~e-~~l--v~kY~Ghkq~--~fiIrSCFgg~~~~fiaSG---SED 461 (519)
T KOG0293|consen 398 ITSFSISKDGKLAL-VNL-------QDQEIHLWDLEE-NKL--VRKYFGHKQG--HFIIRSCFGGGNDKFIASG---SED 461 (519)
T ss_pred eeEEEEcCCCcEEE-EEc-------ccCeeEEeecch-hhH--HHHhhccccc--ceEEEeccCCCCcceEEec---CCC
Confidence 56678999999554 432 134677778863 221 1112221100 0000011211 11233221 223
Q ss_pred eeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927 325 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (548)
Q Consensus 325 ~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~ 386 (548)
..+|.++..+|+...+.++- .-..+..+|+| .+..+++++.++|.-+|+-.
T Consensus 462 ~kvyIWhr~sgkll~~LsGH--------s~~vNcVswNP---~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 462 SKVYIWHRISGKLLAVLSGH--------SKTVNCVSWNP---ADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred ceEEEEEccCCceeEeecCC--------cceeeEEecCC---CCHHHhhccCCCCeEEEecC
Confidence 46888888787764433221 11122234554 55567667777777777643
No 87
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.54 E-value=0.012 Score=59.05 Aligned_cols=235 Identities=13% Similarity=0.089 Sum_probs=122.9
Q ss_pred CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEEC-C-EEEEEeCCCC
Q 008927 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-D-TVIFSNYKDQ 165 (548)
Q Consensus 89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~-~-~i~F~~~~~~ 165 (548)
+.+....+|+ ++.++--. - .|...+|....- +..+..- .....-|+..|.|.. + .|+= ...|+
T Consensus 176 rPis~~~fS~ds~~laT~s-w---sG~~kvW~~~~~---~~~~~l~------gH~~~v~~~~fhP~~~~~~lat-~s~Dg 241 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGS-W---SGLVKVWSVPQC---NLLQTLR------GHTSRVGAAVFHPVDSDLNLAT-ASADG 241 (459)
T ss_pred CcceeeEeecCCCeEEEee-c---CCceeEeecCCc---ceeEEEe------ccccceeeEEEccCCCccceee-eccCC
Confidence 4455555565 44433221 1 466777766432 2222221 111123556788873 3 3433 23344
Q ss_pred --eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927 166 --RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (548)
Q Consensus 166 --~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~ 243 (548)
.||.++-+ .....|+.. ..|++...|.|+|+.|+-.+-|+ ..+| +|+.++. .-.+.+|.
T Consensus 242 tvklw~~~~e---~~l~~l~gH----~~RVs~VafHPsG~~L~TasfD~-------tWRl--WD~~tk~---ElL~QEGH 302 (459)
T KOG0272|consen 242 TVKLWKLSQE---TPLQDLEGH----LARVSRVAFHPSGKFLGTASFDS-------TWRL--WDLETKS---ELLLQEGH 302 (459)
T ss_pred ceeeeccCCC---cchhhhhcc----hhhheeeeecCCCceeeeccccc-------chhh--cccccch---hhHhhccc
Confidence 55554432 233556654 46888999999999988766554 1234 4888886 43444554
Q ss_pred C-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCC
Q 008927 244 D-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (548)
Q Consensus 244 ~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~ 322 (548)
. -+...+|.|||.-++ .. ... .-..|| |+.+ |. ....+.+.- ..+....|||+|..+..... +
T Consensus 303 s~~v~~iaf~~DGSL~~-tG-GlD----~~~RvW--DlRt-gr--~im~L~gH~----k~I~~V~fsPNGy~lATgs~-D 366 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAA-TG-GLD----SLGRVW--DLRT-GR--CIMFLAGHI----KEILSVAFSPNGYHLATGSS-D 366 (459)
T ss_pred ccccceeEecCCCceee-cc-Ccc----chhhee--eccc-Cc--EEEEecccc----cceeeEeECCCceEEeecCC-C
Confidence 3 356789999999554 22 111 123444 6653 43 244555543 45778899999974444322 4
Q ss_pred CeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (548)
Q Consensus 323 g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~ 385 (548)
+...||.+. ..+...+.+. ...-++...+.| ..+.+++++..++...||.
T Consensus 367 nt~kVWDLR--~r~~ly~ipA--------H~nlVS~Vk~~p---~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 367 NTCKVWDLR--MRSELYTIPA--------HSNLVSQVKYSP---QEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred CcEEEeeec--ccccceeccc--------ccchhhheEecc---cCCeEEEEcccCcceeeec
Confidence 444454432 2222111121 111112223333 4666777777777777774
No 88
>PRK10566 esterase; Provisional
Probab=97.52 E-value=0.00014 Score=70.70 Aligned_cols=55 Identities=11% Similarity=0.051 Sum_probs=42.6
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 474 ~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
.+..+.|.|.+. .++++|+||++||.+.... .|....+.|+++||.|+.+|+||.
T Consensus 11 ~~~~~~~~p~~~-----~~~~~p~vv~~HG~~~~~~--~~~~~~~~l~~~G~~v~~~d~~g~ 65 (249)
T PRK10566 11 GIEVLHAFPAGQ-----RDTPLPTVFFYHGFTSSKL--VYSYFAVALAQAGFRVIMPDAPMH 65 (249)
T ss_pred CcceEEEcCCCC-----CCCCCCEEEEeCCCCcccc--hHHHHHHHHHhCCCEEEEecCCcc
Confidence 355677888531 1356799999999976543 466778999999999999999985
No 89
>PRK10162 acetyl esterase; Provisional
Probab=97.45 E-value=0.0004 Score=70.38 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=52.0
Q ss_pred CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc-CccChHHHHHHh-cCcEEEEeCCCCCCCC
Q 008927 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTS-RGWAFVDVNYGGSTGL 538 (548)
Q Consensus 461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~-~~~~~~~Q~~as-rGyaVl~~NyRGStGy 538 (548)
.+.+++++. +| .|...+|.|.. +..|+||++|||...... ..+......++. .||.|+.+|||.+..+
T Consensus 57 ~~~~~i~~~-~g-~i~~~~y~P~~--------~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~ 126 (318)
T PRK10162 57 TRAYMVPTP-YG-QVETRLYYPQP--------DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA 126 (318)
T ss_pred EEEEEEecC-CC-ceEEEEECCCC--------CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC
Confidence 566778886 77 59999999942 235999999999865433 234556677887 5999999999999874
No 90
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.42 E-value=0.0043 Score=65.08 Aligned_cols=199 Identities=14% Similarity=0.169 Sum_probs=106.6
Q ss_pred HhcCCCccCceEEcC-C-CcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEe
Q 008927 84 VSGASKRLGGTAVDG-H-GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSN 161 (548)
Q Consensus 84 l~~~~~~~~~~~~sp-g-~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~ 161 (548)
|++. ..+.+++|.| . .+++.- .++|+.+||++...| ......||.. -....++.|+|+.
T Consensus 624 l~Ng-t~vtDl~WdPFD~~rLAVa----~ddg~i~lWr~~a~g-l~e~~~tPe~-------------~lt~h~eKI~slR 684 (1012)
T KOG1445|consen 624 LFNG-TLVTDLHWDPFDDERLAVA----TDDGQINLWRLTANG-LPENEMTPEK-------------ILTIHGEKITSLR 684 (1012)
T ss_pred cccC-ceeeecccCCCChHHeeec----ccCceEEEEEeccCC-CCcccCCcce-------------eeecccceEEEEE
Confidence 4443 5566777777 3 445442 246899999997763 2333333431 2233455666664
Q ss_pred CC------------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927 162 YK------------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (548)
Q Consensus 162 ~~------------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~ 229 (548)
.- +-.|-+-|+... ..--.|... ...+-+++|||||++|+-|+.|. .|.+++..
T Consensus 685 fHPLAadvLa~asyd~Ti~lWDl~~~-~~~~~l~gH----tdqIf~~AWSpdGr~~AtVcKDg---------~~rVy~Pr 750 (1012)
T KOG1445|consen 685 FHPLAADVLAVASYDSTIELWDLANA-KLYSRLVGH----TDQIFGIAWSPDGRRIATVCKDG---------TLRVYEPR 750 (1012)
T ss_pred ecchhhhHhhhhhccceeeeeehhhh-hhhheeccC----cCceeEEEECCCCcceeeeecCc---------eEEEeCCC
Confidence 21 122222244431 122233332 12466789999999999998763 57888888
Q ss_pred CCCccCcEEeeecCCce----eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC-C-CceeeeEEEcCCCCCcccCC
Q 008927 230 GQNIQEPKVLVSGSDFY----AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-N-GDVYKRVCVAGFDPTIVESP 303 (548)
Q Consensus 230 ~g~~~~~~~L~~~~~~~----~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~-~-g~~~~~~~l~~~~~~~~~~~ 303 (548)
+++ +.|.++.+-. +-..|-=||+.|+.+..+.. ...+|-+++... + +.+. ...+.-. .+.
T Consensus 751 s~e----~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~----SeRQv~~Y~Aq~l~~~pl~-t~~lDva-----ps~ 816 (1012)
T KOG1445|consen 751 SRE----QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS----SERQVQMYDAQTLDLRPLY-TQVLDVA-----PSP 816 (1012)
T ss_pred CCC----CccccCCCCccCcceeEEEEecCcEEEEeccccc----chhhhhhhhhhhccCCcce-eeeeccc-----Ccc
Confidence 775 5666654422 23356668887776553322 123455554332 1 1110 1111111 244
Q ss_pred cCceECcCCcEEEEEeCCCCeeeEEE
Q 008927 304 TEPKWSSKGELFFVTDRKNGFWNLHK 329 (548)
Q Consensus 304 ~~~~wspDG~L~~~sd~~~g~~~Ly~ 329 (548)
.-|.+.+|..++|++-+++-+-++|-
T Consensus 817 LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 817 LVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred ccccccCCCceEEEecCCCceEEEEE
Confidence 56788889888888876444444443
No 91
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=97.40 E-value=0.00041 Score=70.68 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=50.8
Q ss_pred CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
+++...|++. ||.++++..+.|.+ .+...|+||++||..... ...|....+.|+++||.|+.+|+||.
T Consensus 31 ~~~~~~~~~~-dg~~l~~~~~~~~~------~~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rGh 98 (330)
T PLN02298 31 KGSKSFFTSP-RGLSLFTRSWLPSS------SSPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEGH 98 (330)
T ss_pred ccccceEEcC-CCCEEEEEEEecCC------CCCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCCC
Confidence 3456678887 99999999988742 123458999999986432 22344456789999999999999995
No 92
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.007 Score=61.38 Aligned_cols=254 Identities=10% Similarity=0.073 Sum_probs=134.3
Q ss_pred EEEEEeCCCC--eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927 156 TVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (548)
Q Consensus 156 ~i~F~~~~~~--~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~ 233 (548)
.|+.+..-++ +||.+| | ..-..|+...- ...-+.-..|.|+|+..+|++.. +..+|.+|+.+.+
T Consensus 226 plllvaG~d~~lrifqvD--G--k~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~r--------rky~ysyDle~ak- 291 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIFQVD--G--KVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSGR--------RKYLYSYDLETAK- 291 (514)
T ss_pred ceEEEecCCCcEEEEEec--C--ccChhheeeee-ccCccceeeecCCCceEEEeccc--------ceEEEEeeccccc-
Confidence 4666665555 555554 4 22234444210 01224455799999977776543 4589999999988
Q ss_pred cCcEEeeec----CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927 234 QEPKVLVSG----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (548)
Q Consensus 234 ~~~~~L~~~----~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws 309 (548)
...|... ......+.+|||++.|++.. ....|+++...+ +++ +...... +.+..+.|+
T Consensus 292 --~~k~~~~~g~e~~~~e~FeVShd~~fia~~G--------~~G~I~lLhakT-~el-----i~s~Kie--G~v~~~~fs 353 (514)
T KOG2055|consen 292 --VTKLKPPYGVEEKSMERFEVSHDSNFIAIAG--------NNGHIHLLHAKT-KEL-----ITSFKIE--GVVSDFTFS 353 (514)
T ss_pred --cccccCCCCcccchhheeEecCCCCeEEEcc--------cCceEEeehhhh-hhh-----hheeeec--cEEeeEEEe
Confidence 5554322 22455678999999888654 145788887763 432 1111101 457788999
Q ss_pred cCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC-
Q 008927 310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD- 388 (548)
Q Consensus 310 pDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl- 388 (548)
.||+.++++.. .| ++|.+|+..........++... .+.+++.++ ++. ++.+..+.|.-.||-.+-
T Consensus 354 Sdsk~l~~~~~-~G--eV~v~nl~~~~~~~rf~D~G~v-------~gts~~~S~---ng~-ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 354 SDSKELLASGG-TG--EVYVWNLRQNSCLHRFVDDGSV-------HGTSLCISL---NGS-YLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred cCCcEEEEEcC-Cc--eEEEEecCCcceEEEEeecCcc-------ceeeeeecC---CCc-eEEeccCcceEEEeccchh
Confidence 99994444432 34 8999998766543332221111 122344443 444 334445567777775442
Q ss_pred -CCCceEeecCC---CceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCceeeeeeEEEecCCCCCCccCCCccCCe
Q 008927 389 -FGHSLSLLDIP---FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPE 462 (548)
Q Consensus 389 -~~g~~~~l~~~---~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~pe 462 (548)
.++..+++..- -..|..+ ..|.. |+.++++ .....+-++.+..-. + -+ +.+.....+..+.
T Consensus 420 ~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~-~~knalrLVHvPS~T--------V--Fs-NfP~~n~~vg~vt 486 (514)
T KOG2055|consen 420 FASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASR-VKKNALRLVHVPSCT--------V--FS-NFPTSNTKVGHVT 486 (514)
T ss_pred hccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhh-ccccceEEEecccee--------e--ec-cCCCCCCcccceE
Confidence 22344444321 1234444 44444 4444443 234445555443221 1 12 2333345566666
Q ss_pred EEEeec
Q 008927 463 LIEFPT 468 (548)
Q Consensus 463 ~i~~~s 468 (548)
.+.|.-
T Consensus 487 c~aFSP 492 (514)
T KOG2055|consen 487 CMAFSP 492 (514)
T ss_pred EEEecC
Confidence 666643
No 93
>PTZ00420 coronin; Provisional
Probab=97.38 E-value=0.054 Score=58.83 Aligned_cols=217 Identities=10% Similarity=0.055 Sum_probs=114.0
Q ss_pred CCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCC-CcccCCC--CCC-ccccceeeCCeeeEEECCEEEEEeC
Q 008927 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDE-PSDITPK--EYA-VRTTAQEYGGGAFRIFGDTVIFSNY 162 (548)
Q Consensus 88 ~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~-~~~lt~~--~~~-~r~~v~~ygg~~~~~~~~~i~F~~~ 162 (548)
...+..+.++| .+.++.... ++|...||.+... +. ...+... .+. ....+ ..-.|.|++..++.+..
T Consensus 74 ~~~V~~lafsP~~~~lLASgS---~DgtIrIWDi~t~--~~~~~~i~~p~~~L~gH~~~V---~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGS---EDLTIRVWEIPHN--DESVKEIKDPQCILKGHKKKI---SIIDWNPMNYYIMCSSG 145 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEe---CCCeEEEEECCCC--CccccccccceEEeecCCCcE---EEEEECCCCCeEEEEEe
Confidence 35677888998 555554433 3577788877543 11 1111100 000 01111 12367788777776666
Q ss_pred CCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee
Q 008927 163 KDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS 241 (548)
Q Consensus 163 ~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~ 241 (548)
.++.|.+.|+.. ++. ..+... ..+..+.|+|||+.|+..+.+ ..|.++|+.+++. ...+..
T Consensus 146 ~DgtIrIWDl~t--g~~~~~i~~~-----~~V~SlswspdG~lLat~s~D---------~~IrIwD~Rsg~~--i~tl~g 207 (568)
T PTZ00420 146 FDSFVNIWDIEN--EKRAFQINMP-----KKLSSLKWNIKGNLLSGTCVG---------KHMHIIDPRKQEI--ASSFHI 207 (568)
T ss_pred CCCeEEEEECCC--CcEEEEEecC-----CcEEEEEECCCCCEEEEEecC---------CEEEEEECCCCcE--EEEEec
Confidence 677777778875 332 233221 235677899999987665433 3688889998861 222221
Q ss_pred cCCc-----eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEE
Q 008927 242 GSDF-----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 316 (548)
Q Consensus 242 ~~~~-----~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~ 316 (548)
..+. ...-.|++|+++|+-...+.. ...+|.+.|+...++ ....+.... . .....|.|.++..++|
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~----~~R~VkLWDlr~~~~--pl~~~~ld~-~--~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKN----NMREMKLWDLKNTTS--ALVTMSIDN-A--SAPLIPHYDESTGLIY 278 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCC----CccEEEEEECCCCCC--ceEEEEecC-C--ccceEEeeeCCCCCEE
Confidence 1111 111235799998875553321 124688889874332 122222111 1 2233467776644334
Q ss_pred EEeCCCCeeeEEEEeccCCeeEeec
Q 008927 317 VTDRKNGFWNLHKWIESNNEVLAIY 341 (548)
Q Consensus 317 ~sd~~~g~~~Ly~~d~~~g~~~~l~ 341 (548)
++-.+++ .|+.+++..+....|.
T Consensus 279 lsGkGD~--tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 279 LIGKGDG--NCRYYQHSLGSIRKVN 301 (568)
T ss_pred EEEECCC--eEEEEEccCCcEEeec
Confidence 4333244 4555565556555554
No 94
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.015 Score=57.33 Aligned_cols=99 Identities=12% Similarity=0.113 Sum_probs=61.3
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEE-EEE
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV-AIA 227 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~-~id 227 (548)
.|..||..++=.+..+..|-+-+++. +.-.+|-... ...+..+.|||||+.|++..-+. ...|| .-.
T Consensus 202 qwn~dgt~l~tAS~gsssi~iWdpdt--g~~~pL~~~g---lgg~slLkwSPdgd~lfaAt~da-------vfrlw~e~q 269 (445)
T KOG2139|consen 202 QWNEDGTILVTASFGSSSIMIWDPDT--GQKIPLIPKG---LGGFSLLKWSPDGDVLFAATCDA-------VFRLWQENQ 269 (445)
T ss_pred EEcCCCCEEeecccCcceEEEEcCCC--CCcccccccC---CCceeeEEEcCCCCEEEEecccc-------eeeeehhcc
Confidence 45566666665555566666667776 5556665431 23567789999999987753332 34566 222
Q ss_pred CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEec
Q 008927 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWH 264 (548)
Q Consensus 228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~ 264 (548)
..+.+ +-.+.++ ......|||+|+.|.|....
T Consensus 270 ~wt~e---rw~lgsg--rvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 270 SWTKE---RWILGSG--RVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred cceec---ceeccCC--ceeeeeecCCCCEEEEEEcC
Confidence 23333 3333333 56677999999999998743
No 95
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.32 E-value=0.026 Score=60.71 Aligned_cols=158 Identities=15% Similarity=0.129 Sum_probs=89.2
Q ss_pred eeCCeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 008927 144 EYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (548)
Q Consensus 144 ~ygg~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l 223 (548)
.-|+-.|++||..|++.. .++|.++|+..+..-..++-. ...+..++.||||..++.+.|+ .+.
T Consensus 16 r~Gnl~ft~dG~sviSPv--GNrvsv~dLknN~S~Tl~~e~-----~~NI~~ialSp~g~lllavdE~---------g~~ 79 (893)
T KOG0291|consen 16 RAGNLVFTKDGNSVISPV--GNRVSVFDLKNNKSYTLPLET-----RYNITRIALSPDGTLLLAVDER---------GRA 79 (893)
T ss_pred ecCcEEECCCCCEEEecc--CCEEEEEEccCCcceeEEeec-----CCceEEEEeCCCceEEEEEcCC---------CcE
Confidence 335567888888888876 678999999753122223322 3467788999999988887443 234
Q ss_pred EEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCce---eeeEEEcCCCCCcc
Q 008927 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV---YKRVCVAGFDPTIV 300 (548)
Q Consensus 224 ~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~---~~~~~l~~~~~~~~ 300 (548)
..+++..... ...+. ...-+....|||||+.+|....+ --+||..+-.-.+++ ...+...+..
T Consensus 80 ~lvs~~~r~V--lh~f~-fk~~v~~i~fSPng~~fav~~gn-------~lqiw~~P~~~~~~~~pFvl~r~~~g~f---- 145 (893)
T KOG0291|consen 80 LLVSLLSRSV--LHRFN-FKRGVGAIKFSPNGKFFAVGCGN-------LLQIWHAPGEIKNEFNPFVLHRTYLGHF---- 145 (893)
T ss_pred EEEeccccee--eEEEe-ecCccceEEECCCCcEEEEEecc-------eeEEEecCcchhcccCcceEeeeecCCc----
Confidence 4455543320 11112 22235667899999998844311 234554432111111 1122233332
Q ss_pred cCCcCceECcCCcEEEEEeCCCCeeeEEEEec
Q 008927 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE 332 (548)
Q Consensus 301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~ 332 (548)
..+....||.|.+++.+..+ +-...|+-++.
T Consensus 146 ddi~si~Ws~DSr~l~~gsr-D~s~rl~~v~~ 176 (893)
T KOG0291|consen 146 DDITSIDWSDDSRLLVTGSR-DLSARLFGVDG 176 (893)
T ss_pred cceeEEEeccCCceEEeccc-cceEEEEEecc
Confidence 35677899999986666444 33345665553
No 96
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=97.31 E-value=0.17 Score=48.34 Aligned_cols=192 Identities=13% Similarity=0.140 Sum_probs=103.4
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCCc--eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927 155 DTVIFSNYKDQRLYKHSIDSKDSSP--LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (548)
Q Consensus 155 ~~i~F~~~~~~~Ly~~~~~~~~~~~--~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~ 232 (548)
+.|+.+...+..|-..+..+. ..- +.++.+. ....+...+|||.|+.|+.-+-+. ...||. -..++
T Consensus 27 g~ilAscg~Dk~vriw~~~~~-~s~~ck~vld~~--hkrsVRsvAwsp~g~~La~aSFD~-------t~~Iw~--k~~~e 94 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSG-DSWTCKTVLDDG--HKRSVRSVAWSPHGRYLASASFDA-------TVVIWK--KEDGE 94 (312)
T ss_pred ceEEEeecCCceEEEEecCCC-CcEEEEEecccc--chheeeeeeecCCCcEEEEeeccc-------eEEEee--cCCCc
Confidence 456666655655555555420 122 2222221 122356778999999776644332 123332 22232
Q ss_pred ccCcEEe--eecCCc-eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927 233 IQEPKVL--VSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (548)
Q Consensus 233 ~~~~~~L--~~~~~~-~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws 309 (548)
-+.+ .+|.+. +-..+||++|.+||-.+++ ..+|+..++.++++.-.-+|.+.. ..+-...|.
T Consensus 95 ---fecv~~lEGHEnEVK~Vaws~sG~~LATCSRD--------KSVWiWe~deddEfec~aVL~~Ht----qDVK~V~WH 159 (312)
T KOG0645|consen 95 ---FECVATLEGHENEVKCVAWSASGNYLATCSRD--------KSVWIWEIDEDDEFECIAVLQEHT----QDVKHVIWH 159 (312)
T ss_pred ---eeEEeeeeccccceeEEEEcCCCCEEEEeeCC--------CeEEEEEecCCCcEEEEeeecccc----ccccEEEEc
Confidence 2222 344433 5567899999999966633 358888887656543334454443 457788999
Q ss_pred cCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927 310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (548)
Q Consensus 310 pDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~ 385 (548)
|--.|+|.... ++.-.+|+-.. ++..+.+...+ ....-.|.. .|.+ .|.+|+ +..+++.-.|++
T Consensus 160 Pt~dlL~S~SY-DnTIk~~~~~~-dddW~c~~tl~-g~~~TVW~~-----~F~~---~G~rl~-s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 160 PTEDLLFSCSY-DNTIKVYRDED-DDDWECVQTLD-GHENTVWSL-----AFDN---IGSRLV-SCSDDGTVSIWR 223 (312)
T ss_pred CCcceeEEecc-CCeEEEEeecC-CCCeeEEEEec-CccceEEEE-----EecC---CCceEE-EecCCcceEeee
Confidence 97558888665 45556666553 44333221111 111234542 3432 566665 455677777777
No 97
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=97.31 E-value=0.00037 Score=75.26 Aligned_cols=63 Identities=29% Similarity=0.385 Sum_probs=45.3
Q ss_pred EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhc-C-cEEEEeCCC-CCCCCChhh
Q 008927 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-G-WAFVDVNYG-GSTGLSSVP 542 (548)
Q Consensus 475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asr-G-yaVl~~NyR-GStGyG~~f 542 (548)
++--+|.|.+.. +++++|+||+||||+......... ....|+.+ + ++|+.+||| |..||+...
T Consensus 79 l~l~i~~p~~~~----~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~ 144 (493)
T cd00312 79 LYLNVYTPKNTK----PGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTG 144 (493)
T ss_pred CeEEEEeCCCCC----CCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCC
Confidence 667788886421 256789999999999865444333 33556654 3 999999999 999987543
No 98
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=97.26 E-value=0.00053 Score=75.01 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=47.1
Q ss_pred eccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccc-cCccC-hHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927 467 PTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILN-LSIQYWTSRGWAFVDVNYGGSTGLS 539 (548)
Q Consensus 467 ~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~-~~~~~-~~~Q~~asrGyaVl~~NyRGStGyG 539 (548)
+.+ ||.++++.+|.|++ .++.|+||++||-..... ...+. ...++|+++||+|+.+|+||..+-+
T Consensus 2 ~~~-DG~~L~~~~~~P~~-------~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~ 68 (550)
T TIGR00976 2 PMR-DGTRLAIDVYRPAG-------GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASE 68 (550)
T ss_pred cCC-CCCEEEEEEEecCC-------CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCC
Confidence 455 99999999999963 347899999997432211 01122 3457899999999999999976543
No 99
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.25 E-value=0.013 Score=60.18 Aligned_cols=217 Identities=10% Similarity=0.018 Sum_probs=107.6
Q ss_pred CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCC------CccccceeeCCeeeEEECCEEEEEe
Q 008927 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEY------AVRTTAQEYGGGAFRIFGDTVIFSN 161 (548)
Q Consensus 89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~------~~r~~v~~ygg~~~~~~~~~i~F~~ 161 (548)
-.+..+++|| |+.|..+.... ..-.++.+| -+..+..-++. +-...+.+.--|.|.|+....+.+.
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~a------qakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~ 287 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSA------QAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC 287 (641)
T ss_pred cccceeeecCCCCeEEEEecCc------ceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe
Confidence 3456678888 88888886432 222222222 12221111111 1122233333467888877666665
Q ss_pred CCCC--eEEEEeCCCCCCCceecCCCC-CCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE
Q 008927 162 YKDQ--RLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV 238 (548)
Q Consensus 162 ~~~~--~Ly~~~~~~~~~~~~~lT~~~-~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~ 238 (548)
..|+ +||-++-.. .+.+.+.+.. +...+......|+|||++|+.-+.+. .|-.++..+-... +..
T Consensus 288 s~DgtlRiWdv~~~k--~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG---------SIQ~W~~~~~~v~-p~~ 355 (641)
T KOG0772|consen 288 SYDGTLRIWDVNNTK--SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG---------SIQIWDKGSRTVR-PVM 355 (641)
T ss_pred cCCCcEEEEecCCch--hheeEEeeccCCCcccCceeeecCCCcchhhhcccCC---------ceeeeecCCcccc-cce
Confidence 5555 677655332 3333332211 11123355778999999988765543 3334443222100 222
Q ss_pred eee----cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcE
Q 008927 239 LVS----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 314 (548)
Q Consensus 239 L~~----~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L 314 (548)
... ...-.....||+||++|+ ++.. ...|-+.|+..-.+ .....++-... ..-....||||.+|
T Consensus 356 ~vk~AH~~g~~Itsi~FS~dg~~Ll--SRg~------D~tLKvWDLrq~kk--pL~~~tgL~t~--~~~tdc~FSPd~kl 423 (641)
T KOG0772|consen 356 KVKDAHLPGQDITSISFSYDGNYLL--SRGF------DDTLKVWDLRQFKK--PLNVRTGLPTP--FPGTDCCFSPDDKL 423 (641)
T ss_pred EeeeccCCCCceeEEEeccccchhh--hccC------CCceeeeecccccc--chhhhcCCCcc--CCCCccccCCCceE
Confidence 211 111256778999999987 2222 12355556653222 11111111100 22356789999998
Q ss_pred EEEEe---CCCCeeeEEEEeccCCe
Q 008927 315 FFVTD---RKNGFWNLHKWIESNNE 336 (548)
Q Consensus 315 ~~~sd---~~~g~~~Ly~~d~~~g~ 336 (548)
++... ++.+...|+.+|..+=+
T Consensus 424 i~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 424 ILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred EEecccccCCCCCceEEEEecccee
Confidence 77621 22334478888865433
No 100
>PRK13604 luxD acyl transferase; Provisional
Probab=97.22 E-value=0.00085 Score=66.60 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=47.1
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 466 ~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
..+. ||.++.||+.+|.+. ..++.|+||..||= +... ..|...+.+|+++||+|+..|+||+
T Consensus 14 ~~~~-dG~~L~Gwl~~P~~~-----~~~~~~~vIi~HGf-~~~~-~~~~~~A~~La~~G~~vLrfD~rg~ 75 (307)
T PRK13604 14 ICLE-NGQSIRVWETLPKEN-----SPKKNNTILIASGF-ARRM-DHFAGLAEYLSSNGFHVIRYDSLHH 75 (307)
T ss_pred EEcC-CCCEEEEEEEcCccc-----CCCCCCEEEEeCCC-CCCh-HHHHHHHHHHHHCCCEEEEecCCCC
Confidence 5666 999999999999641 14577999999982 1111 1266678899999999999998764
No 101
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.18 E-value=0.0011 Score=44.27 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=25.3
Q ss_pred EEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEE
Q 008927 237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV 277 (548)
Q Consensus 237 ~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v 277 (548)
++++........|.|||||++|+|++.... -...+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~---~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRND---RGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT-----SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCC---CCCcCEEC
Confidence 466666666789999999999999984431 12456764
No 102
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=97.17 E-value=0.0011 Score=65.71 Aligned_cols=64 Identities=16% Similarity=0.289 Sum_probs=48.2
Q ss_pred eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc--cChHHHHHHhcCcEEEEeCCCCC
Q 008927 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI--LNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~--~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
|.+.|+. +|.++.|+++.|.++ +.|.||++|||+....+.. +......|+++||.|+.+|+||-
T Consensus 3 ~~~~~~~--~~~~l~g~~~~p~~~--------~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~ 68 (274)
T TIGR03100 3 RALTFSC--EGETLVGVLHIPGAS--------HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGM 68 (274)
T ss_pred eeEEEEc--CCcEEEEEEEcCCCC--------CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCC
Confidence 4677876 688999999999541 2367888899987655432 22346789999999999999973
No 103
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.15 E-value=0.032 Score=59.30 Aligned_cols=168 Identities=13% Similarity=0.167 Sum_probs=91.6
Q ss_pred eecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEE
Q 008927 240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (548)
Q Consensus 240 ~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~s 318 (548)
+.+..++...++||||++|++.. -.++.++.+..++.+ ..+.+.... -.........|+-|+. +++++
T Consensus 379 ~k~~~nIs~~aiSPdg~~Ia~st---------~~~~~iy~L~~~~~v-k~~~v~~~~-~~~~~a~~i~ftid~~k~~~~s 447 (691)
T KOG2048|consen 379 TKEKENISCAAISPDGNLIAIST---------VSRTKIYRLQPDPNV-KVINVDDVP-LALLDASAISFTIDKNKLFLVS 447 (691)
T ss_pred cCCccceeeeccCCCCCEEEEee---------ccceEEEEeccCcce-eEEEeccch-hhhccceeeEEEecCceEEEEe
Confidence 44555677778999999999754 123444444443332 223332221 0002456678898988 55555
Q ss_pred eCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecC
Q 008927 319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (548)
Q Consensus 319 d~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~ 398 (548)
.. . ..|..+.+++...+.+...... .-....+....++ +|++|++.. ....|+++++++++.+.|..
T Consensus 448 ~~-~--~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~Ss---dG~yiaa~~---t~g~I~v~nl~~~~~~~l~~ 514 (691)
T KOG2048|consen 448 KN-I--FSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSS---DGNYIAAIS---TRGQIFVYNLETLESHLLKV 514 (691)
T ss_pred cc-c--ceeEEEEecCcchhhhhccccc----cCCCcceeEEEcC---CCCEEEEEe---ccceEEEEEcccceeecchh
Confidence 21 2 3455555555544444321100 0011222334443 899887654 56789999999988776652
Q ss_pred -CCceeEe--ee-ecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 399 -PFTDIDN--IT-LGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 399 -~~~~~~~--~s-~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
....+.. +. .+-+++++..++ .++|.+|++..+
T Consensus 515 rln~~vTa~~~~~~~~~~lvvats~----nQv~efdi~~~~ 551 (691)
T KOG2048|consen 515 RLNIDVTAAAFSPFVRNRLVVATSN----NQVFEFDIEARN 551 (691)
T ss_pred ccCcceeeeeccccccCcEEEEecC----CeEEEEecchhh
Confidence 2222322 24 344566655443 578888885443
No 104
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.29 Score=47.70 Aligned_cols=246 Identities=15% Similarity=0.134 Sum_probs=125.0
Q ss_pred CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCe--eeEEECCEEEEEeC-CC
Q 008927 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGG--AFRIFGDTVIFSNY-KD 164 (548)
Q Consensus 89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~--~~~~~~~~i~F~~~-~~ 164 (548)
..+..+..++ |..+.- .. ++....|+-...+ ...+-+..+ .||-- .|.-+...+++.+. .+
T Consensus 15 ~~i~sl~fs~~G~~lit-ss---~dDsl~LYd~~~g--~~~~ti~sk---------kyG~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLIT-SS---EDDSLRLYDSLSG--KQVKTINSK---------KYGVDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred CceeEEEecCCCCEEEE-ec---CCCeEEEEEcCCC--ceeeEeecc---------cccccEEEEecCCceEEEccCCCC
Confidence 4566667776 555533 21 2345666655332 123333323 34332 34444556666553 35
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC
Q 008927 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (548)
Q Consensus 165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~ 244 (548)
..|-.+++.. ..-.+-.++ ...++..+..+|-++..+-.+.| ..|..+|+...+ -+-+..-..
T Consensus 80 ~tIryLsl~d--NkylRYF~G---H~~~V~sL~~sP~~d~FlS~S~D---------~tvrLWDlR~~~---cqg~l~~~~ 142 (311)
T KOG1446|consen 80 DTIRYLSLHD--NKYLRYFPG---HKKRVNSLSVSPKDDTFLSSSLD---------KTVRLWDLRVKK---CQGLLNLSG 142 (311)
T ss_pred CceEEEEeec--CceEEEcCC---CCceEEEEEecCCCCeEEecccC---------CeEEeeEecCCC---CceEEecCC
Confidence 5777777765 222233332 13467778899987654333222 357777888665 333322111
Q ss_pred ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC--CCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCC
Q 008927 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (548)
Q Consensus 245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~--~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~ 322 (548)
-.-.+++|+|-.+|- . .. ...|-++|+.. .|... ...+...+ . .......|||||+.+++++. .
T Consensus 143 -~pi~AfDp~GLifA~-~-~~------~~~IkLyD~Rs~dkgPF~-tf~i~~~~-~--~ew~~l~FS~dGK~iLlsT~-~ 208 (311)
T KOG1446|consen 143 -RPIAAFDPEGLIFAL-A-NG------SELIKLYDLRSFDKGPFT-TFSITDND-E--AEWTDLEFSPDGKSILLSTN-A 208 (311)
T ss_pred -CcceeECCCCcEEEE-e-cC------CCeEEEEEecccCCCCce-eEccCCCC-c--cceeeeEEcCCCCEEEEEeC-C
Confidence 123478999965552 2 22 23688888764 23221 11222121 1 34567899999995455544 2
Q ss_pred CeeeEEEEeccCCeeEeeccc-ccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE
Q 008927 323 GFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (548)
Q Consensus 323 g~~~Ly~~d~~~g~~~~l~~~-~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~ 394 (548)
+ .+|.+|.=+|.+..-... ......| . ...+.| |++.|+ ....+|+- +++++++|...
T Consensus 209 s--~~~~lDAf~G~~~~tfs~~~~~~~~~----~--~a~ftP---ds~Fvl-~gs~dg~i--~vw~~~tg~~v 267 (311)
T KOG1446|consen 209 S--FIYLLDAFDGTVKSTFSGYPNAGNLP----L--SATFTP---DSKFVL-SGSDDGTI--HVWNLETGKKV 267 (311)
T ss_pred C--cEEEEEccCCcEeeeEeeccCCCCcc----e--eEEECC---CCcEEE-EecCCCcE--EEEEcCCCcEe
Confidence 3 577888777775322111 1111111 1 123444 666554 44445654 45566777644
No 105
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.055 Score=52.08 Aligned_cols=226 Identities=12% Similarity=0.068 Sum_probs=119.5
Q ss_pred eeEEEC-CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927 149 AFRIFG-DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (548)
Q Consensus 149 ~~~~~~-~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id 227 (548)
.+.|.- ..|+|...-.+--+++|.++. .+++.++..+ ..-.|...+|||||.+|+.. |+.-+ ..+.-|-++|
T Consensus 74 ~~~p~~~ravafARrPGtf~~vfD~~~~-~~pv~~~s~~--~RHfyGHGvfs~dG~~LYAT-Endfd---~~rGViGvYd 146 (366)
T COG3490 74 AFHPALPRAVAFARRPGTFAMVFDPNGA-QEPVTLVSQE--GRHFYGHGVFSPDGRLLYAT-ENDFD---PNRGVIGVYD 146 (366)
T ss_pred ecCCCCcceEEEEecCCceEEEECCCCC-cCcEEEeccc--CceeecccccCCCCcEEEee-cCCCC---CCCceEEEEe
Confidence 455543 368887655567788999873 5666666653 23346777899999988776 44322 2456777778
Q ss_pred CCCCCccCcEEeeecCCce---eeeEECCCCCEEEEEEe---cCCCC-----CC--CCceEEEEEecCCCceeeeEEEcC
Q 008927 228 LNGQNIQEPKVLVSGSDFY---AFPRMDPRGERMAWIEW---HHPNM-----PW--DKAELWVGYISENGDVYKRVCVAG 294 (548)
Q Consensus 228 l~~g~~~~~~~L~~~~~~~---~~p~~SPDGk~La~~~~---~~~~~-----p~--~~~~L~v~~~~~~g~~~~~~~l~~ 294 (548)
...+ ..++.+-+.+- -...|.+||+.|+...- .+|+. .- ....|.+++.. +|.+-++..+..
T Consensus 147 ~r~~----fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a-tG~liekh~Lp~ 221 (366)
T COG3490 147 AREG----FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA-TGNLIEKHTLPA 221 (366)
T ss_pred cccc----cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc-ccchhhhccCch
Confidence 7754 34554433221 23479999999884421 23321 11 12356677755 465434444443
Q ss_pred CCCCcccCCcCceECcCCcEEEEEeC-C--CCeeeEEEEeccCCeeEeec-ccccccCCCcccccCcceeeeeecCCCCE
Q 008927 295 FDPTIVESPTEPKWSSKGELFFVTDR-K--NGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNL 370 (548)
Q Consensus 295 ~~~~~~~~~~~~~wspDG~L~~~sd~-~--~g~~~Ly~~d~~~g~~~~l~-~~~~d~~~p~w~~~~~~~~~~~~~~d~~~ 370 (548)
.... .++....-.+||+++|-+.. + ++...|.-+-..++..+.+- +++.......++ .+.+... +.+.
T Consensus 222 ~l~~--lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYi---gsiA~n~---~~gl 293 (366)
T COG3490 222 SLRQ--LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYI---GSIAANR---RDGL 293 (366)
T ss_pred hhhh--cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhh---hheeecc---cCCe
Confidence 2211 46667778899998776532 1 33344544433333333332 111000000111 0122221 2344
Q ss_pred EEEEEEeCCeEEEEEEECCCCceEee
Q 008927 371 IACSYRQNGRSYLGILDDFGHSLSLL 396 (548)
Q Consensus 371 l~~~~~~~g~~~L~~~dl~~g~~~~l 396 (548)
+. .....|.. ..++|.++|.+...
T Consensus 294 V~-lTSP~GN~-~vi~da~tG~vv~~ 317 (366)
T COG3490 294 VA-LTSPRGNR-AVIWDAATGAVVSE 317 (366)
T ss_pred EE-EecCCCCe-EEEEEcCCCcEEec
Confidence 44 33444433 45779999987644
No 106
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=97.10 E-value=0.0013 Score=65.10 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=49.2
Q ss_pred eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHH-hcCcEEEEeCC--CCCC
Q 008927 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT-SRGWAFVDVNY--GGST 536 (548)
Q Consensus 462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~a-srGyaVl~~Ny--RGSt 536 (548)
+..+|.+..-+.++.-.+|.|.+ +. .+++|+|+++||.+.......+....+.|+ ..||+|+.||. ||+.
T Consensus 14 ~~~~~~s~~~~~~~~~~v~~P~~--~~---~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~ 86 (275)
T TIGR02821 14 GFYRHKSETCGVPMTFGVFLPPQ--AA---AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTG 86 (275)
T ss_pred EEEEEeccccCCceEEEEEcCCC--cc---CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCC
Confidence 45666664356778899999964 32 356899999999986655443333455565 57999999997 7653
No 107
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.06 E-value=0.61 Score=50.40 Aligned_cols=218 Identities=8% Similarity=-0.036 Sum_probs=117.3
Q ss_pred ceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (548)
Q Consensus 191 ~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~ 270 (548)
...+.+..|||++.+++.....+ ..+..|-+.||.+|+ .. ...-.+......|.+|++.|.|+..+...
T Consensus 129 ~~Lg~~~~s~D~~~la~s~D~~G----~e~y~lr~kdL~tg~---~~-~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~--- 197 (682)
T COG1770 129 FSLGAASISPDHNLLAYSVDVLG----DEQYTLRFKDLATGE---EL-PDEITNTSGSFAWAADGKTLFYTRLDENH--- 197 (682)
T ss_pred eeeeeeeeCCCCceEEEEEeccc----ccEEEEEEEeccccc---cc-chhhcccccceEEecCCCeEEEEEEcCCC---
Confidence 45678889999999988644332 246788899999997 21 11112223456899999999999854332
Q ss_pred CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCC--eeEeecccccccC
Q 008927 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN--EVLAIYSLDAEFS 348 (548)
Q Consensus 271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g--~~~~l~~~~~d~~ 348 (548)
.-.+||...+.+... .-+++..+... .......=+.+.+.++++-.+....++++++.+.. +.+.+.+.+.++.
T Consensus 198 rp~kv~~h~~gt~~~--~d~lvyeE~d~--~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~e 273 (682)
T COG1770 198 RPDKVWRHRLGTPGS--SDELVYEEKDD--RFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVE 273 (682)
T ss_pred CcceEEEEecCCCCC--cceEEEEcCCC--cEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcE
Confidence 235788877764222 22333332201 11122222444453443221123345666665443 3444544321111
Q ss_pred CCcccccCcceeeeeecCCCCEEEEEEEeCC-eEEEEEEEC--CCCceEeecC--CCceeEeeeecCCEEEEEEecCCCC
Q 008927 349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDD--FGHSLSLLDI--PFTDIDNITLGNDCLFVEGASGVEP 423 (548)
Q Consensus 349 ~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g-~~~L~~~dl--~~g~~~~l~~--~~~~~~~~s~d~~~l~~~~ss~~~p 423 (548)
|... ..++.+|+..+.+| ...|+.... ....++.+.. +..-+.++..-.++|++... ....
T Consensus 274 ----------Y~~e---h~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR-~~gl 339 (682)
T COG1770 274 ----------YSVE---HGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLER-QEGL 339 (682)
T ss_pred ----------Eeee---ecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEec-ccCC
Confidence 2221 14567777777666 556766554 1123443332 22235555555666665554 3556
Q ss_pred CeEEEEEcCCCcee
Q 008927 424 SSVAKVTLDDHKLK 437 (548)
Q Consensus 424 ~~l~~~d~~~~~~~ 437 (548)
+.|++.+.++++..
T Consensus 340 p~v~v~~~~~~~~~ 353 (682)
T COG1770 340 PRVVVRDRKTGEER 353 (682)
T ss_pred ceEEEEecCCCcee
Confidence 78888888776644
No 108
>PLN02442 S-formylglutathione hydrolase
Probab=97.05 E-value=0.0014 Score=65.25 Aligned_cols=68 Identities=18% Similarity=0.111 Sum_probs=47.3
Q ss_pred CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChH-HHHHHhcCcEEEEeCCC
Q 008927 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLS-IQYWTSRGWAFVDVNYG 533 (548)
Q Consensus 461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~-~Q~~asrGyaVl~~NyR 533 (548)
.+.+++.|..-|..+.-.+|.|.+ . +++++|+|+++||++........... .++++.+||+|+.||..
T Consensus 18 ~~~~~~~s~~l~~~~~~~vy~P~~---~--~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~ 86 (283)
T PLN02442 18 NRRYKHFSSTLGCSMTFSVYFPPA---S--DSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTS 86 (283)
T ss_pred EEEEEEeccccCCceEEEEEcCCc---c--cCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCC
Confidence 355666664257789999999952 1 25789999999998865543322222 35567789999999964
No 109
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.04 E-value=0.41 Score=47.61 Aligned_cols=186 Identities=10% Similarity=0.065 Sum_probs=100.1
Q ss_pred CCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCc
Q 008927 112 AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLV 191 (548)
Q Consensus 112 ~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~ 191 (548)
+.+--||....+ ..+-+||...-+|-.. .|+-||. ++-+-+-++.|.+...+.+ ++...|... ..
T Consensus 85 DD~AflW~~~~g--e~~~eltgHKDSVt~~-------~Fshdgt-lLATGdmsG~v~v~~~stg-~~~~~~~~e----~~ 149 (399)
T KOG0296|consen 85 DDLAFLWDISTG--EFAGELTGHKDSVTCC-------SFSHDGT-LLATGDMSGKVLVFKVSTG-GEQWKLDQE----VE 149 (399)
T ss_pred CceEEEEEccCC--cceeEecCCCCceEEE-------EEccCce-EEEecCCCccEEEEEcccC-ceEEEeecc----cC
Confidence 345566766443 3456666543333221 3554543 3334445566666666652 333444311 12
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc-eeeeEECCCCCEEEEEEecCCCCCC
Q 008927 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPW 270 (548)
Q Consensus 192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~-~~~p~~SPDGk~La~~~~~~~~~p~ 270 (548)
.+.-+.|.|-+..+++-+++ ..||.+.+..+. .-++..|... ...-.+.||||+|+-.. +
T Consensus 150 dieWl~WHp~a~illAG~~D---------GsvWmw~ip~~~---~~kv~~Gh~~~ct~G~f~pdGKr~~tgy-~------ 210 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLAGSTD---------GSVWMWQIPSQA---LCKVMSGHNSPCTCGEFIPDGKRILTGY-D------ 210 (399)
T ss_pred ceEEEEecccccEEEeecCC---------CcEEEEECCCcc---eeeEecCCCCCcccccccCCCceEEEEe-c------
Confidence 34557899988877765433 468888888855 5566655433 44557999999997443 2
Q ss_pred CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec
Q 008927 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (548)
Q Consensus 271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~ 341 (548)
...|.+.++.. |. ....+.+.. . ........+.+|.+++..++ .+ ..+.++..+|++....
T Consensus 211 -dgti~~Wn~kt-g~--p~~~~~~~e-~--~~~~~~~~~~~~~~~~~g~~-e~--~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 211 -DGTIIVWNPKT-GQ--PLHKITQAE-G--LELPCISLNLAGSTLTKGNS-EG--VACGVNNGSGKVVNCN 271 (399)
T ss_pred -CceEEEEecCC-Cc--eeEEecccc-c--CcCCccccccccceeEeccC-Cc--cEEEEccccceEEEec
Confidence 34677778774 53 222233221 1 12223344556665555554 33 3445555566655443
No 110
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.02 E-value=0.041 Score=54.75 Aligned_cols=147 Identities=15% Similarity=0.178 Sum_probs=84.2
Q ss_pred eeEEECCEEEEEeCCCC--eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927 149 AFRIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~--~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i 226 (548)
+|+|+|..|+=-+ .|. +|| |+++ ..| +..-++ ..--+.-.+|||||++|+--+.+ +.|-.+
T Consensus 122 ~fsp~g~~l~tGs-GD~TvR~W--D~~T--eTp--~~t~Kg-H~~WVlcvawsPDgk~iASG~~d---------g~I~lw 184 (480)
T KOG0271|consen 122 QFSPTGSRLVTGS-GDTTVRLW--DLDT--ETP--LFTCKG-HKNWVLCVAWSPDGKKIASGSKD---------GSIRLW 184 (480)
T ss_pred EecCCCceEEecC-CCceEEee--ccCC--CCc--ceeecC-CccEEEEEEECCCcchhhccccC---------CeEEEe
Confidence 5778777776543 333 677 4443 222 211110 11234567899999998775433 478889
Q ss_pred ECCCCCccCcEEeeecCCceeeeEE-----CCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc
Q 008927 227 ALNGQNIQEPKVLVSGSDFYAFPRM-----DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (548)
Q Consensus 227 dl~~g~~~~~~~L~~~~~~~~~p~~-----SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~ 301 (548)
|..+|+. .-+.|......+...+| .|++++||=.+ . ...+.+-|+.. |. ..+++.+.. .
T Consensus 185 dpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~r~las~s--k------Dg~vrIWd~~~-~~--~~~~lsgHT----~ 248 (480)
T KOG0271|consen 185 DPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPCRRLASSS--K------DGSVRIWDTKL-GT--CVRTLSGHT----A 248 (480)
T ss_pred cCCCCCc-ccccccCcccceeEEeecccccCCCccceeccc--C------CCCEEEEEccC-ce--EEEEeccCc----c
Confidence 9988861 12334433334444444 66777776222 1 24577778763 43 467777765 6
Q ss_pred CCcCceECcCCcEEEEEeCCCCeeeEEEE
Q 008927 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKW 330 (548)
Q Consensus 302 ~~~~~~wspDG~L~~~sd~~~g~~~Ly~~ 330 (548)
++.-..|--+| ++|.... +..-.+|+.
T Consensus 249 ~VTCvrwGG~g-liySgS~-DrtIkvw~a 275 (480)
T KOG0271|consen 249 SVTCVRWGGEG-LIYSGSQ-DRTIKVWRA 275 (480)
T ss_pred ceEEEEEcCCc-eEEecCC-CceEEEEEc
Confidence 78888997555 7776544 444444443
No 111
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.00 E-value=0.072 Score=51.00 Aligned_cols=197 Identities=15% Similarity=0.148 Sum_probs=109.6
Q ss_pred CCeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927 146 GGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (548)
Q Consensus 146 gg~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~ 225 (548)
.+...++|| ..+++...|+.|..-|+.+ +++++...+. .......++|||.+.|+--+.| ..|-+
T Consensus 67 ~dv~~s~dg-~~alS~swD~~lrlWDl~~--g~~t~~f~GH---~~dVlsva~s~dn~qivSGSrD---------kTikl 131 (315)
T KOG0279|consen 67 SDVVLSSDG-NFALSASWDGTLRLWDLAT--GESTRRFVGH---TKDVLSVAFSTDNRQIVSGSRD---------KTIKL 131 (315)
T ss_pred cceEEccCC-ceEEeccccceEEEEEecC--CcEEEEEEec---CCceEEEEecCCCceeecCCCc---------ceeee
Confidence 333444444 3555555566566668887 6776554431 2346677899999987654322 35777
Q ss_pred EECCCCCccCcEEeeec--CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCC
Q 008927 226 IALNGQNIQEPKVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (548)
Q Consensus 226 idl~~g~~~~~~~L~~~--~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~ 303 (548)
+|.-++- .-.+.++ .+++...+|||.-.....++.. |+ ..+-+-|++. -++ .....+.. ..+
T Consensus 132 wnt~g~c---k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s-----~D-ktvKvWnl~~-~~l--~~~~~gh~----~~v 195 (315)
T KOG0279|consen 132 WNTLGVC---KYTIHEDSHREWVSCVRFSPNESNPIIVSAS-----WD-KTVKVWNLRN-CQL--RTTFIGHS----GYV 195 (315)
T ss_pred eeecccE---EEEEecCCCcCcEEEEEEcCCCCCcEEEEcc-----CC-ceEEEEccCC-cch--hhcccccc----ccE
Confidence 7877764 3333333 5778899999986444444422 23 2355567653 221 22333433 567
Q ss_pred cCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEE
Q 008927 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 383 (548)
Q Consensus 304 ~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L 383 (548)
.....||||.|.....+ +| .++++|++.++- +...++ .. -.....|+| .+..++.+...+ |
T Consensus 196 ~t~~vSpDGslcasGgk-dg--~~~LwdL~~~k~--lysl~a--~~-----~v~sl~fsp----nrywL~~at~~s---I 256 (315)
T KOG0279|consen 196 NTVTVSPDGSLCASGGK-DG--EAMLWDLNEGKN--LYSLEA--FD-----IVNSLCFSP----NRYWLCAATATS---I 256 (315)
T ss_pred EEEEECCCCCEEecCCC-Cc--eEEEEEccCCce--eEeccC--CC-----eEeeEEecC----CceeEeeccCCc---e
Confidence 77899999996655444 44 566667655543 321110 00 112345653 444444443322 6
Q ss_pred EEEECCCCc
Q 008927 384 GILDDFGHS 392 (548)
Q Consensus 384 ~~~dl~~g~ 392 (548)
.+.|++++.
T Consensus 257 kIwdl~~~~ 265 (315)
T KOG0279|consen 257 KIWDLESKA 265 (315)
T ss_pred EEEeccchh
Confidence 677887775
No 112
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.98 E-value=0.21 Score=48.21 Aligned_cols=215 Identities=20% Similarity=0.164 Sum_probs=110.3
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee--cCCceeeeEECCCCCEEEEEEecCCCCC
Q 008927 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (548)
Q Consensus 192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~--~~~~~~~p~~SPDGk~La~~~~~~~~~p 269 (548)
|-.+..++|--.+-+++.... -..-+++|..+.+. +..+.. +..||..-.|||||++|+-...+.. +
T Consensus 69 R~Hgi~~~p~~~ravafARrP-------Gtf~~vfD~~~~~~--pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd--~ 137 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRP-------GTFAMVFDPNGAQE--PVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD--P 137 (366)
T ss_pred ccCCeecCCCCcceEEEEecC-------CceEEEECCCCCcC--cEEEecccCceeecccccCCCCcEEEeecCCCC--C
Confidence 556778888765555544332 24678889988762 444443 3447888899999997754432221 1
Q ss_pred CCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeC------CCCe---------eeEEEEeccC
Q 008927 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR------KNGF---------WNLHKWIESN 334 (548)
Q Consensus 270 ~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~------~~g~---------~~Ly~~d~~~ 334 (548)
...-|-++|... + +...-.+.... ....+..|.+||+++.+.+- .-|+ ..|.++|..+
T Consensus 138 -~rGViGvYd~r~-~-fqrvgE~~t~G----iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at 210 (366)
T COG3490 138 -NRGVIGVYDARE-G-FQRVGEFSTHG----IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT 210 (366)
T ss_pred -CCceEEEEeccc-c-cceecccccCC----cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence 245677888762 2 11111122211 34578899999995555432 1122 2356666556
Q ss_pred Cee-Eeec-ccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC----eEEEEEEECCCCceEeecCCCc-------
Q 008927 335 NEV-LAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG----RSYLGILDDFGHSLSLLDIPFT------- 401 (548)
Q Consensus 335 g~~-~~l~-~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g----~~~L~~~dl~~g~~~~l~~~~~------- 401 (548)
|++ ++.+ +. + .-.+.......- ++++|+|...-.| ..-|.-+-..++.++.|..+..
T Consensus 211 G~liekh~Lp~--~----l~~lSiRHld~g----~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~an 280 (366)
T COG3490 211 GNLIEKHTLPA--S----LRQLSIRHLDIG----RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFAN 280 (366)
T ss_pred cchhhhccCch--h----hhhcceeeeeeC----CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHh
Confidence 653 2222 11 0 111222223332 4566776654322 2334333344555666654421
Q ss_pred eeEeeeec-CCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 402 DIDNITLG-NDCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 402 ~~~~~s~d-~~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
-+.++... ...++.+. ++ .-+....+|.++|.+
T Consensus 281 YigsiA~n~~~glV~lT-SP-~GN~~vi~da~tG~v 314 (366)
T COG3490 281 YIGSIAANRRDGLVALT-SP-RGNRAVIWDAATGAV 314 (366)
T ss_pred hhhheeecccCCeEEEe-cC-CCCeEEEEEcCCCcE
Confidence 13333322 23333333 22 235667889998874
No 113
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=96.95 E-value=0.0016 Score=63.95 Aligned_cols=65 Identities=12% Similarity=0.250 Sum_probs=45.4
Q ss_pred eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc--ccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE--ARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~--~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
|.|.+++. +|. ++++++.|.+ .++.|+||++||-.... +...|......|+.+||.|+.+||||-
T Consensus 1 ~~~~l~~~-~g~-~~~~~~~p~~-------~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~ 67 (266)
T TIGR03101 1 HPFFLDAP-HGF-RFCLYHPPVA-------VGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGC 67 (266)
T ss_pred CCEEecCC-CCc-EEEEEecCCC-------CCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 34667775 554 7899998853 23469999999954322 122334456789999999999999993
No 114
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.94 E-value=0.018 Score=56.89 Aligned_cols=112 Identities=16% Similarity=0.166 Sum_probs=69.6
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee-ecCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (548)
Q Consensus 192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~-~~~~~~~~p~~SPDGk~La~~~~~~~~~p~ 270 (548)
-+..+.|.+||..++-.+-+ ...|.++|+++|. ...|. .+.+.++...|||||.+|.-..-+.
T Consensus 197 pVtsmqwn~dgt~l~tAS~g--------sssi~iWdpdtg~---~~pL~~~glgg~slLkwSPdgd~lfaAt~da----- 260 (445)
T KOG2139|consen 197 PVTSMQWNEDGTILVTASFG--------SSSIMIWDPDTGQ---KIPLIPKGLGGFSLLKWSPDGDVLFAATCDA----- 260 (445)
T ss_pred eeeEEEEcCCCCEEeecccC--------cceEEEEcCCCCC---cccccccCCCceeeEEEcCCCCEEEEecccc-----
Confidence 35578899999877653222 2578888999987 55555 5555677889999999885333111
Q ss_pred CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEec
Q 008927 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 332 (548)
Q Consensus 271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~ 332 (548)
...||--. ..++..+.+.+. ..++...|+|+|+ |+|... |...||.+..
T Consensus 261 -vfrlw~e~----q~wt~erw~lgs-----grvqtacWspcGsfLLf~~s---gsp~lysl~f 310 (445)
T KOG2139|consen 261 -VFRLWQEN----QSWTKERWILGS-----GRVQTACWSPCGSFLLFACS---GSPRLYSLTF 310 (445)
T ss_pred -eeeeehhc----ccceecceeccC-----CceeeeeecCCCCEEEEEEc---CCceEEEEee
Confidence 23444111 111112333332 4678889999999 777753 3356777654
No 115
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=96.89 E-value=0.0022 Score=65.88 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=47.3
Q ss_pred eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
+...+... ||.++++..+.|.+ ++..|+||++||...... ..|....+.|+++||.|+.+|+||-
T Consensus 62 ~~~~~~~~-~g~~l~~~~~~p~~-------~~~~~~iv~lHG~~~~~~-~~~~~~~~~l~~~g~~v~~~D~~G~ 126 (349)
T PLN02385 62 EESYEVNS-RGVEIFSKSWLPEN-------SRPKAAVCFCHGYGDTCT-FFFEGIARKIASSGYGVFAMDYPGF 126 (349)
T ss_pred eeeeEEcC-CCCEEEEEEEecCC-------CCCCeEEEEECCCCCccc-hHHHHHHHHHHhCCCEEEEecCCCC
Confidence 33445555 89999999998853 245599999999754321 1234556789999999999999984
No 116
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.15 Score=53.39 Aligned_cols=121 Identities=19% Similarity=0.288 Sum_probs=69.9
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC
Q 008927 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (548)
Q Consensus 165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~ 244 (548)
+.||.++.+|. .-..+|... .-+.+..|+|+|+..+.+-.-.. ..+-..|+++.- +-.+-+++.
T Consensus 251 q~Lyll~t~g~-s~~V~L~k~-----GPVhdv~W~~s~~EF~VvyGfMP-------Akvtifnlr~~~---v~df~egpR 314 (566)
T KOG2315|consen 251 QTLYLLATQGE-SVSVPLLKE-----GPVHDVTWSPSGREFAVVYGFMP-------AKVTIFNLRGKP---VFDFPEGPR 314 (566)
T ss_pred ceEEEEEecCc-eEEEecCCC-----CCceEEEECCCCCEEEEEEeccc-------ceEEEEcCCCCE---eEeCCCCCc
Confidence 58999999852 223455432 23678899999988665533221 245556776654 333444443
Q ss_pred ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEE
Q 008927 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV 317 (548)
Q Consensus 245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~ 317 (548)
. ...|||-|+.|++.. ..+. ..++-+.|+.. - .++.... - ....-..|+|||+.+++
T Consensus 315 N--~~~fnp~g~ii~lAG--FGNL---~G~mEvwDv~n-~-----K~i~~~~-a--~~tt~~eW~PdGe~flT 371 (566)
T KOG2315|consen 315 N--TAFFNPHGNIILLAG--FGNL---PGDMEVWDVPN-R-----KLIAKFK-A--ANTTVFEWSPDGEYFLT 371 (566)
T ss_pred c--ceEECCCCCEEEEee--cCCC---CCceEEEeccc-h-----hhccccc-c--CCceEEEEcCCCcEEEE
Confidence 2 346999999888654 3332 24455667763 2 2232221 0 22345789999994444
No 117
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=96.81 E-value=0.002 Score=42.90 Aligned_cols=28 Identities=29% Similarity=0.786 Sum_probs=22.6
Q ss_pred cCCcCceECcCCc-EEEEEeCCC--CeeeEEE
Q 008927 301 ESPTEPKWSSKGE-LFFVTDRKN--GFWNLHK 329 (548)
Q Consensus 301 ~~~~~~~wspDG~-L~~~sd~~~--g~~~Ly~ 329 (548)
.....|.|||||+ |+|.+++ . |..+||+
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~-~~~g~~diy~ 39 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNR-NDRGSFDIYV 39 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEEC-T--SSEEEEE
T ss_pred ccccCEEEecCCCEEEEEecC-CCCCCcCEEC
Confidence 3457899999999 9999998 6 8888885
No 118
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.80 E-value=0.019 Score=57.11 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=66.9
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCC
Q 008927 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (548)
Q Consensus 193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~ 272 (548)
+....|||||++|+--+.| +.+-.+|+.+... ...+.....++....|||||++||=-+ ..
T Consensus 118 Vl~~~fsp~g~~l~tGsGD---------~TvR~WD~~TeTp--~~t~KgH~~WVlcvawsPDgk~iASG~--------~d 178 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGD---------TTVRLWDLDTETP--LFTCKGHKNWVLCVAWSPDGKKIASGS--------KD 178 (480)
T ss_pred EEEEEecCCCceEEecCCC---------ceEEeeccCCCCc--ceeecCCccEEEEEEECCCcchhhccc--------cC
Confidence 3456799999988764322 2344556666541 233344445677789999999998322 24
Q ss_pred ceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC-----cCCcEEEEEeCCCCeeeEEEEeccCCee
Q 008927 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS-----SKGELFFVTDRKNGFWNLHKWIESNNEV 337 (548)
Q Consensus 273 ~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws-----pDG~L~~~sd~~~g~~~Ly~~d~~~g~~ 337 (548)
.+|.+.|.+.++.+ -+.+.+.. -.+..+.|- |..+++..+.. +|.-. .+|...+..
T Consensus 179 g~I~lwdpktg~~~--g~~l~gH~----K~It~Lawep~hl~p~~r~las~sk-Dg~vr--IWd~~~~~~ 239 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQI--GRALRGHK----KWITALAWEPLHLVPPCRRLASSSK-DGSVR--IWDTKLGTC 239 (480)
T ss_pred CeEEEecCCCCCcc--cccccCcc----cceeEEeecccccCCCccceecccC-CCCEE--EEEccCceE
Confidence 57888887754332 23445543 345666664 45554444444 55444 445544543
No 119
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=96.78 E-value=0.18 Score=47.62 Aligned_cols=139 Identities=15% Similarity=0.092 Sum_probs=83.0
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (548)
Q Consensus 164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~ 243 (548)
.++|-++|+.. +.+.++...+. ....+....|--||++++--.|| ..+-++|+..-. .+++.+..
T Consensus 60 ~qhvRlyD~~S--~np~Pv~t~e~-h~kNVtaVgF~~dgrWMyTgseD---------gt~kIWdlR~~~---~qR~~~~~ 124 (311)
T KOG0315|consen 60 NQHVRLYDLNS--NNPNPVATFEG-HTKNVTAVGFQCDGRWMYTGSED---------GTVKIWDLRSLS---CQRNYQHN 124 (311)
T ss_pred CCeeEEEEccC--CCCCceeEEec-cCCceEEEEEeecCeEEEecCCC---------ceEEEEeccCcc---cchhccCC
Confidence 45677778776 55555543321 12345666788899997654443 245555776654 45555544
Q ss_pred CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCC
Q 008927 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (548)
Q Consensus 244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~ 322 (548)
.-+....+.|+-..|. +. + ....|++-|+..+-- ...++... + .++..+.-.|||+ +....++
T Consensus 125 spVn~vvlhpnQteLi-s~-d------qsg~irvWDl~~~~c--~~~liPe~--~--~~i~sl~v~~dgsml~a~nnk-- 188 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELI-SG-D------QSGNIRVWDLGENSC--THELIPED--D--TSIQSLTVMPDGSMLAAANNK-- 188 (311)
T ss_pred CCcceEEecCCcceEE-ee-c------CCCcEEEEEccCCcc--ccccCCCC--C--cceeeEEEcCCCcEEEEecCC--
Confidence 4455567788766554 33 2 245789989864311 12233333 3 6788899999999 7666666
Q ss_pred CeeeEEEEeccCC
Q 008927 323 GFWNLHKWIESNN 335 (548)
Q Consensus 323 g~~~Ly~~d~~~g 335 (548)
| ++|.+++-++
T Consensus 189 G--~cyvW~l~~~ 199 (311)
T KOG0315|consen 189 G--NCYVWRLLNH 199 (311)
T ss_pred c--cEEEEEccCC
Confidence 3 5666665444
No 120
>PLN00021 chlorophyllase
Probab=96.78 E-value=0.0024 Score=64.30 Aligned_cols=55 Identities=18% Similarity=0.122 Sum_probs=43.0
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 536 (548)
Q Consensus 473 ~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt 536 (548)
..+.+++|.|.+ ++++|+||++||+... ...|....+.|+++||.|+.+|++|..
T Consensus 37 ~~~p~~v~~P~~-------~g~~PvVv~lHG~~~~--~~~y~~l~~~Las~G~~VvapD~~g~~ 91 (313)
T PLN00021 37 PPKPLLVATPSE-------AGTYPVLLFLHGYLLY--NSFYSQLLQHIASHGFIVVAPQLYTLA 91 (313)
T ss_pred CCceEEEEeCCC-------CCCCCEEEEECCCCCC--cccHHHHHHHHHhCCCEEEEecCCCcC
Confidence 458999999953 4578999999998643 233555667899999999999988743
No 121
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=96.75 E-value=0.019 Score=60.47 Aligned_cols=158 Identities=14% Similarity=0.109 Sum_probs=82.5
Q ss_pred eeEE-ECCEEEEEeCCC-CeEEEEeCCCCCCCceecCCCCC--CCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 008927 149 AFRI-FGDTVIFSNYKD-QRLYKHSIDSKDSSPLPITPDYG--EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (548)
Q Consensus 149 ~~~~-~~~~i~F~~~~~-~~Ly~~~~~~~~~~~~~lT~~~~--~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~ 224 (548)
.|-| |..+|+..-+.. =+||++...| ...-..|+... .....+..+.|.|=..-++.++. ....|-
T Consensus 634 ~WdPFD~~rLAVa~ddg~i~lWr~~a~g--l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as--------yd~Ti~ 703 (1012)
T KOG1445|consen 634 HWDPFDDERLAVATDDGQINLWRLTANG--LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS--------YDSTIE 703 (1012)
T ss_pred ccCCCChHHeeecccCceEEEEEeccCC--CCcccCCcceeeecccceEEEEEecchhhhHhhhhh--------ccceee
Confidence 3444 344565543222 2789998875 32222222210 00112334445553222222211 124677
Q ss_pred EEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCC-CCCcccCC
Q 008927 225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF-DPTIVESP 303 (548)
Q Consensus 225 ~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~-~~~~~~~~ 303 (548)
++|+.+++. .-.|....+.+...+|||||++||-+.. ...|.++.... ++ ..+-.+. ..+ ..-
T Consensus 704 lWDl~~~~~--~~~l~gHtdqIf~~AWSpdGr~~AtVcK--------Dg~~rVy~Prs-~e---~pv~Eg~gpvg--tRg 767 (1012)
T KOG1445|consen 704 LWDLANAKL--YSRLVGHTDQIFGIAWSPDGRRIATVCK--------DGTLRVYEPRS-RE---QPVYEGKGPVG--TRG 767 (1012)
T ss_pred eeehhhhhh--hheeccCcCceeEEEECCCCcceeeeec--------CceEEEeCCCC-CC---CccccCCCCcc--Ccc
Confidence 889988762 3355555667778899999999997763 34688887653 32 1111111 101 223
Q ss_pred cCceECcCCc-EEEE-EeCCCCeeeEEEEecc
Q 008927 304 TEPKWSSKGE-LFFV-TDRKNGFWNLHKWIES 333 (548)
Q Consensus 304 ~~~~wspDG~-L~~~-sd~~~g~~~Ly~~d~~ 333 (548)
....|.=||+ ++++ -|. ....+|-.|+.+
T Consensus 768 ARi~wacdgr~viv~Gfdk-~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 768 ARILWACDGRIVIVVGFDK-SSERQVQMYDAQ 798 (1012)
T ss_pred eeEEEEecCcEEEEecccc-cchhhhhhhhhh
Confidence 4678999999 4444 243 333456566543
No 122
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.73 E-value=0.013 Score=65.27 Aligned_cols=142 Identities=15% Similarity=0.076 Sum_probs=80.9
Q ss_pred eeEEECCEEEEEeCCC-CeEEEEeC------CCCCCCce---------ecCCCCCCCCceecceeeCCCCCEEEEEEecc
Q 008927 149 AFRIFGDTVIFSNYKD-QRLYKHSI------DSKDSSPL---------PITPDYGEPLVSYADGIFDPRFNRYVTVREDR 212 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~-~~Ly~~~~------~~~~~~~~---------~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~ 212 (548)
.|++||.++++-++.. =.||.... -|..|... .|-. ....+.|..||||+..++-+.-+
T Consensus 76 R~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~----H~~DV~Dv~Wsp~~~~lvS~s~D- 150 (942)
T KOG0973|consen 76 RFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG----HDSDVLDVNWSPDDSLLVSVSLD- 150 (942)
T ss_pred EECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec----CCCccceeccCCCccEEEEeccc-
Confidence 5888999888876332 14577662 11001111 1111 13457789999999887776433
Q ss_pred CCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE
Q 008927 213 RQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV 292 (548)
Q Consensus 213 ~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l 292 (548)
+.|.++|..+.+. .+++......+-...|.|=||++|-.+ + ...|-+.+...-|- ...+
T Consensus 151 --------nsViiwn~~tF~~--~~vl~~H~s~VKGvs~DP~Gky~ASqs-d-------Drtikvwrt~dw~i---~k~I 209 (942)
T KOG0973|consen 151 --------NSVIIWNAKTFEL--LKVLRGHQSLVKGVSWDPIGKYFASQS-D-------DRTLKVWRTSDWGI---EKSI 209 (942)
T ss_pred --------ceEEEEcccccee--eeeeecccccccceEECCccCeeeeec-C-------CceEEEEEccccee---eEee
Confidence 5788889888762 344444445566779999999998444 2 12344444332221 2223
Q ss_pred cCCCC--CcccCCcCceECcCCcEEE
Q 008927 293 AGFDP--TIVESPTEPKWSSKGELFF 316 (548)
Q Consensus 293 ~~~~~--~~~~~~~~~~wspDG~L~~ 316 (548)
++... .....+..+.|||||+++.
T Consensus 210 t~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 210 TKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred ccchhhCCCcceeeecccCCCcCeec
Confidence 22110 0002356789999999433
No 123
>PRK10985 putative hydrolase; Provisional
Probab=96.73 E-value=0.003 Score=64.23 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=44.2
Q ss_pred EeeccCCCeEEEE-EEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCC
Q 008927 465 EFPTEVPGQKAYA-YYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGL 538 (548)
Q Consensus 465 ~~~s~~dG~~i~g-~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGy 538 (548)
.++.. ||..+.- |...|.. ....|+||++||.+...........++.|+++||.|+.+|+||..|-
T Consensus 35 ~~~~~-dg~~~~l~w~~~~~~-------~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~ 101 (324)
T PRK10985 35 RLELP-DGDFVDLAWSEDPAQ-------ARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGE 101 (324)
T ss_pred EEECC-CCCEEEEecCCCCcc-------CCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCC
Confidence 35566 8876643 4333321 23459999999997654432233456789999999999999996543
No 124
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=96.72 E-value=0.003 Score=49.60 Aligned_cols=53 Identities=21% Similarity=0.355 Sum_probs=42.1
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534 (548)
Q Consensus 472 G~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG 534 (548)
|.+|+...+.|.+ +...+|+.+||--.-. ..|...++.|+++||+|+..|.||
T Consensus 1 G~~L~~~~w~p~~--------~~k~~v~i~HG~~eh~--~ry~~~a~~L~~~G~~V~~~D~rG 53 (79)
T PF12146_consen 1 GTKLFYRRWKPEN--------PPKAVVVIVHGFGEHS--GRYAHLAEFLAEQGYAVFAYDHRG 53 (79)
T ss_pred CcEEEEEEecCCC--------CCCEEEEEeCCcHHHH--HHHHHHHHHHHhCCCEEEEECCCc
Confidence 5678888898853 2459999999973222 246678899999999999999999
No 125
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.72 E-value=0.56 Score=44.78 Aligned_cols=184 Identities=15% Similarity=0.133 Sum_probs=89.3
Q ss_pred eEEEEEECCCCCccCcEEeeecCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeE-EEcCCCCC
Q 008927 221 TEIVAIALNGQNIQEPKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV-CVAGFDPT 298 (548)
Q Consensus 221 ~~l~~idl~~g~~~~~~~L~~~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~-~l~~~~~~ 298 (548)
..|+.+|..+|+ ..--....+ ....|. .++..|++.. ....|+.+|.. +|++. .+ .....+..
T Consensus 46 ~~l~~~d~~tG~---~~W~~~~~~~~~~~~~--~~~~~v~v~~--------~~~~l~~~d~~-tG~~~-W~~~~~~~~~~ 110 (238)
T PF13360_consen 46 GNLYALDAKTGK---VLWRFDLPGPISGAPV--VDGGRVYVGT--------SDGSLYALDAK-TGKVL-WSIYLTSSPPA 110 (238)
T ss_dssp SEEEEEETTTSE---EEEEEECSSCGGSGEE--EETTEEEEEE--------TTSEEEEEETT-TSCEE-EEEEE-SSCTC
T ss_pred CEEEEEECCCCC---EEEEeeccccccceee--eccccccccc--------ceeeeEecccC-Cccee-eeecccccccc
Confidence 589999999997 332222222 223342 2455565444 12479999977 46521 22 12221100
Q ss_pred cccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeeccccc-ccCCCcccccCcceeeeeecCCCCEEEEEEE
Q 008927 299 IVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA-EFSRPLWVFGINSYEIIQSHGEKNLIACSYR 376 (548)
Q Consensus 299 ~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~-d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~ 376 (548)
..........+|+ +++.... ..|+.+|+++|+..--.+... ....+........-.+.- .++.+++. .
T Consensus 111 --~~~~~~~~~~~~~~~~~~~~~----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~-~ 180 (238)
T PF13360_consen 111 --GVRSSSSPAVDGDRLYVGTSS----GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI---SDGRVYVS-S 180 (238)
T ss_dssp --STB--SEEEEETTEEEEEETC----SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC---CTTEEEEE-C
T ss_pred --ccccccCceEecCEEEEEecc----CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE---ECCEEEEE-c
Confidence 1112233333466 5444432 379999999998632221100 000000000000011111 33455543 3
Q ss_pred eCCeEEEEEEECCCCceEeecCCCceeEe-eeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 377 QNGRSYLGILDDFGHSLSLLDIPFTDIDN-ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 377 ~~g~~~L~~~dl~~g~~~~l~~~~~~~~~-~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
.++. ++.+|+++|+..- ..+...... ...+++.+++.. . ...|+.+|+++|+.
T Consensus 181 ~~g~--~~~~d~~tg~~~w-~~~~~~~~~~~~~~~~~l~~~~-~---~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 181 GDGR--VVAVDLATGEKLW-SKPISGIYSLPSVDGGTLYVTS-S---DGRLYALDLKTGKV 234 (238)
T ss_dssp CTSS--EEEEETTTTEEEE-EECSS-ECECEECCCTEEEEEE-T---TTEEEEEETTTTEE
T ss_pred CCCe--EEEEECCCCCEEE-EecCCCccCCceeeCCEEEEEe-C---CCEEEEEECCCCCE
Confidence 3343 6667999997442 222333333 356777776655 2 37999999999873
No 126
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=96.71 E-value=1.4 Score=48.95 Aligned_cols=192 Identities=15% Similarity=0.092 Sum_probs=99.3
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC
Q 008927 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (548)
Q Consensus 165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~ 244 (548)
.++|+++..+ ....+... ...+..+.+++++..++.+.......+ .....+.....++. ...++.+..
T Consensus 149 ~~l~~~d~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~ 216 (620)
T COG1506 149 SDLYVVDIES---KLIKLGLG----NLDVVSFATDGDGRLVASIRLDDDADP--WVTNLYVLIEGNGE---LESLTPGEG 216 (620)
T ss_pred cceEEEccCc---ccccccCC----CCceeeeeeCCCCceeEEeeeccccCC--ceEeeEEEecCCCc---eEEEcCCCc
Confidence 4677777642 22333332 345666777777777666644432111 22333333335666 677777766
Q ss_pred ceeeeEECCCCCEEEEEEecCCCCCC-CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCC
Q 008927 245 FYAFPRMDPRGERMAWIEWHHPNMPW-DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (548)
Q Consensus 245 ~~~~p~~SPDGk~La~~~~~~~~~p~-~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~ 322 (548)
....+.+.+||+.+++.....+. .| ....+++.+.+ .+++.. .+...+.. .......+.-++. ++|+.....
T Consensus 217 ~~~~~~~~~~gk~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~d~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 290 (620)
T COG1506 217 SISKLAFDADGKSIALLGTESDR-GLAEGDFILLLDGE-LGEVDG--DLSSGDDT--RGAWAVEGGLDGDGLLFIATDGG 290 (620)
T ss_pred eeeeeeeCCCCCeeEEeccCCcc-CccccceEEEEecc-ccccce--eeccCCcc--cCcHHhccccCCCcEEEEEecCC
Confidence 67888999999999988755543 23 35667777633 233211 11111000 0111122223445 777655435
Q ss_pred CeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC-CeEEEEEEEC
Q 008927 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-GRSYLGILDD 388 (548)
Q Consensus 323 g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~-g~~~L~~~dl 388 (548)
|...++.++..++....+.... ..+ ..+.. +++.+++..... ...++|+++.
T Consensus 291 g~~~l~~~~~~~~~~~~~~~~~------~~v-----~~f~~---~~~~~~~~~s~~~~p~~i~~~~~ 343 (620)
T COG1506 291 GSSPLFRVDDLGGGVEGLSGDD------GGV-----PGFDV---DGRKLALAYSSPTEPPEIYLYDR 343 (620)
T ss_pred CceEEEEEeccCCceeeecCCC------ceE-----EEEee---CCCEEEEEecCCCCccceEEEcC
Confidence 6667777664444332222110 111 11221 567777776543 3667888875
No 127
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=96.68 E-value=0.0021 Score=63.52 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=40.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc---cc-CccC----hHHHHHHhcCcEEEEeCCCCCCC
Q 008927 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE---AR-GILN----LSIQYWTSRGWAFVDVNYGGSTG 537 (548)
Q Consensus 471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~---~~-~~~~----~~~Q~~asrGyaVl~~NyRGStG 537 (548)
||.+|.+-+|.| +.+ .++++|+||..|+=-... .. .... ...+.|+.+||+|+.+|.||..+
T Consensus 1 DGv~L~adv~~P-~~~----~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~ 70 (272)
T PF02129_consen 1 DGVRLAADVYRP-GAD----GGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGG 70 (272)
T ss_dssp TS-EEEEEEEEE---T----TSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTT
T ss_pred CCCEEEEEEEec-CCC----CCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCccccc
Confidence 799999999999 311 267899999988633211 11 1111 22345999999999999999754
No 128
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.67 E-value=0.075 Score=52.75 Aligned_cols=148 Identities=10% Similarity=0.029 Sum_probs=87.9
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCCceecCC-CCC-CCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITP-DYG-EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (548)
Q Consensus 155 ~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~-~~~-~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~ 232 (548)
++|+-.- ..+||++|+.. -+.|-. ... +.+.+...+..++.+..|+|-... ...+|++.|+.+-+
T Consensus 98 ~RLvV~L--ee~IyIydI~~----MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-------t~GdV~l~d~~nl~ 164 (391)
T KOG2110|consen 98 KRLVVCL--EESIYIYDIKD----MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-------TSGDVVLFDTINLQ 164 (391)
T ss_pred ceEEEEE--cccEEEEeccc----ceeehhhhccCCCccceEeeccCCCCceEEecCCC-------CCceEEEEEcccce
Confidence 3444444 34599999964 232211 000 012334455566666788884211 13589999988754
Q ss_pred ccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc-eeeeEEEcCCCCCcccCCcCceECcC
Q 008927 233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSK 311 (548)
Q Consensus 233 ~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~-~~~~~~l~~~~~~~~~~~~~~~wspD 311 (548)
. ...|.-..+..+..+|||||..||-.+ + .++-|.|..+.. |+ +.+.| .+- +...+.++.|+||
T Consensus 165 ~--v~~I~aH~~~lAalafs~~G~llATAS-e------KGTVIRVf~v~~-G~kl~eFR---RG~--~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 165 P--VNTINAHKGPLAALAFSPDGTLLATAS-E------KGTVIRVFSVPE-GQKLYEFR---RGT--YPVSIYSLSFSPD 229 (391)
T ss_pred e--eeEEEecCCceeEEEECCCCCEEEEec-c------CceEEEEEEcCC-ccEeeeee---CCc--eeeEEEEEEECCC
Confidence 1 334444455577889999999999333 2 267788888874 53 32222 111 0145678999999
Q ss_pred Cc-EEEEEeCCCCeeeEEEEec
Q 008927 312 GE-LFFVTDRKNGFWNLHKWIE 332 (548)
Q Consensus 312 G~-L~~~sd~~~g~~~Ly~~d~ 332 (548)
++ |...++ .+.-+||+++.
T Consensus 230 s~~L~~sS~--TeTVHiFKL~~ 249 (391)
T KOG2110|consen 230 SQFLAASSN--TETVHIFKLEK 249 (391)
T ss_pred CCeEEEecC--CCeEEEEEecc
Confidence 99 444444 57788888764
No 129
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=96.63 E-value=0.052 Score=54.70 Aligned_cols=228 Identities=9% Similarity=0.114 Sum_probs=114.6
Q ss_pred eeEEECCEEEEEeCCC-CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCC--CCEEEEEEeccCCCCCCceeEEEE
Q 008927 149 AFRIFGDTVIFSNYKD-QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVA 225 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~-~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpD--G~~i~~v~~~~~~~~~~~~~~l~~ 225 (548)
+|+.+++.|+=.+-.. -.||..+- . .....+-.. ..+.....|.|. +..|+--+.|. .-.||.
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~-~--~~~~~l~gH----~~~v~~~~fhP~~~~~~lat~s~Dg-------tvklw~ 247 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQ-C--NLLQTLRGH----TSRVGAAVFHPVDSDLNLATASADG-------TVKLWK 247 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCC-c--ceeEEEecc----ccceeeEEEccCCCccceeeeccCC-------ceeeec
Confidence 4556666655544222 36665542 1 122222222 246777889997 44444433332 234555
Q ss_pred EECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcC
Q 008927 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (548)
Q Consensus 226 idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~ 305 (548)
++-++- ...|......++..+|.|+|+.|+-.+.++. | .|| |+.+ +. +.....|.. ..+..
T Consensus 248 ~~~e~~----l~~l~gH~~RVs~VafHPsG~~L~TasfD~t---W---RlW--D~~t-k~--ElL~QEGHs----~~v~~ 308 (459)
T KOG0272|consen 248 LSQETP----LQDLEGHLARVSRVAFHPSGKFLGTASFDST---W---RLW--DLET-KS--ELLLQEGHS----KGVFS 308 (459)
T ss_pred cCCCcc----hhhhhcchhhheeeeecCCCceeeecccccc---h---hhc--cccc-ch--hhHhhcccc----cccce
Confidence 543321 4455544455778899999999985554332 2 344 6664 32 233344443 57899
Q ss_pred ceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927 306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (548)
Q Consensus 306 ~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~ 385 (548)
.+|.+||.|+...-. +....| +|+.+|.-.-...+ . ..+. + ...|+| +++.+.+...++...++-
T Consensus 309 iaf~~DGSL~~tGGl-D~~~Rv--WDlRtgr~im~L~g--H-~k~I--~---~V~fsP----NGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGL-DSLGRV--WDLRTGRCIMFLAG--H-IKEI--L---SVAFSP----NGYHLATGSSDNTCKVWD 373 (459)
T ss_pred eEecCCCceeeccCc-cchhhe--eecccCcEEEEecc--c-ccce--e---eEeECC----CceEEeecCCCCcEEEee
Confidence 999999998776433 233334 35555543322211 0 1111 1 134553 455555665666666664
Q ss_pred EECCCCc-eEeecCCCceeEee--eecCCEEEEEEecCCCCCeEE
Q 008927 386 LDDFGHS-LSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVA 427 (548)
Q Consensus 386 ~dl~~g~-~~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~ 427 (548)
+ ...+ +..+...-+.++.+ ++..+.++++++ .+..-.||
T Consensus 374 L--R~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas-yD~t~kiW 415 (459)
T KOG0272|consen 374 L--RMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS-YDNTVKIW 415 (459)
T ss_pred e--cccccceecccccchhhheEecccCCeEEEEcc-cCcceeee
Confidence 4 3222 22222222234444 555666655553 34344444
No 130
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.62 E-value=0.53 Score=48.84 Aligned_cols=235 Identities=14% Similarity=0.106 Sum_probs=117.2
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCC--CEEEEEEeccCCCCCCceeEEEEE
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF--NRYVTVREDRRQDALNSTTEIVAI 226 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG--~~i~~v~~~~~~~~~~~~~~l~~i 226 (548)
.|+.++..++... ...|+++.+.++ -+.-+.... ....+.++.|||.| ..|+|..-...+. .....|+.|
T Consensus 138 k~s~~D~y~ARvv--~~sl~i~e~t~n-~~~~p~~~l---r~~gi~dFsisP~~n~~~la~~tPEk~~k--pa~~~i~sI 209 (561)
T COG5354 138 KFSIDDKYVARVV--GSSLYIHEITDN-IEEHPFKNL---RPVGILDFSISPEGNHDELAYWTPEKLNK--PAMVRILSI 209 (561)
T ss_pred eeeecchhhhhhc--cCeEEEEecCCc-cccCchhhc---cccceeeEEecCCCCCceEEEEccccCCC--CcEEEEEEc
Confidence 4666666555553 445777776321 111111111 01357789999964 4455542221111 134567777
Q ss_pred ECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCC--C-CCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCC
Q 008927 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHP--N-MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (548)
Q Consensus 227 dl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~--~-~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~ 303 (548)
...+-.. .+.|.+-.+ ....|.+.|++|++....+- + .-+..++||++++.. .. .+...+.. ..+
T Consensus 210 p~~s~l~--tk~lfk~~~--~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~---i~V~~~~~----~pV 277 (561)
T COG5354 210 PKNSVLV--TKNLFKVSG--VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RS---IPVEKDLK----DPV 277 (561)
T ss_pred cCCCeee--eeeeEeecc--cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-cc---cceecccc----ccc
Confidence 7332210 122333333 25679999999988764443 1 113468999999873 22 22211222 568
Q ss_pred cCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEE
Q 008927 304 TEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 382 (548)
Q Consensus 304 ~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~ 382 (548)
.++.|.|+++ +..++-... ..+-.+++.++ ++-..++... ++..|+| .+++|++..-.+-...
T Consensus 278 hdf~W~p~S~~F~vi~g~~p--a~~s~~~lr~N-l~~~~Pe~~r----------NT~~fsp---~~r~il~agF~nl~gn 341 (561)
T COG5354 278 HDFTWEPLSSRFAVISGYMP--ASVSVFDLRGN-LRFYFPEQKR----------NTIFFSP---HERYILFAGFDNLQGN 341 (561)
T ss_pred eeeeecccCCceeEEecccc--cceeecccccc-eEEecCCccc----------ccccccC---cccEEEEecCCccccc
Confidence 9999999998 777763211 22344455333 4433332211 1122333 4566665444444455
Q ss_pred EEEEECCCCceE--eecCCCceeEeeeecCCEEEEEEec
Q 008927 383 LGILDDFGHSLS--LLDIPFTDIDNITLGNDCLFVEGAS 419 (548)
Q Consensus 383 L~~~dl~~g~~~--~l~~~~~~~~~~s~d~~~l~~~~ss 419 (548)
+-.+|..+.... .+......+..+++|+..+.....+
T Consensus 342 i~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts 380 (561)
T COG5354 342 IEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTS 380 (561)
T ss_pred eEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCC
Confidence 666666543221 1222222344446666655444433
No 131
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.58 E-value=0.42 Score=47.92 Aligned_cols=206 Identities=11% Similarity=0.148 Sum_probs=102.0
Q ss_pred eeEEECCEEEEEeCC-CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927 149 AFRIFGDTVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~-~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id 227 (548)
.++.||+.+++.+.. ...+-++|++. ++...-.+. +++-..-| +.++ ....+|.+. .+..+.
T Consensus 101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~--~kvv~ei~~---PGC~~iyP-~~~~--~F~~lC~DG---------sl~~v~ 163 (342)
T PF06433_consen 101 ALSADGKFLYVQNFTPATSVTVVDLAA--KKVVGEIDT---PGCWLIYP-SGNR--GFSMLCGDG---------SLLTVT 163 (342)
T ss_dssp EE-TTSSEEEEEEESSSEEEEEEETTT--TEEEEEEEG---TSEEEEEE-EETT--EEEEEETTS---------CEEEEE
T ss_pred EEccCCcEEEEEccCCCCeEEEEECCC--CceeeeecC---CCEEEEEe-cCCC--ceEEEecCC---------ceEEEE
Confidence 455567777666543 45799999986 333222111 12333222 2333 345556653 355555
Q ss_pred CC-CCCccCcEEeee----cCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc-eeeeEEEcC-C---C
Q 008927 228 LN-GQNIQEPKVLVS----GSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAG-F---D 296 (548)
Q Consensus 228 l~-~g~~~~~~~L~~----~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~-~~~~~~l~~-~---~ 296 (548)
|+ .|+. .+..+. ..+ .+..|.++.++.+++|++. ..++|.+++.+++. +.....+.. . .
T Consensus 164 Ld~~Gk~--~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy--------~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~ 233 (342)
T PF06433_consen 164 LDADGKE--AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY--------EGNVYSADLSGDSAKFGKPWSLLTDAEKAD 233 (342)
T ss_dssp ETSTSSE--EEEEEEESSTTTS-B-S--EEETTTTEEEEEBT--------TSEEEEEEETTSSEEEEEEEESS-HHHHHT
T ss_pred ECCCCCE--eEeeccccCCCCcccccccceECCCCeEEEEec--------CCEEEEEeccCCcccccCcccccCcccccc
Confidence 54 3331 222211 112 2457778888888989873 46899999985432 111111111 0 0
Q ss_pred CCcccCCcCceECcCCc-EEEEEeCC------CCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCC
Q 008927 297 PTIVESPTEPKWSSKGE-LFFVTDRK------NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKN 369 (548)
Q Consensus 297 ~~~~~~~~~~~wspDG~-L~~~sd~~------~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~ 369 (548)
..+....+..++.+... ||++.+.+ .+..+||.+|+++++...-.+.+ .+.++ ...+. +++
T Consensus 234 ~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----~~~~S-----i~Vsq---d~~ 301 (342)
T PF06433_consen 234 GWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----HPIDS-----IAVSQ---DDK 301 (342)
T ss_dssp TEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----EEESE-----EEEES---SSS
T ss_pred CcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----Cccce-----EEEcc---CCC
Confidence 01113345566766544 77765431 34568999999998753222211 12221 23332 555
Q ss_pred EEEEEEEeCCeEEEEEEECCCCceE
Q 008927 370 LIACSYRQNGRSYLGILDDFGHSLS 394 (548)
Q Consensus 370 ~l~~~~~~~g~~~L~~~dl~~g~~~ 394 (548)
-+++... .+...|+++|..+|+..
T Consensus 302 P~L~~~~-~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 302 PLLYALS-AGDGTLDVYDAATGKLV 325 (342)
T ss_dssp -EEEEEE-TTTTEEEEEETTT--EE
T ss_pred cEEEEEc-CCCCeEEEEeCcCCcEE
Confidence 5655544 34457899999998754
No 132
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.57 E-value=0.65 Score=45.01 Aligned_cols=237 Identities=10% Similarity=0.053 Sum_probs=118.8
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
.|++|.++|+=. ..++.|-+-|.-+. .+...|+-. ..-+...++||.|+.|++---+ ....||.+..
T Consensus 62 ~ws~Dsr~ivSa-SqDGklIvWDs~Tt-nK~haipl~----s~WVMtCA~sPSg~~VAcGGLd-------N~Csiy~ls~ 128 (343)
T KOG0286|consen 62 DWSTDSRRIVSA-SQDGKLIVWDSFTT-NKVHAIPLP----SSWVMTCAYSPSGNFVACGGLD-------NKCSIYPLST 128 (343)
T ss_pred EecCCcCeEEee-ccCCeEEEEEcccc-cceeEEecC----ceeEEEEEECCCCCeEEecCcC-------ceeEEEeccc
Confidence 455666555443 34566655555431 222233221 2345567899999998884222 2356666553
Q ss_pred C--CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCc
Q 008927 229 N--GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (548)
Q Consensus 229 ~--~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~ 306 (548)
+ .+.....+.|.....+.+--+|-+|+.-| .+ . ..+...+-|++. |. ....+.+.. ..+..+
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~~il--T~--S-----GD~TCalWDie~-g~--~~~~f~GH~----gDV~sl 192 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDDNHIL--TG--S-----GDMTCALWDIET-GQ--QTQVFHGHT----GDVMSL 192 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCCCceE--ec--C-----CCceEEEEEccc-ce--EEEEecCCc----ccEEEE
Confidence 3 22211134455556677777888887633 22 1 134566678884 54 234455544 457778
Q ss_pred eECc-CCcEEEEEeCCCCeeeEEEEeccCCeeEeec-ccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEE
Q 008927 307 KWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (548)
Q Consensus 307 ~wsp-DG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~-~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~ 384 (548)
..+| |++.++...- +... +++|...+..++-. -.+.|+.. ..|.| +|..+. +-.+++..+||
T Consensus 193 sl~p~~~ntFvSg~c-D~~a--klWD~R~~~c~qtF~ghesDINs---------v~ffP---~G~afa-tGSDD~tcRly 256 (343)
T KOG0286|consen 193 SLSPSDGNTFVSGGC-DKSA--KLWDVRSGQCVQTFEGHESDINS---------VRFFP---SGDAFA-TGSDDATCRLY 256 (343)
T ss_pred ecCCCCCCeEEeccc-ccce--eeeeccCcceeEeecccccccce---------EEEcc---CCCeee-ecCCCceeEEE
Confidence 8889 7775554222 2223 34455455544433 23344433 33443 555443 44466777665
Q ss_pred EEECCCCceEeecCCCce---eEee-eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 385 ILDDFGHSLSLLDIPFTD---IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 385 ~~dl~~g~~~~l~~~~~~---~~~~-s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
|+.....-.+-..... +.++ -...++|+|.+... ....+.|.-.++
T Consensus 257 --DlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d---~~c~vWDtlk~e 306 (343)
T KOG0286|consen 257 --DLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD---FTCNVWDTLKGE 306 (343)
T ss_pred --eecCCcEEeeeccCcccCCceeEEEcccccEEEeeecC---CceeEeeccccc
Confidence 5444322222222222 3333 12345566665432 345566644443
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.56 E-value=0.087 Score=58.02 Aligned_cols=153 Identities=12% Similarity=0.105 Sum_probs=85.7
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (548)
Q Consensus 150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~ 229 (548)
+.-+|..|++-+ .|..|-+++.+.. +..+.+-.. ...+..+.++|.|+.|+.+.-+ ..|..+|+.
T Consensus 104 v~g~g~~iaags-dD~~vK~~~~~D~-s~~~~lrgh----~apVl~l~~~p~~~fLAvss~d---------G~v~iw~~~ 168 (933)
T KOG1274|consen 104 VSGSGKMIAAGS-DDTAVKLLNLDDS-SQEKVLRGH----DAPVLQLSYDPKGNFLAVSSCD---------GKVQIWDLQ 168 (933)
T ss_pred EecCCcEEEeec-CceeEEEEecccc-chheeeccc----CCceeeeeEcCCCCEEEEEecC---------ceEEEEEcc
Confidence 333455777765 2446777777641 333333332 2335667899999987776433 368888998
Q ss_pred CCCcc-CcEEeeecCC-----ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCC
Q 008927 230 GQNIQ-EPKVLVSGSD-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (548)
Q Consensus 230 ~g~~~-~~~~L~~~~~-----~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~ 303 (548)
.+... ...-+....+ .+..++|+|||..+++... ...+-+++.++ .+ ....+.+..-. ..+
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~--------d~~Vkvy~r~~-we--~~f~Lr~~~~s--s~~ 235 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV--------DNTVKVYSRKG-WE--LQFKLRDKLSS--SKF 235 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc--------CCeEEEEccCC-ce--eheeecccccc--cce
Confidence 87520 0111222222 3467899999888886652 23577777663 33 12222222101 125
Q ss_pred cCceECcCCcEEEEEeCCCCeeeEEEEecc
Q 008927 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIES 333 (548)
Q Consensus 304 ~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~ 333 (548)
....|||+|+.+..++. .| +|.++|.+
T Consensus 236 ~~~~wsPnG~YiAAs~~-~g--~I~vWnv~ 262 (933)
T KOG1274|consen 236 SDLQWSPNGKYIAASTL-DG--QILVWNVD 262 (933)
T ss_pred EEEEEcCCCcEEeeecc-CC--cEEEEecc
Confidence 67899999994444444 33 34444443
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.55 E-value=0.61 Score=51.69 Aligned_cols=97 Identities=11% Similarity=0.171 Sum_probs=63.6
Q ss_pred eEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (548)
Q Consensus 221 ~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~ 300 (548)
+.+.++....++. -.+|+...-.....+++-+|+++|.-+ +...|-++++...+ ..+.+-+.+
T Consensus 76 ~tv~~y~fps~~~--~~iL~Rftlp~r~~~v~g~g~~iaags--------dD~~vK~~~~~D~s---~~~~lrgh~---- 138 (933)
T KOG1274|consen 76 NTVLRYKFPSGEE--DTILARFTLPIRDLAVSGSGKMIAAGS--------DDTAVKLLNLDDSS---QEKVLRGHD---- 138 (933)
T ss_pred ceEEEeeCCCCCc--cceeeeeeccceEEEEecCCcEEEeec--------CceeEEEEeccccc---hheeecccC----
Confidence 4667777777761 225554433345668999999999655 24568888877433 234455544
Q ss_pred cCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCee
Q 008927 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV 337 (548)
Q Consensus 301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~ 337 (548)
..+..+.+.|+|+++.++.- +| .|+.++++++..
T Consensus 139 apVl~l~~~p~~~fLAvss~-dG--~v~iw~~~~~~~ 172 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSC-DG--KVQIWDLQDGIL 172 (933)
T ss_pred CceeeeeEcCCCCEEEEEec-Cc--eEEEEEcccchh
Confidence 67889999999997777665 55 466667767654
No 135
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=96.49 E-value=0.043 Score=55.08 Aligned_cols=133 Identities=14% Similarity=0.159 Sum_probs=82.1
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (548)
Q Consensus 164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~ 243 (548)
++.|-..|..+ +..++-.+. ..++..+..++||..|+....+ +.|=++|+.+.+ .+......
T Consensus 321 DkkvRfwD~Rs--~~~~~sv~~----gg~vtSl~ls~~g~~lLsssRD---------dtl~viDlRt~e---I~~~~sA~ 382 (459)
T KOG0288|consen 321 DKKVRFWDIRS--ADKTRSVPL----GGRVTSLDLSMDGLELLSSSRD---------DTLKVIDLRTKE---IRQTFSAE 382 (459)
T ss_pred ccceEEEeccC--CceeeEeec----CcceeeEeeccCCeEEeeecCC---------Cceeeeeccccc---EEEEeecc
Confidence 34455555544 344433333 2478888899999887654222 357789999988 66665443
Q ss_pred Cc-----eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEE
Q 008927 244 DF-----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT 318 (548)
Q Consensus 244 ~~-----~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~s 318 (548)
++ ..-..|||||+++|--+ ....||+.++. +|++.......+.+ ..+....|.|-|+-++..
T Consensus 383 g~k~asDwtrvvfSpd~~YvaAGS--------~dgsv~iW~v~-tgKlE~~l~~s~s~----~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSYVAAGS--------ADGSVYIWSVF-TGKLEKVLSLSTSN----AAITSLSWNPSGSGLLSA 449 (459)
T ss_pred ccccccccceeEECCCCceeeecc--------CCCcEEEEEcc-CceEEEEeccCCCC----cceEEEEEcCCCchhhcc
Confidence 33 34568999999887322 24579999998 46654333333332 357888999999833445
Q ss_pred eCCCCeeeEE
Q 008927 319 DRKNGFWNLH 328 (548)
Q Consensus 319 d~~~g~~~Ly 328 (548)
|+ +....||
T Consensus 450 dk-~~~v~lW 458 (459)
T KOG0288|consen 450 DK-QKAVTLW 458 (459)
T ss_pred cC-CcceEec
Confidence 55 4443343
No 136
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.97 Score=44.17 Aligned_cols=271 Identities=10% Similarity=0.082 Sum_probs=135.7
Q ss_pred ceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (548)
Q Consensus 191 ~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~ 270 (548)
.+..++.++++|..++..+++ ..|.++|..+|.. .+.|........-.+|-.....+.+.+. . +
T Consensus 15 ~~i~sl~fs~~G~~litss~d---------Dsl~LYd~~~g~~--~~ti~skkyG~~~~~Fth~~~~~i~sSt-k----~ 78 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSED---------DSLRLYDSLSGKQ--VKTINSKKYGVDLACFTHHSNTVIHSST-K----E 78 (311)
T ss_pred CceeEEEecCCCCEEEEecCC---------CeEEEEEcCCCce--eeEeecccccccEEEEecCCceEEEccC-C----C
Confidence 356778899999988774333 2577778888761 3444432111222234444455554442 1 1
Q ss_pred CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCC
Q 008927 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP 350 (548)
Q Consensus 271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p 350 (548)
...|..+++.. .+ -.|...|.. ..+..+.-+|-++.++.+.. +. .|.++|+...+-+-+.... +.|
T Consensus 79 -d~tIryLsl~d-Nk--ylRYF~GH~----~~V~sL~~sP~~d~FlS~S~-D~--tvrLWDlR~~~cqg~l~~~---~~p 144 (311)
T KOG1446|consen 79 -DDTIRYLSLHD-NK--YLRYFPGHK----KRVNSLSVSPKDDTFLSSSL-DK--TVRLWDLRVKKCQGLLNLS---GRP 144 (311)
T ss_pred -CCceEEEEeec-Cc--eEEEcCCCC----ceEEEEEecCCCCeEEeccc-CC--eEEeeEecCCCCceEEecC---CCc
Confidence 35688888874 33 245566654 45777888887765544433 32 4555665444433222110 011
Q ss_pred cccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECC---CCceEee--cC-CCceeEee--eecCCEEEEEEecCCC
Q 008927 351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF---GHSLSLL--DI-PFTDIDNI--TLGNDCLFVEGASGVE 422 (548)
Q Consensus 351 ~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~---~g~~~~l--~~-~~~~~~~~--s~d~~~l~~~~ss~~~ 422 (548)
. -++. ..-|+|....++. .|.++|+. .|--+.. +. ....+..+ ++||+.|++...
T Consensus 145 i-------~AfD-----p~GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~---- 207 (311)
T KOG1446|consen 145 I-------AAFD-----PEGLIFALANGSE-LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN---- 207 (311)
T ss_pred c-------eeEC-----CCCcEEEEecCCC-eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----
Confidence 1 1232 2234444333332 56666753 2322222 21 12334444 889998876543
Q ss_pred CCeEEEEEcCCCceeeeeeEEEecCCCCCCccCCCc-cCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEE
Q 008927 423 PSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYF-SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKS 501 (548)
Q Consensus 423 p~~l~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~~~-~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~i 501 (548)
...++++|.=+|.+.. + ........+..++ +.+ +.-+.| +.+. +..+||.|=..- +++.-...-.
T Consensus 208 ~s~~~~lDAf~G~~~~-t-fs~~~~~~~~~~~-a~ftPds~Fv-l~gs-~dg~i~vw~~~t---------g~~v~~~~~~ 273 (311)
T KOG1446|consen 208 ASFIYLLDAFDGTVKS-T-FSGYPNAGNLPLS-ATFTPDSKFV-LSGS-DDGTIHVWNLET---------GKKVAVLRGP 273 (311)
T ss_pred CCcEEEEEccCCcEee-e-EeeccCCCCccee-EEECCCCcEE-EEec-CCCcEEEEEcCC---------CcEeeEecCC
Confidence 3578899876776321 0 0111111111122 223 223333 4444 545688887621 2221111112
Q ss_pred ccCccccccCccChHHHHHHhcC
Q 008927 502 HGGPTSEARGILNLSIQYWTSRG 524 (548)
Q Consensus 502 HGGP~~~~~~~~~~~~Q~~asrG 524 (548)
|+||..... |+|....|++.+
T Consensus 274 ~~~~~~~~~--fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 274 NGGPVSCVR--FNPRYAMFVSAS 294 (311)
T ss_pred CCCCccccc--cCCceeeeeecC
Confidence 889887765 777665565543
No 137
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.45 E-value=1.4 Score=45.89 Aligned_cols=228 Identities=12% Similarity=0.082 Sum_probs=109.7
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC
Q 008927 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (548)
Q Consensus 151 ~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~ 230 (548)
..++++|++.. .++.||.+|.++ |+..=-.... ......|... + ..|++ ... ...|+.+|+++
T Consensus 117 ~v~~~~v~v~~-~~g~l~ald~~t--G~~~W~~~~~---~~~~ssP~v~-~-~~v~v-~~~--------~g~l~ald~~t 179 (394)
T PRK11138 117 TVAGGKVYIGS-EKGQVYALNAED--GEVAWQTKVA---GEALSRPVVS-D-GLVLV-HTS--------NGMLQALNESD 179 (394)
T ss_pred EEECCEEEEEc-CCCEEEEEECCC--CCCcccccCC---CceecCCEEE-C-CEEEE-ECC--------CCEEEEEEccC
Confidence 34677777754 567899999876 5442111110 1123344443 3 34443 222 24799999999
Q ss_pred CCccCcEEeeec--CC----ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCC----cc
Q 008927 231 QNIQEPKVLVSG--SD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT----IV 300 (548)
Q Consensus 231 g~~~~~~~L~~~--~~----~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~----~~ 300 (548)
|+ ..--.+. +. ....|... +| .++ +.. ....++.++.+ +|+..=...+...... ..
T Consensus 180 G~---~~W~~~~~~~~~~~~~~~sP~v~-~~-~v~-~~~-------~~g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 180 GA---VKWTVNLDVPSLTLRGESAPATA-FG-GAI-VGG-------DNGRVSAVLME-QGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CC---EeeeecCCCCcccccCCCCCEEE-CC-EEE-EEc-------CCCEEEEEEcc-CChhhheeccccCCCccchhcc
Confidence 97 3211111 11 12345543 22 343 331 13468888877 3541000111110000 00
Q ss_pred -cCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC
Q 008927 301 -ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (548)
Q Consensus 301 -~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g 379 (548)
.....|.. .||.+|+.+. .| .|+.+|+++|+..--.+ +..+ ..... .++.||+...
T Consensus 246 ~~~~~sP~v-~~~~vy~~~~--~g--~l~ald~~tG~~~W~~~----~~~~------~~~~~-----~~~~vy~~~~--- 302 (394)
T PRK11138 246 VDVDTTPVV-VGGVVYALAY--NG--NLVALDLRSGQIVWKRE----YGSV------NDFAV-----DGGRIYLVDQ--- 302 (394)
T ss_pred cccCCCcEE-ECCEEEEEEc--CC--eEEEEECCCCCEEEeec----CCCc------cCcEE-----ECCEEEEEcC---
Confidence 00123333 2454665543 23 68999998887532111 1110 00112 4677776542
Q ss_pred eEEEEEEECCCCceEe-ecC-CCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 380 RSYLGILDDFGHSLSL-LDI-PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 380 ~~~L~~~dl~~g~~~~-l~~-~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
..+|+.+|.++|+..- ... ...........++.+++... ...|+.+|.++|+.
T Consensus 303 ~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~----~G~l~~ld~~tG~~ 357 (394)
T PRK11138 303 NDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDS----EGYLHWINREDGRF 357 (394)
T ss_pred CCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeC----CCEEEEEECCCCCE
Confidence 3469999999986531 111 11112222234666665432 35799999988874
No 138
>PHA02857 monoglyceride lipase; Provisional
Probab=96.45 E-value=0.0059 Score=60.25 Aligned_cols=55 Identities=20% Similarity=0.235 Sum_probs=45.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
||..+++.+|.|.+ .+.|+|+++||.... ...|....++|+.+||.|+.+|+||.
T Consensus 9 ~g~~l~~~~~~~~~--------~~~~~v~llHG~~~~--~~~~~~~~~~l~~~g~~via~D~~G~ 63 (276)
T PHA02857 9 DNDYIYCKYWKPIT--------YPKALVFISHGAGEH--SGRYEELAENISSLGILVFSHDHIGH 63 (276)
T ss_pred CCCEEEEEeccCCC--------CCCEEEEEeCCCccc--cchHHHHHHHHHhCCCEEEEccCCCC
Confidence 89999999999831 245899999998643 33566778899999999999999996
No 139
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=96.44 E-value=0.0049 Score=65.59 Aligned_cols=67 Identities=21% Similarity=0.394 Sum_probs=52.0
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccC------hHHHHHHhcCcEEEEeCCCCCC
Q 008927 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN------LSIQYWTSRGWAFVDVNYGGST 536 (548)
Q Consensus 463 ~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~------~~~Q~~asrGyaVl~~NyRGSt 536 (548)
.+.++-+ ||.+++.-||.|++ .++.|+|+..+=.|...-...+. +..++||.+||+|+.+|-||+.
T Consensus 21 ~v~V~MR-DGvrL~~dIy~Pa~-------~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~ 92 (563)
T COG2936 21 DVMVPMR-DGVRLAADIYRPAG-------AGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRG 92 (563)
T ss_pred eeeEEec-CCeEEEEEEEccCC-------CCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccc
Confidence 4667777 99999999999975 46889999999777655422221 2225899999999999999976
Q ss_pred C
Q 008927 537 G 537 (548)
Q Consensus 537 G 537 (548)
+
T Consensus 93 ~ 93 (563)
T COG2936 93 G 93 (563)
T ss_pred c
Confidence 5
No 140
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=96.43 E-value=1.5 Score=45.81 Aligned_cols=202 Identities=13% Similarity=0.111 Sum_probs=103.5
Q ss_pred HHHhcCCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEE
Q 008927 82 DVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS 160 (548)
Q Consensus 82 ~~l~~~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~ 160 (548)
..+...++.+..+.++| |+.| |.... +|+-+-|.... |.--+|.+..-+ +.+ ..+...+..=+|+
T Consensus 314 ~~i~GHnK~ITaLtv~~d~~~i-~Sgsy---DG~I~~W~~~~---g~~~~~~g~~h~--nqI-----~~~~~~~~~~~~t 379 (603)
T KOG0318|consen 314 KVISGHNKSITALTVSPDGKTI-YSGSY---DGHINSWDSGS---GTSDRLAGKGHT--NQI-----KGMAASESGELFT 379 (603)
T ss_pred heecccccceeEEEEcCCCCEE-Eeecc---CceEEEEecCC---cccccccccccc--ceE-----EEEeecCCCcEEE
Confidence 33455567777788887 4333 32222 46655554422 233333322100 000 1222222122444
Q ss_pred eCCCCeEEEEeCCCCC---CCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcE
Q 008927 161 NYKDQRLYKHSIDSKD---SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK 237 (548)
Q Consensus 161 ~~~~~~Ly~~~~~~~~---~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~ 237 (548)
..-|..|+++++.+++ .+...|-.. --.++.++||..++.++.. +|.++.-.++- .
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q-------P~~lav~~d~~~avv~~~~----------~iv~l~~~~~~----~ 438 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLGSQ-------PKGLAVLSDGGTAVVACIS----------DIVLLQDQTKV----S 438 (603)
T ss_pred EecCCeEEEEecccCcccccceeecCCC-------ceeEEEcCCCCEEEEEecC----------cEEEEecCCcc----e
Confidence 4445678888876420 111122221 1134566777665555433 45655432321 1
Q ss_pred EeeecCCc-eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceee-eEEEcCCCCCcccCCcCceECcCCcEE
Q 008927 238 VLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAGFDPTIVESPTEPKWSSKGELF 315 (548)
Q Consensus 238 ~L~~~~~~-~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~-~~~l~~~~~~~~~~~~~~~wspDG~L~ 315 (548)
.+. ..+ ....+++||++.+| +.- +...|+++.+.+ +++.+ ..++.. . ..+...++||||+.+
T Consensus 439 ~~~--~~y~~s~vAv~~~~~~va-VGG-------~Dgkvhvysl~g-~~l~ee~~~~~h-~----a~iT~vaySpd~~yl 502 (603)
T KOG0318|consen 439 SIP--IGYESSAVAVSPDGSEVA-VGG-------QDGKVHVYSLSG-DELKEEAKLLEH-R----AAITDVAYSPDGAYL 502 (603)
T ss_pred eec--cccccceEEEcCCCCEEE-Eec-------ccceEEEEEecC-Ccccceeeeecc-c----CCceEEEECCCCcEE
Confidence 111 122 24557999999887 431 235699999984 44323 233332 2 467889999999966
Q ss_pred EEEeCCCCeeeEEEEeccCCee
Q 008927 316 FVTDRKNGFWNLHKWIESNNEV 337 (548)
Q Consensus 316 ~~sd~~~g~~~Ly~~d~~~g~~ 337 (548)
...|. .+ .+..+|+++.+.
T Consensus 503 a~~Da-~r--kvv~yd~~s~~~ 521 (603)
T KOG0318|consen 503 AAGDA-SR--KVVLYDVASREV 521 (603)
T ss_pred EEecc-CC--cEEEEEcccCce
Confidence 67776 43 466677777665
No 141
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.42 E-value=0.59 Score=49.05 Aligned_cols=232 Identities=12% Similarity=0.076 Sum_probs=116.0
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (548)
Q Consensus 164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~ 243 (548)
.++|.+-|+.+ |..++-.+...+......-+.||.|++.++.+..+ .|-+.+..+-..-+.+.|. .
T Consensus 281 ~~~l~IWDI~t--G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~----------sisIyEtpsf~lld~Kslk--i 346 (698)
T KOG2314|consen 281 GQQLIIWDIAT--GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN----------SISIYETPSFMLLDKKSLK--I 346 (698)
T ss_pred CceEEEEEccc--cchhcceeccCCCccccceEEeccCCceeEEeccc----------eEEEEecCceeeecccccC--C
Confidence 35777778877 54433222111122345567899999998887432 2333222111000001111 1
Q ss_pred CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCC-
Q 008927 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK- 321 (548)
Q Consensus 244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~- 321 (548)
..+..+.|||-+.-|||-.-...+.| .++-++.+....++..+. +.. .+...+.|-.+|+ |.+-.||.
T Consensus 347 ~gIr~FswsP~~~llAYwtpe~~~~p---arvtL~evPs~~~iRt~n-lfn------VsDckLhWQk~gdyLcvkvdR~t 416 (698)
T KOG2314|consen 347 SGIRDFSWSPTSNLLAYWTPETNNIP---ARVTLMEVPSKREIRTKN-LFN------VSDCKLHWQKSGDYLCVKVDRHT 416 (698)
T ss_pred ccccCcccCCCcceEEEEcccccCCc---ceEEEEecCccceeeecc-cee------eeccEEEeccCCcEEEEEEEeec
Confidence 12345689999999998653222322 456677776422222111 111 4456789999999 77777763
Q ss_pred -CC------eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC--CeEEEEEEECCCCc
Q 008927 322 -NG------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGILDDFGHS 392 (548)
Q Consensus 322 -~g------~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~--g~~~L~~~dl~~g~ 392 (548)
.+ +.+|++++-..=-+..+ +...+. -.|+|-| .|+++....... ..-+.|.+....++
T Consensus 417 K~~~~g~f~n~eIfrireKdIpve~v-----elke~v-----i~FaWEP---~gdkF~vi~g~~~k~tvsfY~~e~~~~~ 483 (698)
T KOG2314|consen 417 KSKVKGQFSNLEIFRIREKDIPVEVV-----ELKESV-----IAFAWEP---HGDKFAVISGNTVKNTVSFYAVETNIKK 483 (698)
T ss_pred cccccceEeeEEEEEeeccCCCceee-----ecchhe-----eeeeecc---CCCeEEEEEccccccceeEEEeecCCCc
Confidence 11 23466665321111111 111111 1245655 666665544333 33455555543444
Q ss_pred eEeec-CCCcee--EeeeecCCEEEEEEecCCCCCeEEEEEcCC
Q 008927 393 LSLLD-IPFTDI--DNITLGNDCLFVEGASGVEPSSVAKVTLDD 433 (548)
Q Consensus 393 ~~~l~-~~~~~~--~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~ 433 (548)
.+.+. .+-... -.+++.|+.+++.+-.. ..++++.+|.+-
T Consensus 484 ~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 484 PSLVKELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDTDY 526 (698)
T ss_pred hhhhhhhcccccceEEEcCCCcEEEEEEecc-cccceEEEecch
Confidence 43332 121111 12378888776665433 678899998764
No 142
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.41 E-value=0.32 Score=50.47 Aligned_cols=230 Identities=13% Similarity=0.096 Sum_probs=107.5
Q ss_pred CCeEEEEeCCCCCC---CceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee
Q 008927 164 DQRLYKHSIDSKDS---SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240 (548)
Q Consensus 164 ~~~Ly~~~~~~~~~---~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~ 240 (548)
|..+...|+.|=.. .-++|.+.+ .-.+..+.||+.|..|+++... .+.-++|.++.+ .-...
T Consensus 188 Dy~v~~wDf~gMdas~~~fr~l~P~E---~h~i~sl~ys~Tg~~iLvvsg~---------aqakl~DRdG~~---~~e~~ 252 (641)
T KOG0772|consen 188 DYTVKFWDFQGMDASMRSFRQLQPCE---THQINSLQYSVTGDQILVVSGS---------AQAKLLDRDGFE---IVEFS 252 (641)
T ss_pred cceEEEEecccccccchhhhccCccc---ccccceeeecCCCCeEEEEecC---------cceeEEccCCce---eeeee
Confidence 33455556654111 225665542 1235567899999999888533 234455555543 21122
Q ss_pred ecCC----------c---eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE----cCCCCCcccCC
Q 008927 241 SGSD----------F---YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV----AGFDPTIVESP 303 (548)
Q Consensus 241 ~~~~----------~---~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l----~~~~~~~~~~~ 303 (548)
.|+. . ...-.|.|+.+..+..... ...|.+.+++...+ ...++ .+.. . ..+
T Consensus 253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~-------DgtlRiWdv~~~k~--q~qVik~k~~~g~-R--v~~ 320 (641)
T KOG0772|consen 253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY-------DGTLRIWDVNNTKS--QLQVIKTKPAGGK-R--VPV 320 (641)
T ss_pred ccchhhhhhhccCCceeeeeccccccCcccceEEecC-------CCcEEEEecCCchh--heeEEeeccCCCc-c--cCc
Confidence 2211 1 1234799999977655422 23355556653222 11111 1211 2 556
Q ss_pred cCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecc-cccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEE
Q 008927 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 382 (548)
Q Consensus 304 ~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~-~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~ 382 (548)
....|++||+++...-. +|--++|... +-.++.... .++.... .+.....|++ |++.|+ +...++ .
T Consensus 321 tsC~~nrdg~~iAagc~-DGSIQ~W~~~--~~~v~p~~~vk~AH~~g----~~Itsi~FS~---dg~~Ll-SRg~D~--t 387 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCL-DGSIQIWDKG--SRTVRPVMKVKDAHLPG----QDITSISFSY---DGNYLL-SRGFDD--T 387 (641)
T ss_pred eeeecCCCcchhhhccc-CCceeeeecC--CcccccceEeeeccCCC----CceeEEEecc---ccchhh-hccCCC--c
Confidence 78899999995333222 4655665541 111111110 0111000 1233455664 666554 332333 4
Q ss_pred EEEEECCCCce-----EeecCCCcee-EeeeecCCEEEEEEecC---CCCCeEEEEEcCCC
Q 008927 383 LGILDDFGHSL-----SLLDIPFTDI-DNITLGNDCLFVEGASG---VEPSSVAKVTLDDH 434 (548)
Q Consensus 383 L~~~dl~~g~~-----~~l~~~~~~~-~~~s~d~~~l~~~~ss~---~~p~~l~~~d~~~~ 434 (548)
|.+.|+..-+. +-|..++..- ..++++++ |++++++. ..++.|+.+|..+-
T Consensus 388 LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~ 447 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTL 447 (641)
T ss_pred eeeeeccccccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccce
Confidence 45555543211 1122222211 12366655 55666553 24567888876543
No 143
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=96.39 E-value=0.0089 Score=62.38 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=49.8
Q ss_pred eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 536 (548)
Q Consensus 462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt 536 (548)
+...+... +|..++..++.|.. ++..|+||++||...... .|......|+++||.|+.+|+||..
T Consensus 111 ~~~~~~~~-~~~~l~~~~~~p~~-------~~~~~~Vl~lHG~~~~~~--~~~~~a~~L~~~Gy~V~~~D~rGhG 175 (395)
T PLN02652 111 ATSLFYGA-RRNALFCRSWAPAA-------GEMRGILIIIHGLNEHSG--RYLHFAKQLTSCGFGVYAMDWIGHG 175 (395)
T ss_pred EEEEEECC-CCCEEEEEEecCCC-------CCCceEEEEECCchHHHH--HHHHHHHHHHHCCCEEEEeCCCCCC
Confidence 44556776 88899999999853 234589999999865432 2456678899999999999999864
No 144
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=96.39 E-value=0.0077 Score=60.97 Aligned_cols=68 Identities=24% Similarity=0.369 Sum_probs=40.3
Q ss_pred CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEcc---------Cccc---cccCcc-C---hHHHHHHhc
Q 008927 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG---------GPTS---EARGIL-N---LSIQYWTSR 523 (548)
Q Consensus 460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHG---------GP~~---~~~~~~-~---~~~Q~~asr 523 (548)
..|.+.|.+. ++..+.+||+.|++. .++.|.||.+|| |+.+ .....+ + ...-+||.+
T Consensus 87 ~~EKv~f~~~-p~~~vpaylLvPd~~------~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~ 159 (390)
T PF12715_consen 87 TREKVEFNTT-PGSRVPAYLLVPDGA------KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR 159 (390)
T ss_dssp EEEEEEE--S-TTB-EEEEEEEETT--------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT
T ss_pred EEEEEEEEcc-CCeeEEEEEEecCCC------CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC
Confidence 4578888887 999999999999752 357899999998 3322 000011 1 234579999
Q ss_pred CcEEEEeCCCC
Q 008927 524 GWAFVDVNYGG 534 (548)
Q Consensus 524 GyaVl~~NyRG 534 (548)
||+|+.||..|
T Consensus 160 GYVvla~D~~g 170 (390)
T PF12715_consen 160 GYVVLAPDALG 170 (390)
T ss_dssp TSEEEEE--TT
T ss_pred CCEEEEEcccc
Confidence 99999999776
No 145
>PLN02872 triacylglycerol lipase
Probab=96.33 E-value=0.0086 Score=62.38 Aligned_cols=73 Identities=16% Similarity=0.063 Sum_probs=50.7
Q ss_pred CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh----HHHHHHhcCcEEEEeCCCCC
Q 008927 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL----SIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~----~~Q~~asrGyaVl~~NyRGS 535 (548)
+.|...++++ ||..+.-.-+++.++. .. ..+.|.||++||...+...+..+. ..-.|+++||.|+.+|.||.
T Consensus 43 ~~e~h~v~T~-DGy~L~l~ri~~~~~~-~~--~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~ 118 (395)
T PLN02872 43 SCTEHTIQTK-DGYLLALQRVSSRNPR-LG--SQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGT 118 (395)
T ss_pred CceEEEEECC-CCcEEEEEEcCCCCCC-CC--CCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCccccccccc
Confidence 5678888898 9988777766543211 11 123477999999987666554332 22358899999999999997
Q ss_pred C
Q 008927 536 T 536 (548)
Q Consensus 536 t 536 (548)
.
T Consensus 119 ~ 119 (395)
T PLN02872 119 R 119 (395)
T ss_pred c
Confidence 5
No 146
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=96.17 E-value=0.0085 Score=62.28 Aligned_cols=53 Identities=30% Similarity=0.386 Sum_probs=37.5
Q ss_pred EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccC--hHHHHHHhcC-cEEEEeCCCC
Q 008927 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN--LSIQYWTSRG-WAFVDVNYGG 534 (548)
Q Consensus 475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~--~~~Q~~asrG-yaVl~~NyRG 534 (548)
++--++.|. + +.++.|+||+||||=--. +.+.. ..-+.||.+| ++|+.+|||=
T Consensus 80 L~LNIwaP~---~---~a~~~PVmV~IHGG~y~~-Gs~s~~~ydgs~La~~g~vVvVSvNYRL 135 (491)
T COG2272 80 LYLNIWAPE---V---PAEKLPVMVYIHGGGYIM-GSGSEPLYDGSALAARGDVVVVSVNYRL 135 (491)
T ss_pred eeEEeeccC---C---CCCCCcEEEEEecccccc-CCCcccccChHHHHhcCCEEEEEeCccc
Confidence 566677785 1 245689999999994321 22222 3457899999 9999999993
No 147
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.05 E-value=3.9 Score=46.99 Aligned_cols=147 Identities=5% Similarity=0.011 Sum_probs=80.5
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCC-CCCEEEEEEeccCCCCCCceeEEEEE
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAI 226 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~Sp-DG~~i~~v~~~~~~~~~~~~~~l~~i 226 (548)
.|.+..+.++.+...++.|.+.++.+ ++. ..+... ...+....|+| |+..|+....+ ..|.++
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~--~~~~~~~~~H----~~~V~~l~~~p~~~~~L~Sgs~D---------g~v~iW 603 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVAR--SQLVTEMKEH----EKRVWSIDYSSADPTLLASGSDD---------GSVKLW 603 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCC--CeEEEEecCC----CCCEEEEEEcCCCCCEEEEEcCC---------CEEEEE
Confidence 45554444555665677777778765 332 333322 22456778987 66665554322 367888
Q ss_pred ECCCCCccCcEEeeecCCceeeeEE-CCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcC
Q 008927 227 ALNGQNIQEPKVLVSGSDFYAFPRM-DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (548)
Q Consensus 227 dl~~g~~~~~~~L~~~~~~~~~p~~-SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~ 305 (548)
|+.++.. ...+. .........| +++|+.|+.... ...|++.|+..... ....+.+.. ..+..
T Consensus 604 d~~~~~~--~~~~~-~~~~v~~v~~~~~~g~~latgs~--------dg~I~iwD~~~~~~--~~~~~~~h~----~~V~~ 666 (793)
T PLN00181 604 SINQGVS--IGTIK-TKANICCVQFPSESGRSLAFGSA--------DHKVYYYDLRNPKL--PLCTMIGHS----KTVSY 666 (793)
T ss_pred ECCCCcE--EEEEe-cCCCeEEEEEeCCCCCEEEEEeC--------CCeEEEEECCCCCc--cceEecCCC----CCEEE
Confidence 8887751 22232 2223344456 567888875442 34789999874221 122333332 35667
Q ss_pred ceECcCCcEEEEEeCCCCeeeEEE
Q 008927 306 PKWSSKGELFFVTDRKNGFWNLHK 329 (548)
Q Consensus 306 ~~wspDG~L~~~sd~~~g~~~Ly~ 329 (548)
..|. |+..++.... ++.-.||-
T Consensus 667 v~f~-~~~~lvs~s~-D~~ikiWd 688 (793)
T PLN00181 667 VRFV-DSSTLVSSST-DNTLKLWD 688 (793)
T ss_pred EEEe-CCCEEEEEEC-CCEEEEEe
Confidence 7886 6664444433 45444443
No 148
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.04 E-value=1.7 Score=42.67 Aligned_cols=155 Identities=13% Similarity=0.059 Sum_probs=83.2
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (548)
Q Consensus 150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~ 229 (548)
|++-|..|+-. -.+|+|...|+++- +-.+-|+..- .-+..+.||+||+.|+-.+.+ +.+-.+|+.
T Consensus 31 Fs~~G~~lAvG-c~nG~vvI~D~~T~-~iar~lsaH~----~pi~sl~WS~dgr~LltsS~D---------~si~lwDl~ 95 (405)
T KOG1273|consen 31 FSRWGDYLAVG-CANGRVVIYDFDTF-RIARMLSAHV----RPITSLCWSRDGRKLLTSSRD---------WSIKLWDLL 95 (405)
T ss_pred eccCcceeeee-ccCCcEEEEEcccc-chhhhhhccc----cceeEEEecCCCCEeeeecCC---------ceeEEEecc
Confidence 44556555543 34678888888762 3334454431 236678999999998775433 468888998
Q ss_pred CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCC-cccCCcCceE
Q 008927 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT-IVESPTEPKW 308 (548)
Q Consensus 230 ~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~-~~~~~~~~~w 308 (548)
.|.. .+++.-. .-+....|.|-.+..+.+..- ...-++.++.. +. .+++...+.. .......-.|
T Consensus 96 ~gs~--l~rirf~-spv~~~q~hp~k~n~~va~~~-------~~sp~vi~~s~-~~---h~~Lp~d~d~dln~sas~~~f 161 (405)
T KOG1273|consen 96 KGSP--LKRIRFD-SPVWGAQWHPRKRNKCVATIM-------EESPVVIDFSD-PK---HSVLPKDDDGDLNSSASHGVF 161 (405)
T ss_pred CCCc--eeEEEcc-CccceeeeccccCCeEEEEEe-------cCCcEEEEecC-Cc---eeeccCCCccccccccccccc
Confidence 8862 3444322 224455677755544433311 12245666653 32 3455443311 0011122247
Q ss_pred CcCCcEEEEEeCCCCeeeEEEEeccCCe
Q 008927 309 SSKGELFFVTDRKNGFWNLHKWIESNNE 336 (548)
Q Consensus 309 spDG~L~~~sd~~~g~~~Ly~~d~~~g~ 336 (548)
.+-|+.++..+. -|+ |..++.++-+
T Consensus 162 dr~g~yIitGts-KGk--llv~~a~t~e 186 (405)
T KOG1273|consen 162 DRRGKYIITGTS-KGK--LLVYDAETLE 186 (405)
T ss_pred cCCCCEEEEecC-cce--EEEEecchhe
Confidence 788885555443 454 4445554544
No 149
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.02 E-value=0.33 Score=47.04 Aligned_cols=205 Identities=18% Similarity=0.274 Sum_probs=100.6
Q ss_pred HHhcCCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCC-cccCCCCCCccccceeeCCeeeEEECCEEEEE
Q 008927 83 VVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP-SDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS 160 (548)
Q Consensus 83 ~l~~~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~-~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~ 160 (548)
.|......++.+.+.| .+.+|.|.+.+ ..|+..+.. |+. +.+.-.++ ++|-|-.| ..++.++..
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~-----~~i~els~~--G~vlr~i~l~g~------~D~EgI~y-~g~~~~vl~ 81 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEP-----GEIYELSLD--GKVLRRIPLDGF------GDYEGITY-LGNGRYVLS 81 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTT-----TEEEEEETT----EEEEEE-SS-------SSEEEEEE--STTEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCC-----CEEEEEcCC--CCEEEEEeCCCC------CCceeEEE-ECCCEEEEE
Confidence 4444445688999999 88899888543 236666655 333 22211111 12333334 245577777
Q ss_pred eCCCCeEEEEeCCCCCCC--c---eecCCCC-CCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC--CCCC
Q 008927 161 NYKDQRLYKHSIDSKDSS--P---LPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL--NGQN 232 (548)
Q Consensus 161 ~~~~~~Ly~~~~~~~~~~--~---~~lT~~~-~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl--~~g~ 232 (548)
++++++|+.+.++..... . +.++-.. ......+-.++|+|.+++++.+.|+.. ..||.++. ....
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-------~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-------KRLYEVNGFPGGFD 154 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-------EEEEEEESTT-SS-
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-------hhhEEEccccCccc
Confidence 878899999888432011 1 2232111 001234667899999999888766532 46888887 2222
Q ss_pred ccCcEEeee-----cC---CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCC---Cccc
Q 008927 233 IQEPKVLVS-----GS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP---TIVE 301 (548)
Q Consensus 233 ~~~~~~L~~-----~~---~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~---~~~~ 301 (548)
...... .. .-.+...+.|....|..++ +. ...|.++|. +|++.....+..+.. ....
T Consensus 155 ---~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS-~e------s~~l~~~d~--~G~~~~~~~L~~g~~gl~~~~~ 222 (248)
T PF06977_consen 155 ---LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILS-DE------SRLLLELDR--QGRVVSSLSLDRGFHGLSKDIP 222 (248)
T ss_dssp ----EEEE-HHHH-HT--SS---EEEEETTTTEEEEEE-TT------TTEEEEE-T--T--EEEEEE-STTGGG-SS---
T ss_pred ---eeeccccccccccceeccccceEEcCCCCeEEEEE-CC------CCeEEEECC--CCCEEEEEEeCCcccCcccccC
Confidence 111110 01 1135567788777777666 21 346777774 465434444444210 0001
Q ss_pred CCcCceECcCCcEEEEEeC
Q 008927 302 SPTEPKWSSKGELFFVTDR 320 (548)
Q Consensus 302 ~~~~~~wspDG~L~~~sd~ 320 (548)
.....++.+||+||++++.
T Consensus 223 QpEGIa~d~~G~LYIvsEp 241 (248)
T PF06977_consen 223 QPEGIAFDPDGNLYIVSEP 241 (248)
T ss_dssp SEEEEEE-TT--EEEEETT
T ss_pred CccEEEECCCCCEEEEcCC
Confidence 2344689999999998875
No 150
>PRK13613 lipoprotein LpqB; Provisional
Probab=95.96 E-value=0.31 Score=53.37 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=96.1
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCC----ceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeE-E
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE-I 223 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~----~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~-l 223 (548)
+.+.++..+++.......||+=++.++ ++ .+.+... .++..|.|+++| +|..+ +.... ..+ |
T Consensus 369 avS~~g~~~A~v~~~~~~l~vg~~~~~-~~~~~~~~~~~~~-----~~Lt~PS~d~~g-~vWtv-d~~~~-----~~~vl 435 (599)
T PRK13613 369 AVSRDESRAAGISADGDSVYVGSLTPG-ASIGVHSWGVTAD-----GRLTSPSWDGRG-DLWVV-DRDPA-----DPRLL 435 (599)
T ss_pred EEcCCCceEEEEcCCCcEEEEeccCCC-Cccccccceeecc-----CcccCCcCcCCC-CEEEe-cCCCC-----CceEE
Confidence 455678889999755557777665442 33 2333332 357888999988 56554 22111 123 3
Q ss_pred EEEECCCCCccCcEEeee--cCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC--CCc--eeeeEEEcCCC
Q 008927 224 VAIALNGQNIQEPKVLVS--GSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGD--VYKRVCVAGFD 296 (548)
Q Consensus 224 ~~idl~~g~~~~~~~L~~--~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~--~g~--~~~~~~l~~~~ 296 (548)
.++. .+|+ ...+.. -.+ .+...++|+||-|+|.+.... ...+|++.-+.. +|. +.+.+.+....
T Consensus 436 ~v~~-~~G~---~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~-----g~~~v~va~V~R~~~G~~~l~~~~~l~~~l 506 (599)
T PRK13613 436 WLLQ-GDGE---PVEVRTPELDGHRVVAVRVARDGVRVALIVEKD-----GRRSLQIGRIVRDAKAVVSVEEFRSLAPEL 506 (599)
T ss_pred EEEc-CCCc---EEEeeccccCCCEeEEEEECCCccEEEEEEecC-----CCcEEEEEEEEeCCCCcEEeeccEEeccCC
Confidence 3443 3555 332321 112 467889999999999987332 246788877654 342 22233333322
Q ss_pred CCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCe
Q 008927 297 PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE 336 (548)
Q Consensus 297 ~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~ 336 (548)
..+....|..++.|+++.....+...++++++++..
T Consensus 507 ----~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~ 542 (599)
T PRK13613 507 ----EDVTDMSWAGDSQLVVLGREEGGVQQARYVQVDGST 542 (599)
T ss_pred ----CccceeEEcCCCEEEEEeccCCCCcceEEEecCCcC
Confidence 346788999999887765332456778888886554
No 151
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=95.93 E-value=1.2 Score=42.61 Aligned_cols=136 Identities=7% Similarity=-0.076 Sum_probs=72.1
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
.|.+...-++++...+..+-+.|.-. +++..-+... .......|||||+.+++...+ ..|-.+|.
T Consensus 71 ~w~~~~~d~~atas~dk~ir~wd~r~--~k~~~~i~~~----~eni~i~wsp~g~~~~~~~kd---------D~it~id~ 135 (313)
T KOG1407|consen 71 CWDPKHPDLFATASGDKTIRIWDIRS--GKCTARIETK----GENINITWSPDGEYIAVGNKD---------DRITFIDA 135 (313)
T ss_pred eeCCCCCcceEEecCCceEEEEEecc--CcEEEEeecc----CcceEEEEcCCCCEEEEecCc---------ccEEEEEe
Confidence 45554444666655555555555554 5555444331 223445799999998886322 36888888
Q ss_pred CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (548)
Q Consensus 229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w 308 (548)
.+-+ ...-.+..-+.....|+-++. +.|+... ...+-++.... ++....+...+ ....-..|
T Consensus 136 r~~~---~~~~~~~~~e~ne~~w~~~nd-~Fflt~G-------lG~v~ILsyps---Lkpv~si~AH~----snCicI~f 197 (313)
T KOG1407|consen 136 RTYK---IVNEEQFKFEVNEISWNNSND-LFFLTNG-------LGCVEILSYPS---LKPVQSIKAHP----SNCICIEF 197 (313)
T ss_pred cccc---eeehhcccceeeeeeecCCCC-EEEEecC-------CceEEEEeccc---cccccccccCC----cceEEEEE
Confidence 7654 211122222334556774444 6666521 23444444432 22233343333 33455789
Q ss_pred CcCCcEEEE
Q 008927 309 SSKGELFFV 317 (548)
Q Consensus 309 spDG~L~~~ 317 (548)
+|||+.+.+
T Consensus 198 ~p~GryfA~ 206 (313)
T KOG1407|consen 198 DPDGRYFAT 206 (313)
T ss_pred CCCCceEee
Confidence 999984433
No 152
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=95.91 E-value=1.8 Score=42.01 Aligned_cols=198 Identities=12% Similarity=0.070 Sum_probs=110.3
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCC
Q 008927 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (548)
Q Consensus 192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~ 271 (548)
.+.++.|++|+++|+-.+.+ ..|.++|.-+.+. ...|.-...++..-++||.|+.+|.-..+
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqD---------GklIvWDs~TtnK--~haipl~s~WVMtCA~sPSg~~VAcGGLd------- 118 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQD---------GKLIVWDSFTTNK--VHAIPLPSSWVMTCAYSPSGNFVACGGLD------- 118 (343)
T ss_pred ceeeeEecCCcCeEEeeccC---------CeEEEEEcccccc--eeEEecCceeEEEEEECCCCCeEEecCcC-------
Confidence 46678899999998775443 3688899988762 44555555577888999999988854322
Q ss_pred CceEEEEEecC---CCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeeccc-cccc
Q 008927 272 KAELWVGYISE---NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEF 347 (548)
Q Consensus 272 ~~~L~v~~~~~---~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~-~~d~ 347 (548)
+..-++++.. +|.....+.+.+.. ..++-..|.+|+.|+-. +|-....++|+++|+....... ..|+
T Consensus 119 -N~Csiy~ls~~d~~g~~~v~r~l~gHt----gylScC~f~dD~~ilT~----SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 119 -NKCSIYPLSTRDAEGNVRVSRELAGHT----GYLSCCRFLDDNHILTG----SGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred -ceeEEEecccccccccceeeeeecCcc----ceeEEEEEcCCCceEec----CCCceEEEEEcccceEEEEecCCcccE
Confidence 2344455542 23222345566654 45666788888876533 3444677788888876554421 1121
Q ss_pred CCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE-eecCCCceeEee--eecCCEEEEEEecCCCCC
Q 008927 348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPS 424 (548)
Q Consensus 348 ~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~-~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~ 424 (548)
- .+++.| ++++.++ +..-+.... +.|+..+.-. .......++..+ -++|.. |...+.+..
T Consensus 190 ~---------slsl~p--~~~ntFv-Sg~cD~~ak--lWD~R~~~c~qtF~ghesDINsv~ffP~G~a--fatGSDD~t- 252 (343)
T KOG0286|consen 190 M---------SLSLSP--SDGNTFV-SGGCDKSAK--LWDVRSGQCVQTFEGHESDINSVRFFPSGDA--FATGSDDAT- 252 (343)
T ss_pred E---------EEecCC--CCCCeEE-eccccccee--eeeccCcceeEeecccccccceEEEccCCCe--eeecCCCce-
Confidence 1 122332 1344433 333344444 4466666433 333334456555 355543 333333333
Q ss_pred eEEEEEcCCC
Q 008927 425 SVAKVTLDDH 434 (548)
Q Consensus 425 ~l~~~d~~~~ 434 (548)
.-.+|+...
T Consensus 253 -cRlyDlRaD 261 (343)
T KOG0286|consen 253 -CRLYDLRAD 261 (343)
T ss_pred -eEEEeecCC
Confidence 344565443
No 153
>PRK13614 lipoprotein LpqB; Provisional
Probab=95.80 E-value=0.37 Score=52.31 Aligned_cols=164 Identities=17% Similarity=0.129 Sum_probs=95.6
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
+.+.++..++|.......||..... +..+.+... ..+..|.|+++| +|..+ .+.. ...|.++.-
T Consensus 349 avS~~g~~~A~~~~~~~~l~~~~~g---~~~~~~~~g-----~~Lt~PS~d~~g-~vWtv-~~g~------~~~vv~~~~ 412 (573)
T PRK13614 349 AESPVSQTVAFLNGSRTTLYTVSPG---QPARALTSG-----STLTRPSFSPQD-WVWTA-GPGG------NGRIVAYRP 412 (573)
T ss_pred eecCCCceEEEecCCCcEEEEecCC---CcceeeecC-----CCccCCcccCCC-CEEEe-eCCC------CceEEEEec
Confidence 4556788899987544588887763 556665543 257788999998 66554 3321 125666554
Q ss_pred CCC-CccCcE--Eee-e-cC-CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC--CCc---eeeeEEEcCCCC
Q 008927 229 NGQ-NIQEPK--VLV-S-GS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGD---VYKRVCVAGFDP 297 (548)
Q Consensus 229 ~~g-~~~~~~--~L~-~-~~-~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~--~g~---~~~~~~l~~~~~ 297 (548)
.+. +..... .+. . -. ..+...++|+||-++|.+.... ...+|++.-+.. +|. +.+.+.+.. .
T Consensus 413 ~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~-----g~~~V~va~V~R~~~G~P~~L~~~~~~~~-~- 485 (573)
T PRK13614 413 TGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQN-----GKSRVQVAGIVRNEDGTPRELTAPITLAA-D- 485 (573)
T ss_pred CCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeC-----CccEEEEEEEEeCCCCCeEEccCceeccc-C-
Confidence 321 100001 111 1 11 1267889999999999887432 245688876653 343 111112211 1
Q ss_pred CcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeE
Q 008927 298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL 338 (548)
Q Consensus 298 ~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~ 338 (548)
..+....|..|+.|+.+.....+....+++.+..|..+
T Consensus 486 ---~~~~sl~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~~~ 523 (573)
T PRK13614 486 ---SDADTGAWVGDSTVVVTKASATSNVVPELLSVDAGQPQ 523 (573)
T ss_pred ---CCcceeEEcCCCEEEEEeccCCCcceEEEEEeCCCCcc
Confidence 35677899999987777543245566777777555544
No 154
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=1.7 Score=46.04 Aligned_cols=225 Identities=7% Similarity=0.020 Sum_probs=116.2
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
.|+++|..|+-.. .++.+.+.|.... ...+.+... ...+++.++|. +..+.....+ ..|...|+
T Consensus 224 ~ws~~G~~LavG~-~~g~v~iwD~~~~-k~~~~~~~~---h~~rvg~laW~--~~~lssGsr~---------~~I~~~dv 287 (484)
T KOG0305|consen 224 KWSPDGSHLAVGT-SDGTVQIWDVKEQ-KKTRTLRGS---HASRVGSLAWN--SSVLSSGSRD---------GKILNHDV 287 (484)
T ss_pred EECCCCCEEEEee-cCCeEEEEehhhc-cccccccCC---cCceeEEEecc--CceEEEecCC---------CcEEEEEE
Confidence 6777888777653 4567777777542 233333331 13578888898 2333332211 35667777
Q ss_pred CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (548)
Q Consensus 229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w 308 (548)
...+.. .+.+......+....|++||+++| .. . ..+.+++.|..... ....+.... ..+-...|
T Consensus 288 R~~~~~-~~~~~~H~qeVCgLkws~d~~~lA-SG---g----nDN~~~Iwd~~~~~---p~~~~~~H~----aAVKA~aw 351 (484)
T KOG0305|consen 288 RISQHV-VSTLQGHRQEVCGLKWSPDGNQLA-SG---G----NDNVVFIWDGLSPE---PKFTFTEHT----AAVKALAW 351 (484)
T ss_pred ecchhh-hhhhhcccceeeeeEECCCCCeec-cC---C----CccceEeccCCCcc---ccEEEeccc----eeeeEeee
Confidence 665411 122222333467789999999987 22 1 13567777764222 233444433 56778899
Q ss_pred CcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEE-eCCeEEEEEE
Q 008927 309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGIL 386 (548)
Q Consensus 309 spDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~-~~g~~~L~~~ 386 (548)
+|=-. |+.+.-. ..-..|..+|..+|+.......... ...+.|++ ..+.|+.+.- ....-.||.+
T Consensus 352 cP~q~~lLAsGGG-s~D~~i~fwn~~~g~~i~~vdtgsQ---------VcsL~Wsk---~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 352 CPWQSGLLATGGG-SADRCIKFWNTNTGARIDSVDTGSQ---------VCSLIWSK---KYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred CCCccCceEEcCC-CcccEEEEEEcCCCcEecccccCCc---------eeeEEEcC---CCCEEEEecCCCCCcEEEEec
Confidence 99755 7666432 3334577777767664332211111 12345554 4556654432 2233445554
Q ss_pred ECCCCceEeecCCCceeEee--eecCCEEEEEEec
Q 008927 387 DDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGAS 419 (548)
Q Consensus 387 dl~~g~~~~l~~~~~~~~~~--s~d~~~l~~~~ss 419 (548)
.. -..+..+...-.-+-.+ ++|+..++..+..
T Consensus 419 ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 419 PS-MKLVAELLGHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred cc-cceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence 32 11222332222223322 6777766555443
No 155
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.75 E-value=5 Score=46.69 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=59.8
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCC--CCCCceecCCCCC----CCCceecceeeCCCCCEEEEEEeccCCCCCCceeE
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDS--KDSSPLPITPDYG----EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~--~~~~~~~lT~~~~----~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~ 222 (548)
.|.+..+.++|.......-+.+.++. .+.+.+.+..... .....+-++.+-+|...|+++.+. .+
T Consensus 28 ~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~---------Gd 98 (928)
T PF04762_consen 28 AFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALAS---------GD 98 (928)
T ss_pred EEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECC---------ce
Confidence 55566677888765433213333321 0122233333210 012345566777887777666443 47
Q ss_pred EEEE----ECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEE
Q 008927 223 IVAI----ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE 262 (548)
Q Consensus 223 l~~i----dl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~ 262 (548)
|..+ +..+.. ...+..-+......+||||+..|+++.
T Consensus 99 i~~~~~~~~~~~~~---~E~VG~vd~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 99 IILVREDPDPDEDE---IEIVGSVDSGILAASWSPDEELLALVT 139 (928)
T ss_pred EEEEEccCCCCCce---eEEEEEEcCcEEEEEECCCcCEEEEEe
Confidence 8888 666665 666665555677789999999999876
No 156
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=95.74 E-value=0.49 Score=45.09 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=67.0
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCC
Q 008927 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (548)
Q Consensus 193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~ 272 (548)
..++.|+|...-++++.... ..|-++|...++ ...-++...--..-.|||||+++++... .
T Consensus 67 vdql~w~~~~~d~~atas~d--------k~ir~wd~r~~k---~~~~i~~~~eni~i~wsp~g~~~~~~~k--------d 127 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGD--------KTIRIWDIRSGK---CTARIETKGENINITWSPDGEYIAVGNK--------D 127 (313)
T ss_pred hhhheeCCCCCcceEEecCC--------ceEEEEEeccCc---EEEEeeccCcceEEEEcCCCCEEEEecC--------c
Confidence 34567888665555553321 257778888887 4433332222234579999999996642 2
Q ss_pred ceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEe
Q 008927 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWI 331 (548)
Q Consensus 273 ~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d 331 (548)
..|-.+|... - +.+...... ..+.+..|.-++.++|+++- .|.-+|..+.
T Consensus 128 D~it~id~r~-~-----~~~~~~~~~--~e~ne~~w~~~nd~Fflt~G-lG~v~ILsyp 177 (313)
T KOG1407|consen 128 DRITFIDART-Y-----KIVNEEQFK--FEVNEISWNNSNDLFFLTNG-LGCVEILSYP 177 (313)
T ss_pred ccEEEEEecc-c-----ceeehhccc--ceeeeeeecCCCCEEEEecC-CceEEEEecc
Confidence 3577777653 1 112111101 23567789866669888876 7888888775
No 157
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=95.68 E-value=0.022 Score=57.28 Aligned_cols=72 Identities=18% Similarity=0.119 Sum_probs=52.7
Q ss_pred eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEcc-CccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG-GPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537 (548)
Q Consensus 462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHG-GP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG 537 (548)
..+++.....+.++.-++|.|....... ...++|+||+.|| ||. ..+|.+-.+.||+.||+|..+++-||+-
T Consensus 39 ~~i~~~~~~r~~~~~v~~~~p~~~~~~~-~~~~~PlvvlshG~Gs~---~~~f~~~A~~lAs~Gf~Va~~~hpgs~~ 111 (365)
T COG4188 39 VTITLNDPQRDRERPVDLRLPQGGTGTV-ALYLLPLVVLSHGSGSY---VTGFAWLAEHLASYGFVVAAPDHPGSNA 111 (365)
T ss_pred EEEeccCcccCCccccceeccCCCcccc-ccCcCCeEEecCCCCCC---ccchhhhHHHHhhCceEEEeccCCCccc
Confidence 3455554313567888888886422110 1247899999999 665 6678899999999999999999999864
No 158
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.67 E-value=0.17 Score=54.74 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=79.0
Q ss_pred EEEEEeC---CCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927 156 TVIFSNY---KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (548)
Q Consensus 156 ~i~F~~~---~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~ 232 (548)
-.||... +..+||..+- ..|.+|..+. -....-..|.|....++--+.+ ..+-.+|+.+|.
T Consensus 505 GyYFatas~D~tArLWs~d~----~~PlRifagh---lsDV~cv~FHPNs~Y~aTGSsD---------~tVRlWDv~~G~ 568 (707)
T KOG0263|consen 505 GYYFATASHDQTARLWSTDH----NKPLRIFAGH---LSDVDCVSFHPNSNYVATGSSD---------RTVRLWDVSTGN 568 (707)
T ss_pred ceEEEecCCCceeeeeeccc----CCchhhhccc---ccccceEEECCcccccccCCCC---------ceEEEEEcCCCc
Confidence 4677753 2348998775 3455554431 0112225689988765443222 245666888887
Q ss_pred ccCcEEeeecC-CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcC
Q 008927 233 IQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (548)
Q Consensus 233 ~~~~~~L~~~~-~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspD 311 (548)
..++..|. +-+...++||+|++|+--. +...|.+.|+.. |.+ ...+.+.. ..+....||.|
T Consensus 569 ---~VRiF~GH~~~V~al~~Sp~Gr~LaSg~--------ed~~I~iWDl~~-~~~--v~~l~~Ht----~ti~SlsFS~d 630 (707)
T KOG0263|consen 569 ---SVRIFTGHKGPVTALAFSPCGRYLASGD--------EDGLIKIWDLAN-GSL--VKQLKGHT----GTIYSLSFSRD 630 (707)
T ss_pred ---EEEEecCCCCceEEEEEcCCCceEeecc--------cCCcEEEEEcCC-Ccc--hhhhhccc----CceeEEEEecC
Confidence 66666553 3477889999999998322 235688889874 542 22233323 46778999999
Q ss_pred CcEEEEE
Q 008927 312 GELFFVT 318 (548)
Q Consensus 312 G~L~~~s 318 (548)
|.++.+.
T Consensus 631 g~vLasg 637 (707)
T KOG0263|consen 631 GNVLASG 637 (707)
T ss_pred CCEEEec
Confidence 9865554
No 159
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=95.64 E-value=0.11 Score=54.08 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=45.5
Q ss_pred eeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEE
Q 008927 239 LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT 318 (548)
Q Consensus 239 L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~s 318 (548)
+.-+.+......|||||++||.++. ..-|.|++.+. -+ ...+-. .++....-..||||||++++-
T Consensus 286 w~~~~g~in~f~FS~DG~~LA~VSq--------DGfLRvF~fdt-~e---Llg~mk---SYFGGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 286 WHIGEGSINEFAFSPDGKYLATVSQ--------DGFLRIFDFDT-QE---LLGVMK---SYFGGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred eEeccccccceeEcCCCceEEEEec--------CceEEEeeccH-HH---HHHHHH---hhccceEEEEEcCCccEEEec
Confidence 3333344556789999999998883 24688888863 22 111111 111334557899999966664
Q ss_pred eCCCCeeeEEEE
Q 008927 319 DRKNGFWNLHKW 330 (548)
Q Consensus 319 d~~~g~~~Ly~~ 330 (548)
-. ++.-.+|.+
T Consensus 351 GE-DDLVtVwSf 361 (636)
T KOG2394|consen 351 GE-DDLVTVWSF 361 (636)
T ss_pred CC-cceEEEEEe
Confidence 44 444555554
No 160
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=95.55 E-value=2.2 Score=45.02 Aligned_cols=149 Identities=11% Similarity=0.113 Sum_probs=82.4
Q ss_pred ceeeCCCCCEEEEEEeccCCC---CCCceeEEEEEECCCCCccCcE-EeeecCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927 195 DGIFDPRFNRYVTVREDRRQD---ALNSTTEIVAIALNGQNIQEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (548)
Q Consensus 195 ~~~~SpDG~~i~~v~~~~~~~---~~~~~~~l~~idl~~g~~~~~~-~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~ 270 (548)
.+.|.+-|..|+++....-|. .-.....||.++..+.. .. .|. ..+-+....|||+|+..+.+. .-||
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s---~~V~L~-k~GPVhdv~W~~s~~EF~Vvy---GfMP- 293 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES---VSVPLL-KEGPVHDVTWSPSGREFAVVY---GFMP- 293 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce---EEEecC-CCCCceEEEECCCCCEEEEEE---eccc-
Confidence 467999999887765432111 11124689999988433 22 222 223355679999999888554 2354
Q ss_pred CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCC
Q 008927 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP 350 (548)
Q Consensus 271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p 350 (548)
..+-+.+++ +. .+..+.. +......|+|.|+|+++.--++=..++-.+|..+ .+.|...++
T Consensus 294 --Akvtifnlr--~~--~v~df~e------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a----- 354 (566)
T KOG2315|consen 294 --AKVTIFNLR--GK--PVFDFPE------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKA----- 354 (566)
T ss_pred --ceEEEEcCC--CC--EeEeCCC------CCccceEECCCCCEEEEeecCCCCCceEEEeccc--hhhcccccc-----
Confidence 457777876 32 1222222 2345678999999666653322122344556544 233332111
Q ss_pred cccccCcceeeeeecCCCCEEEEEEE
Q 008927 351 LWVFGINSYEIIQSHGEKNLIACSYR 376 (548)
Q Consensus 351 ~w~~~~~~~~~~~~~~d~~~l~~~~~ 376 (548)
.+...+.|.| ||.+|+...+
T Consensus 355 ---~~tt~~eW~P---dGe~flTATT 374 (566)
T KOG2315|consen 355 ---ANTTVFEWSP---DGEYFLTATT 374 (566)
T ss_pred ---CCceEEEEcC---CCcEEEEEec
Confidence 1223356776 7887775543
No 161
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=95.55 E-value=0.11 Score=50.74 Aligned_cols=139 Identities=9% Similarity=0.026 Sum_probs=83.9
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
.|+|+|+.|+-.+ +.+|.+-|..+ -+..+|-.-- -.+.-..|+.|.-.|+++.... .-+.++++
T Consensus 15 ~fSp~g~yiAs~~--~yrlviRd~~t--lq~~qlf~cl----dki~yieW~ads~~ilC~~yk~--------~~vqvwsl 78 (447)
T KOG4497|consen 15 SFSPCGNYIASLS--RYRLVIRDSET--LQLHQLFLCL----DKIVYIEWKADSCHILCVAYKD--------PKVQVWSL 78 (447)
T ss_pred eECCCCCeeeeee--eeEEEEeccch--hhHHHHHHHH----HHhhheeeeccceeeeeeeecc--------ceEEEEEe
Confidence 5788899888776 44666666544 3333332110 1234457999999999986543 34667777
Q ss_pred CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (548)
Q Consensus 229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w 308 (548)
...+. .-.|.++.+..+..+|||||+.|.-.+ .. ..+|-+-.+.+. + -..+.... ..+....|
T Consensus 79 ~Qpew--~ckIdeg~agls~~~WSPdgrhiL~ts-eF------~lriTVWSL~t~-~---~~~~~~pK----~~~kg~~f 141 (447)
T KOG4497|consen 79 VQPEW--YCKIDEGQAGLSSISWSPDGRHILLTS-EF------DLRITVWSLNTQ-K---GYLLPHPK----TNVKGYAF 141 (447)
T ss_pred eccee--EEEeccCCCcceeeeECCCcceEeeee-cc------eeEEEEEEeccc-e---eEEecccc----cCceeEEE
Confidence 66542 234666777777889999999887443 11 245555566532 1 22233222 44567889
Q ss_pred CcCCcEEEE-EeC
Q 008927 309 SSKGELFFV-TDR 320 (548)
Q Consensus 309 spDG~L~~~-sd~ 320 (548)
.|||++..+ +.+
T Consensus 142 ~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 142 HPDGQFCAILSRR 154 (447)
T ss_pred CCCCceeeeeecc
Confidence 999994444 443
No 162
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=95.55 E-value=0.67 Score=43.91 Aligned_cols=146 Identities=10% Similarity=0.038 Sum_probs=86.4
Q ss_pred eEEECCEEEEEe-CCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 150 FRIFGDTVIFSN-YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 150 ~~~~~~~i~F~~-~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
|+-.+..|+=+. +++=+||-.... .+.+.|... ....++.+|+||+.|... .. ..|--+|.
T Consensus 151 wc~eD~~iLSSadd~tVRLWD~rTg---t~v~sL~~~-----s~VtSlEvs~dG~ilTia-~g---------ssV~Fwda 212 (334)
T KOG0278|consen 151 WCHEDKCILSSADDKTVRLWDHRTG---TEVQSLEFN-----SPVTSLEVSQDGRILTIA-YG---------SSVKFWDA 212 (334)
T ss_pred EeccCceEEeeccCCceEEEEeccC---cEEEEEecC-----CCCcceeeccCCCEEEEe-cC---------ceeEEecc
Confidence 555555555533 223377755432 345555332 235677899999876442 21 34556676
Q ss_pred CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEE-cCCCCCcccCCcCce
Q 008927 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-AGFDPTIVESPTEPK 307 (548)
Q Consensus 229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l-~~~~~~~~~~~~~~~ 307 (548)
.+-. .-.-...+-.+....++|+-. .|+.-. +...+|.+|..+ |+ +.-+. .+.. ..+...+
T Consensus 213 ksf~---~lKs~k~P~nV~SASL~P~k~--~fVaGg------ed~~~~kfDy~T-ge--Ei~~~nkgh~----gpVhcVr 274 (334)
T KOG0278|consen 213 KSFG---LLKSYKMPCNVESASLHPKKE--FFVAGG------EDFKVYKFDYNT-GE--EIGSYNKGHF----GPVHCVR 274 (334)
T ss_pred cccc---ceeeccCccccccccccCCCc--eEEecC------cceEEEEEeccC-Cc--eeeecccCCC----CceEEEE
Confidence 6643 222223333456678999864 345522 135688889885 43 23332 3332 5678889
Q ss_pred ECcCCcEEEEEeCCCCeeeEEEEec
Q 008927 308 WSSKGELFFVTDRKNGFWNLHKWIE 332 (548)
Q Consensus 308 wspDG~L~~~sd~~~g~~~Ly~~d~ 332 (548)
|||||++|..-.. +|.-.||...+
T Consensus 275 FSPdGE~yAsGSE-DGTirlWQt~~ 298 (334)
T KOG0278|consen 275 FSPDGELYASGSE-DGTIRLWQTTP 298 (334)
T ss_pred ECCCCceeeccCC-CceEEEEEecC
Confidence 9999998887666 78888998875
No 163
>PRK10749 lysophospholipase L2; Provisional
Probab=95.53 E-value=0.03 Score=57.02 Aligned_cols=68 Identities=12% Similarity=0.018 Sum_probs=49.3
Q ss_pred ccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537 (548)
Q Consensus 458 ~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG 537 (548)
+..-|..+|... ||..++...+.|.+ ..|+||++||-.... ..|....+.++++||.|+.+|+||...
T Consensus 27 ~~~~~~~~~~~~-~g~~l~~~~~~~~~---------~~~~vll~HG~~~~~--~~y~~~~~~l~~~g~~v~~~D~~G~G~ 94 (330)
T PRK10749 27 WRQREEAEFTGV-DDIPIRFVRFRAPH---------HDRVVVICPGRIESY--VKYAELAYDLFHLGYDVLIIDHRGQGR 94 (330)
T ss_pred HhhccceEEEcC-CCCEEEEEEccCCC---------CCcEEEEECCccchH--HHHHHHHHHHHHCCCeEEEEcCCCCCC
Confidence 444566778876 99999998887631 237899999974322 234445567899999999999998643
No 164
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=2.7 Score=41.15 Aligned_cols=117 Identities=11% Similarity=0.162 Sum_probs=67.5
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee--cCCceeeeEECCCCCEEEEEEecCCCCC
Q 008927 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (548)
Q Consensus 192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~--~~~~~~~p~~SPDGk~La~~~~~~~~~p 269 (548)
..+++.|+||.+.|+.+ .++ ...|+.++.++.- .+.+.- -.|. ..-.+.-+|+.++ +. ..
T Consensus 87 nvS~LTynp~~rtLFav-~n~-------p~~iVElt~~Gdl---irtiPL~g~~Dp-E~Ieyig~n~fvi-~d--ER--- 148 (316)
T COG3204 87 NVSSLTYNPDTRTLFAV-TNK-------PAAIVELTKEGDL---IRTIPLTGFSDP-ETIEYIGGNQFVI-VD--ER--- 148 (316)
T ss_pred cccceeeCCCcceEEEe-cCC-------CceEEEEecCCce---EEEecccccCCh-hHeEEecCCEEEE-Ee--hh---
Confidence 37889999999987766 443 2579999988765 454431 1111 1224454555332 22 21
Q ss_pred CCCceEEEEEecCCCceee----eEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEe
Q 008927 270 WDKAELWVGYISENGDVYK----RVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI 331 (548)
Q Consensus 270 ~~~~~L~v~~~~~~g~~~~----~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d 331 (548)
...|++..++.+..+-. ...+.... .+.......+|+|..+ |++..++ .--.||.++
T Consensus 149 --~~~l~~~~vd~~t~~~~~~~~~i~L~~~~-k~N~GfEGlA~d~~~~~l~~aKEr--~P~~I~~~~ 210 (316)
T COG3204 149 --DRALYLFTVDADTTVISAKVQKIPLGTTN-KKNKGFEGLAWDPVDHRLFVAKER--NPIGIFEVT 210 (316)
T ss_pred --cceEEEEEEcCCccEEeccceEEeccccC-CCCcCceeeecCCCCceEEEEEcc--CCcEEEEEe
Confidence 45788888876543211 11121111 1113466789999988 8888776 334677776
No 165
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.50 E-value=3.6 Score=42.49 Aligned_cols=233 Identities=9% Similarity=0.023 Sum_probs=108.8
Q ss_pred EECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC
Q 008927 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (548)
Q Consensus 152 ~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~ 230 (548)
..++.|++.. .++.||.++... |+.. +.... .. -...+.. ++..|++... ...|+.+|+++
T Consensus 63 v~~~~v~v~~-~~g~v~a~d~~t--G~~~W~~~~~---~~-~~~~p~v--~~~~v~v~~~---------~g~l~ald~~t 124 (377)
T TIGR03300 63 VAGGKVYAAD-ADGTVVALDAET--GKRLWRVDLD---ER-LSGGVGA--DGGLVFVGTE---------KGEVIALDAED 124 (377)
T ss_pred EECCEEEEEC-CCCeEEEEEccC--CcEeeeecCC---CC-cccceEE--cCCEEEEEcC---------CCEEEEEECCC
Confidence 4566666554 457899999765 4432 11111 01 1123332 4566554322 14799999999
Q ss_pred CCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927 231 QNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (548)
Q Consensus 231 g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws 309 (548)
|+ ...-.. .......|.. ++.+++ +.. ....|+.+|.+. |++. .+.-.............|...
T Consensus 125 G~---~~W~~~~~~~~~~~p~v--~~~~v~-v~~-------~~g~l~a~d~~t-G~~~-W~~~~~~~~~~~~~~~sp~~~ 189 (377)
T TIGR03300 125 GK---ELWRAKLSSEVLSPPLV--ANGLVV-VRT-------NDGRLTALDAAT-GERL-WTYSRVTPALTLRGSASPVIA 189 (377)
T ss_pred Cc---EeeeeccCceeecCCEE--ECCEEE-EEC-------CCCeEEEEEcCC-Ccee-eEEccCCCceeecCCCCCEEE
Confidence 87 322111 1223344555 244444 331 135799999874 5421 111111100000011233332
Q ss_pred cCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccC--CCccccc-CcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927 310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFS--RPLWVFG-INSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (548)
Q Consensus 310 pDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~--~p~w~~~-~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~ 386 (548)
++.+++... .| .|+.+|+++|+..--.......+ ....... ...... .++.||+.. .+ ..|+.+
T Consensus 190 -~~~v~~~~~--~g--~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-----~~~~vy~~~-~~--g~l~a~ 256 (377)
T TIGR03300 190 -DGGVLVGFA--GG--KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-----DGGQVYAVS-YQ--GRVAAL 256 (377)
T ss_pred -CCEEEEECC--CC--EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-----ECCEEEEEE-cC--CEEEEE
Confidence 343443332 23 68889988887532111000000 0000000 000111 355666543 33 368999
Q ss_pred ECCCCceEeecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 387 DDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 387 dl~~g~~~~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
|+++|+..--.. .........+++++|+.. ....|+.+|.++++
T Consensus 257 d~~tG~~~W~~~-~~~~~~p~~~~~~vyv~~----~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 257 DLRSGRVLWKRD-ASSYQGPAVDDNRLYVTD----ADGVVVALDRRSGS 300 (377)
T ss_pred ECCCCcEEEeec-cCCccCceEeCCEEEEEC----CCCeEEEEECCCCc
Confidence 999887542111 111222245677777654 23689999998886
No 166
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=95.47 E-value=1.7 Score=44.79 Aligned_cols=240 Identities=11% Similarity=0.025 Sum_probs=121.2
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
+|.-+|..|+.-+ .+|.+-..+.+| .....|-..+ .-+..+.|.-+|..|+...-+ ..+.++|.
T Consensus 242 ~Wn~~G~~LatG~-~~G~~riw~~~G--~l~~tl~~Hk----gPI~slKWnk~G~yilS~~vD---------~ttilwd~ 305 (524)
T KOG0273|consen 242 DWNNDGTLLATGS-EDGEARIWNKDG--NLISTLGQHK----GPIFSLKWNKKGTYILSGGVD---------GTTILWDA 305 (524)
T ss_pred EecCCCCeEEEee-cCcEEEEEecCc--hhhhhhhccC----CceEEEEEcCCCCEEEeccCC---------ccEEEEec
Confidence 5655677777765 345444445555 4444444432 235567899999988764222 46788899
Q ss_pred CCCCccCcEEeeecCCce-eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927 229 NGQNIQEPKVLVSGSDFY-AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (548)
Q Consensus 229 ~~g~~~~~~~L~~~~~~~-~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ 307 (548)
.+|+ ..+..+....- -...|--+-+ |+... ....|+|..+..++. ...+.+.. ..+....
T Consensus 306 ~~g~---~~q~f~~~s~~~lDVdW~~~~~---F~ts~------td~~i~V~kv~~~~P---~~t~~GH~----g~V~alk 366 (524)
T KOG0273|consen 306 HTGT---VKQQFEFHSAPALDVDWQSNDE---FATSS------TDGCIHVCKVGEDRP---VKTFIGHH----GEVNALK 366 (524)
T ss_pred cCce---EEEeeeeccCCccceEEecCce---EeecC------CCceEEEEEecCCCc---ceeeeccc----CceEEEE
Confidence 8887 55544321110 1123332222 22211 234688888865432 44455544 5688899
Q ss_pred ECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927 308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (548)
Q Consensus 308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d 387 (548)
|.|-|.|+..+.. ++...||.+.- ++....|.....++-...|++... ..+.| ..+.++..+..++. +.++|
T Consensus 367 ~n~tg~LLaS~Sd-D~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~-v~~n~---~~~~~l~sas~dst--V~lwd 438 (524)
T KOG0273|consen 367 WNPTGSLLASCSD-DGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGP-VTSNP---NMNLMLASASFDST--VKLWD 438 (524)
T ss_pred ECCCCceEEEecC-CCeeEeeecCC-CcchhhhhhhccceeeEeecCCCC-ccCCC---cCCceEEEeecCCe--EEEEE
Confidence 9999996665443 56677776532 222222221111222223433111 11111 23334444444444 44557
Q ss_pred CCCCce-EeecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 388 DFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 388 l~~g~~-~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
.+.|.. ..+......+..+ ++++++++. ++ .-..|...+...++
T Consensus 439 v~~gv~i~~f~kH~~pVysvafS~~g~ylAs-Gs---~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 439 VESGVPIHTLMKHQEPVYSVAFSPNGRYLAS-GS---LDGCVHIWSTKTGK 485 (524)
T ss_pred ccCCceeEeeccCCCceEEEEecCCCcEEEe-cC---CCCeeEeccccchh
Confidence 667753 3444333335554 666765532 22 23455555555555
No 167
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.41 E-value=0.75 Score=47.80 Aligned_cols=190 Identities=10% Similarity=0.127 Sum_probs=97.4
Q ss_pred CccCceEEcC-CCc---EEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCC-
Q 008927 89 KRLGGTAVDG-HGR---LIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK- 163 (548)
Q Consensus 89 ~~~~~~~~sp-g~~---i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~- 163 (548)
..+.++.+|| |+. .||.-..-...++..|+.+... ...+..+ -|.+. .+ ..-|.+.|+.|.+.-.+
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~--s~l~tk~--lfk~~-~~----qLkW~~~g~~ll~l~~t~ 244 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN--SVLVTKN--LFKVS-GV----QLKWQVLGKYLLVLVMTH 244 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC--Ceeeeee--eEeec-cc----EEEEecCCceEEEEEEEe
Confidence 4566778888 443 4444211112346667776432 1222211 11211 11 12466677877665322
Q ss_pred ---------CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCcc
Q 008927 164 ---------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (548)
Q Consensus 164 ---------~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~ 234 (548)
...||++++.+ ...+.....+ .-+.++.|.|++++.+.+..-+. ..+-..|+.+.-
T Consensus 245 ~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~----~pVhdf~W~p~S~~F~vi~g~~p-------a~~s~~~lr~Nl-- 309 (561)
T COG5354 245 TKSNKSYFGESNLYLLRITE--RSIPVEKDLK----DPVHDFTWEPLSSRFAVISGYMP-------ASVSVFDLRGNL-- 309 (561)
T ss_pred eecccceeccceEEEEeecc--cccceecccc----ccceeeeecccCCceeEEecccc-------cceeecccccce--
Confidence 24799998875 2222111111 23678899999999877753332 234455655542
Q ss_pred CcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcE
Q 008927 235 EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 314 (548)
Q Consensus 235 ~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L 314 (548)
.-.+-+... ..+.|||.+++|++...+. ...++-+++.. |. ..++.... . ....-..|+|||++
T Consensus 310 -~~~~Pe~~r--NT~~fsp~~r~il~agF~n-----l~gni~i~~~~--~r---f~~~~~~~-~--~n~s~~~wspd~qF 373 (561)
T COG5354 310 -RFYFPEQKR--NTIFFSPHERYILFAGFDN-----LQGNIEIFDPA--GR---FKVAGAFN-G--LNTSYCDWSPDGQF 373 (561)
T ss_pred -EEecCCccc--ccccccCcccEEEEecCCc-----cccceEEeccC--Cc---eEEEEEee-c--CCceEeeccCCceE
Confidence 222222221 2356899999998654322 23456666765 32 22221111 1 22344679999997
Q ss_pred EEEE
Q 008927 315 FFVT 318 (548)
Q Consensus 315 ~~~s 318 (548)
|.+.
T Consensus 374 ~~~~ 377 (561)
T COG5354 374 YDTD 377 (561)
T ss_pred EEec
Confidence 6663
No 168
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.39 E-value=0.34 Score=51.76 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=94.9
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
+.+|+|..|++..-.+..||++..++. -..+.+-..+. .........++-|+..+++++.+. .+|..+++
T Consensus 389 aiSPdg~~Ia~st~~~~~iy~L~~~~~-vk~~~v~~~~~-~~~~a~~i~ftid~~k~~~~s~~~--------~~le~~el 458 (691)
T KOG2048|consen 389 AISPDGNLIAISTVSRTKIYRLQPDPN-VKVINVDDVPL-ALLDASAISFTIDKNKLFLVSKNI--------FSLEEFEL 458 (691)
T ss_pred ccCCCCCEEEEeeccceEEEEeccCcc-eeEEEeccchh-hhccceeeEEEecCceEEEEeccc--------ceeEEEEe
Confidence 567899999999877788999988742 22223322210 011233466888998887775332 46788888
Q ss_pred CCCCccCcEEeeec--CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCc
Q 008927 229 NGQNIQEPKVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (548)
Q Consensus 229 ~~g~~~~~~~L~~~--~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~ 306 (548)
++..-.+..-+.+. -+.......||||.+||-+. ....|++++++. ++ ..++.... . ..+...
T Consensus 459 ~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~--------t~g~I~v~nl~~-~~---~~~l~~rl-n--~~vTa~ 523 (691)
T KOG2048|consen 459 ETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS--------TRGQIFVYNLET-LE---SHLLKVRL-N--IDVTAA 523 (691)
T ss_pred cCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe--------ccceEEEEEccc-ce---eecchhcc-C--cceeee
Confidence 77651111112211 22356678899999999665 246899999984 43 23333211 1 345666
Q ss_pred eECcCCc-EEEEEeCCCCeeeEEEEeccCCe
Q 008927 307 KWSSKGE-LFFVTDRKNGFWNLHKWIESNNE 336 (548)
Q Consensus 307 ~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~ 336 (548)
.++|... -+.+.+. + .++|-+|++..+
T Consensus 524 ~~~~~~~~~lvvats-~--nQv~efdi~~~~ 551 (691)
T KOG2048|consen 524 AFSPFVRNRLVVATS-N--NQVFEFDIEARN 551 (691)
T ss_pred eccccccCcEEEEec-C--CeEEEEecchhh
Confidence 7786654 3334332 2 378888875443
No 169
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=95.31 E-value=0.048 Score=55.05 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=46.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCcc--ChHHHHHHhcCcEEEEeCCCCCCCC
Q 008927 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL--NLSIQYWTSRGWAFVDVNYGGSTGL 538 (548)
Q Consensus 471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~--~~~~Q~~asrGyaVl~~NyRGStGy 538 (548)
++..+...+|.|.. . .....|+||++|||=+....... ..-..+.+..||.|+.+|||=+..+
T Consensus 60 ~~~~~~~~~y~p~~-~----~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~ 124 (312)
T COG0657 60 SGDGVPVRVYRPDR-K----AAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH 124 (312)
T ss_pred CCCceeEEEECCCC-C----CCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC
Confidence 45557899999811 1 24568999999999766544333 3456777889999999999988775
No 170
>PRK13615 lipoprotein LpqB; Provisional
Probab=95.31 E-value=1.1 Score=48.57 Aligned_cols=157 Identities=10% Similarity=0.039 Sum_probs=91.9
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
+.+.++..++|.+. ++.||+=... +..+.+... ..+..|.|+++| +|..+ .+.. ...+....
T Consensus 340 avS~dg~~~A~v~~-~~~l~vg~~~---~~~~~~~~~-----~~Lt~PS~d~~g-~vWtv-~~g~------~~~l~~~~- 401 (557)
T PRK13615 340 TLSADGRQAAVRNA-SGVWSVGDGD---RDAVLLDTR-----PGLVAPSLDAQG-YVWST-PASD------PRGLVAWG- 401 (557)
T ss_pred eEcCCCceEEEEcC-CceEEEecCC---CcceeeccC-----CccccCcCcCCC-CEEEE-eCCC------ceEEEEec-
Confidence 45567888999864 3455544332 455666543 247888999998 66554 3321 12333332
Q ss_pred CCCCccCcEEeee---cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc----e-eeeEEEcCCCCCcc
Q 008927 229 NGQNIQEPKVLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD----V-YKRVCVAGFDPTIV 300 (548)
Q Consensus 229 ~~g~~~~~~~L~~---~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~----~-~~~~~l~~~~~~~~ 300 (548)
.+|+ ...+.- ....+...++|+||-|+|.+.... ...+|++.-+..++. + .+.+.+....
T Consensus 402 ~~G~---~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~-----g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l---- 469 (557)
T PRK13615 402 PDGV---GHPVAVSWTATGRVVSLEVARDGARVLVQLETG-----AGPQLLVASIVRDGGVPTSLTTTPLELLASP---- 469 (557)
T ss_pred CCCc---eEEeeccccCCCeeEEEEeCCCccEEEEEEecC-----CCCEEEEEEEEeCCCcceEeeeccEEcccCc----
Confidence 2344 323311 112477889999999999886332 246788876654232 2 2223332222
Q ss_pred cCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCC
Q 008927 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN 335 (548)
Q Consensus 301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g 335 (548)
..+....|..|++|+.+.....+...++.+.+.+.
T Consensus 470 ~~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~ 504 (557)
T PRK13615 470 GTPLDATWVDELDVATLTLAPDGERQVELHQVGGP 504 (557)
T ss_pred CcceeeEEcCCCEEEEEeccCCCCceEEEEECCCc
Confidence 35677899999998887643244466788887543
No 171
>PLN02511 hydrolase
Probab=95.29 E-value=0.053 Score=56.55 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=43.2
Q ss_pred eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 536 (548)
Q Consensus 462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt 536 (548)
+...++.. ||..+....+.+.... .....|+||++||...+.....+......+.++||.|+.+|+||-.
T Consensus 72 ~re~l~~~-DG~~~~ldw~~~~~~~----~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G 141 (388)
T PLN02511 72 RRECLRTP-DGGAVALDWVSGDDRA----LPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCA 141 (388)
T ss_pred eEEEEECC-CCCEEEEEecCccccc----CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 34456676 8888774333321110 0123489999999866543211223445567899999999999953
No 172
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.26 E-value=2.8 Score=39.80 Aligned_cols=189 Identities=15% Similarity=0.012 Sum_probs=93.2
Q ss_pred EECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC
Q 008927 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (548)
Q Consensus 152 ~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~ 230 (548)
++++.|+.. ..++.||.++..+ |+.. ...... ... ..+ ..++..|++...+ +.|+.+|+.+
T Consensus 34 ~~~~~v~~~-~~~~~l~~~d~~t--G~~~W~~~~~~---~~~-~~~--~~~~~~v~v~~~~---------~~l~~~d~~t 95 (238)
T PF13360_consen 34 PDGGRVYVA-SGDGNLYALDAKT--GKVLWRFDLPG---PIS-GAP--VVDGGRVYVGTSD---------GSLYALDAKT 95 (238)
T ss_dssp EETTEEEEE-ETTSEEEEEETTT--SEEEEEEECSS---CGG-SGE--EEETTEEEEEETT---------SEEEEEETTT
T ss_pred EeCCEEEEE-cCCCEEEEEECCC--CCEEEEeeccc---ccc-cee--eecccccccccce---------eeeEecccCC
Confidence 366776665 4678999999865 4432 222110 111 112 2345566554322 3799999999
Q ss_pred CCccCcEEe-eecC----CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc----
Q 008927 231 QNIQEPKVL-VSGS----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE---- 301 (548)
Q Consensus 231 g~~~~~~~L-~~~~----~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~---- 301 (548)
|+ ..-- .... ..........+|+++++.. . ...|+.+|++ +|++.-...+ ..... ..
T Consensus 96 G~---~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~g~l~~~d~~-tG~~~w~~~~-~~~~~-~~~~~~ 161 (238)
T PF13360_consen 96 GK---VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT-S-------SGKLVALDPK-TGKLLWKYPV-GEPRG-SSPISS 161 (238)
T ss_dssp SC---EEEEEEE-SSCTCSTB--SEEEEETTEEEEEE-T-------CSEEEEEETT-TTEEEEEEES-STT-S-S--EEE
T ss_pred cc---eeeeeccccccccccccccCceEecCEEEEEe-c-------cCcEEEEecC-CCcEEEEeec-CCCCC-Ccceee
Confidence 97 3322 1211 1222233333577765443 1 4679999988 4652111222 21100 00
Q ss_pred ---CCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC
Q 008927 302 ---SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (548)
Q Consensus 302 ---~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~ 378 (548)
....+... +|.+| +... .+. ++.+|+++|+..- ... ..... ..+.. +++.|++.. .
T Consensus 162 ~~~~~~~~~~~-~~~v~-~~~~-~g~--~~~~d~~tg~~~w-~~~---~~~~~-------~~~~~---~~~~l~~~~-~- 220 (238)
T PF13360_consen 162 FSDINGSPVIS-DGRVY-VSSG-DGR--VVAVDLATGEKLW-SKP---ISGIY-------SLPSV---DGGTLYVTS-S- 220 (238)
T ss_dssp ETTEEEEEECC-TTEEE-EECC-TSS--EEEEETTTTEEEE-EEC---SS-EC-------ECEEC---CCTEEEEEE-T-
T ss_pred ecccccceEEE-CCEEE-EEcC-CCe--EEEEECCCCCEEE-Eec---CCCcc-------CCcee---eCCEEEEEe-C-
Confidence 01223333 45344 4433 332 6777988887431 111 01100 00221 667776654 3
Q ss_pred CeEEEEEEECCCCceE
Q 008927 379 GRSYLGILDDFGHSLS 394 (548)
Q Consensus 379 g~~~L~~~dl~~g~~~ 394 (548)
..+|+.+|+.+|+..
T Consensus 221 -~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 221 -DGRLYALDLKTGKVV 235 (238)
T ss_dssp -TTEEEEEETTTTEEE
T ss_pred -CCEEEEEECCCCCEE
Confidence 357899999999753
No 173
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.25 E-value=3.1 Score=40.37 Aligned_cols=120 Identities=17% Similarity=0.192 Sum_probs=64.0
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee-ecCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (548)
Q Consensus 192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~-~~~~~~~~p~~SPDGk~La~~~~~~~~~p~ 270 (548)
..+.+.|.||.+.|++|. ++. ..|+.+++++.- .+.+. .+.+-+..-.+.-+|+ ++... ..
T Consensus 23 e~SGLTy~pd~~tLfaV~-d~~-------~~i~els~~G~v---lr~i~l~g~~D~EgI~y~g~~~-~vl~~-Er----- 84 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQ-DEP-------GEIYELSLDGKV---LRRIPLDGFGDYEGITYLGNGR-YVLSE-ER----- 84 (248)
T ss_dssp -EEEEEEETTTTEEEEEE-TTT-------TEEEEEETT--E---EEEEE-SS-SSEEEEEE-STTE-EEEEE-TT-----
T ss_pred CccccEEcCCCCeEEEEE-CCC-------CEEEEEcCCCCE---EEEEeCCCCCCceeEEEECCCE-EEEEE-cC-----
Confidence 377889999999999984 332 479999987543 44543 2323345556666664 33233 21
Q ss_pred CCceEEEEEecCCCc-ee--eeEEEc-CCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEec
Q 008927 271 DKAELWVGYISENGD-VY--KRVCVA-GFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 332 (548)
Q Consensus 271 ~~~~L~v~~~~~~g~-~~--~~~~l~-~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~ 332 (548)
...|++++++..+. +. ....+. +........+..++|+|.++ |+++.++ .-..||.++.
T Consensus 85 -~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~--~P~~l~~~~~ 148 (248)
T PF06977_consen 85 -DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER--KPKRLYEVNG 148 (248)
T ss_dssp -TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES--SSEEEEEEES
T ss_pred -CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC--CChhhEEEcc
Confidence 35799998854332 11 111121 10000003356789999877 8777665 2345787775
No 174
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=95.23 E-value=3.1 Score=40.07 Aligned_cols=165 Identities=13% Similarity=0.140 Sum_probs=87.1
Q ss_pred eecceeeCCC-CCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcE-EeeecC-CceeeeEECCCCCEEEEEEecCCCC
Q 008927 192 SYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK-VLVSGS-DFYAFPRMDPRGERMAWIEWHHPNM 268 (548)
Q Consensus 192 ~~~~~~~SpD-G~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~-~L~~~~-~~~~~p~~SPDGk~La~~~~~~~~~ 268 (548)
|.-.++|.|- |. |++.+... ..|..+++.++..-+.+ .|.++. ..+...+|||.|++||-.+.+.
T Consensus 16 r~W~~awhp~~g~-ilAscg~D--------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~--- 83 (312)
T KOG0645|consen 16 RVWSVAWHPGKGV-ILASCGTD--------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA--- 83 (312)
T ss_pred cEEEEEeccCCce-EEEeecCC--------ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc---
Confidence 5667789997 54 55544332 24555555543210012 222222 2356789999999998655332
Q ss_pred CCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEee---ccccc
Q 008927 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI---YSLDA 345 (548)
Q Consensus 269 p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l---~~~~~ 345 (548)
..-||- - .++++.....|.+.. ..+-..+||++|.++....| +----|+.++ ++++..-+ .+...
T Consensus 84 ---t~~Iw~--k-~~~efecv~~lEGHE----nEVK~Vaws~sG~~LATCSR-DKSVWiWe~d-eddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 84 ---TVVIWK--K-EDGEFECVATLEGHE----NEVKCVAWSASGNYLATCSR-DKSVWIWEID-EDDEFECIAVLQEHTQ 151 (312)
T ss_pred ---eEEEee--c-CCCceeEEeeeeccc----cceeEEEEcCCCCEEEEeeC-CCeEEEEEec-CCCcEEEEeeeccccc
Confidence 122332 1 245544444555543 45677899999996666555 3333355555 34454322 22222
Q ss_pred ccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE
Q 008927 346 EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (548)
Q Consensus 346 d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~ 394 (548)
|.....| - +..-|+|+...+..-.+|+-+. ++.+.
T Consensus 152 DVK~V~W---------H----Pt~dlL~S~SYDnTIk~~~~~~-dddW~ 186 (312)
T KOG0645|consen 152 DVKHVIW---------H----PTEDLLFSCSYDNTIKVYRDED-DDDWE 186 (312)
T ss_pred cccEEEE---------c----CCcceeEEeccCCeEEEEeecC-CCCee
Confidence 3333333 2 2345777777777777776654 44443
No 175
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=95.21 E-value=0.15 Score=49.72 Aligned_cols=105 Identities=23% Similarity=0.216 Sum_probs=66.2
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCce-------eeeEECCCCCEEEEEEecC
Q 008927 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY-------AFPRMDPRGERMAWIEWHH 265 (548)
Q Consensus 193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~-------~~p~~SPDGk~La~~~~~~ 265 (548)
...++|||+..+++-++.|. ...||-+|++-...+++..|..++-+. .-..+||.|+.||...
T Consensus 281 V~~~aFsn~S~r~vtvSkDG-------~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~--- 350 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSKDG-------KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF--- 350 (420)
T ss_pred eeeeeeCCCcceeEEEecCC-------cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec---
Confidence 44678999999998887653 357888777654333366666553221 2346899999988432
Q ss_pred CCCCCCCceEEEEEecCCCce-eeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeC
Q 008927 266 PNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR 320 (548)
Q Consensus 266 ~~~p~~~~~L~v~~~~~~g~~-~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~ 320 (548)
++.|.++.-+. |+. .+...+.+ +.+....|++||+ ++-..|+
T Consensus 351 ------gs~l~~~~se~-g~~~~~~e~~h~------~~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 351 ------GSDLKVFASED-GKDYPELEDIHS------TTISSISYSSDGKYIATCGDR 394 (420)
T ss_pred ------CCceEEEEccc-CccchhHHHhhc------CceeeEEecCCCcEEeeecce
Confidence 45677776663 541 11111111 4578899999999 5555555
No 176
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=95.14 E-value=4.7 Score=41.69 Aligned_cols=145 Identities=12% Similarity=0.094 Sum_probs=75.6
Q ss_pred eCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEe
Q 008927 161 NYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239 (548)
Q Consensus 161 ~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L 239 (548)
...++.|+++.++. ..| ..+... ...+..+.|.|.|..|+--+.|. .-.||.+.-.+. ...|
T Consensus 335 s~td~~i~V~kv~~--~~P~~t~~GH----~g~V~alk~n~tg~LLaS~SdD~-------TlkiWs~~~~~~----~~~l 397 (524)
T KOG0273|consen 335 SSTDGCIHVCKVGE--DRPVKTFIGH----HGEVNALKWNPTGSLLASCSDDG-------TLKIWSMGQSNS----VHDL 397 (524)
T ss_pred cCCCceEEEEEecC--CCcceeeecc----cCceEEEEECCCCceEEEecCCC-------eeEeeecCCCcc----hhhh
Confidence 44567777777765 333 333332 13466778999998765543331 234554332221 2233
Q ss_pred eecCCceeeeEECCCCCEEEEEEecCCCCC----C--CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc
Q 008927 240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMP----W--DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (548)
Q Consensus 240 ~~~~~~~~~p~~SPDGk~La~~~~~~~~~p----~--~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~ 313 (548)
.....-+....|||+|.- .+ .+++. | -.+-+-+.|+.. |. ....+.... +.+..+.|||||+
T Consensus 398 ~~Hskei~t~~wsp~g~v----~~-n~~~~~~l~sas~dstV~lwdv~~-gv--~i~~f~kH~----~pVysvafS~~g~ 465 (524)
T KOG0273|consen 398 QAHSKEIYTIKWSPTGPV----TS-NPNMNLMLASASFDSTVKLWDVES-GV--PIHTLMKHQ----EPVYSVAFSPNGR 465 (524)
T ss_pred hhhccceeeEeecCCCCc----cC-CCcCCceEEEeecCCeEEEEEccC-Cc--eeEeeccCC----CceEEEEecCCCc
Confidence 322222344589999872 11 12110 0 123455666663 43 122233333 6788999999999
Q ss_pred EEEEEeCCCCeeeEEEEeccCCee
Q 008927 314 LFFVTDRKNGFWNLHKWIESNNEV 337 (548)
Q Consensus 314 L~~~sd~~~g~~~Ly~~d~~~g~~ 337 (548)
.+..-+. +|.-+|| +..+++.
T Consensus 466 ylAsGs~-dg~V~iw--s~~~~~l 486 (524)
T KOG0273|consen 466 YLASGSL-DGCVHIW--STKTGKL 486 (524)
T ss_pred EEEecCC-CCeeEec--cccchhe
Confidence 6656555 5654444 4445554
No 177
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.05 E-value=0.53 Score=51.14 Aligned_cols=153 Identities=17% Similarity=0.150 Sum_probs=87.5
Q ss_pred eeEEECCEEEEEeC-CCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927 149 AFRIFGDTVIFSNY-KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (548)
Q Consensus 149 ~~~~~~~~i~F~~~-~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id 227 (548)
+|+|+.+.|+=.+. ..-+||-++... ...+-.+ ...-..+..|+|-| ++|..-.++ ...+||..|
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s----~~V~y~G---H~~PVwdV~F~P~G--yYFatas~D-----~tArLWs~d 523 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWS----CLVIYKG---HLAPVWDVQFAPRG--YYFATASHD-----QTARLWSTD 523 (707)
T ss_pred eecccccceeeccCCcceeeeecccce----eEEEecC---CCcceeeEEecCCc--eEEEecCCC-----ceeeeeecc
Confidence 57777765554442 334899877643 1111111 11224466789987 455543332 346899887
Q ss_pred CCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (548)
Q Consensus 228 l~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ 307 (548)
-... .|++...-.-+.-..|.|++.++|=-+. ...+.+.|+.. |. .+|++.|.. ..+....
T Consensus 524 ~~~P----lRifaghlsDV~cv~FHPNs~Y~aTGSs--------D~tVRlWDv~~-G~--~VRiF~GH~----~~V~al~ 584 (707)
T KOG0263|consen 524 HNKP----LRIFAGHLSDVDCVSFHPNSNYVATGSS--------DRTVRLWDVST-GN--SVRIFTGHK----GPVTALA 584 (707)
T ss_pred cCCc----hhhhcccccccceEEECCcccccccCCC--------CceEEEEEcCC-Cc--EEEEecCCC----CceEEEE
Confidence 6322 3444322212333578999987762211 22355557764 53 367788865 6789999
Q ss_pred ECcCCcEEEEEeCCCCeeeEEEEeccCCee
Q 008927 308 WSSKGELFFVTDRKNGFWNLHKWIESNNEV 337 (548)
Q Consensus 308 wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~ 337 (548)
+||+|+.+...+. .| .|..+|+.+|+.
T Consensus 585 ~Sp~Gr~LaSg~e-d~--~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 585 FSPCGRYLASGDE-DG--LIKIWDLANGSL 611 (707)
T ss_pred EcCCCceEeeccc-CC--cEEEEEcCCCcc
Confidence 9999984444443 44 566777777764
No 178
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=95.04 E-value=0.057 Score=54.62 Aligned_cols=62 Identities=21% Similarity=0.210 Sum_probs=43.6
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC---ccChHHHHH-HhcCcEEEEeCCCCCCC
Q 008927 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---ILNLSIQYW-TSRGWAFVDVNYGGSTG 537 (548)
Q Consensus 472 G~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~---~~~~~~Q~~-asrGyaVl~~NyRGStG 537 (548)
...++..||.|.... +..+.|+||++|||-+..... .|+...-.+ ...+-+|+.||||=..-
T Consensus 71 ~~~l~vRly~P~~~~----~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPE 136 (336)
T KOG1515|consen 71 FTNLPVRLYRPTSSS----SETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPE 136 (336)
T ss_pred CCCeEEEEEcCCCCC----cccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCC
Confidence 345999999997521 226789999999998866543 233222233 56799999999996553
No 179
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=94.99 E-value=4.1 Score=41.78 Aligned_cols=166 Identities=11% Similarity=0.110 Sum_probs=91.1
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeec-CCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (548)
Q Consensus 192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~-~~~~~~p~~SPDGk~La~~~~~~~~~p~ 270 (548)
.+.+.+|.|-.+.++....+. ..|.++|+.+++ .+++..... ..-+...+|+|=+..|.-.. .
T Consensus 229 ~VeDV~~h~~h~~lF~sv~dd--------~~L~iwD~R~~~-~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~-S------ 292 (422)
T KOG0264|consen 229 VVEDVAWHPLHEDLFGSVGDD--------GKLMIWDTRSNT-SKPSHSVKAHSAEVNCVAFNPFNEFILATG-S------ 292 (422)
T ss_pred ceehhhccccchhhheeecCC--------CeEEEEEcCCCC-CCCcccccccCCceeEEEeCCCCCceEEec-c------
Confidence 356778888766665543332 478899998531 113333322 22244567888776554233 1
Q ss_pred CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCC
Q 008927 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR 349 (548)
Q Consensus 271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~ 349 (548)
....|.+.|+..-.+ ....+.+.. ..+.+..|||+.+ ++..+-. +++.++|-++..+.+. . +++++.+.
T Consensus 293 ~D~tV~LwDlRnL~~--~lh~~e~H~----dev~~V~WSPh~etvLASSg~-D~rl~vWDls~ig~eq-~--~eda~dgp 362 (422)
T KOG0264|consen 293 ADKTVALWDLRNLNK--PLHTFEGHE----DEVFQVEWSPHNETVLASSGT-DRRLNVWDLSRIGEEQ-S--PEDAEDGP 362 (422)
T ss_pred CCCcEEEeechhccc--CceeccCCC----cceEEEEeCCCCCceeEeccc-CCcEEEEecccccccc-C--hhhhccCC
Confidence 134688888764221 122333333 5688999999988 7766544 5555555544323221 1 12222222
Q ss_pred Cc--c-----cccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927 350 PL--W-----VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (548)
Q Consensus 350 p~--w-----~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~ 386 (548)
|. + ....+.|+|.| ...++++++.+++.-+|+.+
T Consensus 363 pEllF~HgGH~~kV~DfsWnp---~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 363 PELLFIHGGHTAKVSDFSWNP---NEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred cceeEEecCcccccccccCCC---CCCeEEEEecCCceEEEeec
Confidence 22 2 22334567765 56677777777777677654
No 180
>PRK13614 lipoprotein LpqB; Provisional
Probab=94.89 E-value=3.7 Score=44.78 Aligned_cols=199 Identities=11% Similarity=0.068 Sum_probs=105.5
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC
Q 008927 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (548)
Q Consensus 164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~ 243 (548)
+++|++++ + +...++.............+..|+||+.++++..+ ...|+..... +. .+.+.++.
T Consensus 320 ~G~l~~~~--~--~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~~~--------~~~l~~~~~g-~~---~~~~~~g~ 383 (573)
T PRK13614 320 DGELVRYE--N--GQISPLPDIQSVAGLGPASPAESPVSQTVAFLNGS--------RTTLYTVSPG-QP---ARALTSGS 383 (573)
T ss_pred CCeEEEec--C--CCcccCCCccCcCcccccceeecCCCceEEEecCC--------CcEEEEecCC-Cc---ceeeecCC
Confidence 56677664 2 33444432211112234567899999999997322 2467877763 34 56666665
Q ss_pred CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCcee--eeEEEcCCC-CCcccCCcCceECcCCc-EEEEEe
Q 008927 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY--KRVCVAGFD-PTIVESPTEPKWSSKGE-LFFVTD 319 (548)
Q Consensus 244 ~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~--~~~~l~~~~-~~~~~~~~~~~wspDG~-L~~~sd 319 (548)
. ...|.|+++| + +|+..+. ....|..+.-++.++.. ....+.... .+ ..+..++-|+||- ++++..
T Consensus 384 ~-Lt~PS~d~~g-~-vWtv~~g-----~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g--~~I~~lrvSrDG~R~Avi~~ 453 (573)
T PRK13614 384 T-LTRPSFSPQD-W-VWTAGPG-----GNGRIVAYRPTGVAEGAQAPTVTLTADWLAG--RTVKELRVSREGVRALVISE 453 (573)
T ss_pred C-ccCCcccCCC-C-EEEeeCC-----CCceEEEEecCCCcccccccceeecccccCC--CeeEEEEECCCccEEEEEEE
Confidence 4 6789999999 3 4665321 12255554432222111 011111111 01 3478899999998 888775
Q ss_pred CCCCeeeEEEEe---ccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEE-eCCeEEEEEEECCCCceEe
Q 008927 320 RKNGFWNLHKWI---ESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHSLSL 395 (548)
Q Consensus 320 ~~~g~~~Ly~~d---~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~-~~g~~~L~~~dl~~g~~~~ 395 (548)
. .|..+|++.- -.+|+.+.|+... .... ........|. ++..|+.... .++..+.+++.+..|..+.
T Consensus 454 ~-~g~~~V~va~V~R~~~G~P~~L~~~~-~~~~---~~~~~sl~W~----~~~sl~V~~~~~~~~~~~~~v~v~~g~~~~ 524 (573)
T PRK13614 454 Q-NGKSRVQVAGIVRNEDGTPRELTAPI-TLAA---DSDADTGAWV----GDSTVVVTKASATSNVVPELLSVDAGQPQQ 524 (573)
T ss_pred e-CCccEEEEEEEEeCCCCCeEEccCce-eccc---CCCcceeEEc----CCCEEEEEeccCCCcceEEEEEeCCCCccc
Confidence 5 5655555432 2356555665210 0000 0112234565 5667766654 3455667777776665554
Q ss_pred ec
Q 008927 396 LD 397 (548)
Q Consensus 396 l~ 397 (548)
+.
T Consensus 525 l~ 526 (573)
T PRK13614 525 LA 526 (573)
T ss_pred CC
Confidence 43
No 181
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.85 Score=49.01 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=25.3
Q ss_pred cCCcCceECcCCc-EEEE-EeCCCCeeeEEEEeccCC
Q 008927 301 ESPTEPKWSSKGE-LFFV-TDRKNGFWNLHKWIESNN 335 (548)
Q Consensus 301 ~~~~~~~wspDG~-L~~~-sd~~~g~~~Ly~~d~~~g 335 (548)
+.+....|.|||+ ++.. -||...+.+|.+++++..
T Consensus 358 EYI~Ragwtpdgkyvwvq~LdR~Q~~l~iilip~~~f 394 (867)
T KOG2281|consen 358 EYIARAGWTPDGKYVWVQVLDRSQQRLQIILIPPTLF 394 (867)
T ss_pred eeeeeccccCCCcEEEEEEecCCcceeEEEEECHHHc
Confidence 3456678999999 4443 577677778888877554
No 182
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=9.4 Score=43.43 Aligned_cols=68 Identities=6% Similarity=0.097 Sum_probs=42.9
Q ss_pred CEEEEEEEeCC-eEEEEEEECCCC-ceEeecCCCceeE---eeeecCCEEEEEEecC-CCCCeEEEEEcCCCce
Q 008927 369 NLIACSYRQNG-RSYLGILDDFGH-SLSLLDIPFTDID---NITLGNDCLFVEGASG-VEPSSVAKVTLDDHKL 436 (548)
Q Consensus 369 ~~l~~~~~~~g-~~~L~~~dl~~g-~~~~l~~~~~~~~---~~s~d~~~l~~~~ss~-~~p~~l~~~d~~~~~~ 436 (548)
..+++....++ ..++..+....+ ..+.++.+...+. ..+.+++.++|.+... ..-.+||.+++.+...
T Consensus 353 ~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~~ 426 (755)
T KOG2100|consen 353 SYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSGTV 426 (755)
T ss_pred ceeEEEeeccCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEcccccc
Confidence 34444444455 778888877777 5666776544332 2255677888877654 4456889998876553
No 183
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=94.79 E-value=0.37 Score=47.34 Aligned_cols=111 Identities=11% Similarity=0.186 Sum_probs=68.3
Q ss_pred eeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceE
Q 008927 196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 275 (548)
Q Consensus 196 ~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L 275 (548)
..+||+|+.|+... +.+|++-|..+-+ ..+|..--+-+...-|+.|..++..+.... ..+
T Consensus 14 c~fSp~g~yiAs~~----------~yrlviRd~~tlq---~~qlf~cldki~yieW~ads~~ilC~~yk~-------~~v 73 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS----------RYRLVIRDSETLQ---LHQLFLCLDKIVYIEWKADSCHILCVAYKD-------PKV 73 (447)
T ss_pred eeECCCCCeeeeee----------eeEEEEeccchhh---HHHHHHHHHHhhheeeeccceeeeeeeecc-------ceE
Confidence 36999999987652 2467777777765 444443334445567999998887766443 246
Q ss_pred EEEEecCCCceeeeEE-EcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCee
Q 008927 276 WVGYISENGDVYKRVC-VAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV 337 (548)
Q Consensus 276 ~v~~~~~~g~~~~~~~-l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~ 337 (548)
.+.++.. -+ ..+ +..+. .......|||||+ |+..++- . ..|-++.+.+.+.
T Consensus 74 qvwsl~Q-pe---w~ckIdeg~----agls~~~WSPdgrhiL~tseF-~--lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 74 QVWSLVQ-PE---WYCKIDEGQ----AGLSSISWSPDGRHILLTSEF-D--LRITVWSLNTQKG 126 (447)
T ss_pred EEEEeec-ce---eEEEeccCC----CcceeeeECCCcceEeeeecc-e--eEEEEEEecccee
Confidence 6666652 22 222 33322 4567789999998 7776654 2 2344555545443
No 184
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=2.8 Score=44.44 Aligned_cols=219 Identities=10% Similarity=0.021 Sum_probs=112.5
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee-c
Q 008927 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-G 242 (548)
Q Consensus 164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~-~ 242 (548)
...+|+-+... ++.+.|.... ...+....|+++|+.|+.-..+ ..+.++|....+. .+.+.. .
T Consensus 196 g~~vylW~~~s--~~v~~l~~~~---~~~vtSv~ws~~G~~LavG~~~---------g~v~iwD~~~~k~--~~~~~~~h 259 (484)
T KOG0305|consen 196 GQSVYLWSASS--GSVTELCSFG---EELVTSVKWSPDGSHLAVGTSD---------GTVQIWDVKEQKK--TRTLRGSH 259 (484)
T ss_pred cceEEEEecCC--CceEEeEecC---CCceEEEEECCCCCEEEEeecC---------CeEEEEehhhccc--cccccCCc
Confidence 34678777766 6777777652 2356778899999998775433 3678888877541 333443 3
Q ss_pred CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCC
Q 008927 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (548)
Q Consensus 243 ~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~ 322 (548)
...+....|. +..|. .-. ....|...|+...... ...+.+.. ..+..+.|++|++.+..... +
T Consensus 260 ~~rvg~laW~--~~~ls--sGs------r~~~I~~~dvR~~~~~--~~~~~~H~----qeVCgLkws~d~~~lASGgn-D 322 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLS--SGS------RDGKILNHDVRISQHV--VSTLQGHR----QEVCGLKWSPDGNQLASGGN-D 322 (484)
T ss_pred CceeEEEecc--CceEE--Eec------CCCcEEEEEEecchhh--hhhhhccc----ceeeeeEECCCCCeeccCCC-c
Confidence 4445666776 33232 211 1345666666542221 11133322 45788999999974333211 1
Q ss_pred CeeeEEEEeccCCee-EeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCc
Q 008927 323 GFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (548)
Q Consensus 323 g~~~Ly~~d~~~g~~-~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~ 401 (548)
..++.+|..+.+. ..++...+.+-...|.+ -...|+++..-.....|...|..+|+....-....
T Consensus 323 --N~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP------------~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs 388 (484)
T KOG0305|consen 323 --NVVFIWDGLSPEPKFTFTEHTAAVKALAWCP------------WQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS 388 (484)
T ss_pred --cceEeccCCCccccEEEeccceeeeEeeeCC------------CccCceEEcCCCcccEEEEEEcCCCcEecccccCC
Confidence 2355666523222 22332222222223332 22334444322234566677776665432222234
Q ss_pred eeEee--eecCCEEEEEEecCCCCCeEEEE
Q 008927 402 DIDNI--TLGNDCLFVEGASGVEPSSVAKV 429 (548)
Q Consensus 402 ~~~~~--s~d~~~l~~~~ss~~~p~~l~~~ 429 (548)
.|..+ +...+.++....-....-.||.+
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 56655 56666776655433333345554
No 185
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.72 E-value=4.4 Score=39.28 Aligned_cols=227 Identities=9% Similarity=0.063 Sum_probs=122.9
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (548)
Q Consensus 154 ~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~ 233 (548)
++.|.|..+..+.|=++|..+ |+.++..-.. ..+-......|||..-++ +.. .-|.++|.++.+
T Consensus 72 dG~VWft~qg~gaiGhLdP~t--Gev~~ypLg~---Ga~Phgiv~gpdg~~Wit--d~~--------~aI~R~dpkt~e- 135 (353)
T COG4257 72 DGAVWFTAQGTGAIGHLDPAT--GEVETYPLGS---GASPHGIVVGPDGSAWIT--DTG--------LAIGRLDPKTLE- 135 (353)
T ss_pred CCceEEecCccccceecCCCC--CceEEEecCC---CCCCceEEECCCCCeeEe--cCc--------ceeEEecCcccc-
Confidence 346899887777888999988 6666543331 122334567889875333 221 268899988887
Q ss_pred cCcEEee----ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC-CCceeeeEEEcCCCCCcccCCcCceE
Q 008927 234 QEPKVLV----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPTIVESPTEPKW 308 (548)
Q Consensus 234 ~~~~~L~----~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~-~g~~~~~~~l~~~~~~~~~~~~~~~w 308 (548)
.++.. ...+....+.|.++|. |-|+....- .. .++. .+. .++... +.+ .......-
T Consensus 136 --vt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G~-----yG-----rLdPa~~~---i~vfpa-PqG--~gpyGi~a 196 (353)
T COG4257 136 --VTRFPLPLEHADANLETAVFDPWGN-LWFTGQIGA-----YG-----RLDPARNV---ISVFPA-PQG--GGPYGICA 196 (353)
T ss_pred --eEEeecccccCCCcccceeeCCCcc-EEEeecccc-----ce-----ecCcccCc---eeeecc-CCC--CCCcceEE
Confidence 55442 2233456788999987 555552210 01 1111 010 111111 101 22344566
Q ss_pred CcCCcEEEEEeCCCCeeeEEEEeccCCeeEeeccccc--ccCCCcccccCcceeeeeecCCC-CEEEEEEEeCCeEEEEE
Q 008927 309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA--EFSRPLWVFGINSYEIIQSHGEK-NLIACSYRQNGRSYLGI 385 (548)
Q Consensus 309 spDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~--d~~~p~w~~~~~~~~~~~~~~d~-~~l~~~~~~~g~~~L~~ 385 (548)
.|||+++|.+=. | ..|-++|..++-.+.+...+. .-..-.|+ |. +++. .. .-+..+|++
T Consensus 197 tpdGsvwyasla--g-naiaridp~~~~aev~p~P~~~~~gsRriws-------------dpig~~w-it-twg~g~l~r 258 (353)
T COG4257 197 TPDGSVWYASLA--G-NAIARIDPFAGHAEVVPQPNALKAGSRRIWS-------------DPIGRAW-IT-TWGTGSLHR 258 (353)
T ss_pred CCCCcEEEEecc--c-cceEEcccccCCcceecCCCccccccccccc-------------CccCcEE-Ee-ccCCceeeE
Confidence 899998888643 1 257788887775554432111 11111232 22 2333 33 346678999
Q ss_pred EECCCCceEeecCCCce--eEeeeecC-CEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 386 LDDFGHSLSLLDIPFTD--IDNITLGN-DCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 386 ~dl~~g~~~~l~~~~~~--~~~~s~d~-~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
+|+....++...+|... -..+..|. +++++.- -....|.++|.++...
T Consensus 259 fdPs~~sW~eypLPgs~arpys~rVD~~grVW~se---a~agai~rfdpeta~f 309 (353)
T COG4257 259 FDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSE---ADAGAIGRFDPETARF 309 (353)
T ss_pred eCcccccceeeeCCCCCCCcceeeeccCCcEEeec---cccCceeecCcccceE
Confidence 99988877765555332 22333454 4444322 2345788888776654
No 186
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.72 E-value=8.2 Score=42.36 Aligned_cols=154 Identities=12% Similarity=-0.006 Sum_probs=77.9
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~id 227 (548)
.|.|-+..| .+..+.|.|-++++.. ... ..+... ...+.+.+.+||++..+..+.|+-- .....-+..+
T Consensus 419 ~Fvpgd~~I-v~G~k~Gel~vfdlaS--~~l~Eti~AH----dgaIWsi~~~pD~~g~vT~saDktV---kfWdf~l~~~ 488 (888)
T KOG0306|consen 419 KFVPGDRYI-VLGTKNGELQVFDLAS--ASLVETIRAH----DGAIWSISLSPDNKGFVTGSADKTV---KFWDFKLVVS 488 (888)
T ss_pred EecCCCceE-EEeccCCceEEEEeeh--hhhhhhhhcc----ccceeeeeecCCCCceEEecCCcEE---EEEeEEEEec
Confidence 344444444 3444567677777765 322 222222 2345677899999987766544310 0011112223
Q ss_pred CCCCCccCcE-------EeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927 228 LNGQNIQEPK-------VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (548)
Q Consensus 228 l~~g~~~~~~-------~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~ 300 (548)
..|.. .+ +..+-.+-+....+||||+.||..-.+. .-.+|.+| + =+ -...+-|..
T Consensus 489 -~~gt~--~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn------TVkVyflD--t-lK--FflsLYGHk---- 550 (888)
T KOG0306|consen 489 -VPGTQ--KKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN------TVKVYFLD--T-LK--FFLSLYGHK---- 550 (888)
T ss_pred -cCccc--ceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC------eEEEEEec--c-ee--eeeeecccc----
Confidence 23320 12 1122234456678999999998443221 23455444 2 11 234455544
Q ss_pred cCCcCceECcCCcEEEEEeCCCCeeeEEEEe
Q 008927 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWI 331 (548)
Q Consensus 301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d 331 (548)
..+....-|||+++++.... +-.-.+|-+|
T Consensus 551 LPV~smDIS~DSklivTgSA-DKnVKiWGLd 580 (888)
T KOG0306|consen 551 LPVLSMDISPDSKLIVTGSA-DKNVKIWGLD 580 (888)
T ss_pred cceeEEeccCCcCeEEeccC-CCceEEeccc
Confidence 55667788999997766432 2223444444
No 187
>PLN00181 protein SPA1-RELATED; Provisional
Probab=94.65 E-value=11 Score=43.42 Aligned_cols=152 Identities=10% Similarity=0.022 Sum_probs=80.0
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceee-CCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIF-DPRFNRYVTVREDRRQDALNSTTEIVAI 226 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~-SpDG~~i~~v~~~~~~~~~~~~~~l~~i 226 (548)
.|.+.++.++++...++.|.+.++.. +.. ..+... .......| +++|..|+....+ ..|+.+
T Consensus 582 ~~~p~~~~~L~Sgs~Dg~v~iWd~~~--~~~~~~~~~~-----~~v~~v~~~~~~g~~latgs~d---------g~I~iw 645 (793)
T PLN00181 582 DYSSADPTLLASGSDDGSVKLWSINQ--GVSIGTIKTK-----ANICCVQFPSESGRSLAFGSAD---------HKVYYY 645 (793)
T ss_pred EEcCCCCCEEEEEcCCCEEEEEECCC--CcEEEEEecC-----CCeEEEEEeCCCCCEEEEEeCC---------CeEEEE
Confidence 45554455666666677777778765 332 223221 12334456 4578877665433 468889
Q ss_pred ECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCC---ceeeeEEEcCCCCCcccCC
Q 008927 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG---DVYKRVCVAGFDPTIVESP 303 (548)
Q Consensus 227 dl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g---~~~~~~~l~~~~~~~~~~~ 303 (548)
|+.++.. ....+......+....|+ |+..|+-.+. ...|.+.|+.... .......+.+.. ..+
T Consensus 646 D~~~~~~-~~~~~~~h~~~V~~v~f~-~~~~lvs~s~--------D~~ikiWd~~~~~~~~~~~~l~~~~gh~----~~i 711 (793)
T PLN00181 646 DLRNPKL-PLCTMIGHSKTVSYVRFV-DSSTLVSSST--------DNTLKLWDLSMSISGINETPLHSFMGHT----NVK 711 (793)
T ss_pred ECCCCCc-cceEecCCCCCEEEEEEe-CCCEEEEEEC--------CCEEEEEeCCCCccccCCcceEEEcCCC----CCe
Confidence 9877541 012233233345566776 6777653331 2357777765210 001123344432 345
Q ss_pred cCceECcCCcEEEEEeCCCCeeeEEEEecc
Q 008927 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIES 333 (548)
Q Consensus 304 ~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~ 333 (548)
....|+|+|++++.... ++ .++.++..
T Consensus 712 ~~v~~s~~~~~lasgs~-D~--~v~iw~~~ 738 (793)
T PLN00181 712 NFVGLSVSDGYIATGSE-TN--EVFVYHKA 738 (793)
T ss_pred eEEEEcCCCCEEEEEeC-CC--EEEEEECC
Confidence 56789999985444433 44 34455543
No 188
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=94.41 E-value=1.2 Score=43.54 Aligned_cols=179 Identities=11% Similarity=0.187 Sum_probs=93.3
Q ss_pred EEEEEECCCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927 222 EIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (548)
Q Consensus 222 ~l~~idl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~ 300 (548)
.|-++-+.+|.. .++... ....+...+||.|+.+|.-.+.+ ..+.+--+.+ |+. ....-+..
T Consensus 286 kIKvWri~tG~C--lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD--------~tvRiHGlKS-GK~--LKEfrGHs---- 348 (508)
T KOG0275|consen 286 KIKVWRIETGQC--LRRFDRAHTKGVTCLSFSRDNSQILSASFD--------QTVRIHGLKS-GKC--LKEFRGHS---- 348 (508)
T ss_pred cEEEEEEecchH--HHHhhhhhccCeeEEEEccCcchhhccccc--------ceEEEecccc-chh--HHHhcCcc----
Confidence 344445566652 333321 12235667899999988633211 2355555653 431 11122322
Q ss_pred cCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeec-ccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC
Q 008927 301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (548)
Q Consensus 301 ~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~-~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~ 378 (548)
..+....|++||. ++-.+ . +|.-.+ ++..+++-..-. +...|+ ...+..++|. ....++ ..+
T Consensus 349 Syvn~a~ft~dG~~iisaS-s-Dgtvkv--W~~KtteC~~Tfk~~~~d~-------~vnsv~~~PK--npeh~i-VCN-- 412 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHIISAS-S-DGTVKV--WHGKTTECLSTFKPLGTDY-------PVNSVILLPK--NPEHFI-VCN-- 412 (508)
T ss_pred ccccceEEcCCCCeEEEec-C-CccEEE--ecCcchhhhhhccCCCCcc-------cceeEEEcCC--CCceEE-EEc--
Confidence 3467889999998 44333 2 454444 444444321111 111111 1122334441 122332 222
Q ss_pred CeEEEEEEECCCCceEeecCC---Cce-eEe-eeecCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 008927 379 GRSYLGILDDFGHSLSLLDIP---FTD-IDN-ITLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 437 (548)
Q Consensus 379 g~~~L~~~dl~~g~~~~l~~~---~~~-~~~-~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~ 437 (548)
....+|++++.+.-++..+.+ .++ +.. +++.|.++|.++.. ..+|-+...+|+++
T Consensus 413 rsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED----~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 413 RSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED----GVLYCFSVLSGKLE 472 (508)
T ss_pred CCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccC----cEEEEEEeecCcee
Confidence 234688899876666766653 233 333 38999999998764 57888877777764
No 189
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.39 E-value=0.05 Score=52.94 Aligned_cols=67 Identities=21% Similarity=0.162 Sum_probs=43.5
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC-ccChHHHHHHhcCcEEEEeCCCCCCCCChh
Q 008927 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGSTGLSSV 541 (548)
Q Consensus 463 ~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~-~~~~~~Q~~asrGyaVl~~NyRGStGyG~~ 541 (548)
..+|.+ +|..-+.+||.|.. . .+..||||+.||+=...... ..+-+.......||+|++| .||.+.
T Consensus 37 ~~s~~~--~g~~r~y~l~vP~g--~----~~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yP-----dg~~~~ 103 (312)
T COG3509 37 VASFDV--NGLKRSYRLYVPPG--L----PSGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYP-----DGYDRA 103 (312)
T ss_pred cccccc--CCCccceEEEcCCC--C----CCCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECc-----Cccccc
Confidence 334444 67788999999954 3 23459999999985543221 1222233445679999999 566665
Q ss_pred h
Q 008927 542 P 542 (548)
Q Consensus 542 f 542 (548)
|
T Consensus 104 w 104 (312)
T COG3509 104 W 104 (312)
T ss_pred c
Confidence 5
No 190
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.38 E-value=0.1 Score=50.33 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=46.9
Q ss_pred eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLS 539 (548)
Q Consensus 462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG 539 (548)
+.+++++. | .++.|++.+|++ ...+|.||.+|+=..-. +...-....||++||.|+.||.=+..|-.
T Consensus 3 ~~v~~~~~-~-~~~~~~~a~P~~-------~~~~P~VIv~hei~Gl~--~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~ 69 (236)
T COG0412 3 TDVTIPAP-D-GELPAYLARPAG-------AGGFPGVIVLHEIFGLN--PHIRDVARRLAKAGYVVLAPDLYGRQGDP 69 (236)
T ss_pred cceEeeCC-C-ceEeEEEecCCc-------CCCCCEEEEEecccCCc--hHHHHHHHHHHhCCcEEEechhhccCCCC
Confidence 45778885 5 889999999975 22349999999832111 01223456899999999999987654433
No 191
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.36 E-value=0.65 Score=52.28 Aligned_cols=160 Identities=14% Similarity=0.122 Sum_probs=79.0
Q ss_pred eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEE------ec--CCCc-----eeeeEEEcCCCCCcccCCcCceECcCC
Q 008927 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGY------IS--ENGD-----VYKRVCVAGFDPTIVESPTEPKWSSKG 312 (548)
Q Consensus 246 ~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~------~~--~~g~-----~~~~~~l~~~~~~~~~~~~~~~wspDG 312 (548)
..-.+|||||++||.-+ ++. .-.+|-.. +- ++|. ++....+-+.+ ..+....|+||+
T Consensus 72 v~CVR~S~dG~~lAsGS-DD~-----~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~----~DV~Dv~Wsp~~ 141 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGS-DDR-----LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD----SDVLDVNWSPDD 141 (942)
T ss_pred eeEEEECCCCCeEeecc-Ccc-----eEEEeeecccCCcccccccccccccceeeEEEEEecCC----CccceeccCCCc
Confidence 45568999999999544 221 11223222 10 0111 22233444544 558889999999
Q ss_pred cEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCc
Q 008927 313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (548)
Q Consensus 313 ~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~ 392 (548)
.++..... ++ .+..++..+.+...+... ....+- ...|.| -|++|. +...|..-.+|+.+ +.|-
T Consensus 142 ~~lvS~s~-Dn--sViiwn~~tF~~~~vl~~-----H~s~VK---Gvs~DP---~Gky~A-SqsdDrtikvwrt~-dw~i 205 (942)
T KOG0973|consen 142 SLLVSVSL-DN--SVIIWNAKTFELLKVLRG-----HQSLVK---GVSWDP---IGKYFA-SQSDDRTLKVWRTS-DWGI 205 (942)
T ss_pred cEEEEecc-cc--eEEEEccccceeeeeeec-----cccccc---ceEECC---ccCeee-eecCCceEEEEEcc-ccee
Confidence 85444322 22 455666555543222211 111111 133443 455443 33344444555533 3455
Q ss_pred eEeecCCCce------eEee--eecCCEEEEEEecCCCCCeEEEEEc
Q 008927 393 LSLLDIPFTD------IDNI--TLGNDCLFVEGASGVEPSSVAKVTL 431 (548)
Q Consensus 393 ~~~l~~~~~~------~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~ 431 (548)
.+.++.||.. +.-+ +|||++|+...+-...-+.+-+++.
T Consensus 206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 6667766642 2222 7899987655543332344445554
No 192
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.34 E-value=4.2 Score=42.94 Aligned_cols=164 Identities=14% Similarity=0.103 Sum_probs=84.9
Q ss_pred eeeEEECCEEEEEeCCCC----eEEEEeCCCCCCCceecCCCCCCCCceecc--eeeCCCCCEEEEEEeccCCCC-CC--
Q 008927 148 GAFRIFGDTVIFSNYKDQ----RLYKHSIDSKDSSPLPITPDYGEPLVSYAD--GIFDPRFNRYVTVREDRRQDA-LN-- 218 (548)
Q Consensus 148 ~~~~~~~~~i~F~~~~~~----~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~--~~~SpDG~~i~~v~~~~~~~~-~~-- 218 (548)
.+|+|.+..|+|=..... ++-++.+.. +. .|-.. .-..+++ +.|-..|++|.+-.+++.... ..
T Consensus 352 FswsP~~~llAYwtpe~~~~parvtL~evPs--~~--~iRt~---nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f 424 (698)
T KOG2314|consen 352 FSWSPTSNLLAYWTPETNNIPARVTLMEVPS--KR--EIRTK---NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF 424 (698)
T ss_pred cccCCCcceEEEEcccccCCcceEEEEecCc--cc--eeeec---cceeeeccEEEeccCCcEEEEEEEeeccccccceE
Confidence 367777777666543321 344444433 11 12111 0123343 458889998766445442211 11
Q ss_pred ceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC-CCceeeeEEEcCCCC
Q 008927 219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDP 297 (548)
Q Consensus 219 ~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~-~g~~~~~~~l~~~~~ 297 (548)
..-+|+.|+-..=. .. ..+-.+.+.++.|-|.|.+.+.++-+.. ...+-++.++. .++ ..++..-+
T Consensus 425 ~n~eIfrireKdIp---ve-~velke~vi~FaWEP~gdkF~vi~g~~~-----k~tvsfY~~e~~~~~---~~lVk~~d- 491 (698)
T KOG2314|consen 425 SNLEIFRIREKDIP---VE-VVELKESVIAFAWEPHGDKFAVISGNTV-----KNTVSFYAVETNIKK---PSLVKELD- 491 (698)
T ss_pred eeEEEEEeeccCCC---ce-eeecchheeeeeeccCCCeEEEEEcccc-----ccceeEEEeecCCCc---hhhhhhhc-
Confidence 12356665532211 22 2233344567799999999998874432 33444444442 222 23332222
Q ss_pred CcccCCcCceECcCCcEEEEEeCCCCeeeEEEEecc
Q 008927 298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES 333 (548)
Q Consensus 298 ~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~ 333 (548)
. .......|||.|+++++....+-..+|+.+|.+
T Consensus 492 k--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 492 K--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred c--cccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 1 456778999999954444332334578888864
No 193
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=94.27 E-value=0.051 Score=59.11 Aligned_cols=55 Identities=29% Similarity=0.360 Sum_probs=33.5
Q ss_pred EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCc--cChHHHHHHhcCcEEEEeCCC
Q 008927 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI--LNLSIQYWTSRGWAFVDVNYG 533 (548)
Q Consensus 475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~--~~~~~Q~~asrGyaVl~~NyR 533 (548)
++--+|.|++.. .+.++|++|+||||=...-... ......+++.++.+|+.+|||
T Consensus 109 L~LnI~~P~~~~----~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYR 165 (535)
T PF00135_consen 109 LYLNIYTPSNAS----SNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYR 165 (535)
T ss_dssp -EEEEEEETSSS----STTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE---
T ss_pred HHHhhhhccccc----cccccceEEEeecccccCCCcccccccccccccCCCEEEEEeccc
Confidence 677788897532 2337999999999955443321 122345678999999999999
No 194
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=94.24 E-value=6.1 Score=38.91 Aligned_cols=97 Identities=8% Similarity=0.013 Sum_probs=59.5
Q ss_pred ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCce
Q 008927 195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 274 (548)
Q Consensus 195 ~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~ 274 (548)
-..|++-|..|+.-+.+ ..|+.+|..|-.. .+.|...-.-+....||+||+.|+-.+. ...
T Consensus 28 ~~~Fs~~G~~lAvGc~n---------G~vvI~D~~T~~i--ar~lsaH~~pi~sl~WS~dgr~LltsS~--------D~s 88 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGCAN---------GRVVIYDFDTFRI--ARMLSAHVRPITSLCWSRDGRKLLTSSR--------DWS 88 (405)
T ss_pred eEEeccCcceeeeeccC---------CcEEEEEccccch--hhhhhccccceeEEEecCCCCEeeeecC--------Cce
Confidence 45799999988776544 3688899988762 3444443334677899999998873331 124
Q ss_pred EEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEE
Q 008927 275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (548)
Q Consensus 275 L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~s 318 (548)
+-+.|+-. |... .+.... ..+....|.|-.+ .++++
T Consensus 89 i~lwDl~~-gs~l-~rirf~------spv~~~q~hp~k~n~~va~ 125 (405)
T KOG1273|consen 89 IKLWDLLK-GSPL-KRIRFD------SPVWGAQWHPRKRNKCVAT 125 (405)
T ss_pred eEEEeccC-CCce-eEEEcc------CccceeeeccccCCeEEEE
Confidence 66668774 5421 122222 2355667887655 44443
No 195
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=94.22 E-value=0.058 Score=51.23 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=35.3
Q ss_pred EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537 (548)
Q Consensus 475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG 537 (548)
|.+|++.|.+ +++.|.||.+|+-..-. +........||++||.|+.||+-+..+
T Consensus 1 ~~ay~~~P~~-------~~~~~~Vvv~~d~~G~~--~~~~~~ad~lA~~Gy~v~~pD~f~~~~ 54 (218)
T PF01738_consen 1 IDAYVARPEG-------GGPRPAVVVIHDIFGLN--PNIRDLADRLAEEGYVVLAPDLFGGRG 54 (218)
T ss_dssp EEEEEEEETT-------SSSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS
T ss_pred CeEEEEeCCC-------CCCCCEEEEEcCCCCCc--hHHHHHHHHHHhcCCCEEecccccCCC
Confidence 5789999964 24679999999853111 111124567899999999999866665
No 196
>PRK13613 lipoprotein LpqB; Provisional
Probab=94.09 E-value=9.1 Score=42.19 Aligned_cols=201 Identities=13% Similarity=0.203 Sum_probs=102.9
Q ss_pred CCeEEEEeCCCC--CCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc-c-CcEEe
Q 008927 164 DQRLYKHSIDSK--DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-Q-EPKVL 239 (548)
Q Consensus 164 ~~~Ly~~~~~~~--~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~-~-~~~~L 239 (548)
+++++.+..++. ++..+++.............+..|+||+.++++..+ ...|++-++..+.. + ..+.+
T Consensus 334 ~G~~~~~~~~~~~~~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~v~~~--------~~~l~vg~~~~~~~~~~~~~~~ 405 (599)
T PRK13613 334 DGQLWLLRISGTSNGTDPEPVPGALGSGRVPLRRVAVSRDESRAAGISAD--------GDSVYVGSLTPGASIGVHSWGV 405 (599)
T ss_pred CCceEEEeccccccCCCcccCCCccCCCCCCccceEEcCCCceEEEEcCC--------CcEEEEeccCCCCcccccccee
Confidence 456777765430 023344433211012245577899999999998432 13677766654430 0 01223
Q ss_pred eecCCceeeeEECCCCCEEEEEEecCCCCCCCCce-EEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEE
Q 008927 240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE-LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFV 317 (548)
Q Consensus 240 ~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~-L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~ 317 (548)
.++. ....|.|+++| . +|+..... ...+ |.+..- +|+..+... .... + ..+..++-|+||- ++++
T Consensus 406 ~~~~-~Lt~PS~d~~g-~-vWtvd~~~----~~~~vl~v~~~--~G~~~~V~~-~~l~-g--~~I~~lrvSrDG~RvAvv 472 (599)
T PRK13613 406 TADG-RLTSPSWDGRG-D-LWVVDRDP----ADPRLLWLLQG--DGEPVEVRT-PELD-G--HRVVAVRVARDGVRVALI 472 (599)
T ss_pred eccC-cccCCcCcCCC-C-EEEecCCC----CCceEEEEEcC--CCcEEEeec-cccC-C--CEeEEEEECCCccEEEEE
Confidence 4343 36789999998 3 46652111 1233 444442 454322111 1111 1 3588899999998 8888
Q ss_pred EeCCCCeeeEEEE--ec-cCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEE-eCCeEEEEEEECCCCce
Q 008927 318 TDRKNGFWNLHKW--IE-SNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHSL 393 (548)
Q Consensus 318 sd~~~g~~~Ly~~--d~-~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~-~~g~~~L~~~dl~~g~~ 393 (548)
.+. .|..+|++- -. ++|+ ..|+... ... +. ........|. ++..|+.... .++...++++++++...
T Consensus 473 ~~~-~g~~~v~va~V~R~~~G~-~~l~~~~-~l~-~~-l~~v~~~~W~----~~~sL~Vlg~~~~~~~~v~~v~vdG~~~ 543 (599)
T PRK13613 473 VEK-DGRRSLQIGRIVRDAKAV-VSVEEFR-SLA-PE-LEDVTDMSWA----GDSQLVVLGREEGGVQQARYVQVDGSTP 543 (599)
T ss_pred Eec-CCCcEEEEEEEEeCCCCc-EEeeccE-Eec-cC-CCccceeEEc----CCCEEEEEeccCCCCcceEEEecCCcCc
Confidence 775 444455433 22 2344 3443110 000 00 0012234565 5667766443 44577889998875544
Q ss_pred E
Q 008927 394 S 394 (548)
Q Consensus 394 ~ 394 (548)
.
T Consensus 544 ~ 544 (599)
T PRK13613 544 P 544 (599)
T ss_pred c
Confidence 3
No 197
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.09 E-value=8.6 Score=40.05 Aligned_cols=183 Identities=9% Similarity=0.056 Sum_probs=86.7
Q ss_pred eEEEEEECCCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCc
Q 008927 221 TEIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 299 (548)
Q Consensus 221 ~~l~~idl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~ 299 (548)
..|+.+|.++|+ ..--.. .....+.|.+. |+ +|+ +.. ....|+.+|.++ |++ ..+.-.... ..
T Consensus 130 g~l~ald~~tG~---~~W~~~~~~~~~ssP~v~-~~-~v~-v~~-------~~g~l~ald~~t-G~~-~W~~~~~~~-~~ 193 (394)
T PRK11138 130 GQVYALNAEDGE---VAWQTKVAGEALSRPVVS-DG-LVL-VHT-------SNGMLQALNESD-GAV-KWTVNLDVP-SL 193 (394)
T ss_pred CEEEEEECCCCC---CcccccCCCceecCCEEE-CC-EEE-EEC-------CCCEEEEEEccC-CCE-eeeecCCCC-cc
Confidence 479999999997 332222 12234556665 33 343 331 135799999884 652 111111110 00
Q ss_pred -ccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcc-cccCcceeeeeecCCCCEEEEEEEe
Q 008927 300 -VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW-VFGINSYEIIQSHGEKNLIACSYRQ 377 (548)
Q Consensus 300 -~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w-~~~~~~~~~~~~~~d~~~l~~~~~~ 377 (548)
......|.-. +|.+++... + ..|+.+++++|+..--.+.....+.... ........+.- .++.+|+.. .
T Consensus 194 ~~~~~~sP~v~-~~~v~~~~~--~--g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v---~~~~vy~~~-~ 264 (394)
T PRK11138 194 TLRGESAPATA-FGGAIVGGD--N--GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV---VGGVVYALA-Y 264 (394)
T ss_pred cccCCCCCEEE-CCEEEEEcC--C--CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE---ECCEEEEEE-c
Confidence 0012334432 344444332 2 3588888888875321110000000000 00000001111 356666544 2
Q ss_pred CCeEEEEEEECCCCceEeecCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 378 NGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 378 ~g~~~L~~~dl~~g~~~~l~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
+ ..|+.+|+.+|+..-- .+......+..+++.+|+... ...|+.+|+++|+
T Consensus 265 ~--g~l~ald~~tG~~~W~-~~~~~~~~~~~~~~~vy~~~~----~g~l~ald~~tG~ 315 (394)
T PRK11138 265 N--GNLVALDLRSGQIVWK-REYGSVNDFAVDGGRIYLVDQ----NDRVYALDTRGGV 315 (394)
T ss_pred C--CeEEEEECCCCCEEEe-ecCCCccCcEEECCEEEEEcC----CCeEEEEECCCCc
Confidence 3 4689999999975321 111111123456777777643 3689999998886
No 198
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.98 E-value=11 Score=41.10 Aligned_cols=93 Identities=14% Similarity=0.009 Sum_probs=49.1
Q ss_pred EEEEEeCC-CCeEEEEeCCCCCCCceecCCCCCC-------------CCc-----eecceeeCCCCCEEEEEEeccCCCC
Q 008927 156 TVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYGE-------------PLV-----SYADGIFDPRFNRYVTVREDRRQDA 216 (548)
Q Consensus 156 ~i~F~~~~-~~~Ly~~~~~~~~~~~~~lT~~~~~-------------~~~-----~~~~~~~SpDG~~i~~v~~~~~~~~ 216 (548)
+-+|++++ +.+|-|++++. =+..+|+.-+.. ..+ ++.-| ++|||+.+.-.
T Consensus 142 r~~findk~n~Rvari~l~~--~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~P-lpnDGk~l~~~-------- 210 (635)
T PRK02888 142 RYLFINDKANTRVARIRLDV--MKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIP-LPNDGKDLDDP-------- 210 (635)
T ss_pred eEEEEecCCCcceEEEECcc--EeeceeEeCCCccCccccCccccCCccEEEeCcccccc-cCCCCCEeecc--------
Confidence 56677765 56899988864 333344332100 000 11111 45666644211
Q ss_pred CCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEE
Q 008927 217 LNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE 262 (548)
Q Consensus 217 ~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~ 262 (548)
.+.++-+-.||.++-+. ..+++..+ ......++|||++++..+
T Consensus 211 ~ey~~~vSvID~etmeV-~~qV~Vdg--npd~v~~spdGk~afvTs 253 (635)
T PRK02888 211 KKYRSLFTAVDAETMEV-AWQVMVDG--NLDNVDTDYDGKYAFSTC 253 (635)
T ss_pred cceeEEEEEEECccceE-EEEEEeCC--CcccceECCCCCEEEEec
Confidence 23467788899887651 01222322 223457899999876554
No 199
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=93.88 E-value=6.9 Score=39.68 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=88.5
Q ss_pred eeEEECCEEEEEeCCCC--eEEEEeCCCCCCCceecCCCC---CCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 008927 149 AFRIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~--~Ly~~~~~~~~~~~~~lT~~~---~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l 223 (548)
.|+|.++.++-+-.+|. .||.++-. +-.+.||.-. .+..-+..-..|.|-..-|++.+.- .+.+
T Consensus 88 ~w~PfnD~vIASgSeD~~v~vW~IPe~---~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~--------Dn~v 156 (472)
T KOG0303|consen 88 DWCPFNDCVIASGSEDTKVMVWQIPEN---GLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS--------DNTV 156 (472)
T ss_pred ccCccCCceeecCCCCceEEEEECCCc---ccccCcccceEEEeecceeEEEEeecccchhhHhhccC--------CceE
Confidence 68898887666544444 67777644 3333343210 0012356666788876666554321 2578
Q ss_pred EEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCce-eeeEEEcCCCCCcccC
Q 008927 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVES 302 (548)
Q Consensus 224 ~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~-~~~~~l~~~~~~~~~~ 302 (548)
..+|+.+|+ .-+-...++.+.+..|+-||.+|+-... ...|.+.|... |++ .+.....+ ..
T Consensus 157 ~iWnv~tge---ali~l~hpd~i~S~sfn~dGs~l~Ttck--------DKkvRv~dpr~-~~~v~e~~~heG------~k 218 (472)
T KOG0303|consen 157 SIWNVGTGE---ALITLDHPDMVYSMSFNRDGSLLCTTCK--------DKKVRVIDPRR-GTVVSEGVAHEG------AK 218 (472)
T ss_pred EEEeccCCc---eeeecCCCCeEEEEEeccCCceeeeecc--------cceeEEEcCCC-CcEeeecccccC------CC
Confidence 999999997 3322336777777899999999885542 34688888774 542 11111111 33
Q ss_pred CcCceECcCCcEEEEE--eCCCCeeeEEEEec
Q 008927 303 PTEPKWSSKGELFFVT--DRKNGFWNLHKWIE 332 (548)
Q Consensus 303 ~~~~~wspDG~L~~~s--d~~~g~~~Ly~~d~ 332 (548)
.....|..||+ ++.+ .+ ....++-++|+
T Consensus 219 ~~Raifl~~g~-i~tTGfsr-~seRq~aLwdp 248 (472)
T KOG0303|consen 219 PARAIFLASGK-IFTTGFSR-MSERQIALWDP 248 (472)
T ss_pred cceeEEeccCc-eeeecccc-ccccceeccCc
Confidence 45678988887 3332 12 22334555554
No 200
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=93.80 E-value=0.064 Score=55.32 Aligned_cols=64 Identities=30% Similarity=0.447 Sum_probs=42.0
Q ss_pred CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534 (548)
Q Consensus 461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG 534 (548)
.+.|.++- +|.+|.|+|..|.. ++++|+||. -||--+--.+-+.....+|+.||+++|.++.=|
T Consensus 165 i~~v~iP~--eg~~I~g~LhlP~~-------~~p~P~VIv-~gGlDs~qeD~~~l~~~~l~~rGiA~LtvDmPG 228 (411)
T PF06500_consen 165 IEEVEIPF--EGKTIPGYLHLPSG-------EKPYPTVIV-CGGLDSLQEDLYRLFRDYLAPRGIAMLTVDMPG 228 (411)
T ss_dssp EEEEEEEE--TTCEEEEEEEESSS-------SS-EEEEEE-E--TTS-GGGGHHHHHCCCHHCT-EEEEE--TT
T ss_pred cEEEEEee--CCcEEEEEEEcCCC-------CCCCCEEEE-eCCcchhHHHHHHHHHHHHHhCCCEEEEEccCC
Confidence 47788887 46899999999963 567897766 566554444434445567899999999999865
No 201
>PRK00870 haloalkane dehalogenase; Provisional
Probab=93.79 E-value=0.2 Score=50.05 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=41.2
Q ss_pred CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
....++.... ||..+.-. |...+. . .-|.||++||.|.... .|...+..|+++||.|+.+|.||-
T Consensus 20 ~~~~~~~~~~-~~~~~~i~-y~~~G~------~-~~~~lvliHG~~~~~~--~w~~~~~~L~~~gy~vi~~Dl~G~ 84 (302)
T PRK00870 20 APHYVDVDDG-DGGPLRMH-YVDEGP------A-DGPPVLLLHGEPSWSY--LYRKMIPILAAAGHRVIAPDLIGF 84 (302)
T ss_pred CceeEeecCC-CCceEEEE-EEecCC------C-CCCEEEEECCCCCchh--hHHHHHHHHHhCCCEEEEECCCCC
Confidence 3455666654 56543322 333220 1 2367899999875433 456666778888999999999973
No 202
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.73 E-value=4.6 Score=39.79 Aligned_cols=152 Identities=11% Similarity=0.101 Sum_probs=86.5
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCC--CCCceecceeeCCC--CCEEEEEEeccCCCCCCceeEEEE
Q 008927 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG--EPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVA 225 (548)
Q Consensus 150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~--~~~~~~~~~~~SpD--G~~i~~v~~~~~~~~~~~~~~l~~ 225 (548)
...+.++|+-.. .+.||++.... .++++-.... ++. . -.+..|. -..|+| |+....+|-+
T Consensus 100 V~l~r~riVvvl--~~~I~VytF~~---n~k~l~~~et~~NPk-G--lC~~~~~~~k~~Laf--------Pg~k~GqvQi 163 (346)
T KOG2111|consen 100 VKLRRDRIVVVL--ENKIYVYTFPD---NPKLLHVIETRSNPK-G--LCSLCPTSNKSLLAF--------PGFKTGQVQI 163 (346)
T ss_pred EEEcCCeEEEEe--cCeEEEEEcCC---ChhheeeeecccCCC-c--eEeecCCCCceEEEc--------CCCccceEEE
Confidence 344567777776 66788888763 4555533210 000 1 1123332 122233 1223468888
Q ss_pred EECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcC
Q 008927 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (548)
Q Consensus 226 idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~ 305 (548)
+|+......++..+.....-.+-.+++-+|..||=.+ . .++=|.+.|-..++.+.|.+. |.+ . ..+..
T Consensus 164 ~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS-t------kGTLIRIFdt~~g~~l~E~RR--G~d-~--A~iy~ 231 (346)
T KOG2111|consen 164 VDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS-T------KGTLIRIFDTEDGTLLQELRR--GVD-R--ADIYC 231 (346)
T ss_pred EEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec-c------CcEEEEEEEcCCCcEeeeeec--CCc-h--heEEE
Confidence 8998765111244443333466778999999998333 2 257788888874333333222 111 2 45678
Q ss_pred ceECcCCc-EEEEEeCCCCeeeEEEEe
Q 008927 306 PKWSSKGE-LFFVTDRKNGFWNLHKWI 331 (548)
Q Consensus 306 ~~wspDG~-L~~~sd~~~g~~~Ly~~d 331 (548)
..||||+. |++.+|+ |.-+||.+.
T Consensus 232 iaFSp~~s~LavsSdK--gTlHiF~l~ 256 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDK--GTLHIFSLR 256 (346)
T ss_pred EEeCCCccEEEEEcCC--CeEEEEEee
Confidence 89999999 7777776 666777654
No 203
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.41 E-value=11 Score=39.10 Aligned_cols=207 Identities=13% Similarity=0.067 Sum_probs=111.0
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
...+++.+++-.....+.+.+++.... .....+..+ ..-..+.++|+++.++...... ..+.+.++|.
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~-~~~~~~~vG-----~~P~~~~~~~~~~~vYV~n~~~------~~~~vsvid~ 147 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATN-TVLGSIPVG-----LGPVGLAVDPDGKYVYVANAGN------GNNTVSVIDA 147 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCccc-ceeeEeeec-----cCCceEEECCCCCEEEEEeccc------CCceEEEEeC
Confidence 344455556555555678888886541 111122211 1234568999999875542211 1367999999
Q ss_pred CCCCccCcEE-eeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCC-CCCcccCCcCc
Q 008927 229 NGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF-DPTIVESPTEP 306 (548)
Q Consensus 229 ~~g~~~~~~~-L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~-~~~~~~~~~~~ 306 (548)
.+.. ... +..+..- ..-.++|||++++ +... ....|.+++.+. ..+ ..-... ...........
T Consensus 148 ~t~~---~~~~~~vG~~P-~~~a~~p~g~~vy-v~~~------~~~~v~vi~~~~-~~v---~~~~~~~~~~~~~~P~~i 212 (381)
T COG3391 148 ATNK---VTATIPVGNTP-TGVAVDPDGNKVY-VTNS------DDNTVSVIDTSG-NSV---VRGSVGSLVGVGTGPAGI 212 (381)
T ss_pred CCCe---EEEEEecCCCc-ceEEECCCCCeEE-EEec------CCCeEEEEeCCC-cce---eccccccccccCCCCceE
Confidence 8876 322 2222211 3557999999875 5521 256788888653 221 110000 00000344667
Q ss_pred eECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec-ccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927 307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (548)
Q Consensus 307 ~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~-~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~ 385 (548)
.++|||+.+|+.+..+....+..+|..++.+.... +... . +..+ ....| +++.+|..... ...++.
T Consensus 213 ~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~----~-~~~~---v~~~p---~g~~~yv~~~~--~~~V~v 279 (381)
T COG3391 213 AVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS----G-APRG---VAVDP---AGKAAYVANSQ--GGTVSV 279 (381)
T ss_pred EECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc----C-CCCc---eeECC---CCCEEEEEecC--CCeEEE
Confidence 89999995555544243457888998887765441 1111 0 1111 22333 67766654333 456777
Q ss_pred EECCCCceEe
Q 008927 386 LDDFGHSLSL 395 (548)
Q Consensus 386 ~dl~~g~~~~ 395 (548)
+|..+..+..
T Consensus 280 id~~~~~v~~ 289 (381)
T COG3391 280 IDGATDRVVK 289 (381)
T ss_pred EeCCCCceee
Confidence 8876655443
No 204
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=93.35 E-value=2.2 Score=44.38 Aligned_cols=177 Identities=12% Similarity=0.173 Sum_probs=95.8
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE---eee-cCCceeeeEECCCCCEEEEEEecCCCC
Q 008927 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV---LVS-GSDFYAFPRMDPRGERMAWIEWHHPNM 268 (548)
Q Consensus 193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~---L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~ 268 (548)
+....++|||+.|+.--+ -..|-++||..-. +++ |+. +...| ..+.|||.| |+|..-.
T Consensus 468 iRSckL~pdgrtLivGGe---------astlsiWDLAapT---prikaeltssapaCy-ALa~spDak-vcFsccs---- 529 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGE---------ASTLSIWDLAAPT---PRIKAELTSSAPACY-ALAISPDAK-VCFSCCS---- 529 (705)
T ss_pred eeeeEecCCCceEEeccc---------cceeeeeeccCCC---cchhhhcCCcchhhh-hhhcCCccc-eeeeecc----
Confidence 446779999998766322 2467788888765 332 332 22233 457899987 6776633
Q ss_pred CCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccC
Q 008927 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFS 348 (548)
Q Consensus 269 p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~ 348 (548)
..+|.|.|+.. .. .++.+.+.. ....-...++||.-++..-. + ..+-.+|+..+. ++. +.||.
T Consensus 530 ---dGnI~vwDLhn-q~--~VrqfqGht----DGascIdis~dGtklWTGGl-D--ntvRcWDlregr--qlq--qhdF~ 592 (705)
T KOG0639|consen 530 ---DGNIAVWDLHN-QT--LVRQFQGHT----DGASCIDISKDGTKLWTGGL-D--NTVRCWDLREGR--QLQ--QHDFS 592 (705)
T ss_pred ---CCcEEEEEccc-ce--eeecccCCC----CCceeEEecCCCceeecCCC-c--cceeehhhhhhh--hhh--hhhhh
Confidence 35688889873 32 245565544 33455677888872233111 1 124455654432 222 23444
Q ss_pred CCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCceeEee--eecCCEEEE
Q 008927 349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFV 415 (548)
Q Consensus 349 ~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~~--s~d~~~l~~ 415 (548)
...+++| |.+ .+++|++... + .++.++.....+..+|......+-.+ +..|++++-
T Consensus 593 SQIfSLg---~cP-----~~dWlavGMe-n--s~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvS 650 (705)
T KOG0639|consen 593 SQIFSLG---YCP-----TGDWLAVGME-N--SNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVS 650 (705)
T ss_pred hhheecc---cCC-----Cccceeeecc-c--CcEEEEecCCccceeecccccEEEEEEecccCceeee
Confidence 4333333 333 5677765443 2 33445554444455666554444444 567775543
No 205
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=93.33 E-value=8.5 Score=37.51 Aligned_cols=153 Identities=12% Similarity=0.127 Sum_probs=74.4
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEec-cCCCCCCceeEEEEEECCCCC--ccCcEEee
Q 008927 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRED-RRQDALNSTTEIVAIALNGQN--IQEPKVLV 240 (548)
Q Consensus 164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~-~~~~~~~~~~~l~~idl~~g~--~~~~~~L~ 240 (548)
++|+.++.++. +.-+.+..........+-++.-+|-.++|+..+.. ..+...-....||.|+-.-+. ..+...+.
T Consensus 39 dNqVhll~~d~--e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 39 DNQVHLLRLDS--EGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred cceeEEEEecC--ccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 57888887764 22222211110112234455667866777665443 222111123457776544332 11111121
Q ss_pred ----ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc--CCc-
Q 008927 241 ----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGE- 313 (548)
Q Consensus 241 ----~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp--DG~- 313 (548)
+.-+...-..|-|++++|+-+. ..+|.+.+++.+.++. ..+......+.......-.||| ||.
T Consensus 117 ~Ldteavg~i~cvew~Pns~klasm~---------dn~i~l~~l~ess~~v-aev~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSDKLASMD---------DNNIVLWSLDESSKIV-AEVLSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred cCCHHHhCceeeEEEcCCCCeeEEec---------cCceEEEEcccCcchh-eeecccccccccceecccccCCCCccce
Confidence 1122344567999999998654 2457777777433211 1122111101013456778998 677
Q ss_pred EEEEEeCCCCeeeEEEEecc
Q 008927 314 LFFVTDRKNGFWNLHKWIES 333 (548)
Q Consensus 314 L~~~sd~~~g~~~Ly~~d~~ 333 (548)
+...+|. .|..+|..
T Consensus 187 v~tt~d~-----tl~~~D~R 201 (370)
T KOG1007|consen 187 VATTSDS-----TLQFWDLR 201 (370)
T ss_pred EEEeCCC-----cEEEEEcc
Confidence 6555555 45556654
No 206
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=93.31 E-value=1.3 Score=48.87 Aligned_cols=91 Identities=10% Similarity=0.139 Sum_probs=56.4
Q ss_pred eEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (548)
Q Consensus 221 ~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~ 300 (548)
..|.++|..+.+. .|.+-...+......||||||||+-.+. .+.|.+.|+.. +.+-....+.
T Consensus 556 f~I~vvD~~t~kv--vR~f~gh~nritd~~FS~DgrWlisasm--------D~tIr~wDlpt-~~lID~~~vd------- 617 (910)
T KOG1539|consen 556 FSIRVVDVVTRKV--VREFWGHGNRITDMTFSPDGRWLISASM--------DSTIRTWDLPT-GTLIDGLLVD------- 617 (910)
T ss_pred eeEEEEEchhhhh--hHHhhccccceeeeEeCCCCcEEEEeec--------CCcEEEEeccC-cceeeeEecC-------
Confidence 5788999888762 3333333445778899999999985442 35688899985 4321111121
Q ss_pred cCCcCceECcCCcEEEEEeCCCCeeeEEEEe
Q 008927 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWI 331 (548)
Q Consensus 301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d 331 (548)
..+....+||+|+++..+-. +...||++.
T Consensus 618 ~~~~sls~SPngD~LAT~Hv--d~~gIylWs 646 (910)
T KOG1539|consen 618 SPCTSLSFSPNGDFLATVHV--DQNGIYLWS 646 (910)
T ss_pred CcceeeEECCCCCEEEEEEe--cCceEEEEE
Confidence 23567899999994444322 223466663
No 207
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=93.31 E-value=1.7 Score=45.19 Aligned_cols=91 Identities=19% Similarity=0.335 Sum_probs=56.9
Q ss_pred eEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc-eeeeEEEcCCCCCc
Q 008927 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTI 299 (548)
Q Consensus 221 ~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~-~~~~~~l~~~~~~~ 299 (548)
...+++|.++.. ...+.......+-.++||||..||.-+ + ...||++.++.+|. ........+
T Consensus 428 G~w~V~d~e~~~---lv~~~~d~~~ls~v~ysp~G~~lAvgs--~------d~~iyiy~Vs~~g~~y~r~~k~~g----- 491 (626)
T KOG2106|consen 428 GRWFVLDTETQD---LVTIHTDNEQLSVVRYSPDGAFLAVGS--H------DNHIYIYRVSANGRKYSRVGKCSG----- 491 (626)
T ss_pred ceEEEEecccce---eEEEEecCCceEEEEEcCCCCEEEEec--C------CCeEEEEEECCCCcEEEEeeeecC-----
Confidence 467888988865 444443355567779999999999544 2 34688888887664 111122222
Q ss_pred ccCCcCceECcCCcEEEEEeCCCCeeeEEEEe
Q 008927 300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWI 331 (548)
Q Consensus 300 ~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d 331 (548)
..+..+.||+|++.+ +++. +-++|..+.
T Consensus 492 -s~ithLDwS~Ds~~~-~~~S--~d~eiLyW~ 519 (626)
T KOG2106|consen 492 -SPITHLDWSSDSQFL-VSNS--GDYEILYWK 519 (626)
T ss_pred -ceeEEeeecCCCceE-Eecc--CceEEEEEc
Confidence 246778999999633 4433 445555553
No 208
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=93.26 E-value=0.12 Score=50.16 Aligned_cols=52 Identities=19% Similarity=0.202 Sum_probs=37.4
Q ss_pred EEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927 477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537 (548)
Q Consensus 477 g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG 537 (548)
-.+|.|+. ...||+||+.||=- ....-|....+.+||.||+|+.++...-.+
T Consensus 6 l~v~~P~~-------~g~yPVv~f~~G~~--~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~ 57 (259)
T PF12740_consen 6 LLVYYPSS-------AGTYPVVLFLHGFL--LINSWYSQLLEHVASHGYIVVAPDLYSIGG 57 (259)
T ss_pred eEEEecCC-------CCCcCEEEEeCCcC--CCHHHHHHHHHHHHhCceEEEEecccccCC
Confidence 35778864 35799999999954 111125566788999999999999655444
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.24 E-value=1.7 Score=44.07 Aligned_cols=158 Identities=11% Similarity=-0.001 Sum_probs=84.7
Q ss_pred eeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCC---C-EEEEEEeccCCCCCCceeEE
Q 008927 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF---N-RYVTVREDRRQDALNSTTEI 223 (548)
Q Consensus 148 ~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG---~-~i~~v~~~~~~~~~~~~~~l 223 (548)
-.|++||+.|+++......+|-.+. | .....+|+.. ....+....|+.|+ . +|+.+..+.+ .-.+
T Consensus 192 L~FS~dgk~lasig~d~~~VW~~~~-g--~~~a~~t~~~--k~~~~~~cRF~~d~~~~~l~laa~~~~~~------~v~~ 260 (398)
T KOG0771|consen 192 LDFSPDGKFLASIGADSARVWSVNT-G--AALARKTPFS--KDEMFSSCRFSVDNAQETLRLAASQFPGG------GVRL 260 (398)
T ss_pred ceeCCCCcEEEEecCCceEEEEecc-C--chhhhcCCcc--cchhhhhceecccCCCceEEEEEecCCCC------ceeE
Confidence 4789999999998755557776553 2 3446677642 35678888888776 2 2222222221 1122
Q ss_pred EEEECCCC-CccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccC
Q 008927 224 VAIALNGQ-NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (548)
Q Consensus 224 ~~idl~~g-~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~ 302 (548)
+.+-+..+ +....++........+...+|+||+.+|.-. . ...+-+++... ++....+.... . ..
T Consensus 261 ~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT-~-------dGsVai~~~~~---lq~~~~vk~aH-~--~~ 326 (398)
T KOG0771|consen 261 CDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT-M-------DGSVAIYDAKS---LQRLQYVKEAH-L--GF 326 (398)
T ss_pred EEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec-c-------CCcEEEEEece---eeeeEeehhhh-e--ee
Confidence 33333333 1000333333344567889999999998544 2 23566666542 21122222111 1 45
Q ss_pred CcCceECcCCc-EEEEEeCCCCeeeEEEEec
Q 008927 303 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 332 (548)
Q Consensus 303 ~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~ 332 (548)
+....|+||.+ +.=++- +...+|..+..
T Consensus 327 VT~ltF~Pdsr~~~svSs--~~~~~v~~l~v 355 (398)
T KOG0771|consen 327 VTGLTFSPDSRYLASVSS--DNEAAVTKLAV 355 (398)
T ss_pred eeeEEEcCCcCccccccc--CCceeEEEEee
Confidence 77889999976 443332 22334555543
No 210
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=93.11 E-value=0.087 Score=52.20 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=32.6
Q ss_pred CcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 495 ~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
-|+|+++||=|+..+. |...+-.|+++||.|+.+|.||.
T Consensus 44 gP~illlHGfPe~wys--wr~q~~~la~~~~rviA~DlrGy 82 (322)
T KOG4178|consen 44 GPIVLLLHGFPESWYS--WRHQIPGLASRGYRVIAPDLRGY 82 (322)
T ss_pred CCEEEEEccCCccchh--hhhhhhhhhhcceEEEecCCCCC
Confidence 4999999999997764 34445579999999999999984
No 211
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.97 E-value=13 Score=38.46 Aligned_cols=227 Identities=12% Similarity=0.076 Sum_probs=107.8
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (548)
Q Consensus 151 ~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~ 229 (548)
..+++.|++.. .++.||.+|.+. |+.. +.... ......+.. +++.|++. .. ...|+.+|++
T Consensus 102 ~v~~~~v~v~~-~~g~l~ald~~t--G~~~W~~~~~----~~~~~~p~v--~~~~v~v~-~~--------~g~l~a~d~~ 163 (377)
T TIGR03300 102 GADGGLVFVGT-EKGEVIALDAED--GKELWRAKLS----SEVLSPPLV--ANGLVVVR-TN--------DGRLTALDAA 163 (377)
T ss_pred EEcCCEEEEEc-CCCEEEEEECCC--CcEeeeeccC----ceeecCCEE--ECCEEEEE-CC--------CCeEEEEEcC
Confidence 34566666543 467899999875 4432 22111 112233333 23444442 21 2479999999
Q ss_pred CCCccCcEEeeec--CC----ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCC----c
Q 008927 230 GQNIQEPKVLVSG--SD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT----I 299 (548)
Q Consensus 230 ~g~~~~~~~L~~~--~~----~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~----~ 299 (548)
+|+ ..--... .. ....|... ++ .+ |+.. ....++.+|++. |+..-...+...... .
T Consensus 164 tG~---~~W~~~~~~~~~~~~~~~sp~~~-~~-~v-~~~~-------~~g~v~ald~~t-G~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 164 TGE---RLWTYSRVTPALTLRGSASPVIA-DG-GV-LVGF-------AGGKLVALDLQT-GQPLWEQRVALPKGRTELER 229 (377)
T ss_pred CCc---eeeEEccCCCceeecCCCCCEEE-CC-EE-EEEC-------CCCEEEEEEccC-CCEeeeeccccCCCCCchhh
Confidence 987 3221111 10 11234433 33 33 3431 135788888873 542101111110000 0
Q ss_pred -ccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC
Q 008927 300 -VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (548)
Q Consensus 300 -~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~ 378 (548)
......|.. .++.+|+.+ . .| .|+.+|+++|+..--... . .+ ..... +++.||+..
T Consensus 230 ~~~~~~~p~~-~~~~vy~~~-~-~g--~l~a~d~~tG~~~W~~~~----~--~~----~~p~~-----~~~~vyv~~--- 286 (377)
T TIGR03300 230 LVDVDGDPVV-DGGQVYAVS-Y-QG--RVAALDLRSGRVLWKRDA----S--SY----QGPAV-----DDNRLYVTD--- 286 (377)
T ss_pred hhccCCccEE-ECCEEEEEE-c-CC--EEEEEECCCCcEEEeecc----C--Cc----cCceE-----eCCEEEEEC---
Confidence 001123433 234355544 3 33 588999988875422210 0 11 11122 466777653
Q ss_pred CeEEEEEEECCCCceE-ee-cCCCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 379 GRSYLGILDDFGHSLS-LL-DIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 379 g~~~L~~~dl~~g~~~-~l-~~~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
....|+.+|..+|+.. .. .............++.+++... -..|+.+|.++++.
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~----~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDF----EGYLHWLSREDGSF 342 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeC----CCEEEEEECCCCCE
Confidence 3457899999888653 12 1111122222335666655432 35799999888874
No 212
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=92.91 E-value=6.6 Score=39.83 Aligned_cols=201 Identities=10% Similarity=0.055 Sum_probs=104.6
Q ss_pred cCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCC--CC-CccccceeeCCeeeEEECCEEEEEeCCCCe
Q 008927 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPK--EY-AVRTTAQEYGGGAFRIFGDTVIFSNYKDQR 166 (548)
Q Consensus 91 ~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~--~~-~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~ 166 (548)
+-+..|+| ++.+.-. -.|+-..-||.+... +-.+.|+.. .. .-.-+| |--.|-|.-.-|+++...++.
T Consensus 84 vLDi~w~PfnD~vIAS---gSeD~~v~vW~IPe~--~l~~~ltepvv~L~gH~rrV---g~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 84 VLDIDWCPFNDCVIAS---GSEDTKVMVWQIPEN--GLTRDLTEPVVELYGHQRRV---GLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred ccccccCccCCceeec---CCCCceEEEEECCCc--ccccCcccceEEEeecceeE---EEEeecccchhhHhhccCCce
Confidence 34667788 6665332 223456667877655 345555521 00 000111 223566666667777777777
Q ss_pred EEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc
Q 008927 167 LYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (548)
Q Consensus 167 Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~ 245 (548)
+..-+..+ |+. ..|.. +..+-+..|+-||..++.++.|. .|-++|..+|+ ++.++...
T Consensus 156 v~iWnv~t--geali~l~h-----pd~i~S~sfn~dGs~l~TtckDK---------kvRv~dpr~~~-----~v~e~~~h 214 (472)
T KOG0303|consen 156 VSIWNVGT--GEALITLDH-----PDMVYSMSFNRDGSLLCTTCKDK---------KVRVIDPRRGT-----VVSEGVAH 214 (472)
T ss_pred EEEEeccC--CceeeecCC-----CCeEEEEEeccCCceeeeecccc---------eeEEEcCCCCc-----Eeeecccc
Confidence 76667766 443 34442 12455678999999988877664 47778888876 33333111
Q ss_pred ----eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCC
Q 008927 246 ----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 321 (548)
Q Consensus 246 ----~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~ 321 (548)
-.-..|--||+ |+ .. ....| ...++-+.|.+.-.+.-....+... ..+.-|.|.+|.+++|+.-++
T Consensus 215 eG~k~~Raifl~~g~-i~-tT-Gfsr~--seRq~aLwdp~nl~eP~~~~elDtS-----nGvl~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 215 EGAKPARAIFLASGK-IF-TT-GFSRM--SERQIALWDPNNLEEPIALQELDTS-----NGVLLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred cCCCcceeEEeccCc-ee-ee-ccccc--cccceeccCcccccCcceeEEeccC-----CceEEeeecCCCCEEEEEecC
Confidence 11224556676 33 22 11111 2233433333211110011223222 346678899998877776664
Q ss_pred CCeeeEEEE
Q 008927 322 NGFWNLHKW 330 (548)
Q Consensus 322 ~g~~~Ly~~ 330 (548)
++.-+-|-+
T Consensus 285 D~~IRYyEi 293 (472)
T KOG0303|consen 285 DSSIRYFEI 293 (472)
T ss_pred CcceEEEEe
Confidence 554444444
No 213
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.90 E-value=17 Score=39.95 Aligned_cols=59 Identities=17% Similarity=0.248 Sum_probs=34.0
Q ss_pred eCCee--eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEE
Q 008927 145 YGGGA--FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTV 208 (548)
Q Consensus 145 ygg~~--~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v 208 (548)
|.||. |+.+|+.| |+.. ...|-.+++.+ +... ++....+......++..+||++.|+..
T Consensus 20 YtGG~~~~s~nG~~L-~t~~-~d~Vi~idv~t--~~~~-l~s~~~ed~d~ita~~l~~d~~~L~~a 80 (775)
T KOG0319|consen 20 YTGGPVAWSSNGQHL-YTAC-GDRVIIIDVAT--GSIA-LPSGSNEDEDEITALALTPDEEVLVTA 80 (775)
T ss_pred ecCCceeECCCCCEE-EEec-CceEEEEEccC--Ccee-cccCCccchhhhheeeecCCccEEEEe
Confidence 44543 44455544 4432 33577788876 4332 444332234557778899998887664
No 214
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.86 E-value=4.9 Score=41.52 Aligned_cols=109 Identities=12% Similarity=0.169 Sum_probs=56.9
Q ss_pred EEEEEECCC--CCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEE-EecCCCcee-ee-EEEcCCC
Q 008927 222 EIVAIALNG--QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG-YISENGDVY-KR-VCVAGFD 296 (548)
Q Consensus 222 ~l~~idl~~--g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~-~~~~~g~~~-~~-~~l~~~~ 296 (548)
+|++++-.. |...+.+++.++...-....+.+|| | |++ . ..+|+.+ +.+.++... +. .++.+..
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--l-yV~-~-------~~~i~~~~d~~gdg~ad~~~~~l~~~~~ 116 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--V-YVA-T-------PPDILFLRDKDGDDKADGEREVLLSGFG 116 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--E-EEe-C-------CCeEEEEeCCCCCCCCCCccEEEEEccC
Confidence 677776532 2211134555554444566788888 3 454 1 2357655 444333221 22 2333221
Q ss_pred CC---cccCCcCceECcCCcEEEEEe-CCC---------------CeeeEEEEeccCCeeEeec
Q 008927 297 PT---IVESPTEPKWSSKGELFFVTD-RKN---------------GFWNLHKWIESNNEVLAIY 341 (548)
Q Consensus 297 ~~---~~~~~~~~~wspDG~L~~~sd-~~~---------------g~~~Ly~~d~~~g~~~~l~ 341 (548)
.. .......+.|.|||+||+..- ... -...++++++++++.+.+.
T Consensus 117 ~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a 180 (367)
T TIGR02604 117 GQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVA 180 (367)
T ss_pred CCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEe
Confidence 00 002355789999999888532 100 0135899999888776554
No 215
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=92.83 E-value=0.11 Score=54.10 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=36.3
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee-cCCceeeeEECCCCCEEE
Q 008927 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMA 259 (548)
Q Consensus 193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La 259 (548)
+..+.|||||+.|++|+.|. .|-+.|-++.+ ..-+.. --+-..-..||||||+|+
T Consensus 293 in~f~FS~DG~~LA~VSqDG---------fLRvF~fdt~e---Llg~mkSYFGGLLCvcWSPDGKyIv 348 (636)
T KOG2394|consen 293 INEFAFSPDGKYLATVSQDG---------FLRIFDFDTQE---LLGVMKSYFGGLLCVCWSPDGKYIV 348 (636)
T ss_pred ccceeEcCCCceEEEEecCc---------eEEEeeccHHH---HHHHHHhhccceEEEEEcCCccEEE
Confidence 44688999999999997663 56666766654 222221 111123458999999987
No 216
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=92.76 E-value=12 Score=37.65 Aligned_cols=156 Identities=12% Similarity=0.053 Sum_probs=88.5
Q ss_pred CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCC
Q 008927 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (548)
Q Consensus 243 ~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~ 322 (548)
.+.......+|+...++ .. .. ...-|+.++. .|+ ..-.+++.. .++....||.||.++...|. +
T Consensus 64 ~~svFavsl~P~~~l~a-TG--Gg-----DD~AflW~~~-~ge--~~~eltgHK----DSVt~~~FshdgtlLATGdm-s 127 (399)
T KOG0296|consen 64 TDSVFAVSLHPNNNLVA-TG--GG-----DDLAFLWDIS-TGE--FAGELTGHK----DSVTCCSFSHDGTLLATGDM-S 127 (399)
T ss_pred CCceEEEEeCCCCceEE-ec--CC-----CceEEEEEcc-CCc--ceeEecCCC----CceEEEEEccCceEEEecCC-C
Confidence 33344557788555333 32 11 2345666776 454 245567765 68999999999998888887 7
Q ss_pred CeeeEEEEeccCCeeE-eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCC-C
Q 008927 323 GFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP-F 400 (548)
Q Consensus 323 g~~~Ly~~d~~~g~~~-~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~-~ 400 (548)
|.-.||..+ +|..+ .+..+ .+...|. .|-| . ..|++.-..+|. ++.+.+..+...++-.+ .
T Consensus 128 G~v~v~~~s--tg~~~~~~~~e---~~dieWl------~WHp---~-a~illAG~~DGs--vWmw~ip~~~~~kv~~Gh~ 190 (399)
T KOG0296|consen 128 GKVLVFKVS--TGGEQWKLDQE---VEDIEWL------KWHP---R-AHILLAGSTDGS--VWMWQIPSQALCKVMSGHN 190 (399)
T ss_pred ccEEEEEcc--cCceEEEeecc---cCceEEE------Eecc---c-ccEEEeecCCCc--EEEEECCCcceeeEecCCC
Confidence 876666655 45443 33211 2223342 2332 2 345444445564 44444445444444322 2
Q ss_pred ce--eEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 401 TD--IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 401 ~~--~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
.. ..-+.+||++++.... .+.|.+++++++.
T Consensus 191 ~~ct~G~f~pdGKr~~tgy~----dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 191 SPCTCGEFIPDGKRILTGYD----DGTIIVWNPKTGQ 223 (399)
T ss_pred CCcccccccCCCceEEEEec----CceEEEEecCCCc
Confidence 11 2345788988876665 3678888998886
No 217
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=92.67 E-value=0.13 Score=44.74 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=33.2
Q ss_pred EEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLS 539 (548)
Q Consensus 497 liv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG 539 (548)
+||++||+-.. ...|....+.|+++||.|+.+|+||.....
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~ 41 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDSD 41 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTSH
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCccc
Confidence 58999999654 334667788999999999999999987653
No 218
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=92.64 E-value=0.24 Score=49.68 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=36.4
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534 (548)
Q Consensus 464 i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG 534 (548)
-++... ||.+++...+-+ ++ -|.||++||+|...... ....+|..++|.|+.+|+||
T Consensus 7 ~~~~~~-~~~~l~y~~~g~--------~~--~~~lvllHG~~~~~~~~---~~~~~~~~~~~~vi~~D~~G 63 (306)
T TIGR01249 7 GYLNVS-DNHQLYYEQSGN--------PD--GKPVVFLHGGPGSGTDP---GCRRFFDPETYRIVLFDQRG 63 (306)
T ss_pred CeEEcC-CCcEEEEEECcC--------CC--CCEEEEECCCCCCCCCH---HHHhccCccCCEEEEECCCC
Confidence 345555 788877544321 01 24578999998764321 12234556899999999998
No 219
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=92.58 E-value=15 Score=38.24 Aligned_cols=243 Identities=14% Similarity=0.081 Sum_probs=128.6
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
.+.+++..++..+.....+..++... ......... ..........+++|.+++....+ .+.+.++|.
T Consensus 37 ~~~~~g~~~~v~~~~~~~~~~~~~~~--n~~~~~~~~---g~~~p~~i~v~~~~~~vyv~~~~--------~~~v~vid~ 103 (381)
T COG3391 37 AVNPDGTQVYVANSGSNDVSVIDATS--NTVTQSLSV---GGVYPAGVAVNPAGNKVYVTTGD--------SNTVSVIDT 103 (381)
T ss_pred EEcCccCEEEEEeecCceeeeccccc--ceeeeeccC---CCccccceeeCCCCCeEEEecCC--------CCeEEEEcC
Confidence 44556666666664444555554431 111211111 01223355688888876443222 257889997
Q ss_pred CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (548)
Q Consensus 229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w 308 (548)
++... ...+.-+. .-....++|||+.+. +..... ....+.++|-.. +++.. . +.-+ ........
T Consensus 104 ~~~~~--~~~~~vG~-~P~~~~~~~~~~~vY-V~n~~~----~~~~vsvid~~t-~~~~~-~-~~vG-----~~P~~~a~ 167 (381)
T COG3391 104 ATNTV--LGSIPVGL-GPVGLAVDPDGKYVY-VANAGN----GNNTVSVIDAAT-NKVTA-T-IPVG-----NTPTGVAV 167 (381)
T ss_pred cccce--eeEeeecc-CCceEEECCCCCEEE-EEeccc----CCceEEEEeCCC-CeEEE-E-EecC-----CCcceEEE
Confidence 66541 12222222 223457999999875 552210 246788888663 33211 1 2221 12356789
Q ss_pred CcCCcEEEEEeCCCCeeeEEEEeccCCeeEeeccc---ccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927 309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (548)
Q Consensus 309 spDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~---~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~ 385 (548)
+|+|+.+++.+. +...|..++..+..+.+ ... -.....|. ...+.+ ++.++|..-.......+..
T Consensus 168 ~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~------~i~v~~---~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 168 DPDGNKVYVTNS--DDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPA------GIAVDP---DGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred CCCCCeEEEEec--CCCeEEEEeCCCcceec-cccccccccCCCCc------eEEECC---CCCEEEEEeccCCCceEEE
Confidence 999995555553 33467788876655443 110 00111111 123333 7777776554433457889
Q ss_pred EECCCCceEeecCCCc--e-e-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 386 LDDFGHSLSLLDIPFT--D-I-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 386 ~dl~~g~~~~l~~~~~--~-~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
+|..++.+.....+.. . . -.++++++.+++.... ...++.+|..+..
T Consensus 236 id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~~ 286 (381)
T COG3391 236 IDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ---GGTVSVIDGATDR 286 (381)
T ss_pred EeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC---CCeEEEEeCCCCc
Confidence 9998887766532211 1 1 1226778777666543 5678888876654
No 220
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=92.55 E-value=12 Score=37.23 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=28.0
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCceEeecCCCceeEeeeecCCEEEEEEec
Q 008927 368 KNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGAS 419 (548)
Q Consensus 368 ~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~~~~~s~d~~~l~~~~ss 419 (548)
+++|++. +.+..+++.+|+++|+.+.+..-.+...++.-.|+. +|++-+
T Consensus 212 dgrLwvl--dsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~l-lvVgmS 260 (335)
T TIGR03032 212 QGKLWLL--NSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDF-AFVGLS 260 (335)
T ss_pred CCeEEEE--ECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCE-EEEEec
Confidence 3456554 356778999999889888775311223344333444 444433
No 221
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=92.53 E-value=6 Score=38.15 Aligned_cols=121 Identities=12% Similarity=0.031 Sum_probs=69.9
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE--eee--cCCceeeeEECCCCCEEEEEEecCCCC
Q 008927 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV--LVS--GSDFYAFPRMDPRGERMAWIEWHHPNM 268 (548)
Q Consensus 193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~--L~~--~~~~~~~p~~SPDGk~La~~~~~~~~~ 268 (548)
.....+|+|+++.+.|. +. ++--+|.||-++.. ... +.. ..+|+ -.||......|....
T Consensus 161 ~ns~~~snd~~~~~~Vg-ds------~~Vf~y~id~~sey---~~~~~~a~t~D~gF~--~S~s~~~~~FAv~~Q----- 223 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVG-DS------RRVFRYAIDDESEY---IENIYEAPTSDHGFY--NSFSENDLQFAVVFQ----- 223 (344)
T ss_pred eeeeEEcCCCceEEEec-CC------CcceEEEeCCccce---eeeeEecccCCCcee--eeeccCcceEEEEec-----
Confidence 44567999999998883 32 12345666665554 222 222 23343 368887777775542
Q ss_pred CCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc--EEEEEeCCCCeeeEEEEeccCCeeE
Q 008927 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVL 338 (548)
Q Consensus 269 p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~--L~~~sd~~~g~~~Ly~~d~~~g~~~ 338 (548)
...+.+.|+...+.+ .+..+...+...+++....|++-|- |+|+++. +..+.++|..+++-.
T Consensus 224 ---dg~~~I~DVR~~~tp--m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh---fs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 224 ---DGTCAIYDVRNMATP--MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH---FSRVHVVDTRNYVNH 287 (344)
T ss_pred ---CCcEEEEEecccccc--hhhhcccCCCCCCceEEEEecCCCcceEEEEecC---cceEEEEEcccCcee
Confidence 345777888755431 1111111101115667778998775 8888864 446777787676543
No 222
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=92.49 E-value=0.32 Score=47.72 Aligned_cols=63 Identities=19% Similarity=0.290 Sum_probs=46.8
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 465 ~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
-++.. +|..++--...|.+. .+..-+|+++||.- ......|...+-.|+..||+|+..|++|-
T Consensus 31 ~~~n~-rG~~lft~~W~p~~~------~~pr~lv~~~HG~g-~~~s~~~~~~a~~l~~~g~~v~a~D~~Gh 93 (313)
T KOG1455|consen 31 FFTNP-RGAKLFTQSWLPLSG------TEPRGLVFLCHGYG-EHSSWRYQSTAKRLAKSGFAVYAIDYEGH 93 (313)
T ss_pred eEEcC-CCCEeEEEecccCCC------CCCceEEEEEcCCc-ccchhhHHHHHHHHHhCCCeEEEeeccCC
Confidence 35565 899999999999641 25668999999962 22223455566679999999999999984
No 223
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=92.46 E-value=0.11 Score=53.87 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=25.9
Q ss_pred CCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 536 (548)
Q Consensus 493 ~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt 536 (548)
.++|+||+-||==..+ ..|+....-|||+||+|+.++.|-.+
T Consensus 98 ~~~PvvIFSHGlgg~R--~~yS~~~~eLAS~GyVV~aieHrDgS 139 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSR--TSYSAICGELASHGYVVAAIEHRDGS 139 (379)
T ss_dssp S-EEEEEEE--TT--T--TTTHHHHHHHHHTT-EEEEE---SS-
T ss_pred CCCCEEEEeCCCCcch--hhHHHHHHHHHhCCeEEEEeccCCCc
Confidence 5799999999964333 34667778899999999999999543
No 224
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.34 E-value=12 Score=36.75 Aligned_cols=165 Identities=10% Similarity=0.036 Sum_probs=82.8
Q ss_pred CeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (548)
Q Consensus 147 g~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i 226 (548)
+-.|.|+.+.|+-+-++..+|.-++..| .-.+.++-.. -.......|.-+|+. +.+.|+ ...|+.+
T Consensus 90 ~LTynp~~rtLFav~n~p~~iVElt~~G--dlirtiPL~g---~~DpE~Ieyig~n~f-vi~dER--------~~~l~~~ 155 (316)
T COG3204 90 SLTYNPDTRTLFAVTNKPAAIVELTKEG--DLIRTIPLTG---FSDPETIEYIGGNQF-VIVDER--------DRALYLF 155 (316)
T ss_pred ceeeCCCcceEEEecCCCceEEEEecCC--ceEEEecccc---cCChhHeEEecCCEE-EEEehh--------cceEEEE
Confidence 3478888888877776777888888886 3344443220 001122346656554 343333 2455555
Q ss_pred ECCCCC--ccC-cEEee--e--c-CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCC-C
Q 008927 227 ALNGQN--IQE-PKVLV--S--G-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD-P 297 (548)
Q Consensus 227 dl~~g~--~~~-~~~L~--~--~-~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~-~ 297 (548)
.++.+. ... ...+. . . +.-+...+|+|+.++|.+..-..| ..||.+....+. +.......... .
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P------~~I~~~~~~~~~-l~~~~~~~~~~~~ 228 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP------IGIFEVTQSPSS-LSVHASLDPTADR 228 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC------cEEEEEecCCcc-cccccccCccccc
Confidence 444331 000 00111 1 1 222466799999999876653332 457777644211 10000000000 0
Q ss_pred C-cccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCC
Q 008927 298 T-IVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (548)
Q Consensus 298 ~-~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g 335 (548)
+ ....++.+.+.+... |+++++. + ..|..+|+++.
T Consensus 229 ~~f~~DvSgl~~~~~~~~LLVLS~E-S--r~l~Evd~~G~ 265 (316)
T COG3204 229 DLFVLDVSGLEFNAITNSLLVLSDE-S--RRLLEVDLSGE 265 (316)
T ss_pred ceEeeccccceecCCCCcEEEEecC-C--ceEEEEecCCC
Confidence 0 012356677776544 8888876 3 25666776443
No 225
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=92.29 E-value=2.2 Score=43.23 Aligned_cols=107 Identities=16% Similarity=0.086 Sum_probs=70.4
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceec-ceeeCCCCCEEEEEEecc----CC-----CCCC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYA-DGIFDPRFNRYVTVREDR----RQ-----DALN 218 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~-~~~~SpDG~~i~~v~~~~----~~-----~~~~ 218 (548)
+|...++.++.. |.---||.++.++ +.++.++...++.+.++. ++..+++| .|+|..... ++ -.++
T Consensus 121 ~f~~~ggdL~Va-DAYlGL~~V~p~g--~~a~~l~~~~~G~~~kf~N~ldI~~~g-~vyFTDSSsk~~~rd~~~a~l~g~ 196 (376)
T KOG1520|consen 121 RFDKKGGDLYVA-DAYLGLLKVGPEG--GLAELLADEAEGKPFKFLNDLDIDPEG-VVYFTDSSSKYDRRDFVFAALEGD 196 (376)
T ss_pred EeccCCCeEEEE-ecceeeEEECCCC--CcceeccccccCeeeeecCceeEcCCC-eEEEeccccccchhheEEeeecCC
Confidence 555556555443 2334689999988 778888775433344544 57788854 466652211 10 0123
Q ss_pred ceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEE
Q 008927 219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE 262 (548)
Q Consensus 219 ~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~ 262 (548)
...+|+++|..+.. .++|.++-.|....++|||+..+.+..
T Consensus 197 ~~GRl~~YD~~tK~---~~VLld~L~F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 197 PTGRLFRYDPSTKV---TKVLLDGLYFPNGLALSPDGSFVLVAE 237 (376)
T ss_pred CccceEEecCcccc---hhhhhhcccccccccCCCCCCEEEEEe
Confidence 45679999999988 788887766767778999999988776
No 226
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=92.26 E-value=0.23 Score=50.57 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=43.4
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEcc-Ccccccc--------------------Cc--c-ChHHHHHH
Q 008927 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG-GPTSEAR--------------------GI--L-NLSIQYWT 521 (548)
Q Consensus 466 ~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHG-GP~~~~~--------------------~~--~-~~~~Q~~a 521 (548)
|++. ||..|+.+.+.|.+ +..+||.+|| |=|+.+. .. | ...++.|+
T Consensus 2 ~~~~-~g~~l~~~~~~~~~---------~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~ 71 (332)
T TIGR01607 2 FRNK-DGLLLKTYSWIVKN---------AIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFN 71 (332)
T ss_pred ccCC-CCCeEEEeeeeccC---------CeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHH
Confidence 5666 99999999998842 2379999999 3333211 11 2 24578999
Q ss_pred hcCcEEEEeCCCC
Q 008927 522 SRGWAFVDVNYGG 534 (548)
Q Consensus 522 srGyaVl~~NyRG 534 (548)
++||.|+.+|.||
T Consensus 72 ~~G~~V~~~D~rG 84 (332)
T TIGR01607 72 KNGYSVYGLDLQG 84 (332)
T ss_pred HCCCcEEEecccc
Confidence 9999999999998
No 227
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=92.02 E-value=1.1 Score=46.42 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=88.3
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCcc
Q 008927 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (548)
Q Consensus 155 ~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~ 234 (548)
..|.|..-.++.|-+.|+... .-.+++.... -...-+.+|+||..|..- . ..+.+-.+|+..+.
T Consensus 521 akvcFsccsdGnI~vwDLhnq-~~VrqfqGht----DGascIdis~dGtklWTG--G-------lDntvRcWDlregr-- 584 (705)
T KOG0639|consen 521 AKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHT----DGASCIDISKDGTKLWTG--G-------LDNTVRCWDLREGR-- 584 (705)
T ss_pred cceeeeeccCCcEEEEEcccc-eeeecccCCC----CCceeEEecCCCceeecC--C-------Cccceeehhhhhhh--
Confidence 369999888998888888641 3345554331 123345688999887542 1 23567788998874
Q ss_pred CcEEeeec--CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927 235 EPKVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (548)
Q Consensus 235 ~~~~L~~~--~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG 312 (548)
++.+. ...+.....+|.|.+|| +.. .++++++...... ++..+.-.+ ..+..+.|++-|
T Consensus 585 ---qlqqhdF~SQIfSLg~cP~~dWla-vGM-------ens~vevlh~skp----~kyqlhlhe----ScVLSlKFa~cG 645 (705)
T KOG0639|consen 585 ---QLQQHDFSSQIFSLGYCPTGDWLA-VGM-------ENSNVEVLHTSKP----EKYQLHLHE----SCVLSLKFAYCG 645 (705)
T ss_pred ---hhhhhhhhhhheecccCCCcccee-eec-------ccCcEEEEecCCc----cceeecccc----cEEEEEEecccC
Confidence 23221 11234556799999998 442 3567888887632 234444433 467889999999
Q ss_pred cEEEEEeCCCCeeeEEEEe
Q 008927 313 ELFFVTDRKNGFWNLHKWI 331 (548)
Q Consensus 313 ~L~~~sd~~~g~~~Ly~~d 331 (548)
+.++.+-. ++..+.|+..
T Consensus 646 kwfvStGk-DnlLnawrtP 663 (705)
T KOG0639|consen 646 KWFVSTGK-DNLLNAWRTP 663 (705)
T ss_pred ceeeecCc-hhhhhhccCc
Confidence 86555544 5666666654
No 228
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=91.93 E-value=0.27 Score=47.81 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=28.6
Q ss_pred CcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 495 ~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
.|.||++||||.+... .|.....++...||.|+.+|.||.
T Consensus 25 ~~~vl~~hG~~g~~~~-~~~~~~~~l~~~g~~vi~~d~~G~ 64 (288)
T TIGR01250 25 KIKLLLLHGGPGMSHE-YLENLRELLKEEGREVIMYDQLGC 64 (288)
T ss_pred CCeEEEEcCCCCccHH-HHHHHHHHHHhcCCEEEEEcCCCC
Confidence 3778889999876532 233444555666999999999984
No 229
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=91.84 E-value=7.8 Score=38.37 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=61.1
Q ss_pred ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC-CCCCccC-cEEeeec----CCceeeeEECC-CCCEEEEEEecCCC
Q 008927 195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL-NGQNIQE-PKVLVSG----SDFYAFPRMDP-RGERMAWIEWHHPN 267 (548)
Q Consensus 195 ~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl-~~g~~~~-~~~L~~~----~~~~~~p~~SP-DGk~La~~~~~~~~ 267 (548)
.+.|||||..|++- . .+.|-+.|+ ..|..-+ ...++.+ .+..+..++|| |.+.+|+-++.
T Consensus 163 sL~Fs~DGeqlfaG--y--------krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~--- 229 (406)
T KOG2919|consen 163 SLQFSPDGEQLFAG--Y--------KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG--- 229 (406)
T ss_pred eEEecCCCCeEeec--c--------cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeeccc---
Confidence 57899999998763 2 245667776 3443100 1222221 23456678888 55577765532
Q ss_pred CCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEec
Q 008927 268 MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE 332 (548)
Q Consensus 268 ~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~ 332 (548)
..+-++.-+ ++. ...++.+.. ..+..+.|.+||.-+|...|.. ..|..+|+
T Consensus 230 -----q~~giy~~~-~~~--pl~llggh~----gGvThL~~~edGn~lfsGaRk~--dkIl~WDi 280 (406)
T KOG2919|consen 230 -----QRVGIYNDD-GRR--PLQLLGGHG----GGVTHLQWCEDGNKLFSGARKD--DKILCWDI 280 (406)
T ss_pred -----ceeeeEecC-CCC--ceeeecccC----CCeeeEEeccCcCeecccccCC--CeEEEEee
Confidence 223333333 222 233444433 6799999999999555543323 24556665
No 230
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.78 E-value=4.3 Score=44.22 Aligned_cols=190 Identities=11% Similarity=0.063 Sum_probs=96.9
Q ss_pred ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeec----CCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927 195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG----SDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (548)
Q Consensus 195 ~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~----~~~~~~p~~SPDGk~La~~~~~~~~~p~ 270 (548)
...||++|+.|++.+. +.|-.+|+.++. .. +..+ .+......++||+++|+....
T Consensus 24 ~~~~s~nG~~L~t~~~----------d~Vi~idv~t~~---~~-l~s~~~ed~d~ita~~l~~d~~~L~~a~r------- 82 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTACG----------DRVIIIDVATGS---IA-LPSGSNEDEDEITALALTPDEEVLVTASR------- 82 (775)
T ss_pred ceeECCCCCEEEEecC----------ceEEEEEccCCc---ee-cccCCccchhhhheeeecCCccEEEEeec-------
Confidence 3689999999888653 358889999987 32 3322 233567789999998875542
Q ss_pred CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCC
Q 008927 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP 350 (548)
Q Consensus 271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p 350 (548)
..-|.+..++. |++...-...+. ..+.-..++|-|.|+...+. .+. +-++|.+.+...--.. ..+++
T Consensus 83 -s~llrv~~L~t-gk~irswKa~He-----~Pvi~ma~~~~g~LlAtgga-D~~--v~VWdi~~~~~th~fk---G~gGv 149 (775)
T KOG0319|consen 83 -SQLLRVWSLPT-GKLIRSWKAIHE-----APVITMAFDPTGTLLATGGA-DGR--VKVWDIKNGYCTHSFK---GHGGV 149 (775)
T ss_pred -cceEEEEEccc-chHhHhHhhccC-----CCeEEEEEcCCCceEEeccc-cce--EEEEEeeCCEEEEEec---CCCce
Confidence 34567777774 542111111111 23445677888755444333 443 3344554443221111 22223
Q ss_pred cccccCcceeeeeecCCC-CEEEEEEEeCCeEEEEEEECCCCce--EeecCCCceeEee--eecCCEEEEEEecCCCCCe
Q 008927 351 LWVFGINSYEIIQSHGEK-NLIACSYRQNGRSYLGILDDFGHSL--SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSS 425 (548)
Q Consensus 351 ~w~~~~~~~~~~~~~~d~-~~l~~~~~~~g~~~L~~~dl~~g~~--~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~ 425 (548)
.|. ..|.| +- .++++....++ .++++|+.++.. ..+....+.+.++ ..|+..++.++. -.-
T Consensus 150 Vss-----l~F~~---~~~~~lL~sg~~D~--~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkv 215 (775)
T KOG0319|consen 150 VSS-----LLFHP---HWNRWLLASGATDG--TVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKV 215 (775)
T ss_pred EEE-----EEeCC---ccchhheeecCCCc--eEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcE
Confidence 322 12221 21 23444443444 455566655443 1222334455554 456555544432 234
Q ss_pred EEEEEcC
Q 008927 426 VAKVTLD 432 (548)
Q Consensus 426 l~~~d~~ 432 (548)
++++|+.
T Consensus 216 i~vwd~~ 222 (775)
T KOG0319|consen 216 IIVWDLV 222 (775)
T ss_pred EEEeehh
Confidence 5566653
No 231
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=91.66 E-value=2 Score=45.00 Aligned_cols=52 Identities=6% Similarity=0.046 Sum_probs=34.6
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEE
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVT 207 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~ 207 (548)
+|.|+...|+|.+ .++++.-++..+ ..+.+--.. ..-+-...|+|..+.|+-
T Consensus 152 ~W~p~S~~vl~c~--g~h~~IKpL~~n-~k~i~WkAH----DGiiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQ--GGHISIKPLAAN-SKIIRWRAH----DGLVLSLSWSTQSNIIAS 203 (737)
T ss_pred EECCCCCceEEec--CCeEEEeecccc-cceeEEecc----CcEEEEeecCccccceee
Confidence 6888889999998 778999988742 333333332 123445678888776654
No 232
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=91.64 E-value=3.4 Score=40.55 Aligned_cols=163 Identities=12% Similarity=-0.005 Sum_probs=88.3
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCC
Q 008927 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (548)
Q Consensus 193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~ 272 (548)
+..+.||.|+..|+-.+-++ .+-+-.+.+|+. .+.......++....+++||.+|.-.+.+
T Consensus 309 vt~l~FSrD~SqiLS~sfD~---------tvRiHGlKSGK~--LKEfrGHsSyvn~a~ft~dG~~iisaSsD-------- 369 (508)
T KOG0275|consen 309 VTCLSFSRDNSQILSASFDQ---------TVRIHGLKSGKC--LKEFRGHSSYVNEATFTDDGHHIISASSD-------- 369 (508)
T ss_pred eeEEEEccCcchhhcccccc---------eEEEeccccchh--HHHhcCccccccceEEcCCCCeEEEecCC--------
Confidence 45567899998876643332 233445666651 22222233456677899999998743321
Q ss_pred ceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCc
Q 008927 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPL 351 (548)
Q Consensus 273 ~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~ 351 (548)
..+-+.+..++.-+...+. .+. + ..+.....-|..- -+++.++ ++ .+|.++..+.-++.......+-+ .
T Consensus 370 gtvkvW~~KtteC~~Tfk~-~~~--d--~~vnsv~~~PKnpeh~iVCNr-sn--tv~imn~qGQvVrsfsSGkREgG--d 439 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKP-LGT--D--YPVNSVILLPKNPEHFIVCNR-SN--TVYIMNMQGQVVRSFSSGKREGG--D 439 (508)
T ss_pred ccEEEecCcchhhhhhccC-CCC--c--ccceeEEEcCCCCceEEEEcC-CC--eEEEEeccceEEeeeccCCccCC--c
Confidence 2344444442111111111 111 2 4556666667665 6677777 43 58888885544555554433222 1
Q ss_pred ccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceE
Q 008927 352 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (548)
Q Consensus 352 w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~ 394 (548)
++. -..+| .|++||+..+ ...||.+...+|+++
T Consensus 440 Fi~----~~lSp---kGewiYcigE---D~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 440 FIN----AILSP---KGEWIYCIGE---DGVLYCFSVLSGKLE 472 (508)
T ss_pred eEE----EEecC---CCcEEEEEcc---CcEEEEEEeecCcee
Confidence 111 12333 7888887653 346788887788765
No 233
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=91.61 E-value=5.4 Score=41.38 Aligned_cols=151 Identities=8% Similarity=0.005 Sum_probs=87.6
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
.|.|....|+-+..-|+.|++.++-. .-+.|+...+ ...-+.+..|+++|..++..+-| ..|-.+|+
T Consensus 221 ~~fp~~~hLlLS~gmD~~vklW~vy~---~~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS~sfD---------~~lKlwDt 287 (503)
T KOG0282|consen 221 QWFPKKGHLLLSGGMDGLVKLWNVYD---DRRCLRTFKG-HRKPVRDASFNNCGTSFLSASFD---------RFLKLWDT 287 (503)
T ss_pred hhccceeeEEEecCCCceEEEEEEec---Ccceehhhhc-chhhhhhhhccccCCeeeeeecc---------eeeeeecc
Confidence 35665567777766677777766643 2233433211 11235577899999997766443 36778899
Q ss_pred CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (548)
Q Consensus 229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w 308 (548)
++|+. ...+..+ ....-..+.||+..++++... ..+|...|+.. |++.. .....- .++....|
T Consensus 288 ETG~~--~~~f~~~-~~~~cvkf~pd~~n~fl~G~s-------d~ki~~wDiRs-~kvvq--eYd~hL----g~i~~i~F 350 (503)
T KOG0282|consen 288 ETGQV--LSRFHLD-KVPTCVKFHPDNQNIFLVGGS-------DKKIRQWDIRS-GKVVQ--EYDRHL----GAILDITF 350 (503)
T ss_pred ccceE--EEEEecC-CCceeeecCCCCCcEEEEecC-------CCcEEEEeccc-hHHHH--HHHhhh----hheeeeEE
Confidence 99972 2223322 223344688999777665422 45788888874 54211 111111 45667889
Q ss_pred CcCCc-EEEEEeCCCCeeeEEEEe
Q 008927 309 SSKGE-LFFVTDRKNGFWNLHKWI 331 (548)
Q Consensus 309 spDG~-L~~~sd~~~g~~~Ly~~d 331 (548)
-++|+ ++-.+|. +...||-+.
T Consensus 351 ~~~g~rFissSDd--ks~riWe~~ 372 (503)
T KOG0282|consen 351 VDEGRRFISSSDD--KSVRIWENR 372 (503)
T ss_pred ccCCceEeeeccC--ccEEEEEcC
Confidence 99998 5545554 444555443
No 234
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.60 E-value=5.6 Score=40.46 Aligned_cols=160 Identities=12% Similarity=-0.006 Sum_probs=93.4
Q ss_pred CCCCcCCHHHHhcCCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEE
Q 008927 74 SWKSPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI 152 (548)
Q Consensus 74 ~w~spit~~~l~~~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~ 152 (548)
.|++-.++-...+....+.++.+|| |+.++++.. ....+|....+ .....+||.+.+.+ |..-+|..
T Consensus 172 ~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~-----d~~~VW~~~~g--~~~a~~t~~~k~~~-----~~~cRF~~ 239 (398)
T KOG0771|consen 172 EWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA-----DSARVWSVNTG--AALARKTPFSKDEM-----FSSCRFSV 239 (398)
T ss_pred ecCcchhhhhhHhhcCccccceeCCCCcEEEEecC-----CceEEEEeccC--chhhhcCCcccchh-----hhhceecc
Confidence 5889888888877778999999999 999999862 13456766443 34566666432221 22224555
Q ss_pred EC---CEEEEEeCC-CC--eEEEEeCCCCCC---CceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 008927 153 FG---DTVIFSNYK-DQ--RLYKHSIDSKDS---SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (548)
Q Consensus 153 ~~---~~i~F~~~~-~~--~Ly~~~~~~~~~---~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l 223 (548)
|+ ...+|.... .+ .+|.+.+..+ + ..++.+.. ...+..+..|+||+.++.-..+ +++
T Consensus 240 d~~~~~l~laa~~~~~~~v~~~~~~~w~~-~~~l~~~~~~~~----~~siSsl~VS~dGkf~AlGT~d---------GsV 305 (398)
T KOG0771|consen 240 DNAQETLRLAASQFPGGGVRLCDISLWSG-SNFLRLRKKIKR----FKSISSLAVSDDGKFLALGTMD---------GSV 305 (398)
T ss_pred cCCCceEEEEEecCCCCceeEEEeeeecc-ccccchhhhhhc----cCcceeEEEcCCCcEEEEeccC---------CcE
Confidence 54 223333322 22 3344433321 1 22222222 1246778899999987664221 357
Q ss_pred EEEECCCCCccCcEEeeec--CCceeeeEECCCCCEEEEEE
Q 008927 224 VAIALNGQNIQEPKVLVSG--SDFYAFPRMDPRGERMAWIE 262 (548)
Q Consensus 224 ~~idl~~g~~~~~~~L~~~--~~~~~~p~~SPDGk~La~~~ 262 (548)
-+++..+=+ .-++... ..++....||||.++++=++
T Consensus 306 ai~~~~~lq---~~~~vk~aH~~~VT~ltF~Pdsr~~~svS 343 (398)
T KOG0771|consen 306 AIYDAKSLQ---RLQYVKEAHLGFVTGLTFSPDSRYLASVS 343 (398)
T ss_pred EEEEeceee---eeEeehhhheeeeeeEEEcCCcCcccccc
Confidence 777766544 2233221 23578889999999887554
No 235
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=91.57 E-value=0.66 Score=43.18 Aligned_cols=62 Identities=23% Similarity=0.209 Sum_probs=46.6
Q ss_pred CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh--HHHHHHhcCcEEEEeCCCC
Q 008927 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL--SIQYWTSRGWAFVDVNYGG 534 (548)
Q Consensus 460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~--~~Q~~asrGyaVl~~NyRG 534 (548)
+-|.++..++ |..++++|++.- ....|++++.|+--.. .+... -.-++.+.+..|+.+.|||
T Consensus 53 pye~i~l~T~-D~vtL~a~~~~~---------E~S~pTlLyfh~NAGN---mGhr~~i~~~fy~~l~mnv~ivsYRG 116 (300)
T KOG4391|consen 53 PYERIELRTR-DKVTLDAYLMLS---------ESSRPTLLYFHANAGN---MGHRLPIARVFYVNLKMNVLIVSYRG 116 (300)
T ss_pred CceEEEEEcC-cceeEeeeeecc---------cCCCceEEEEccCCCc---ccchhhHHHHHHHHcCceEEEEEeec
Confidence 3477889998 999999999982 1256999999986322 12222 2246889999999999997
No 236
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=91.52 E-value=14 Score=36.69 Aligned_cols=97 Identities=12% Similarity=-0.112 Sum_probs=51.5
Q ss_pred EEEEEECCCCCccCcEEeeecCC---c---eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeee-EEEcC
Q 008927 222 EIVAIALNGQNIQEPKVLVSGSD---F---YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR-VCVAG 294 (548)
Q Consensus 222 ~l~~idl~~g~~~~~~~L~~~~~---~---~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~-~~l~~ 294 (548)
-|.++|.-+|+ .+.-...-+ - .-...|||||.+|. .. .+.-|.+++....|..-+. ..++.
T Consensus 134 PIh~wdaftG~---lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aG--------ykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 134 PIHLWDAFTGK---LRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AG--------YKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred ceeeeeccccc---cccchhhhhhHHhhhhheeEEecCCCCeEe-ec--------ccceEEEeeccCCCCCCcchhhhhc
Confidence 47788888887 444332211 1 13568999999985 43 1456888888655641111 12222
Q ss_pred CCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEe
Q 008927 295 FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI 331 (548)
Q Consensus 295 ~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d 331 (548)
+..+....+..++++|-.. .+.+..- .....||..+
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY-~q~~giy~~~ 238 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSY-GQRVGIYNDD 238 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecc-cceeeeEecC
Confidence 1101113456678888654 5544333 2234465543
No 237
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=91.50 E-value=14 Score=35.70 Aligned_cols=139 Identities=11% Similarity=0.021 Sum_probs=75.9
Q ss_pred eEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCc---eee-eEEEcCCC
Q 008927 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD---VYK-RVCVAGFD 296 (548)
Q Consensus 221 ~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~---~~~-~~~l~~~~ 296 (548)
+.+-++|+++|+ ......-+..+....||++|..+++...+ .|. ....|.+.++..+.. -.+ ...+...+
T Consensus 74 ~t~kLWDv~tGk---~la~~k~~~~Vk~~~F~~~gn~~l~~tD~--~mg-~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 74 QTAKLWDVETGK---QLATWKTNSPVKRVDFSFGGNLILASTDK--QMG-YTCFVSVFDIRDDSSDIDSEEPYLKIPTPD 147 (327)
T ss_pred ceeEEEEcCCCc---EEEEeecCCeeEEEeeccCCcEEEEEehh--hcC-cceEEEEEEccCChhhhcccCceEEecCCc
Confidence 456777999997 33333333335556789999988877622 232 235688888763221 011 23333322
Q ss_pred CCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCee-EeecccccccCCCcccccCcceeeeeecCCCCEEEEEE
Q 008927 297 PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY 375 (548)
Q Consensus 297 ~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~-~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~ 375 (548)
..+....|+|-|+.++.... .| .|-.+|+.+|+. ..... +.. ...+...++ .++..+.+.
T Consensus 148 ----skit~a~Wg~l~~~ii~Ghe-~G--~is~~da~~g~~~v~s~~---~h~-----~~Ind~q~s----~d~T~FiT~ 208 (327)
T KOG0643|consen 148 ----SKITSALWGPLGETIIAGHE-DG--SISIYDARTGKELVDSDE---EHS-----SKINDLQFS----RDRTYFITG 208 (327)
T ss_pred ----cceeeeeecccCCEEEEecC-CC--cEEEEEcccCceeeechh---hhc-----ccccccccc----CCcceEEec
Confidence 34677899999994444443 44 466677777642 21111 111 122334454 345566666
Q ss_pred EeCCeEEEE
Q 008927 376 RQNGRSYLG 384 (548)
Q Consensus 376 ~~~g~~~L~ 384 (548)
..+....|+
T Consensus 209 s~Dttakl~ 217 (327)
T KOG0643|consen 209 SKDTTAKLV 217 (327)
T ss_pred ccCccceee
Confidence 666666554
No 238
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=91.44 E-value=0.24 Score=48.88 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=33.3
Q ss_pred CCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 536 (548)
Q Consensus 493 ~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt 536 (548)
+..|.||++||..+.. ..|....+.|.++||.|+.+++||..
T Consensus 16 ~~~p~vvliHG~~~~~--~~w~~~~~~L~~~g~~vi~~dl~g~G 57 (273)
T PLN02211 16 RQPPHFVLIHGISGGS--WCWYKIRCLMENSGYKVTCIDLKSAG 57 (273)
T ss_pred CCCCeEEEECCCCCCc--CcHHHHHHHHHhCCCEEEEecccCCC
Confidence 3458999999976544 35666778899999999999999753
No 239
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=91.38 E-value=0.21 Score=47.45 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=31.9
Q ss_pred EEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHH-hcCcEEEEeCC
Q 008927 477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT-SRGWAFVDVNY 532 (548)
Q Consensus 477 g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~a-srGyaVl~~Ny 532 (548)
-.||.|.+ . +..++||||..||.-.......-...+..+| .+||+|++|+-
T Consensus 3 Y~lYvP~~--~---~~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~ 54 (220)
T PF10503_consen 3 YRLYVPPG--A---PRGPVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQ 54 (220)
T ss_pred EEEecCCC--C---CCCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccc
Confidence 35788854 2 1347899999999855432111112234466 46999999984
No 240
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=91.38 E-value=1 Score=49.44 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=43.0
Q ss_pred ceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEE
Q 008927 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE 262 (548)
Q Consensus 191 ~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~ 262 (548)
-++.++.|||||+||+..+-| ..|.++|+.++. ..-...-+.-..+..+||+|..||-+.
T Consensus 577 nritd~~FS~DgrWlisasmD---------~tIr~wDlpt~~---lID~~~vd~~~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 577 NRITDMTFSPDGRWLISASMD---------STIRTWDLPTGT---LIDGLLVDSPCTSLSFSPNGDFLATVH 636 (910)
T ss_pred cceeeeEeCCCCcEEEEeecC---------CcEEEEeccCcc---eeeeEecCCcceeeEECCCCCEEEEEE
Confidence 478899999999999876443 468899999986 222111122345668999999999554
No 241
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=91.11 E-value=15 Score=35.21 Aligned_cols=133 Identities=11% Similarity=0.071 Sum_probs=76.0
Q ss_pred EEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc
Q 008927 222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (548)
Q Consensus 222 ~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~ 301 (548)
.+-++|..+|.. .+.|. .+..+....+|+||+.|. ++. ++.+-..|.+.-+.++ ..++. .
T Consensus 166 tVRLWD~rTgt~--v~sL~-~~s~VtSlEvs~dG~ilT-ia~--------gssV~Fwdaksf~~lK------s~k~P--~ 225 (334)
T KOG0278|consen 166 TVRLWDHRTGTE--VQSLE-FNSPVTSLEVSQDGRILT-IAY--------GSSVKFWDAKSFGLLK------SYKMP--C 225 (334)
T ss_pred ceEEEEeccCcE--EEEEe-cCCCCcceeeccCCCEEE-Eec--------CceeEEecccccccee------eccCc--c
Confidence 466779999872 33343 333456678999999775 441 3456566655433221 11101 3
Q ss_pred CCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeE
Q 008927 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 381 (548)
Q Consensus 302 ~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~ 381 (548)
.+.....+|+-.+++.-.. -..+|++|-.+|+..... ....++ |.. ...|+| ++.+|.+-.++|.-
T Consensus 226 nV~SASL~P~k~~fVaGge---d~~~~kfDy~TgeEi~~~-nkgh~g-pVh-----cVrFSP----dGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGE---DFKVYKFDYNTGEEIGSY-NKGHFG-PVH-----CVRFSP----DGELYASGSEDGTI 291 (334)
T ss_pred ccccccccCCCceEEecCc---ceEEEEEeccCCceeeec-ccCCCC-ceE-----EEEECC----CCceeeccCCCceE
Confidence 4566677888655444322 245888898888765553 111222 221 234553 56677777788888
Q ss_pred EEEEEEC
Q 008927 382 YLGILDD 388 (548)
Q Consensus 382 ~L~~~dl 388 (548)
+||...+
T Consensus 292 rlWQt~~ 298 (334)
T KOG0278|consen 292 RLWQTTP 298 (334)
T ss_pred EEEEecC
Confidence 8887654
No 242
>PRK13615 lipoprotein LpqB; Provisional
Probab=91.04 E-value=24 Score=38.51 Aligned_cols=163 Identities=9% Similarity=-0.043 Sum_probs=86.9
Q ss_pred cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCc
Q 008927 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (548)
Q Consensus 194 ~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~ 273 (548)
..+..|+||+.++++..+ ..|++-... +. .+.+..+. ....|.|+++| + +|+..+. .
T Consensus 337 ~s~avS~dg~~~A~v~~~---------~~l~vg~~~-~~---~~~~~~~~-~Lt~PS~d~~g-~-vWtv~~g-------~ 393 (557)
T PRK13615 337 DAATLSADGRQAAVRNAS---------GVWSVGDGD-RD---AVLLDTRP-GLVAPSLDAQG-Y-VWSTPAS-------D 393 (557)
T ss_pred ccceEcCCCceEEEEcCC---------ceEEEecCC-Cc---ceeeccCC-ccccCcCcCCC-C-EEEEeCC-------C
Confidence 467899999999998221 245544433 34 45555443 46789999999 3 4665321 1
Q ss_pred eEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEE--EeccCCeeEee-cccccccCC
Q 008927 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK--WIESNNEVLAI-YSLDAEFSR 349 (548)
Q Consensus 274 ~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~--~d~~~g~~~~l-~~~~~d~~~ 349 (548)
...+.....+|+.... .+.... + ..+..++-|+||- ++++.+. .|..+|++ +-..++..+.| +.. ....
T Consensus 394 ~~~l~~~~~~G~~~~v-~v~~~~-~--~~I~~lrvSrDG~R~Avi~~~-~g~~~V~va~V~R~~~~P~~L~~~p-~~l~- 466 (557)
T PRK13615 394 PRGLVAWGPDGVGHPV-AVSWTA-T--GRVVSLEVARDGARVLVQLET-GAGPQLLVASIVRDGGVPTSLTTTP-LELL- 466 (557)
T ss_pred ceEEEEecCCCceEEe-eccccC-C--CeeEEEEeCCCccEEEEEEec-CCCCEEEEEEEEeCCCcceEeeecc-EEcc-
Confidence 2233333334542211 111111 2 4588899999998 8888765 44445554 32234434455 311 0000
Q ss_pred CcccccCcceeeeeecCCCCEEEEEEE-eCCeEEEEEEECCCC
Q 008927 350 PLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGH 391 (548)
Q Consensus 350 p~w~~~~~~~~~~~~~~d~~~l~~~~~-~~g~~~L~~~dl~~g 391 (548)
+.- -......|. ++..|+.... .++..+++++.+.+.
T Consensus 467 ~~l-~~v~sl~W~----~~~~laVl~~~~~~~~~v~~v~v~g~ 504 (557)
T PRK13615 467 ASP-GTPLDATWV----DELDVATLTLAPDGERQVELHQVGGP 504 (557)
T ss_pred cCc-CcceeeEEc----CCCEEEEEeccCCCCceEEEEECCCc
Confidence 000 012234566 5667766653 345567788887643
No 243
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=90.97 E-value=4.3 Score=42.73 Aligned_cols=95 Identities=13% Similarity=0.177 Sum_probs=56.3
Q ss_pred eCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee
Q 008927 161 NYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240 (548)
Q Consensus 161 ~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~ 240 (548)
...||++..++-.+ .-.+-+... ........|+|||.-|+-+-||. .|-.+. .+|-. +..|.
T Consensus 81 ~s~DGkf~il~k~~--rVE~sv~AH----~~A~~~gRW~~dGtgLlt~GEDG---------~iKiWS-rsGML--RStl~ 142 (737)
T KOG1524|consen 81 CSNDGRFVILNKSA--RVERSISAH----AAAISSGRWSPDGAGLLTAGEDG---------VIKIWS-RSGML--RSTVV 142 (737)
T ss_pred EcCCceEEEecccc--hhhhhhhhh----hhhhhhcccCCCCceeeeecCCc---------eEEEEe-ccchH--HHHHh
Confidence 33577888887664 323334332 12234557999999988765542 233333 33421 23455
Q ss_pred ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC
Q 008927 241 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE 282 (548)
Q Consensus 241 ~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~ 282 (548)
+....+...+|.||...++|.. +.++++-++..
T Consensus 143 Q~~~~v~c~~W~p~S~~vl~c~---------g~h~~IKpL~~ 175 (737)
T KOG1524|consen 143 QNEESIRCARWAPNSNSIVFCQ---------GGHISIKPLAA 175 (737)
T ss_pred hcCceeEEEEECCCCCceEEec---------CCeEEEeeccc
Confidence 5544555679999999999986 34566666653
No 244
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=90.96 E-value=8.8 Score=38.60 Aligned_cols=138 Identities=7% Similarity=0.038 Sum_probs=72.4
Q ss_pred EEEEEECCCCCccCcEEeee---cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCC
Q 008927 222 EIVAIALNGQNIQEPKVLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT 298 (548)
Q Consensus 222 ~l~~idl~~g~~~~~~~L~~---~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~ 298 (548)
+||+.|+..=+. ...|.. ..........++++.+|||=... +..+++++|+..- .....+...+
T Consensus 107 ~IyIydI~~Mkl--LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~------t~GdV~l~d~~nl---~~v~~I~aH~-- 173 (391)
T KOG2110|consen 107 SIYIYDIKDMKL--LHTIETTPPNPKGLCALSPNNANCYLAYPGST------TSGDVVLFDTINL---QPVNTINAHK-- 173 (391)
T ss_pred cEEEEeccccee--ehhhhccCCCccceEeeccCCCCceEEecCCC------CCceEEEEEcccc---eeeeEEEecC--
Confidence 599999987431 111211 11123444555666788875311 3578999998642 2333444433
Q ss_pred cccCCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCe-eEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEE
Q 008927 299 IVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 376 (548)
Q Consensus 299 ~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~-~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~ 376 (548)
..+..++|++||. |+-.+++ .---++| ...+|+ ..+.-.+- .+. ...+.+|.+ ++..| ....
T Consensus 174 --~~lAalafs~~G~llATASeK-GTVIRVf--~v~~G~kl~eFRRG~----~~~---~IySL~Fs~---ds~~L-~~sS 237 (391)
T KOG2110|consen 174 --GPLAALAFSPDGTLLATASEK-GTVIRVF--SVPEGQKLYEFRRGT----YPV---SIYSLSFSP---DSQFL-AASS 237 (391)
T ss_pred --CceeEEEECCCCCEEEEeccC-ceEEEEE--EcCCccEeeeeeCCc----eee---EEEEEEECC---CCCeE-EEec
Confidence 5677889999999 5555666 2222333 333443 22221110 011 112245654 55544 4444
Q ss_pred eCCeEEEEEEEC
Q 008927 377 QNGRSYLGILDD 388 (548)
Q Consensus 377 ~~g~~~L~~~dl 388 (548)
..+.-|++.++.
T Consensus 238 ~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 238 NTETVHIFKLEK 249 (391)
T ss_pred CCCeEEEEEecc
Confidence 557778887764
No 245
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=90.83 E-value=1.7 Score=34.82 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=41.4
Q ss_pred ceeeCCCCCEEEEEEeccC-C-C-------CCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEE
Q 008927 195 DGIFDPRFNRYVTVREDRR-Q-D-------ALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE 262 (548)
Q Consensus 195 ~~~~SpDG~~i~~v~~~~~-~-~-------~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~ 262 (548)
++.+++++..|+|...... + . ......+|+.+|..+++ .++|..+-.|-...++|||++.|++..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~---~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE---TTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE---EEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe---EEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 3567778666777632211 0 0 02245799999999998 888888766667779999999988665
No 246
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=90.75 E-value=0.45 Score=47.66 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=47.1
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCC
Q 008927 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGL 538 (548)
Q Consensus 464 i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGy 538 (548)
-.|.+. ||..+....+.+.+ .+.-+||.+||.=.. ..-|...++.|+++||.|+..|-||=..-
T Consensus 12 ~~~~~~-d~~~~~~~~~~~~~--------~~~g~Vvl~HG~~Eh--~~ry~~la~~l~~~G~~V~~~D~RGhG~S 75 (298)
T COG2267 12 GYFTGA-DGTRLRYRTWAAPE--------PPKGVVVLVHGLGEH--SGRYEELADDLAARGFDVYALDLRGHGRS 75 (298)
T ss_pred ceeecC-CCceEEEEeecCCC--------CCCcEEEEecCchHH--HHHHHHHHHHHHhCCCEEEEecCCCCCCC
Confidence 456675 99999998888742 122899999998322 12344568899999999999999985443
No 247
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=90.51 E-value=7 Score=42.43 Aligned_cols=122 Identities=11% Similarity=0.038 Sum_probs=65.1
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCC
Q 008927 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (548)
Q Consensus 192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~ 271 (548)
.+..+..||+|+.|+-.+.... ....-|++++..+-.. ...|....--+....|||||++|+=++.++
T Consensus 527 Ev~~l~~s~~gnliASaCKS~~----~ehAvI~lw~t~~W~~--~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR------ 594 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSSL----KEHAVIRLWNTANWLQ--VQELEGHSLTVTRLAFSPDGRYLLSVSRDR------ 594 (764)
T ss_pred eEEEEEecCCCCEEeehhhhCC----ccceEEEEEeccchhh--hheecccceEEEEEEECCCCcEEEEeecCc------
Confidence 3446778899887765443221 1235677777766431 233443333367889999999998676443
Q ss_pred CceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEe
Q 008927 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWI 331 (548)
Q Consensus 272 ~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d 331 (548)
.-.||-.--+...+. +..++.... .-+-...|+||++.++.+.| +-.--+|...
T Consensus 595 t~sl~~~~~~~~~e~-~fa~~k~Ht----RIIWdcsW~pde~~FaTaSR-DK~VkVW~~~ 648 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEF-RFACLKAHT----RIIWDCSWSPDEKYFATASR-DKKVKVWEEP 648 (764)
T ss_pred eEEeeeeecccchhh-hhccccccc----eEEEEcccCcccceeEEecC-CceEEEEecc
Confidence 223444311101111 011111111 23456789999875555555 5555556554
No 248
>PRK05855 short chain dehydrogenase; Validated
Probab=90.50 E-value=0.54 Score=51.64 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=39.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
||.+++.+.+-+ ..-|.||++||.+.... .|....+.| ++||.|+.+|+||-
T Consensus 11 ~g~~l~~~~~g~----------~~~~~ivllHG~~~~~~--~w~~~~~~L-~~~~~Vi~~D~~G~ 62 (582)
T PRK05855 11 DGVRLAVYEWGD----------PDRPTVVLVHGYPDNHE--VWDGVAPLL-ADRFRVVAYDVRGA 62 (582)
T ss_pred CCEEEEEEEcCC----------CCCCeEEEEcCCCchHH--HHHHHHHHh-hcceEEEEecCCCC
Confidence 898998776532 12378999999986553 355666777 78999999999984
No 249
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.30 E-value=3.5 Score=47.01 Aligned_cols=258 Identities=12% Similarity=0.152 Sum_probs=128.2
Q ss_pred CccCceEEcC-CCcEE-EEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCe
Q 008927 89 KRLGGTAVDG-HGRLI-WLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR 166 (548)
Q Consensus 89 ~~~~~~~~sp-g~~i~-~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~ 166 (548)
-++..+.|++ |++-- -+.+ .-|+|...||-....-.+....+...--.....| -|-.|.+..+-++-+...++.
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaG-G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V---~gLDfN~~q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAG-GLEDGNIVLYDPASIIANASEEVLATKSKHTGPV---LGLDFNPFQGNLLASGADDGE 140 (1049)
T ss_pred ccceeeeecccCCCccceeec-cccCCceEEecchhhccCcchHHHhhhcccCCce---eeeeccccCCceeeccCCCCc
Confidence 4566777777 66521 0111 2356777777554310012333322100000111 012455555545555556788
Q ss_pred EEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecC--C
Q 008927 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS--D 244 (548)
Q Consensus 167 Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~--~ 244 (548)
||+=|+.. -.++.+...-.....+..++|...-++|++... ......++|++..+. ...+.... .
T Consensus 141 I~iWDlnn---~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s--------~sg~~~iWDlr~~~p--ii~ls~~~~~~ 207 (1049)
T KOG0307|consen 141 ILIWDLNK---PETPFTPGSQAPPSEIKCLSWNRKVSHILASGS--------PSGRAVIWDLRKKKP--IIKLSDTPGRM 207 (1049)
T ss_pred EEEeccCC---cCCCCCCCCCCCcccceEeccchhhhHHhhccC--------CCCCceeccccCCCc--ccccccCCCcc
Confidence 99888863 223444321001122344556655556555321 123567778877651 22233222 2
Q ss_pred ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCC
Q 008927 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG 323 (548)
Q Consensus 245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g 323 (548)
..+...|.||+..-++++.+.... .-|-+-|+.-.-. ..+.+.+.. ..+....|.+.+. +++.+-+ ++
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~----PviqlWDlR~ass--P~k~~~~H~----~GilslsWc~~D~~lllSsgk-D~ 276 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSA----PVIQLWDLRFASS--PLKILEGHQ----RGILSLSWCPQDPRLLLSSGK-DN 276 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCC----ceeEeecccccCC--chhhhcccc----cceeeeccCCCCchhhhcccC-CC
Confidence 356778999988555566443322 2233334331111 234444443 4577889999886 7766655 43
Q ss_pred eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927 324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (548)
Q Consensus 324 ~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d 387 (548)
+++.++.++||+.--.+. .-.|.+.. .|.| ..-.++..+.-+|.-.||.+-
T Consensus 277 --~ii~wN~~tgEvl~~~p~-----~~nW~fdv---~w~p---r~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 277 --RIICWNPNTGEVLGELPA-----QGNWCFDV---QWCP---RNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred --CeeEecCCCceEeeecCC-----CCcceeee---eecC---CCcchhhhheeccceeeeeee
Confidence 688889888876432221 23566543 3443 222244444556777776553
No 250
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=90.28 E-value=24 Score=36.36 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=93.4
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee-cCC
Q 008927 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSD 244 (548)
Q Consensus 166 ~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~-~~~ 244 (548)
++|..... .++..+-+.. ..+......|.|+.++..+.+ ....--|+.+|.. ..++.. ..+
T Consensus 286 ~vws~~~~---s~~~~~~~h~----~~V~~ls~h~tgeYllsAs~d---------~~w~Fsd~~~g~~--lt~vs~~~s~ 347 (506)
T KOG0289|consen 286 RVWSVPLS---SEPTSSRPHE----EPVTGLSLHPTGEYLLSASND---------GTWAFSDISSGSQ--LTVVSDETSD 347 (506)
T ss_pred Eeeccccc---cCcccccccc----ccceeeeeccCCcEEEEecCC---------ceEEEEEccCCcE--EEEEeecccc
Confidence 44554443 3444444432 123445677888876654222 2333446666641 222222 122
Q ss_pred -ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCC
Q 008927 245 -FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (548)
Q Consensus 245 -~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~ 322 (548)
-+....|.|||- .|... .+ .+.|-+.|+.. +. +...+.+.. ..+....|+.+|- |+..+|.
T Consensus 348 v~~ts~~fHpDgL--ifgtg-t~-----d~~vkiwdlks-~~--~~a~Fpght----~~vk~i~FsENGY~Lat~add-- 410 (506)
T KOG0289|consen 348 VEYTSAAFHPDGL--IFGTG-TP-----DGVVKIWDLKS-QT--NVAKFPGHT----GPVKAISFSENGYWLATAADD-- 410 (506)
T ss_pred ceeEEeeEcCCce--EEecc-CC-----CceEEEEEcCC-cc--ccccCCCCC----CceeEEEeccCceEEEEEecC--
Confidence 266778999995 44442 22 46788889874 32 233344433 5678889999996 4444444
Q ss_pred CeeeEEEEeccCCe-eEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeec
Q 008927 323 GFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 397 (548)
Q Consensus 323 g~~~Ly~~d~~~g~-~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~ 397 (548)
+ .+..+|+..-+ .+.+.-.+ . .+...+.+.+ .|..|. .+ +..-++|.++-.+..++.+.
T Consensus 411 ~--~V~lwDLRKl~n~kt~~l~~-------~-~~v~s~~fD~---SGt~L~-~~--g~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 411 G--SVKLWDLRKLKNFKTIQLDE-------K-KEVNSLSFDQ---SGTYLG-IA--GSDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred C--eEEEEEehhhcccceeeccc-------c-ccceeEEEcC---CCCeEE-ee--cceeEEEEEecccccceeee
Confidence 3 26667763221 12222111 0 1233455542 344443 33 44567888877677776553
No 251
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=90.28 E-value=5.2 Score=40.67 Aligned_cols=189 Identities=11% Similarity=-0.010 Sum_probs=109.3
Q ss_pred CccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEE
Q 008927 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (548)
Q Consensus 89 ~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly 168 (548)
-.++++++||.+..|...+ ++|+..||-.... .+.+.|...++.+++- .|-|.. .++++..+++-+-
T Consensus 181 eaIRdlafSpnDskF~t~S---dDg~ikiWdf~~~--kee~vL~GHgwdVksv-------dWHP~k-gLiasgskDnlVK 247 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCS---DDGTIKIWDFRMP--KEERVLRGHGWDVKSV-------DWHPTK-GLIASGSKDNLVK 247 (464)
T ss_pred hhhheeccCCCCceeEEec---CCCeEEEEeccCC--chhheeccCCCCccee-------ccCCcc-ceeEEccCCceeE
Confidence 4688899998555544432 4688888865443 3678888888888754 455543 3666665666555
Q ss_pred EEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceee
Q 008927 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAF 248 (548)
Q Consensus 169 ~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~ 248 (548)
..|..++ ...-.|-.. .-.+....|+|+|.+|+..++|+ .+-++|+.+-+. ........+++..
T Consensus 248 lWDprSg-~cl~tlh~H----KntVl~~~f~~n~N~Llt~skD~---------~~kv~DiR~mkE--l~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 248 LWDPRSG-SCLATLHGH----KNTVLAVKFNPNGNWLLTGSKDQ---------SCKVFDIRTMKE--LFTYRGHKKDVTS 311 (464)
T ss_pred eecCCCc-chhhhhhhc----cceEEEEEEcCCCCeeEEccCCc---------eEEEEehhHhHH--HHHhhcchhhhee
Confidence 5566541 121222222 23466778999999998876653 577788875331 3333334456777
Q ss_pred eEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEe
Q 008927 249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD 319 (548)
Q Consensus 249 p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd 319 (548)
..|+|=-.-|. ++-. |++ .|+...+..... ...+.... + ..+.++.|.|=|.|+...+
T Consensus 312 ~~WhP~~~~lf-tsgg-----~Dg-svvh~~v~~~~p---~~~i~~AH-d--~~iwsl~~hPlGhil~tgs 369 (464)
T KOG0284|consen 312 LTWHPLNESLF-TSGG-----SDG-SVVHWVVGLEEP---LGEIPPAH-D--GEIWSLAYHPLGHILATGS 369 (464)
T ss_pred eccccccccce-eecc-----CCC-ceEEEecccccc---ccCCCccc-c--cceeeeeccccceeEeecC
Confidence 78999777664 3311 222 233333321111 11111111 2 4677889999998766643
No 252
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=90.28 E-value=0.27 Score=48.33 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=28.3
Q ss_pred cEEEEEccCccccccCc-cChHHHHHHhcCcEEEEeCCCCC
Q 008927 496 PLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 496 Pliv~iHGGP~~~~~~~-~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
|.||++||.+.....+. +...+..++..||.|+.+|+||.
T Consensus 31 ~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~ 71 (282)
T TIGR03343 31 EAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGF 71 (282)
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence 56899999765443221 22334567788999999999984
No 253
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=90.26 E-value=0.28 Score=47.04 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=38.3
Q ss_pred EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 536 (548)
Q Consensus 475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt 536 (548)
....++.|.. ...||+|++.||= ......|+-..|..+|.||+|+.|+.-...
T Consensus 33 kpLlI~tP~~-------~G~yPVilF~HG~--~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~ 85 (307)
T PF07224_consen 33 KPLLIVTPSE-------AGTYPVILFLHGF--NLYNSFYSQLLAHIASHGFIVVAPQLYTLF 85 (307)
T ss_pred CCeEEecCCc-------CCCccEEEEeech--hhhhHHHHHHHHHHhhcCeEEEechhhccc
Confidence 5677888864 4579999999984 122223344568889999999999876543
No 254
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.23 E-value=12 Score=38.72 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=51.8
Q ss_pred EEEEeCCCCeEEEE-eCCCCC---CCceecCCCCCCC----CceecceeeCCCCCEEEEEEeccC-----------CCCC
Q 008927 157 VIFSNYKDQRLYKH-SIDSKD---SSPLPITPDYGEP----LVSYADGIFDPRFNRYVTVREDRR-----------QDAL 217 (548)
Q Consensus 157 i~F~~~~~~~Ly~~-~~~~~~---~~~~~lT~~~~~~----~~~~~~~~~SpDG~~i~~v~~~~~-----------~~~~ 217 (548)
|+.++ ..+||++ +.++++ ++.+.|....... ......+.|.|||. |++...... ....
T Consensus 84 lyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~ 160 (367)
T TIGR02604 84 VYVAT--PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQ 160 (367)
T ss_pred EEEeC--CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCccc
Confidence 55554 4468877 444320 1344443321101 01133688999996 444222110 0001
Q ss_pred CceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCE
Q 008927 218 NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGER 257 (548)
Q Consensus 218 ~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~ 257 (548)
.....|++++.++++ .+++..+...-...+|+|+|+.
T Consensus 161 ~~~g~i~r~~pdg~~---~e~~a~G~rnp~Gl~~d~~G~l 197 (367)
T TIGR02604 161 GLGGGLFRYNPDGGK---LRVVAHGFQNPYGHSVDSWGDV 197 (367)
T ss_pred ccCceEEEEecCCCe---EEEEecCcCCCccceECCCCCE
Confidence 123579999999988 7777766544455689999874
No 255
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=90.16 E-value=19 Score=34.87 Aligned_cols=109 Identities=11% Similarity=0.058 Sum_probs=61.3
Q ss_pred cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCC----ccC-cEEeeecCCceeeeEECCCCCEEEEEEecCCCC
Q 008927 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN----IQE-PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM 268 (548)
Q Consensus 194 ~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~----~~~-~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~ 268 (548)
-...|+++|..++++.++.-. ....|.++|+.... ..+ ...|.....-.....|+|-|+.|..- +
T Consensus 97 k~~~F~~~gn~~l~~tD~~mg----~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G---h--- 166 (327)
T KOG0643|consen 97 KRVDFSFGGNLILASTDKQMG----YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG---H--- 166 (327)
T ss_pred EEEeeccCCcEEEEEehhhcC----cceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe---c---
Confidence 345689999998887543211 23566777776321 001 22333333345566899999988642 2
Q ss_pred CCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeC
Q 008927 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 320 (548)
Q Consensus 269 p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~ 320 (548)
+...|-.+|+.. |. ..+.... .....+...++++|...++.+.+
T Consensus 167 --e~G~is~~da~~-g~----~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 167 --EDGSISIYDART-GK----ELVDSDE-EHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred --CCCcEEEEEccc-Cc----eeeechh-hhccccccccccCCcceEEeccc
Confidence 245688888874 43 1111110 00035778899999865555444
No 256
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=89.55 E-value=0.76 Score=48.18 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=28.9
Q ss_pred CCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537 (548)
Q Consensus 494 ~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG 537 (548)
..|.||++||.+.... .|...+..|+. +|.|+.+|+||-.+
T Consensus 104 ~~p~vvllHG~~~~~~--~~~~~~~~L~~-~~~vi~~D~rG~G~ 144 (402)
T PLN02894 104 DAPTLVMVHGYGASQG--FFFRNFDALAS-RFRVIAIDQLGWGG 144 (402)
T ss_pred CCCEEEEECCCCcchh--HHHHHHHHHHh-CCEEEEECCCCCCC
Confidence 3488999999876432 23344556654 69999999998643
No 257
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=89.48 E-value=7 Score=38.06 Aligned_cols=112 Identities=11% Similarity=0.178 Sum_probs=66.9
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee----cCCceeeeEECC--CCCEEEEEEecC
Q 008927 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS----GSDFYAFPRMDP--RGERMAWIEWHH 265 (548)
Q Consensus 192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~----~~~~~~~p~~SP--DGk~La~~~~~~ 265 (548)
++.-..|-|+++.|+.+.+ +.|.+++++.+......++.. +...+...+||| ||..++-..
T Consensus 125 ~i~cvew~Pns~klasm~d----------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~--- 191 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDD----------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS--- 191 (370)
T ss_pred ceeeEEEcCCCCeeEEecc----------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC---
Confidence 4555679999999998742 468888888765100122221 122355668999 899988443
Q ss_pred CCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEE
Q 008927 266 PNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK 329 (548)
Q Consensus 266 ~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~ 329 (548)
.+.|+..|+.+..+ ...+.... + ..+....|.|+-+ ++..... +|+-+||-
T Consensus 192 ------d~tl~~~D~RT~~~---~~sI~dAH-g--q~vrdlDfNpnkq~~lvt~gD-dgyvriWD 243 (370)
T KOG1007|consen 192 ------DSTLQFWDLRTMKK---NNSIEDAH-G--QRVRDLDFNPNKQHILVTCGD-DGYVRIWD 243 (370)
T ss_pred ------CCcEEEEEccchhh---hcchhhhh-c--ceeeeccCCCCceEEEEEcCC-CccEEEEe
Confidence 35688888874322 22232211 1 3456678889887 4444444 66666654
No 258
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=89.26 E-value=1.2 Score=50.57 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=19.4
Q ss_pred hHHHHHHhcCcEEEEeCCCCCCC
Q 008927 515 LSIQYWTSRGWAFVDVNYGGSTG 537 (548)
Q Consensus 515 ~~~Q~~asrGyaVl~~NyRGStG 537 (548)
...++|+.|||+|+.+|.||..+
T Consensus 270 ~~~~~~~~rGYaVV~~D~RGtg~ 292 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVSGIGTRG 292 (767)
T ss_pred hHHHHHHhCCeEEEEEcCCCCCC
Confidence 34689999999999999998633
No 259
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=89.13 E-value=3.5 Score=40.89 Aligned_cols=141 Identities=14% Similarity=0.098 Sum_probs=73.7
Q ss_pred CCCCcCCHHHHhcCCCccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCC-----CCCCccccceeeCCe
Q 008927 74 SWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITP-----KEYAVRTTAQEYGGG 148 (548)
Q Consensus 74 ~w~spit~~~l~~~~~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~-----~~~~~r~~v~~ygg~ 148 (548)
.|+-|+..+........|..+++. ++...|+..-.. .....-|+.....+|-..++.. .+++.. -++
T Consensus 137 ~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~-sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmP------hSP 208 (335)
T TIGR03032 137 LWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQ-SDVADGWREGRRDGGCVIDIPSGEVVASGLSMP------HSP 208 (335)
T ss_pred ccCCccccccCccCceeecceeee-CCeEEEEEEeec-cCCcccccccccCCeEEEEeCCCCEEEcCccCC------cCC
Confidence 477777666666655778888887 666767642210 0000112221111111111111 111100 001
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCC-----------CC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-----------AL 217 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~-----------~~ 217 (548)
. +.+++|+|++...+.|+.+|+++ |+.+.+...+ .....+.|. |..++...+..++. -.
T Consensus 209 R--WhdgrLwvldsgtGev~~vD~~~--G~~e~Va~vp----G~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~ 278 (335)
T TIGR03032 209 R--WYQGKLWLLNSGRGELGYVDPQA--GKFQPVAFLP----GFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLD 278 (335)
T ss_pred c--EeCCeEEEEECCCCEEEEEcCCC--CcEEEEEECC----CCCccccee--CCEEEEEeccccCCCCcCCCchhhhhh
Confidence 1 35678999998889999999986 6666665542 233455566 66543322221110 02
Q ss_pred CceeEEEEEECCCCC
Q 008927 218 NSTTEIVAIALNGQN 232 (548)
Q Consensus 218 ~~~~~l~~idl~~g~ 232 (548)
+.+.-|++||+.+|+
T Consensus 279 ~~~CGv~vidl~tG~ 293 (335)
T TIGR03032 279 ALGCGVAVIDLNSGD 293 (335)
T ss_pred hhcccEEEEECCCCC
Confidence 235678899998887
No 260
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=89.12 E-value=0.67 Score=42.79 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=46.5
Q ss_pred CccCCCccCCeEEEeeccCCCe-EEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh-HHHHHHhcCcEEEE
Q 008927 452 LKYKSYFSLPELIEFPTEVPGQ-KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSRGWAFVD 529 (548)
Q Consensus 452 ~l~~~~~~~pe~i~~~s~~dG~-~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~-~~Q~~asrGyaVl~ 529 (548)
.|....+.+.|.+.|-- .|. .|.-|. |.+ .-|+.++||||-+......-.. .......|||+|+.
T Consensus 36 ~Lkn~~i~r~e~l~Yg~--~g~q~VDIwg--~~~---------~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vas 102 (270)
T KOG4627|consen 36 ELKNKQIIRVEHLRYGE--GGRQLVDIWG--STN---------QAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVAS 102 (270)
T ss_pred HhhhccccchhccccCC--CCceEEEEec--CCC---------CccEEEEEecchhhcCchhcccchhhhhhhcCeEEEE
Confidence 34555666777777743 333 355443 432 3499999999988655443332 34567889999999
Q ss_pred eCCCCCC
Q 008927 530 VNYGGST 536 (548)
Q Consensus 530 ~NyRGSt 536 (548)
+.|-=++
T Consensus 103 vgY~l~~ 109 (270)
T KOG4627|consen 103 VGYNLCP 109 (270)
T ss_pred eccCcCc
Confidence 9885443
No 261
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=89.07 E-value=1.1 Score=47.03 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=47.2
Q ss_pred CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCc----EEEEeCCCCC
Q 008927 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW----AFVDVNYGGS 535 (548)
Q Consensus 461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGy----aVl~~NyRGS 535 (548)
.+.++|.|..-|.+...++|.|.+ |+ .+++|+|++.||+.+......+ .....+++.|. +|+.+|.-.+
T Consensus 180 ~~~~~~~S~~Lg~~r~v~VY~P~~--y~---~~~~PvlyllDG~~w~~~~~~~-~~ld~li~~g~i~P~ivV~id~~~~ 252 (411)
T PRK10439 180 AKEIIWKSERLGNSRRVWIYTTGD--AA---PEERPLAILLDGQFWAESMPVW-PALDSLTHRGQLPPAVYLLIDAIDT 252 (411)
T ss_pred eEEEEEEccccCCceEEEEEECCC--CC---CCCCCEEEEEECHHhhhcCCHH-HHHHHHHHcCCCCceEEEEECCCCc
Confidence 356777775357778999999964 53 3689999999999876543322 33456777784 4688886433
No 262
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=89.05 E-value=2.9 Score=43.27 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=58.8
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeee--EECCCCCEEEEEEecCCCCCC
Q 008927 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFP--RMDPRGERMAWIEWHHPNMPW 270 (548)
Q Consensus 193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p--~~SPDGk~La~~~~~~~~~p~ 270 (548)
+.+..|-++|++.+-.+++. .-.|| +...+- +..+......++.| ..+|.|++++--+ .
T Consensus 345 i~~i~F~~~g~rFissSDdk-------s~riW--e~~~~v---~ik~i~~~~~hsmP~~~~~P~~~~~~aQs--~----- 405 (503)
T KOG0282|consen 345 ILDITFVDEGRRFISSSDDK-------SVRIW--ENRIPV---PIKNIADPEMHTMPCLTLHPNGKWFAAQS--M----- 405 (503)
T ss_pred eeeeEEccCCceEeeeccCc-------cEEEE--EcCCCc---cchhhcchhhccCcceecCCCCCeehhhc--c-----
Confidence 44567888888765544332 12344 433333 22222222234434 5689999876332 1
Q ss_pred CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccC
Q 008927 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN 334 (548)
Q Consensus 271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~ 334 (548)
.+.|++..+...-.....+...+.... +...+..|||||+.++.-|. +| .++.+|-.+
T Consensus 406 -dN~i~ifs~~~~~r~nkkK~feGh~va--Gys~~v~fSpDG~~l~SGds-dG--~v~~wdwkt 463 (503)
T KOG0282|consen 406 -DNYIAIFSTVPPFRLNKKKRFEGHSVA--GYSCQVDFSPDGRTLCSGDS-DG--KVNFWDWKT 463 (503)
T ss_pred -CceEEEEecccccccCHhhhhcceecc--CceeeEEEcCCCCeEEeecC-Cc--cEEEeechh
Confidence 345666654321111111222221100 23457889999997777665 56 455555444
No 263
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.03 E-value=43 Score=39.19 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=41.2
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEE
Q 008927 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE 262 (548)
Q Consensus 192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~ 262 (548)
.+.++.+--|+..|.++.+. .+|.++|.++.. ...+..-.+.+....||||++.++++.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~---------G~iilvd~et~~---~eivg~vd~GI~aaswS~Dee~l~liT 128 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITAL---------GDIILVDPETLE---LEIVGNVDNGISAASWSPDEELLALIT 128 (1265)
T ss_pred ceEEEEEecccceEEEEecC---------CcEEEEcccccc---eeeeeeccCceEEEeecCCCcEEEEEe
Confidence 44555666676666554322 368888888877 666655555577789999999999887
No 264
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.02 E-value=28 Score=35.27 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=66.7
Q ss_pred ccCceEEcCCCcEEEEEecCCCCC-ceEEEEcCCCCCCCCccc-CCCCCC-------ccccceeeCCeeeEEECCEEEEE
Q 008927 90 RLGGTAVDGHGRLIWLESRPTEAG-RGVLVKEPAKAGDEPSDI-TPKEYA-------VRTTAQEYGGGAFRIFGDTVIFS 160 (548)
Q Consensus 90 ~~~~~~~spg~~i~~~~~~~~e~g-r~~l~~~~~~~~~~~~~l-t~~~~~-------~r~~v~~ygg~~~~~~~~~i~F~ 160 (548)
....+++.+++.+++........+ ...|++.+.+| ...+.+ +|..+. .+..-..+.+-+++++|..|+..
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G-~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDG-RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCC-cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 344556632555554431110111 26788887763 223444 354431 11111122234566777766666
Q ss_pred eCCC---------------CeEEEEeCCCCCCC-ce----ecCCCC-CCCCceecceeeCCCCCEEEEEEeccCCCCCCc
Q 008927 161 NYKD---------------QRLYKHSIDSKDSS-PL----PITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNS 219 (548)
Q Consensus 161 ~~~~---------------~~Ly~~~~~~~~~~-~~----~lT~~~-~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~ 219 (548)
.... -+|+.++...+ ++ .. ++.+.. ......++++.+-+|++.|+. |+........
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~-~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL--ER~~~~~~~~ 241 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTP-GEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL--ERDFSPGTGN 241 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCC-CccceEEEEeCCccccccCCCCceeEEEECCCcEEEE--EccCCCCccc
Confidence 4221 25777777541 21 22 222100 001356778888999985444 3321111224
Q ss_pred eeEEEEEECCCC
Q 008927 220 TTEIVAIALNGQ 231 (548)
Q Consensus 220 ~~~l~~idl~~g 231 (548)
...||.+++...
T Consensus 242 ~~ri~~v~l~~a 253 (326)
T PF13449_consen 242 YKRIYRVDLSDA 253 (326)
T ss_pred eEEEEEEEcccc
Confidence 678999998753
No 265
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=89.00 E-value=0.86 Score=48.71 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=39.9
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh-HHHHHH---hcCcEEEEeCCCCC
Q 008927 465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWT---SRGWAFVDVNYGGS 535 (548)
Q Consensus 465 ~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~-~~Q~~a---srGyaVl~~NyRGS 535 (548)
.|-+. .|.++|.....|.++ ..-|.||++||.+.... .|.. .+..|+ .+||.|+.+|+||-
T Consensus 179 ~~~~~-~~~~l~~~~~gp~~~-------~~k~~VVLlHG~~~s~~--~W~~~~~~~L~~~~~~~yrVia~Dl~G~ 243 (481)
T PLN03087 179 SWLSS-SNESLFVHVQQPKDN-------KAKEDVLFIHGFISSSA--FWTETLFPNFSDAAKSTYRLFAVDLLGF 243 (481)
T ss_pred eeEee-CCeEEEEEEecCCCC-------CCCCeEEEECCCCccHH--HHHHHHHHHHHHHhhCCCEEEEECCCCC
Confidence 34443 567888888888531 12267899999986543 2321 123444 47999999999983
No 266
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=88.76 E-value=0.99 Score=44.97 Aligned_cols=58 Identities=26% Similarity=0.392 Sum_probs=38.0
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537 (548)
Q Consensus 472 G~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG 537 (548)
|.....|...|.+ .+.|+||..||==.+...+.....+..+..|||.|+..|.||=.|
T Consensus 60 ~~~~ldw~~~p~~--------~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~ 117 (345)
T COG0429 60 GFIDLDWSEDPRA--------AKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSG 117 (345)
T ss_pred CEEEEeeccCccc--------cCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccC
Confidence 4556777777743 345999999984222222211233456778999999999999544
No 267
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=88.68 E-value=7.4 Score=39.61 Aligned_cols=81 Identities=15% Similarity=0.177 Sum_probs=48.3
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCceec-ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee-
Q 008927 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYA-DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS- 241 (548)
Q Consensus 164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~-~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~- 241 (548)
+|+|+++|..+ .+.+.|... +++. ..+.|||+..|++. |.. ..+|.++=+.+.+.++.+.+++
T Consensus 198 ~GRl~~YD~~t--K~~~VLld~-----L~F~NGlaLS~d~sfvl~~-Et~-------~~ri~rywi~g~k~gt~EvFa~~ 262 (376)
T KOG1520|consen 198 TGRLFRYDPST--KVTKVLLDG-----LYFPNGLALSPDGSFVLVA-ETT-------TARIKRYWIKGPKAGTSEVFAEG 262 (376)
T ss_pred ccceEEecCcc--cchhhhhhc-----ccccccccCCCCCCEEEEE-eec-------cceeeeeEecCCccCchhhHhhc
Confidence 46888888876 566666553 4555 46899999998875 542 1344444444443111456665
Q ss_pred cCCceeeeEECCCCC-EEE
Q 008927 242 GSDFYAFPRMDPRGE-RMA 259 (548)
Q Consensus 242 ~~~~~~~p~~SPDGk-~La 259 (548)
-+++-.+-+.+++|. +++
T Consensus 263 LPG~PDNIR~~~~G~fWVa 281 (376)
T KOG1520|consen 263 LPGYPDNIRRDSTGHFWVA 281 (376)
T ss_pred CCCCCcceeECCCCCEEEE
Confidence 344434556677886 344
No 268
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=88.09 E-value=15 Score=36.17 Aligned_cols=96 Identities=17% Similarity=0.295 Sum_probs=54.1
Q ss_pred CCceeeeEECCCCCEEE-EEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCC
Q 008927 243 SDFYAFPRMDPRGERMA-WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 321 (548)
Q Consensus 243 ~~~~~~p~~SPDGk~La-~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~ 321 (548)
.|.++...|||.-+.++ -.+| + ..+.+.++...|.+..+..... + ..+....|+.||..+|+..-
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SW-------D-~tVR~wevq~~g~~~~ka~~~~-~----~PvL~v~WsddgskVf~g~~- 92 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSW-------D-GTVRIWEVQNSGQLVPKAQQSH-D----GPVLDVCWSDDGSKVFSGGC- 92 (347)
T ss_pred ccchheeEeccccCceEEeccc-------C-CceEEEEEecCCcccchhhhcc-C----CCeEEEEEccCCceEEeecc-
Confidence 45677888999444333 2344 3 3355556654454322111111 1 34677899999997777654
Q ss_pred CCeeeEEEEeccCCeeEeecccccccCCCcccc
Q 008927 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354 (548)
Q Consensus 322 ~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~ 354 (548)
++ ++-.+|++++++.++...++-+..-.|+.
T Consensus 93 Dk--~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 93 DK--QAKLWDLASGQVSQVAAHDAPVKTCHWVP 123 (347)
T ss_pred CC--ceEEEEccCCCeeeeeecccceeEEEEec
Confidence 44 45567888998887753333222334543
No 269
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.80 E-value=9.3 Score=42.19 Aligned_cols=160 Identities=8% Similarity=0.027 Sum_probs=78.4
Q ss_pred CccCceEEcCCCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccceeeCCeeeEEECCEEEEEeCCCCeEE
Q 008927 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (548)
Q Consensus 89 ~~~~~~~~spg~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~~ygg~~~~~~~~~i~F~~~~~~~Ly 168 (548)
-.+..+++.|-+.=||+.+-- +|...||.+... +...++.-. .+-+.+ .|+|||+..+.-.. +|..+
T Consensus 410 dfVTcVaFnPvDDryFiSGSL--D~KvRiWsI~d~---~Vv~W~Dl~-~lITAv------cy~PdGk~avIGt~-~G~C~ 476 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSL--DGKVRLWSISDK---KVVDWNDLR-DLITAV------CYSPDGKGAVIGTF-NGYCR 476 (712)
T ss_pred CeeEEEEecccCCCcEeeccc--ccceEEeecCcC---eeEeehhhh-hhheeE------EeccCCceEEEEEe-ccEEE
Confidence 445566777733445666433 688899988543 455554322 222332 56777654333221 22222
Q ss_pred EEeCCCCC---CCceecCCCCCCCCceecceeeCCC-CCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC
Q 008927 169 KHSIDSKD---SSPLPITPDYGEPLVSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (548)
Q Consensus 169 ~~~~~~~~---~~~~~lT~~~~~~~~~~~~~~~SpD-G~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~ 244 (548)
.++..+.+ ..-..++..++....++..+.+.|. -..|+.++.| .+|-++|+...+ +.....|..
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD---------SrIRI~d~~~~~---lv~KfKG~~ 544 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND---------SRIRIYDGRDKD---LVHKFKGFR 544 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCC---------CceEEEeccchh---hhhhhcccc
Confidence 22222200 0001111111101124556665552 2355555443 467778876655 322222211
Q ss_pred ---ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEec
Q 008927 245 ---FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS 281 (548)
Q Consensus 245 ---~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~ 281 (548)
......|+.||++|+..+ +...+|+-+.+
T Consensus 545 n~~SQ~~Asfs~Dgk~IVs~s--------eDs~VYiW~~~ 576 (712)
T KOG0283|consen 545 NTSSQISASFSSDGKHIVSAS--------EDSWVYIWKND 576 (712)
T ss_pred cCCcceeeeEccCCCEEEEee--------cCceEEEEeCC
Confidence 123457899999998766 23568888765
No 270
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.76 E-value=34 Score=35.72 Aligned_cols=204 Identities=10% Similarity=0.020 Sum_probs=117.8
Q ss_pred CCccccCCCCCCCcCCHHHHhcCCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcccCCCCCCccccce
Q 008927 65 QDKITAPYGSWKSPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQ 143 (548)
Q Consensus 65 ~~~~~~~~g~w~spit~~~l~~~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~lt~~~~~~r~~v~ 143 (548)
..-.+.-|+ -++..-...+.+..-.+...+++| ++.++-..+ +++...+|..+.. ....+|+..+-.+|.
T Consensus 88 ~sG~V~vfD-~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~s---Dd~v~k~~d~s~a--~v~~~l~~htDYVR~--- 158 (487)
T KOG0310|consen 88 ESGHVKVFD-MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGS---DDKVVKYWDLSTA--YVQAELSGHTDYVRC--- 158 (487)
T ss_pred CcCcEEEec-cccHHHHHHHhhccCceeEEEecccCCeEEEecC---CCceEEEEEcCCc--EEEEEecCCcceeEe---
Confidence 344555666 455555666766656677888899 776655432 2344455655433 122245555555664
Q ss_pred eeCCeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEE
Q 008927 144 EYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (548)
Q Consensus 144 ~ygg~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l 223 (548)
++|+|..+.|+++-.-|+-|-..|+.. ..++.++-. .+..+.+..+-|.|..|+-- .. +.+
T Consensus 159 ----g~~~~~~~hivvtGsYDg~vrl~DtR~--~~~~v~eln---hg~pVe~vl~lpsgs~iasA-gG---------n~v 219 (487)
T KOG0310|consen 159 ----GDISPANDHIVVTGSYDGKVRLWDTRS--LTSRVVELN---HGCPVESVLALPSGSLIASA-GG---------NSV 219 (487)
T ss_pred ----eccccCCCeEEEecCCCceEEEEEecc--CCceeEEec---CCCceeeEEEcCCCCEEEEc-CC---------CeE
Confidence 478888889999977777555445543 223333221 13456677788888876552 21 468
Q ss_pred EEEECCCCCccCcEEeeec---CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927 224 VAIALNGQNIQEPKVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (548)
Q Consensus 224 ~~idl~~g~~~~~~~L~~~---~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~ 300 (548)
-++|+-+|. +.++.. ..-+...++.-|+.+|.=.+- ...+-+++.. + ...+.+-. +.
T Consensus 220 kVWDl~~G~----qll~~~~~H~KtVTcL~l~s~~~rLlS~sL--------D~~VKVfd~t-~-----~Kvv~s~~--~~ 279 (487)
T KOG0310|consen 220 KVWDLTTGG----QLLTSMFNHNKTVTCLRLASDSTRLLSGSL--------DRHVKVFDTT-N-----YKVVHSWK--YP 279 (487)
T ss_pred EEEEecCCc----eehhhhhcccceEEEEEeecCCceEeeccc--------ccceEEEEcc-c-----eEEEEeee--cc
Confidence 888999764 344332 233566778888888763222 2345566643 1 22222211 11
Q ss_pred cCCcCceECcCCc-EEE
Q 008927 301 ESPTEPKWSSKGE-LFF 316 (548)
Q Consensus 301 ~~~~~~~wspDG~-L~~ 316 (548)
..+.+..-+||++ ++.
T Consensus 280 ~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 280 GPVLSIAVSPDDQTVVI 296 (487)
T ss_pred cceeeEEecCCCceEEE
Confidence 4567788899988 554
No 271
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=87.64 E-value=0.74 Score=45.26 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=32.1
Q ss_pred CCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 536 (548)
Q Consensus 492 ~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt 536 (548)
+.+||+||+.||=-.++ .-|+..---+||+||+|+.|..|-.+
T Consensus 115 ~~k~PvvvFSHGLggsR--t~YSa~c~~LAShG~VVaavEHRD~S 157 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLGGSR--TLYSAYCTSLASHGFVVAAVEHRDRS 157 (399)
T ss_pred CCCccEEEEecccccch--hhHHHHhhhHhhCceEEEEeecccCc
Confidence 67999999999943222 23444445699999999999998654
No 272
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.62 E-value=34 Score=34.63 Aligned_cols=126 Identities=10% Similarity=0.024 Sum_probs=67.8
Q ss_pred EECCEEEEEeCCC------CeEEEEeCCCCCCCceec-CCC-C-------C--CCCceecceeeCCCCCEEEEEEeccC-
Q 008927 152 IFGDTVIFSNYKD------QRLYKHSIDSKDSSPLPI-TPD-Y-------G--EPLVSYADGIFDPRFNRYVTVREDRR- 213 (548)
Q Consensus 152 ~~~~~i~F~~~~~------~~Ly~~~~~~~~~~~~~l-T~~-~-------~--~~~~~~~~~~~SpDG~~i~~v~~~~~- 213 (548)
+.++.++.+.+.. .+|++++.+| ...+.+ .+. . . .....+..++++|||+.|+.+.|..-
T Consensus 93 ~~~g~~~is~E~~~~~~~~p~I~~~~~~G--~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~ 170 (326)
T PF13449_consen 93 PPDGSFWISSEGGRTGGIPPRIRRFDLDG--RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLK 170 (326)
T ss_pred ecCCCEEEEeCCccCCCCCCEEEEECCCC--cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECcccc
Confidence 3555677777777 8999999886 333333 111 0 0 01123557899999998777666431
Q ss_pred -CCC-----CCceeEEEEEECCC-CCccCcEEeeec--------CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEE
Q 008927 214 -QDA-----LNSTTEIVAIALNG-QNIQEPKVLVSG--------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG 278 (548)
Q Consensus 214 -~~~-----~~~~~~l~~idl~~-g~~~~~~~L~~~--------~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~ 278 (548)
+.. ......|+.+|..+ ++. ..+....- ....+...+-+|++-|+ +.++....--...+||.+
T Consensus 171 ~d~~~~~~~~~~~~ri~~~d~~~~~~~-~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv-LER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 171 QDGPRANPDNGSPLRILRYDPKTPGEP-VAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV-LERDFSPGTGNYKRIYRV 248 (326)
T ss_pred CCCcccccccCceEEEEEecCCCCCcc-ceEEEEeCCccccccCCCCceeEEEECCCcEEE-EEccCCCCccceEEEEEE
Confidence 111 11236889999886 321 01222211 12245566777888444 553321100024577777
Q ss_pred Eec
Q 008927 279 YIS 281 (548)
Q Consensus 279 ~~~ 281 (548)
++.
T Consensus 249 ~l~ 251 (326)
T PF13449_consen 249 DLS 251 (326)
T ss_pred Ecc
Confidence 765
No 273
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=87.61 E-value=2.1 Score=43.87 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=38.1
Q ss_pred CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccC---ccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG---PTSEARGILNLSIQYWTSRGWAFVDVNYGGST 536 (548)
Q Consensus 461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGG---P~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt 536 (548)
|..+-++. ++. ..+-|.|... ...+.| ||.+||= +...+.......+.+|+++||.|+.+|+||..
T Consensus 38 ~~~~v~~~--~~~--~l~~~~~~~~-----~~~~~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g 106 (350)
T TIGR01836 38 PKEVVYRE--DKV--VLYRYTPVKD-----NTHKTP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPD 106 (350)
T ss_pred CCceEEEc--CcE--EEEEecCCCC-----cCCCCc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCC
Confidence 34444544 444 4444566421 122446 7778862 11111122345688999999999999999853
No 274
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=87.53 E-value=1.5 Score=35.10 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=34.8
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCceec-ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC
Q 008927 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYA-DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (548)
Q Consensus 164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~-~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~ 230 (548)
+|+|+++++.+ ++.+.|-.. +.++ ..++|+|++.|++. |.. +.+|.++-+.+
T Consensus 36 ~GRll~ydp~t--~~~~vl~~~-----L~fpNGVals~d~~~vlv~-Et~-------~~Ri~rywl~G 88 (89)
T PF03088_consen 36 TGRLLRYDPST--KETTVLLDG-----LYFPNGVALSPDESFVLVA-ETG-------RYRILRYWLKG 88 (89)
T ss_dssp -EEEEEEETTT--TEEEEEEEE-----ESSEEEEEE-TTSSEEEEE-EGG-------GTEEEEEESSS
T ss_pred CcCEEEEECCC--CeEEEehhC-----CCccCeEEEcCCCCEEEEE-ecc-------CceEEEEEEeC
Confidence 36999999998 666666543 4444 46799999997775 543 35677766654
No 275
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.53 E-value=30 Score=33.82 Aligned_cols=195 Identities=11% Similarity=0.049 Sum_probs=102.2
Q ss_pred eeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc-eeeeEECCCCCEEEEEEecCCCCCCCCce
Q 008927 196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAE 274 (548)
Q Consensus 196 ~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~-~~~p~~SPDGk~La~~~~~~~~~p~~~~~ 274 (548)
...+|||. |.|.... ...|-.+|..+|+ .++..-+.+. -......|||. +|+. +. ...
T Consensus 67 vapapdG~-VWft~qg--------~gaiGhLdP~tGe---v~~ypLg~Ga~Phgiv~gpdg~--~Wit-d~------~~a 125 (353)
T COG4257 67 VAPAPDGA-VWFTAQG--------TGAIGHLDPATGE---VETYPLGSGASPHGIVVGPDGS--AWIT-DT------GLA 125 (353)
T ss_pred cccCCCCc-eEEecCc--------cccceecCCCCCc---eEEEecCCCCCCceEEECCCCC--eeEe-cC------cce
Confidence 34667875 5665221 2467788999998 6665433322 12336789997 5665 11 123
Q ss_pred EEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccc
Q 008927 275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354 (548)
Q Consensus 275 L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~ 354 (548)
|..++-+ ..++++ ..+..+... .....+.|.++|.|+|+... |... ++|+..+.++ +.+.... .
T Consensus 126 I~R~dpk-t~evt~-f~lp~~~a~--~nlet~vfD~~G~lWFt~q~--G~yG--rLdPa~~~i~-vfpaPqG-------~ 189 (353)
T COG4257 126 IGRLDPK-TLEVTR-FPLPLEHAD--ANLETAVFDPWGNLWFTGQI--GAYG--RLDPARNVIS-VFPAPQG-------G 189 (353)
T ss_pred eEEecCc-ccceEE-eecccccCC--CcccceeeCCCccEEEeecc--ccce--ecCcccCcee-eeccCCC-------C
Confidence 3333333 233322 223332112 45678899999999998654 3332 5666555433 3221100 1
Q ss_pred cCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCc---eeEeeeecC-CEEEEEEecCCCCCeEEEEE
Q 008927 355 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT---DIDNITLGN-DCLFVEGASGVEPSSVAKVT 430 (548)
Q Consensus 355 ~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~---~~~~~s~d~-~~l~~~~ss~~~p~~l~~~d 430 (548)
+....+..| ++.+++....+ ..|.++|..++..+.+..|.. ....+..|. ++++... -..+.++++|
T Consensus 190 gpyGi~atp----dGsvwyaslag--naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~witt---wg~g~l~rfd 260 (353)
T COG4257 190 GPYGICATP----DGSVWYASLAG--NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT---WGTGSLHRFD 260 (353)
T ss_pred CCcceEECC----CCcEEEEeccc--cceEEcccccCCcceecCCCcccccccccccCccCcEEEec---cCCceeeEeC
Confidence 111233442 44566554332 357889988887776665432 122232333 4454442 2356889998
Q ss_pred cCCCce
Q 008927 431 LDDHKL 436 (548)
Q Consensus 431 ~~~~~~ 436 (548)
......
T Consensus 261 Ps~~sW 266 (353)
T COG4257 261 PSVTSW 266 (353)
T ss_pred cccccc
Confidence 876553
No 276
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=87.42 E-value=29 Score=38.81 Aligned_cols=154 Identities=17% Similarity=0.204 Sum_probs=81.4
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
.|-...++|||++...-.|-+-.+.| +|++.+.... -..-..++++--++.+++.-+. ...|-+.-|
T Consensus 1031 dfDC~e~mvyWtDv~g~SI~rasL~G--~Ep~ti~n~~---L~SPEGiAVDh~~Rn~ywtDS~--------lD~IevA~L 1097 (1289)
T KOG1214|consen 1031 DFDCRERMVYWTDVAGRSISRASLEG--AEPETIVNSG---LISPEGIAVDHIRRNMYWTDSV--------LDKIEVALL 1097 (1289)
T ss_pred ecccccceEEEeecCCCccccccccC--CCCceeeccc---CCCccceeeeeccceeeeeccc--------cchhheeec
Confidence 34344567888876666777778887 7777665421 0001112222233444443111 123445556
Q ss_pred CCCCccCcEEeeecCC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce
Q 008927 229 NGQNIQEPKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (548)
Q Consensus 229 ~~g~~~~~~~L~~~~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ 307 (548)
++.+ .+.|....- .-...+..|=+..|.|..|++. +..|-..+++ |+ +.+++...+. .-...+.
T Consensus 1098 dG~~---rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRe-----nPkIets~mD--G~--NrRilin~Di---gLPNGLt 1162 (1289)
T KOG1214|consen 1098 DGSE---RKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRE-----NPKIETSSMD--GE--NRRILINTDI---GLPNGLT 1162 (1289)
T ss_pred CCce---eeEEEeecccCcceEEeecccCceeecccccc-----CCcceeeccC--Cc--cceEEeeccc---CCCCCce
Confidence 6665 555553321 1123456777888999999875 3456666775 43 3455544331 2345677
Q ss_pred ECcCCcEEEEEeCCCCeeeEEEEec
Q 008927 308 WSSKGELFFVTDRKNGFWNLHKWIE 332 (548)
Q Consensus 308 wspDG~L~~~sd~~~g~~~Ly~~d~ 332 (548)
|.|..+++.-.|. |...|--+..
T Consensus 1163 fdpfs~~LCWvDA--Gt~rleC~~p 1185 (1289)
T KOG1214|consen 1163 FDPFSKLLCWVDA--GTKRLECTLP 1185 (1289)
T ss_pred eCcccceeeEEec--CCcceeEecC
Confidence 8888774444443 3334443333
No 277
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=87.40 E-value=0.7 Score=44.14 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=28.5
Q ss_pred CCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 536 (548)
Q Consensus 494 ~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt 536 (548)
+.|+||++||.+.... .|...++.|+ +||.|+.+|+||..
T Consensus 12 ~~~~iv~lhG~~~~~~--~~~~~~~~l~-~~~~vi~~D~~G~G 51 (257)
T TIGR03611 12 DAPVVVLSSGLGGSGS--YWAPQLDVLT-QRFHVVTYDHRGTG 51 (257)
T ss_pred CCCEEEEEcCCCcchh--HHHHHHHHHH-hccEEEEEcCCCCC
Confidence 3588999999876542 3334445554 68999999999853
No 278
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=87.34 E-value=0.98 Score=43.97 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=27.7
Q ss_pred cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
|.||++||.+.... .|....+.++ ++|.|+.+|+||-
T Consensus 29 ~~vv~~hG~~~~~~--~~~~~~~~l~-~~~~vi~~D~~G~ 65 (278)
T TIGR03056 29 PLLLLLHGTGASTH--SWRDLMPPLA-RSFRVVAPDLPGH 65 (278)
T ss_pred CeEEEEcCCCCCHH--HHHHHHHHHh-hCcEEEeecCCCC
Confidence 78999999875433 3455556664 5799999999983
No 279
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=87.20 E-value=2 Score=42.86 Aligned_cols=144 Identities=11% Similarity=0.125 Sum_probs=84.1
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927 155 DTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (548)
Q Consensus 155 ~~i~F~~~~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~ 233 (548)
..|+-+...+..|+++|+-. +.| +.++- .++-...+|+|.+ ..|+..+. ...||..|...=..
T Consensus 200 TsILas~~sDrsIvLyD~R~--~~Pl~KVi~-----~mRTN~IswnPea--fnF~~a~E-------D~nlY~~DmR~l~~ 263 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQ--ASPLKKVIL-----TMRTNTICWNPEA--FNFVAANE-------DHNLYTYDMRNLSR 263 (433)
T ss_pred chheeeeccCCceEEEeccc--CCccceeee-----eccccceecCccc--cceeeccc-------cccceehhhhhhcc
Confidence 34555545567899999876 433 34433 2466678999943 45654332 25799998765430
Q ss_pred cCcEEeeecC-CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCC
Q 008927 234 QEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (548)
Q Consensus 234 ~~~~~L~~~~-~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG 312 (548)
+-.+..+. ..+....+||-|+-++=-+.+ ..|.++.+.. +. .+-+-... +...+....||-|.
T Consensus 264 --p~~v~~dhvsAV~dVdfsptG~EfvsgsyD--------ksIRIf~~~~-~~---SRdiYhtk--RMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 264 --PLNVHKDHVSAVMDVDFSPTGQEFVSGSYD--------KSIRIFPVNH-GH---SRDIYHTK--RMQHVFCVKYSMDS 327 (433)
T ss_pred --cchhhcccceeEEEeccCCCcchhcccccc--------ceEEEeecCC-Cc---chhhhhHh--hhheeeEEEEeccc
Confidence 22222222 124566899999987633322 3577777763 43 12121111 11457788999999
Q ss_pred cEEEE-EeCCCCeeeEEEEec
Q 008927 313 ELFFV-TDRKNGFWNLHKWIE 332 (548)
Q Consensus 313 ~L~~~-sd~~~g~~~Ly~~d~ 332 (548)
+.++. +| ++.-.||+...
T Consensus 328 kyi~SGSd--d~nvRlWka~A 346 (433)
T KOG0268|consen 328 KYIISGSD--DGNVRLWKAKA 346 (433)
T ss_pred cEEEecCC--Ccceeeeecch
Confidence 85555 44 57778888664
No 280
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=86.79 E-value=33 Score=38.07 Aligned_cols=174 Identities=13% Similarity=0.124 Sum_probs=86.2
Q ss_pred EEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCccc
Q 008927 222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (548)
Q Consensus 222 ~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~ 301 (548)
+||. +...+ --.+....+|+.-..|.|--.+- |++-.- ...+.+-.+. +.+ +..-+.- . .
T Consensus 393 RLWh--~~~~~---CL~~F~HndfVTcVaFnPvDDry-FiSGSL------D~KvRiWsI~-d~~---Vv~W~Dl--~--~ 452 (712)
T KOG0283|consen 393 RLWH--PGRKE---CLKVFSHNDFVTCVAFNPVDDRY-FISGSL------DGKVRLWSIS-DKK---VVDWNDL--R--D 452 (712)
T ss_pred Eeec--CCCcc---eeeEEecCCeeEEEEecccCCCc-Eeeccc------ccceEEeecC-cCe---eEeehhh--h--h
Confidence 4554 44444 34556678899888999944432 455221 1244444554 222 1111221 1 4
Q ss_pred CCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEe-----ecccccccCCCcccccCcceeeeeecCCCCEEEEEEE
Q 008927 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-----IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 376 (548)
Q Consensus 302 ~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~-----l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~ 376 (548)
-+....++|||+.+++-.- .|.-.+|.. .+-+.+. +.....- .. .-+ ..+.+.|. +.+.|+++.+
T Consensus 453 lITAvcy~PdGk~avIGt~-~G~C~fY~t--~~lk~~~~~~I~~~~~Kk~-~~-~rI---TG~Q~~p~--~~~~vLVTSn 522 (712)
T KOG0283|consen 453 LITAVCYSPDGKGAVIGTF-NGYCRFYDT--EGLKLVSDFHIRLHNKKKK-QG-KRI---TGLQFFPG--DPDEVLVTSN 522 (712)
T ss_pred hheeEEeccCCceEEEEEe-ccEEEEEEc--cCCeEEEeeeEeeccCccc-cC-cee---eeeEecCC--CCCeEEEecC
Confidence 5788899999997777655 665555543 2333221 1111000 00 001 12334321 3346766654
Q ss_pred eCCeEEEEEEECCCCceEeecCCC----cee-EeeeecCCEEEEEEecCCCCCeEEEEEcC
Q 008927 377 QNGRSYLGILDDFGHSLSLLDIPF----TDI-DNITLGNDCLFVEGASGVEPSSVAKVTLD 432 (548)
Q Consensus 377 ~~g~~~L~~~dl~~g~~~~l~~~~----~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~ 432 (548)
.++|.++|+.+.++...-.++ ..+ ..++.||++|+.... -..+|+++.+
T Consensus 523 ---DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se----Ds~VYiW~~~ 576 (712)
T KOG0283|consen 523 ---DSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE----DSWVYIWKND 576 (712)
T ss_pred ---CCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec----CceEEEEeCC
Confidence 345677776444332211222 222 345678888876652 2567777653
No 281
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=86.79 E-value=34 Score=33.69 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=66.3
Q ss_pred ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEE-eCCC
Q 008927 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT-DRKN 322 (548)
Q Consensus 245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~s-d~~~ 322 (548)
.+....|+|||..+|=-.. ..+|++-++.++- ++.-.+.+.. ..+..+.|.+||. |+-.+ |+
T Consensus 49 eI~~~~F~P~gs~~aSgG~--------Dr~I~LWnv~gdc--eN~~~lkgHs----gAVM~l~~~~d~s~i~S~gtDk-- 112 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGS--------DRAIVLWNVYGDC--ENFWVLKGHS----GAVMELHGMRDGSHILSCGTDK-- 112 (338)
T ss_pred eEEEEEECCCCCeEeecCC--------cceEEEEeccccc--cceeeecccc----ceeEeeeeccCCCEEEEecCCc--
Confidence 3455689999997762111 2467777765322 2444555554 6789999999999 54443 44
Q ss_pred CeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCC
Q 008927 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (548)
Q Consensus 323 g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g 391 (548)
.++.+|.++|+...-......+.. ...+.. -+-.++.+...++.-.| .|...+
T Consensus 113 ---~v~~wD~~tG~~~rk~k~h~~~vN--------s~~p~r---rg~~lv~SgsdD~t~kl--~D~R~k 165 (338)
T KOG0265|consen 113 ---TVRGWDAETGKRIRKHKGHTSFVN--------SLDPSR---RGPQLVCSGSDDGTLKL--WDIRKK 165 (338)
T ss_pred ---eEEEEecccceeeehhccccceee--------ecCccc---cCCeEEEecCCCceEEE--Eeeccc
Confidence 789999999875433222222211 011221 24456666666665555 465443
No 282
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=86.78 E-value=42 Score=34.74 Aligned_cols=123 Identities=8% Similarity=-0.001 Sum_probs=69.5
Q ss_pred CceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCC
Q 008927 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (548)
Q Consensus 190 ~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p 269 (548)
.+.+....|.||| ++|.... ....|-.+|+.++.. ....-....-+....||-+|=+||-.+ +
T Consensus 347 ~v~~ts~~fHpDg--Lifgtgt-------~d~~vkiwdlks~~~--~a~Fpght~~vk~i~FsENGY~Lat~a-d----- 409 (506)
T KOG0289|consen 347 DVEYTSAAFHPDG--LIFGTGT-------PDGVVKIWDLKSQTN--VAKFPGHTGPVKAISFSENGYWLATAA-D----- 409 (506)
T ss_pred cceeEEeeEcCCc--eEEeccC-------CCceEEEEEcCCccc--cccCCCCCCceeEEEeccCceEEEEEe-c-----
Confidence 3567888899999 4554222 124567778887641 222222222356678999998888444 2
Q ss_pred CCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEee
Q 008927 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI 340 (548)
Q Consensus 270 ~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l 340 (548)
...+.+.|+..... ...+.-.+ . ..+....|..-|+++.+. ...-.+|.+.-.+.+++.+
T Consensus 410 --d~~V~lwDLRKl~n---~kt~~l~~-~--~~v~s~~fD~SGt~L~~~---g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 410 --DGSVKLWDLRKLKN---FKTIQLDE-K--KEVNSLSFDQSGTYLGIA---GSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred --CCeEEEEEehhhcc---cceeeccc-c--ccceeEEEcCCCCeEEee---cceeEEEEEecccccceee
Confidence 23488888874322 22222211 1 235667888888833333 1224677777555555444
No 283
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=86.71 E-value=6.4 Score=42.69 Aligned_cols=66 Identities=24% Similarity=0.375 Sum_probs=39.2
Q ss_pred ceeeCCCCCEEEEEEeccCCCCCC-----ceeE-----------EEEEECCCCCccCcEEeeecCC--ceeeeEECCCCC
Q 008927 195 DGIFDPRFNRYVTVREDRRQDALN-----STTE-----------IVAIALNGQNIQEPKVLVSGSD--FYAFPRMDPRGE 256 (548)
Q Consensus 195 ~~~~SpDG~~i~~v~~~~~~~~~~-----~~~~-----------l~~idl~~g~~~~~~~L~~~~~--~~~~p~~SPDGk 256 (548)
++.|+|+|. +++++|....... .... ++..+..+++ .+++..++. -...|.|+|||+
T Consensus 440 NL~~d~~G~--LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~---~~rf~~~P~gaE~tG~~fspDg~ 514 (524)
T PF05787_consen 440 NLAFDPDGN--LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGE---LKRFLVGPNGAEITGPCFSPDGR 514 (524)
T ss_pred ceEECCCCC--EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccc---eeeeccCCCCcccccceECCCCC
Confidence 467999987 3445765322100 0011 4455566666 666654432 257899999999
Q ss_pred EEEEEEecCC
Q 008927 257 RMAWIEWHHP 266 (548)
Q Consensus 257 ~La~~~~~~~ 266 (548)
.| |+.-.||
T Consensus 515 tl-FvniQHP 523 (524)
T PF05787_consen 515 TL-FVNIQHP 523 (524)
T ss_pred EE-EEEEeCC
Confidence 86 5665665
No 284
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.67 E-value=29 Score=33.36 Aligned_cols=149 Identities=11% Similarity=0.100 Sum_probs=81.0
Q ss_pred CCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeec
Q 008927 163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG 242 (548)
Q Consensus 163 ~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~ 242 (548)
..|+||++++++. +..+.+....- .-..-+..||+....+++++... ..|-+.|+.-.. .+.+.+.+.
T Consensus 36 G~G~L~ile~~~~-~gi~e~~s~d~--~D~LfdV~Wse~~e~~~~~a~GD--------GSLrl~d~~~~s-~Pi~~~kEH 103 (311)
T KOG0277|consen 36 GNGRLFILEVTDP-KGIQECQSYDT--EDGLFDVAWSENHENQVIAASGD--------GSLRLFDLTMPS-KPIHKFKEH 103 (311)
T ss_pred cCceEEEEecCCC-CCeEEEEeeec--ccceeEeeecCCCcceEEEEecC--------ceEEEeccCCCC-cchhHHHhh
Confidence 3578999998631 22333322210 11345778999888777765432 244455532221 012333343
Q ss_pred CCceeeeEECCCCCEEEEEEecCCCCCCCC-ceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeC
Q 008927 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDK-AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR 320 (548)
Q Consensus 243 ~~~~~~p~~SPDGk~La~~~~~~~~~p~~~-~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~ 320 (548)
..-+....|++--+++..++ .|+. -+||..++. . ..+...+.. ..+.+..|+|--. ++.....
T Consensus 104 ~~EV~Svdwn~~~r~~~lts------SWD~TiKLW~~~r~--~---Sv~Tf~gh~----~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 104 KREVYSVDWNTVRRRIFLTS------SWDGTIKLWDPNRP--N---SVQTFNGHN----SCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred hhheEEeccccccceeEEee------ccCCceEeecCCCC--c---ceEeecCCc----cEEEEEecCCCCCCeEEEccC
Confidence 33455667888666655443 1443 366655443 2 234455543 5678899999755 5554433
Q ss_pred CCCeeeEEEEeccCCeeEee
Q 008927 321 KNGFWNLHKWIESNNEVLAI 340 (548)
Q Consensus 321 ~~g~~~Ly~~d~~~g~~~~l 340 (548)
++..+||-++.. |+...+
T Consensus 169 -d~~l~lwdvr~~-gk~~~i 186 (311)
T KOG0277|consen 169 -DGTLRLWDVRSP-GKFMSI 186 (311)
T ss_pred -CceEEEEEecCC-CceeEE
Confidence 777888877764 554433
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=85.42 E-value=8.2 Score=37.54 Aligned_cols=78 Identities=12% Similarity=0.186 Sum_probs=41.5
Q ss_pred eEECCCCCEEEEEEecCCCCCCCCceEEEEEecCC-CceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeE
Q 008927 249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL 327 (548)
Q Consensus 249 p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~-g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~L 327 (548)
.+.++|||.||.+. ++.|-+-....+ ..+..+..+..++ . ..-....||||+.|+..++. .| .|
T Consensus 3 ~~~~~~Gk~lAi~q---------d~~iEiRsa~Ddf~si~~kcqVpkD~-~--PQWRkl~WSpD~tlLa~a~S-~G--~i 67 (282)
T PF15492_consen 3 LALSSDGKLLAILQ---------DQCIEIRSAKDDFSSIIGKCQVPKDP-N--PQWRKLAWSPDCTLLAYAES-TG--TI 67 (282)
T ss_pred eeecCCCcEEEEEe---------ccEEEEEeccCCchheeEEEecCCCC-C--chheEEEECCCCcEEEEEcC-CC--eE
Confidence 46789999999776 222333222211 1111122233222 1 23456899999996666554 55 45
Q ss_pred EEEeccCCeeEeec
Q 008927 328 HKWIESNNEVLAIY 341 (548)
Q Consensus 328 y~~d~~~g~~~~l~ 341 (548)
..+|+.+.+.-.+.
T Consensus 68 ~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 68 RVFDLMGSELFVIP 81 (282)
T ss_pred EEEecccceeEEcC
Confidence 55577665544443
No 286
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=85.35 E-value=1.9 Score=39.60 Aligned_cols=61 Identities=21% Similarity=0.370 Sum_probs=37.7
Q ss_pred eEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCcc-ChH----HHHHHhcCcEEEEeCCCC
Q 008927 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLS----IQYWTSRGWAFVDVNYGG 534 (548)
Q Consensus 462 e~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~-~~~----~Q~~asrGyaVl~~NyRG 534 (548)
+.|-++.. -| .+++.+-+++ .+..|+.|..|-=|. .+... |.- ...|..+||++|..||||
T Consensus 5 ~~v~i~Gp-~G-~le~~~~~~~--------~~~~~iAli~HPHPl--~gGtm~nkvv~~la~~l~~~G~atlRfNfRg 70 (210)
T COG2945 5 PTVIINGP-AG-RLEGRYEPAK--------TPAAPIALICHPHPL--FGGTMNNKVVQTLARALVKRGFATLRFNFRG 70 (210)
T ss_pred CcEEecCC-cc-cceeccCCCC--------CCCCceEEecCCCcc--ccCccCCHHHHHHHHHHHhCCceEEeecccc
Confidence 34555554 33 3566555442 245688888885554 33322 222 345788999999999999
No 287
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=85.30 E-value=3.8 Score=40.08 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=46.3
Q ss_pred EEeeccCCCe--EEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927 464 IEFPTEVPGQ--KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 536 (548)
Q Consensus 464 i~~~s~~dG~--~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt 536 (548)
+.|.+. +|. ++.+.+.--. |.+....+||-+||-|.++. .|-...+.|.+.|..|+.+||-|+.
T Consensus 9 ~k~~~~-~~~~~~~~a~y~D~~------~~gs~~gTVv~~hGsPGSH~--DFkYi~~~l~~~~iR~I~iN~PGf~ 74 (297)
T PF06342_consen 9 VKFQAE-NGKIVTVQAVYEDSL------PSGSPLGTVVAFHGSPGSHN--DFKYIRPPLDEAGIRFIGINYPGFG 74 (297)
T ss_pred EEcccc-cCceEEEEEEEEecC------CCCCCceeEEEecCCCCCcc--chhhhhhHHHHcCeEEEEeCCCCCC
Confidence 445554 554 4666664221 12445579999999998875 5667788999999999999999853
No 288
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.29 E-value=55 Score=34.76 Aligned_cols=108 Identities=12% Similarity=0.173 Sum_probs=51.0
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCC---C-CCceecceeeCCCC-----CEEEEEEeccCCCCCC-
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG---E-PLVSYADGIFDPRF-----NRYVTVREDRRQDALN- 218 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~---~-~~~~~~~~~~SpDG-----~~i~~v~~~~~~~~~~- 218 (548)
.|.+|| +|+++....++|++++..+ +..+.+....+ . ......+++++||- +..+|+..........
T Consensus 36 aflPDG-~llVtER~~G~I~~v~~~~--~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~ 112 (454)
T TIGR03606 36 LWGPDN-QLWVTERATGKILRVNPET--GEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL 112 (454)
T ss_pred EEcCCC-eEEEEEecCCEEEEEeCCC--CceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc
Confidence 344554 5666554368999998665 33333221110 0 01234567788774 2234443321111000
Q ss_pred -ceeEEEEEECCCC--CccCcEEeeec-C----CceeeeEECCCCCEEEE
Q 008927 219 -STTEIVAIALNGQ--NIQEPKVLVSG-S----DFYAFPRMDPRGERMAW 260 (548)
Q Consensus 219 -~~~~l~~idl~~g--~~~~~~~L~~~-~----~~~~~p~~SPDGk~La~ 260 (548)
....|.++.++.. .....+.|..+ + .+-...+|.|||+ |++
T Consensus 113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYV 161 (454)
T TIGR03606 113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYY 161 (454)
T ss_pred cCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEE
Confidence 2457877776532 21113333322 1 1234567999997 543
No 289
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=84.79 E-value=1.2 Score=42.03 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=29.1
Q ss_pred CCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 494 ~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
..|+||++||-+.... .|....+.+ ++||.|+.+|+||.
T Consensus 12 ~~~~li~~hg~~~~~~--~~~~~~~~l-~~~~~v~~~d~~G~ 50 (251)
T TIGR02427 12 GAPVLVFINSLGTDLR--MWDPVLPAL-TPDFRVLRYDKRGH 50 (251)
T ss_pred CCCeEEEEcCcccchh--hHHHHHHHh-hcccEEEEecCCCC
Confidence 4589999999755443 445555666 47999999999985
No 290
>PRK07581 hypothetical protein; Validated
Probab=84.39 E-value=1.5 Score=44.60 Aligned_cols=40 Identities=10% Similarity=-0.003 Sum_probs=27.2
Q ss_pred CCcEEEEEccCccccccCccChHH---HHHHhcCcEEEEeCCCCC
Q 008927 494 KPPLLVKSHGGPTSEARGILNLSI---QYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 494 ~~Pliv~iHGGP~~~~~~~~~~~~---Q~~asrGyaVl~~NyRGS 535 (548)
+.|+||++||++..... |.+.+ +.|...+|-|+.+|.||.
T Consensus 40 ~~~~vll~~~~~~~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~ 82 (339)
T PRK07581 40 KDNAILYPTWYSGTHQD--NEWLIGPGRALDPEKYFIIIPNMFGN 82 (339)
T ss_pred CCCEEEEeCCCCCCccc--chhhccCCCccCcCceEEEEecCCCC
Confidence 45788888887654322 22221 357678999999999984
No 291
>COG4099 Predicted peptidase [General function prediction only]
Probab=84.35 E-value=1.7 Score=42.56 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=37.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCC-cEEEEEccCccccccCcc----ChHHHHHHh--cCcEEEEeCC
Q 008927 471 PGQKAYAYYYPPSNPIYQASPEEKP-PLLVKSHGGPTSEARGIL----NLSIQYWTS--RGWAFVDVNY 532 (548)
Q Consensus 471 dG~~i~g~l~~P~~~~~~~~~~~~~-Pliv~iHGGP~~~~~~~~----~~~~Q~~as--rGyaVl~~Ny 532 (548)
-|.++.-.||-|++ +.+ +++| ||+|+.||+-.......- +...-.|++ -++.||.|.|
T Consensus 170 tgneLkYrly~Pkd--y~p--dkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy 234 (387)
T COG4099 170 TGNELKYRLYTPKD--YAP--DKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQY 234 (387)
T ss_pred cCceeeEEEecccc--cCC--CCccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEcccc
Confidence 58889999999964 653 7788 999999998654432211 011112222 2377888875
No 292
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=84.22 E-value=6.6 Score=41.06 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=48.4
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee--e
Q 008927 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--S 241 (548)
Q Consensus 164 ~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~--~ 241 (548)
.++.++++... .....+-.. .....-..++|||..|+.-+.+. .-.||+++.++.. ..++- .
T Consensus 427 ~G~w~V~d~e~--~~lv~~~~d----~~~ls~v~ysp~G~~lAvgs~d~-------~iyiy~Vs~~g~~---y~r~~k~~ 490 (626)
T KOG2106|consen 427 TGRWFVLDTET--QDLVTIHTD----NEQLSVVRYSPDGAFLAVGSHDN-------HIYIYRVSANGRK---YSRVGKCS 490 (626)
T ss_pred cceEEEEeccc--ceeEEEEec----CCceEEEEEcCCCCEEEEecCCC-------eEEEEEECCCCcE---EEEeeeec
Confidence 46778888764 322222211 12355567999999877643331 3467777766654 34432 2
Q ss_pred cCCceeeeEECCCCCEEE
Q 008927 242 GSDFYAFPRMDPRGERMA 259 (548)
Q Consensus 242 ~~~~~~~p~~SPDGk~La 259 (548)
+ .+.....||+|++.|.
T Consensus 491 g-s~ithLDwS~Ds~~~~ 507 (626)
T KOG2106|consen 491 G-SPITHLDWSSDSQFLV 507 (626)
T ss_pred C-ceeEEeeecCCCceEE
Confidence 3 5678889999999765
No 293
>PRK10349 carboxylesterase BioH; Provisional
Probab=83.86 E-value=1 Score=43.57 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=29.6
Q ss_pred CCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 493 ~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
+..|.||++||.+.... .|....+.|.. .|-|+.+|.||-
T Consensus 11 ~g~~~ivllHG~~~~~~--~w~~~~~~L~~-~~~vi~~Dl~G~ 50 (256)
T PRK10349 11 QGNVHLVLLHGWGLNAE--VWRCIDEELSS-HFTLHLVDLPGF 50 (256)
T ss_pred CCCCeEEEECCCCCChh--HHHHHHHHHhc-CCEEEEecCCCC
Confidence 34467999999765443 45666777764 599999999984
No 294
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=83.68 E-value=98 Score=36.32 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=25.3
Q ss_pred ccccCcceeeeeecCCCCEEEEEEE--eCC-eEEEEEEECCCCceEeec
Q 008927 352 WVFGINSYEIIQSHGEKNLIACSYR--QNG-RSYLGILDDFGHSLSLLD 397 (548)
Q Consensus 352 w~~~~~~~~~~~~~~d~~~l~~~~~--~~g-~~~L~~~dl~~g~~~~l~ 397 (548)
|..+....+|-. ||..+++++. ..+ +..|.+++-+ |++....
T Consensus 208 ~dd~~~~ISWRG---DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS 252 (928)
T PF04762_consen 208 WDDGRVRISWRG---DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS 252 (928)
T ss_pred cCCCceEEEECC---CCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc
Confidence 333445567764 6676666655 345 6778888765 6555443
No 295
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=83.61 E-value=45 Score=37.38 Aligned_cols=19 Identities=11% Similarity=0.366 Sum_probs=15.8
Q ss_pred CCEEEEEeCCCCeEEEEeCCC
Q 008927 154 GDTVIFSNYKDQRLYKHSIDS 174 (548)
Q Consensus 154 ~~~i~F~~~~~~~Ly~~~~~~ 174 (548)
+..|+|.. .++|..+++.+
T Consensus 990 gt~LL~aq--g~~I~~lplng 1008 (1289)
T KOG1214|consen 990 GTFLLYAQ--GQQIGYLPLNG 1008 (1289)
T ss_pred cceEEEec--cceEEEeecCc
Confidence 56788887 77899999986
No 296
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.23 E-value=43 Score=31.93 Aligned_cols=28 Identities=7% Similarity=0.312 Sum_probs=21.0
Q ss_pred CeeeEEECCEEEEEeCCCCeEEEEeCCC
Q 008927 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDS 174 (548)
Q Consensus 147 g~~~~~~~~~i~F~~~~~~~Ly~~~~~~ 174 (548)
|..|..+.+.|+|++-..+.|.+.|...
T Consensus 19 gp~w~~~~~sLl~VDi~ag~v~r~D~~q 46 (310)
T KOG4499|consen 19 GPHWDVERQSLLYVDIEAGEVHRYDIEQ 46 (310)
T ss_pred CCceEEecceEEEEEeccCceehhhhhh
Confidence 4567777788999987777777777765
No 297
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=82.47 E-value=2 Score=42.21 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=35.7
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
+|.+++.+.... +...|.||++||-+.... .|....+.|. ++|.|+.+|+||-
T Consensus 10 ~~~~~~~~~~~~---------~~~~~plvllHG~~~~~~--~w~~~~~~L~-~~~~vi~~Dl~G~ 62 (276)
T TIGR02240 10 DGQSIRTAVRPG---------KEGLTPLLIFNGIGANLE--LVFPFIEALD-PDLEVIAFDVPGV 62 (276)
T ss_pred CCcEEEEEEecC---------CCCCCcEEEEeCCCcchH--HHHHHHHHhc-cCceEEEECCCCC
Confidence 788888777532 111256799999654443 4555666664 5799999999985
No 298
>PRK06489 hypothetical protein; Provisional
Probab=82.37 E-value=2.8 Score=43.13 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=26.2
Q ss_pred CcEEEEEccCccccccCc-cChHHHH------HHhcCcEEEEeCCCCC
Q 008927 495 PPLLVKSHGGPTSEARGI-LNLSIQY------WTSRGWAFVDVNYGGS 535 (548)
Q Consensus 495 ~Pliv~iHGGP~~~~~~~-~~~~~Q~------~asrGyaVl~~NyRGS 535 (548)
-|.||++||++.+...+. ......+ +.+++|.|+.+|+||-
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~Gh 116 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGH 116 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCC
Confidence 377999999987543221 0111111 2368999999999984
No 299
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=82.23 E-value=60 Score=34.94 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=42.8
Q ss_pred eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCee
Q 008927 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 325 (548)
Q Consensus 246 ~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~ 325 (548)
....++||+.++|+.-.. .+.|.++|... +. ...+... -.....+|.|||.++++.+. .|.-
T Consensus 262 v~~ca~sp~E~kLvlGC~--------DgSiiLyD~~~-~~----t~~~ka~----~~P~~iaWHp~gai~~V~s~-qGel 323 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCE--------DGSIILYDTTR-GV----TLLAKAE----FIPTLIAWHPDGAIFVVGSE-QGEL 323 (545)
T ss_pred ceEEecCcccceEEEEec--------CCeEEEEEcCC-Ce----eeeeeec----ccceEEEEcCCCcEEEEEcC-CceE
Confidence 455689999999886552 35688888763 32 2222211 33466899999997667655 5655
Q ss_pred eEEEEec
Q 008927 326 NLHKWIE 332 (548)
Q Consensus 326 ~Ly~~d~ 332 (548)
++|=+-+
T Consensus 324 Q~FD~AL 330 (545)
T PF11768_consen 324 QCFDMAL 330 (545)
T ss_pred EEEEeec
Confidence 5554433
No 300
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=82.20 E-value=0.7 Score=26.89 Aligned_cols=25 Identities=24% Similarity=0.591 Sum_probs=20.6
Q ss_pred ccCCCCCCCCCCCCCccccCCCCCC
Q 008927 52 ASTSPVPETYSATQDKITAPYGSWK 76 (548)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~g~w~ 76 (548)
+.+||+|..+-..+.+.+.|.|.|.
T Consensus 5 tpaspapsdils~~pqs~rppgrwt 29 (29)
T PF05570_consen 5 TPASPAPSDILSSKPQSKRPPGRWT 29 (29)
T ss_pred CCCCCCcHHHHhcCccccCCCCCCC
Confidence 4478888888888888999999993
No 301
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=82.04 E-value=79 Score=34.05 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=30.3
Q ss_pred eEEEEEEECCCCceE-eecCC---------Ccee-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 380 RSYLGILDDFGHSLS-LLDIP---------FTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 380 ~~~L~~~dl~~g~~~-~l~~~---------~~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
...|+.+|+.+|+.. +...+ .... ..+...++.+ |+.+. -..||.+|.++|+.
T Consensus 365 ~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v-~~g~~---dG~l~ald~~tG~~ 428 (488)
T cd00216 365 KGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLV-FAGAA---DGYFRAFDATTGKE 428 (488)
T ss_pred ceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeE-EEECC---CCeEEEEECCCCce
Confidence 457999999999754 11111 0011 1223345544 44432 36899999998873
No 302
>PRK02888 nitrous-oxide reductase; Validated
Probab=81.80 E-value=89 Score=34.48 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=26.7
Q ss_pred EEEEEEECCC----C-c-eEeecCCCcee-EeeeecCCEEEEEEecCCCCCeEEEEEcCC
Q 008927 381 SYLGILDDFG----H-S-LSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDD 433 (548)
Q Consensus 381 ~~L~~~dl~~----g-~-~~~l~~~~~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~ 433 (548)
.++-++|..+ + + ...|..+..-. -.+++|++++++..- ..+.+-++|.+.
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank---lS~tVSVIDv~k 352 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK---LSPTVTVIDVRK 352 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC---CCCcEEEEEChh
Confidence 3567888776 2 2 23344332111 124789998776543 234566677654
No 303
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.79 E-value=31 Score=33.02 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=51.3
Q ss_pred EEeeecCCceeeeEECCCC-CEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEE
Q 008927 237 KVLVSGSDFYAFPRMDPRG-ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (548)
Q Consensus 237 ~~L~~~~~~~~~p~~SPDG-k~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~ 315 (548)
+.|....|++...+|.|.- -...+++.-. ....+.+...+.+.+.-+.+++...+ ..+....||.-|.++
T Consensus 201 ~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S-----qDg~viIwt~~~e~e~wk~tll~~f~----~~~w~vSWS~sGn~L 271 (299)
T KOG1332|consen 201 RTLEGHKDWVRDVAWAPSVGLPKSTIASCS-----QDGTVIIWTKDEEYEPWKKTLLEEFP----DVVWRVSWSLSGNIL 271 (299)
T ss_pred hhhhhcchhhhhhhhccccCCCceeeEEec-----CCCcEEEEEecCccCcccccccccCC----cceEEEEEeccccEE
Confidence 4466667777777787752 2222222111 11233333333222211234444433 346778999999977
Q ss_pred EEEeCCCCeeeEEEEeccCCeeEeec
Q 008927 316 FVTDRKNGFWNLHKWIESNNEVLAIY 341 (548)
Q Consensus 316 ~~sd~~~g~~~Ly~~d~~~g~~~~l~ 341 (548)
.++.- ++...||+-+. .|+.+++.
T Consensus 272 aVs~G-dNkvtlwke~~-~Gkw~~v~ 295 (299)
T KOG1332|consen 272 AVSGG-DNKVTLWKENV-DGKWEEVG 295 (299)
T ss_pred EEecC-CcEEEEEEeCC-CCcEEEcc
Confidence 77765 66677888776 45666553
No 304
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=81.67 E-value=53 Score=34.65 Aligned_cols=134 Identities=10% Similarity=0.045 Sum_probs=75.6
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
.|++..+.++-+...+|.+.+.|..| ..|. -...+....-..+..|||....|+.. -.- ...|+.+|.
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g--~sp~--~~~~~~HsAP~~gicfspsne~l~vs-VG~-------Dkki~~yD~ 238 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQG--MSPI--FHASEAHSAPCRGICFSPSNEALLVS-VGY-------DKKINIYDI 238 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccC--CCcc--cchhhhccCCcCcceecCCccceEEE-ecc-------cceEEEeec
Confidence 45666665555555567677778775 3332 21100001123467899987765442 221 146889998
Q ss_pred CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (548)
Q Consensus 229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w 308 (548)
...+. ...|+-.. -.+..+|+++|-+|+ .. + ...+|+.+|+..... +...+...+ .++...+|
T Consensus 239 ~s~~s--~~~l~y~~-Plstvaf~~~G~~L~-aG-~------s~G~~i~YD~R~~k~--Pv~v~sah~----~sVt~vaf 301 (673)
T KOG4378|consen 239 RSQAS--TDRLTYSH-PLSTVAFSECGTYLC-AG-N------SKGELIAYDMRSTKA--PVAVRSAHD----ASVTRVAF 301 (673)
T ss_pred ccccc--cceeeecC-CcceeeecCCceEEE-ee-c------CCceEEEEecccCCC--CceEeeecc----cceeEEEe
Confidence 76642 33454332 245678999998876 32 1 256899999985332 233333333 56777777
Q ss_pred CcC
Q 008927 309 SSK 311 (548)
Q Consensus 309 spD 311 (548)
-|-
T Consensus 302 q~s 304 (673)
T KOG4378|consen 302 QPS 304 (673)
T ss_pred eec
Confidence 554
No 305
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=81.60 E-value=2 Score=43.96 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=35.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC--------c-cChHH---HHHHhcCcEEEEeCCCC
Q 008927 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--------I-LNLSI---QYWTSRGWAFVDVNYGG 534 (548)
Q Consensus 471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~--------~-~~~~~---Q~~asrGyaVl~~NyRG 534 (548)
+|.+|+-..+-+.+ ....|.||++||=..+.... + |...+ ..|..++|.|+.+|+||
T Consensus 14 ~~~~~~y~~~g~~~-------~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G 82 (351)
T TIGR01392 14 SDVRVAYETYGTLN-------AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLG 82 (351)
T ss_pred CCceEEEEeccccC-------CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCC
Confidence 56666666554422 11237899999966643211 1 22222 25667899999999999
No 306
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=81.34 E-value=1.9 Score=42.76 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=30.9
Q ss_pred cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCC
Q 008927 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 536 (548)
Q Consensus 496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGSt 536 (548)
|.||++||.+.+.. .|...++.|+.+ |.|+.+|.||..
T Consensus 30 ~~vlllHG~~~~~~--~w~~~~~~L~~~-~~vi~~DlpG~G 67 (294)
T PLN02824 30 PALVLVHGFGGNAD--HWRKNTPVLAKS-HRVYAIDLLGYG 67 (294)
T ss_pred CeEEEECCCCCChh--HHHHHHHHHHhC-CeEEEEcCCCCC
Confidence 67899999987664 566677888876 699999999974
No 307
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.06 E-value=66 Score=32.57 Aligned_cols=237 Identities=11% Similarity=-0.009 Sum_probs=0.0
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCc
Q 008927 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (548)
Q Consensus 157 i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~ 236 (548)
|+++..+++.|+..|..+ ++..+-..+ -.-...+..++..|+.|+-.+.+-. -.||..+---.. .
T Consensus 122 ~v~~as~d~tikv~D~~t--g~~e~~LrG---Ht~sv~di~~~a~Gk~l~tcSsDl~-------~~LWd~~~~~~c---~ 186 (406)
T KOG0295|consen 122 LVVSASEDATIKVFDTET--GELERSLRG---HTDSVFDISFDASGKYLATCSSDLS-------AKLWDFDTFFRC---I 186 (406)
T ss_pred EEEEecCCceEEEEEccc--hhhhhhhhc---cccceeEEEEecCccEEEecCCccc-------hhheeHHHHHHH---H
Q ss_pred EEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEE
Q 008927 237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 316 (548)
Q Consensus 237 ~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~ 316 (548)
+.+......++.+.+=|-|.+|+=.+.++. |...+++ .|- ....+.+.. +.+...+-..||.|+.
T Consensus 187 ks~~gh~h~vS~V~f~P~gd~ilS~srD~t--------ik~We~~-tg~--cv~t~~~h~----ewvr~v~v~~DGti~A 251 (406)
T KOG0295|consen 187 KSLIGHEHGVSSVFFLPLGDHILSCSRDNT--------IKAWECD-TGY--CVKTFPGHS----EWVRMVRVNQDGTIIA 251 (406)
T ss_pred HHhcCcccceeeEEEEecCCeeeecccccc--------eeEEecc-cce--eEEeccCch----HhEEEEEecCCeeEEE
Q ss_pred EEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeee------cCCCCEEEEEEEeCCeEEEEEEECCC
Q 008927 317 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQS------HGEKNLIACSYRQNGRSYLGILDDFG 390 (548)
Q Consensus 317 ~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~------~~d~~~l~~~~~~~g~~~L~~~dl~~ 390 (548)
..+. +..-.+|.+. +++-+.+.. +...|.-..........|. +.++..+++...+++.-.++ |+.+
T Consensus 252 s~s~-dqtl~vW~~~--t~~~k~~lR---~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w--dv~t 323 (406)
T KOG0295|consen 252 SCSN-DQTLRVWVVA--TKQCKAELR---EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW--DVST 323 (406)
T ss_pred ecCC-CceEEEEEec--cchhhhhhh---ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE--eccC
Q ss_pred CceE-eecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 391 HSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 391 g~~~-~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
|..- .|-.....+.++ ++.|++|+-.+.. ..|.++|+.++.
T Consensus 324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD----ktlrvwdl~~~~ 367 (406)
T KOG0295|consen 324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADD----KTLRVWDLKNLQ 367 (406)
T ss_pred CeEEEEEecccceeeeeEEcCCCeEEEEEecC----CcEEEEEeccce
No 308
>PRK03204 haloalkane dehalogenase; Provisional
Probab=81.05 E-value=1.2 Score=44.11 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=26.6
Q ss_pred cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
|.||++||.|... ..|......|. ++|.|+.+|+||.
T Consensus 35 ~~iv~lHG~~~~~--~~~~~~~~~l~-~~~~vi~~D~~G~ 71 (286)
T PRK03204 35 PPILLCHGNPTWS--FLYRDIIVALR-DRFRCVAPDYLGF 71 (286)
T ss_pred CEEEEECCCCccH--HHHHHHHHHHh-CCcEEEEECCCCC
Confidence 6789999998433 23444445554 5699999999984
No 309
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=80.98 E-value=62 Score=32.21 Aligned_cols=102 Identities=15% Similarity=0.217 Sum_probs=57.7
Q ss_pred eeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceE
Q 008927 196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 275 (548)
Q Consensus 196 ~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L 275 (548)
.+|++|+..|+...+.+ .-.||...-..- ......|.+.........|+|.+.+|+=.+ ++ .+..+
T Consensus 16 hAwn~drt~iAv~~~~~-------evhiy~~~~~~~-w~~~htls~Hd~~vtgvdWap~snrIvtcs--~d----rnayV 81 (361)
T KOG1523|consen 16 HAWNSDRTQIAVSPNNH-------EVHIYSMLGADL-WEPAHTLSEHDKIVTGVDWAPKSNRIVTCS--HD----RNAYV 81 (361)
T ss_pred eeecCCCceEEeccCCc-------eEEEEEecCCCC-ceeceehhhhCcceeEEeecCCCCceeEcc--CC----CCccc
Confidence 46999999887764443 235665543330 111344555555566789999999997444 22 12334
Q ss_pred EEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEE
Q 008927 276 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV 317 (548)
Q Consensus 276 ~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~ 317 (548)
| ....+|++.....|-.-. .......|+|.+..+.+
T Consensus 82 w--~~~~~~~WkptlvLlRiN----rAAt~V~WsP~enkFAV 117 (361)
T KOG1523|consen 82 W--TQPSGGTWKPTLVLLRIN----RAATCVKWSPKENKFAV 117 (361)
T ss_pred c--ccCCCCeeccceeEEEec----cceeeEeecCcCceEEe
Confidence 4 442356654433333222 45667899999874433
No 310
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=80.85 E-value=4.2 Score=42.33 Aligned_cols=74 Identities=23% Similarity=0.179 Sum_probs=51.2
Q ss_pred CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccCh----HHHHHHhcCcEEEEeCCCCC
Q 008927 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL----SIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~----~~Q~~asrGyaVl~~NyRGS 535 (548)
+.|.....+. ||- |-.+=-.|.. +++.|.|++.||==.+.+.+..+. ..=.|+.+||=|-.-|.||
T Consensus 47 ~~E~h~V~T~-DgY-iL~lhRIp~~-------~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG- 116 (403)
T KOG2624|consen 47 PVEEHEVTTE-DGY-ILTLHRIPRG-------KKKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG- 116 (403)
T ss_pred ceEEEEEEcc-CCe-EEEEeeecCC-------CCCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC-
Confidence 5678888887 996 3333333432 146699999999655555544442 1235889999999999999
Q ss_pred CCCChhhh
Q 008927 536 TGLSSVPS 543 (548)
Q Consensus 536 tGyG~~f~ 543 (548)
+-|.|+..
T Consensus 117 n~ySr~h~ 124 (403)
T KOG2624|consen 117 NTYSRKHK 124 (403)
T ss_pred cccchhhc
Confidence 88988754
No 311
>PHA03098 kelch-like protein; Provisional
Probab=80.72 E-value=90 Score=33.90 Aligned_cols=190 Identities=7% Similarity=-0.077 Sum_probs=93.1
Q ss_pred eeEEEEEECCCCCccCcEEeeecC---CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCC
Q 008927 220 TTEIVAIALNGQNIQEPKVLVSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD 296 (548)
Q Consensus 220 ~~~l~~idl~~g~~~~~~~L~~~~---~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~ 296 (548)
..+++.+|+.+.+ -..+.... ...+. ..-+|+ |..+. ...+. -....++.+|... +.+. .+..-+
T Consensus 310 ~~~v~~yd~~~~~---W~~~~~~~~~R~~~~~--~~~~~~-lyv~G-G~~~~-~~~~~v~~yd~~~-~~W~---~~~~lp 377 (534)
T PHA03098 310 VNSVVSYDTKTKS---WNKVPELIYPRKNPGV--TVFNNR-IYVIG-GIYNS-ISLNTVESWKPGE-SKWR---EEPPLI 377 (534)
T ss_pred eccEEEEeCCCCe---eeECCCCCcccccceE--EEECCE-EEEEe-CCCCC-EecceEEEEcCCC-Ccee---eCCCcC
Confidence 4579999998887 44443221 11222 222444 43333 11110 0134677788763 4432 222211
Q ss_pred CCcccCCcCceECcCCcEEEEEeC---CCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEE
Q 008927 297 PTIVESPTEPKWSSKGELFFVTDR---KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC 373 (548)
Q Consensus 297 ~~~~~~~~~~~wspDG~L~~~sd~---~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~ 373 (548)
.. .. ....-.-+|+||++.-. +.....++++|+.+++.+.+.+... +.. +. .... -++.||+
T Consensus 378 ~~--r~-~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~----~r~--~~-~~~~-----~~~~iyv 442 (534)
T PHA03098 378 FP--RY-NPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI----SHY--GG-CAIY-----HDGKIYV 442 (534)
T ss_pred cC--Cc-cceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc----ccc--Cc-eEEE-----ECCEEEE
Confidence 00 11 11122346677777422 1123568999998888877653211 111 11 1111 2455655
Q ss_pred EEEeC------CeEEEEEEECCCCceEeecC-CCcee-EeeeecCCEEEEEEecCC--CCCeEEEEEcCCCce
Q 008927 374 SYRQN------GRSYLGILDDFGHSLSLLDI-PFTDI-DNITLGNDCLFVEGASGV--EPSSVAKVTLDDHKL 436 (548)
Q Consensus 374 ~~~~~------g~~~L~~~dl~~g~~~~l~~-~~~~~-~~~s~d~~~l~~~~ss~~--~p~~l~~~d~~~~~~ 436 (548)
..-.. ....++++|+++++++.+.. +.... ..+..-++.|++++.... ....++.+|+++.+.
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 42111 13458999999999988753 21111 112223566776664321 145788899877764
No 312
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=80.44 E-value=28 Score=34.53 Aligned_cols=105 Identities=15% Similarity=0.117 Sum_probs=66.3
Q ss_pred EEEEEeCCCCeEEEEeCCCCCC-CceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCcc
Q 008927 156 TVIFSNYKDQRLYKHSIDSKDS-SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (548)
Q Consensus 156 ~i~F~~~~~~~Ly~~~~~~~~~-~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~ 234 (548)
.|+|-..+.|+|=++++..... .|.-|-.. ...++-+.+.-+|..|+--++.. .=|-+.|..+|+.
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH----~s~Iacv~Ln~~Gt~vATaStkG--------TLIRIFdt~~g~~- 216 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAH----DSDIACVALNLQGTLVATASTKG--------TLIRIFDTEDGTL- 216 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcc----cCceeEEEEcCCccEEEEeccCc--------EEEEEEEcCCCcE-
Confidence 5899887789999999875211 12333332 23455567888998776643321 3455668888762
Q ss_pred CcEEeeecCCc--eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC
Q 008927 235 EPKVLVSGSDF--YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE 282 (548)
Q Consensus 235 ~~~~L~~~~~~--~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~ 282 (548)
...+..|.+. .....||||+++||..+ + ...|++..+..
T Consensus 217 -l~E~RRG~d~A~iy~iaFSp~~s~LavsS-d-------KgTlHiF~l~~ 257 (346)
T KOG2111|consen 217 -LQELRRGVDRADIYCIAFSPNSSWLAVSS-D-------KGTLHIFSLRD 257 (346)
T ss_pred -eeeeecCCchheEEEEEeCCCccEEEEEc-C-------CCeEEEEEeec
Confidence 3334444432 34568999999999554 3 45688888863
No 313
>PRK10673 acyl-CoA esterase; Provisional
Probab=80.36 E-value=2.3 Score=40.88 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=27.8
Q ss_pred CCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 494 ~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
..|.||++||.+.... .|......| +++|.|+.+|.||.
T Consensus 15 ~~~~iv~lhG~~~~~~--~~~~~~~~l-~~~~~vi~~D~~G~ 53 (255)
T PRK10673 15 NNSPIVLVHGLFGSLD--NLGVLARDL-VNDHDIIQVDMRNH 53 (255)
T ss_pred CCCCEEEECCCCCchh--HHHHHHHHH-hhCCeEEEECCCCC
Confidence 3488999999977653 343344444 46799999999984
No 314
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=80.10 E-value=59 Score=33.45 Aligned_cols=100 Identities=10% Similarity=0.060 Sum_probs=59.8
Q ss_pred EEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCC--CCCcc
Q 008927 223 IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF--DPTIV 300 (548)
Q Consensus 223 l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~--~~~~~ 300 (548)
|-.+|..++. .++-.+..+.+.....|+||..|.-.+ + ...|-++|+... ++ ..+.... ...
T Consensus 324 vRfwD~Rs~~---~~~sv~~gg~vtSl~ls~~g~~lLsss---R-----Ddtl~viDlRt~-eI--~~~~sA~g~k~a-- 387 (459)
T KOG0288|consen 324 VRFWDIRSAD---KTRSVPLGGRVTSLDLSMDGLELLSSS---R-----DDTLKVIDLRTK-EI--RQTFSAEGFKCA-- 387 (459)
T ss_pred eEEEeccCCc---eeeEeecCcceeeEeeccCCeEEeeec---C-----CCceeeeecccc-cE--EEEeeccccccc--
Confidence 6667777766 555555555678889999999876332 1 134667777632 21 1112111 000
Q ss_pred cCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec
Q 008927 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (548)
Q Consensus 301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~ 341 (548)
.......|||||+++..... +| .||.++..+|+.+.+.
T Consensus 388 sDwtrvvfSpd~~YvaAGS~-dg--sv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 388 SDWTRVVFSPDGSYVAAGSA-DG--SVYIWSVFTGKLEKVL 425 (459)
T ss_pred cccceeEECCCCceeeeccC-CC--cEEEEEccCceEEEEe
Confidence 12456789999985544222 23 5888888899887665
No 315
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=79.71 E-value=1.3 Score=42.73 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=25.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccC
Q 008927 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG 504 (548)
Q Consensus 471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGG 504 (548)
=|.+...++|.|.+ |. +.++||+|++.||-
T Consensus 4 Lg~~~~~~VylP~~--y~--~~~~~PvlylldG~ 33 (251)
T PF00756_consen 4 LGRDRRVWVYLPPG--YD--PSKPYPVLYLLDGQ 33 (251)
T ss_dssp TTEEEEEEEEECTT--GG--TTTTEEEEEEESHT
T ss_pred cCCeEEEEEEECCC--CC--CCCCCEEEEEccCC
Confidence 37788999999965 53 47899999999996
No 316
>PRK03592 haloalkane dehalogenase; Provisional
Probab=79.03 E-value=1.8 Score=43.02 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=29.6
Q ss_pred cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
|.||++||.|.+.. .|....+.|+.+| -|+.+|.||-
T Consensus 28 ~~vvllHG~~~~~~--~w~~~~~~L~~~~-~via~D~~G~ 64 (295)
T PRK03592 28 DPIVFLHGNPTSSY--LWRNIIPHLAGLG-RCLAPDLIGM 64 (295)
T ss_pred CEEEEECCCCCCHH--HHHHHHHHHhhCC-EEEEEcCCCC
Confidence 67899999986654 4556677888886 9999999975
No 317
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=79.00 E-value=1.7 Score=44.82 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=28.3
Q ss_pred cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
|.||++||.+.... .|...+..|+ .+|.|+.+|+||-
T Consensus 89 p~lvllHG~~~~~~--~w~~~~~~L~-~~~~via~Dl~G~ 125 (360)
T PLN02679 89 PPVLLVHGFGASIP--HWRRNIGVLA-KNYTVYAIDLLGF 125 (360)
T ss_pred CeEEEECCCCCCHH--HHHHHHHHHh-cCCEEEEECCCCC
Confidence 67899999986544 4555566665 4899999999974
No 318
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=78.98 E-value=4.4 Score=41.14 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=40.7
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC-ceeeeEECCCCCEEEEEE
Q 008927 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD-FYAFPRMDPRGERMAWIE 262 (548)
Q Consensus 193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~-~~~~p~~SPDGk~La~~~ 262 (548)
.-++.|+||+..+++-+-+ +.++.+|+..|. ...+..+.+ +....+|.|-+++|+-.+
T Consensus 126 iydL~Ws~d~~~l~s~s~d---------ns~~l~Dv~~G~---l~~~~~dh~~yvqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 126 IYDLAWSPDSNFLVSGSVD---------NSVRLWDVHAGQ---LLAILDDHEHYVQGVAWDPLNQYVASKS 184 (434)
T ss_pred hhhhhccCCCceeeeeecc---------ceEEEEEeccce---eEeeccccccccceeecchhhhhhhhhc
Confidence 4467899999988775433 578889999997 444443333 345668999999887544
No 319
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=78.80 E-value=67 Score=31.27 Aligned_cols=71 Identities=10% Similarity=0.035 Sum_probs=40.9
Q ss_pred eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeee
Q 008927 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (548)
Q Consensus 247 ~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~ 326 (548)
....+|+|+++++.+. +..+++.+.++.+++..+...++... ..-..-.|+....++.+.-+ +|.-.
T Consensus 162 ns~~~snd~~~~~~Vg--------ds~~Vf~y~id~~sey~~~~~~a~t~----D~gF~~S~s~~~~~FAv~~Q-dg~~~ 228 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVG--------DSRRVFRYAIDDESEYIENIYEAPTS----DHGFYNSFSENDLQFAVVFQ-DGTCA 228 (344)
T ss_pred eeeEEcCCCceEEEec--------CCCcceEEEeCCccceeeeeEecccC----CCceeeeeccCcceEEEEec-CCcEE
Confidence 3557899999998765 23467777777655532222233221 12234578877664444444 56666
Q ss_pred EEEE
Q 008927 327 LHKW 330 (548)
Q Consensus 327 Ly~~ 330 (548)
||-+
T Consensus 229 I~DV 232 (344)
T KOG4532|consen 229 IYDV 232 (344)
T ss_pred EEEe
Confidence 6544
No 320
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=78.42 E-value=83 Score=32.61 Aligned_cols=160 Identities=13% Similarity=0.087 Sum_probs=87.1
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
+|.+....++=+-..++.|.+.|+..+..+++..... -...+....|.|-+..|+....- ...|.++|+
T Consensus 234 ~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a---h~~~vn~~~fnp~~~~ilAT~S~--------D~tV~LwDl 302 (422)
T KOG0264|consen 234 AWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA---HSAEVNCVAFNPFNEFILATGSA--------DKTVALWDL 302 (422)
T ss_pred hccccchhhheeecCCCeEEEEEcCCCCCCCcccccc---cCCceeEEEeCCCCCceEEeccC--------CCcEEEeec
Confidence 4555544443333446778777876311333332221 12234556789988888776432 146888898
Q ss_pred CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCcee----------eeEEEcCCCCC
Q 008927 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY----------KRVCVAGFDPT 298 (548)
Q Consensus 229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~----------~~~~l~~~~~~ 298 (548)
+.=.. .+..+....+-+....|||+-+.|.-.+ . . ...|.+.|+..-|+.. +...+-++- .
T Consensus 303 RnL~~-~lh~~e~H~dev~~V~WSPh~etvLASS-g-~-----D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH-~ 373 (422)
T KOG0264|consen 303 RNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASS-G-T-----DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGH-T 373 (422)
T ss_pred hhccc-CceeccCCCcceEEEEeCCCCCceeEec-c-c-----CCcEEEEeccccccccChhhhccCCcceeEEecCc-c
Confidence 87540 1223333344567788999988775333 1 1 2456677765433210 011122221 1
Q ss_pred cccCCcCceECcCCc-EEEEEeCCCCeeeEEEEe
Q 008927 299 IVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI 331 (548)
Q Consensus 299 ~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d 331 (548)
..+..+.|.|+-- .+..... ++..+||.+.
T Consensus 374 --~kV~DfsWnp~ePW~I~Svae-DN~LqIW~~s 404 (422)
T KOG0264|consen 374 --AKVSDFSWNPNEPWTIASVAE-DNILQIWQMA 404 (422)
T ss_pred --cccccccCCCCCCeEEEEecC-CceEEEeecc
Confidence 4577889999876 5554444 5667777664
No 321
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=78.09 E-value=1.1e+02 Score=33.46 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=59.4
Q ss_pred ceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee--ec---CCceeeeEECCCCCEEEEEEecC
Q 008927 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SG---SDFYAFPRMDPRGERMAWIEWHH 265 (548)
Q Consensus 191 ~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~--~~---~~~~~~p~~SPDGk~La~~~~~~ 265 (548)
+.+..+..+.-|.+|+..+.| +.||.+|+.+-. ...+. .+ ..|+.--..||||..|+=.+++.
T Consensus 272 ~G~~nL~lDssGt~L~AsCtD---------~sIy~ynm~s~s---~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~ 339 (720)
T KOG0321|consen 272 VGQVNLILDSSGTYLFASCTD---------NSIYFYNMRSLS---ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDE 339 (720)
T ss_pred eeeEEEEecCCCCeEEEEecC---------CcEEEEeccccC---cCchhhccCcccceeeeeeecCCCCceEeccCCCc
Confidence 445667777778998887765 479999998755 33332 22 22455557899999887433321
Q ss_pred CCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcC--CcEEEEEe
Q 008927 266 PNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK--GELFFVTD 319 (548)
Q Consensus 266 ~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspD--G~L~~~sd 319 (548)
...+|+++-. .. ....+.+.. ..+....|.|- +.++-.+|
T Consensus 340 ------~ayiw~vs~~--e~--~~~~l~Ght----~eVt~V~w~pS~~t~v~TcSd 381 (720)
T KOG0321|consen 340 ------QAYIWVVSSP--EA--PPALLLGHT----REVTTVRWLPSATTPVATCSD 381 (720)
T ss_pred ------ceeeeeecCc--cC--ChhhhhCcc----eEEEEEeeccccCCCceeecc
Confidence 2344444321 11 234455543 44666778654 44444444
No 322
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=77.93 E-value=2.6 Score=39.86 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=43.1
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537 (548)
Q Consensus 464 i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG 537 (548)
...+.. ||..+.|..|+-.+ +.+-.+.+-|++. ....-|....++.+.+||.|+.-+|||+.+
T Consensus 8 ~~l~~~-DG~~l~~~~~pA~~---------~~~g~~~va~a~G-v~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~ 70 (281)
T COG4757 8 AHLPAP-DGYSLPGQRFPADG---------KASGRLVVAGATG-VGQYFYRRFAAAAAKAGFEVLTFDYRGIGQ 70 (281)
T ss_pred cccccC-CCccCccccccCCC---------CCCCcEEecccCC-cchhHhHHHHHHhhccCceEEEEecccccC
Confidence 456777 99999998886532 2233344556543 222234567788889999999999999764
No 323
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=77.67 E-value=54 Score=33.65 Aligned_cols=137 Identities=11% Similarity=0.040 Sum_probs=77.2
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
+|+|.+. .+-+...|+.|-+-+..-. .+.++|... ........|.|.-. ++++..+. +-+-.+|.
T Consensus 187 afSpnDs-kF~t~SdDg~ikiWdf~~~-kee~vL~GH----gwdVksvdWHP~kg-LiasgskD--------nlVKlWDp 251 (464)
T KOG0284|consen 187 AFSPNDS-KFLTCSDDGTIKIWDFRMP-KEERVLRGH----GWDVKSVDWHPTKG-LIASGSKD--------NLVKLWDP 251 (464)
T ss_pred ccCCCCc-eeEEecCCCeEEEEeccCC-chhheeccC----CCCcceeccCCccc-eeEEccCC--------ceeEeecC
Confidence 5666332 2223333554444444321 455666543 34556677999744 45543221 24566799
Q ss_pred CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (548)
Q Consensus 229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w 308 (548)
.+|.. .-.|......+....|+|+|.+|+-.+.+ ..+-++|+.. +++.++.-+.. ..+....|
T Consensus 252 rSg~c--l~tlh~HKntVl~~~f~~n~N~Llt~skD--------~~~kv~DiR~---mkEl~~~r~Hk----kdv~~~~W 314 (464)
T KOG0284|consen 252 RSGSC--LATLHGHKNTVLAVKFNPNGNWLLTGSKD--------QSCKVFDIRT---MKELFTYRGHK----KDVTSLTW 314 (464)
T ss_pred CCcch--hhhhhhccceEEEEEEcCCCCeeEEccCC--------ceEEEEehhH---hHHHHHhhcch----hhheeecc
Confidence 88862 22233333446778999999988855522 3577888763 22344444332 34677899
Q ss_pred CcCCc-EEEE
Q 008927 309 SSKGE-LFFV 317 (548)
Q Consensus 309 spDG~-L~~~ 317 (548)
+|=.+ |+..
T Consensus 315 hP~~~~lfts 324 (464)
T KOG0284|consen 315 HPLNESLFTS 324 (464)
T ss_pred ccccccceee
Confidence 99877 6554
No 324
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=77.55 E-value=32 Score=33.83 Aligned_cols=111 Identities=10% Similarity=-0.016 Sum_probs=60.7
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
.|.|+|. .+-+..-|.+|++-...++....-.++-. ...+.++.|.+|+..|+....| ..++.+|.
T Consensus 54 ~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lkgH----sgAVM~l~~~~d~s~i~S~gtD---------k~v~~wD~ 119 (338)
T KOG0265|consen 54 KFHPDGS-CFASGGSDRAIVLWNVYGDCENFWVLKGH----SGAVMELHGMRDGSHILSCGTD---------KTVRGWDA 119 (338)
T ss_pred EECCCCC-eEeecCCcceEEEEeccccccceeeeccc----cceeEeeeeccCCCEEEEecCC---------ceEEEEec
Confidence 4666443 22333335555555544421222334332 2346788899999998776444 36999999
Q ss_pred CCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecC
Q 008927 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE 282 (548)
Q Consensus 229 ~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~ 282 (548)
++|+. .+......+++....-+.-|-.|+-.. . +...+.+.|+..
T Consensus 120 ~tG~~--~rk~k~h~~~vNs~~p~rrg~~lv~Sg--s-----dD~t~kl~D~R~ 164 (338)
T KOG0265|consen 120 ETGKR--IRKHKGHTSFVNSLDPSRRGPQLVCSG--S-----DDGTLKLWDIRK 164 (338)
T ss_pred cccee--eehhccccceeeecCccccCCeEEEec--C-----CCceEEEEeecc
Confidence 99972 334444455554333343455555332 1 234566667764
No 325
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=77.20 E-value=33 Score=37.54 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=65.1
Q ss_pred cCCceeeeEECCCCCEEEEEEecCCCCCC---CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEE
Q 008927 242 GSDFYAFPRMDPRGERMAWIEWHHPNMPW---DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT 318 (548)
Q Consensus 242 ~~~~~~~p~~SPDGk~La~~~~~~~~~p~---~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~s 318 (548)
..|++....|+|+|..|.=.+.+..-|-| +++-||+-.+.- |++ .+.. .......|+|++..++..
T Consensus 266 HeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRl-Ge~------gg~a----~GF~g~lw~~n~~~ii~~ 334 (764)
T KOG1063|consen 266 HEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRL-GEV------GGSA----GGFWGGLWSPNSNVIIAH 334 (764)
T ss_pred cccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEe-ecc------cccc----cceeeEEEcCCCCEEEEe
Confidence 35677788999999766533333222223 344566655542 321 1222 345667899999755555
Q ss_pred eCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEE
Q 008927 319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (548)
Q Consensus 319 d~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~ 386 (548)
.+ .|.+++|. +.+.....++.-. ....-+.....|.| .|+ ++.+...+...+|+.-
T Consensus 335 g~-~Gg~hlWk-t~d~~~w~~~~~i------SGH~~~V~dv~W~p---sGe-flLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 335 GR-TGGFHLWK-TKDKTFWTQEPVI------SGHVDGVKDVDWDP---SGE-FLLSVSLDQTTRLFAR 390 (764)
T ss_pred cc-cCcEEEEe-ccCccceeecccc------ccccccceeeeecC---CCC-EEEEeccccceeeecc
Confidence 66 78889998 3323332222100 01122334455654 455 4445556667777643
No 326
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=76.94 E-value=2.8 Score=45.85 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=36.9
Q ss_pred EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccC-cc--ChHHHHHHhcCcEEEEeCCCC
Q 008927 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-IL--NLSIQYWTSRGWAFVDVNYGG 534 (548)
Q Consensus 475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~-~~--~~~~Q~~asrGyaVl~~NyRG 534 (548)
++--+|.|.... +.+ .|++|+||||--..... .+ -....++..+.-+|+.+|||=
T Consensus 97 LylNV~tp~~~~----~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRL 154 (545)
T KOG1516|consen 97 LYLNVYTPQGCS----ESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRL 154 (545)
T ss_pred ceEEEeccCCCc----cCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccc
Confidence 788889896421 112 99999999997533321 12 223345666789999999993
No 327
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=76.85 E-value=38 Score=33.48 Aligned_cols=168 Identities=15% Similarity=0.081 Sum_probs=81.8
Q ss_pred CceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC------------CCCccC----cEEeee
Q 008927 178 SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN------------GQNIQE----PKVLVS 241 (548)
Q Consensus 178 ~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~------------~g~~~~----~~~L~~ 241 (548)
|..-||..+ ..+|.+ .|||||..++--+.+ ..|-++|++ .|..+. .+.|..
T Consensus 104 Et~ylt~HK--~~cR~a--afs~DG~lvATGsaD---------~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD 170 (430)
T KOG0640|consen 104 ETKYLTSHK--SPCRAA--AFSPDGSLVATGSAD---------ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD 170 (430)
T ss_pred ceEEEeecc--cceeee--eeCCCCcEEEccCCc---------ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh
Confidence 344566654 245655 589999876543222 345555554 111111 233444
Q ss_pred cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeC
Q 008927 242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR 320 (548)
Q Consensus 242 ~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~ 320 (548)
..+-+....|.|-..-|+ .. .. ...|-++|+.... .+....+..+. +.+..+.|.|.|+ |++-+|.
T Consensus 171 H~devn~l~FHPre~ILi-S~-sr------D~tvKlFDfsK~s-aKrA~K~~qd~----~~vrsiSfHPsGefllvgTdH 237 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILI-SG-SR------DNTVKLFDFSKTS-AKRAFKVFQDT----EPVRSISFHPSGEFLLVGTDH 237 (430)
T ss_pred ccCcccceeecchhheEE-ec-cC------CCeEEEEecccHH-HHHHHHHhhcc----ceeeeEeecCCCceEEEecCC
Confidence 444455667888766443 22 21 2357777876321 11111122222 4567789999999 5544555
Q ss_pred CCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEE
Q 008927 321 KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (548)
Q Consensus 321 ~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~ 384 (548)
. -|.++|+++-+ -..+...+. +..-+......+ ....||.+...+|.-.||
T Consensus 238 --p--~~rlYdv~T~Q--cfvsanPd~---qht~ai~~V~Ys----~t~~lYvTaSkDG~Iklw 288 (430)
T KOG0640|consen 238 --P--TLRLYDVNTYQ--CFVSANPDD---QHTGAITQVRYS----STGSLYVTASKDGAIKLW 288 (430)
T ss_pred --C--ceeEEecccee--EeeecCccc---ccccceeEEEec----CCccEEEEeccCCcEEee
Confidence 2 34455554432 121110000 000111112222 356788888888866554
No 328
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=76.43 E-value=84 Score=31.18 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=25.2
Q ss_pred eecceeeCCCC----CEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee
Q 008927 192 SYADGIFDPRF----NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240 (548)
Q Consensus 192 ~~~~~~~SpDG----~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~ 240 (548)
.+.+++++... +..+|+.... ...|.++|+.+++ ..++.
T Consensus 62 ~lndl~VD~~~~~~~~~~aYItD~~-------~~glIV~dl~~~~---s~Rv~ 104 (287)
T PF03022_consen 62 FLNDLVVDVRDGNCDDGFAYITDSG-------GPGLIVYDLATGK---SWRVL 104 (287)
T ss_dssp GEEEEEEECTTTTS-SEEEEEEETT-------TCEEEEEETTTTE---EEEEE
T ss_pred ccceEEEEccCCCCcceEEEEeCCC-------cCcEEEEEccCCc---EEEEe
Confidence 45666665522 3678885443 2379999999987 55554
No 329
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=76.23 E-value=33 Score=32.73 Aligned_cols=89 Identities=18% Similarity=0.167 Sum_probs=50.8
Q ss_pred ceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (548)
Q Consensus 191 ~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~ 270 (548)
.|+.|...+|+|+..+-++.+-.+.-......||++ +.+++ +..+...-+.-....|+-|-|.+.|+...
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~-~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl------ 178 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSW-LAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSL------ 178 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEe-ccCCC---ceeeehhccCCccccccccCcEEEEEccC------
Confidence 578888899999985444443322111123456654 45555 66665444444456899999988877521
Q ss_pred CCceE--EEEEecCCCceeeeEE
Q 008927 271 DKAEL--WVGYISENGDVYKRVC 291 (548)
Q Consensus 271 ~~~~L--~v~~~~~~g~~~~~~~ 291 (548)
+-++ |-+|+. +|.+.+++.
T Consensus 179 -n~~V~a~dyd~~-tG~~snr~~ 199 (310)
T KOG4499|consen 179 -NYEVDAYDYDCP-TGDLSNRKV 199 (310)
T ss_pred -ceEEeeeecCCC-cccccCcce
Confidence 2234 555666 355433333
No 330
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=76.17 E-value=8.1 Score=39.98 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=40.7
Q ss_pred CCeE-EEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCC
Q 008927 471 PGQK-AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534 (548)
Q Consensus 471 dG~~-i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRG 534 (548)
||.+ .--|+..|....+ .+....|+||.+||=..+.....--........+||-|+..|.||
T Consensus 102 DGG~~~lDW~~~~~~~~~--~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 102 DGGTVTLDWVENPDSRCR--TDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred CCCEEEEeeccCcccccC--CCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCC
Confidence 5544 4556666643211 113456999999997766554333344555667899999999999
No 331
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=75.93 E-value=33 Score=33.85 Aligned_cols=107 Identities=11% Similarity=0.049 Sum_probs=60.5
Q ss_pred CeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeE--EEEEEECCCCceEeecCCC
Q 008927 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS--YLGILDDFGHSLSLLDIPF 400 (548)
Q Consensus 323 g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~--~L~~~dl~~g~~~~l~~~~ 400 (548)
.+.+++.+|.++++++.|..+.-+. .-.|.-..+.....| -+++|++.. .+|.. -||.+|..+|+.+.|....
T Consensus 76 KYSHVH~yd~e~~~VrLLWkesih~-~~~WaGEVSdIlYdP---~~D~LLlAR-~DGh~nLGvy~ldr~~g~~~~L~~~p 150 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKESIHD-KTKWAGEVSDILYDP---YEDRLLLAR-ADGHANLGVYSLDRRTGKAEKLSSNP 150 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecccCC-ccccccchhheeeCC---CcCEEEEEe-cCCcceeeeEEEcccCCceeeccCCC
Confidence 3567888998888888887542221 235655555444433 467777654 45544 4677788899999886421
Q ss_pred ceeEeeeecCCEEEEEEec-CCCCCeEEEEEcCCCce
Q 008927 401 TDIDNITLGNDCLFVEGAS-GVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 401 ~~~~~~s~d~~~l~~~~ss-~~~p~~l~~~d~~~~~~ 436 (548)
.. .+.-.. +..+|.... ...-..|..+|+.+++.
T Consensus 151 s~-KG~~~~-D~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 151 SL-KGTLVH-DYACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred Cc-CceEee-eeEEEeccccccCCceEEEEEccCCeE
Confidence 11 000011 112232221 23456788888877764
No 332
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=75.86 E-value=31 Score=31.60 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=56.5
Q ss_pred CCCCCEEEEEEecCCCCCCC-CceEEEEEecCCCceeeeEE-EcCCCCCcccCCcCceECcCCcEEEE-EeC-C--CCee
Q 008927 252 DPRGERMAWIEWHHPNMPWD-KAELWVGYISENGDVYKRVC-VAGFDPTIVESPTEPKWSSKGELFFV-TDR-K--NGFW 325 (548)
Q Consensus 252 SPDGk~La~~~~~~~~~p~~-~~~L~v~~~~~~g~~~~~~~-l~~~~~~~~~~~~~~~wspDG~L~~~-sd~-~--~g~~ 325 (548)
|-+|++-|++.-..++..|. -.+||+.++.. +.+ .++ +...+.. ...-...|.-|..|+++ ... + +...
T Consensus 66 s~~~~~saciegkg~~a~eEgiGkIYIkn~~~-~~~--~~L~i~~~~~k--~sPK~i~WiDD~~L~vIIG~a~GTvS~GG 140 (200)
T PF15525_consen 66 SENGKYSACIEGKGPEAEEEGIGKIYIKNLNN-NNW--WSLQIDQNEEK--YSPKYIEWIDDNNLAVIIGYAHGTVSKGG 140 (200)
T ss_pred ccCCceeEEEEcCCCccccccceeEEEEecCC-Cce--EEEEecCcccc--cCCceeEEecCCcEEEEEccccceEccCC
Confidence 67899999998666666674 57999999984 543 223 3222101 23345689877775554 322 1 2235
Q ss_pred eEEEEeccCCeeEeecc
Q 008927 326 NLHKWIESNNEVLAIYS 342 (548)
Q Consensus 326 ~Ly~~d~~~g~~~~l~~ 342 (548)
+||.+++.+|+...|++
T Consensus 141 nLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 141 NLYKYNLNTGNLTELYE 157 (200)
T ss_pred eEEEEEccCCceeEeee
Confidence 89999999999998874
No 333
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=75.17 E-value=3.6 Score=42.75 Aligned_cols=37 Identities=14% Similarity=0.271 Sum_probs=28.9
Q ss_pred cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
|.||++||.|.... .|...+..|+ .+|.|+.+|.+|-
T Consensus 128 ~~ivllHG~~~~~~--~w~~~~~~L~-~~~~Via~DlpG~ 164 (383)
T PLN03084 128 PPVLLIHGFPSQAY--SYRKVLPVLS-KNYHAIAFDWLGF 164 (383)
T ss_pred CeEEEECCCCCCHH--HHHHHHHHHh-cCCEEEEECCCCC
Confidence 78999999986554 4555566675 5899999999985
No 334
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=74.87 E-value=67 Score=34.93 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=31.7
Q ss_pred eECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec--ccccccCCCcccccCcceeeeeecCCCCEEEEEE
Q 008927 307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY 375 (548)
Q Consensus 307 ~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~--~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~ 375 (548)
...++|+++.+... .|.. +...+...++++++. +..+|+..+.| .| |++.|++..
T Consensus 464 g~t~~G~~~~~~~~-~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~f---------sp---Dg~tlFvni 520 (524)
T PF05787_consen 464 GVTPDGEVYDFARN-DGNN-VWAYDPDTGELKRFLVGPNGAEITGPCF---------SP---DGRTLFVNI 520 (524)
T ss_pred cccccCceeeeeec-ccce-eeeccccccceeeeccCCCCcccccceE---------CC---CCCEEEEEE
Confidence 34566664444332 3434 666777788887765 34556655543 33 777776544
No 335
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=74.74 E-value=73 Score=35.43 Aligned_cols=153 Identities=12% Similarity=0.055 Sum_probs=76.7
Q ss_pred eeEEECCEEEEEeCCCC--eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927 149 AFRIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~--~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i 226 (548)
+++...+.++-.+...+ -||-.+.. ...|.++.. +-.. -.|-|.++.|+.- .+. ..|-++
T Consensus 378 sl~vS~d~~~~~Sga~~SikiWn~~t~---kciRTi~~~-----y~l~-~~Fvpgd~~Iv~G-~k~--------Gel~vf 439 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAGESIKIWNRDTL---KCIRTITCG-----YILA-SKFVPGDRYIVLG-TKN--------GELQVF 439 (888)
T ss_pred EEEeecCceeeeecCCCcEEEEEccCc---ceeEEeccc-----cEEE-EEecCCCceEEEe-ccC--------CceEEE
Confidence 45555554444443333 45655432 456777764 2222 3577876665553 222 357778
Q ss_pred ECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceee------eEEEcCCCCCcc
Q 008927 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK------RVCVAGFDPTIV 300 (548)
Q Consensus 227 dl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~------~~~l~~~~~~~~ 300 (548)
|+.+... ...+....+.......+||++..+-.+.++.-.-|+ --++.+. +|.-+. .+.+.-.
T Consensus 440 dlaS~~l--~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWd--f~l~~~~--~gt~~k~lsl~~~rtLel~----- 508 (888)
T KOG0306|consen 440 DLASASL--VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWD--FKLVVSV--PGTQKKVLSLKHTRTLELE----- 508 (888)
T ss_pred Eeehhhh--hhhhhccccceeeeeecCCCCceEEecCCcEEEEEe--EEEEecc--CcccceeeeeccceEEecc-----
Confidence 8887752 222332334466778999999877444332111121 1112222 232101 1222211
Q ss_pred cCCcCceECcCCcEEEEEeCCCCeeeEEEEe
Q 008927 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWI 331 (548)
Q Consensus 301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d 331 (548)
..+.....||||+++.++=- +..-.+|.+|
T Consensus 509 ddvL~v~~Spdgk~LaVsLL-dnTVkVyflD 538 (888)
T KOG0306|consen 509 DDVLCVSVSPDGKLLAVSLL-DNTVKVYFLD 538 (888)
T ss_pred ccEEEEEEcCCCcEEEEEec-cCeEEEEEec
Confidence 34566789999996665433 3334555543
No 336
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.72 E-value=85 Score=30.36 Aligned_cols=161 Identities=12% Similarity=0.044 Sum_probs=79.0
Q ss_pred eeEECC-CCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCee
Q 008927 248 FPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 325 (548)
Q Consensus 248 ~p~~SP-DGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~ 325 (548)
...||| --.+||.....+-+. -.+..|++.+++..+.+.+.....-. ...+...|++.-+ +++...- +|..
T Consensus 13 svqfSPf~~nrLavAt~q~yGl-~G~G~L~ile~~~~~gi~e~~s~d~~-----D~LfdV~Wse~~e~~~~~a~G-DGSL 85 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGL-AGNGRLFILEVTDPKGIQECQSYDTE-----DGLFDVAWSENHENQVIAASG-DGSL 85 (311)
T ss_pred eeEecccccchhheeehhhccc-ccCceEEEEecCCCCCeEEEEeeecc-----cceeEeeecCCCcceEEEEec-CceE
Confidence 357888 233566544333211 14679999999633334443333332 3578899999877 6655543 6766
Q ss_pred eEEEEeccCCeeEeec--cc-ccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCce
Q 008927 326 NLHKWIESNNEVLAIY--SL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD 402 (548)
Q Consensus 326 ~Ly~~d~~~g~~~~l~--~~-~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~ 402 (548)
+||-..... .+|. ++ +.|+-... |.+ ..+.++.+...++.-.|+.-+.. ..++.......-
T Consensus 86 rl~d~~~~s---~Pi~~~kEH~~EV~Svd---------wn~---~~r~~~ltsSWD~TiKLW~~~r~-~Sv~Tf~gh~~~ 149 (311)
T KOG0277|consen 86 RLFDLTMPS---KPIHKFKEHKREVYSVD---------WNT---VRRRIFLTSSWDGTIKLWDPNRP-NSVQTFNGHNSC 149 (311)
T ss_pred EEeccCCCC---cchhHHHhhhhheEEec---------ccc---ccceeEEeeccCCceEeecCCCC-cceEeecCCccE
Confidence 666532222 2222 11 11221112 222 34556566677888777755432 223333322222
Q ss_pred eEee--eecCCEEEEEEecCCCCCeEEEEEcC
Q 008927 403 IDNI--TLGNDCLFVEGASGVEPSSVAKVTLD 432 (548)
Q Consensus 403 ~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~ 432 (548)
+... ++....++..+++ +..-.||=++..
T Consensus 150 Iy~a~~sp~~~nlfas~Sg-d~~l~lwdvr~~ 180 (311)
T KOG0277|consen 150 IYQAAFSPHIPNLFASASG-DGTLRLWDVRSP 180 (311)
T ss_pred EEEEecCCCCCCeEEEccC-CceEEEEEecCC
Confidence 3332 5544445444433 333445544433
No 337
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=74.27 E-value=90 Score=30.48 Aligned_cols=174 Identities=17% Similarity=0.111 Sum_probs=86.6
Q ss_pred ceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCC
Q 008927 219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT 298 (548)
Q Consensus 219 ~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~ 298 (548)
.++.|..+|+++|+ ...-..-+..+..--+.--+.+|.-+.|. ....+++|.+.- + ....+.-..
T Consensus 66 G~S~l~~~d~~tg~---~~~~~~l~~~~FgEGit~~~d~l~qLTWk-------~~~~f~yd~~tl-~--~~~~~~y~~-- 130 (264)
T PF05096_consen 66 GQSSLRKVDLETGK---VLQSVPLPPRYFGEGITILGDKLYQLTWK-------EGTGFVYDPNTL-K--KIGTFPYPG-- 130 (264)
T ss_dssp TEEEEEEEETTTSS---EEEEEE-TTT--EEEEEEETTEEEEEESS-------SSEEEEEETTTT-E--EEEEEE-SS--
T ss_pred CcEEEEEEECCCCc---EEEEEECCccccceeEEEECCEEEEEEec-------CCeEEEEccccc-e--EEEEEecCC--
Confidence 36899999999998 44333322222111122225667767754 567888888642 2 222221110
Q ss_pred cccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeE-ee--cccccccCCCcccccCcceeeeeecCCCCEEEEEE
Q 008927 299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AI--YSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY 375 (548)
Q Consensus 299 ~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~-~l--~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~ 375 (548)
..-.-..||+.+++|| |...|+.+|+++-+.+ .+ +.. +.|. ...+...+. ++.||+..
T Consensus 131 -----EGWGLt~dg~~Li~SD---GS~~L~~~dP~~f~~~~~i~V~~~----g~pv--~~LNELE~i-----~G~IyANV 191 (264)
T PF05096_consen 131 -----EGWGLTSDGKRLIMSD---GSSRLYFLDPETFKEVRTIQVTDN----GRPV--SNLNELEYI-----NGKIYANV 191 (264)
T ss_dssp -----S--EEEECSSCEEEE----SSSEEEEE-TTT-SEEEEEE-EET----TEE-----EEEEEEE-----TTEEEEEE
T ss_pred -----cceEEEcCCCEEEEEC---CccceEEECCcccceEEEEEEEEC----CEEC--CCcEeEEEE-----cCEEEEEe
Confidence 0011236888555665 3457999998775432 22 211 1111 111223333 35666543
Q ss_pred EeCCeEEEEEEECCCCceEee-cC----------C-----CceeEee--eecCCEEEEEEecCCCCCeEEEEEc
Q 008927 376 RQNGRSYLGILDDFGHSLSLL-DI----------P-----FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTL 431 (548)
Q Consensus 376 ~~~g~~~L~~~dl~~g~~~~l-~~----------~-----~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~ 431 (548)
- ....|.++|+++|++... .. . .....++ .+..+++++++- .-+.+|.+.+
T Consensus 192 W--~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK---~Wp~lyeV~l 260 (264)
T PF05096_consen 192 W--QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK---LWPKLYEVKL 260 (264)
T ss_dssp T--TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET---T-SEEEEEEE
T ss_pred C--CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC---CCCceEEEEE
Confidence 2 356799999999987632 10 0 1224455 456677777653 3457777654
No 338
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=73.58 E-value=1.1e+02 Score=31.07 Aligned_cols=170 Identities=15% Similarity=0.158 Sum_probs=74.3
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCC---CCCCCceecceeeCCC---CCEEEEEEeccC-CCCCCcee
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPD---YGEPLVSYADGIFDPR---FNRYVTVREDRR-QDALNSTT 221 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~---~~~~~~~~~~~~~SpD---G~~i~~v~~~~~-~~~~~~~~ 221 (548)
+|.|+| +|+. .++.+.|++++.++ .....+... .........+++++|+ ..+| |+..... .......+
T Consensus 8 a~~pdG-~l~v-~e~~G~i~~~~~~g--~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~l-Yv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 8 AFLPDG-RLLV-AERSGRIWVVDKDG--SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYL-YVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEETTS-CEEE-EETTTEEEEEETTT--EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EE-EEEEEEE-TSSSSEEE
T ss_pred EEeCCC-cEEE-EeCCceEEEEeCCC--cCcceecccccccccccCCcccceeccccCCCCEE-EEEEEcccCCCCCcce
Confidence 455564 4544 44589999999654 221222111 0001223456678884 2333 3322211 11122456
Q ss_pred EEEEEECCCC--CccCcEEeeec-C------CceeeeEECCCCCEEEEEEecCCC------CCCCCceEEEEEecCCCce
Q 008927 222 EIVAIALNGQ--NIQEPKVLVSG-S------DFYAFPRMDPRGERMAWIEWHHPN------MPWDKAELWVGYISENGDV 286 (548)
Q Consensus 222 ~l~~idl~~g--~~~~~~~L~~~-~------~~~~~p~~SPDGk~La~~~~~~~~------~p~~~~~L~v~~~~~~g~~ 286 (548)
.|+++.+..+ .....+.|... + ..-....|.||| +|.+..-+..+ ..-....|..++.+ |++
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d--G~~ 159 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPD--GSI 159 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETT--SSB
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEeccc--CcC
Confidence 7888777655 11112333211 1 122457899999 45433322211 01123466666654 431
Q ss_pred e-----------eeEEEcCCCCCcccCCcCceECcC-CcEEEEEeCCCCeeeEEEE
Q 008927 287 Y-----------KRVCVAGFDPTIVESPTEPKWSSK-GELFFVTDRKNGFWNLHKW 330 (548)
Q Consensus 287 ~-----------~~~~l~~~~~~~~~~~~~~~wspD-G~L~~~sd~~~g~~~Ly~~ 330 (548)
- ...+.+.+- .....+.|.|. |+||....-..+..+|.++
T Consensus 160 p~dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i 211 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRI 211 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE
T ss_pred CCCCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEe
Confidence 0 011122111 23456788888 7666543221334455554
No 339
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=72.42 E-value=3.9 Score=46.17 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=30.6
Q ss_pred CCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 494 ~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
..|+||++||=.... ..|....+.|+.+||.|+.+|+||-
T Consensus 448 g~P~VVllHG~~g~~--~~~~~lA~~La~~Gy~VIaiDlpGH 487 (792)
T TIGR03502 448 GWPVVIYQHGITGAK--ENALAFAGTLAAAGVATIAIDHPLH 487 (792)
T ss_pred CCcEEEEeCCCCCCH--HHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 358999999954332 2355667889999999999999864
No 340
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=72.29 E-value=1.2e+02 Score=31.06 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=21.3
Q ss_pred CCcCceECcCCcEEEEEeCCCCeeeEEEEe
Q 008927 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWI 331 (548)
Q Consensus 302 ~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d 331 (548)
.+.+..||||+++++.+|| .+.-.+-+++
T Consensus 153 ml~dVavS~D~~~IitaDR-DEkIRvs~yp 181 (390)
T KOG3914|consen 153 MLLDVAVSPDDQFIITADR-DEKIRVSRYP 181 (390)
T ss_pred hhheeeecCCCCEEEEecC-CceEEEEecC
Confidence 3578899999998889999 5544444443
No 341
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=72.17 E-value=6.8 Score=41.87 Aligned_cols=63 Identities=19% Similarity=0.337 Sum_probs=42.1
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccC----------------hHHHHHHhcCcEEEEeCCCCC
Q 008927 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN----------------LSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 472 G~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~----------------~~~Q~~asrGyaVl~~NyRGS 535 (548)
+..++-|++...+ + .+..|+|++++|||......++. ....-|...+..|+.=+++|
T Consensus 60 ~~~lFyw~~~s~~-~-----~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~iDqP~G- 132 (462)
T PTZ00472 60 DKHYFYWAFGPRN-G-----NPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEAYVIYVDQPAG- 132 (462)
T ss_pred CceEEEEEEEcCC-C-----CCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccccCeEEEeCCCC-
Confidence 4567888887653 1 24569999999999876544321 12335777776666666888
Q ss_pred CCCChh
Q 008927 536 TGLSSV 541 (548)
Q Consensus 536 tGyG~~ 541 (548)
+||...
T Consensus 133 ~G~S~~ 138 (462)
T PTZ00472 133 VGFSYA 138 (462)
T ss_pred cCcccC
Confidence 787653
No 342
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=71.92 E-value=1.5e+02 Score=31.92 Aligned_cols=137 Identities=9% Similarity=0.048 Sum_probs=72.9
Q ss_pred CCCeEEEEeCCCCCCCce-ecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeee
Q 008927 163 KDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS 241 (548)
Q Consensus 163 ~~~~Ly~~~~~~~~~~~~-~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~ 241 (548)
..+.++.++..+ ++.+ .++.+. ...+.....|+.+-. ++|.... ...+..++...+. ..++..
T Consensus 78 ~~g~v~~ys~~~--g~it~~~st~~--h~~~v~~~~~~~~~~-ciyS~~a--------d~~v~~~~~~~~~---~~~~~~ 141 (541)
T KOG4547|consen 78 PQGSVLLYSVAG--GEITAKLSTDK--HYGNVNEILDAQRLG-CIYSVGA--------DLKVVYILEKEKV---IIRIWK 141 (541)
T ss_pred CCccEEEEEecC--CeEEEEEecCC--CCCcceeeecccccC-ceEecCC--------ceeEEEEecccce---eeeeec
Confidence 456788888877 5553 454331 112222223343333 3443221 2467777877776 444433
Q ss_pred -cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcC--Cc--EEE
Q 008927 242 -GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK--GE--LFF 316 (548)
Q Consensus 242 -~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspD--G~--L~~ 316 (548)
....+....++|||+.|+ ++ ..+|-+++++. +++ .+.+++.. ..+....|.-+ |. .+|
T Consensus 142 ~~~~~~~sl~is~D~~~l~-~a---------s~~ik~~~~~~-kev--v~~ftgh~----s~v~t~~f~~~~~g~~G~~v 204 (541)
T KOG4547|consen 142 EQKPLVSSLCISPDGKILL-TA---------SRQIKVLDIET-KEV--VITFTGHG----SPVRTLSFTTLIDGIIGKYV 204 (541)
T ss_pred cCCCccceEEEcCCCCEEE-ec---------cceEEEEEccC-ceE--EEEecCCC----cceEEEEEEEecccccccee
Confidence 334577889999999876 43 35788999984 542 44555543 33444555433 33 444
Q ss_pred EE-eCCCCeeeEEEEec
Q 008927 317 VT-DRKNGFWNLHKWIE 332 (548)
Q Consensus 317 ~s-d~~~g~~~Ly~~d~ 332 (548)
++ +...-.-.++..+-
T Consensus 205 Lssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 205 LSSAAAERGITVWVVEK 221 (541)
T ss_pred eeccccccceeEEEEEc
Confidence 43 22122234555554
No 343
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=71.80 E-value=61 Score=34.19 Aligned_cols=71 Identities=17% Similarity=0.139 Sum_probs=49.5
Q ss_pred CeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (548)
Q Consensus 147 g~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i 226 (548)
|.+|+|....|+-+-.-|..|+.+|.... .....|+-. .-+...+|+++|-.|+.-. .+..|+.+
T Consensus 213 gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~l~y~-----~Plstvaf~~~G~~L~aG~---------s~G~~i~Y 277 (673)
T KOG4378|consen 213 GICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDRLTYS-----HPLSTVAFSECGTYLCAGN---------SKGELIAY 277 (673)
T ss_pred cceecCCccceEEEecccceEEEeecccc-cccceeeec-----CCcceeeecCCceEEEeec---------CCceEEEE
Confidence 56888988887777666789999998642 233455543 2356678999997765532 24579999
Q ss_pred ECCCCC
Q 008927 227 ALNGQN 232 (548)
Q Consensus 227 dl~~g~ 232 (548)
|+.+.+
T Consensus 278 D~R~~k 283 (673)
T KOG4378|consen 278 DMRSTK 283 (673)
T ss_pred ecccCC
Confidence 998865
No 344
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=71.79 E-value=1.1e+02 Score=30.40 Aligned_cols=110 Identities=19% Similarity=0.284 Sum_probs=61.0
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCc-cCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCC
Q 008927 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (548)
Q Consensus 193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~-~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~ 271 (548)
+.++.|.|....|+--+.+ +.|-..|...... .+.+.+ +....+....+.|.|..|+ +..+||
T Consensus 175 vn~l~FHPre~ILiS~srD---------~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefll-vgTdHp----- 238 (430)
T KOG0640|consen 175 VNDLDFHPRETILISGSRD---------NTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLL-VGTDHP----- 238 (430)
T ss_pred ccceeecchhheEEeccCC---------CeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEE-EecCCC-----
Confidence 3456678865543332211 3466666654320 001222 2333456678999999887 554654
Q ss_pred CceEEEEEecCCCceeeeEEEcC-CC-CCcccCCcCceECcCCcEEEEEeCCCCeeeE
Q 008927 272 KAELWVGYISENGDVYKRVCVAG-FD-PTIVESPTEPKWSSKGELFFVTDRKNGFWNL 327 (548)
Q Consensus 272 ~~~L~v~~~~~~g~~~~~~~l~~-~~-~~~~~~~~~~~wspDG~L~~~sd~~~g~~~L 327 (548)
-+.++|++.- ++... .+ .+..+.+.+..+|+.|+||+.... +|.-.|
T Consensus 239 --~~rlYdv~T~------QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk-DG~Ikl 287 (430)
T KOG0640|consen 239 --TLRLYDVNTY------QCFVSANPDDQHTGAITQVRYSSTGSLYVTASK-DGAIKL 287 (430)
T ss_pred --ceeEEeccce------eEeeecCcccccccceeEEEecCCccEEEEecc-CCcEEe
Confidence 4677787641 22211 11 011146788999999999988776 664444
No 345
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=69.57 E-value=5.9 Score=41.10 Aligned_cols=40 Identities=8% Similarity=-0.112 Sum_probs=27.2
Q ss_pred CcEEEEEccCccccccCcc---------ChHHH-----HHHhcCcEEEEeCCCC
Q 008927 495 PPLLVKSHGGPTSEARGIL---------NLSIQ-----YWTSRGWAFVDVNYGG 534 (548)
Q Consensus 495 ~Pliv~iHGGP~~~~~~~~---------~~~~Q-----~~asrGyaVl~~NyRG 534 (548)
.|.||++||-+........ .|..+ .+-..+|-|+.+|.+|
T Consensus 48 ~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G 101 (379)
T PRK00175 48 SNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLG 101 (379)
T ss_pred CCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCC
Confidence 4889999999987653210 12222 2336799999999988
No 346
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=68.92 E-value=90 Score=34.81 Aligned_cols=154 Identities=12% Similarity=0.081 Sum_probs=88.0
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (548)
Q Consensus 150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~ 229 (548)
|....-.|+.+..+|+-+-..|+.. ..-+..+.. ....+.|..|||.-...++...+. ..|-++|+.
T Consensus 141 fh~tep~iliSGSQDg~vK~~DlR~--~~S~~t~~~---nSESiRDV~fsp~~~~~F~s~~ds--------G~lqlWDlR 207 (839)
T KOG0269|consen 141 FHSTEPNILISGSQDGTVKCWDLRS--KKSKSTFRS---NSESIRDVKFSPGYGNKFASIHDS--------GYLQLWDLR 207 (839)
T ss_pred eccCCccEEEecCCCceEEEEeeec--ccccccccc---cchhhhceeeccCCCceEEEecCC--------ceEEEeecc
Confidence 4344446777777788777777764 333333332 123466888999544333322222 357777887
Q ss_pred CCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceEC
Q 008927 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (548)
Q Consensus 230 ~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ws 309 (548)
.-. +-..+++...+++.-..|+|++.+||--. + ...+.+.++.+ +......++... ..+....|-
T Consensus 208 qp~-r~~~k~~AH~GpV~c~nwhPnr~~lATGG---R-----DK~vkiWd~t~-~~~~~~~tInTi-----apv~rVkWR 272 (839)
T KOG0269|consen 208 QPD-RCEKKLTAHNGPVLCLNWHPNREWLATGG---R-----DKMVKIWDMTD-SRAKPKHTINTI-----APVGRVKWR 272 (839)
T ss_pred Cch-hHHHHhhcccCceEEEeecCCCceeeecC---C-----CccEEEEeccC-CCccceeEEeec-----ceeeeeeec
Confidence 643 11345666666777778999999888322 1 12344445542 332223333321 457788999
Q ss_pred cCCc-EEEEEeCCCCeeeEEEEec
Q 008927 310 SKGE-LFFVTDRKNGFWNLHKWIE 332 (548)
Q Consensus 310 pDG~-L~~~sd~~~g~~~Ly~~d~ 332 (548)
|+-. .+..+.. -+...++++|+
T Consensus 273 P~~~~hLAtcsm-v~dtsV~VWDv 295 (839)
T KOG0269|consen 273 PARSYHLATCSM-VVDTSVHVWDV 295 (839)
T ss_pred cCccchhhhhhc-cccceEEEEee
Confidence 9987 5555444 45567888887
No 347
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=68.89 E-value=1.3e+02 Score=31.92 Aligned_cols=112 Identities=12% Similarity=0.103 Sum_probs=54.6
Q ss_pred ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEe-------ee-cCCceeeeEECCCC-----CEEEEE
Q 008927 195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL-------VS-GSDFYAFPRMDPRG-----ERMAWI 261 (548)
Q Consensus 195 ~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L-------~~-~~~~~~~p~~SPDG-----k~La~~ 261 (548)
.+.|.|||+. ++ .|.. ...|++++..++. .+.+ .. +.+-....+++||- ...+|+
T Consensus 34 ~maflPDG~l-lV-tER~-------~G~I~~v~~~~~~---~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYv 101 (454)
T TIGR03606 34 ALLWGPDNQL-WV-TERA-------TGKILRVNPETGE---VKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYI 101 (454)
T ss_pred EEEEcCCCeE-EE-EEec-------CCEEEEEeCCCCc---eeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEE
Confidence 4678999853 33 3432 1478888876654 2221 11 22223455677764 234455
Q ss_pred EecCCCCCC---CCceEEEEEecCC-Cceee-eEEEcCCCCCcccCCcCceECcCCcEEEEE
Q 008927 262 EWHHPNMPW---DKAELWVGYISEN-GDVYK-RVCVAGFDPTIVESPTEPKWSSKGELFFVT 318 (548)
Q Consensus 262 ~~~~~~~p~---~~~~L~v~~~~~~-g~~~~-~~~l~~~~~~~~~~~~~~~wspDG~L~~~s 318 (548)
.+....... ....|..+.++.+ ..+.. ..++...+......-..+.|.|||+||+..
T Consensus 102 syt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~ 163 (454)
T TIGR03606 102 SYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTI 163 (454)
T ss_pred EEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEE
Confidence 543221100 1356766666421 12211 233333210000224568899999988753
No 348
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=68.68 E-value=1.7e+02 Score=31.41 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=16.4
Q ss_pred CCCEEEEEEEeCCeEEEEEEECCCCceE
Q 008927 367 EKNLIACSYRQNGRSYLGILDDFGHSLS 394 (548)
Q Consensus 367 d~~~l~~~~~~~g~~~L~~~dl~~g~~~ 394 (548)
.++.|++.. .+ ..|+.+|.++|++.
T Consensus 405 ~g~~v~~g~-~d--G~l~ald~~tG~~l 429 (488)
T cd00216 405 AGNLVFAGA-AD--GYFRAFDATTGKEL 429 (488)
T ss_pred cCCeEEEEC-CC--CeEEEEECCCCcee
Confidence 455555433 33 46999999999754
No 349
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=67.71 E-value=1.1e+02 Score=28.84 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=64.2
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCC
Q 008927 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (548)
Q Consensus 193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~ 272 (548)
++....+|.|+.|+--.++ ....++|+.++.. .++......-+...+|||-..+|.-.++ .
T Consensus 234 vaav~vdpsgrll~sg~~d---------ssc~lydirg~r~--iq~f~phsadir~vrfsp~a~yllt~sy--------d 294 (350)
T KOG0641|consen 234 VAAVAVDPSGRLLASGHAD---------SSCMLYDIRGGRM--IQRFHPHSADIRCVRFSPGAHYLLTCSY--------D 294 (350)
T ss_pred eEEEEECCCcceeeeccCC---------CceEEEEeeCCce--eeeeCCCccceeEEEeCCCceEEEEecc--------c
Confidence 4456788888765442222 4566778888871 2333333333567789998777664442 3
Q ss_pred ceEEEEEecCCCceee--eEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEE
Q 008927 273 AELWVGYISENGDVYK--RVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKW 330 (548)
Q Consensus 273 ~~L~v~~~~~~g~~~~--~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~ 330 (548)
..|-+.|+.++=. .+ ..++.... ...-+.+|.|.. +-|++...+....||.+
T Consensus 295 ~~ikltdlqgdla-~el~~~vv~ehk----dk~i~~rwh~~d-~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 295 MKIKLTDLQGDLA-HELPIMVVAEHK----DKAIQCRWHPQD-FSFISSSADKTATLWAL 348 (350)
T ss_pred ceEEEeecccchh-hcCceEEEEecc----CceEEEEecCcc-ceeeeccCcceEEEecc
Confidence 5688888863211 11 22333322 335578999865 66665442334456654
No 350
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=67.51 E-value=1.3e+02 Score=29.66 Aligned_cols=57 Identities=9% Similarity=0.060 Sum_probs=37.4
Q ss_pred eeeCCCC--CEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEE
Q 008927 196 GIFDPRF--NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE 262 (548)
Q Consensus 196 ~~~SpDG--~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~ 262 (548)
-.|||-. ..|+.+..+ ..++-+.|+.+|.. ...|....+.+....|||...++.+..
T Consensus 149 hamSp~a~sHcLiA~gtr--------~~~VrLCDi~SGs~--sH~LsGHr~~vlaV~Wsp~~e~vLatg 207 (397)
T KOG4283|consen 149 HAMSPMAMSHCLIAAGTR--------DVQVRLCDIASGSF--SHTLSGHRDGVLAVEWSPSSEWVLATG 207 (397)
T ss_pred hhcChhhhcceEEEEecC--------CCcEEEEeccCCcc--eeeeccccCceEEEEeccCceeEEEec
Confidence 3578743 345554322 14678889999972 344554455677789999999988765
No 351
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=67.40 E-value=5.1 Score=39.59 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=27.0
Q ss_pred CCcEEEEEccCccccccCccChH-HH-HHHhcCcEEEEeCCCCC
Q 008927 494 KPPLLVKSHGGPTSEARGILNLS-IQ-YWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 494 ~~Pliv~iHGGP~~~~~~~~~~~-~Q-~~asrGyaVl~~NyRGS 535 (548)
..|++|+|||-..... ..|... .. ++...+|.|+.+|++|.
T Consensus 35 ~~p~vilIHG~~~~~~-~~~~~~l~~~ll~~~~~nVi~vD~~~~ 77 (275)
T cd00707 35 SRPTRFIIHGWTSSGE-ESWISDLRKAYLSRGDYNVIVVDWGRG 77 (275)
T ss_pred CCCcEEEEcCCCCCCC-CcHHHHHHHHHHhcCCCEEEEEECccc
Confidence 4589999999654331 223222 23 34456899999999985
No 352
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=67.26 E-value=1.6e+02 Score=30.49 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=46.5
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCC-CCCceecceeeCCCCCEE-EEEEeccCCCCCCceeEEEEEECCCCCc
Q 008927 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG-EPLVSYADGIFDPRFNRY-VTVREDRRQDALNSTTEIVAIALNGQNI 233 (548)
Q Consensus 156 ~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~-~~~~~~~~~~~SpDG~~i-~~v~~~~~~~~~~~~~~l~~idl~~g~~ 233 (548)
.+++.-++.+-|++++++| .+.+.+..+.- +-.+++. +.+ .|+.+ +.+..++.+. ...-.||.||..++.
T Consensus 69 SlIigTdK~~GL~VYdL~G--k~lq~~~~Gr~NNVDvryg-f~l--~g~~vDlavas~R~~g--~n~l~~f~id~~~g~- 140 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDG--KELQSLPVGRPNNVDVRYG-FPL--NGKTVDLAVASDRSDG--RNSLRLFRIDPDTGE- 140 (381)
T ss_dssp -EEEEEETTTEEEEEETTS---EEEEE-SS-EEEEEEEEE-EEE--TTEEEEEEEEEE-CCC--T-EEEEEEEETTTTE-
T ss_pred ceEEEEeCCCCEEEEcCCC--cEEEeecCCCcceeeeecc-eec--CCceEEEEEEecCcCC--CCeEEEEEecCCCCc-
Confidence 5666666778899999998 66677754310 0011221 223 56654 3333333211 123479999987776
Q ss_pred cCcEEeeecC--------CceeeeE-ECC-CCCEEEEEEe
Q 008927 234 QEPKVLVSGS--------DFYAFPR-MDP-RGERMAWIEW 263 (548)
Q Consensus 234 ~~~~~L~~~~--------~~~~~p~-~SP-DGk~La~~~~ 263 (548)
.+.+.... +-|...- -+| +|+..+|+..
T Consensus 141 --L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~ 178 (381)
T PF02333_consen 141 --LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG 178 (381)
T ss_dssp --EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE
T ss_pred --ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec
Confidence 55544221 1122211 244 6787777763
No 353
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=67.01 E-value=48 Score=36.56 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=26.1
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCC--CCCceecCCCCCCCCceecceeeCCCCCEEEEE
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSK--DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTV 208 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~--~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v 208 (548)
+|..||.+|...- +||.+-+=.++|+ .|. .|. ....+...||+|.+.++|-
T Consensus 122 sWn~dG~kIcIvY-eDGavIVGsvdGNRIwgK--eLk------g~~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 122 SWNLDGTKICIVY-EDGAVIVGSVDGNRIWGK--ELK------GQLLAHVLWSEDLEQALFK 174 (1189)
T ss_pred EEcCCCcEEEEEE-ccCCEEEEeeccceecch--hcc------hheccceeecccHHHHHhh
Confidence 5666776543321 3455555555542 010 110 0123345799998887774
No 354
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=65.71 E-value=2.1e+02 Score=31.21 Aligned_cols=112 Identities=16% Similarity=0.071 Sum_probs=55.6
Q ss_pred CCcCceECcCCc-EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCe
Q 008927 302 SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (548)
Q Consensus 302 ~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~ 380 (548)
.+.+..|..+|. |..+.-. ++...++..++...+.+ .+....-+.++. ..|-| ..-.+ |.++ .
T Consensus 523 ~i~~vtWHrkGDYlatV~~~-~~~~~VliHQLSK~~sQ--~PF~kskG~vq~------v~FHP---s~p~l-fVaT---q 586 (733)
T KOG0650|consen 523 SIRQVTWHRKGDYLATVMPD-SGNKSVLIHQLSKRKSQ--SPFRKSKGLVQR------VKFHP---SKPYL-FVAT---Q 586 (733)
T ss_pred ccceeeeecCCceEEEeccC-CCcceEEEEeccccccc--CchhhcCCceeE------EEecC---CCceE-EEEe---c
Confidence 567788999998 6666544 56667777777443332 111111122221 11221 22233 3333 2
Q ss_pred EEEEEEECCCCce-EeecCCCceeEee--eecCCEEEEEEecCCCCCeEEEEEcCC
Q 008927 381 SYLGILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDD 433 (548)
Q Consensus 381 ~~L~~~dl~~g~~-~~l~~~~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~ 433 (548)
..+.++|+...++ +.|...--.++.+ .+.|+.|++... -..+..+|++-
T Consensus 587 ~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~----d~k~~WfDldl 638 (733)
T KOG0650|consen 587 RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY----DKKMCWFDLDL 638 (733)
T ss_pred cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC----CCeeEEEEccc
Confidence 3466778765543 2333332345555 456676655432 24566667653
No 355
>PLN02193 nitrile-specifier protein
Probab=65.09 E-value=2e+02 Score=30.79 Aligned_cols=149 Identities=7% Similarity=0.031 Sum_probs=74.2
Q ss_pred CceEEEEEecCCCceeeeEEEcCC---CCCcccCCcCceECcCCcEEEEEeC--CCCeeeEEEEeccCCeeEeecccccc
Q 008927 272 KAELWVGYISENGDVYKRVCVAGF---DPTIVESPTEPKWSSKGELFFVTDR--KNGFWNLHKWIESNNEVLAIYSLDAE 346 (548)
Q Consensus 272 ~~~L~v~~~~~~g~~~~~~~l~~~---~~~~~~~~~~~~wspDG~L~~~sd~--~~g~~~Ly~~d~~~g~~~~l~~~~~d 346 (548)
..++|++|+.. .++. .+... + . .........-+++||++.-. ......++.+|+.+.+...+.... .
T Consensus 243 ~ndv~~yD~~t-~~W~---~l~~~~~~P-~--~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~-~ 314 (470)
T PLN02193 243 YNGFYSFDTTT-NEWK---LLTPVEEGP-T--PRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPG-D 314 (470)
T ss_pred CccEEEEECCC-CEEE---EcCcCCCCC-C--CccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCC-C
Confidence 35799999874 4443 23221 1 0 11111122345667776322 122346889999888877664211 0
Q ss_pred cCCCcccccCcceeeeeecCCCCEEEEEEEeCC--eEEEEEEECCCCceEeecC----CCce-eEeeeecCCEEEEEEec
Q 008927 347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG--RSYLGILDDFGHSLSLLDI----PFTD-IDNITLGNDCLFVEGAS 419 (548)
Q Consensus 347 ~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g--~~~L~~~dl~~g~~~~l~~----~~~~-~~~~s~d~~~l~~~~ss 419 (548)
...+.. + ...... + +.||+..-.++ ...++++|+++.+++++.. |... ......-++.|++.+..
T Consensus 315 ~~~~R~--~-~~~~~~----~-gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 315 SFSIRG--G-AGLEVV----Q-GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGE 386 (470)
T ss_pred CCCCCC--C-cEEEEE----C-CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCc
Confidence 000110 0 111122 3 34554432222 3578999999999988753 2111 11222335566666543
Q ss_pred CC-----------CCCeEEEEEcCCCce
Q 008927 420 GV-----------EPSSVAKVTLDDHKL 436 (548)
Q Consensus 420 ~~-----------~p~~l~~~d~~~~~~ 436 (548)
.. ...+++.+|+.+.+.
T Consensus 387 ~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 387 IAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred cCCccccccCccceeccEEEEEcCcCEE
Confidence 21 124688898877764
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=65.02 E-value=1.9e+02 Score=30.65 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=26.5
Q ss_pred EEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEec
Q 008927 222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS 281 (548)
Q Consensus 222 ~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~ 281 (548)
.|..+|.++++. .+.+.-. . +....||+||+.+|++. ...+|+++.+
T Consensus 127 ~i~~yDw~~~~~--i~~i~v~-~-vk~V~Ws~~g~~val~t---------~~~i~il~~~ 173 (443)
T PF04053_consen 127 FICFYDWETGKL--IRRIDVS-A-VKYVIWSDDGELVALVT---------KDSIYILKYN 173 (443)
T ss_dssp EEEEE-TTT--E--EEEESS--E--EEEEE-TTSSEEEEE----------S-SEEEEEE-
T ss_pred CEEEEEhhHcce--eeEEecC-C-CcEEEEECCCCEEEEEe---------CCeEEEEEec
Confidence 599999998872 3334322 1 34568999999999876 2357777654
No 357
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=64.44 E-value=1.2e+02 Score=30.24 Aligned_cols=118 Identities=16% Similarity=0.179 Sum_probs=59.4
Q ss_pred ceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCC
Q 008927 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (548)
Q Consensus 191 ~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~ 270 (548)
..+....|+|...+|+-...++ ...+|... ++++..+.-.|..-+.......|||.+.++|.-+ .
T Consensus 56 ~~vtgvdWap~snrIvtcs~dr-------nayVw~~~-~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgS-g------ 120 (361)
T KOG1523|consen 56 KIVTGVDWAPKSNRIVTCSHDR-------NAYVWTQP-SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGS-G------ 120 (361)
T ss_pred cceeEEeecCCCCceeEccCCC-------CccccccC-CCCeeccceeEEEeccceeeEeecCcCceEEecc-C------
Confidence 3455678999999988764443 23455442 3433222233444444556778999999888433 1
Q ss_pred CCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEE
Q 008927 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 328 (548)
Q Consensus 271 ~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly 328 (548)
..-+-|.-.+....+-.-+.+ ..+.+ ..+..+.|.|++-|+..... ++...+|
T Consensus 121 -ar~isVcy~E~ENdWWVsKhi-kkPir--Stv~sldWhpnnVLlaaGs~-D~k~rVf 173 (361)
T KOG1523|consen 121 -ARLISVCYYEQENDWWVSKHI-KKPIR--STVTSLDWHPNNVLLAAGST-DGKCRVF 173 (361)
T ss_pred -ccEEEEEEEecccceehhhhh-CCccc--cceeeeeccCCcceeccccc-CcceeEE
Confidence 122333333321111000111 11101 34677899999865444322 3444443
No 358
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=63.49 E-value=16 Score=39.62 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=41.9
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEE
Q 008927 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMA 259 (548)
Q Consensus 192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La 259 (548)
.+.+..+-|||..++.... +.|+++|...|.. .+.|....|.+.-.+||.||++.|
T Consensus 14 ci~d~afkPDGsqL~lAAg----------~rlliyD~ndG~l--lqtLKgHKDtVycVAys~dGkrFA 69 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG----------SRLLVYDTSDGTL--LQPLKGHKDTVYCVAYAKDGKRFA 69 (1081)
T ss_pred chheeEECCCCceEEEecC----------CEEEEEeCCCccc--ccccccccceEEEEEEccCCceec
Confidence 4567889999999876432 4699999987752 556665666666778999999866
No 359
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=63.25 E-value=2.3e+02 Score=30.88 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=31.4
Q ss_pred ceeEEEEEECCCCCccCcEEeeec---C--Cc--eeeeE---ECCCCC--EEEEEEecCCCCCCCCceEEEEEecCCCc
Q 008927 219 STTEIVAIALNGQNIQEPKVLVSG---S--DF--YAFPR---MDPRGE--RMAWIEWHHPNMPWDKAELWVGYISENGD 285 (548)
Q Consensus 219 ~~~~l~~idl~~g~~~~~~~L~~~---~--~~--~~~p~---~SPDGk--~La~~~~~~~~~p~~~~~L~v~~~~~~g~ 285 (548)
..+.|+.+|++||+ .+-..+. + |+ ...|. +-.||+ .++... . ....+|++|..+ |+
T Consensus 269 ~~~s~vAld~~TG~---~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~-~------K~G~~~vlDr~t-G~ 336 (527)
T TIGR03075 269 YTSSIVARDPDTGK---IKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHA-D------RNGFFYVLDRTN-GK 336 (527)
T ss_pred cceeEEEEccccCC---EEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEe-C------CCceEEEEECCC-Cc
Confidence 35689999999998 5433322 1 11 12222 235777 333222 2 245788888874 55
No 360
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=62.96 E-value=9.5 Score=34.01 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=31.7
Q ss_pred CCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCC
Q 008927 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY 532 (548)
Q Consensus 492 ~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~Ny 532 (548)
+..+-+||+.||--.+++.+..-.....||.+|+.|..-|+
T Consensus 11 g~~~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfef 51 (213)
T COG3571 11 GPAPVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEF 51 (213)
T ss_pred CCCCEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeec
Confidence 44567889999987767666555556789999999998875
No 361
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=62.29 E-value=33 Score=37.62 Aligned_cols=99 Identities=12% Similarity=0.025 Sum_probs=58.4
Q ss_pred eEEEEEECCCCCccCcEEeeec--CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCC
Q 008927 221 TEIVAIALNGQNIQEPKVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT 298 (548)
Q Consensus 221 ~~l~~idl~~g~~~~~~~L~~~--~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~ 298 (548)
..||..+..+|+ .+.+..+ ......-.+|++...+|+.. ....+-++-+...+. .+...++..+..
T Consensus 55 G~lyl~~R~~~~---~~~~~~~~~~~~~~~~~vs~~e~lvAagt--------~~g~V~v~ql~~~~p-~~~~~~t~~d~~ 122 (726)
T KOG3621|consen 55 GSVYLYNRHTGE---MRKLKNEGATGITCVRSVSSVEYLVAAGT--------ASGRVSVFQLNKELP-RDLDYVTPCDKS 122 (726)
T ss_pred ceEEEEecCchh---hhcccccCccceEEEEEecchhHhhhhhc--------CCceEEeehhhccCC-Ccceeecccccc
Confidence 578999988887 6666642 22344556777766665433 234555555543222 122334433310
Q ss_pred cccCCcCceECcCCcEEEEEeCCCCeeeEEEEec
Q 008927 299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE 332 (548)
Q Consensus 299 ~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~ 332 (548)
....+....|++||+-+|..|. .|.-.+..+|.
T Consensus 123 ~~~rVTal~Ws~~~~k~ysGD~-~Gkv~~~~L~s 155 (726)
T KOG3621|consen 123 HKCRVTALEWSKNGMKLYSGDS-QGKVVLTELDS 155 (726)
T ss_pred CCceEEEEEecccccEEeecCC-CceEEEEEech
Confidence 0146788999999996677777 77666666654
No 362
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=61.68 E-value=17 Score=23.73 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=24.1
Q ss_pred CeeeEEECCEEEEEeCCCCeEEEEeCCC
Q 008927 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDS 174 (548)
Q Consensus 147 g~~~~~~~~~i~F~~~~~~~Ly~~~~~~ 174 (548)
+.+|.+.++.|||++...+.|++.+++|
T Consensus 13 ~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 13 GLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred EEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 3577888899999998888999999986
No 363
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=61.36 E-value=2e+02 Score=29.50 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=61.7
Q ss_pred ceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC-ceeeeEECCCCCE
Q 008927 179 PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD-FYAFPRMDPRGER 257 (548)
Q Consensus 179 ~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~-~~~~p~~SPDGk~ 257 (548)
.++++.. ...+.++.|||.-+.+++.+.-. ..|-++|+..+.. ....++...+ -+.-..|+.+-..
T Consensus 250 ~~Pf~gH----~~SVEDLqWSptE~~vfaScS~D--------gsIrIWDiRs~~~-~~~~~~kAh~sDVNVISWnr~~~l 316 (440)
T KOG0302|consen 250 QRPFTGH----TKSVEDLQWSPTEDGVFASCSCD--------GSIRIWDIRSGPK-KAAVSTKAHNSDVNVISWNRREPL 316 (440)
T ss_pred Ccccccc----ccchhhhccCCccCceEEeeecC--------ceEEEEEecCCCc-cceeEeeccCCceeeEEccCCcce
Confidence 3455543 23567899999988888876532 3577778887731 1333332211 2334467655443
Q ss_pred EEEEEecCCCCCCCCceEEEEEecC--CCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEE
Q 008927 258 MAWIEWHHPNMPWDKAELWVGYISE--NGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (548)
Q Consensus 258 La~~~~~~~~~p~~~~~L~v~~~~~--~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~s 318 (548)
||. .. +...+-+.|+.. .+. .+..+.-.. ..+....|+|... .+.++
T Consensus 317 Las---G~-----DdGt~~iwDLR~~~~~~--pVA~fk~Hk----~pItsieW~p~e~s~iaas 366 (440)
T KOG0302|consen 317 LAS---GG-----DDGTLSIWDLRQFKSGQ--PVATFKYHK----APITSIEWHPHEDSVIAAS 366 (440)
T ss_pred eee---cC-----CCceEEEEEhhhccCCC--cceeEEecc----CCeeEEEeccccCceEEec
Confidence 432 11 245677777753 221 122222222 4578899999866 55554
No 364
>PLN02578 hydrolase
Probab=60.84 E-value=8.9 Score=39.29 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=26.5
Q ss_pred cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537 (548)
Q Consensus 496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG 537 (548)
|.||++||-+... ..|......|+ ++|.|+.+|+||...
T Consensus 87 ~~vvliHG~~~~~--~~w~~~~~~l~-~~~~v~~~D~~G~G~ 125 (354)
T PLN02578 87 LPIVLIHGFGASA--FHWRYNIPELA-KKYKVYALDLLGFGW 125 (354)
T ss_pred CeEEEECCCCCCH--HHHHHHHHHHh-cCCEEEEECCCCCCC
Confidence 4478999976643 22334445554 579999999998544
No 365
>PRK11460 putative hydrolase; Provisional
Probab=60.29 E-value=9.7 Score=36.44 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=29.8
Q ss_pred CCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 492 ~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
++..|+||+.||-..... .|....++|+.+++.+..+.+||-
T Consensus 13 ~~~~~~vIlLHG~G~~~~--~~~~l~~~l~~~~~~~~~i~~~g~ 54 (232)
T PRK11460 13 KPAQQLLLLFHGVGDNPV--AMGEIGSWFAPAFPDALVVSVGGP 54 (232)
T ss_pred CCCCcEEEEEeCCCCChH--HHHHHHHHHHHHCCCCEEECCCCC
Confidence 345699999999754432 355677889888876677777763
No 366
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=59.99 E-value=13 Score=38.07 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=27.3
Q ss_pred CcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCC
Q 008927 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537 (548)
Q Consensus 495 ~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStG 537 (548)
.|.||++||.+.... .|......|. ++|.|+.+|+||-..
T Consensus 131 ~~~vl~~HG~~~~~~--~~~~~~~~l~-~~~~v~~~d~~g~G~ 170 (371)
T PRK14875 131 GTPVVLIHGFGGDLN--NWLFNHAALA-AGRPVIALDLPGHGA 170 (371)
T ss_pred CCeEEEECCCCCccc--hHHHHHHHHh-cCCEEEEEcCCCCCC
Confidence 478999999765433 3334444454 569999999998543
No 367
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=59.26 E-value=2.7e+02 Score=30.34 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=54.3
Q ss_pred eeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEe---------CCeEEEEEEECCCCceEe
Q 008927 325 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ---------NGRSYLGILDDFGHSLSL 395 (548)
Q Consensus 325 ~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~---------~g~~~L~~~dl~~g~~~~ 395 (548)
..|+++++++++++-+... ..|.+.. +.|+.. +-++.|-+.++. .....||++|..-..+-.
T Consensus 248 T~I~kf~~~~~~~~y~~sg----~V~G~ll--nqFsmd---E~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD~~L~~vG~ 318 (521)
T PF09826_consen 248 TTIYKFALDGGKIEYVGSG----SVPGYLL--NQFSMD---EYDGYLRVATTSGNWWWDSEDTSSNNLYVLDEDLKIVGS 318 (521)
T ss_pred eEEEEEEccCCcEEEEEEE----EECcEEc--ccccEe---ccCCEEEEEEecCcccccCCCCceEEEEEECCCCcEeEE
Confidence 5688888887776544321 1122221 123332 234444333332 356789999833222224
Q ss_pred ecC--CCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 396 LDI--PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 396 l~~--~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
|.. +...+.+..--|++.|++.-....| ||.+|+++.+
T Consensus 319 l~~la~gE~IysvRF~Gd~~Y~VTFrqvDP--LfviDLsdP~ 358 (521)
T PF09826_consen 319 LEGLAPGERIYSVRFMGDRAYLVTFRQVDP--LFVIDLSDPA 358 (521)
T ss_pred ccccCCCceEEEEEEeCCeEEEEEEeecCc--eEEEECCCCC
Confidence 432 3334666666677778776654444 8999997743
No 368
>PHA03098 kelch-like protein; Provisional
Probab=58.93 E-value=2.7e+02 Score=30.22 Aligned_cols=200 Identities=10% Similarity=-0.104 Sum_probs=92.5
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC-
Q 008927 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD- 244 (548)
Q Consensus 166 ~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~- 244 (548)
.+|++++.. .+-+.+.+... +...++. ..-+| .|+.+ ..... .....+++.+|..++. -+.+...+.
T Consensus 312 ~v~~yd~~~--~~W~~~~~~~~-~R~~~~~--~~~~~-~lyv~-GG~~~--~~~~~~v~~yd~~~~~---W~~~~~lp~~ 379 (534)
T PHA03098 312 SVVSYDTKT--KSWNKVPELIY-PRKNPGV--TVFNN-RIYVI-GGIYN--SISLNTVESWKPGESK---WREEPPLIFP 379 (534)
T ss_pred cEEEEeCCC--CeeeECCCCCc-ccccceE--EEECC-EEEEE-eCCCC--CEecceEEEEcCCCCc---eeeCCCcCcC
Confidence 689999876 55566655421 1111221 22244 44443 22211 1134578889998876 333332111
Q ss_pred ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCC--C
Q 008927 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK--N 322 (548)
Q Consensus 245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~--~ 322 (548)
........-+|+ |..+.-...+.. ....++++|... +++. .+...+ . .........-+++||++.-.. .
T Consensus 380 r~~~~~~~~~~~-iYv~GG~~~~~~-~~~~v~~yd~~t-~~W~---~~~~~p-~--~r~~~~~~~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 380 RYNPCVVNVNNL-IYVIGGISKNDE-LLKTVECFSLNT-NKWS---KGSPLP-I--SHYGGCAIYHDGKIYVIGGISYID 450 (534)
T ss_pred CccceEEEECCE-EEEECCcCCCCc-ccceEEEEeCCC-Ceee---ecCCCC-c--cccCceEEEECCEEEEECCccCCC
Confidence 111111222443 433321111100 125688888873 4442 222211 0 111122334466777763210 1
Q ss_pred ---CeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC---eEEEEEEECCCCceEee
Q 008927 323 ---GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---RSYLGILDDFGHSLSLL 396 (548)
Q Consensus 323 ---g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g---~~~L~~~dl~~g~~~~l 396 (548)
....++++|+++++.+.+.+.. .+.+.. .... -++.||+..-..+ ...++.+|+++++++.+
T Consensus 451 ~~~~~~~v~~yd~~~~~W~~~~~~~----~~r~~~---~~~~-----~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKWTELSSLN----FPRINA---SLCI-----FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred CCcccceEEEecCCCCceeeCCCCC----cccccc---eEEE-----ECCEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 1345999999988887765321 122111 1112 1345554432111 34678888888888766
Q ss_pred cC
Q 008927 397 DI 398 (548)
Q Consensus 397 ~~ 398 (548)
..
T Consensus 519 ~~ 520 (534)
T PHA03098 519 CK 520 (534)
T ss_pred CC
Confidence 53
No 369
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=58.75 E-value=26 Score=33.64 Aligned_cols=55 Identities=11% Similarity=0.203 Sum_probs=31.6
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCC
Q 008927 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY 532 (548)
Q Consensus 471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~Ny 532 (548)
+|++|+-|=.+|++. ..++.|+||..-|=- +-...|-..+.||+..||.|+..|.
T Consensus 11 ~~~~I~vwet~P~~~-----~~~~~~tiliA~Gf~--rrmdh~agLA~YL~~NGFhViRyDs 65 (294)
T PF02273_consen 11 DGRQIRVWETRPKNN-----EPKRNNTILIAPGFA--RRMDHFAGLAEYLSANGFHVIRYDS 65 (294)
T ss_dssp TTEEEEEEEE---TT-----S---S-EEEEE-TT---GGGGGGHHHHHHHHTTT--EEEE--
T ss_pred CCCEEEEeccCCCCC-----CcccCCeEEEecchh--HHHHHHHHHHHHHhhCCeEEEeccc
Confidence 899999999999862 246778888865432 2233455667899999999998764
No 370
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=58.69 E-value=62 Score=27.03 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=12.8
Q ss_pred EECCCCCEEEEEEec
Q 008927 250 RMDPRGERMAWIEWH 264 (548)
Q Consensus 250 ~~SPDGk~La~~~~~ 264 (548)
.|||||++|.|.-.+
T Consensus 74 vfSpDG~~lSFTYND 88 (122)
T PF12566_consen 74 VFSPDGSWLSFTYND 88 (122)
T ss_pred EECCCCCEEEEEecc
Confidence 799999999998644
No 371
>KOG3101 consensus Esterase D [General function prediction only]
Probab=58.07 E-value=17 Score=33.99 Aligned_cols=52 Identities=25% Similarity=0.311 Sum_probs=33.4
Q ss_pred EEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccC--hHHHHHHh-cCcEEEEeC--CCC
Q 008927 476 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN--LSIQYWTS-RGWAFVDVN--YGG 534 (548)
Q Consensus 476 ~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~--~~~Q~~as-rGyaVl~~N--yRG 534 (548)
.+.+++|. + +.+|+-|++.+.-|= | +....|. ...|..|+ .|++|+.|| +||
T Consensus 30 f~vylPp~---a--~~~k~~P~lf~LSGL-T-CT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG 86 (283)
T KOG3101|consen 30 FGVYLPPD---A--PRGKRCPVLFYLSGL-T-CTHENFIEKSGFQQQASKHGLAVVAPDTSPRG 86 (283)
T ss_pred EEEecCCC---c--ccCCcCceEEEecCC-c-ccchhhHhhhhHHHhHhhcCeEEECCCCCCCc
Confidence 45555553 2 357889999998764 2 2333343 34577776 599999987 666
No 372
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.07 E-value=2.6e+02 Score=29.59 Aligned_cols=39 Identities=15% Similarity=-0.072 Sum_probs=27.8
Q ss_pred CccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCCCCCCCcc
Q 008927 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSD 130 (548)
Q Consensus 89 ~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~~~~~~~~ 130 (548)
...++|++.| ++.++++.-.... +..++++++.+ |+.++
T Consensus 180 ~fsAHPkvDp~tgel~~fg~s~~~-~~l~~~~v~~~--G~l~r 219 (490)
T COG3670 180 PFSAHPKVDPDTGELFNFGYSFAL-PYLTYYVVDAD--GELRR 219 (490)
T ss_pred ccccCccCCCCCceEEEEEeccCC-CeeEEEEECCC--CcEEE
Confidence 4567899999 8878888655443 47888988887 45543
No 373
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=55.57 E-value=63 Score=31.62 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=20.4
Q ss_pred eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEec
Q 008927 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS 281 (548)
Q Consensus 246 ~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~ 281 (548)
..-.+||||+.-|||... ...|.++|+-
T Consensus 46 WRkl~WSpD~tlLa~a~S--------~G~i~vfdl~ 73 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAES--------TGTIRVFDLM 73 (282)
T ss_pred heEEEECCCCcEEEEEcC--------CCeEEEEecc
Confidence 455689999999997652 3457777775
No 374
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=55.44 E-value=24 Score=35.82 Aligned_cols=17 Identities=6% Similarity=0.257 Sum_probs=13.9
Q ss_pred HHHhcCcEEEEeCCCCC
Q 008927 519 YWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 519 ~~asrGyaVl~~NyRGS 535 (548)
.|.+++|.|+.+|.||.
T Consensus 94 ~L~~~~~~Vi~~Dl~G~ 110 (343)
T PRK08775 94 ALDPARFRLLAFDFIGA 110 (343)
T ss_pred ccCccccEEEEEeCCCC
Confidence 35567899999999974
No 375
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=55.37 E-value=2.6e+02 Score=28.99 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=52.1
Q ss_pred EEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCE--EEEEEEeC---CeEEEEEEEC
Q 008927 314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNL--IACSYRQN---GRSYLGILDD 388 (548)
Q Consensus 314 L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~--l~~~~~~~---g~~~L~~~dl 388 (548)
+++.+++ .+ .|+.+|+++.+++.+.... +....-.. .|.+ .++. |+..+++. ..-.||.+|.
T Consensus 70 lIigTdK-~~--GL~VYdL~Gk~lq~~~~Gr--~NNVDvry---gf~l-----~g~~vDlavas~R~~g~n~l~~f~id~ 136 (381)
T PF02333_consen 70 LIIGTDK-KG--GLYVYDLDGKELQSLPVGR--PNNVDVRY---GFPL-----NGKTVDLAVASDRSDGRNSLRLFRIDP 136 (381)
T ss_dssp EEEEEET-TT--EEEEEETTS-EEEEE-SS---EEEEEEEE---EEEE-----TTEEEEEEEEEE-CCCT-EEEEEEEET
T ss_pred eEEEEeC-CC--CEEEEcCCCcEEEeecCCC--cceeeeec---ceec-----CCceEEEEEEecCcCCCCeEEEEEecC
Confidence 8888888 43 6999999887777664211 11100000 1222 4444 44445543 2457899998
Q ss_pred CCCceEeecCC-------CceeEee----eecCCEEEEEEecCCCCCeEEEEE
Q 008927 389 FGHSLSLLDIP-------FTDIDNI----TLGNDCLFVEGASGVEPSSVAKVT 430 (548)
Q Consensus 389 ~~g~~~~l~~~-------~~~~~~~----s~d~~~l~~~~ss~~~p~~l~~~d 430 (548)
+++.++.++.+ ...+.++ ++..+.++++.+.....-+-|++.
T Consensus 137 ~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~ 189 (381)
T PF02333_consen 137 DTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELT 189 (381)
T ss_dssp TTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEE
T ss_pred CCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEE
Confidence 88888776532 2234444 333445555555544444455553
No 376
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=54.23 E-value=33 Score=35.13 Aligned_cols=38 Identities=16% Similarity=0.351 Sum_probs=23.8
Q ss_pred cCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeec
Q 008927 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (548)
Q Consensus 301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~ 341 (548)
..+..+.|+||+.++....- . ..++.+|+..|+...+.
T Consensus 124 ~diydL~Ws~d~~~l~s~s~-d--ns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGSV-D--NSVRLWDVHAGQLLAIL 161 (434)
T ss_pred cchhhhhccCCCceeeeeec-c--ceEEEEEeccceeEeec
Confidence 44678999999983333221 1 24667777777765544
No 377
>PHA02713 hypothetical protein; Provisional
Probab=53.84 E-value=3.4e+02 Score=29.83 Aligned_cols=191 Identities=7% Similarity=-0.034 Sum_probs=92.5
Q ss_pred EEEEEECCCCCccCcEEeeecCCce-eeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927 222 EIVAIALNGQNIQEPKVLVSGSDFY-AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (548)
Q Consensus 222 ~l~~idl~~g~~~~~~~L~~~~~~~-~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~ 300 (548)
.++.+|..+++ -..+..-+... ......-++ .|+.+. ...........++.+|... +.+ ..++.-...
T Consensus 273 ~v~~yd~~~~~---W~~l~~mp~~r~~~~~a~l~~-~IYviG-G~~~~~~~~~~v~~Yd~~~-n~W---~~~~~m~~~-- 341 (557)
T PHA02713 273 CILVYNINTME---YSVISTIPNHIINYASAIVDN-EIIIAG-GYNFNNPSLNKVYKINIEN-KIH---VELPPMIKN-- 341 (557)
T ss_pred CEEEEeCCCCe---EEECCCCCccccceEEEEECC-EEEEEc-CCCCCCCccceEEEEECCC-CeE---eeCCCCcch--
Confidence 57788888876 44444322211 111122244 354333 2110000135688888763 333 223221100
Q ss_pred cCCcCceECcCCcEEEEEeCC--CCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC
Q 008927 301 ESPTEPKWSSKGELFFVTDRK--NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (548)
Q Consensus 301 ~~~~~~~wspDG~L~~~sd~~--~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~ 378 (548)
.. ....-.-+|+||++.-.. .....+..+|+.+++...+.+... +....+ ... -++.||+..-.+
T Consensus 342 R~-~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~----~r~~~~---~~~-----~~g~IYviGG~~ 408 (557)
T PHA02713 342 RC-RFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPI----ALSSYG---MCV-----LDQYIYIIGGRT 408 (557)
T ss_pred hh-ceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCc----cccccc---EEE-----ECCEEEEEeCCC
Confidence 11 111223477888885331 112458889998888877654211 110000 111 245666543211
Q ss_pred C---------------------eEEEEEEECCCCceEeecC-CCce-eEeeeecCCEEEEEEecCC---CCCeEEEEEcC
Q 008927 379 G---------------------RSYLGILDDFGHSLSLLDI-PFTD-IDNITLGNDCLFVEGASGV---EPSSVAKVTLD 432 (548)
Q Consensus 379 g---------------------~~~L~~~dl~~g~~~~l~~-~~~~-~~~~s~d~~~l~~~~ss~~---~p~~l~~~d~~ 432 (548)
+ ...+.++|+++.+++.+.. +... ..++..-++.||+++.... ....+.++|++
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 409 EHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred cccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCC
Confidence 1 2458899999999987753 2111 1123344567877764321 12346788887
Q ss_pred C-Cce
Q 008927 433 D-HKL 436 (548)
Q Consensus 433 ~-~~~ 436 (548)
+ .+.
T Consensus 489 ~~~~W 493 (557)
T PHA02713 489 TYNGW 493 (557)
T ss_pred CCCCe
Confidence 6 554
No 378
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=52.77 E-value=27 Score=34.23 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=46.7
Q ss_pred CCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHhc-CcEEEEeCCCC
Q 008927 456 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGG 534 (548)
Q Consensus 456 ~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~asr-GyaVl~~NyRG 534 (548)
.++-+.|-|..+.. |+ ++..|+..|.. +.-|++++.|||-.+.- .|....+-++++ -..++.+|.||
T Consensus 45 ~yFdekedv~i~~~-~~-t~n~Y~t~~~~--------t~gpil~l~HG~G~S~L--SfA~~a~el~s~~~~r~~a~DlRg 112 (343)
T KOG2564|consen 45 DYFDEKEDVSIDGS-DL-TFNVYLTLPSA--------TEGPILLLLHGGGSSAL--SFAIFASELKSKIRCRCLALDLRG 112 (343)
T ss_pred HhhccccccccCCC-cc-eEEEEEecCCC--------CCccEEEEeecCcccch--hHHHHHHHHHhhcceeEEEeeccc
Confidence 45556677777775 54 89999998842 23499999999966543 344445555543 55668999998
Q ss_pred C
Q 008927 535 S 535 (548)
Q Consensus 535 S 535 (548)
-
T Consensus 113 H 113 (343)
T KOG2564|consen 113 H 113 (343)
T ss_pred c
Confidence 4
No 379
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=51.91 E-value=57 Score=24.17 Aligned_cols=46 Identities=26% Similarity=0.224 Sum_probs=22.1
Q ss_pred CCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccc
Q 008927 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE 508 (548)
Q Consensus 460 ~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~ 508 (548)
+.|.....++ ||--+.-+=+++.+. -. +..++.|.|++.||==.+.
T Consensus 11 ~~E~h~V~T~-DGYiL~l~RIp~~~~-~~-~~~~~k~pVll~HGL~~ss 56 (63)
T PF04083_consen 11 PCEEHEVTTE-DGYILTLHRIPPGKN-SS-NQNKKKPPVLLQHGLLQSS 56 (63)
T ss_dssp --EEEEEE-T-TSEEEEEEEE-SBTT-CT-TTTTT--EEEEE--TT--G
T ss_pred CcEEEEEEeC-CCcEEEEEEccCCCC-Cc-ccCCCCCcEEEECCcccCh
Confidence 4577888898 997766665555431 11 1245568888889954333
No 380
>PHA01753 Holliday junction resolvase
Probab=51.64 E-value=16 Score=30.92 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=20.4
Q ss_pred hHHHHHHhcCcEEEEeCCCCCCCCC
Q 008927 515 LSIQYWTSRGWAFVDVNYGGSTGLS 539 (548)
Q Consensus 515 ~~~Q~~asrGyaVl~~NyRGStGyG 539 (548)
.-.++|-++||.|+.-|+|+|..+|
T Consensus 13 ~a~~~L~~~G~~il~rn~~~~~~~G 37 (121)
T PHA01753 13 KTLEILESNGFKALRIPVSGTGKQA 37 (121)
T ss_pred HHHHHHHHCCCEEEEeccccCCCCC
Confidence 3468999999999999999974344
No 381
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=50.63 E-value=3.6e+02 Score=29.29 Aligned_cols=111 Identities=9% Similarity=0.103 Sum_probs=60.5
Q ss_pred eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcC-Cc-EEEEEeCCCC
Q 008927 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK-GE-LFFVTDRKNG 323 (548)
Q Consensus 246 ~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspD-G~-L~~~sd~~~g 323 (548)
++...|+.||-.++.-. ....++++|+.... ...+....-. ..+-.+.|.+. ++ -++..|.
T Consensus 231 vTal~F~d~gL~~aVGt--------s~G~v~iyDLRa~~----pl~~kdh~~e--~pi~~l~~~~~~~q~~v~S~Dk--- 293 (703)
T KOG2321|consen 231 VTALKFRDDGLHVAVGT--------STGSVLIYDLRASK----PLLVKDHGYE--LPIKKLDWQDTDQQNKVVSMDK--- 293 (703)
T ss_pred ceEEEecCCceeEEeec--------cCCcEEEEEcccCC----ceeecccCCc--cceeeecccccCCCceEEecch---
Confidence 45667888898888433 14579999998532 2233322101 33455677554 33 5555554
Q ss_pred eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEE
Q 008927 324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (548)
Q Consensus 324 ~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~d 387 (548)
.-|-.+|..+|+.-....... +.+.+.+.| +.-++|++++.+..+.|.+.
T Consensus 294 -~~~kiWd~~~Gk~~asiEpt~---------~lND~C~~p----~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 294 -RILKIWDECTGKPMASIEPTS---------DLNDFCFVP----GSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred -HHhhhcccccCCceeeccccC---------CcCceeeec----CCceEEEecCCCcceeEEcc
Confidence 123345666666432221111 123355553 45577888887777766664
No 382
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=50.54 E-value=15 Score=37.79 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=30.4
Q ss_pred EEEEc-CCCCCCCCCCCCCCcEEEEEccCccccccCcc----ChHHHHHHhcCcEEEEeCCCCCC
Q 008927 477 AYYYP-PSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----NLSIQYWTSRGWAFVDVNYGGST 536 (548)
Q Consensus 477 g~l~~-P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~----~~~~Q~~asrGyaVl~~NyRGSt 536 (548)
-||++ |.. +.+ +.-|+|+|+|||--+....-. -..+..+.. .-+++.+||.-..
T Consensus 108 ~Wlvk~P~~--~~p---k~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~ 166 (374)
T PF10340_consen 108 YWLVKAPNR--FKP---KSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTS 166 (374)
T ss_pred EEEEeCCcc--cCC---CCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEeccccc
Confidence 57887 743 432 334999999999433221111 011111222 5599999998665
No 383
>PLN02193 nitrile-specifier protein
Probab=50.32 E-value=3.5e+02 Score=28.94 Aligned_cols=159 Identities=10% Similarity=-0.056 Sum_probs=74.1
Q ss_pred ceeEEEEEECCCCCccCcEEeeec---CC-ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcC
Q 008927 219 STTEIVAIALNGQNIQEPKVLVSG---SD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG 294 (548)
Q Consensus 219 ~~~~l~~idl~~g~~~~~~~L~~~---~~-~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~ 294 (548)
..+++|++|+.+.+ -+.+... +. ....-... .+.+|..+. ...... ....++++|+.. .++. .+..
T Consensus 242 ~~ndv~~yD~~t~~---W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~G-G~~~~~-~~~~~~~yd~~t-~~W~---~~~~ 311 (470)
T PLN02193 242 QYNGFYSFDTTTNE---WKLLTPVEEGPTPRSFHSMAA-DEENVYVFG-GVSATA-RLKTLDSYNIVD-KKWF---HCST 311 (470)
T ss_pred CCccEEEEECCCCE---EEEcCcCCCCCCCccceEEEE-ECCEEEEEC-CCCCCC-CcceEEEEECCC-CEEE---eCCC
Confidence 34789999999876 4444321 11 11111122 234454332 111111 134688888873 4432 2221
Q ss_pred CC-CCcccCCcCceECcCCcEEEEEeC-CCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEE
Q 008927 295 FD-PTIVESPTEPKWSSKGELFFVTDR-KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIA 372 (548)
Q Consensus 295 ~~-~~~~~~~~~~~wspDG~L~~~sd~-~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~ 372 (548)
.. ... .......-.-+|+||++--. +....+++.+|+++.+.+.+.... +...+.... ..... ++.||
T Consensus 312 ~~~~~~-~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g-~~P~~R~~~---~~~~~-----~~~iy 381 (470)
T PLN02193 312 PGDSFS-IRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFG-VRPSERSVF---ASAAV-----GKHIV 381 (470)
T ss_pred CCCCCC-CCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCC-CCCCCccee---EEEEE-----CCEEE
Confidence 10 000 01111122346777766322 122457999999998887775310 000111111 11221 34454
Q ss_pred EEEEeC----------C--eEEEEEEECCCCceEeec
Q 008927 373 CSYRQN----------G--RSYLGILDDFGHSLSLLD 397 (548)
Q Consensus 373 ~~~~~~----------g--~~~L~~~dl~~g~~~~l~ 397 (548)
+.--.. + ...++.+|+++.+++.+.
T Consensus 382 v~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~ 418 (470)
T PLN02193 382 IFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLD 418 (470)
T ss_pred EECCccCCccccccCccceeccEEEEEcCcCEEEEcc
Confidence 332110 0 125899999999998775
No 384
>PRK07868 acyl-CoA synthetase; Validated
Probab=50.15 E-value=51 Score=39.06 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=31.5
Q ss_pred cEEEEEccCccccccCccCh---HHHHHHhcCcEEEEeCCCCC
Q 008927 496 PLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 496 Pliv~iHGGP~~~~~~~~~~---~~Q~~asrGyaVl~~NyRGS 535 (548)
|.||++||-+...+.+...+ .+.+|+++||-|+.+|++.|
T Consensus 68 ~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~G~~ 110 (994)
T PRK07868 68 PPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDFGSP 110 (994)
T ss_pred CcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcCCCC
Confidence 77889999988776655443 27899999999999998543
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=50.08 E-value=2.6e+02 Score=27.39 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=75.6
Q ss_pred eEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEE
Q 008927 249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 328 (548)
Q Consensus 249 p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly 328 (548)
..+..||. .|.+... +..+.|..+++++ |++.....+...- ..+.+. .+ +++||-++-+ ++ ..+
T Consensus 50 L~~~~~g~--LyESTG~----yG~S~l~~~d~~t-g~~~~~~~l~~~~--FgEGit--~~--~d~l~qLTWk-~~--~~f 113 (264)
T PF05096_consen 50 LEFLDDGT--LYESTGL----YGQSSLRKVDLET-GKVLQSVPLPPRY--FGEGIT--IL--GDKLYQLTWK-EG--TGF 113 (264)
T ss_dssp EEEEETTE--EEEEECS----TTEEEEEEEETTT-SSEEEEEE-TTT----EEEEE--EE--TTEEEEEESS-SS--EEE
T ss_pred EEecCCCE--EEEeCCC----CCcEEEEEEECCC-CcEEEEEECCccc--cceeEE--EE--CCEEEEEEec-CC--eEE
Confidence 34444553 3455322 2468999999984 6543333343321 001111 12 4458888877 54 467
Q ss_pred EEeccCCeeE-eecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCce-Eeec--CCCceeE
Q 008927 329 KWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLD--IPFTDID 404 (548)
Q Consensus 329 ~~d~~~g~~~-~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~-~~l~--~~~~~~~ 404 (548)
.+|.++-+.. .+. +....|-. +. |++.|+.+ +|..+|+.+|+++=+. +.+. .....+.
T Consensus 114 ~yd~~tl~~~~~~~-----y~~EGWGL-----t~-----dg~~Li~S---DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~ 175 (264)
T PF05096_consen 114 VYDPNTLKKIGTFP-----YPGEGWGL-----TS-----DGKRLIMS---DGSSRLYFLDPETFKEVRTIQVTDNGRPVS 175 (264)
T ss_dssp EEETTTTEEEEEEE------SSS--EE-----EE-----CSSCEEEE----SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred EEccccceEEEEEe-----cCCcceEE-----Ec-----CCCEEEEE---CCccceEEECCcccceEEEEEEEECCEECC
Confidence 7887664432 221 11234532 21 67776643 7889999999876543 3333 2222222
Q ss_pred ---eeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 405 ---NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 405 ---~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
-+---++.||.-. =....|+++|+++|++
T Consensus 176 ~LNELE~i~G~IyANV---W~td~I~~Idp~tG~V 207 (264)
T PF05096_consen 176 NLNELEYINGKIYANV---WQTDRIVRIDPETGKV 207 (264)
T ss_dssp -EEEEEEETTEEEEEE---TTSSEEEEEETTT-BE
T ss_pred CcEeEEEEcCEEEEEe---CCCCeEEEEeCCCCeE
Confidence 2322345554433 2347899999999985
No 386
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=49.72 E-value=40 Score=36.81 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=39.0
Q ss_pred eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEE
Q 008927 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV 317 (548)
Q Consensus 246 ~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~ 317 (548)
+...++-|||..|...+ +++|+++|.+. |.. ...+.+.. ..+.-.+||.||+++..
T Consensus 15 i~d~afkPDGsqL~lAA---------g~rlliyD~nd-G~l--lqtLKgHK----DtVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAA---------GSRLLVYDTSD-GTL--LQPLKGHK----DTVYCVAYAKDGKRFAS 70 (1081)
T ss_pred hheeEECCCCceEEEec---------CCEEEEEeCCC-ccc--cccccccc----ceEEEEEEccCCceecc
Confidence 45668999999998544 56899999984 531 33444443 45667899999985543
No 387
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=49.17 E-value=2.6e+02 Score=30.98 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=62.3
Q ss_pred EECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc-CCc-EEEE-EeCCCCeee
Q 008927 250 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGE-LFFV-TDRKNGFWN 326 (548)
Q Consensus 250 ~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp-DG~-L~~~-sd~~~g~~~ 326 (548)
..|||-++|+|....... +...+ +.++..++- +-+... ..++..+|.. ||+ |.+. .++..-...
T Consensus 144 ~~spD~~~ia~~~~~~~~---e~~~~-v~~~~~~~~-----~~~~~~----~g~~y~~w~~~dg~~l~~~t~~~~~r~hk 210 (712)
T KOG2237|consen 144 ESSPDHKYIAYTKDTEGK---ELFTV-VIDVKFSGP-----VWTHDG----KGVSYLAWAKQDGEDLLYGTEDENNRPHK 210 (712)
T ss_pred ccCCCceEEEEEEcCCCC---cccee-eeeeccCCc-----eeeccC----CceEeeeecccCCceeeeeeeccccCcce
Confidence 478999999987643322 12334 555554321 111111 3467788987 898 5555 455233456
Q ss_pred EEEEeccCCeeEe--ecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeE---EEEEEECCC
Q 008927 327 LHKWIESNNEVLA--IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS---YLGILDDFG 390 (548)
Q Consensus 327 Ly~~d~~~g~~~~--l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~---~L~~~dl~~ 390 (548)
||...+.+.+-+. +.. +...|.|+++. ... |++.+.+.....+.. .++.+|+..
T Consensus 211 vy~h~~Gtdq~~Dvl~~~---e~d~~~~vf~~---~~k----D~~~~~i~si~~t~s~~~~vf~~d~~~ 269 (712)
T KOG2237|consen 211 VYYHTLGTDQSEDVLLYE---EKDEPKHVFIS---ETK----DSGFYTINSISETCSPVNKVFLCDLSS 269 (712)
T ss_pred EEEEecccCCCcceEEEe---cCCCCeEEEEE---EEe----cCceEEEEEeeccCCccceEEEEeccc
Confidence 8888876553332 221 22345665431 111 555544444433333 777777643
No 388
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=48.66 E-value=35 Score=34.69 Aligned_cols=52 Identities=19% Similarity=0.350 Sum_probs=30.7
Q ss_pred CceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEE
Q 008927 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHK 329 (548)
Q Consensus 272 ~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~ 329 (548)
...|+.+.++.++++.+...+.... . ..+......|||.||+.+|. +| .||+
T Consensus 280 ~~~i~~~~~~~~~~~~~~~~~~~~~-~--~r~~~v~~~pDG~Lyv~~d~-~G--~iyR 331 (331)
T PF07995_consen 280 GGRIWRLDLDEDGSVTEEEEFLGGF-G--GRPRDVAQGPDGALYVSDDS-DG--KIYR 331 (331)
T ss_dssp TTEEEEEEEETTEEEEEEEEECTTS-S--S-EEEEEEETTSEEEEEE-T-TT--TEEE
T ss_pred CCEEEEEeeecCCCccceEEccccC-C--CCceEEEEcCCCeEEEEECC-CC--eEeC
Confidence 4577777776544433333333322 1 34567889999999999885 44 4553
No 389
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=48.50 E-value=3.6e+02 Score=28.55 Aligned_cols=151 Identities=12% Similarity=0.091 Sum_probs=83.5
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC
Q 008927 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (548)
Q Consensus 150 ~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~ 229 (548)
|.-|| +|+-.-+..|.+-++|.... .-.+++-... .......|+|+++.++....|.. -+-.+|++
T Consensus 76 fR~DG-~LlaaGD~sG~V~vfD~k~r-~iLR~~~ah~----apv~~~~f~~~d~t~l~s~sDd~--------v~k~~d~s 141 (487)
T KOG0310|consen 76 FRSDG-RLLAAGDESGHVKVFDMKSR-VILRQLYAHQ----APVHVTKFSPQDNTMLVSGSDDK--------VVKYWDLS 141 (487)
T ss_pred eecCC-eEEEccCCcCcEEEeccccH-HHHHHHhhcc----CceeEEEecccCCeEEEecCCCc--------eEEEEEcC
Confidence 43344 55555666788888885420 1123443321 12333468998887766544421 23334666
Q ss_pred CCCccCcE-EeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceE
Q 008927 230 GQNIQEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (548)
Q Consensus 230 ~g~~~~~~-~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~w 308 (548)
+.. .+ .|....|++....|+|-...|++.. .. + ..|.+.|....+. ....+..+ ..+....+
T Consensus 142 ~a~---v~~~l~~htDYVR~g~~~~~~~hivvtG-sY-----D-g~vrl~DtR~~~~--~v~elnhg-----~pVe~vl~ 204 (487)
T KOG0310|consen 142 TAY---VQAELSGHTDYVRCGDISPANDHIVVTG-SY-----D-GKVRLWDTRSLTS--RVVELNHG-----CPVESVLA 204 (487)
T ss_pred CcE---EEEEecCCcceeEeeccccCCCeEEEec-CC-----C-ceEEEEEeccCCc--eeEEecCC-----CceeeEEE
Confidence 665 32 3444567777888999888887554 21 1 2355555543222 23344442 45677788
Q ss_pred CcCCcEEEEEeCCCCeeeEEEEeccCC
Q 008927 309 SSKGELFFVTDRKNGFWNLHKWIESNN 335 (548)
Q Consensus 309 spDG~L~~~sd~~~g~~~Ly~~d~~~g 335 (548)
.|.|.++..+ |...+-.+|+.+|
T Consensus 205 lpsgs~iasA----gGn~vkVWDl~~G 227 (487)
T KOG0310|consen 205 LPSGSLIASA----GGNSVKVWDLTTG 227 (487)
T ss_pred cCCCCEEEEc----CCCeEEEEEecCC
Confidence 8998865543 2245667787644
No 390
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=48.42 E-value=2.2e+02 Score=26.21 Aligned_cols=39 Identities=13% Similarity=-0.015 Sum_probs=27.5
Q ss_pred CCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEee
Q 008927 199 DPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240 (548)
Q Consensus 199 SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~ 240 (548)
|.+|+.=+|+.....++..+....||+.|+.+++ ..+|.
T Consensus 66 s~~~~~saciegkg~~a~eEgiGkIYIkn~~~~~---~~~L~ 104 (200)
T PF15525_consen 66 SENGKYSACIEGKGPEAEEEGIGKIYIKNLNNNN---WWSLQ 104 (200)
T ss_pred ccCCceeEEEEcCCCccccccceeEEEEecCCCc---eEEEE
Confidence 4578888888444334444567899999999998 65553
No 391
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.78 E-value=96 Score=33.45 Aligned_cols=68 Identities=15% Similarity=0.098 Sum_probs=46.0
Q ss_pred cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCc
Q 008927 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (548)
Q Consensus 194 ~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~ 273 (548)
...+++|+.++++.-++|. .|..+|...+. ..++...-.-...+|.|||.-++ +. + +.+
T Consensus 263 ~~ca~sp~E~kLvlGC~Dg---------SiiLyD~~~~~----t~~~ka~~~P~~iaWHp~gai~~-V~-s------~qG 321 (545)
T PF11768_consen 263 ICCARSPSEDKLVLGCEDG---------SIILYDTTRGV----TLLAKAEFIPTLIAWHPDGAIFV-VG-S------EQG 321 (545)
T ss_pred eEEecCcccceEEEEecCC---------eEEEEEcCCCe----eeeeeecccceEEEEcCCCcEEE-EE-c------CCc
Confidence 3456899999988888763 68888987764 33443321234568999998665 44 2 246
Q ss_pred eEEEEEecC
Q 008927 274 ELWVGYISE 282 (548)
Q Consensus 274 ~L~v~~~~~ 282 (548)
+|.+.|+.-
T Consensus 322 elQ~FD~AL 330 (545)
T PF11768_consen 322 ELQCFDMAL 330 (545)
T ss_pred eEEEEEeec
Confidence 888888873
No 392
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.56 E-value=2.9e+02 Score=29.20 Aligned_cols=99 Identities=7% Similarity=-0.033 Sum_probs=56.8
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEe-----eecCCceeeeEECCCCCEEEEEEecCC
Q 008927 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL-----VSGSDFYAFPRMDPRGERMAWIEWHHP 266 (548)
Q Consensus 192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L-----~~~~~~~~~p~~SPDGk~La~~~~~~~ 266 (548)
.+-+..||+|.+.|+.-+.+ +.+-.++..+.+ ..+. ..+....-.+.|+. ..-||++..
T Consensus 68 ~I~SIkFSlDnkilAVQR~~---------~~v~f~nf~~d~---~~l~~~~~ck~k~~~IlGF~W~~-s~e~A~i~~--- 131 (657)
T KOG2377|consen 68 EIKSIKFSLDNKILAVQRTS---------KTVDFCNFIPDN---SQLEYTQECKTKNANILGFCWTS-STEIAFITD--- 131 (657)
T ss_pred ceeEEEeccCcceEEEEecC---------ceEEEEecCCCc---hhhHHHHHhccCcceeEEEEEec-CeeEEEEec---
Confidence 35567899998876654333 234444543333 2211 11222344567885 477999872
Q ss_pred CCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEE
Q 008927 267 NMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT 318 (548)
Q Consensus 267 ~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~s 318 (548)
.+.++|.++-.. . ..+.+.... ..+....|.+|-.+++++
T Consensus 132 ----~G~e~y~v~pek-r---slRlVks~~----~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 132 ----QGIEFYQVLPEK-R---SLRLVKSHN----LNVNWYMYCPETAVILLS 171 (657)
T ss_pred ----CCeEEEEEchhh-h---hhhhhhhcc----cCccEEEEccccceEeee
Confidence 256788776442 1 244444433 567788999998855443
No 393
>PHA02713 hypothetical protein; Provisional
Probab=44.30 E-value=4.7e+02 Score=28.72 Aligned_cols=237 Identities=7% Similarity=-0.063 Sum_probs=111.9
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc
Q 008927 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (548)
Q Consensus 166 ~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~ 245 (548)
.++.+++.. .+-+.+++.+. +...++. ..-++ .|+.+ ..... .....+.++.+|+.+.. -..+..-+..
T Consensus 273 ~v~~yd~~~--~~W~~l~~mp~-~r~~~~~--a~l~~-~IYvi-GG~~~-~~~~~~~v~~Yd~~~n~---W~~~~~m~~~ 341 (557)
T PHA02713 273 CILVYNINT--MEYSVISTIPN-HIINYAS--AIVDN-EIIIA-GGYNF-NNPSLNKVYKINIENKI---HVELPPMIKN 341 (557)
T ss_pred CEEEEeCCC--CeEEECCCCCc-cccceEE--EEECC-EEEEE-cCCCC-CCCccceEEEEECCCCe---EeeCCCCcch
Confidence 477888876 55566665421 1111222 22233 44443 22110 01134678999998876 3333322111
Q ss_pred -eeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCC-C-
Q 008927 246 -YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK-N- 322 (548)
Q Consensus 246 -~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~-~- 322 (548)
.......-+|+ |..+. ...+.. ....+..+|... .++ ..++.-+.. .... ..-.-+|+||++.-.. .
T Consensus 342 R~~~~~~~~~g~-IYviG-G~~~~~-~~~sve~Ydp~~-~~W---~~~~~mp~~--r~~~-~~~~~~g~IYviGG~~~~~ 411 (557)
T PHA02713 342 RCRFSLAVIDDT-IYAIG-GQNGTN-VERTIECYTMGD-DKW---KMLPDMPIA--LSSY-GMCVLDQYIYIIGGRTEHI 411 (557)
T ss_pred hhceeEEEECCE-EEEEC-CcCCCC-CCceEEEEECCC-CeE---EECCCCCcc--cccc-cEEEECCEEEEEeCCCccc
Confidence 11112223554 44333 111111 124577778763 443 223321100 1111 1223477788874321 0
Q ss_pred ------------------CeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC----e
Q 008927 323 ------------------GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG----R 380 (548)
Q Consensus 323 ------------------g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g----~ 380 (548)
....++++|+++++.+.+.+... +.... ..... ++.||+..-.++ .
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~----~r~~~---~~~~~-----~~~IYv~GG~~~~~~~~ 479 (557)
T PHA02713 412 DYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT----GTIRP---GVVSH-----KDDIYVVCDIKDEKNVK 479 (557)
T ss_pred ccccccccccccccccccccceEEEECCCCCeEeecCCCCc----ccccC---cEEEE-----CCEEEEEeCCCCCCccc
Confidence 12458889998888876654211 11000 11222 456776532211 2
Q ss_pred EEEEEEECCC-CceEeecC-CCce-eEeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 381 SYLGILDDFG-HSLSLLDI-PFTD-IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 381 ~~L~~~dl~~-g~~~~l~~-~~~~-~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
..+.++|+++ .+++.+.. +... ..++..-++.||+++.-. ....+..+|+.+.+.
T Consensus 480 ~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~-~~~~~e~yd~~~~~W 537 (557)
T PHA02713 480 TCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYE-SYMLQDTFNVYTYEW 537 (557)
T ss_pred eeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeec-ceeehhhcCcccccc
Confidence 3578999998 78887753 2211 122234466777776532 223566778777765
No 394
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=43.77 E-value=4.6e+02 Score=28.53 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=31.0
Q ss_pred EEEEEEECCCCceEe-ecCCCceeEe-eeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 381 SYLGILDDFGHSLSL-LDIPFTDIDN-ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 381 ~~L~~~dl~~g~~~~-l~~~~~~~~~-~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
..|..+|+.+|++.- ...+.....+ +...++ ++|+.+ ....++.+|.++|+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~-lvf~g~---~~G~l~a~D~~TGe~ 494 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGD-LVFYGT---LEGYFKAFDAKTGEE 494 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCc-EEEEEC---CCCeEEEEECCCCCE
Confidence 468889999997652 2222211222 233444 666653 246899999999973
No 395
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.39 E-value=5.8e+02 Score=29.53 Aligned_cols=73 Identities=10% Similarity=0.140 Sum_probs=41.6
Q ss_pred EEEEEECCCCCccCcEEeee-cCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927 222 EIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (548)
Q Consensus 222 ~l~~idl~~g~~~~~~~L~~-~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~ 300 (548)
.|...|+..+. .+.+ .....-...||+|++++|+++ .-.|.+++.+- +..+.-.+.
T Consensus 472 ~v~lfdvQq~~-----~~~si~~s~vkyvvws~dm~~vAll~---------Kh~i~i~~kkL-----~l~~sihEt---- 528 (1202)
T KOG0292|consen 472 SVTLFDVQQKK-----KVGSIKVSKVKYVVWSNDMSRVALLS---------KHTITIADKKL-----ELLCSIHET---- 528 (1202)
T ss_pred eEEEEEeecce-----EEEEEecCceeEEEEcCccchhhhcc---------cceEEEEecch-----hheecchhe----
Confidence 57777877654 2221 122345668999999999887 22477776431 122222221
Q ss_pred cCCcCceECcCCcEEEE
Q 008927 301 ESPTEPKWSSKGELFFV 317 (548)
Q Consensus 301 ~~~~~~~wspDG~L~~~ 317 (548)
..+-+-+|..||-++|.
T Consensus 529 iriksgawde~gVfiYt 545 (1202)
T KOG0292|consen 529 IRIKSGAWDEDGVFIYT 545 (1202)
T ss_pred eEeeeceeccCceEEEE
Confidence 34555678888873333
No 396
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=41.83 E-value=4.1e+02 Score=27.33 Aligned_cols=110 Identities=13% Similarity=0.129 Sum_probs=62.9
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCC
Q 008927 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (548)
Q Consensus 193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~ 272 (548)
+.+..|++ .. ++|...- ...|-++||.++.. ...++.+.. +.....+|..+.|+--+ . .
T Consensus 263 Vs~V~w~d-~~-v~yS~Sw--------DHTIk~WDletg~~--~~~~~~~ks-l~~i~~~~~~~Ll~~gs-s-------d 321 (423)
T KOG0313|consen 263 VSSVVWSD-AT-VIYSVSW--------DHTIKVWDLETGGL--KSTLTTNKS-LNCISYSPLSKLLASGS-S-------D 321 (423)
T ss_pred eeeEEEcC-CC-ceEeecc--------cceEEEEEeecccc--eeeeecCcc-eeEeecccccceeeecC-C-------C
Confidence 55677887 33 4454332 14789999998862 334443333 33456788888776433 1 2
Q ss_pred ceEEEEEecC-CCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEE
Q 008927 273 AELWVGYISE-NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 328 (548)
Q Consensus 273 ~~L~v~~~~~-~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly 328 (548)
..|.+.|... +|.+. ...+.+.. ..+....|+|-....|++-.-++...||
T Consensus 322 r~irl~DPR~~~gs~v-~~s~~gH~----nwVssvkwsp~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVV-SQSLIGHK----NWVSSVKWSPTNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred CceeecCCCCCCCcee-EEeeecch----hhhhheecCCCCceEEEEEecCCeEEEE
Confidence 3466667653 33332 34455544 5788899999988555543214444444
No 397
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=41.73 E-value=2.6e+02 Score=26.89 Aligned_cols=77 Identities=8% Similarity=0.044 Sum_probs=44.6
Q ss_pred CcCceECc-CCcEEEEEeCCCCeeeEEEEeccCCeeEee--cccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC
Q 008927 303 PTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAI--YSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (548)
Q Consensus 303 ~~~~~wsp-DG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l--~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g 379 (548)
+-...|-| +|+||-+++. .+||.+|+.+|....+ .+...-.....+ .+.|.| --++|-+... .
T Consensus 29 l~GID~Rpa~G~LYgl~~~----g~lYtIn~~tG~aT~vg~s~~~~al~g~~~-----gvDFNP---~aDRlRvvs~-~- 94 (236)
T PF14339_consen 29 LVGIDFRPANGQLYGLGST----GRLYTINPATGAATPVGASPLTVALSGTAF-----GVDFNP---AADRLRVVSN-T- 94 (236)
T ss_pred EEEEEeecCCCCEEEEeCC----CcEEEEECCCCeEEEeecccccccccCceE-----EEecCc---ccCcEEEEcc-C-
Confidence 33444555 5779988765 3799999999987777 221111111111 245554 3456655543 2
Q ss_pred eEEEEEEECCCCceE
Q 008927 380 RSYLGILDDFGHSLS 394 (548)
Q Consensus 380 ~~~L~~~dl~~g~~~ 394 (548)
.+-+++++++|.+.
T Consensus 95 -GqNlR~npdtGav~ 108 (236)
T PF14339_consen 95 -GQNLRLNPDTGAVT 108 (236)
T ss_pred -CcEEEECCCCCCce
Confidence 34467888888754
No 398
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=40.12 E-value=5e+02 Score=27.85 Aligned_cols=88 Identities=17% Similarity=-0.015 Sum_probs=40.9
Q ss_pred CEEEEEeC----CCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCC
Q 008927 155 DTVIFSNY----KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (548)
Q Consensus 155 ~~i~F~~~----~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~ 230 (548)
+.|+|.+. .....|.+|.+| ..|-..+.. ......+..-++|..++.. . ..++.+|+.+
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~~G---~Vrw~~~~~---~~~~~~~~~l~nG~ll~~~-~----------~~~~e~D~~G 176 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDNNG---DVRWYLPLD---SGSDNSFKQLPNGNLLIGS-G----------NRLYEIDLLG 176 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEETTS----EEEEE-GG---GT--SSEEE-TTS-EEEEE-B----------TEEEEE-TT-
T ss_pred CcEEEEeCCCCCCCceEEEECCCc---cEEEEEccC---ccccceeeEcCCCCEEEec-C----------CceEEEcCCC
Confidence 35677664 235788999874 555332221 1122225677888865442 2 3688999876
Q ss_pred CCccCcEEeeecC---CceeeeEECCCCCEEEEEE
Q 008927 231 QNIQEPKVLVSGS---DFYAFPRMDPRGERMAWIE 262 (548)
Q Consensus 231 g~~~~~~~L~~~~---~~~~~p~~SPDGk~La~~~ 262 (548)
.. .....-.. .+.-....-|+|..|+.+.
T Consensus 177 ~v---~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 177 KV---IWEYDLPGGYYDFHHDIDELPNGNLLILAS 208 (477)
T ss_dssp -E---EEEEE--TTEE-B-S-EEE-TTS-EEEEEE
T ss_pred CE---EEeeecCCcccccccccEECCCCCEEEEEe
Confidence 63 33322122 2334556789999777544
No 399
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=39.80 E-value=19 Score=33.35 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=24.6
Q ss_pred cEEEEEccCccccccCccChHHHHHHh---cCcEEEEeCCCC
Q 008927 496 PLLVKSHGGPTSEARGILNLSIQYWTS---RGWAFVDVNYGG 534 (548)
Q Consensus 496 Pliv~iHGGP~~~~~~~~~~~~Q~~as---rGyaVl~~NyRG 534 (548)
|.|+++||+|........ ..+.+.. + |.|+.+|.||
T Consensus 22 ~~i~~~hg~~~~~~~~~~--~~~~~~~~~~~-~~~~~~d~~g 60 (282)
T COG0596 22 PPLVLLHGFPGSSSVWRP--VFKVLPALAAR-YRVIAPDLRG 60 (282)
T ss_pred CeEEEeCCCCCchhhhHH--HHHHhhccccc-eEEEEecccC
Confidence 599999999976544333 2223332 3 9999999994
No 400
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=39.01 E-value=1.1e+02 Score=19.74 Aligned_cols=25 Identities=8% Similarity=0.151 Sum_probs=16.6
Q ss_pred CCCCEEEEEEeccCCCCCCceeEEEEEECCCCC
Q 008927 200 PRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (548)
Q Consensus 200 pDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~ 232 (548)
|||++|+.. ... .+.|.++|+.+++
T Consensus 1 pd~~~lyv~-~~~-------~~~v~~id~~~~~ 25 (42)
T TIGR02276 1 PDGTKLYVT-NSG-------SNTVSVIDTATNK 25 (42)
T ss_pred CCCCEEEEE-eCC-------CCEEEEEECCCCe
Confidence 688886553 322 2478889997765
No 401
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=38.89 E-value=4.9e+02 Score=27.42 Aligned_cols=156 Identities=18% Similarity=0.155 Sum_probs=78.7
Q ss_pred ECCEEEEEeCCCCeE--EEE----eCCCCCCCceecCCCCCCCCceecceeeCCCC--CEEEEEEeccCCCCCCceeEEE
Q 008927 153 FGDTVIFSNYKDQRL--YKH----SIDSKDSSPLPITPDYGEPLVSYADGIFDPRF--NRYVTVREDRRQDALNSTTEIV 224 (548)
Q Consensus 153 ~~~~i~F~~~~~~~L--y~~----~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG--~~i~~v~~~~~~~~~~~~~~l~ 224 (548)
+++..+|+..+|+.+ |.+ +.+.. ..+.++-... +..+.+.|+...+.| .+|+-+++|+ .+-
T Consensus 133 ~dgs~iiTgskDg~V~vW~l~~lv~a~~~-~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~---------t~k 201 (476)
T KOG0646|consen 133 DDGSHIITGSKDGAVLVWLLTDLVSADND-HSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDR---------TIK 201 (476)
T ss_pred CCCcEEEecCCCccEEEEEEEeecccccC-CCccceeeec-cCcceeEEEEecCCCccceEEEecCCc---------eEE
Confidence 455677887777744 432 11210 2233332211 123456676666543 3444444443 466
Q ss_pred EEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCC-Cc------------eeeeEE
Q 008927 225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GD------------VYKRVC 291 (548)
Q Consensus 225 ~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~-g~------------~~~~~~ 291 (548)
++|+..|. .-.-...+.......++|-+++ +|+... ...||+.++... |. -++...
T Consensus 202 ~wdlS~g~---LLlti~fp~si~av~lDpae~~-~yiGt~-------~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~ 270 (476)
T KOG0646|consen 202 LWDLSLGV---LLLTITFPSSIKAVALDPAERV-VYIGTE-------EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV 270 (476)
T ss_pred EEEeccce---eeEEEecCCcceeEEEcccccE-EEecCC-------cceEEeeehhcCCcccccccccccccccceeee
Confidence 67888886 2111122333456678887664 456522 345666555321 10 011233
Q ss_pred EcCCCCCcccCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCC
Q 008927 292 VAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN 335 (548)
Q Consensus 292 l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g 335 (548)
+.+...+ -.+.-++.+-||.|+..-|. +|.. .++|+.+.
T Consensus 271 ~~Gh~~~--~~ITcLais~DgtlLlSGd~-dg~V--cvWdi~S~ 309 (476)
T KOG0646|consen 271 LVGHENE--SAITCLAISTDGTLLLSGDE-DGKV--CVWDIYSK 309 (476)
T ss_pred eccccCC--cceeEEEEecCccEEEeeCC-CCCE--EEEecchH
Confidence 3443211 24677888999998888777 6644 44454443
No 402
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=38.37 E-value=1.2e+02 Score=29.55 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=49.5
Q ss_pred EEEEEECCCCCccCcEEe-eecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcc
Q 008927 222 EIVAIALNGQNIQEPKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (548)
Q Consensus 222 ~l~~idl~~g~~~~~~~L-~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~ 300 (548)
-.|.++-.++..+-...+ .+.++ ...-++-||+|-+|-..|++ ++.++...+ .. ...++.-..
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpG-v~gvrIRpD~KIlATAGWD~--------RiRVyswrt-l~--pLAVLkyHs---- 293 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPG-VSGVRIRPDGKILATAGWDH--------RIRVYSWRT-LN--PLAVLKYHS---- 293 (323)
T ss_pred eeeeeccccCcccccceEEecCCC-ccceEEccCCcEEeecccCC--------cEEEEEecc-CC--chhhhhhhh----
Confidence 455666666642111112 22333 55678999999888656654 466777764 32 222333322
Q ss_pred cCCcCceECcCCcEEEEEeCCCCeeeEE
Q 008927 301 ESPTEPKWSSKGELFFVTDRKNGFWNLH 328 (548)
Q Consensus 301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly 328 (548)
..+...+|+||-.|...... ++.-.||
T Consensus 294 agvn~vAfspd~~lmAaask-D~rISLW 320 (323)
T KOG0322|consen 294 AGVNAVAFSPDCELMAAASK-DARISLW 320 (323)
T ss_pred cceeEEEeCCCCchhhhccC-CceEEee
Confidence 45788999999665444433 3433333
No 403
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=37.52 E-value=3.5e+02 Score=30.26 Aligned_cols=99 Identities=23% Similarity=0.206 Sum_probs=64.0
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC----ceeeeEECCCCCEEEEEEecCCCC
Q 008927 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD----FYAFPRMDPRGERMAWIEWHHPNM 268 (548)
Q Consensus 193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~----~~~~p~~SPDGk~La~~~~~~~~~ 268 (548)
.-|+...|..+.++.++.|+ .|-++|+.+|+ ...+..+.. -..-....|.|-+||-.. .
T Consensus 599 lYDm~Vdp~~k~v~t~cQDr---------nirif~i~sgK---q~k~FKgs~~~eG~lIKv~lDPSgiY~atSc-s---- 661 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDR---------NIRIFDIESGK---QVKSFKGSRDHEGDLIKVILDPSGIYLATSC-S---- 661 (1080)
T ss_pred EEEeeeCCCcceEEEEeccc---------ceEEEeccccc---eeeeecccccCCCceEEEEECCCccEEEEee-c----
Confidence 34667788888888777654 46677888887 566655432 233456788898888443 2
Q ss_pred CCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEE
Q 008927 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (548)
Q Consensus 269 p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~s 318 (548)
...|.++|.-. |+. .....+.. +.+....|++|=+ |+-++
T Consensus 662 ---dktl~~~Df~s-gEc--vA~m~GHs----E~VTG~kF~nDCkHlISvs 702 (1080)
T KOG1408|consen 662 ---DKTLCFVDFVS-GEC--VAQMTGHS----EAVTGVKFLNDCKHLISVS 702 (1080)
T ss_pred ---CCceEEEEecc-chh--hhhhcCcc----hheeeeeecccchhheeec
Confidence 34688999874 542 22234433 5677888999887 65544
No 404
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=37.26 E-value=1e+02 Score=33.36 Aligned_cols=70 Identities=17% Similarity=0.310 Sum_probs=36.4
Q ss_pred ceeeCCCCCEEEEEEeccCCC-CCCceeEEEEEECCCCCccCcEEeeecCC--ceeeeEECCCCCEEEEEEecCCC
Q 008927 195 DGIFDPRFNRYVTVREDRRQD-ALNSTTEIVAIALNGQNIQEPKVLVSGSD--FYAFPRMDPRGERMAWIEWHHPN 267 (548)
Q Consensus 195 ~~~~SpDG~~i~~v~~~~~~~-~~~~~~~l~~idl~~g~~~~~~~L~~~~~--~~~~p~~SPDGk~La~~~~~~~~ 267 (548)
.+.++|.|+..+. +|.... ..+...-++.+....++..+.++...++- -+..|.|||||+.| |+.-.||.
T Consensus 504 nl~fD~~GrLWi~--TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~Tl-FV~vQHPG 576 (616)
T COG3211 504 NLAFDPWGRLWIQ--TDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTL-FVNVQHPG 576 (616)
T ss_pred ceEECCCCCEEEE--ecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceE-EEEecCCC
Confidence 3567777765443 443211 01111123333333332111555443332 36789999999987 57777875
No 405
>PF09757 Arb2: Arb2 domain; InterPro: IPR019154 The fission yeast Argonaute siRNA chaperone (ARC) complex contains the Argonaute protein Ago1 and two previously uncharacterised proteins, Arb1 and Arb2, both of which are required for histone H3 Lys9 (H3-K9) methylation, heterochromatin assembly and siRNA generation []. This entry represents a region found in both Arb2 and the Hda1 protein. ; PDB: 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G.
Probab=37.03 E-value=11 Score=34.43 Aligned_cols=53 Identities=26% Similarity=0.346 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCCCCCCCCCCCcEEEEEccCcccccc------CccCh------HHHHHHhcCcEEEEeCCC
Q 008927 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR------GILNL------SIQYWTSRGWAFVDVNYG 533 (548)
Q Consensus 475 i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~------~~~~~------~~Q~~asrGyaVl~~NyR 533 (548)
.+..++.-.|. | .+.-.+||++||.|. .+. .+.+. .++.-.++||+|+.+|+-
T Consensus 84 ~~~~I~~S~n~-~----~~~~~llViih~~g~-~wa~~~~~~~~l~~gs~~~~~i~~A~~~~~gVI~~N~~ 148 (178)
T PF09757_consen 84 FHSQIFASPNI-Y----ETAKKLLVIIHGSGV-IWARRLIINGGLDSGSQIPQYIKWALKEGYGVIDLNPN 148 (178)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccc-c----ccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 45555554331 2 134579999999887 322 12322 233346899999999983
No 406
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=36.49 E-value=4.4e+02 Score=26.18 Aligned_cols=119 Identities=17% Similarity=0.228 Sum_probs=57.6
Q ss_pred CCCC-EEEEEEecCCCCCCCCceEEEEEecC-CCceeeeEEEcCCCCCcccCCcCceECcCCc-EEE--EEeCCCCeeeE
Q 008927 253 PRGE-RMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFF--VTDRKNGFWNL 327 (548)
Q Consensus 253 PDGk-~La~~~~~~~~~p~~~~~L~v~~~~~-~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~--~sd~~~g~~~L 327 (548)
||.+ +||.-+.... ..+.|-++.++. .++ ....+..+.. ..+....|.||.+ .|= +... +.+.+|
T Consensus 56 ~~~~~rla~gS~~Ee----~~Nkvqiv~ld~~s~e---~~~~a~fd~~--YP~tK~~wiPd~~g~~pdlLATs-~D~LRl 125 (364)
T KOG0290|consen 56 PDKKFRLAVGSFIEE----YNNKVQIVQLDEDSGE---LVEDANFDHP--YPVTKLMWIPDSKGVYPDLLATS-SDFLRL 125 (364)
T ss_pred CCcceeEEEeeeccc----cCCeeEEEEEccCCCc---eeccCCCCCC--CCccceEecCCccccCcchhhcc-cCeEEE
Confidence 4544 6775543322 134555555543 233 2222222211 4567788999865 331 1222 456789
Q ss_pred EEEeccCCeeEe--ec--ccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCC
Q 008927 328 HKWIESNNEVLA--IY--SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (548)
Q Consensus 328 y~~d~~~g~~~~--l~--~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g 391 (548)
|+++.+.++++. +. ....++..|. .+|.|.. -+-.++.+..-+....+| |+++|
T Consensus 126 Wri~~ee~~~~~~~~L~~~kns~~~aPl-----TSFDWne---~dp~~igtSSiDTTCTiW--die~~ 183 (364)
T KOG0290|consen 126 WRIGDEESRVELQSVLNNNKNSEFCAPL-----TSFDWNE---VDPNLIGTSSIDTTCTIW--DIETG 183 (364)
T ss_pred EeccCcCCceehhhhhccCcccccCCcc-----ccccccc---CCcceeEeecccCeEEEE--EEeec
Confidence 999876655432 11 1233444443 2355542 222344455555666665 44444
No 407
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.24 E-value=2.9e+02 Score=32.35 Aligned_cols=143 Identities=10% Similarity=0.049 Sum_probs=76.7
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCC
Q 008927 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (548)
Q Consensus 165 ~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~ 244 (548)
+..-+-|+..+ .....++... .......+.|.||+-.-+.++.+.+ ....|-.+|++--. .+.+.+.....
T Consensus 184 g~~~iWDlr~~-~pii~ls~~~--~~~~~S~l~WhP~~aTql~~As~dd-----~~PviqlWDlR~as-sP~k~~~~H~~ 254 (1049)
T KOG0307|consen 184 GRAVIWDLRKK-KPIIKLSDTP--GRMHCSVLAWHPDHATQLLVASGDD-----SAPVIQLWDLRFAS-SPLKILEGHQR 254 (1049)
T ss_pred CCceeccccCC-CcccccccCC--CccceeeeeeCCCCceeeeeecCCC-----CCceeEeecccccC-Cchhhhccccc
Confidence 34444466541 2233444332 2355778899999865555544432 12345566665432 11444533333
Q ss_pred ceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCC
Q 008927 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG 323 (548)
Q Consensus 245 ~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g 323 (548)
.+....|.+.+.+++..+ .. ..++++.+.++ |++ .-.+.... ..++...|.|-.- ++..+.- +|
T Consensus 255 GilslsWc~~D~~lllSs-gk------D~~ii~wN~~t-gEv--l~~~p~~~----nW~fdv~w~pr~P~~~A~asf-dg 319 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSS-GK------DNRIICWNPNT-GEV--LGELPAQG----NWCFDVQWCPRNPSVMAAASF-DG 319 (1049)
T ss_pred ceeeeccCCCCchhhhcc-cC------CCCeeEecCCC-ceE--eeecCCCC----cceeeeeecCCCcchhhhhee-cc
Confidence 355678999887776554 21 35677777764 542 12222221 4578889988755 4444444 56
Q ss_pred eeeEEEEe
Q 008927 324 FWNLHKWI 331 (548)
Q Consensus 324 ~~~Ly~~d 331 (548)
.-.||-+.
T Consensus 320 kI~I~sl~ 327 (1049)
T KOG0307|consen 320 KISIYSLQ 327 (1049)
T ss_pred ceeeeeee
Confidence 66666553
No 408
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=35.84 E-value=6.3e+02 Score=27.76 Aligned_cols=150 Identities=16% Similarity=0.123 Sum_probs=76.8
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCcee------c-CCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLP------I-TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (548)
Q Consensus 154 ~~~i~F~~~~~~~Ly~~~~~~~~~~~~~------l-T~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i 226 (548)
....+++....|.||+-...+ ..+.. + +.... ...+....++|=+..++..+.+ -.-.||.-
T Consensus 359 ~p~~FiVGTe~G~v~~~~r~g--~~~~~~~~~~~~~~~~~h--~g~v~~v~~nPF~~k~fls~gD-------W~vriWs~ 427 (555)
T KOG1587|consen 359 DPNHFIVGTEEGKVYKGCRKG--YTPAPEVSYKGHSTFITH--IGPVYAVSRNPFYPKNFLSVGD-------WTVRIWSE 427 (555)
T ss_pred CCceEEEEcCCcEEEEEeccC--Cccccccccccccccccc--CcceEeeecCCCccceeeeecc-------ceeEeccc
Confidence 334455555568888876665 32222 1 11100 1112233455544444333222 23467766
Q ss_pred ECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCc
Q 008927 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (548)
Q Consensus 227 dl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~ 306 (548)
+..... .-.+....+.+...+|||---.+.++. +. ...|++.|+..+-. .....+.-.. ......
T Consensus 428 ~~~~~P---l~~~~~~~~~v~~vaWSptrpavF~~~-d~------~G~l~iWDLl~~~~-~Pv~s~~~~~----~~l~~~ 492 (555)
T KOG1587|consen 428 DVIASP---LLSLDSSPDYVTDVAWSPTRPAVFATV-DG------DGNLDIWDLLQDDE-EPVLSQKVCS----PALTRV 492 (555)
T ss_pred cCCCCc---chhhhhccceeeeeEEcCcCceEEEEE-cC------CCceehhhhhcccc-CCcccccccc----ccccee
Confidence 544443 223334455577789999765665554 32 35677777753211 1111111111 234567
Q ss_pred eECcCCcEEEEEeCCCCeeeEEEE
Q 008927 307 KWSSKGELFFVTDRKNGFWNLHKW 330 (548)
Q Consensus 307 ~wspDG~L~~~sd~~~g~~~Ly~~ 330 (548)
.|+++|+++.+.|. .|...+|.+
T Consensus 493 ~~s~~g~~lavGd~-~G~~~~~~l 515 (555)
T KOG1587|consen 493 RWSPNGKLLAVGDA-NGTTHILKL 515 (555)
T ss_pred ecCCCCcEEEEecC-CCcEEEEEc
Confidence 89999998888887 776666555
No 409
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.75 E-value=1.1e+02 Score=30.42 Aligned_cols=62 Identities=21% Similarity=0.141 Sum_probs=44.6
Q ss_pred CCeEEEEEEECCCCceEeecCC--------CceeEee--eecCCEEEEEEecCCCCCeEEEEEcCCCceeee
Q 008927 378 NGRSYLGILDDFGHSLSLLDIP--------FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (548)
Q Consensus 378 ~g~~~L~~~dl~~g~~~~l~~~--------~~~~~~~--s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~ 439 (548)
+-.+|++.+|.+.++++.|-.. .+.++.+ .+-++.|++.-......--||.+|.++++.++|
T Consensus 75 NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L 146 (339)
T PF09910_consen 75 NKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKL 146 (339)
T ss_pred eccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeec
Confidence 4568899999999998877432 1235554 566778888777666666789999999986544
No 410
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=35.66 E-value=6.2e+02 Score=27.64 Aligned_cols=60 Identities=7% Similarity=0.068 Sum_probs=36.4
Q ss_pred cceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEe
Q 008927 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEW 263 (548)
Q Consensus 194 ~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~ 263 (548)
.....||||+.|+.+-. ...+|-++|+..=.. ...+-. ..+.+..-.+|.|-.+++|+..
T Consensus 55 t~ik~s~DGqY~lAtG~--------YKP~ikvydlanLSL-KFERhl-Dae~V~feiLsDD~SK~v~L~~ 114 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGT--------YKPQIKVYDLANLSL-KFERHL-DAEVVDFEILSDDYSKSVFLQN 114 (703)
T ss_pred ceeEecCCCcEEEEecc--------cCCceEEEEccccee-eeeecc-cccceeEEEeccchhhheEeec
Confidence 35679999999887622 234677777765320 011112 1233445568888888888873
No 411
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=35.51 E-value=1.3e+02 Score=29.10 Aligned_cols=63 Identities=22% Similarity=0.404 Sum_probs=42.0
Q ss_pred CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccChHHHHHHh----cCcEEEEeCCCCCC
Q 008927 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS----RGWAFVDVNYGGST 536 (548)
Q Consensus 461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~~~~Q~~as----rGyaVl~~NyRGSt 536 (548)
.+.+..++. -|..+...++.|.. ...++|++.||- +.+.. ....+|.. ..+.|+.-||+|+.
T Consensus 35 v~v~~~~t~-rgn~~~~~y~~~~~--------~~~~~lly~hGN--a~Dlg---q~~~~~~~l~~~ln~nv~~~DYSGyG 100 (258)
T KOG1552|consen 35 VEVFKVKTS-RGNEIVCMYVRPPE--------AAHPTLLYSHGN--AADLG---QMVELFKELSIFLNCNVVSYDYSGYG 100 (258)
T ss_pred cceEEeecC-CCCEEEEEEEcCcc--------ccceEEEEcCCc--ccchH---HHHHHHHHHhhcccceEEEEeccccc
Confidence 455556666 78888888888831 245999999998 33222 22233332 49999999999964
Q ss_pred C
Q 008927 537 G 537 (548)
Q Consensus 537 G 537 (548)
.
T Consensus 101 ~ 101 (258)
T KOG1552|consen 101 R 101 (258)
T ss_pred c
Confidence 3
No 412
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=35.11 E-value=1.1e+02 Score=34.75 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=50.7
Q ss_pred EECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcC
Q 008927 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (548)
Q Consensus 226 idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~ 305 (548)
|=+++|+ +.+-..-+-......|.|.-- +.+..|.+ ..+.+..-. ..+ ........+ ..+.-
T Consensus 45 IfadtGE---Pqr~Vt~P~hatSLCWHpe~~-vLa~gwe~-------g~~~v~~~~-~~e--~htv~~th~----a~i~~ 106 (1416)
T KOG3617|consen 45 IFADTGE---PQRDVTYPVHATSLCWHPEEF-VLAQGWEM-------GVSDVQKTN-TTE--THTVVETHP----APIQG 106 (1416)
T ss_pred EEecCCC---CCcccccceehhhhccChHHH-HHhhcccc-------ceeEEEecC-Cce--eeeeccCCC----CCcee
Confidence 3356777 444333333345678988643 33355443 334444322 111 122222222 45677
Q ss_pred ceECcCCcEEEEEeCCCCeeeEEEEecc
Q 008927 306 PKWSSKGELFFVTDRKNGFWNLHKWIES 333 (548)
Q Consensus 306 ~~wspDG~L~~~sd~~~g~~~Ly~~d~~ 333 (548)
+.||+||..++..|+ -|...||++|.-
T Consensus 107 l~wS~~G~~l~t~d~-~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 107 LDWSHDGTVLMTLDN-PGSVHLWRYDVI 133 (1416)
T ss_pred EEecCCCCeEEEcCC-CceeEEEEeeec
Confidence 899999997777777 788899999853
No 413
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=34.56 E-value=1.3e+02 Score=32.74 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=38.3
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCcc---ChHHHHHHhcCcEEEEeCCCCCC
Q 008927 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL---NLSIQYWTSRGWAFVDVNYGGST 536 (548)
Q Consensus 463 ~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~---~~~~Q~~asrGyaVl~~NyRGSt 536 (548)
.|-|+.. .+.-+-|.|..+. ..+.| ||+|||-=...+-..+ +..+.+|+++||-|+.+|.||-+
T Consensus 166 ~VV~~~~----~~eLi~Y~P~t~~-----~~~~P-lLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg 232 (532)
T TIGR01838 166 AVVFENE----LFQLIQYEPTTET-----VHKTP-LLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPD 232 (532)
T ss_pred eEEEECC----cEEEEEeCCCCCc-----CCCCc-EEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCC
Confidence 4555553 2555667775311 12345 5667874332222222 24678999999999999999843
No 414
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=34.52 E-value=65 Score=32.65 Aligned_cols=109 Identities=13% Similarity=0.182 Sum_probs=60.6
Q ss_pred eeeEEECCEEEEE-eCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEE
Q 008927 148 GAFRIFGDTVIFS-NYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (548)
Q Consensus 148 ~~~~~~~~~i~F~-~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~i 226 (548)
.+|.| +...|+ .++|-.||.+|..- --+++-.... ..--..+..|||-|+.++.-+-|. .|-+.
T Consensus 235 IswnP--eafnF~~a~ED~nlY~~DmR~---l~~p~~v~~d-hvsAV~dVdfsptG~EfvsgsyDk---------sIRIf 299 (433)
T KOG0268|consen 235 ICWNP--EAFNFVAANEDHNLYTYDMRN---LSRPLNVHKD-HVSAVMDVDFSPTGQEFVSGSYDK---------SIRIF 299 (433)
T ss_pred eecCc--cccceeeccccccceehhhhh---hcccchhhcc-cceeEEEeccCCCcchhccccccc---------eEEEe
Confidence 47878 344444 45678999999853 1223322210 112355778999999876543332 34445
Q ss_pred ECCCCCccCcEEee--ecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEe
Q 008927 227 ALNGQNIQEPKVLV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYI 280 (548)
Q Consensus 227 dl~~g~~~~~~~L~--~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~ 280 (548)
+...+. .+-+. .-...+....||-|.++|. ...+. .+-.||-+..
T Consensus 300 ~~~~~~---SRdiYhtkRMq~V~~Vk~S~Dskyi~-SGSdd-----~nvRlWka~A 346 (433)
T KOG0268|consen 300 PVNHGH---SRDIYHTKRMQHVFCVKYSMDSKYII-SGSDD-----GNVRLWKAKA 346 (433)
T ss_pred ecCCCc---chhhhhHhhhheeeEEEEeccccEEE-ecCCC-----cceeeeecch
Confidence 555554 33332 2223355678999999875 32221 2345665554
No 415
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=34.12 E-value=5.9e+02 Score=29.23 Aligned_cols=24 Identities=21% Similarity=0.051 Sum_probs=16.3
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCceE
Q 008927 368 KNLIACSYRQNGRSYLGILDDFGHSLS 394 (548)
Q Consensus 368 ~~~l~~~~~~~g~~~L~~~dl~~g~~~ 394 (548)
+++|++... + .+|+.+|.++|+..
T Consensus 260 ~~rV~~~T~-D--g~LiALDA~TGk~~ 283 (764)
T TIGR03074 260 ARRIILPTS-D--ARLIALDADTGKLC 283 (764)
T ss_pred CCEEEEecC-C--CeEEEEECCCCCEE
Confidence 346665432 3 46999999999765
No 416
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=34.07 E-value=7.1e+02 Score=27.85 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=23.7
Q ss_pred EEEEECCCCceEeecCCCceeEeeeecCCEEEEEEec
Q 008927 383 LGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGAS 419 (548)
Q Consensus 383 L~~~dl~~g~~~~l~~~~~~~~~~s~d~~~l~~~~ss 419 (548)
||++|.....+..-...+.++..++.+++.|++...+
T Consensus 308 iyv~d~~~~~v~l~se~~~DI~dVs~~~neiFvL~~d 344 (726)
T KOG3621|consen 308 IYVFDSNNSQVYLWSEGGHDILDVSHCGNEIFVLNLD 344 (726)
T ss_pred EEEEEeccceEEEeecCCCceeEEeecCceEEEEecC
Confidence 8888876655444344455666667777777666543
No 417
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=34.06 E-value=6.2e+02 Score=27.14 Aligned_cols=165 Identities=14% Similarity=0.052 Sum_probs=72.0
Q ss_pred CEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceee-eEECCCCCEEEEEEecCCCCCCCCceEEEEEec
Q 008927 203 NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAF-PRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS 281 (548)
Q Consensus 203 ~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~-p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~ 281 (548)
..|.++..... .....+|.+|.++- .+-.......... ...-+||..++ .. ...++.+|+.
T Consensus 114 ~gl~~~~~~~~----~~~~~~~~iD~~G~----Vrw~~~~~~~~~~~~~~l~nG~ll~-~~---------~~~~~e~D~~ 175 (477)
T PF05935_consen 114 DGLYFVNGNDW----DSSSYTYLIDNNGD----VRWYLPLDSGSDNSFKQLPNGNLLI-GS---------GNRLYEIDLL 175 (477)
T ss_dssp T-EEEEEETT------BEEEEEEEETTS-----EEEEE-GGGT--SSEEE-TTS-EEE-EE---------BTEEEEE-TT
T ss_pred CcEEEEeCCCC----CCCceEEEECCCcc----EEEEEccCccccceeeEcCCCCEEE-ec---------CCceEEEcCC
Confidence 44667654111 13467899997764 4433322221111 34678888654 33 2467888875
Q ss_pred CCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEe-------CC--CCeeeEEEEeccCCeeEeeccc------cc
Q 008927 282 ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTD-------RK--NGFWNLHKWIESNNEVLAIYSL------DA 345 (548)
Q Consensus 282 ~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd-------~~--~g~~~Ly~~d~~~g~~~~l~~~------~~ 345 (548)
|++.....+.+.. . ..-+...+.|+|. |+...+ .. .-...|..+| .+|++...... ..
T Consensus 176 --G~v~~~~~l~~~~-~--~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~ 249 (477)
T PF05935_consen 176 --GKVIWEYDLPGGY-Y--DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYR 249 (477)
T ss_dssp ----EEEEEE--TTE-E---B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT-
T ss_pred --CCEEEeeecCCcc-c--ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCccc
Confidence 4422223333311 0 1235678899999 555552 10 1123588889 78887544311 00
Q ss_pred c--------------cCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeec
Q 008927 346 E--------------FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 397 (548)
Q Consensus 346 d--------------~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~ 397 (548)
. .....|. ..++....+ .++.|+++. .....|+.+|..++++.-+-
T Consensus 250 ~~~~~~~~~~~~~~~~~~~DW~-H~Nsi~yd~---~dd~iivSs--R~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 250 DTVLKPYPYGDISGSGGGRDWL-HINSIDYDP---SDDSIIVSS--RHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTGGT--SSSSS-SSTTSBS---EEEEEEET---TTTEEEEEE--TTT-EEEEEE-TTS-EEEEE
T ss_pred ccccccccccccccCCCCCCcc-ccCccEEeC---CCCeEEEEc--CcceEEEEEECCCCcEEEEe
Confidence 0 1122342 122333432 467787665 34567899998888877443
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=33.43 E-value=4.4e+02 Score=28.21 Aligned_cols=114 Identities=7% Similarity=-0.046 Sum_probs=61.3
Q ss_pred CCcEEEEEeCC--CCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEEC
Q 008927 311 KGELFFVTDRK--NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (548)
Q Consensus 311 DG~L~~~sd~~--~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl 388 (548)
++.||++.... .....++.+|+.+++...+.+... +....+ ... -++.||+..-.++...+.++|+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~----~r~~~~---~v~-----~~~~iYviGG~~~~~sve~ydp 338 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNS----PRLYAS---GVP-----ANNKLYVVGGLPNPTSVERWFH 338 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCc----hhhcce---EEE-----ECCEEEEECCcCCCCceEEEEC
Confidence 34466664221 122457888988888777654211 111111 112 2456776543323345778898
Q ss_pred CCCceEeecC-CCcee-EeeeecCCEEEEEEecCCCCCeEEEEEcCCCce
Q 008927 389 FGHSLSLLDI-PFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (548)
Q Consensus 389 ~~g~~~~l~~-~~~~~-~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~ 436 (548)
.++++..+.. +.... .....-++.||+++........+..+|+++.+.
T Consensus 339 ~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 339 GDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 8888887653 21111 112345677888876433334566788877664
No 419
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=33.06 E-value=4.9e+02 Score=26.57 Aligned_cols=113 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred cCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeeccccc--ccCCCcccccCcceeeeeecCCCCEEEEEEEeC
Q 008927 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA--EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (548)
Q Consensus 301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~--d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~ 378 (548)
.....+....||+||+-+..+ ++|.+|..+|+..-...... ....+.-. .+..+++..
T Consensus 101 ~~~~~~~~~~~G~i~~g~~~g----~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~-------------~~~~v~~~s--- 160 (370)
T COG1520 101 AQLSGPILGSDGKIYVGSWDG----KLYALDASTGTLVWSRNVGGSPYYASPPVV-------------GDGTVYVGT--- 160 (370)
T ss_pred eeccCceEEeCCeEEEecccc----eEEEEECCCCcEEEEEecCCCeEEecCcEE-------------cCcEEEEec---
Q ss_pred CeEEEEEEECCCCceE---eecC--CCceeEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 379 GRSYLGILDDFGHSLS---LLDI--PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 379 g~~~L~~~dl~~g~~~---~l~~--~~~~~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
...+++.+|.++|+.+ .... +..........++.+|+.... . ...++.+|+++|+
T Consensus 161 ~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~-~-~~~~~a~~~~~G~ 220 (370)
T COG1520 161 DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG-Y-DGILYALNAEDGT 220 (370)
T ss_pred CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC-C-cceEEEEEccCCc
No 420
>COG1647 Esterase/lipase [General function prediction only]
Probab=33.05 E-value=45 Score=31.62 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=31.5
Q ss_pred cEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCCCCCChhhhh
Q 008927 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGLSSVPST 544 (548)
Q Consensus 496 Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGStGyG~~f~~ 544 (548)
-.|+++||= ++.. .......-++..+||-|..|||+|-.-=..+|.+
T Consensus 16 ~AVLllHGF-TGt~-~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~ 62 (243)
T COG1647 16 RAVLLLHGF-TGTP-RDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLK 62 (243)
T ss_pred EEEEEEecc-CCCc-HHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhc
Confidence 778888972 2111 1122344678889999999999997666656544
No 421
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=32.88 E-value=5.7e+02 Score=26.35 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=62.5
Q ss_pred CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEE--EeC
Q 008927 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV--TDR 320 (548)
Q Consensus 243 ~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~--sd~ 320 (548)
.+.++...|++ ...++=.+|+| .|.+-|+..++. ...+.+. .+......+|..+|+.. +|+
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDH--------TIk~WDletg~~---~~~~~~~-----ksl~~i~~~~~~~Ll~~gssdr 322 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDH--------TIKVWDLETGGL---KSTLTTN-----KSLNCISYSPLSKLLASGSSDR 322 (423)
T ss_pred ccceeeEEEcC-CCceEeecccc--------eEEEEEeecccc---eeeeecC-----cceeEeecccccceeeecCCCC
Confidence 34577888987 33333345665 367778886443 3334432 34566777887775544 344
Q ss_pred CCCeeeEEEEeccCCe--eEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEE
Q 008927 321 KNGFWNLHKWIESNNE--VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (548)
Q Consensus 321 ~~g~~~Ly~~d~~~g~--~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~ 385 (548)
+|-++|+.++. +...+ -.+.-.|+.. ..|.| .+..++++...++...|+=
T Consensus 323 -----~irl~DPR~~~gs~v~~s----~~gH~nwVss---vkwsp---~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 323 -----HIRLWDPRTGDGSVVSQS----LIGHKNWVSS---VKWSP---TNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred -----ceeecCCCCCCCceeEEe----eecchhhhhh---eecCC---CCceEEEEEecCCeEEEEE
Confidence 67788876654 22211 1123346543 34554 5566766777777766663
No 422
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=32.73 E-value=66 Score=22.24 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=19.9
Q ss_pred CCcCceECcCCcEEEEEeCCCCeeeEEEEe
Q 008927 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWI 331 (548)
Q Consensus 302 ~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d 331 (548)
.+....|+|...|+.+... .|.-.||+++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~-~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTE-DGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEEC-CCeEEEEECC
Confidence 3567899999996666554 5666666653
No 423
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=32.61 E-value=6.3e+02 Score=26.83 Aligned_cols=80 Identities=9% Similarity=-0.088 Sum_probs=37.5
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECC-------CCCccCcEE
Q 008927 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN-------GQNIQEPKV 238 (548)
Q Consensus 166 ~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~-------~g~~~~~~~ 238 (548)
.|..+|...+ ...+++... ......||+||+.|+++.++. -.|+..+++ .|-......
T Consensus 127 ~i~~yDw~~~-~~i~~i~v~------~vk~V~Ws~~g~~val~t~~~--------i~il~~~~~~~~~~~~~g~e~~f~~ 191 (443)
T PF04053_consen 127 FICFYDWETG-KLIRRIDVS------AVKYVIWSDDGELVALVTKDS--------IYILKYNLEAVAAIPEEGVEDAFEL 191 (443)
T ss_dssp EEEEE-TTT---EEEEESS-------E-EEEEE-TTSSEEEEE-S-S--------EEEEEE-HHHHHHBTTTB-GGGEEE
T ss_pred CEEEEEhhHc-ceeeEEecC------CCcEEEEECCCCEEEEEeCCe--------EEEEEecchhcccccccCchhceEE
Confidence 5888888762 333455432 134668999999999885432 244444444 111001344
Q ss_pred eeecCCceeeeEECCCCCEEEEEE
Q 008927 239 LVSGSDFYAFPRMDPRGERMAWIE 262 (548)
Q Consensus 239 L~~~~~~~~~p~~SPDGk~La~~~ 262 (548)
+.+-...+-...|--| -+.|+.
T Consensus 192 ~~E~~~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 192 IHEISERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp EEEE-S--SEEEEETT--EEEEE-
T ss_pred EEEecceeEEEEEEcC--EEEEEc
Confidence 5542444556678544 566655
No 424
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=32.14 E-value=6.2e+02 Score=26.55 Aligned_cols=154 Identities=13% Similarity=0.137 Sum_probs=74.7
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCce-ecceeeCCCCCEEEEEEeccCC--CCCCceeEEEEEECCCCCccCcEEeeec
Q 008927 166 RLYKHSIDSKDSSPLPITPDYGEPLVS-YADGIFDPRFNRYVTVREDRRQ--DALNSTTEIVAIALNGQNIQEPKVLVSG 242 (548)
Q Consensus 166 ~Ly~~~~~~~~~~~~~lT~~~~~~~~~-~~~~~~SpDG~~i~~v~~~~~~--~~~~~~~~l~~idl~~g~~~~~~~L~~~ 242 (548)
.||+++... .+-+++..... +.-| -...+.-|.|...+|--|-... ..-....++|++|+.+.+ -.+|..+
T Consensus 99 dLy~Yn~k~--~eWkk~~spn~-P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trk---weql~~~ 172 (521)
T KOG1230|consen 99 DLYSYNTKK--NEWKKVVSPNA-PPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRK---WEQLEFG 172 (521)
T ss_pred eeeEEeccc--cceeEeccCCC-cCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccch---heeeccC
Confidence 489998876 55666544221 1122 2223444566443443221110 001134689999999988 6777543
Q ss_pred CCceeeeEECC-CCCEE--------EEEEecCCCCCC-CCceEEEEEecCCCceeeeEEEcCC-CCCcccCCcCceECcC
Q 008927 243 SDFYAFPRMDP-RGERM--------AWIEWHHPNMPW-DKAELWVGYISENGDVYKRVCVAGF-DPTIVESPTEPKWSSK 311 (548)
Q Consensus 243 ~~~~~~p~~SP-DGk~L--------a~~~~~~~~~p~-~~~~L~v~~~~~~g~~~~~~~l~~~-~~~~~~~~~~~~wspD 311 (548)
.. | || .|.++ +|-.....+... --++||+++++. =++..... .+. +.. .+-.++.-+|+
T Consensus 173 g~----P--S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdt-ykW~Klep-sga~Ptp--RSGcq~~vtpq 242 (521)
T KOG1230|consen 173 GG----P--SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDT-YKWSKLEP-SGAGPTP--RSGCQFSVTPQ 242 (521)
T ss_pred CC----C--CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccc-eeeeeccC-CCCCCCC--CCcceEEecCC
Confidence 21 1 22 13322 221111111000 135799999984 33322111 221 101 34456677899
Q ss_pred CcEEEEE-----------eCCCCeeeEEEEeccCC
Q 008927 312 GELFFVT-----------DRKNGFWNLHKWIESNN 335 (548)
Q Consensus 312 G~L~~~s-----------d~~~g~~~Ly~~d~~~g 335 (548)
|.|++.- |++.-..++|++++++|
T Consensus 243 g~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~ 277 (521)
T KOG1230|consen 243 GGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDG 277 (521)
T ss_pred CcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcC
Confidence 9865541 22222456888888775
No 425
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=31.53 E-value=40 Score=28.11 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=14.4
Q ss_pred eeeCCCCCEEEEEEecc
Q 008927 196 GIFDPRFNRYVTVREDR 212 (548)
Q Consensus 196 ~~~SpDG~~i~~v~~~~ 212 (548)
-.|||||++|-|+-+|+
T Consensus 73 HvfSpDG~~lSFTYNDh 89 (122)
T PF12566_consen 73 HVFSPDGSWLSFTYNDH 89 (122)
T ss_pred eEECCCCCEEEEEecch
Confidence 46999999999987665
No 426
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=31.51 E-value=3.4e+02 Score=30.35 Aligned_cols=57 Identities=11% Similarity=0.054 Sum_probs=38.5
Q ss_pred ceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEE
Q 008927 195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE 262 (548)
Q Consensus 195 ~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~ 262 (548)
....+|.|-.|+..+.++ .|..+|.-+|+. +-+.+.....+....|++|-|+|.=++
T Consensus 646 Kv~lDPSgiY~atScsdk---------tl~~~Df~sgEc--vA~m~GHsE~VTG~kF~nDCkHlISvs 702 (1080)
T KOG1408|consen 646 KVILDPSGIYLATSCSDK---------TLCFVDFVSGEC--VAQMTGHSEAVTGVKFLNDCKHLISVS 702 (1080)
T ss_pred EEEECCCccEEEEeecCC---------ceEEEEeccchh--hhhhcCcchheeeeeecccchhheeec
Confidence 356788887777766653 588889988873 333443444566778888888876443
No 427
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=31.17 E-value=8e+02 Score=28.26 Aligned_cols=86 Identities=13% Similarity=0.127 Sum_probs=47.0
Q ss_pred eEEEEEECCCCCccCcEEe-------eecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEc
Q 008927 221 TEIVAIALNGQNIQEPKVL-------VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA 293 (548)
Q Consensus 221 ~~l~~idl~~g~~~~~~~L-------~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~ 293 (548)
+.|++||..-.. .+++ ..+.+| ...+-+-+|. ||.-+ . ..+|.++|-- |. ..+..+.
T Consensus 552 n~lfriDpR~~~---~k~v~~~~k~Y~~~~~F-s~~aTt~~G~-iavgs-~-------~G~IRLyd~~--g~-~AKT~lp 615 (794)
T PF08553_consen 552 NSLFRIDPRLSG---NKLVDSQSKQYSSKNNF-SCFATTEDGY-IAVGS-N-------KGDIRLYDRL--GK-RAKTALP 615 (794)
T ss_pred CceEEeccCCCC---CceeeccccccccCCCc-eEEEecCCce-EEEEe-C-------CCcEEeeccc--ch-hhhhcCC
Confidence 579999987532 1222 122333 3335566665 66333 2 3567777743 32 2234454
Q ss_pred CCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEe
Q 008927 294 GFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI 331 (548)
Q Consensus 294 ~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d 331 (548)
+-. ..+....-+.||+ |+..++. .|.+++
T Consensus 616 ~lG----~pI~~iDvt~DGkwilaTc~t-----yLlLi~ 645 (794)
T PF08553_consen 616 GLG----DPIIGIDVTADGKWILATCKT-----YLLLID 645 (794)
T ss_pred CCC----CCeeEEEecCCCcEEEEeecc-----eEEEEE
Confidence 422 4566778899999 6666554 455554
No 428
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=30.91 E-value=4.9e+02 Score=25.01 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=46.2
Q ss_pred CeeeEEECCEEEEEeCCCCeEEEEeCCCCCCCceec--CCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEE
Q 008927 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPI--TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (548)
Q Consensus 147 g~~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~l--T~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~ 224 (548)
|..|.|..+.||=.. ..++||.++... +..+.+ ......-......+.|.|--++|=+|++. .+=+
T Consensus 31 GID~Rpa~G~LYgl~-~~g~lYtIn~~t--G~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~~---------GqNl 98 (236)
T PF14339_consen 31 GIDFRPANGQLYGLG-STGRLYTINPAT--GAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSNT---------GQNL 98 (236)
T ss_pred EEEeecCCCCEEEEe-CCCcEEEEECCC--CeEEEeecccccccccCceEEEecCcccCcEEEEccC---------CcEE
Confidence 346777776666553 357999999998 777777 33210001112345678877777676443 2457
Q ss_pred EEECCCCC
Q 008927 225 AIALNGQN 232 (548)
Q Consensus 225 ~idl~~g~ 232 (548)
++++++|.
T Consensus 99 R~npdtGa 106 (236)
T PF14339_consen 99 RLNPDTGA 106 (236)
T ss_pred EECCCCCC
Confidence 78888886
No 429
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=30.35 E-value=12 Score=21.68 Aligned_cols=9 Identities=44% Similarity=0.918 Sum_probs=6.9
Q ss_pred eECcCCcEE
Q 008927 307 KWSSKGELF 315 (548)
Q Consensus 307 ~wspDG~L~ 315 (548)
.|||||+|+
T Consensus 7 ~FSp~Grl~ 15 (23)
T PF10584_consen 7 TFSPDGRLF 15 (23)
T ss_dssp SBBTTSSBH
T ss_pred eECCCCeEE
Confidence 589999853
No 430
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=30.29 E-value=5.6e+02 Score=25.50 Aligned_cols=65 Identities=8% Similarity=0.090 Sum_probs=35.0
Q ss_pred CceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCC-CCeeeEEEEeccCCeeEeecc
Q 008927 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK-NGFWNLHKWIESNNEVLAIYS 342 (548)
Q Consensus 272 ~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~-~g~~~Ly~~d~~~g~~~~l~~ 342 (548)
..+++++|+.. .++.. +..-+.. .......-.-+++||++.-.. ....+++++|+++.+.+.+.+
T Consensus 138 ~~~v~~yd~~~-~~W~~---~~~~p~~--~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~ 203 (323)
T TIGR03548 138 SNKSYLFNLET-QEWFE---LPDFPGE--PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVAD 203 (323)
T ss_pred CceEEEEcCCC-CCeeE---CCCCCCC--CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCC
Confidence 35799999874 44432 3221100 111112224567788774321 223457899998888877653
No 431
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=30.22 E-value=2.4e+02 Score=31.94 Aligned_cols=58 Identities=9% Similarity=-0.003 Sum_probs=41.2
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEE
Q 008927 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE 262 (548)
Q Consensus 193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~ 262 (548)
...+.||+||..|+- .. ...-|+++-+++++ .+.|-.-..-.....|||||...+.+.
T Consensus 254 V~~L~fS~~G~~LlS--GG-------~E~VLv~Wq~~T~~---kqfLPRLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLS--GG-------REGVLVLWQLETGK---KQFLPRLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred cceeEEecCCceEee--cc-------cceEEEEEeecCCC---cccccccCCeeEEEEEcCCCCeEEEEe
Confidence 456789999987543 22 23578888899987 666655444567789999999776554
No 432
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=29.43 E-value=6.5e+02 Score=25.98 Aligned_cols=64 Identities=8% Similarity=0.194 Sum_probs=31.5
Q ss_pred CCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCce-eEeeeecCCEEEEEEecCCCCCeEEEEEcCCCc
Q 008927 367 EKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD-IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (548)
Q Consensus 367 d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~-~~~~s~d~~~l~~~~ss~~~p~~l~~~d~~~~~ 435 (548)
|+ .+++++.++..-++-+++. .--++.+-.+..+ ++.++.-.++.+..+++ -..|+++|..+|+
T Consensus 162 D~-~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS~isl~~~~~LlS~sG---D~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 162 DD-QFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVSTISLTDNYLLLSGSG---DKTLRLWDITSGK 226 (390)
T ss_pred CC-CEEEEecCCceEEEEecCc-ccchhhhccccHhheeeeeeccCceeeecCC---CCcEEEEecccCC
Confidence 55 4555666666555554432 1112222222222 44555444445444433 3578888887765
No 433
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=29.29 E-value=1.3e+02 Score=18.76 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=17.4
Q ss_pred cCCcCceECcCCcEEEEEeCCCCeeeE
Q 008927 301 ESPTEPKWSSKGELFFVTDRKNGFWNL 327 (548)
Q Consensus 301 ~~~~~~~wspDG~L~~~sd~~~g~~~L 327 (548)
..+....|+|++.+++.... ++.-.|
T Consensus 12 ~~i~~i~~~~~~~~~~s~~~-D~~i~v 37 (39)
T PF00400_consen 12 SSINSIAWSPDGNFLASGSS-DGTIRV 37 (39)
T ss_dssp SSEEEEEEETTSSEEEEEET-TSEEEE
T ss_pred CcEEEEEEecccccceeeCC-CCEEEE
Confidence 56788999999886666544 444333
No 434
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=29.25 E-value=5.8e+02 Score=25.37 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=50.2
Q ss_pred CCcEEEEEeC--CCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeC--CeEEEEEE
Q 008927 311 KGELFFVTDR--KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGIL 386 (548)
Q Consensus 311 DG~L~~~sd~--~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~--g~~~L~~~ 386 (548)
+++||++.-. ......++++|+.+.+.+.+.+.... +.. ...... -++.||+.--.+ ....++++
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~---~r~---~~~~~~-----~~~~iYv~GG~~~~~~~~~~~y 191 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE---PRV---QPVCVK-----LQNELYVFGGGSNIAYTDGYKY 191 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC---CCC---cceEEE-----ECCEEEEEcCCCCccccceEEE
Confidence 5666666321 12234689999988888776532100 110 001111 245566543221 12346789
Q ss_pred ECCCCceEeecCC------Cc--eeEeeeecCCEEEEEEec
Q 008927 387 DDFGHSLSLLDIP------FT--DIDNITLGNDCLFVEGAS 419 (548)
Q Consensus 387 dl~~g~~~~l~~~------~~--~~~~~s~d~~~l~~~~ss 419 (548)
|+++.+++.+... .. ....+...++.|++++..
T Consensus 192 d~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~ 232 (323)
T TIGR03548 192 SPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGF 232 (323)
T ss_pred ecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCc
Confidence 9999999887531 11 111223456677776643
No 435
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=29.15 E-value=67 Score=34.04 Aligned_cols=42 Identities=7% Similarity=-0.027 Sum_probs=26.1
Q ss_pred CCcEEEEEccCccccccCccCh-HHHHHHh--cCcEEEEeCCCCC
Q 008927 494 KPPLLVKSHGGPTSEARGILNL-SIQYWTS--RGWAFVDVNYGGS 535 (548)
Q Consensus 494 ~~Pliv~iHGGP~~~~~~~~~~-~~Q~~as--rGyaVl~~NyRGS 535 (548)
..|++|++||-........|.. ..+.|.. ..|.|+.+|.+|-
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~ 84 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSR 84 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCc
Confidence 3489999999764322223333 2233332 2699999999864
No 436
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=28.82 E-value=2.7e+02 Score=28.34 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=26.8
Q ss_pred CceEEEEEecCCCceeeeEEEcCCCCCcccCCcCce-E--CcCCc--EEEEEeCCCCeeeEEEEeccC
Q 008927 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK-W--SSKGE--LFFVTDRKNGFWNLHKWIESN 334 (548)
Q Consensus 272 ~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~-w--spDG~--L~~~sd~~~g~~~Ly~~d~~~ 334 (548)
...||++|++..|++.....+.... .....|. + ..||. .+|..|. .| +||++|+.+
T Consensus 180 ~~~lyi~d~~t~G~l~~~i~~~~~~----~gl~~~~~~D~d~DG~~D~vYaGDl-~G--nlwR~dl~~ 240 (335)
T PF05567_consen 180 GAALYILDADTTGALIKKIDVPGGS----GGLSSPAVVDSDGDGYVDRVYAGDL-GG--NLWRFDLSS 240 (335)
T ss_dssp -EEEEEEETTT---EEEEEEE--ST----T-EEEEEEE-TTSSSEE-EEEEEET-TS--EEEEEE--T
T ss_pred CcEEEEEECCCCCceEEEEecCCCC----ccccccEEEeccCCCeEEEEEEEcC-CC--cEEEEECCC
Confidence 4679999998526532222222222 1223333 2 34565 5566776 44 799999854
No 437
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=28.68 E-value=6e+02 Score=25.37 Aligned_cols=89 Identities=10% Similarity=-0.019 Sum_probs=48.5
Q ss_pred eeeEEECC-EEEEEe-CCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEE
Q 008927 148 GAFRIFGD-TVIFSN-YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (548)
Q Consensus 148 ~~~~~~~~-~i~F~~-~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~ 225 (548)
.+|+|..+ .++-.+ +..=++|-+.-.|. -.++..-... .-.-+..||.||..++.-.-+ .++-.
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-~~~ka~~~~~----~PvL~v~WsddgskVf~g~~D---------k~~k~ 98 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-LVPKAQQSHD----GPVLDVCWSDDGSKVFSGGCD---------KQAKL 98 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCc-ccchhhhccC----CCeEEEEEccCCceEEeeccC---------CceEE
Confidence 36777333 232232 22237887766531 3344333321 224567899999775443222 35677
Q ss_pred EECCCCCccCcEEeeecCCceeeeEECC
Q 008927 226 IALNGQNIQEPKVLVSGSDFYAFPRMDP 253 (548)
Q Consensus 226 idl~~g~~~~~~~L~~~~~~~~~p~~SP 253 (548)
+||.+++ ..++...++-+...+|=+
T Consensus 99 wDL~S~Q---~~~v~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 99 WDLASGQ---VSQVAAHDAPVKTCHWVP 123 (347)
T ss_pred EEccCCC---eeeeeecccceeEEEEec
Confidence 8999998 777765544444444433
No 438
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=28.49 E-value=50 Score=32.71 Aligned_cols=39 Identities=28% Similarity=0.346 Sum_probs=27.0
Q ss_pred CeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccC
Q 008927 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG 504 (548)
Q Consensus 461 pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGG 504 (548)
.+.+.|.+. =..+.-.++|.|.+ |.+ ..+||+|+..||=
T Consensus 69 ~~~~~~~~~-l~~~~~~vv~lppg--y~~--~~k~pvl~~~DG~ 107 (299)
T COG2382 69 VEEILYSSE-LLSERRRVVYLPPG--YNP--LEKYPVLYLQDGQ 107 (299)
T ss_pred hhhhhhhhh-hccceeEEEEeCCC--CCc--cccccEEEEeccH
Confidence 445555554 33456778888854 654 7899999999984
No 439
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=28.42 E-value=7.4e+02 Score=26.28 Aligned_cols=203 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeec----CCceeeeEECCCCCEEEEEEecCCCCCCCC---
Q 008927 200 PRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG----SDFYAFPRMDPRGERMAWIEWHHPNMPWDK--- 272 (548)
Q Consensus 200 pDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~----~~~~~~p~~SPDGk~La~~~~~~~~~p~~~--- 272 (548)
|+|+.++-...+..+. ....++.+|-++-+ .+---+. ..+-....|-|--+.++=.+|..|.+--.+
T Consensus 139 p~G~imIS~lGd~~G~---g~Ggf~llD~~tf~---v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~ 212 (461)
T PF05694_consen 139 PDGRIMISALGDADGN---GPGGFVLLDGETFE---VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNP 212 (461)
T ss_dssp SS--EEEEEEEETTS----S--EEEEE-TTT-----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---T
T ss_pred CCccEEEEeccCCCCC---CCCcEEEEcCcccc---ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCCh
Q ss_pred ---------ceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc--EEEE-EeCCCCeeeEEEEeccCCeeEee
Q 008927 273 ---------AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFV-TDRKNGFWNLHKWIESNNEVLAI 340 (548)
Q Consensus 273 ---------~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~--L~~~-sd~~~g~~~Ly~~d~~~g~~~~l 340 (548)
..|++.|+. ..++.+..-+..+. ....+.+|..|-+ --|+ +-..+..|.+|+-+-..-+.+.+
T Consensus 213 ~d~~~~~yG~~l~vWD~~-~r~~~Q~idLg~~g----~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kV 287 (461)
T PF05694_consen 213 EDLEAGKYGHSLHVWDWS-TRKLLQTIDLGEEG----QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKV 287 (461)
T ss_dssp TTHHHH-S--EEEEEETT-TTEEEEEEES-TTE----EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEE
T ss_pred hHhhcccccCeEEEEECC-CCcEeeEEecCCCC----CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEE
Q ss_pred cccccccCCCcccccC-----------cceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCc--------
Q 008927 341 YSLDAEFSRPLWVFGI-----------NSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT-------- 401 (548)
Q Consensus 341 ~~~~~d~~~p~w~~~~-----------~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~-------- 401 (548)
......-..+.-.... ..+..+. |++.||++.--.| .+..+|+.+-..-+|...-.
T Consensus 288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl---DDrfLYvs~W~~G--dvrqYDISDP~~Pkl~gqv~lGG~~~~~ 362 (461)
T PF05694_consen 288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISL---DDRFLYVSNWLHG--DVRQYDISDPFNPKLVGQVFLGGSIRKG 362 (461)
T ss_dssp EEE--EE--SS---GGGGGG-EE------EEE-T---TS-EEEEEETTTT--EEEEEE-SSTTS-EEEEEEE-BTTTT-B
T ss_pred EECCCcccCcccccccccccccCCCceEeEEEcc---CCCEEEEEcccCC--cEEEEecCCCCCCcEEeEEEECcEeccC
Q ss_pred --------------eeEeeeecCCEEEEEEe
Q 008927 402 --------------DIDNITLGNDCLFVEGA 418 (548)
Q Consensus 402 --------------~~~~~s~d~~~l~~~~s 418 (548)
.+-.+|.||++||++.|
T Consensus 363 ~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 363 DHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp --TTS------S----EEE-TTSSEEEEE--
T ss_pred CCccccccccCCCCCeEEEccCCeEEEEEee
No 440
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=27.68 E-value=7.5e+02 Score=26.13 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=39.8
Q ss_pred CcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEE
Q 008927 303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 382 (548)
Q Consensus 303 ~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~ 382 (548)
+..+.=+|+|.+++.... . .+||.+.+.+|+.-.+... .+ ....-..|+ +++..+++...||.-.
T Consensus 84 v~al~s~n~G~~l~ag~i-~--g~lYlWelssG~LL~v~~a--HY------Q~ITcL~fs----~dgs~iiTgskDg~V~ 148 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTI-S--GNLYLWELSSGILLNVLSA--HY------QSITCLKFS----DDGSHIITGSKDGAVL 148 (476)
T ss_pred eeeeecCCCceEEEeecc-c--CcEEEEEeccccHHHHHHh--hc------cceeEEEEe----CCCcEEEecCCCccEE
Confidence 455566788875555433 2 3788888889975333211 10 111123454 5666777887888766
Q ss_pred EEEE
Q 008927 383 LGIL 386 (548)
Q Consensus 383 L~~~ 386 (548)
+|.+
T Consensus 149 vW~l 152 (476)
T KOG0646|consen 149 VWLL 152 (476)
T ss_pred EEEE
Confidence 6643
No 441
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=26.81 E-value=7.6e+02 Score=25.91 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=55.6
Q ss_pred ceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEE-eC----C---CCeeeEEEEeccCCeeEeecccc
Q 008927 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT-DR----K---NGFWNLHKWIESNNEVLAIYSLD 344 (548)
Q Consensus 273 ~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~s-d~----~---~g~~~Ly~~d~~~g~~~~l~~~~ 344 (548)
++||.+++.. .+++.. .....+.. .+..+..--|.|.|++.. +- . .-+-++|++++.+.+.++|...
T Consensus 98 ndLy~Yn~k~-~eWkk~-~spn~P~p--Rsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~- 172 (521)
T KOG1230|consen 98 NDLYSYNTKK-NEWKKV-VSPNAPPP--RSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG- 172 (521)
T ss_pred eeeeEEeccc-cceeEe-ccCCCcCC--CccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC-
Confidence 3688888874 333211 11111111 344444445666644432 11 0 1234699999999988888532
Q ss_pred cccCCCcccccCcceeeeeecCCCCEEEEEEEeCC------eEEEEEEECCCCceEeecC
Q 008927 345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG------RSYLGILDDFGHSLSLLDI 398 (548)
Q Consensus 345 ~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g------~~~L~~~dl~~g~~~~l~~ 398 (548)
+.|.--.|-+-.+| ....|+|.--.+. ...||++|+++=++..|..
T Consensus 173 ---g~PS~RSGHRMvaw-----K~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 173 ---GGPSPRSGHRMVAW-----KRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred ---CCCCCCccceeEEe-----eeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence 11211111111112 2233444322211 2468899998878877754
No 442
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.73 E-value=6.1e+02 Score=24.81 Aligned_cols=84 Identities=15% Similarity=0.310 Sum_probs=45.7
Q ss_pred cCCcCceECcCCc-EEEEEeCCCCeeeEEE--Ee-------ccCCeeEeecccccccCCCcccccCcceeeeeecCCCCE
Q 008927 301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHK--WI-------ESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNL 370 (548)
Q Consensus 301 ~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~--~d-------~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~ 370 (548)
...+.++|-|||+ ++.+.|. |.|---+ .| +.+++++++.......-.-.|..+.-.++.. +++.
T Consensus 74 galSairf~~dG~~fiav~Dt--G~wfeg~i~rDa~grl~Gl~dgr~~pm~d~~Gqpi~~K~e~DaEGLAvr----dG~~ 147 (340)
T COG4246 74 GALSAIRFLPDGSQFIAVTDT--GHWFEGKIQRDANGRLAGLTDGRLTPMRDLDGQPIQEKWEVDAEGLAVR----DGDA 147 (340)
T ss_pred cchheeEeccCCceeEEEeec--CceEEEEEEeccCCCcccccccceeecccCCCCCCcchhccccccceEe----cCce
Confidence 3467789999997 8888875 4332111 12 2234445544322211122455444445554 5554
Q ss_pred EEEEEEeCCeEEEEEEECCCC
Q 008927 371 IACSYRQNGRSYLGILDDFGH 391 (548)
Q Consensus 371 l~~~~~~~g~~~L~~~dl~~g 391 (548)
+ ++.+++-+-.||.++...+
T Consensus 148 ~-VsfEr~hRI~iyp~~p~~~ 167 (340)
T COG4246 148 L-VSFERDHRIWIYPVPPFAG 167 (340)
T ss_pred E-EEeeccceeEEeccCCccC
Confidence 4 4666777777887776544
No 443
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.67 E-value=92 Score=26.71 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=33.4
Q ss_pred CCcCCHHHHhcCCCccCceEEcC-CCcEEEEEecCCCCCceEEEEcCCC
Q 008927 76 KSPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAK 123 (548)
Q Consensus 76 ~spit~~~l~~~~~~~~~~~~sp-g~~i~~~~~~~~e~gr~~l~~~~~~ 123 (548)
..|||+|++... -.+..+.+.| |..-||-..-.-=-|.+.|..++.+
T Consensus 99 e~~iTpE~fk~R-m~Le~v~~~pdGe~efyy~DGdLF~GH~Ilis~D~n 146 (156)
T COG4296 99 EQPITPESFKER-MALENVMLYPDGEAEFYYSDGDLFAGHVILISVDEN 146 (156)
T ss_pred CCccCHHHHHHH-hhhhceEeccCCcEEEEecCCCeEeeeEEEEEEcCC
Confidence 569999999886 7889999999 8877776521111356666666544
No 444
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=26.63 E-value=7.4e+02 Score=27.32 Aligned_cols=118 Identities=11% Similarity=0.155 Sum_probs=69.0
Q ss_pred cCCcEEEEEeCC---CCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCe---EEE
Q 008927 310 SKGELFFVTDRK---NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR---SYL 383 (548)
Q Consensus 310 pDG~L~~~sd~~---~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~---~~L 383 (548)
-+|+||.+--.. .....++++|+.++++..+.+.. .+....+ .... ++.||...-.+|. ..+
T Consensus 331 ~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~----~~R~~~~---v~~l-----~g~iYavGG~dg~~~l~sv 398 (571)
T KOG4441|consen 331 LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN----TKRSDFG---VAVL-----DGKLYAVGGFDGEKSLNSV 398 (571)
T ss_pred ECCEEEEEccccCCCcccceEEEecCCCCceeccCCcc----Cccccce---eEEE-----CCEEEEEeccccccccccE
Confidence 456677774331 22356899999888887765431 1122111 1222 4567766554443 346
Q ss_pred EEEECCCCceEeecCCCceeE--eeeecCCEEEEEEecCC---CCCeEEEEEcCCCceeee
Q 008927 384 GILDDFGHSLSLLDIPFTDID--NITLGNDCLFVEGASGV---EPSSVAKVTLDDHKLKAV 439 (548)
Q Consensus 384 ~~~dl~~g~~~~l~~~~~~~~--~~s~d~~~l~~~~ss~~---~p~~l~~~d~~~~~~~~~ 439 (548)
.++|+.+.+++.+..-..... ++..-++.||+++.... .-..+..+|+.+++.+.+
T Consensus 399 E~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 399 ECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred EEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 788999888887763211111 22455677887776433 336788999988876443
No 445
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.35 E-value=5.6e+02 Score=24.27 Aligned_cols=111 Identities=10% Similarity=0.066 Sum_probs=52.8
Q ss_pred CCCEEEEEEEeCCeEEEEEEECCCCc---eEeecCCCceeEee----eecCCEEEEEEecCCCCCeEEEEEcCCCceeee
Q 008927 367 EKNLIACSYRQNGRSYLGILDDFGHS---LSLLDIPFTDIDNI----TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (548)
Q Consensus 367 d~~~l~~~~~~~g~~~L~~~dl~~g~---~~~l~~~~~~~~~~----s~d~~~l~~~~ss~~~p~~l~~~d~~~~~~~~~ 439 (548)
|++.|+. .+|..-|+..|+++=+ ..+++....-++-+ -.||..++=+.. ...|.++++++|++.
T Consensus 139 d~~~Lim---sdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~----t~~I~rI~p~sGrV~-- 209 (262)
T COG3823 139 DDKNLIM---SDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQ----TTRIARIDPDSGRVV-- 209 (262)
T ss_pred CCcceEe---eCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeee----ecceEEEcCCCCcEE--
Confidence 5555442 3677788888875422 12333222222222 234433222222 357889999999752
Q ss_pred eeEEEecCCCCCCccCCCccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEE
Q 008927 440 DFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKS 501 (548)
Q Consensus 440 ~~~~~l~~~~~~~l~~~~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~i 501 (548)
..+.-+. .+.+ ...... ....+.|+-|.|....|- -.||.+|.++.|
T Consensus 210 ---~widlS~--L~~~--------~~~~~~-~~nvlNGIA~~~~~~r~~-iTGK~wp~lfEV 256 (262)
T COG3823 210 ---AWIDLSG--LLKE--------LNLDKS-NDNVLNGIAHDPQQDRFL-ITGKLWPLLFEV 256 (262)
T ss_pred ---EEEEccC--Cchh--------cCcccc-ccccccceeecCcCCeEE-EecCcCceeEEE
Confidence 1111111 0011 111111 122467777777431111 137889998875
No 446
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=25.98 E-value=1.2e+02 Score=30.49 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=33.0
Q ss_pred CceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEEeCCCCeeeEEEEec
Q 008927 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 332 (548)
Q Consensus 272 ~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~sd~~~g~~~Ly~~d~ 332 (548)
...+|+.|++....... ..++..... ..+.+..+|.||. |+++.|. ..+|++|.
T Consensus 328 ~g~v~vwdL~~~ep~~~-ttl~~s~~~--~tVRQ~sfS~dgs~lv~vcdd----~~Vwrwdr 382 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKC-TTLTHSKSG--STVRQTSFSRDGSILVLVCDD----GTVWRWDR 382 (385)
T ss_pred CCcEEEEECCCCCCccC-ceEEecccc--ceeeeeeecccCcEEEEEeCC----CcEEEEEe
Confidence 46899999985433111 222222112 4578899999999 7777765 24666663
No 447
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.49 E-value=7e+02 Score=25.08 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=71.9
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCC--EEEEEEeccCCCCCCceeEEEEE
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFN--RYVTVREDRRQDALNSTTEIVAI 226 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~--~i~~v~~~~~~~~~~~~~~l~~i 226 (548)
+.++++..++=. ..|..|+++|+... .+...|... ...+..+.|.++-. +|+.-++++ .|.++
T Consensus 48 avAVs~~~~aSG-ssDetI~IYDm~k~-~qlg~ll~H----agsitaL~F~~~~S~shLlS~sdDG---------~i~iw 112 (362)
T KOG0294|consen 48 ALAVSGPYVASG-SSDETIHIYDMRKR-KQLGILLSH----AGSITALKFYPPLSKSHLLSGSDDG---------HIIIW 112 (362)
T ss_pred EEEecceeEecc-CCCCcEEEEeccch-hhhcceecc----ccceEEEEecCCcchhheeeecCCC---------cEEEE
Confidence 445555444432 24567888888652 233333332 23455666777653 444433332 45555
Q ss_pred ECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCc
Q 008927 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (548)
Q Consensus 227 dl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~ 306 (548)
+...-+. ..-+......+....+.|.|| ||..... ...|.+.++-. |...-...+.. .....
T Consensus 113 ~~~~W~~--~~slK~H~~~Vt~lsiHPS~K-LALsVg~-------D~~lr~WNLV~-Gr~a~v~~L~~-------~at~v 174 (362)
T KOG0294|consen 113 RVGSWEL--LKSLKAHKGQVTDLSIHPSGK-LALSVGG-------DQVLRTWNLVR-GRVAFVLNLKN-------KATLV 174 (362)
T ss_pred EcCCeEE--eeeecccccccceeEecCCCc-eEEEEcC-------Cceeeeehhhc-CccceeeccCC-------cceee
Confidence 5443221 222333333466778899888 6644321 22344445542 33111112222 22347
Q ss_pred eECcCCcEEEEEeCCCCeeeEEEEe
Q 008927 307 KWSSKGELFFVTDRKNGFWNLHKWI 331 (548)
Q Consensus 307 ~wspDG~L~~~sd~~~g~~~Ly~~d 331 (548)
.|+|.|..+++.-+ ..-.+|..+
T Consensus 175 ~w~~~Gd~F~v~~~--~~i~i~q~d 197 (362)
T KOG0294|consen 175 SWSPQGDHFVVSGR--NKIDIYQLD 197 (362)
T ss_pred EEcCCCCEEEEEec--cEEEEEecc
Confidence 89999994444322 224556554
No 448
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=25.33 E-value=5.9e+02 Score=24.67 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=0.0
Q ss_pred cccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCCceEeecCCCce-eEee--eecCCEEEEEEecCCCCCeEEEE
Q 008927 353 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD-IDNI--TLGNDCLFVEGASGVEPSSVAKV 429 (548)
Q Consensus 353 ~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g~~~~l~~~~~~-~~~~--s~d~~~l~~~~ss~~~p~~l~~~ 429 (548)
++..+.....| ..+.|++.. |...+|.+|+++|+++..-.+.++ +..+ ...+..++--+.. +.+.+.
T Consensus 114 vPeINam~ldP---~enSi~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~ED----GtvRvW 183 (325)
T KOG0649|consen 114 VPEINAMWLDP---SENSILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAED----GTVRVW 183 (325)
T ss_pred CCccceeEecc---CCCcEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCC----ccEEEE
Q ss_pred EcCCCceeeeeeEEEecCCCCCCccCCCccC
Q 008927 430 TLDDHKLKAVDFKVVWSSSPDTLKYKSYFSL 460 (548)
Q Consensus 430 d~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 460 (548)
|.++++- +..+....++.+..-.+++
T Consensus 184 d~kt~k~-----v~~ie~yk~~~~lRp~~g~ 209 (325)
T KOG0649|consen 184 DTKTQKH-----VSMIEPYKNPNLLRPDWGK 209 (325)
T ss_pred eccccce-----eEEeccccChhhcCcccCc
No 449
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=25.15 E-value=63 Score=40.55 Aligned_cols=39 Identities=8% Similarity=0.027 Sum_probs=29.1
Q ss_pred CCcEEEEEccCccccccCccChHHHHHHhcCcEEEEeCCCCC
Q 008927 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (548)
Q Consensus 494 ~~Pliv~iHGGP~~~~~~~~~~~~Q~~asrGyaVl~~NyRGS 535 (548)
..|.||++||.+.... .|...+..|. .+|-|+.+|+||-
T Consensus 1370 ~~~~vVllHG~~~s~~--~w~~~~~~L~-~~~rVi~~Dl~G~ 1408 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTGE--DWIPIMKAIS-GSARCISIDLPGH 1408 (1655)
T ss_pred CCCeEEEECCCCCCHH--HHHHHHHHHh-CCCEEEEEcCCCC
Confidence 3478999999887654 3555555564 5699999999984
No 450
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=24.91 E-value=1.8e+02 Score=28.65 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=33.8
Q ss_pred eCCeEEEEEEECCCCceEeecCC---CceeEee-eecCCEEEEEEe----cCCCCCeEEEEEc
Q 008927 377 QNGRSYLGILDDFGHSLSLLDIP---FTDIDNI-TLGNDCLFVEGA----SGVEPSSVAKVTL 431 (548)
Q Consensus 377 ~~g~~~L~~~dl~~g~~~~l~~~---~~~~~~~-s~d~~~l~~~~s----s~~~p~~l~~~d~ 431 (548)
.+...++|++|++.|--..-+.| .+.--.+ -..++.+||++. +..+|+.||++..
T Consensus 127 vDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkV 189 (337)
T PF03089_consen 127 VDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKV 189 (337)
T ss_pred ccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEE
Confidence 36678999999999854433222 1111112 245667888763 3568999997753
No 451
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=24.36 E-value=30 Score=14.51 Aligned_cols=7 Identities=43% Similarity=0.710 Sum_probs=3.6
Q ss_pred EccCccc
Q 008927 501 SHGGPTS 507 (548)
Q Consensus 501 iHGGP~~ 507 (548)
+|||-++
T Consensus 1 phgG~Wg 7 (8)
T PF03991_consen 1 PHGGGWG 7 (8)
T ss_pred CCCCcCC
Confidence 3666443
No 452
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=24.29 E-value=1.8e+02 Score=29.26 Aligned_cols=68 Identities=15% Similarity=0.293 Sum_probs=44.6
Q ss_pred CccCCeEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEcc-CccccccCccChHHHHHHhcCcEEEEeCCC
Q 008927 457 YFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG-GPTSEARGILNLSIQYWTSRGWAFVDVNYG 533 (548)
Q Consensus 457 ~~~~pe~i~~~s~~dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHG-GP~~~~~~~~~~~~Q~~asrGyaVl~~NyR 533 (548)
.+..-|.++... ++.++-+ ||.|.+ .++..-+||.+|| |-+.-+.....+..+.|..+||+.+.+..-
T Consensus 58 ~lp~~e~~~L~~--~~~~fla-L~~~~~------~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P 126 (310)
T PF12048_consen 58 YLPADEVQWLQA--GEERFLA-LWRPAN------SAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLP 126 (310)
T ss_pred hCCHhhcEEeec--CCEEEEE-EEeccc------CCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCC
Confidence 343345566665 4555544 455543 1456789999999 655555455567778899999999987654
No 453
>KOG4037 consensus Photoreceptor synaptic vesicle protein HRG4/UNC-119 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=24.18 E-value=1.7e+02 Score=26.43 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=21.4
Q ss_pred CCCcCCHHHHhcCCCccCceEEcCCCcEEEE
Q 008927 75 WKSPLTADVVSGASKRLGGTAVDGHGRLIWL 105 (548)
Q Consensus 75 w~spit~~~l~~~~~~~~~~~~spg~~i~~~ 105 (548)
-++|||++++..+.+-..+.-+||...||=+
T Consensus 56 ~~~~itP~dVL~L~~IT~dyLCSp~aNvy~I 86 (240)
T KOG4037|consen 56 RKQPITPEDVLGLQRITGDYLCSPEANVYKI 86 (240)
T ss_pred ccCCCChHHhhccccccCCceeCcccceEEe
Confidence 3779999999999444445555656666644
No 454
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=24.12 E-value=8.4e+02 Score=26.90 Aligned_cols=115 Identities=11% Similarity=0.086 Sum_probs=64.8
Q ss_pred cCCcEEEEEeCCCC---eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCC---eEEE
Q 008927 310 SKGELFFVTDRKNG---FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---RSYL 383 (548)
Q Consensus 310 pDG~L~~~sd~~~g---~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g---~~~L 383 (548)
-+|+||.+.-.... ...+..+|+.+++++.+.+... +....+ .+. -++.||+..-.++ ...+
T Consensus 426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~----~R~~~g---~a~-----~~~~iYvvGG~~~~~~~~~V 493 (571)
T KOG4441|consen 426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT----RRSGFG---VAV-----LNGKIYVVGGFDGTSALSSV 493 (571)
T ss_pred ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc----ccccce---EEE-----ECCEEEEECCccCCCccceE
Confidence 36778877433111 2457889999999887765311 111111 222 2567776654333 3347
Q ss_pred EEEECCCCceEeecCCCc--eeEeeeecCCEEEEEEecC--CCCCeEEEEEcCCCce
Q 008927 384 GILDDFGHSLSLLDIPFT--DIDNITLGNDCLFVEGASG--VEPSSVAKVTLDDHKL 436 (548)
Q Consensus 384 ~~~dl~~g~~~~l~~~~~--~~~~~s~d~~~l~~~~ss~--~~p~~l~~~d~~~~~~ 436 (548)
.++|+++.+++.+..-.. ...++...++.+|+++... ..-..+-.+|+.+.+.
T Consensus 494 E~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 494 ERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred EEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCce
Confidence 789999999998853211 1223355677777777532 2234455556666554
No 455
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=23.84 E-value=1.4e+02 Score=19.26 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=14.6
Q ss_pred EEECCEEEEEeCCCCeEEEEeCC
Q 008927 151 RIFGDTVIFSNYKDQRLYKHSID 173 (548)
Q Consensus 151 ~~~~~~i~F~~~~~~~Ly~~~~~ 173 (548)
...++.|++. ..+++||.+|++
T Consensus 18 ~v~~g~vyv~-~~dg~l~ald~~ 39 (40)
T PF13570_consen 18 AVAGGRVYVG-TGDGNLYALDAA 39 (40)
T ss_dssp EECTSEEEEE--TTSEEEEEETT
T ss_pred EEECCEEEEE-cCCCEEEEEeCC
Confidence 3456665554 467899999875
No 456
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=23.82 E-value=64 Score=33.53 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=34.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCcEEEEEccCccccccCccC-----------------hHHHHHHhcCcEEEEeCCC
Q 008927 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-----------------LSIQYWTSRGWAFVDVNYG 533 (548)
Q Consensus 471 dG~~i~g~l~~P~~~~~~~~~~~~~Pliv~iHGGP~~~~~~~~~-----------------~~~Q~~asrGyaVl~~NyR 533 (548)
.+..++-|++.-.+ + .+..|+|+...|||.+....++. ....-|... .-||.+|-=
T Consensus 22 ~~~~lfyw~~~s~~---~---~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an~l~iD~P 94 (415)
T PF00450_consen 22 ENAHLFYWFFESRN---D---PEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKF-ANLLFIDQP 94 (415)
T ss_dssp TTEEEEEEEEE-SS---G---GCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SEEEEE--S
T ss_pred CCcEEEEEEEEeCC---C---CCCccEEEEecCCceeccccccccccCceEEeecccccccccccccccc-cceEEEeec
Confidence 56678888886643 1 35669999999999876543211 112334444 677888855
Q ss_pred CCCCCCh
Q 008927 534 GSTGLSS 540 (548)
Q Consensus 534 GStGyG~ 540 (548)
-+|||..
T Consensus 95 vGtGfS~ 101 (415)
T PF00450_consen 95 VGTGFSY 101 (415)
T ss_dssp TTSTT-E
T ss_pred CceEEee
Confidence 6677764
No 457
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=23.75 E-value=7.4e+02 Score=24.74 Aligned_cols=79 Identities=9% Similarity=0.166 Sum_probs=46.8
Q ss_pred CCceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCcEEEEEeCCC
Q 008927 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (548)
Q Consensus 243 ~~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~L~~~sd~~~ 322 (548)
.+.++...|||.+..|+..+|+ ..|.+++++.. .+ ...+.. . ..+....|.++.+++ +.+. +
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWD--------gslrlYdv~~~-~l--~~~~~~-~----~plL~c~F~d~~~~~-~G~~-d 74 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWD--------GSLRLYDVPAN-SL--KLKFKH-G----APLLDCAFADESTIV-TGGL-D 74 (323)
T ss_pred hhceeeEEEcCcCCcEEEEecc--------CcEEEEeccch-hh--hhheec-C----CceeeeeccCCceEE-Eecc-C
Confidence 3557788999998888877765 35777777643 21 111222 1 345556777655444 3333 3
Q ss_pred CeeeEEEEeccCCeeEeec
Q 008927 323 GFWNLHKWIESNNEVLAIY 341 (548)
Q Consensus 323 g~~~Ly~~d~~~g~~~~l~ 341 (548)
| .|-++|+.+++...|-
T Consensus 75 g--~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 75 G--QVRRYDLNTGNEDQIG 91 (323)
T ss_pred c--eEEEEEecCCcceeec
Confidence 3 5777888777765553
No 458
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=22.68 E-value=6.7e+02 Score=23.83 Aligned_cols=85 Identities=18% Similarity=0.103 Sum_probs=39.8
Q ss_pred cCCcCceECcCCcEEEEEeCCCCeeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCe
Q 008927 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (548)
Q Consensus 301 ~~~~~~~wspDG~L~~~sd~~~g~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~ 380 (548)
.++.-..|||+|+|+..... +..-.+..++.++.+ ++..+-++.. ..-......|+..++.+..|+.+. -.|.
T Consensus 90 gsiyc~~ws~~geliatgsn-dk~ik~l~fn~dt~~---~~g~dle~nm--hdgtirdl~fld~~~s~~~il~s~-gagd 162 (350)
T KOG0641|consen 90 GSIYCTAWSPCGELIATGSN-DKTIKVLPFNADTCN---ATGHDLEFNM--HDGTIRDLAFLDDPESGGAILASA-GAGD 162 (350)
T ss_pred ccEEEEEecCccCeEEecCC-CceEEEEeccccccc---ccCcceeeee--cCCceeeeEEecCCCcCceEEEec-CCCc
Confidence 56667789999996665322 233344444443322 2211111110 000011233332112345565443 2467
Q ss_pred EEEEEEECCCCc
Q 008927 381 SYLGILDDFGHS 392 (548)
Q Consensus 381 ~~L~~~dl~~g~ 392 (548)
..||.-|-..|.
T Consensus 163 c~iy~tdc~~g~ 174 (350)
T KOG0641|consen 163 CKIYITDCGRGQ 174 (350)
T ss_pred ceEEEeecCCCC
Confidence 788888876664
No 459
>PLN02153 epithiospecifier protein
Probab=22.55 E-value=7.9e+02 Score=24.64 Aligned_cols=199 Identities=6% Similarity=0.061 Sum_probs=0.0
Q ss_pred eEEEEEECCCCCccCcEEeeecC-----CceeeeEECCCCCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcC-
Q 008927 221 TEIVAIALNGQNIQEPKVLVSGS-----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG- 294 (548)
Q Consensus 221 ~~l~~idl~~g~~~~~~~L~~~~-----~~~~~p~~SPDGk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~- 294 (548)
+++|++|+.+.+ -+.+.... .....-...=+++-++|-..+... ...+++++|.. ..++.....+..
T Consensus 50 ~~~~~yd~~~~~---W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~---~~~~v~~yd~~-t~~W~~~~~~~~~ 122 (341)
T PLN02153 50 KDLYVFDFNTHT---WSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR---EFSDFYSYDTV-KNEWTFLTKLDEE 122 (341)
T ss_pred CcEEEEECCCCE---EEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC---ccCcEEEEECC-CCEEEEeccCCCC
Q ss_pred --CCCCcccCCcCceECcCCcEEEEEeCCCC--------eeeEEEEeccCCeeEeecccccccCCCcccccCcceeeeee
Q 008927 295 --FDPTIVESPTEPKWSSKGELFFVTDRKNG--------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQS 364 (548)
Q Consensus 295 --~~~~~~~~~~~~~wspDG~L~~~sd~~~g--------~~~Ly~~d~~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~ 364 (548)
.. .....-...-+++||++--...+ ...|+.+|+++.+.+.+... ..+.-..........
T Consensus 123 ~~p~----~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~----~~~~~~r~~~~~~~~-- 192 (341)
T PLN02153 123 GGPE----ARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDP----GENFEKRGGAGFAVV-- 192 (341)
T ss_pred CCCC----CceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCC----CCCCCCCCcceEEEE--
Q ss_pred cCCCCEEEEEEEeCCe-----------EEEEEEECCCCceEeecC------CCceeEeeeecCCEEEEEEe---------
Q 008927 365 HGEKNLIACSYRQNGR-----------SYLGILDDFGHSLSLLDI------PFTDIDNITLGNDCLFVEGA--------- 418 (548)
Q Consensus 365 ~~d~~~l~~~~~~~g~-----------~~L~~~dl~~g~~~~l~~------~~~~~~~~s~d~~~l~~~~s--------- 418 (548)
++.||+..-.... ..++++|+++.+++.+.. +.........+++-++|-+.
T Consensus 193 ---~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 269 (341)
T PLN02153 193 ---QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHL 269 (341)
T ss_pred ---CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccccc
Q ss_pred -cCCCCCeEEEEEcCCCceeee
Q 008927 419 -SGVEPSSVAKVTLDDHKLKAV 439 (548)
Q Consensus 419 -s~~~p~~l~~~d~~~~~~~~~ 439 (548)
......++|.+|+++.+.+.+
T Consensus 270 ~~~~~~n~v~~~d~~~~~W~~~ 291 (341)
T PLN02153 270 GPGTLSNEGYALDTETLVWEKL 291 (341)
T ss_pred ccccccccEEEEEcCccEEEec
No 460
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.31 E-value=2.8e+02 Score=30.46 Aligned_cols=59 Identities=19% Similarity=0.105 Sum_probs=0.0
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEEC
Q 008927 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (548)
Q Consensus 149 ~~~~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl 228 (548)
++....+.|+-..-.-++||.++..+ ..++ +.++|-|||+.|++--++. .|...|+
T Consensus 36 A~~t~~gelli~R~n~qRlwtip~p~--------------~~v~-~sL~W~~DGkllaVg~kdG---------~I~L~Dv 91 (665)
T KOG4640|consen 36 ATRTEKGELLIHRLNWQRLWTIPIPG--------------ENVT-ASLCWRPDGKLLAVGFKDG---------TIRLHDV 91 (665)
T ss_pred heeccCCcEEEEEeccceeEeccCCC--------------Cccc-eeeeecCCCCEEEEEecCC---------eEEEEEc
Q ss_pred CCC
Q 008927 229 NGQ 231 (548)
Q Consensus 229 ~~g 231 (548)
++|
T Consensus 92 e~~ 94 (665)
T KOG4640|consen 92 EKG 94 (665)
T ss_pred cCC
No 461
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=22.21 E-value=7.9e+02 Score=24.49 Aligned_cols=104 Identities=9% Similarity=0.002 Sum_probs=56.5
Q ss_pred eecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCc-ee--eeEECC-CCCEEEEEEecCCC
Q 008927 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF-YA--FPRMDP-RGERMAWIEWHHPN 267 (548)
Q Consensus 192 ~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~-~~--~p~~SP-DGk~La~~~~~~~~ 267 (548)
.+-|.+|+.+|..++... .. ...+-..||..-+. .+++.+++.- .. -..|++ |=+++|-+.
T Consensus 198 EV~DIaf~~~s~~~FASv-ga-------DGSvRmFDLR~leH--STIIYE~p~~~~pLlRLswnkqDpnymATf~----- 262 (364)
T KOG0290|consen 198 EVYDIAFLKGSRDVFASV-GA-------DGSVRMFDLRSLEH--STIIYEDPSPSTPLLRLSWNKQDPNYMATFA----- 262 (364)
T ss_pred ceeEEEeccCccceEEEe-cC-------CCcEEEEEeccccc--ceEEecCCCCCCcceeeccCcCCchHHhhhh-----
Confidence 356778998777654432 21 13577778887652 3556655431 11 112222 111222111
Q ss_pred CCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECcCCc-EEEEE
Q 008927 268 MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (548)
Q Consensus 268 ~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wspDG~-L~~~s 318 (548)
.+..++.++|+.-... ....+.+.. .++....|.|... -++..
T Consensus 263 --~dS~~V~iLDiR~P~t--pva~L~~H~----a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 263 --MDSNKVVILDIRVPCT--PVARLRNHQ----ASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred --cCCceEEEEEecCCCc--ceehhhcCc----ccccceEecCCCCceeeec
Confidence 1457888999875443 223344433 6788999999877 55553
No 462
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=22.03 E-value=1.4e+03 Score=27.44 Aligned_cols=52 Identities=2% Similarity=-0.118 Sum_probs=30.4
Q ss_pred EECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEe
Q 008927 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRE 210 (548)
Q Consensus 152 ~~~~~i~F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~ 210 (548)
.++..|++.. ..|.|..+++.. ....-+..- ...+....||||++.++++..
T Consensus 78 ~d~~~i~v~~-~~G~iilvd~et--~~~eivg~v----d~GI~aaswS~Dee~l~liT~ 129 (1265)
T KOG1920|consen 78 ADTNSICVIT-ALGDIILVDPET--LELEIVGNV----DNGISAASWSPDEELLALITG 129 (1265)
T ss_pred cccceEEEEe-cCCcEEEEcccc--cceeeeeec----cCceEEEeecCCCcEEEEEeC
Confidence 3444555543 456677777654 333333322 124556689999999888743
No 463
>PRK14683 hypothetical protein; Provisional
Probab=21.72 E-value=89 Score=26.66 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=19.1
Q ss_pred hHHHHHHhcCcEEEEeCCCCCCC
Q 008927 515 LSIQYWTSRGWAFVDVNYGGSTG 537 (548)
Q Consensus 515 ~~~Q~~asrGyaVl~~NyRGStG 537 (548)
.-.+||.++||-++.-|+|...|
T Consensus 22 ~A~~~L~~~Gy~Il~rN~r~~~G 44 (122)
T PRK14683 22 LIILFLKCKLYHIIKHRYRCPLG 44 (122)
T ss_pred HHHHHHHHCCCEEEeeecCCCCC
Confidence 34679999999999999997543
No 464
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=21.15 E-value=5.8e+02 Score=25.78 Aligned_cols=79 Identities=14% Similarity=0.039 Sum_probs=48.5
Q ss_pred CCCeEEEEeCCCCCCCc-eecCCCCCCCCceecceeeCCCCCEEEE-EEeccCCCCCCceeEEEEEECCCCCccCcEEee
Q 008927 163 KDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVT-VREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240 (548)
Q Consensus 163 ~~~~Ly~~~~~~~~~~~-~~lT~~~~~~~~~~~~~~~SpDG~~i~~-v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~ 240 (548)
.-|.|+++++.. ++. ..+-.. +..+.++.+-|+...++. .++|+ .|-++|+.+.. -..+.
T Consensus 113 ~~GvIrVid~~~--~~~~~~~~gh----G~sINeik~~p~~~qlvls~SkD~---------svRlwnI~~~~---Cv~Vf 174 (385)
T KOG1034|consen 113 YLGVIRVIDVVS--GQCSKNYRGH----GGSINEIKFHPDRPQLVLSASKDH---------SVRLWNIQTDV---CVAVF 174 (385)
T ss_pred ceeEEEEEecch--hhhccceecc----CccchhhhcCCCCCcEEEEecCCc---------eEEEEeccCCe---EEEEe
Confidence 457899999865 322 222221 234667788888755544 44443 56677888776 44444
Q ss_pred ec----CCceeeeEECCCCCEEE
Q 008927 241 SG----SDFYAFPRMDPRGERMA 259 (548)
Q Consensus 241 ~~----~~~~~~p~~SPDGk~La 259 (548)
.| .+.+-...||+||.+|+
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ 197 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIA 197 (385)
T ss_pred cccccccCcEEEEEEcCCCCeee
Confidence 33 23355678999999887
No 465
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=20.98 E-value=2.6e+02 Score=31.97 Aligned_cols=82 Identities=10% Similarity=-0.020 Sum_probs=42.0
Q ss_pred EEeCCCCeEEEEeCCCCCCCceecCCCCCCCCceecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEE
Q 008927 159 FSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV 238 (548)
Q Consensus 159 F~~~~~~~Ly~~~~~~~~~~~~~lT~~~~~~~~~~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~ 238 (548)
|+-.+.|.+-++ +++ |+|++-..- +++..++.|.|. +.++++-..+ ..+-+....+.+ ...
T Consensus 35 fS~er~GSVtIf-adt--GEPqr~Vt~----P~hatSLCWHpe-~~vLa~gwe~--------g~~~v~~~~~~e---~ht 95 (1416)
T KOG3617|consen 35 FSPERGGSVTIF-ADT--GEPQRDVTY----PVHATSLCWHPE-EFVLAQGWEM--------GVSDVQKTNTTE---THT 95 (1416)
T ss_pred ecCCCCceEEEE-ecC--CCCCccccc----ceehhhhccChH-HHHHhhcccc--------ceeEEEecCCce---eee
Confidence 333444544444 455 677543332 467888999996 4445543222 123333333333 222
Q ss_pred e-eecCCceeeeEECCCCCEEE
Q 008927 239 L-VSGSDFYAFPRMDPRGERMA 259 (548)
Q Consensus 239 L-~~~~~~~~~p~~SPDGk~La 259 (548)
+ ...+--.....|||||..|.
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~ 117 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLM 117 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEE
Confidence 2 11222245668999999875
No 466
>PRK09767 hypothetical protein; Provisional
Probab=20.78 E-value=92 Score=26.33 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=26.7
Q ss_pred CCCcEEEEEccCccccccCccCh-HHHHHHhcCcEEEEe
Q 008927 493 EKPPLLVKSHGGPTSEARGILNL-SIQYWTSRGWAFVDV 530 (548)
Q Consensus 493 ~~~Pliv~iHGGP~~~~~~~~~~-~~Q~~asrGyaVl~~ 530 (548)
..+-++|.+.||.|... ...+. ..++|.+.||.|+-.
T Consensus 53 ~~~rLaIE~DG~~H~~~-~~~D~~R~~~L~~~G~~VlRf 90 (117)
T PRK09767 53 CSARVVVELDGGQHDLA-VAYDTRRTSWLESQGWTVLRF 90 (117)
T ss_pred cccCEEEEEeCcccchh-HHHHHHHHHHHHHCCCEEEEE
Confidence 35689999999988432 23333 357889999999975
No 467
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.61 E-value=7.9e+02 Score=23.88 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=58.9
Q ss_pred CCEEEEEEecCCCCCCCCceEEEEEecCCCceeeeEEEcCCCCCcccCCcCceECc--CCcEEEEEeCCCCeeeEEEEec
Q 008927 255 GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGELFFVTDRKNGFWNLHKWIE 332 (548)
Q Consensus 255 Gk~La~~~~~~~~~p~~~~~L~v~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~wsp--DG~L~~~sd~~~g~~~Ly~~d~ 332 (548)
|++||-.+.+ ..+-+..+..++.......|.+.. +.+.+..|.. -|.|+..+.. +|.--|| .-
T Consensus 23 gkrlATcsSD--------~tVkIf~v~~n~~s~ll~~L~Gh~----GPVwqv~wahPk~G~iLAScsY-DgkVIiW--ke 87 (299)
T KOG1332|consen 23 GKRLATCSSD--------GTVKIFEVRNNGQSKLLAELTGHS----GPVWKVAWAHPKFGTILASCSY-DGKVIIW--KE 87 (299)
T ss_pred cceeeeecCC--------ccEEEEEEcCCCCceeeeEecCCC----CCeeEEeecccccCcEeeEeec-CceEEEE--ec
Confidence 8888854422 235666666545322233455543 5677788865 4776666554 4433343 34
Q ss_pred cCCeeEeecccccccCCCcccccCcceeeeeecCCCCEEEEEEEeCCeEEEEEEECCCC
Q 008927 333 SNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (548)
Q Consensus 333 ~~g~~~~l~~~~~d~~~p~w~~~~~~~~~~~~~~d~~~l~~~~~~~g~~~L~~~dl~~g 391 (548)
++|...++..- . ......+..+|.| + +-+.+++.+..+|.-.+..++-+++
T Consensus 88 ~~g~w~k~~e~----~--~h~~SVNsV~wap-h-eygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 88 ENGRWTKAYEH----A--AHSASVNSVAWAP-H-EYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred CCCchhhhhhh----h--hhcccceeecccc-c-ccceEEEEeeCCCcEEEEEEcCCCC
Confidence 45654444310 0 0011122223332 0 3345666677788888888876633
No 468
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=20.56 E-value=2.5e+02 Score=30.76 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=44.5
Q ss_pred ecceeeCCCCCEEEEEEeccCCCCCCceeEEEEEECCCCCccCcEEeeecCCceeeeEECCCCCEEEEEEecCCCCCCCC
Q 008927 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (548)
Q Consensus 193 ~~~~~~SpDG~~i~~v~~~~~~~~~~~~~~l~~idl~~g~~~~~~~L~~~~~~~~~p~~SPDGk~La~~~~~~~~~p~~~ 272 (548)
+.+.+|||-.-.|+++.... ..|.++||......+...+.-.......-+|+++|+.|+ +. + .+
T Consensus 444 v~~vaWSptrpavF~~~d~~--------G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~la-vG-d------~~ 507 (555)
T KOG1587|consen 444 VTDVAWSPTRPAVFATVDGD--------GNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLA-VG-D------AN 507 (555)
T ss_pred eeeeEEcCcCceEEEEEcCC--------CceehhhhhccccCCcccccccccccceeecCCCCcEEE-Ee-c------CC
Confidence 66789999988877764322 467788886554111111111122334557999999887 44 2 25
Q ss_pred ceEEEEEec
Q 008927 273 AELWVGYIS 281 (548)
Q Consensus 273 ~~L~v~~~~ 281 (548)
+.++++++.
T Consensus 508 G~~~~~~l~ 516 (555)
T KOG1587|consen 508 GTTHILKLS 516 (555)
T ss_pred CcEEEEEcC
Confidence 678888885
No 469
>PRK14676 hypothetical protein; Provisional
Probab=20.52 E-value=98 Score=26.18 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=17.9
Q ss_pred HHHHHHhcCcEEEEeCCCCCC
Q 008927 516 SIQYWTSRGWAFVDVNYGGST 536 (548)
Q Consensus 516 ~~Q~~asrGyaVl~~NyRGSt 536 (548)
-..||.++||-++.-|||...
T Consensus 17 A~~~L~~~Gy~Il~rN~r~~~ 37 (117)
T PRK14676 17 VARIYDRSGRPVAARRWRGVS 37 (117)
T ss_pred HHHHHHHCCCEEeeeecCCCC
Confidence 457899999999999999743
No 470
>PRK14679 hypothetical protein; Provisional
Probab=20.26 E-value=97 Score=26.67 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=19.1
Q ss_pred hHHHHHHhcCcEEEEeCCCCCCC
Q 008927 515 LSIQYWTSRGWAFVDVNYGGSTG 537 (548)
Q Consensus 515 ~~~Q~~asrGyaVl~~NyRGStG 537 (548)
.-.+||..+||-++.-|||...|
T Consensus 24 ~A~~~L~~~Gy~Il~rN~r~~~G 46 (128)
T PRK14679 24 LALLALMLKGYRPLARRFAAAGG 46 (128)
T ss_pred HHHHHHHHCCCEEEeeeccCCCC
Confidence 44689999999999999997543
Done!