Query 008928
Match_columns 548
No_of_seqs 517 out of 2255
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 14:56:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 5.6E-32 1.9E-36 256.6 21.6 177 222-422 10-186 (196)
2 3md3_A Nuclear and cytoplasmic 100.0 1.9E-31 6.4E-36 245.4 21.0 164 226-418 1-166 (166)
3 4f02_A Polyadenylate-binding p 100.0 6.9E-31 2.4E-35 255.2 19.1 166 224-419 14-181 (213)
4 2cjk_A Nuclear polyadenylated 100.0 3.6E-31 1.2E-35 244.8 15.3 165 224-419 2-166 (167)
5 1b7f_A Protein (SXL-lethal pro 100.0 3E-30 1E-34 238.5 20.7 162 225-416 3-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 4.2E-30 1.4E-34 236.6 21.3 162 225-416 2-167 (167)
7 2qfj_A FBP-interacting repress 100.0 1.5E-30 5.1E-35 250.5 18.1 178 225-423 28-209 (216)
8 2g4b_A Splicing factor U2AF 65 100.0 1.6E-29 5.5E-34 234.8 19.6 157 224-416 3-171 (172)
9 2yh0_A Splicing factor U2AF 65 100.0 2.7E-29 9.4E-34 238.4 21.5 170 224-420 3-195 (198)
10 3nmr_A Cugbp ELAV-like family 100.0 5.9E-29 2E-33 231.0 19.8 166 224-417 2-175 (175)
11 1fje_B Nucleolin RBD12, protei 100.0 1.8E-29 6E-34 235.7 16.1 164 222-419 10-174 (175)
12 2ghp_A U4/U6 snRNA-associated 100.0 3.4E-28 1.2E-32 245.9 17.8 160 221-420 37-198 (292)
13 2ghp_A U4/U6 snRNA-associated 100.0 1.1E-27 3.7E-32 242.2 18.6 171 224-419 116-291 (292)
14 3smz_A Protein raver-1, ribonu 100.0 2.7E-27 9.1E-32 238.5 20.7 168 225-420 95-265 (284)
15 3tyt_A Heterogeneous nuclear r 100.0 2.8E-27 9.5E-32 229.6 18.9 165 224-416 3-204 (205)
16 3pgw_A U1-A; protein-RNA compl 99.9 7.2E-27 2.5E-31 235.1 22.0 167 222-417 6-281 (282)
17 3sde_A Paraspeckle component 1 99.9 4.3E-27 1.5E-31 235.5 19.8 155 222-419 19-179 (261)
18 3smz_A Protein raver-1, ribonu 99.9 7.5E-27 2.6E-31 235.2 21.0 153 225-420 22-176 (284)
19 2adc_A Polypyrimidine tract-bi 99.9 2.5E-26 8.5E-31 225.5 20.4 166 223-419 32-228 (229)
20 1qm9_A Polypyrimidine tract-bi 99.9 1.1E-26 3.8E-31 221.5 16.2 164 225-419 3-197 (198)
21 2kn4_A Immunoglobulin G-bindin 99.8 1.4E-20 4.8E-25 173.8 15.6 135 282-420 11-151 (158)
22 4f25_A Polyadenylate-binding p 99.8 1.2E-19 4.3E-24 159.5 10.5 108 225-352 5-113 (115)
23 2i2y_A Fusion protein consists 99.8 2.7E-19 9.2E-24 164.1 12.0 128 282-419 11-148 (150)
24 4fxv_A ELAV-like protein 1; RN 99.7 1E-17 3.5E-22 143.7 11.2 82 333-418 16-98 (99)
25 3pgw_S U1-70K; protein-RNA com 99.7 1.2E-17 4.2E-22 179.4 14.4 85 333-421 99-184 (437)
26 2lxi_A RNA-binding protein 10; 99.7 1.2E-17 4.2E-22 140.8 7.0 82 336-421 1-85 (91)
27 4fxv_A ELAV-like protein 1; RN 99.7 5E-17 1.7E-21 139.4 10.3 79 225-320 19-98 (99)
28 2lea_A Serine/arginine-rich sp 99.7 1.8E-17 6.2E-22 150.1 7.5 126 284-423 4-131 (135)
29 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.6E-16 5.4E-21 148.3 11.9 129 289-421 11-154 (165)
30 2dgs_A DAZ-associated protein 99.7 4E-16 1.4E-20 132.6 13.0 85 332-420 6-90 (99)
31 2dgo_A Cytotoxic granule-assoc 99.7 7.7E-16 2.6E-20 134.5 14.8 87 332-422 11-98 (115)
32 2fy1_A RNA-binding motif prote 99.7 4E-16 1.4E-20 137.4 13.0 84 334-422 5-89 (116)
33 3s8s_A Histone-lysine N-methyl 99.7 2.4E-16 8.1E-21 137.9 11.4 82 334-419 4-86 (110)
34 1whw_A Hypothetical protein ri 99.7 4.7E-16 1.6E-20 132.1 12.8 85 333-421 5-90 (99)
35 3pgw_S U1-70K; protein-RNA com 99.7 4.4E-16 1.5E-20 167.3 15.6 81 224-321 101-182 (437)
36 2dnz_A Probable RNA-binding pr 99.7 4.7E-16 1.6E-20 130.9 12.4 83 335-421 4-87 (95)
37 2dnm_A SRP46 splicing factor; 99.7 2.5E-16 8.5E-21 134.9 10.7 86 331-420 8-94 (103)
38 3md1_A Nuclear and cytoplasmic 99.7 4.5E-16 1.5E-20 127.6 11.5 80 336-419 1-81 (83)
39 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.8E-16 1.3E-20 129.2 11.2 82 334-419 4-86 (87)
40 1x5s_A Cold-inducible RNA-bind 99.7 4.2E-16 1.4E-20 133.1 11.7 86 332-421 8-94 (102)
41 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.8E-16 9.7E-21 134.2 10.5 86 332-421 8-94 (102)
42 1x5t_A Splicing factor 3B subu 99.7 2.7E-16 9.3E-21 132.7 10.2 83 335-421 4-88 (96)
43 2lkz_A RNA-binding protein 5; 99.7 1E-16 3.4E-21 136.8 7.5 82 333-418 6-94 (95)
44 2cqd_A RNA-binding region cont 99.7 7.4E-16 2.5E-20 134.9 13.1 87 333-423 14-100 (116)
45 3ex7_B RNA-binding protein 8A; 99.7 3E-16 1E-20 139.3 10.6 86 333-422 19-105 (126)
46 2cq0_A Eukaryotic translation 99.7 5.7E-16 2E-20 132.7 11.9 84 333-420 12-96 (103)
47 1u6f_A Tcubp1, RNA-binding pro 99.7 8E-16 2.8E-20 138.8 13.1 86 332-421 38-124 (139)
48 2cpz_A CUG triplet repeat RNA- 99.7 5.5E-16 1.9E-20 135.5 11.6 85 333-421 22-107 (115)
49 2cpf_A RNA binding motif prote 99.7 5.5E-16 1.9E-20 131.4 11.1 83 335-421 4-90 (98)
50 2lxi_A RNA-binding protein 10; 99.6 1.7E-16 5.9E-21 133.8 7.6 81 225-322 1-84 (91)
51 3p5t_L Cleavage and polyadenyl 99.6 1.1E-16 3.9E-21 134.1 6.4 81 337-421 2-85 (90)
52 3s7r_A Heterogeneous nuclear r 99.6 6.3E-16 2.1E-20 128.2 10.8 80 333-416 8-87 (87)
53 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.7E-16 1.6E-20 128.1 10.0 81 333-417 4-85 (85)
54 1p27_B RNA-binding protein 8A; 99.6 7.7E-16 2.6E-20 132.4 11.6 84 333-420 20-104 (106)
55 1x5u_A Splicing factor 3B subu 99.6 7.9E-16 2.7E-20 132.1 11.7 84 333-420 12-96 (105)
56 2hvz_A Splicing factor, argini 99.6 3.2E-16 1.1E-20 133.7 9.2 98 226-345 1-100 (101)
57 1x4h_A RNA-binding protein 28; 99.6 8.7E-16 3E-20 133.0 12.0 86 332-421 11-103 (111)
58 2cph_A RNA binding motif prote 99.6 8.6E-16 2.9E-20 132.2 11.9 86 332-421 11-99 (107)
59 3lqv_A PRE-mRNA branch site pr 99.6 2.1E-16 7E-21 138.1 8.1 101 224-361 7-108 (115)
60 2dng_A Eukaryotic translation 99.6 1.3E-15 4.4E-20 130.6 12.7 82 333-420 12-94 (103)
61 2dhg_A TRNA selenocysteine ass 99.6 8E-16 2.7E-20 131.8 11.2 83 333-420 6-91 (104)
62 2cqc_A Arginine/serine-rich sp 99.6 1E-15 3.4E-20 128.8 11.1 82 333-418 12-94 (95)
63 2d9p_A Polyadenylate-binding p 99.6 1.3E-15 4.6E-20 130.3 12.0 83 333-421 12-95 (103)
64 2do4_A Squamous cell carcinoma 99.6 1.5E-15 5.1E-20 129.3 12.1 83 333-420 14-97 (100)
65 2x1f_A MRNA 3'-END-processing 99.6 8.3E-16 2.9E-20 130.1 10.3 81 335-419 1-82 (96)
66 2rs2_A Musashi-1, RNA-binding 99.6 8.9E-16 3E-20 133.6 10.6 84 333-420 22-105 (109)
67 2e5h_A Zinc finger CCHC-type a 99.6 1E-15 3.5E-20 128.6 10.6 81 333-417 13-94 (94)
68 2cqg_A TDP-43, TAR DNA-binding 99.6 2.3E-15 7.9E-20 128.8 13.0 85 333-422 12-96 (103)
69 3s7r_A Heterogeneous nuclear r 99.6 1.1E-15 3.9E-20 126.6 10.6 80 222-318 8-87 (87)
70 1wi8_A EIF-4B, eukaryotic tran 99.6 1.4E-15 4.9E-20 130.5 11.5 82 333-420 12-95 (104)
71 3s8s_A Histone-lysine N-methyl 99.6 1.1E-15 3.7E-20 133.6 10.8 80 224-320 5-85 (110)
72 1s79_A Lupus LA protein; RRM, 99.6 6.5E-16 2.2E-20 133.6 9.1 80 223-320 9-88 (103)
73 2dgs_A DAZ-associated protein 99.6 2.2E-15 7.5E-20 128.1 12.1 83 223-322 8-90 (99)
74 1oo0_B CG8781-PA, drosophila Y 99.6 1.4E-15 4.9E-20 131.7 11.1 84 333-420 23-107 (110)
75 2dgp_A Bruno-like 4, RNA bindi 99.6 1.6E-15 5.6E-20 130.3 11.3 84 333-420 10-97 (106)
76 1h2v_Z 20 kDa nuclear CAP bind 99.6 2.3E-15 7.8E-20 138.8 13.0 83 333-419 36-119 (156)
77 2div_A TRNA selenocysteine ass 99.6 1.1E-15 3.9E-20 129.7 10.0 84 333-420 6-95 (99)
78 2dnh_A Bruno-like 5, RNA bindi 99.6 2.5E-15 8.6E-20 128.9 12.1 84 333-421 12-99 (105)
79 3ns6_A Eukaryotic translation 99.6 3.3E-16 1.1E-20 134.2 6.5 81 335-419 5-93 (100)
80 2dh8_A DAZ-associated protein 99.6 1.1E-15 3.9E-20 131.2 9.8 85 333-421 13-97 (105)
81 3md1_A Nuclear and cytoplasmic 99.6 2E-15 6.7E-20 123.8 10.6 79 226-321 2-81 (83)
82 2la6_A RNA-binding protein FUS 99.6 1.6E-15 5.6E-20 129.0 10.5 82 332-417 9-99 (99)
83 2cpe_A RNA-binding protein EWS 99.6 1.5E-15 5.2E-20 132.2 10.4 84 333-420 12-104 (113)
84 4f25_A Polyadenylate-binding p 99.6 1.8E-15 6.2E-20 132.8 10.8 78 336-419 5-83 (115)
85 2cqi_A Nucleolysin TIAR; RNA r 99.6 4.4E-15 1.5E-19 127.1 12.8 82 333-420 12-94 (103)
86 2fy1_A RNA-binding motif prote 99.6 1.9E-15 6.3E-20 133.1 10.7 83 224-324 6-89 (116)
87 2cq3_A RNA-binding protein 9; 99.6 5.6E-15 1.9E-19 126.4 13.2 84 333-422 12-96 (103)
88 2do0_A HnRNP M, heterogeneous 99.6 6.6E-15 2.3E-19 128.2 13.8 82 333-419 12-94 (114)
89 3ucg_A Polyadenylate-binding p 99.6 2.2E-15 7.7E-20 125.1 10.3 79 336-419 6-85 (89)
90 2do4_A Squamous cell carcinoma 99.6 3E-15 1E-19 127.5 11.3 82 222-321 14-96 (100)
91 1whw_A Hypothetical protein ri 99.6 3.2E-15 1.1E-19 126.9 11.4 83 223-322 6-89 (99)
92 1x4c_A Splicing factor, argini 99.6 5.1E-15 1.8E-19 128.2 12.9 77 333-420 12-94 (108)
93 2cq0_A Eukaryotic translation 99.6 2.8E-15 9.5E-20 128.3 11.0 84 222-322 12-96 (103)
94 1x4b_A Heterogeneous nuclear r 99.6 2.1E-15 7.2E-20 132.0 10.5 83 334-420 25-107 (116)
95 3ucg_A Polyadenylate-binding p 99.6 2.1E-15 7.2E-20 125.3 9.9 81 224-321 5-85 (89)
96 3bs9_A Nucleolysin TIA-1 isofo 99.6 2.1E-15 7.1E-20 124.7 9.9 80 224-320 5-85 (87)
97 2jrs_A RNA-binding protein 39; 99.6 2.5E-15 8.7E-20 130.6 10.8 83 333-419 23-106 (108)
98 3n9u_C Cleavage and polyadenyl 99.6 2E-15 6.8E-20 140.2 10.7 81 335-419 54-137 (156)
99 2cqi_A Nucleolysin TIAR; RNA r 99.6 5.3E-15 1.8E-19 126.6 12.6 82 222-322 12-94 (103)
100 4a8x_A RNA-binding protein wit 99.6 2.4E-15 8.1E-20 124.5 9.9 81 335-419 3-85 (88)
101 2cqc_A Arginine/serine-rich sp 99.6 4E-15 1.4E-19 125.1 11.4 82 221-319 11-93 (95)
102 2lkz_A RNA-binding protein 5; 99.6 1.2E-15 4.3E-20 130.0 8.4 80 224-320 8-94 (95)
103 1x5u_A Splicing factor 3B subu 99.6 3.5E-15 1.2E-19 128.0 11.1 85 221-322 11-96 (105)
104 2dgx_A KIAA0430 protein; RRM d 99.6 4.3E-15 1.5E-19 126.0 11.5 82 333-421 6-92 (96)
105 3ns6_A Eukaryotic translation 99.6 1.1E-15 3.6E-20 131.0 7.7 81 223-320 4-92 (100)
106 1s79_A Lupus LA protein; RRM, 99.6 1.4E-15 4.8E-20 131.4 8.6 80 334-418 9-88 (103)
107 2dgo_A Cytotoxic granule-assoc 99.6 4.9E-15 1.7E-19 129.3 12.1 84 222-322 12-96 (115)
108 3mdf_A Peptidyl-prolyl CIS-tra 99.6 2.6E-15 8.9E-20 123.6 9.7 78 224-318 6-84 (85)
109 3ulh_A THO complex subunit 4; 99.6 4.5E-15 1.5E-19 127.8 11.6 81 332-417 25-106 (107)
110 2ywk_A Putative RNA-binding pr 99.6 3.2E-15 1.1E-19 125.8 10.5 81 333-418 13-94 (95)
111 2ywk_A Putative RNA-binding pr 99.6 3.6E-15 1.2E-19 125.5 10.7 79 223-319 14-93 (95)
112 3p5t_L Cleavage and polyadenyl 99.6 8.7E-16 3E-20 128.7 6.8 79 226-321 2-83 (90)
113 2dnh_A Bruno-like 5, RNA bindi 99.6 5.4E-15 1.8E-19 126.8 11.7 82 223-322 13-98 (105)
114 2dnm_A SRP46 splicing factor; 99.6 3.4E-15 1.2E-19 127.8 10.4 83 223-322 11-94 (103)
115 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3.3E-15 1.1E-19 127.5 10.2 84 223-323 10-94 (102)
116 2dnz_A Probable RNA-binding pr 99.6 5.8E-15 2E-19 124.2 11.5 82 224-322 4-86 (95)
117 2dis_A Unnamed protein product 99.6 5E-15 1.7E-19 127.9 11.4 85 334-422 6-95 (109)
118 1x4h_A RNA-binding protein 28; 99.6 6.2E-15 2.1E-19 127.6 12.0 84 222-322 12-102 (111)
119 2dgv_A HnRNP M, heterogeneous 99.6 4.8E-15 1.7E-19 124.0 11.0 84 333-422 5-89 (92)
120 2cq3_A RNA-binding protein 9; 99.6 8.3E-15 2.8E-19 125.4 12.7 83 221-322 11-94 (103)
121 2khc_A Testis-specific RNP-typ 99.6 2.5E-15 8.6E-20 131.8 9.6 81 333-417 37-118 (118)
122 2dng_A Eukaryotic translation 99.6 5.8E-15 2E-19 126.5 11.6 82 223-322 13-94 (103)
123 1wi8_A EIF-4B, eukaryotic tran 99.6 5.5E-15 1.9E-19 126.9 11.5 84 223-323 13-96 (104)
124 2cpy_A RNA-binding protein 12; 99.6 2.1E-15 7.1E-20 132.1 8.8 82 222-321 12-94 (114)
125 2cpz_A CUG triplet repeat RNA- 99.6 5.8E-15 2E-19 129.0 11.6 83 223-322 23-106 (115)
126 2x1f_A MRNA 3'-END-processing 99.6 4.1E-15 1.4E-19 125.8 10.2 80 225-321 2-82 (96)
127 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.1E-15 3.6E-20 123.6 6.3 76 337-416 1-76 (77)
128 2dh8_A DAZ-associated protein 99.6 4.4E-15 1.5E-19 127.6 10.3 84 222-322 13-96 (105)
129 1x5t_A Splicing factor 3B subu 99.6 3.8E-15 1.3E-19 125.6 9.7 82 224-322 4-87 (96)
130 2mss_A Protein (musashi1); RNA 99.6 1.6E-15 5.5E-20 122.2 7.0 75 227-318 1-75 (75)
131 2cpf_A RNA binding motif prote 99.6 5.3E-15 1.8E-19 125.3 10.5 85 224-322 4-89 (98)
132 2jwn_A Embryonic polyadenylate 99.6 6.1E-15 2.1E-19 130.5 11.3 80 335-419 35-115 (124)
133 1x5s_A Cold-inducible RNA-bind 99.6 4E-15 1.4E-19 127.0 9.8 83 223-322 10-93 (102)
134 4a8x_A RNA-binding protein wit 99.6 3.4E-15 1.2E-19 123.5 9.1 81 225-321 4-85 (88)
135 1p1t_A Cleavage stimulation fa 99.6 2.5E-15 8.5E-20 128.6 8.4 83 334-420 6-89 (104)
136 2e5h_A Zinc finger CCHC-type a 99.6 5.9E-15 2E-19 123.9 10.6 79 223-318 14-93 (94)
137 2cq4_A RNA binding motif prote 99.6 3E-15 1E-19 130.6 9.0 82 223-321 23-104 (114)
138 2cph_A RNA binding motif prote 99.6 6.8E-15 2.3E-19 126.5 11.1 85 222-322 12-98 (107)
139 1x4a_A Splicing factor, argini 99.6 1E-14 3.4E-19 126.3 12.2 81 333-420 19-100 (109)
140 1p27_B RNA-binding protein 8A; 99.6 5.3E-15 1.8E-19 127.1 10.2 81 223-320 21-102 (106)
141 2cqp_A RNA-binding protein 12; 99.6 2.7E-15 9.2E-20 127.1 8.2 83 333-419 12-95 (98)
142 2dgx_A KIAA0430 protein; RRM d 99.6 9.1E-15 3.1E-19 124.0 11.5 79 223-321 7-90 (96)
143 2rs2_A Musashi-1, RNA-binding 99.6 6.3E-15 2.1E-19 128.2 10.7 84 221-321 21-104 (109)
144 2cq4_A RNA binding motif prote 99.6 1.2E-15 4.3E-20 133.1 6.3 81 334-419 23-104 (114)
145 2kt5_A RNA and export factor-b 99.6 1.4E-14 4.6E-19 128.4 12.9 86 331-421 30-116 (124)
146 2dgw_A Probable RNA-binding pr 99.6 1.2E-14 4.1E-19 121.6 11.9 80 333-419 7-87 (91)
147 1wg5_A Heterogeneous nuclear r 99.6 8.7E-15 3E-19 126.0 11.3 83 332-419 11-94 (104)
148 2div_A TRNA selenocysteine ass 99.6 5.3E-15 1.8E-19 125.6 9.8 82 223-321 7-94 (99)
149 2mss_A Protein (musashi1); RNA 99.6 1.8E-15 6.2E-20 121.9 6.4 75 338-416 1-75 (75)
150 1x4a_A Splicing factor, argini 99.6 1.2E-14 4E-19 125.8 11.9 81 222-322 19-100 (109)
151 2kxn_B Transformer-2 protein h 99.6 4E-15 1.4E-19 133.6 9.3 83 333-419 43-126 (129)
152 2cpy_A RNA-binding protein 12; 99.6 3.2E-15 1.1E-19 130.9 8.2 82 333-419 12-94 (114)
153 2ek1_A RNA-binding protein 12; 99.6 2.4E-15 8.3E-20 126.5 7.1 81 334-418 13-94 (95)
154 2dgp_A Bruno-like 4, RNA bindi 99.6 6.8E-15 2.3E-19 126.4 10.1 84 222-322 10-97 (106)
155 2dhg_A TRNA selenocysteine ass 99.6 8.3E-15 2.8E-19 125.4 10.6 82 223-322 7-91 (104)
156 1x4b_A Heterogeneous nuclear r 99.6 6.3E-15 2.2E-19 129.0 9.9 82 224-322 26-107 (116)
157 2do0_A HnRNP M, heterogeneous 99.6 1.1E-14 3.9E-19 126.7 11.4 82 222-321 12-94 (114)
158 1sjq_A Polypyrimidine tract-bi 99.6 6.7E-15 2.3E-19 127.8 9.9 78 222-322 13-93 (105)
159 1wg5_A Heterogeneous nuclear r 99.6 7.4E-15 2.5E-19 126.5 10.1 81 223-321 13-94 (104)
160 1wez_A HnRNP H', FTP-3, hetero 99.6 6.7E-15 2.3E-19 126.7 9.8 81 333-419 12-92 (102)
161 1wez_A HnRNP H', FTP-3, hetero 99.6 3.6E-15 1.2E-19 128.5 8.0 81 222-321 12-92 (102)
162 2cpe_A RNA-binding protein EWS 99.6 8.7E-15 3E-19 127.3 10.6 85 221-322 11-104 (113)
163 1p1t_A Cleavage stimulation fa 99.6 3.1E-15 1.1E-19 128.0 7.5 81 224-321 7-88 (104)
164 1oo0_B CG8781-PA, drosophila Y 99.6 8.2E-15 2.8E-19 126.9 10.2 81 223-320 24-105 (110)
165 2cpi_A CCR4-NOT transcription 99.6 7.4E-15 2.5E-19 128.0 9.9 83 334-420 13-102 (111)
166 2db1_A Heterogeneous nuclear r 99.6 4.5E-15 1.6E-19 131.0 8.7 80 223-320 15-97 (118)
167 2dgw_A Probable RNA-binding pr 99.6 1.2E-14 4.1E-19 121.5 10.8 80 223-321 8-87 (91)
168 3ulh_A THO complex subunit 4; 99.6 9.6E-15 3.3E-19 125.7 10.4 79 223-319 27-106 (107)
169 2jrs_A RNA-binding protein 39; 99.6 9.3E-15 3.2E-19 127.0 10.4 83 222-321 23-106 (108)
170 2hgl_A HNRPF protein, heteroge 99.6 4.7E-15 1.6E-19 134.7 8.8 81 333-419 41-125 (136)
171 2cqd_A RNA-binding region cont 99.6 1.4E-14 4.9E-19 126.7 11.6 83 221-321 13-96 (116)
172 2dgv_A HnRNP M, heterogeneous 99.6 1.1E-14 3.8E-19 121.7 10.4 80 223-321 6-86 (92)
173 2fc8_A NCL protein; structure 99.6 1.4E-14 4.7E-19 123.6 11.1 82 332-420 11-93 (102)
174 2dgu_A Heterogeneous nuclear r 99.6 2.2E-14 7.5E-19 123.0 12.4 78 333-422 8-86 (103)
175 2cqg_A TDP-43, TAR DNA-binding 99.6 2.1E-14 7.3E-19 122.8 12.3 83 222-322 12-94 (103)
176 2m2b_A RNA-binding protein 10; 99.6 3.5E-15 1.2E-19 133.9 7.7 82 333-419 20-108 (131)
177 2fc9_A NCL protein; structure 99.6 1.4E-14 4.7E-19 123.6 11.0 80 333-420 12-92 (101)
178 1x4e_A RNA binding motif, sing 99.6 2E-15 6.8E-20 124.6 5.5 80 334-417 3-83 (85)
179 2nlw_A Eukaryotic translation 99.6 1.1E-14 3.9E-19 125.5 10.5 81 222-321 12-100 (105)
180 2la6_A RNA-binding protein FUS 99.6 1.3E-14 4.4E-19 123.4 10.7 80 222-318 10-98 (99)
181 1x4d_A Matrin 3; structural ge 99.6 7.2E-15 2.4E-19 127.0 9.2 77 333-419 12-92 (102)
182 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.9E-15 9.8E-20 128.0 6.6 81 333-419 16-98 (100)
183 2dnp_A RNA-binding protein 14; 99.6 1.7E-14 5.8E-19 120.5 11.1 76 222-322 6-82 (90)
184 2ki2_A SS-DNA binding protein 99.6 1.8E-15 6.2E-20 126.2 5.1 79 337-420 2-81 (90)
185 2d9p_A Polyadenylate-binding p 99.6 1.4E-14 4.9E-19 123.9 10.8 82 222-322 12-94 (103)
186 2cpd_A Apobec-1 stimulating pr 99.6 3.4E-14 1.2E-18 120.8 12.9 76 222-322 12-90 (99)
187 2khc_A Testis-specific RNP-typ 99.6 8.9E-15 3E-19 128.3 9.6 81 221-318 36-117 (118)
188 1sjq_A Polypyrimidine tract-bi 99.6 6.8E-15 2.3E-19 127.8 8.6 77 334-420 14-93 (105)
189 2dgt_A RNA-binding protein 30; 99.6 2.7E-14 9.3E-19 119.7 12.0 76 222-322 7-83 (92)
190 2jwn_A Embryonic polyadenylate 99.6 1.3E-14 4.5E-19 128.3 10.6 80 225-321 36-115 (124)
191 1iqt_A AUF1, heterogeneous nuc 99.6 1.8E-15 6.3E-20 121.7 4.5 75 338-416 1-75 (75)
192 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2E-14 6.7E-19 129.3 11.7 81 332-416 59-140 (140)
193 2hgn_A Heterogeneous nuclear r 99.6 1.7E-15 5.7E-20 138.2 4.5 122 285-420 2-124 (139)
194 1x5o_A RNA binding motif, sing 99.5 3E-14 1E-18 124.1 12.3 82 333-419 22-112 (114)
195 3r27_A HnRNP L, heterogeneous 99.5 1.7E-14 5.9E-19 124.1 10.5 77 333-419 18-97 (100)
196 2dnq_A RNA-binding protein 4B; 99.5 2.2E-14 7.6E-19 119.8 11.0 75 223-322 6-81 (90)
197 2cpx_A Hypothetical protein FL 99.5 5.7E-15 2E-19 128.8 7.7 85 333-421 22-107 (115)
198 2dnq_A RNA-binding protein 4B; 99.5 3.1E-14 1E-18 118.9 11.8 77 333-421 5-82 (90)
199 3r27_A HnRNP L, heterogeneous 99.5 1.7E-14 5.7E-19 124.2 10.4 76 223-321 19-97 (100)
200 2cq1_A PTB-like protein L; RRM 99.5 1.9E-14 6.5E-19 124.0 10.8 78 333-420 12-92 (101)
201 1x4d_A Matrin 3; structural ge 99.5 1.1E-14 3.9E-19 125.7 9.3 75 224-321 14-92 (102)
202 1u6f_A Tcubp1, RNA-binding pro 99.5 2.1E-14 7.2E-19 129.5 11.5 86 220-322 37-123 (139)
203 1iqt_A AUF1, heterogeneous nuc 99.5 3.7E-15 1.3E-19 119.9 5.8 75 227-318 1-75 (75)
204 2kxn_B Transformer-2 protein h 99.5 1.3E-14 4.5E-19 130.2 9.9 84 221-321 42-126 (129)
205 1x4e_A RNA binding motif, sing 99.5 5.9E-15 2E-19 121.7 7.0 79 224-319 4-83 (85)
206 2dnn_A RNA-binding protein 12; 99.5 1.4E-14 4.7E-19 126.6 9.6 77 225-320 16-92 (109)
207 2lmi_A GRSF-1, G-rich sequence 99.5 4.6E-15 1.6E-19 128.4 6.5 81 222-320 8-91 (107)
208 2err_A Ataxin-2-binding protei 99.5 1.6E-14 5.4E-19 125.6 9.9 80 222-320 26-106 (109)
209 3n9u_C Cleavage and polyadenyl 99.5 1.3E-14 4.6E-19 134.5 10.1 80 224-320 54-136 (156)
210 2hgl_A HNRPF protein, heteroge 99.5 9.3E-15 3.2E-19 132.7 8.8 80 223-320 42-124 (136)
211 2db1_A Heterogeneous nuclear r 99.5 9.1E-15 3.1E-19 129.1 8.5 82 333-419 14-98 (118)
212 2j76_E EIF-4B, EIF4B, eukaryot 99.5 6E-15 2.1E-19 126.0 7.1 82 223-321 17-98 (100)
213 2e5j_A Methenyltetrahydrofolat 99.5 1.9E-14 6.5E-19 122.0 10.0 78 222-321 16-94 (97)
214 3ex7_B RNA-binding protein 8A; 99.5 1.6E-14 5.4E-19 128.1 9.9 83 222-321 19-102 (126)
215 2hvz_A Splicing factor, argini 99.5 2.3E-14 7.7E-19 122.2 10.4 75 337-420 1-76 (101)
216 2cqp_A RNA-binding protein 12; 99.5 1.1E-14 3.7E-19 123.4 8.3 81 224-321 14-95 (98)
217 1wex_A Hypothetical protein (r 99.5 2.8E-14 9.4E-19 123.6 11.0 77 223-322 13-92 (104)
218 2ytc_A PRE-mRNA-splicing facto 99.5 2E-14 6.7E-19 118.4 9.5 74 222-318 9-84 (85)
219 2ek1_A RNA-binding protein 12; 99.5 8.9E-15 3E-19 123.1 7.5 78 225-319 15-93 (95)
220 1wex_A Hypothetical protein (r 99.5 4.7E-14 1.6E-18 122.2 12.1 77 333-419 12-91 (104)
221 2wbr_A GW182, gawky, LD47780P; 99.5 1.6E-14 5.6E-19 121.0 8.7 71 225-318 7-78 (89)
222 2cq1_A PTB-like protein L; RRM 99.5 4E-14 1.4E-18 122.0 11.5 77 223-322 13-92 (101)
223 2cpj_A Non-POU domain-containi 99.5 3E-14 1E-18 121.1 10.5 77 222-321 12-89 (99)
224 1wf1_A RNA-binding protein RAL 99.5 2.4E-14 8.2E-19 124.2 10.0 93 309-419 6-100 (110)
225 2la4_A Nuclear and cytoplasmic 99.5 2.1E-14 7.1E-19 122.4 9.5 74 224-320 26-100 (101)
226 1x4g_A Nucleolysin TIAR; struc 99.5 3.7E-14 1.2E-18 122.8 11.1 78 334-421 23-101 (109)
227 2xnq_A Nuclear polyadenylated 99.5 3.4E-14 1.2E-18 120.9 10.7 74 222-320 19-94 (97)
228 2cpi_A CCR4-NOT transcription 99.5 1.5E-14 5E-19 126.1 8.6 85 224-322 14-102 (111)
229 1uaw_A Mouse-musashi-1; RNP-ty 99.5 7.2E-15 2.5E-19 118.7 6.1 75 226-318 1-76 (77)
230 2dgu_A Heterogeneous nuclear r 99.5 4.5E-14 1.6E-18 121.0 11.4 75 223-322 9-84 (103)
231 2ad9_A Polypyrimidine tract-bi 99.5 2E-14 6.8E-19 127.6 9.3 78 332-419 27-107 (119)
232 1wel_A RNA-binding protein 12; 99.5 8.6E-15 2.9E-19 130.0 7.0 82 333-419 22-104 (124)
233 1h2v_Z 20 kDa nuclear CAP bind 99.5 3E-14 1E-18 131.2 10.7 82 223-321 37-119 (156)
234 1x5o_A RNA binding motif, sing 99.5 3.7E-14 1.3E-18 123.5 10.7 80 223-320 23-111 (114)
235 1x4g_A Nucleolysin TIAR; struc 99.5 4.6E-14 1.6E-18 122.2 11.2 76 224-322 24-100 (109)
236 2m2b_A RNA-binding protein 10; 99.5 1E-14 3.4E-19 130.9 7.3 83 222-322 20-109 (131)
237 2kt5_A RNA and export factor-b 99.5 4.2E-14 1.4E-18 125.3 11.2 82 222-321 32-114 (124)
238 2ad9_A Polypyrimidine tract-bi 99.5 3.7E-14 1.3E-18 125.9 10.8 77 223-322 29-108 (119)
239 2jvr_A Nucleolar protein 3; RN 99.5 2E-14 6.9E-19 126.0 9.0 79 222-321 25-105 (111)
240 1wel_A RNA-binding protein 12; 99.5 7.3E-15 2.5E-19 130.4 6.2 81 223-320 23-103 (124)
241 3q2s_C Cleavage and polyadenyl 99.5 1.4E-14 4.6E-19 142.7 8.8 81 335-419 67-150 (229)
242 1whx_A Hypothetical protein ri 99.5 1.4E-14 4.9E-19 126.4 7.9 74 224-320 9-83 (111)
243 2dha_A FLJ20171 protein; RRM d 99.5 9.1E-15 3.1E-19 130.6 6.8 85 334-419 21-105 (123)
244 2kn4_A Immunoglobulin G-bindin 99.5 3.9E-14 1.3E-18 130.3 11.2 82 223-321 68-150 (158)
245 2dgt_A RNA-binding protein 30; 99.5 7.6E-14 2.6E-18 117.0 11.9 77 333-421 7-84 (92)
246 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 4E-14 1.4E-18 127.2 10.9 81 221-318 59-140 (140)
247 2fc9_A NCL protein; structure 99.5 4.4E-14 1.5E-18 120.4 10.6 80 222-322 12-92 (101)
248 1why_A Hypothetical protein ri 99.5 3.6E-14 1.2E-18 120.1 9.9 76 223-321 15-93 (97)
249 2nlw_A Eukaryotic translation 99.5 2.6E-14 8.9E-19 123.3 9.1 80 334-419 13-100 (105)
250 1fj7_A Nucleolin RBD1, protein 99.5 4.7E-15 1.6E-19 126.5 4.1 81 334-420 15-96 (101)
251 2err_A Ataxin-2-binding protei 99.5 2.6E-14 9E-19 124.1 8.9 81 333-419 26-107 (109)
252 2dnn_A RNA-binding protein 12; 99.5 1.8E-14 6.3E-19 125.8 7.9 81 333-419 13-93 (109)
253 1why_A Hypothetical protein ri 99.5 5E-14 1.7E-18 119.3 10.4 77 333-419 14-93 (97)
254 2dis_A Unnamed protein product 99.5 4.6E-14 1.6E-18 121.8 10.3 82 224-322 7-93 (109)
255 2cpd_A Apobec-1 stimulating pr 99.5 1.4E-13 4.6E-18 117.0 13.0 79 332-420 11-90 (99)
256 2ki2_A SS-DNA binding protein 99.5 6.7E-15 2.3E-19 122.7 4.7 78 226-321 2-80 (90)
257 2kvi_A Nuclear polyadenylated 99.5 1.9E-14 6.4E-19 121.9 7.5 74 223-321 8-83 (96)
258 1fj7_A Nucleolin RBD1, protein 99.5 1.2E-14 4E-19 124.0 6.2 81 223-321 15-95 (101)
259 1nu4_A U1A RNA binding domain; 99.5 2.2E-14 7.5E-19 121.1 7.8 79 223-321 6-89 (97)
260 2lmi_A GRSF-1, G-rich sequence 99.5 8.1E-15 2.8E-19 126.9 5.2 81 333-419 8-92 (107)
261 2a3j_A U1 small nuclear ribonu 99.5 4.5E-14 1.5E-18 126.7 10.2 81 333-420 26-111 (127)
262 2dha_A FLJ20171 protein; RRM d 99.5 1.6E-14 5.3E-19 129.0 7.2 77 225-319 23-103 (123)
263 2a3j_A U1 small nuclear ribonu 99.5 4E-14 1.4E-18 127.0 9.9 79 223-321 27-110 (127)
264 2wbr_A GW182, gawky, LD47780P; 99.5 3.7E-14 1.3E-18 118.9 8.8 73 335-417 6-79 (89)
265 2krb_A Eukaryotic translation 99.5 2.4E-14 8.2E-19 117.3 7.5 72 226-316 2-81 (81)
266 2ytc_A PRE-mRNA-splicing facto 99.5 5.4E-14 1.9E-18 115.8 9.7 75 333-417 9-85 (85)
267 2jvo_A Nucleolar protein 3; nu 99.5 4.5E-14 1.6E-18 122.7 9.7 75 222-321 28-103 (108)
268 3lqv_A PRE-mRNA branch site pr 99.5 5.1E-14 1.7E-18 122.8 10.0 79 334-419 6-85 (115)
269 2cpj_A Non-POU domain-containi 99.5 5.1E-14 1.7E-18 119.7 9.7 78 333-420 12-90 (99)
270 1nu4_A U1A RNA binding domain; 99.5 2.4E-14 8.3E-19 120.8 7.5 81 333-420 5-90 (97)
271 1x4c_A Splicing factor, argini 99.5 7.6E-14 2.6E-18 120.8 10.7 76 223-322 13-94 (108)
272 1wf1_A RNA-binding protein RAL 99.5 6.9E-14 2.4E-18 121.3 10.5 74 223-321 25-100 (110)
273 2xs2_A Deleted in azoospermia- 99.5 2.4E-14 8.3E-19 122.2 7.4 80 334-419 7-86 (102)
274 2kvi_A Nuclear polyadenylated 99.5 4.4E-14 1.5E-18 119.6 8.9 78 333-422 7-86 (96)
275 1x4f_A Matrin 3; structural ge 99.5 3.2E-14 1.1E-18 125.0 8.3 77 222-321 22-102 (112)
276 2hgm_A HNRPF protein, heteroge 99.5 2.2E-14 7.5E-19 128.6 7.3 80 333-418 39-120 (126)
277 1rk8_A CG8781-PA, CG8781-PA pr 99.5 5.3E-14 1.8E-18 131.1 10.1 82 223-321 70-152 (165)
278 2xs2_A Deleted in azoospermia- 99.5 2.2E-14 7.5E-19 122.5 6.9 79 223-320 7-85 (102)
279 1x4f_A Matrin 3; structural ge 99.5 3.2E-14 1.1E-18 125.0 8.0 78 333-420 22-103 (112)
280 2lcw_A RNA-binding protein FUS 99.2 1.9E-15 6.4E-20 132.5 0.0 83 334-420 5-96 (116)
281 1fjc_A Nucleolin RBD2, protein 99.5 5.8E-14 2E-18 118.4 9.2 78 222-321 13-91 (96)
282 2krb_A Eukaryotic translation 99.5 2E-14 6.9E-19 117.8 6.1 71 337-413 2-80 (81)
283 2lea_A Serine/arginine-rich sp 99.5 4E-14 1.4E-18 128.0 8.5 82 223-321 45-127 (135)
284 1fjc_A Nucleolin RBD2, protein 99.5 5.1E-14 1.7E-18 118.7 8.6 79 333-420 13-92 (96)
285 2hgm_A HNRPF protein, heteroge 99.5 3.7E-14 1.3E-18 127.2 8.1 79 223-320 40-120 (126)
286 3beg_B Splicing factor, argini 99.5 5.4E-14 1.9E-18 123.4 8.8 75 334-419 14-94 (115)
287 4f02_A Polyadenylate-binding p 99.5 9.6E-14 3.3E-18 134.2 11.3 82 334-419 13-95 (213)
288 2hzc_A Splicing factor U2AF 65 99.5 8.3E-14 2.8E-18 115.0 9.3 72 223-317 4-86 (87)
289 2dnp_A RNA-binding protein 14; 99.5 1.8E-13 6.2E-18 114.2 11.1 75 333-419 6-81 (90)
290 2jvr_A Nucleolar protein 3; RN 99.5 6.5E-14 2.2E-18 122.8 8.5 77 335-419 27-105 (111)
291 2cpx_A Hypothetical protein FL 99.5 8.6E-14 2.9E-18 121.2 9.3 83 223-322 23-106 (115)
292 2e5j_A Methenyltetrahydrofolat 99.5 8.3E-14 2.8E-18 118.0 8.9 78 333-419 16-94 (97)
293 2cqh_A IGF-II mRNA-binding pro 99.5 5.7E-14 2E-18 117.9 7.8 76 223-322 6-84 (93)
294 1fxl_A Paraneoplastic encephal 99.5 1.6E-13 5.4E-18 125.4 11.3 80 336-419 2-82 (167)
295 1l3k_A Heterogeneous nuclear r 99.5 1.4E-13 4.7E-18 129.7 11.2 83 333-419 10-92 (196)
296 2hgn_A Heterogeneous nuclear r 99.5 1.5E-14 5.3E-19 131.8 4.4 80 223-321 44-123 (139)
297 2la4_A Nuclear and cytoplasmic 99.5 6.8E-14 2.3E-18 119.2 8.1 75 335-419 26-101 (101)
298 2e5g_A U6 snRNA-specific termi 99.5 2.1E-13 7.2E-18 114.9 10.8 76 334-419 6-82 (94)
299 2cqh_A IGF-II mRNA-binding pro 99.5 8.1E-14 2.8E-18 116.9 8.2 77 334-421 6-85 (93)
300 2jvo_A Nucleolar protein 3; nu 99.5 1.1E-13 3.7E-18 120.3 9.3 76 333-420 28-104 (108)
301 1b7f_A Protein (SXL-lethal pro 99.5 1.6E-13 5.5E-18 125.9 10.6 81 335-419 2-83 (168)
302 2xnq_A Nuclear polyadenylated 99.5 2.4E-13 8.3E-18 115.6 10.9 75 333-419 19-95 (97)
303 3q2s_C Cleavage and polyadenyl 99.5 7.6E-14 2.6E-18 137.4 8.8 80 224-320 67-149 (229)
304 1whx_A Hypothetical protein ri 99.5 1.2E-13 4E-18 120.6 8.9 75 335-419 9-84 (111)
305 2e44_A Insulin-like growth fac 99.5 1.4E-13 4.9E-18 116.0 9.2 77 224-321 14-92 (96)
306 2i2y_A Fusion protein consists 99.5 1.3E-13 4.6E-18 126.0 9.6 79 221-321 69-148 (150)
307 2e5g_A U6 snRNA-specific termi 99.5 3.2E-13 1.1E-17 113.7 11.2 76 224-321 7-82 (94)
308 2f3j_A RNA and export factor b 99.5 1.4E-13 4.9E-18 130.1 10.1 82 333-419 85-167 (177)
309 2voo_A Lupus LA protein; RNA-b 99.5 1.4E-13 4.7E-18 132.0 10.1 122 293-419 63-187 (193)
310 2lcw_A RNA-binding protein FUS 99.2 6.1E-15 2.1E-19 129.2 0.0 85 222-323 4-97 (116)
311 3egn_A RNA-binding protein 40; 99.5 4.1E-14 1.4E-18 128.4 5.4 83 333-419 42-130 (143)
312 1x5p_A Negative elongation fac 99.4 6.2E-13 2.1E-17 112.6 12.1 75 223-322 13-88 (97)
313 3egn_A RNA-binding protein 40; 99.4 1.7E-13 5.9E-18 124.3 9.1 85 223-321 43-130 (143)
314 2e44_A Insulin-like growth fac 99.4 2.6E-13 8.8E-18 114.4 9.4 79 333-419 12-92 (96)
315 2fc8_A NCL protein; structure 99.4 3.4E-13 1.2E-17 114.9 10.2 81 222-322 12-93 (102)
316 3d2w_A TAR DNA-binding protein 99.4 1.9E-13 6.6E-18 114.5 8.4 77 333-419 8-84 (89)
317 1wg1_A KIAA1579 protein, homol 99.4 2.2E-13 7.6E-18 113.4 8.4 73 224-320 4-77 (88)
318 1wf0_A TDP-43, TAR DNA-binding 99.4 1.1E-13 3.8E-18 115.0 6.5 76 335-420 4-79 (88)
319 1x5p_A Negative elongation fac 99.4 8.8E-13 3E-17 111.7 12.0 76 333-420 12-88 (97)
320 2f3j_A RNA and export factor b 99.4 3.1E-13 1.1E-17 127.9 9.8 81 223-321 86-167 (177)
321 3d2w_A TAR DNA-binding protein 99.4 3.1E-13 1.1E-17 113.3 8.6 76 223-321 9-84 (89)
322 2diu_A KIAA0430 protein; struc 99.4 8.1E-13 2.8E-17 111.9 10.2 75 334-421 6-86 (96)
323 1wf0_A TDP-43, TAR DNA-binding 99.4 4E-13 1.4E-17 111.6 8.0 76 224-322 4-79 (88)
324 2voo_A Lupus LA protein; RNA-b 99.4 6E-13 2E-17 127.6 10.0 79 224-320 108-186 (193)
325 2cq2_A Hypothetical protein LO 99.4 3.6E-13 1.2E-17 118.6 7.4 73 224-319 24-104 (114)
326 2j8a_A Histone-lysine N-methyl 99.4 4E-13 1.4E-17 120.1 7.8 78 337-418 3-95 (136)
327 2dnl_A Cytoplasmic polyadenyla 99.4 4.8E-13 1.6E-17 117.0 8.2 78 334-417 6-86 (114)
328 3md3_A Nuclear and cytoplasmic 99.4 1.1E-12 3.7E-17 119.7 10.6 78 337-419 1-79 (166)
329 2cq2_A Hypothetical protein LO 99.4 7.3E-13 2.5E-17 116.6 8.8 77 333-419 22-106 (114)
330 3beg_B Splicing factor, argini 99.4 4.9E-13 1.7E-17 117.3 7.5 73 224-320 15-93 (115)
331 2g4b_A Splicing factor U2AF 65 99.4 8.9E-13 3.1E-17 121.5 9.3 77 225-318 94-171 (172)
332 2cjk_A Nuclear polyadenylated 99.4 5.4E-13 1.8E-17 122.5 7.7 80 335-419 2-81 (167)
333 1wg1_A KIAA1579 protein, homol 99.4 7.5E-13 2.6E-17 110.2 7.8 74 335-419 4-78 (88)
334 1sjr_A Polypyrimidine tract-bi 99.4 1.3E-12 4.4E-17 122.0 10.1 77 224-321 45-124 (164)
335 2qfj_A FBP-interacting repress 99.4 9.9E-13 3.4E-17 125.7 9.7 81 335-419 27-108 (216)
336 2hzc_A Splicing factor U2AF 65 99.4 6.7E-13 2.3E-17 109.5 7.0 74 335-415 5-86 (87)
337 2yh0_A Splicing factor U2AF 65 99.4 1.9E-12 6.4E-17 122.1 10.8 82 223-321 112-194 (198)
338 2pe8_A Splicing factor 45; RRM 99.4 2.9E-12 9.9E-17 111.0 10.9 81 334-418 6-93 (105)
339 3zzy_A Polypyrimidine tract-bi 99.4 2.7E-12 9.3E-17 115.5 10.7 75 225-321 28-106 (130)
340 2e5i_A Heterogeneous nuclear r 99.4 2.7E-12 9.3E-17 114.7 10.5 74 226-322 26-103 (124)
341 1sjr_A Polypyrimidine tract-bi 99.3 3.3E-12 1.1E-16 119.3 11.1 78 335-420 45-125 (164)
342 3zzy_A Polypyrimidine tract-bi 99.3 3.3E-12 1.1E-16 114.9 10.7 76 336-420 28-107 (130)
343 2dnl_A Cytoplasmic polyadenyla 99.3 1.5E-12 5.1E-17 113.8 8.1 79 223-318 6-85 (114)
344 3nmr_A Cugbp ELAV-like family 99.3 3.1E-12 1.1E-16 117.9 10.5 81 335-419 2-88 (175)
345 2diu_A KIAA0430 protein; struc 99.3 2.3E-12 8E-17 109.1 8.2 70 226-322 10-85 (96)
346 2e5i_A Heterogeneous nuclear r 99.3 4.4E-12 1.5E-16 113.3 10.5 75 337-421 26-104 (124)
347 2bz2_A Negative elongation fac 99.3 2.4E-12 8.3E-17 114.2 8.6 74 223-321 37-111 (121)
348 3tyt_A Heterogeneous nuclear r 99.3 2.8E-12 9.4E-17 124.0 9.7 76 335-419 3-80 (205)
349 3u1l_A PRE-mRNA-splicing facto 99.3 2.3E-12 7.7E-17 127.6 9.0 111 300-425 103-235 (240)
350 2j8a_A Histone-lysine N-methyl 99.3 2.2E-12 7.6E-17 115.3 7.9 77 226-319 3-94 (136)
351 2pe8_A Splicing factor 45; RRM 99.3 1E-11 3.4E-16 107.6 10.7 81 224-320 7-93 (105)
352 3u1l_A PRE-mRNA-splicing facto 99.3 3E-12 1E-16 126.7 8.5 76 222-320 131-228 (240)
353 3pgw_A U1-A; protein-RNA compl 99.3 7.7E-12 2.6E-16 125.2 11.2 82 332-420 5-91 (282)
354 2bz2_A Negative elongation fac 99.3 5.4E-12 1.8E-16 111.9 8.7 75 334-420 37-112 (121)
355 1fje_B Nucleolin RBD12, protei 99.3 1E-11 3.5E-16 115.0 10.4 76 223-320 97-173 (175)
356 2adc_A Polypyrimidine tract-bi 99.2 1.7E-11 5.9E-16 119.6 9.9 79 333-420 31-111 (229)
357 2dit_A HIV TAT specific factor 99.2 5.8E-11 2E-15 103.4 10.9 79 222-321 12-102 (112)
358 2dit_A HIV TAT specific factor 99.2 7.4E-11 2.5E-15 102.7 11.4 79 333-419 12-102 (112)
359 1qm9_A Polypyrimidine tract-bi 99.2 1.8E-11 6.2E-16 115.9 7.0 76 336-420 3-80 (198)
360 3sde_A Paraspeckle component 1 99.2 4E-11 1.4E-15 119.4 9.7 77 333-419 19-96 (261)
361 3v4m_A Splicing factor U2AF 65 99.2 4.2E-11 1.4E-15 103.7 8.5 80 335-418 4-96 (105)
362 3ue2_A Poly(U)-binding-splicin 99.1 1E-10 3.6E-15 103.4 9.2 80 335-418 19-108 (118)
363 1jmt_A Splicing factor U2AF 35 99.1 2.5E-11 8.4E-16 104.9 4.3 71 341-416 20-103 (104)
364 1jmt_A Splicing factor U2AF 35 99.1 3.4E-11 1.2E-15 104.0 4.4 71 230-318 20-103 (104)
365 3v4m_A Splicing factor U2AF 65 99.1 1.7E-10 5.7E-15 99.9 8.5 81 224-319 4-95 (105)
366 3ue2_A Poly(U)-binding-splicin 99.1 2.4E-10 8.2E-15 101.1 9.7 83 224-319 19-107 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.1E-09 3.9E-14 93.9 12.5 65 346-420 27-91 (100)
368 2d9o_A DNAJ (HSP40) homolog, s 99.0 3.3E-09 1.1E-13 91.0 11.0 75 225-322 10-91 (100)
369 3tht_A Alkylated DNA repair pr 99.0 1.1E-09 3.6E-14 113.9 9.1 75 222-319 15-97 (345)
370 3tht_A Alkylated DNA repair pr 98.9 1.8E-09 6.2E-14 112.1 8.9 75 333-417 15-97 (345)
371 3s6e_A RNA-binding protein 39; 98.9 3.5E-09 1.2E-13 93.0 8.4 77 335-419 6-93 (114)
372 3s6e_A RNA-binding protein 39; 98.9 4.5E-09 1.5E-13 92.4 8.5 75 224-319 6-91 (114)
373 1owx_A Lupus LA protein, SS-B, 98.7 5.8E-08 2E-12 86.1 9.4 76 332-417 14-94 (121)
374 2dnr_A Synaptojanin-1; RRM dom 98.6 6.8E-08 2.3E-12 81.0 7.4 70 226-320 8-85 (91)
375 2dnr_A Synaptojanin-1; RRM dom 98.6 1.8E-07 6.3E-12 78.4 8.4 74 334-419 5-86 (91)
376 1owx_A Lupus LA protein, SS-B, 98.5 1.5E-07 5.2E-12 83.4 7.9 73 224-319 17-94 (121)
377 1ufw_A Synaptojanin 2; RNP dom 98.3 5.8E-07 2E-11 75.8 6.3 70 225-319 15-93 (95)
378 3dxb_A Thioredoxin N-terminall 98.3 7.1E-07 2.4E-11 86.3 7.9 67 348-418 141-212 (222)
379 3dxb_A Thioredoxin N-terminall 98.3 1.2E-06 4.2E-11 84.6 8.3 70 237-319 141-211 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.2 1.7E-06 5.9E-11 72.9 6.7 73 333-417 12-93 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.0 2.5E-05 8.4E-10 67.4 8.8 71 225-318 21-97 (117)
382 2dhx_A Poly (ADP-ribose) polym 97.7 0.00012 4E-09 62.6 9.1 88 224-349 7-99 (104)
383 2dhx_A Poly (ADP-ribose) polym 97.4 0.0012 4E-08 56.4 10.0 75 335-419 7-84 (104)
384 2l9w_A U4/U6 snRNA-associated- 97.3 0.00079 2.7E-08 58.1 8.1 77 334-416 19-97 (117)
385 1wey_A Calcipressin 1; structu 96.8 0.0029 9.9E-08 54.1 7.0 73 225-320 5-83 (104)
386 1wwh_A Nucleoporin 35, nucleop 96.6 0.0077 2.6E-07 52.8 8.9 73 224-320 23-96 (119)
387 1uw4_A UPF3X; nonsense mediate 96.4 0.011 3.9E-07 49.4 8.5 71 226-311 2-73 (91)
388 1whv_A Poly(A)-specific ribonu 96.4 0.0082 2.8E-07 50.7 7.3 52 225-302 16-67 (100)
389 1uw4_A UPF3X; nonsense mediate 95.8 0.053 1.8E-06 45.2 9.4 66 337-406 2-70 (91)
390 1wey_A Calcipressin 1; structu 95.7 0.02 7E-07 48.9 6.5 74 336-419 5-84 (104)
391 3ctr_A Poly(A)-specific ribonu 95.7 0.011 3.6E-07 50.1 4.6 51 226-302 7-57 (101)
392 1whv_A Poly(A)-specific ribonu 95.1 0.06 2.1E-06 45.4 7.4 55 335-402 15-69 (100)
393 3p3d_A Nucleoporin 53; structu 94.7 0.049 1.7E-06 48.4 6.2 87 226-319 8-97 (132)
394 2l08_A Regulator of nonsense t 94.4 0.07 2.4E-06 45.0 6.1 72 225-311 9-81 (97)
395 3ctr_A Poly(A)-specific ribonu 94.0 0.073 2.5E-06 45.0 5.3 53 337-402 7-59 (101)
396 3pq1_A Poly(A) RNA polymerase; 93.9 0.03 1E-06 60.0 3.6 56 225-303 53-108 (464)
397 1wwh_A Nucleoporin 35, nucleop 93.8 0.2 6.7E-06 43.9 8.0 73 335-418 23-96 (119)
398 2l08_A Regulator of nonsense t 93.0 0.19 6.4E-06 42.4 6.2 65 335-403 8-74 (97)
399 3p3d_A Nucleoporin 53; structu 87.4 0.45 1.5E-05 42.2 3.9 80 335-419 6-99 (132)
400 3pq1_A Poly(A) RNA polymerase; 87.1 0.33 1.1E-05 51.9 3.5 57 336-402 53-109 (464)
401 3d45_A Poly(A)-specific ribonu 80.7 3.4 0.00012 44.6 8.1 52 225-302 440-491 (507)
402 3d45_A Poly(A)-specific ribonu 65.3 18 0.00061 39.0 9.0 55 336-403 440-494 (507)
403 4e8u_A Putative uncharacterize 25.7 85 0.0029 28.9 5.1 60 226-305 13-84 (172)
404 2g0c_A ATP-dependent RNA helic 25.6 1.2E+02 0.0041 23.1 5.5 62 347-417 12-75 (76)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=5.6e-32 Score=256.62 Aligned_cols=177 Identities=15% Similarity=0.316 Sum_probs=149.6
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++|+++|.++|+.||.|.+|.|+.++. +|.++|||||+|.+.++|..||
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~A~ 72 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN-----------------TKRSRGFGFVTYATVEEVDAAM 72 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCC-----------------CCCccceEEEEeCCHHHHHHHH
Confidence 34578999999999999999999999999999999966542 3457899999999999999999
Q ss_pred HhcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCC
Q 008928 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~s 381 (548)
.+++..|.|+.|.|.++........ .......++|||+|||+.+++++|+++|+.| |.|..|.|+.+..+|.+
T Consensus 73 ~~~~~~~~g~~l~v~~~~~~~~~~~---~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~ 145 (196)
T 1l3k_A 73 NARPHKVDGRVVEPKRAVSREDSQR---PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY----GKIEVIEIMTDRGSGKK 145 (196)
T ss_dssp HTCSCEETTEECEEEECCC--------------CCSEEEEECCTTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCE
T ss_pred hcCCCEECCEEeeeecccCcccccc---cccCCCcceEEEeCCCCCCCHHHHHHHHhcC----CCeEEEEEeecCCCCCc
Confidence 8899999999999999875432211 1123356899999999999999999999999 89999999999889999
Q ss_pred ceEEEEEECCHHHHHHHHHHcCCccCCeEEEEEeeecCCCC
Q 008928 382 KGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHAQQNCTP 422 (548)
Q Consensus 382 rG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~Ak~~~~~ 422 (548)
+|||||+|.+.++|..||..++..|+|+.|.|.|+.++...
T Consensus 146 ~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 146 RGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp EEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-----
T ss_pred cceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCChhHh
Confidence 99999999999999999988779999999999999887444
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.9e-31 Score=245.42 Aligned_cols=164 Identities=23% Similarity=0.367 Sum_probs=148.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhc
Q 008928 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (548)
++|||+|||+++|+++|.++|+.||.|.+|.|+.++ .+.++|||||+|.+.++|..|+ .||
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~------------------~~~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK------------------NNKNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC------------------C-CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC------------------CCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 589999999999999999999999999999996543 2347799999999999999999 799
Q ss_pred ceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceE
Q 008928 305 MAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI 384 (548)
Q Consensus 305 g~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~ 384 (548)
+..+.|+.|.|.++.+... .......+|||+|||+.+++++|+++|+.| |.|..|.|+.+..+|.++||
T Consensus 63 ~~~~~g~~i~v~~~~~~~~-------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~ 131 (166)
T 3md3_A 63 GKQIENNIVKINWAFQSQQ-------SSSDDTFNLFVGDLNVNVDDETLRNAFKDF----PSYLSGHVMWDMQTGSSRGY 131 (166)
T ss_dssp TCEETTEECEEEECCCCCC-------CCCTTCEEEEEESCCTTCCHHHHHHHHTTS----TTEEEEEEEECTTTCCEEEE
T ss_pred CCccCCCeeEEEEcCCCCC-------CCCCCCceEEECCCCCCCCHHHHHHHHhcc----CCeeEEEEEecCCCCCcceE
Confidence 9999999999999865432 234567899999999999999999999999 99999999999999999999
Q ss_pred EEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeec
Q 008928 385 AYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQ 418 (548)
Q Consensus 385 AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~ 418 (548)
|||+|.+.++|..|+..++ ..|+|+.|.|.||.+
T Consensus 132 afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 132 GFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999777 999999999999863
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=6.9e-31 Score=255.18 Aligned_cols=166 Identities=25% Similarity=0.391 Sum_probs=146.5
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..+||||+|||+++|+++|+++|+.||.|.+|+|+.+.. ++.++|||||+|.+.++|..|| .
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----------------tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-----------------TRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccC-----------------CCCccccccceeCCHHHHHHHHHH
Confidence 358999999999999999999999999999999976542 3457899999999999999999 5
Q ss_pred hcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCc
Q 008928 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~sr 382 (548)
+|+..+.|+.|.|.++...... ......+|||+|||+.+++++|+++|+.| |.|..|+|++|. +.++
T Consensus 77 ~~~~~~~g~~i~~~~~~~~~~~-------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~~~i~~d~--~~~~ 143 (213)
T 4f02_A 77 MNFDVIKGKPVRIMWSQRDPSL-------RKSGVGNIFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDE--NGSK 143 (213)
T ss_dssp HTTCEETTEECEEEECCCCTHH-------HHHCTTEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEET--TEEE
T ss_pred hhhhhcCCcccccccccccccc-------cccccccceECCcccccHHHHHHHHHhhc----CCeEEEEeeccC--CCCc
Confidence 9999999999999998653211 12245789999999999999999999999 899999999984 4579
Q ss_pred eEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008928 383 GIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 383 G~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
|||||+|.+.++|..||..|| ..|+|+.|.|.||.++
T Consensus 144 g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 144 GYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred eEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 999999999999999998877 9999999999999864
No 4
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=3.6e-31 Score=244.78 Aligned_cols=165 Identities=19% Similarity=0.401 Sum_probs=146.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHh
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (548)
+.++|||+|||+++|+++|.++|+.||.|.+|.|+.++ .+|.++|||||+|.+.++|..||..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDP-----------------ATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCT-----------------TTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECC-----------------CCCCccceEEEEEccHHHHHHHHhc
Confidence 46899999999999999999999999999999985543 2356889999999999999999973
Q ss_pred cceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCce
Q 008928 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG 383 (548)
+..|.|+.|.|.++.+... .....+|||+|||+.+++++|+++|+.| |.|..|.|+.+..+|.++|
T Consensus 65 -~~~~~g~~i~v~~~~~~~~---------~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~g~~~g 130 (167)
T 2cjk_A 65 -QHILDGKVIDPKRAIPRDE---------QDKTGKIFVGGIGPDVRPKEFEEFFSQW----GTIIDAQLMLDKDTGQSRG 130 (167)
T ss_dssp -CCEETTEECCCEECCCHHH---------HHHCEEEEEEEECTTCCHHHHHHHHHTT----SCCSEEECCCSSSSSTTSE
T ss_pred -ccccCCeEcccccccchhh---------ccCCCeEEECCCCCCCCHHHHHHHHHhC----ccEEEEEEEEcCCCCccce
Confidence 6789999999999865321 2346799999999999999999999999 8999999999988999999
Q ss_pred EEEEEECCHHHHHHHHHHcCCccCCeEEEEEeeecC
Q 008928 384 IAYVLFKTREAANLVIKRRNLKLRDRELRLSHAQQN 419 (548)
Q Consensus 384 ~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~Ak~~ 419 (548)
||||+|.+.++|.+|+.+.+..|.|+.|.|.||.++
T Consensus 131 ~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 131 FGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred EEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 999999999999999984339999999999999874
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=3e-30 Score=238.50 Aligned_cols=162 Identities=22% Similarity=0.325 Sum_probs=146.8
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
.++|||+|||+++++++|.++|+.||.|.+|.|+.++ .+|.++|||||+|.+.++|..|+ .|
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~A~~a~~~l 65 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY-----------------KTGYSYGYAFVDFTSEMDSQRAIKVL 65 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET-----------------TTTEECSEEEEEESSHHHHHHHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeC-----------------CCCccceEEEEEECCHHHHHHHHHhc
Confidence 5899999999999999999999999999999986543 13457799999999999999999 49
Q ss_pred cceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCce
Q 008928 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG 383 (548)
++..|.|+.|.|.++.+.. ......+|||+|||..+++++|+++|+.| |.|..|.|+.+..+|.++|
T Consensus 66 ~~~~~~g~~l~v~~~~~~~---------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g 132 (168)
T 1b7f_A 66 NGITVRNKRLKVSYARPGG---------ESIKDTNLYVTNLPRTITDDQLDTIFGKY----GSIVQKNILRDKLTGRPRG 132 (168)
T ss_dssp TTCEETTEECEEEECCCCS---------STTTTCEEEEESCCTTCCHHHHHHHHTSS----SCEEEEEEEECTTTCCEEE
T ss_pred CCCEeCCcEEEEEecCCCc---------ccCCCCCEEEeCCCCCCCHHHHHHhhhcC----CcEEEEEEEEcCCCCCcce
Confidence 9999999999999987532 23456899999999999999999999999 8999999999988999999
Q ss_pred EEEEEECCHHHHHHHHHHcC-CccCC--eEEEEEee
Q 008928 384 IAYVLFKTREAANLVIKRRN-LKLRD--RELRLSHA 416 (548)
Q Consensus 384 ~AFV~F~~~e~A~~Al~~ln-~~l~G--r~I~V~~A 416 (548)
||||+|.+.++|..|+..++ ..|.| ++|+|.||
T Consensus 133 ~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 133 VAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999999999887 88877 99999986
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=4.2e-30 Score=236.59 Aligned_cols=162 Identities=20% Similarity=0.318 Sum_probs=146.0
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-h
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~-l 303 (548)
.++|||+|||+++++++|.++|+.||.|..|.|+.++. +|.++|||||+|.+.++|..|+. |
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~-----------------~~~~~g~afV~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-----------------TGQSLGYGFVNYIDPKDAEKAINTL 64 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-----------------CCcceeEEEEEECCHHHHHHHHHHc
Confidence 47999999999999999999999999999999966431 34577999999999999999995 9
Q ss_pred cceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCce
Q 008928 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG 383 (548)
|+..+.|+.|.|.++.+.. ......+|||+|||..+++++|+++|+.| |.|..|.|+.+..+|.++|
T Consensus 65 ~~~~~~g~~l~v~~~~~~~---------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g 131 (167)
T 1fxl_A 65 NGLRLQTKTIKVSYARPSS---------ASIRDANLYVSGLPKTMTQKELEQLFSQY----GRIITSRILVDQVTGVSRG 131 (167)
T ss_dssp TTCEETTEECEEEECCCCC---------GGGTTCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEE
T ss_pred CCCccCCceEEEEecCCCc---------ccCCCCcEEECCCCCcCCHHHHHHHHHhc----CCEeEEEEEecCCCCCccc
Confidence 9999999999999987532 23356889999999999999999999999 8999999999988999999
Q ss_pred EEEEEECCHHHHHHHHHHcC-CccCCeE--EEEEee
Q 008928 384 IAYVLFKTREAANLVIKRRN-LKLRDRE--LRLSHA 416 (548)
Q Consensus 384 ~AFV~F~~~e~A~~Al~~ln-~~l~Gr~--I~V~~A 416 (548)
||||+|.+.++|..|+..++ ..|.|+. |.|.||
T Consensus 132 ~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 132 VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred eEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 99999999999999999877 8999964 999886
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1.5e-30 Score=250.49 Aligned_cols=178 Identities=18% Similarity=0.347 Sum_probs=150.9
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-h
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~-l 303 (548)
.++|||+|||+++|+++|+++|+.||.|..|.|+.+. .++.++|||||+|.+.++|..||. |
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~A~~A~~~l 90 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDS-----------------VTMKHKGFAFVEYEVPEAAQLALEQM 90 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC------------------CC-CCCSEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecC-----------------CCCccCceEEEEeCCHHHHHHHHHHc
Confidence 5799999999999999999999999999999995543 134578999999999999999995 9
Q ss_pred cceeecCceeEeecCCCcccccCC--CCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCC
Q 008928 304 NMAVIGGNHIRLDRACPPRKKLKG--EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~k~~~~--~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~s 381 (548)
|+..|.|+.|.|.++......... .........++|||+|||+.+++++|+++|+.| |.|..|.|+.+..+|.+
T Consensus 91 ~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~g~~ 166 (216)
T 2qfj_A 91 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF----GKIKSATLARDPTTGKH 166 (216)
T ss_dssp SSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTS----SCEEEEEEEECTTTCCE
T ss_pred cCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhcc----CCeeEEEEEecCCCCCc
Confidence 999999999999987653211000 000112456899999999999999999999999 89999999999999999
Q ss_pred ceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecCCCCC
Q 008928 382 KGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQNCTPS 423 (548)
Q Consensus 382 rG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~~~~~ 423 (548)
+|||||+|.+.++|..||..|+ ..|+|+.|.|.|+.+...+.
T Consensus 167 ~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 167 KGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred CceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 9999999999999999999877 99999999999999874443
No 8
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.6e-29 Score=234.79 Aligned_cols=157 Identities=22% Similarity=0.454 Sum_probs=142.0
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhc----C-------CeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEec
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKF----G-------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~f----G-------~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~ 292 (548)
+.++|||+|||+++|+++|.++|+.| | .|.++.+. .++|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----------------------~~~g~afV~f~ 59 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----------------------QDKNFAFLEFR 59 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----------------------TTTTEEEEEES
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----------------------CCCCEEEEEeC
Confidence 46899999999999999999999999 6 66666652 25799999999
Q ss_pred CHHHHHHHHHhcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEE
Q 008928 293 SEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRV 372 (548)
Q Consensus 293 s~e~A~~Al~lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI 372 (548)
+.++|..||.+|+..|.|+.|.|.++.... ......+|||+|||+.+++++|+++|+.| |.|..|.|
T Consensus 60 ~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~---------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i 126 (172)
T 2g4b_A 60 SVDETTQAMAFDGIIFQGQSLKIRRPHDYQ---------PLPGAHKLFIGGLPNYLNDDQVKELLTSF----GPLKAFNL 126 (172)
T ss_dssp SHHHHHHHGGGTTCEETTEECEEECCSSCC---------CCTTTTCEEEECCCTTCCHHHHHHHHHTT----SCEEEEEE
T ss_pred CHHHHHHHHHhCCcEecCceeeecCCcccC---------CCCCCCEEEEEcCCCcCCHHHHHHHHHhc----CCceEEEE
Confidence 999999999999999999999999875421 12347899999999999999999999999 89999999
Q ss_pred eecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEee
Q 008928 373 IRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHA 416 (548)
Q Consensus 373 ~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~A 416 (548)
+.++.+|.++|||||+|.+.++|..|+..++ ..|+|+.|.|.||
T Consensus 127 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 127 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9998899999999999999999999999877 9999999999997
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=2.7e-29 Score=238.45 Aligned_cols=170 Identities=21% Similarity=0.414 Sum_probs=145.6
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcC-----------CeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEec
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG-----------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG-----------~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~ 292 (548)
..++|||+|||+++|+++|.++|+.|| .|..+.+ +.++|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----------------------~~~~g~afV~F~ 59 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----------------------NQDKNFAFLEFR 59 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----------------------ETTTTEEEEEES
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----------------------cCCCCEEEEEeC
Confidence 468999999999999999999999994 4555544 236799999999
Q ss_pred CHHHHHHHHHhcceeecCceeEeecCCCcccccCCC-----------CCCcCCCccEEEEeCCCCCCCHHHHHHHHhccC
Q 008928 293 SEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGE-----------DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLN 361 (548)
Q Consensus 293 s~e~A~~Al~lng~~~~gr~I~V~~a~~~~k~~~~~-----------~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g 361 (548)
+.++|..||.||+..|.|+.|.|.++.......... ........++|||+|||+.+++++|+++|+.|
T Consensus 60 ~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~- 138 (198)
T 2yh0_A 60 SVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSF- 138 (198)
T ss_dssp CSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTB-
T ss_pred CHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHc-
Confidence 999999999999999999999999986542211100 01122467899999999999999999999999
Q ss_pred CCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecCC
Q 008928 362 DLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQNC 420 (548)
Q Consensus 362 ~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~~ 420 (548)
|.|..|.|+.+..+|.++|||||+|.+.++|..|+..|+ ..|.|+.|.|.|+.+..
T Consensus 139 ---G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 139 ---GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp ---SCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred ---CCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 899999999998899999999999999999999999877 99999999999998753
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=5.9e-29 Score=230.97 Aligned_cols=166 Identities=19% Similarity=0.313 Sum_probs=141.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
+.++|||+|||+++|+++|.++|+.||.|.+|+|+.+..+. .+.++|||||+|.+.++|..|+ .
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~---------------~~~~~g~afV~f~~~~~A~~A~~~ 66 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN---------------PPQSKGCCFVTFYTRKAALEAQNA 66 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSS---------------SCEEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCC---------------CCCcceEEEEEECCHHHHHHHHHH
Confidence 35899999999999999999999999999999997765321 1147799999999999999999 5
Q ss_pred hcceeec---CceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCC
Q 008928 303 FNMAVIG---GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR 379 (548)
Q Consensus 303 lng~~~~---gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg 379 (548)
|++..+. ++.|.|.++.... ......++|||+|||+.+++++|+++|+.| |.|..|.|+.+. +|
T Consensus 67 l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~v~~~~~~-~g 133 (175)
T 3nmr_A 67 LHNMKVLPGMHHPIQMKPADSEK--------NNAVEDRKLFIGMISKKCTENDIRVMFSSF----GQIEECRILRGP-DG 133 (175)
T ss_dssp HTTTCCCTTCSSCCEEEECGGGC--------CSCGGGSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECT-TS
T ss_pred hcCcEEccCCccceEEccccccc--------cccCCCCeEEEcCCCCcCCHHHHHHHHHhC----CCEEEEEEEECC-CC
Confidence 8988775 5678887765432 123357899999999999999999999999 899999999995 69
Q ss_pred CCceEEEEEECCHHHHHHHHHHcC-CccC---CeEEEEEeee
Q 008928 380 VGKGIAYVLFKTREAANLVIKRRN-LKLR---DRELRLSHAQ 417 (548)
Q Consensus 380 ~srG~AFV~F~~~e~A~~Al~~ln-~~l~---Gr~I~V~~Ak 417 (548)
.++|||||+|.+.++|..||..++ ..+. |++|.|.||.
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 134 LSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999999999998887 5554 4999999983
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=1.8e-29 Score=235.75 Aligned_cols=164 Identities=20% Similarity=0.325 Sum_probs=141.8
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++|+++|+++|..||.|..+.++. ..++.++|||||+|.+.++|..||
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~------------------~~~~~~~g~afV~f~~~~~a~~A~ 71 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVD------------------VRTGTNRKFGYVDFESAEDLEKAL 71 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCE------------------EEEETTTTEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEE------------------CCCCccccEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999876633211 124568899999999999999999
Q ss_pred HhcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCC
Q 008928 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~s 381 (548)
+||+..|.|+.|.|.++.+... ......++|||+|||+.+++++|+++|+.| |.|..| ..++.+
T Consensus 72 ~l~g~~~~g~~l~v~~~~~~~~-------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~----g~v~~~-----~~~~~~ 135 (175)
T 1fje_B 72 ELTGLKVFGNEIKLEKPKGRDS-------KKVRAARTLLAKNLSFNITEDELKEVFEDA----LEIRLV-----SQDGKS 135 (175)
T ss_dssp HGGGEEETTEEEEEECCCCSSC-------STTGGGGEEEEESCCSSCCHHHHHHHCTTC----SEEEEE-----CSSSSC
T ss_pred hcCCCEeCCeEEEEecCCCccc-------cccccCCEEEEeCCCCCCCHHHHHHHHHhc----CeEEEe-----cCCCCC
Confidence 9999999999999999875432 223467899999999999999999999999 877655 467899
Q ss_pred ceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008928 382 KGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 382 rG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
+|||||+|.+.++|..||..|+ ..|.|+.|.|.||.++
T Consensus 136 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 136 KGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999999999999999887 9999999999999875
No 12
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=3.4e-28 Score=245.92 Aligned_cols=160 Identities=21% Similarity=0.278 Sum_probs=137.1
Q ss_pred CCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 221 ~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
.+...++|||+|||+++|+++|.++|+.||.|.+|.|+.++. .++|||||+|.+.++|..|
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------------------~~~g~afV~f~~~~~A~~A 97 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-------------------KNFRFARIEFARYDGALAA 97 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-------------------SSSEEEEEEESSHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-------------------CCcEEEEEEECCHHHHHHH
Confidence 345578999999999999999999999999999999966441 1469999999999999999
Q ss_pred HHhcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCC-CeEEEEEeecCCCC
Q 008928 301 LAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLES-SVEAVRVIRHPHMR 379 (548)
Q Consensus 301 l~lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G-~I~~VrI~~d~~tg 379 (548)
|++++..|.|+.|.|.++ ..++|||+|||+.+++++|+++|..| | .|..|.|+.+.. |
T Consensus 98 ~~~~~~~~~g~~i~v~~~----------------~~~~l~v~nlp~~~t~~~l~~~f~~~----G~~i~~v~i~~~~~-~ 156 (292)
T 2ghp_A 98 ITKTHKVVGQNEIIVSHL----------------TECTLWMTNFPPSYTQRNIRDLLQDI----NVVALSIRLPSLRF-N 156 (292)
T ss_dssp HTTTTCEETTEECEEEEC----------------CSCEEEEECCCTTCCHHHHHHHHHHT----TCCCCEEECC------
T ss_pred HHhCCcEeCCcEEEEEEC----------------CCCEEEEECCCCCCCHHHHHHHHHHh----CCCeEEEEEEeCCC-C
Confidence 999999999999999986 25899999999999999999999999 9 999999999865 8
Q ss_pred CCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecCC
Q 008928 380 VGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQNC 420 (548)
Q Consensus 380 ~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~~ 420 (548)
.++|||||+|.+.++|..|+..++ ..|.|+.|.|.|+.+..
T Consensus 157 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 157 TSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp --CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 899999999999999999999776 99999999999998653
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=1.1e-27 Score=242.23 Aligned_cols=171 Identities=18% Similarity=0.277 Sum_probs=143.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcC-CeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG-~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
..++|||+|||+.+++++|.++|+.|| .|..|.|+.+. .|.++|||||+|.+.++|..|+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~------------------~~~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR------------------FNTSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------------------------CCEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC------------------CCCcceEEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999 99999985543 23477999999999999999995
Q ss_pred -hcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCC-CCHHHHHHHHhccCCCCCCeEEEEEeecCC-CC
Q 008928 303 -FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPH-MR 379 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~-~teedL~~~F~~~g~~~G~I~~VrI~~d~~-tg 379 (548)
||+..|.|+.|.|.++.+....... ........+|||+|||+. +++++|+++|+.| |.|..|.|+.+.. ||
T Consensus 178 ~l~g~~~~g~~l~v~~a~~~~~~~~~--~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~tg 251 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNPLEKSKRT--DSATLEGREIMIRNLSTELLDENLLRESFEGF----GSIEKINIPAGQKEHS 251 (292)
T ss_dssp HHTTCEETTEECEEEECCCC-----------CCTTTEEEEEEECTTTCCHHHHHHHHGGG----SCEEEEECCSCCC---
T ss_pred HhCCCEeCCcEEEEEECCCCcccccc--cccCCCCceEEEECCCcccCCHHHHHHHHhcc----CCeeEEEEEecCCcCC
Confidence 9999999999999998765432211 123456789999999999 9999999999999 8999999999876 59
Q ss_pred CCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008928 380 VGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 380 ~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
.++|||||+|.+.++|..|| .++ ..|.|+.|.|.|+.++
T Consensus 252 ~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 252 FNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999999 877 9999999999999875
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=2.7e-27 Score=238.46 Aligned_cols=168 Identities=15% Similarity=0.162 Sum_probs=149.9
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
.++|||+|||+.+|+++|.++|+.||.|..|.|+.+.. +|.++|||||+|.+.++|..|+ .|
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~~~l 157 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER-----------------TGQSKGYGFAEYMKKDSAARAKSDL 157 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC-----------------CCccceEEEEEECCHHHHHHHHHHh
Confidence 47999999999999999999999999999999865432 3457899999999999999999 79
Q ss_pred cceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCC-CHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCc
Q 008928 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDV-KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~-teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~sr 382 (548)
++..|.|+.|.|.++.+... .......++|||+|||+.+ ++++|+++|+.| |.|..|.|+.+. +|.++
T Consensus 158 ~~~~~~g~~i~v~~a~~~~~------~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~----G~i~~v~i~~~~-~g~~~ 226 (284)
T 3smz_A 158 LGKPLGPRTLYVHWTDAGQL------TPALLHSRCLCVDRLPPGFNDVDALCRALSAV----HSPTFCQLACGQ-DGQLK 226 (284)
T ss_dssp TTCEETTEECEEEECCGGGC------CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSS----SCCSEEEEEECS-SCCEE
T ss_pred CCCEeCCcEEEEEECCCCCC------CcccCCccEEEEecCCcccCCHHHHHHHhhCC----CCeEEEEEEECC-CCCcc
Confidence 99999999999999976432 1223467899999999995 999999999999 899999999996 79999
Q ss_pred eEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecCC
Q 008928 383 GIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQNC 420 (548)
Q Consensus 383 G~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~~ 420 (548)
|||||+|.+.++|..|+..++ ..|.|+.|.|.|+.+..
T Consensus 227 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 227 GFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp EEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred cEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 999999999999999999887 99999999999998753
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=2.8e-27 Score=229.60 Aligned_cols=165 Identities=13% Similarity=0.190 Sum_probs=137.4
Q ss_pred cccEEEEcCCC-CCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 224 LLRTIFVGNLP-LKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 224 ~~rtVfVgNLP-~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
..++|||+||| +.+|+++|.++|+.||.|.+|+|+.+ .+|||||+|.+.++|+.||
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----------------------KPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----------------------STTCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----------------------CCCEEEEEECCHHHHHHHHH
Confidence 35899999999 89999999999999999999998421 3589999999999999999
Q ss_pred HhcceeecCceeEeecCCCcccccCC-----CC-----------------------CCcCCCccEEEEeCCCCCCCHHHH
Q 008928 302 AFNMAVIGGNHIRLDRACPPRKKLKG-----ED-----------------------APLYDIKKTVFVGNLPFDVKDEEI 353 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~~k~~~~-----~~-----------------------~~~~~~~~tLfV~NLp~~~teedL 353 (548)
.|||..|.|+.|.|.++......... .. .....+..+|||+|||+.+++++|
T Consensus 61 ~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L 140 (205)
T 3tyt_A 61 HLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENF 140 (205)
T ss_dssp HHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHH
T ss_pred HhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHH
Confidence 59999999999999998643210000 00 001235678999999999999999
Q ss_pred HHHHhccCCCCCCe--EEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCe----EEEEEee
Q 008928 354 YQLFCGLNDLESSV--EAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDR----ELRLSHA 416 (548)
Q Consensus 354 ~~~F~~~g~~~G~I--~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr----~I~V~~A 416 (548)
+++|+.| |.| ..|+|+.+. +..+|||||+|.+.++|..||..|| ..|.|+ ++.|.||
T Consensus 141 ~~~F~~~----G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 141 FEICDEL----GVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHH----TCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHhc----CCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9999999 888 889988874 5567999999999999999999888 888885 6888776
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=7.2e-27 Score=235.07 Aligned_cols=167 Identities=22% Similarity=0.329 Sum_probs=141.2
Q ss_pred CCcccEEEEcCCCCCCcHHHHH----HHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~----~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A 297 (548)
....++|||+|||+++|+++|+ ++|+.||.|..|+|+. ++.++|||||+|.+.++|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--------------------~~~~~g~afV~f~~~~~a 65 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--------------------SLKMRGQAFVIFKEVSSA 65 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--------------------CCCcceEEEEEECCHHHH
Confidence 3457899999999999999966 8999999999998842 344779999999999999
Q ss_pred HHHH-HhcceeecCceeEeecCCCcccccC---C----------------------------------------------
Q 008928 298 EAAL-AFNMAVIGGNHIRLDRACPPRKKLK---G---------------------------------------------- 327 (548)
Q Consensus 298 ~~Al-~lng~~~~gr~I~V~~a~~~~k~~~---~---------------------------------------------- 327 (548)
..|| .|||..|.|+.|.|.++........ +
T Consensus 66 ~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (282)
T 3pgw_A 66 TNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMP 145 (282)
T ss_pred HHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCC
Confidence 9999 6999999999999999864321000 0
Q ss_pred -----------------------------------------------------CCCCcCCCccEEEEeCCCCCCCHHHHH
Q 008928 328 -----------------------------------------------------EDAPLYDIKKTVFVGNLPFDVKDEEIY 354 (548)
Q Consensus 328 -----------------------------------------------------~~~~~~~~~~tLfV~NLp~~~teedL~ 354 (548)
.........++|||+|||+.+++++|+
T Consensus 146 ~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 225 (282)
T 3pgw_A 146 PMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLS 225 (282)
T ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHH
Confidence 000122356889999999999999999
Q ss_pred HHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccC-CeEEEEEeee
Q 008928 355 QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLR-DRELRLSHAQ 417 (548)
Q Consensus 355 ~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~-Gr~I~V~~Ak 417 (548)
++|+.| |.|..|.|+.+. +|||||+|.+.++|..||..|+ ..|. |+.|+|.|++
T Consensus 226 ~~F~~~----G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 226 MLFNQF----PGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHhc----CCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 999999 899999999763 5899999999999999999888 8888 9999999986
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=4.3e-27 Score=235.48 Aligned_cols=155 Identities=24% Similarity=0.305 Sum_probs=141.0
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++|+++|.++|+.||.|..|.|.. ++|||||+|.+.++|..|+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----------------------~kg~afV~f~~~~~A~~A~ 75 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----------------------DRGFGFIRLESRTLAEIAK 75 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCcEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999999999832 4699999999999999999
Q ss_pred H-hcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCC
Q 008928 302 A-FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (548)
Q Consensus 302 ~-lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~ 380 (548)
. +|+..|.|+.|.|.++.+ ..+|||+|||+.+++++|+++|+.| |.|..|.|+.+ .+|.
T Consensus 76 ~~l~g~~i~g~~l~v~~a~~---------------~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~-~~g~ 135 (261)
T 3sde_A 76 AELDGTILKSRPLRIRFATH---------------GAALTVKNLSPVVSNELLEQAFSQF----GPVEKAVVVVD-DRGR 135 (261)
T ss_dssp HHHTTCEETTEECEEEECCC---------------SSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEE-TTSC
T ss_pred HHcCCcEECCceeEeeeccc---------------CCcccccCCCCCCCHHHHHHHHHhc----CCeEEEEeeeC-CCCC
Confidence 4 999999999999999852 4789999999999999999999999 89999999999 6899
Q ss_pred CceEEEEEECCHHHHHHHHHHcC--CccC---CeEEEEEeeecC
Q 008928 381 GKGIAYVLFKTREAANLVIKRRN--LKLR---DRELRLSHAQQN 419 (548)
Q Consensus 381 srG~AFV~F~~~e~A~~Al~~ln--~~l~---Gr~I~V~~Ak~~ 419 (548)
++|||||+|.+.++|..||..++ ..+. |++|.|.++.+.
T Consensus 136 ~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 136 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred cCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 99999999999999999999884 4444 899999999864
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=7.5e-27 Score=235.19 Aligned_cols=153 Identities=16% Similarity=0.236 Sum_probs=141.6
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
.++|||+|||+++|+++|.++|+.|| |.+|.+ +.++|||||+|.+.++|..|+ .|
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-----------------------~~~~g~afV~f~~~~~A~~A~~~l 77 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-----------------------DKYKGTAFVTLLNGEQAEAAINAF 77 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-----------------------ETTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-----------------------ecCCCEEEEEeCCHHHHHHHHHHc
Confidence 58999999999999999999999999 988887 126799999999999999999 58
Q ss_pred cceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCce
Q 008928 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG 383 (548)
|+..|.|+.|.|.++. ...+|||+|||+.+++++|+++|+.| |.|..|.|+.+..+|.++|
T Consensus 78 ~~~~~~g~~i~v~~~~---------------~~~~l~v~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g 138 (284)
T 3smz_A 78 HQSRLRERELSVQLQP---------------TDALLCVANLPPSLTQQQFEELVRPF----GSLERCFLVYSERTGQSKG 138 (284)
T ss_dssp TTCEETTEECEEEECC---------------CSCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEE
T ss_pred CCCeeCCeEEEEEecC---------------CCCEEEEcCCCCcCCHHHHHHHHHhc----CCeeEEEEEeeCCCCccce
Confidence 9999999999999853 34789999999999999999999999 8999999999999999999
Q ss_pred EEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecCC
Q 008928 384 IAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQNC 420 (548)
Q Consensus 384 ~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~~ 420 (548)
||||+|.+.++|..|+..++ ..|.|+.|.|.|+.+..
T Consensus 139 ~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 139 YGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred EEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 99999999999999997777 99999999999998753
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=2.5e-26 Score=225.48 Aligned_cols=166 Identities=19% Similarity=0.295 Sum_probs=140.4
Q ss_pred CcccEEEEcCCCC-CCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 223 KLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~-~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
...++|||+|||+ ++++++|.++|+.||.|..|.|+.+ .+|||||+|.+.++|..||
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~----------------------~~g~afV~F~~~~~A~~Ai 89 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN----------------------KKENALVQMADGNQAQLAM 89 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT----------------------TSCCEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEEC----------------------CCCEEEEEECCHHHHHHHH
Confidence 3468999999999 9999999999999999999999432 2489999999999999999
Q ss_pred H-hcceeecCceeEeecCCCcccccCCC--------------------------CCCcCCCccEEEEeCCCCCCCHHHHH
Q 008928 302 A-FNMAVIGGNHIRLDRACPPRKKLKGE--------------------------DAPLYDIKKTVFVGNLPFDVKDEEIY 354 (548)
Q Consensus 302 ~-lng~~~~gr~I~V~~a~~~~k~~~~~--------------------------~~~~~~~~~tLfV~NLp~~~teedL~ 354 (548)
. ||+..|.|+.|.|.++.......... ......+.++|||+|||+.+++++|+
T Consensus 90 ~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~ 169 (229)
T 2adc_A 90 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 169 (229)
T ss_dssp HHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHH
T ss_pred HHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHH
Confidence 4 99999999999999987531110000 00113447899999999999999999
Q ss_pred HHHhccCCCCC-CeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccC-CeEEEEEeeecC
Q 008928 355 QLFCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLR-DRELRLSHAQQN 419 (548)
Q Consensus 355 ~~F~~~g~~~G-~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~-Gr~I~V~~Ak~~ 419 (548)
++|..| | .|..|.|+.+ .+|||||+|.+.++|..||..|+ ..|. |+.|.|.|+.+.
T Consensus 170 ~~f~~~----G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 170 VLFSSN----GGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHTT----SCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHc----CCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999 8 9999999764 37899999999999999999777 8888 999999999864
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=1.1e-26 Score=221.53 Aligned_cols=164 Identities=20% Similarity=0.306 Sum_probs=139.6
Q ss_pred ccEEEEcCCCC-CCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-
Q 008928 225 LRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (548)
Q Consensus 225 ~rtVfVgNLP~-~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (548)
.++|||+|||+ ++++++|.++|+.||.|..|.|+.+ .+|||||+|.+.++|..||.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~~ 60 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN----------------------KKENALVQMADGNQAQLAMSH 60 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT----------------------CSSCCEEECTTTHHHHHHHHH
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 57999999999 9999999999999999999998432 24899999999999999995
Q ss_pred hcceeecCceeEeecCCCcccccCCC--------------------------CCCcCCCccEEEEeCCCCCCCHHHHHHH
Q 008928 303 FNMAVIGGNHIRLDRACPPRKKLKGE--------------------------DAPLYDIKKTVFVGNLPFDVKDEEIYQL 356 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~k~~~~~--------------------------~~~~~~~~~tLfV~NLp~~~teedL~~~ 356 (548)
||+..|.|+.|.|.++.......... ......+.++|||+|||..+++++|+++
T Consensus 61 l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 140 (198)
T 1qm9_A 61 LNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVL 140 (198)
T ss_dssp HTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHH
T ss_pred hCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHH
Confidence 99999999999999987532110000 0111345789999999999999999999
Q ss_pred HhccCCCCC-CeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccC-CeEEEEEeeecC
Q 008928 357 FCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLR-DRELRLSHAQQN 419 (548)
Q Consensus 357 F~~~g~~~G-~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~-Gr~I~V~~Ak~~ 419 (548)
|+.| | .|..|.|+.+. +|||||+|.+.++|..|+..++ ..|. |+.|.|.|+.+.
T Consensus 141 f~~~----G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 141 FSSN----GGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHT----TSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHc----CCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999 8 99999997652 7899999999999999999887 8888 999999999864
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=1.4e-20 Score=173.76 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=105.8
Q ss_pred CCcceEEEEecCHHHHHHHH-HhcceeecCceeEeecCCCcccc----cCCCCCCcCCCccEEEEeCCCCCCCHHHHHHH
Q 008928 282 ADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPRKK----LKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQL 356 (548)
Q Consensus 282 ~skG~AFV~F~s~e~A~~Al-~lng~~~~gr~I~V~~a~~~~k~----~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~ 356 (548)
.++|||||+|.+.++|++|+ .+++....+..+.+......... .............+|||+|||+.+++++|+++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 47899999999999999999 46543332322333222111000 00011222345789999999999999999999
Q ss_pred HhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecCC
Q 008928 357 FCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQNC 420 (548)
Q Consensus 357 F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~~ 420 (548)
|+.| |.|..|.|+.|+.+|.++|||||+|.+.++|..||..|+ ..|.|+.|.|.|+.+..
T Consensus 91 F~~~----G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 91 FEKY----GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHH----SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHhc----CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 9999 899999999999899999999999999999999999887 89999999999998753
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1.2e-19 Score=159.50 Aligned_cols=108 Identities=18% Similarity=0.271 Sum_probs=71.2
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
.++|||+|||+++|+++|+++|+.||.|.+|+|+.+. +.++|||||+|.+.++|+.|| .|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-------------------~~~kg~afV~f~~~~~A~~Ai~~l 65 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-------------------NGSKGYGFVHFETQEAAERAIEKM 65 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-------------------TEEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-------------------CCCCceEEEEECCHHHHHHHHHHc
Confidence 4689999999999999999999999999999996643 126799999999999999999 69
Q ss_pred cceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHH
Q 008928 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEE 352 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teed 352 (548)
|+..|.|+.|.|.++.+........ ........+|||+|||+++|++-
T Consensus 66 ~~~~~~g~~i~V~~a~~~~~~~~~~-~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 66 NGMLLNDRKVFVGRFKSRKEREAEL-GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp TTCEETTEECEEEESSCCCC-----------------------------
T ss_pred CCCEECCEEEEEEECCCcccccccc-ccccCCCCceEeCCCCCCccccc
Confidence 9999999999999987643222111 12233456799999999998763
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=2.7e-19 Score=164.14 Aligned_cols=128 Identities=17% Similarity=0.184 Sum_probs=109.5
Q ss_pred CCcceEEEEecCHHHHHHHH-Hh-cceeecCceeEeecCCCccccc-------CCCCCCcCCCccEEEEeCCCCCCCHHH
Q 008928 282 ADSVHAYIVFKSEQSTEAAL-AF-NMAVIGGNHIRLDRACPPRKKL-------KGEDAPLYDIKKTVFVGNLPFDVKDEE 352 (548)
Q Consensus 282 ~skG~AFV~F~s~e~A~~Al-~l-ng~~~~gr~I~V~~a~~~~k~~-------~~~~~~~~~~~~tLfV~NLp~~~teed 352 (548)
..+|+++|+|.+.++|++|+ ++ |+..+.| .|.|+++....... ...........++|||+|||+.+++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 46799999999999999999 68 9999999 99999986532110 011133345679999999999999999
Q ss_pred HHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008928 353 IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 353 L~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
|+++|+.| |.|..|+|+.+ ++|||||+|.+.++|..||..++ ..|.|+.|+|.|+.++
T Consensus 90 l~~~F~~~----G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 90 LERAFGYY----GPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHH----SCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHhh----CCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999 89999999887 58999999999999999999777 9999999999999874
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=143.69 Aligned_cols=82 Identities=26% Similarity=0.440 Sum_probs=77.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
.-..++|||+|||+++|+++|+++|+.| |.|..|.|++|+.+|.++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSI----GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3346789999999999999999999999 999999999999999999999999999999999998877 99999999
Q ss_pred EEEeeec
Q 008928 412 RLSHAQQ 418 (548)
Q Consensus 412 ~V~~Ak~ 418 (548)
+|.||+|
T Consensus 92 ~V~~AkP 98 (99)
T 4fxv_A 92 KVSYARP 98 (99)
T ss_dssp EEEECCB
T ss_pred EEEEeeC
Confidence 9999986
No 25
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.73 E-value=1.2e-17 Score=179.36 Aligned_cols=85 Identities=14% Similarity=0.280 Sum_probs=79.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
..+.++|||+|||+.+|+++|..+|..| |.|..|.|+.+..+|.++|||||+|.+.++|..||..|| ..|.|+.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVY----GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEE
Confidence 3456899999999999999999999999 999999999999999999999999999999999998888 99999999
Q ss_pred EEEeeecCCC
Q 008928 412 RLSHAQQNCT 421 (548)
Q Consensus 412 ~V~~Ak~~~~ 421 (548)
.|.|+.+...
T Consensus 175 ~V~~a~~~~~ 184 (437)
T 3pgw_S 175 LVDVERGRTV 184 (437)
T ss_pred EEEEeCCCCC
Confidence 9999987643
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=140.84 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=75.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCC-CeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHc-C-CccCCeEEE
Q 008928 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRR-N-LKLRDRELR 412 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G-~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~l-n-~~l~Gr~I~ 412 (548)
+++|||+|||+++|+++|+++|+.| | .|.+|+|++|+.+|.++|||||+|.+.++|..||+.+ + ..|+|+.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~----G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~ 76 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSH----GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVS 76 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHH----TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh----CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEE
Confidence 4689999999999999999999999 7 8999999999999999999999999999999999876 4 679999999
Q ss_pred EEeeecCCC
Q 008928 413 LSHAQQNCT 421 (548)
Q Consensus 413 V~~Ak~~~~ 421 (548)
|.||.++..
T Consensus 77 V~~a~~~~~ 85 (91)
T 2lxi_A 77 MHYSDPKPK 85 (91)
T ss_dssp EECCCSCCC
T ss_pred EEEcCCCCC
Confidence 999987543
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.70 E-value=5e-17 Score=139.39 Aligned_cols=79 Identities=18% Similarity=0.316 Sum_probs=71.7
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
.++|||+|||+++|+++|+++|+.||.|.+|.|+.++. +|.++|||||+|.+.++|..|| .|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----------------tg~~kG~afV~f~~~~~A~~Ai~~l 81 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV-----------------AGHSLGYGFVNYVTAKDAERAINTL 81 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSS-----------------SCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCC-----------------CCcccccEEEEECCHHHHHHHHHHh
Confidence 47899999999999999999999999999999976542 3557899999999999999999 59
Q ss_pred cceeecCceeEeecCCC
Q 008928 304 NMAVIGGNHIRLDRACP 320 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~ 320 (548)
||..|.|+.|.|.++.|
T Consensus 82 ng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 82 NGLRLQSKTIKVSYARP 98 (99)
T ss_dssp TTCEETTEECEEEECCB
T ss_pred CCCEECCEEEEEEEeeC
Confidence 99999999999999864
No 28
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=1.8e-17 Score=150.08 Aligned_cols=126 Identities=19% Similarity=0.245 Sum_probs=82.7
Q ss_pred cceEEEEecCHHHHHHHH-HhcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCC
Q 008928 284 SVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLND 362 (548)
Q Consensus 284 kG~AFV~F~s~e~A~~Al-~lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~ 362 (548)
+-|+|++|.+...+..|| .+++....|+. .+.+..+ .+.....++|||+|||+.+++++|+++|+.|
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~---------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~-- 71 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP---------PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKY-- 71 (135)
T ss_dssp --------------------------------CCSCCS---------CSSGGGCCCEEEECCCSSCHHHHHHHHHGGG--
T ss_pred cccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC---------CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--
Confidence 357889999999999999 47776655543 1222222 2334567899999999999999999999999
Q ss_pred CCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecCCCCC
Q 008928 363 LESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQNCTPS 423 (548)
Q Consensus 363 ~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~~~~~ 423 (548)
|.|..|.|+.+..++.++|||||+|.+.++|..||..|+ ..|.|+.|.|.|+.+...+.
T Consensus 72 --G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 72 --GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp --SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred --CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 899999999998899999999999999999999999877 99999999999998765443
No 29
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.6e-16 Score=148.28 Aligned_cols=129 Identities=12% Similarity=0.178 Sum_probs=79.2
Q ss_pred EEecCHHHHHHHH-Hhcceeec--CceeEeecCCCcccc----c-------CCCCCCcCCCccEEEEeCCCCCCCHHHHH
Q 008928 289 IVFKSEQSTEAAL-AFNMAVIG--GNHIRLDRACPPRKK----L-------KGEDAPLYDIKKTVFVGNLPFDVKDEEIY 354 (548)
Q Consensus 289 V~F~s~e~A~~Al-~lng~~~~--gr~I~V~~a~~~~k~----~-------~~~~~~~~~~~~tLfV~NLp~~~teedL~ 354 (548)
.+|.+.++|..|+ .+++.... |+.+.+.+....... . ...........++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999998 57766554 666666553221100 0 01112234456899999999999999999
Q ss_pred HHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecCCC
Q 008928 355 QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQNCT 421 (548)
Q Consensus 355 ~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~~~ 421 (548)
.+|+.| |.|..|.|+.+..+|.++|||||+|.+.++|..||..|+ ..|.|+.|.|.|+.+...
T Consensus 91 ~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDY----GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGG----SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcC----CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 999999 899999999999999999999999999999999999877 999999999999988643
No 30
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4e-16 Score=132.63 Aligned_cols=85 Identities=14% Similarity=0.330 Sum_probs=78.4
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEE
Q 008928 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDREL 411 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I 411 (548)
.....++|||+|||+.+++++|+++|..| |.|..|.|+.++.++.++|||||+|.+.++|..||.+.+..|.|+.|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l 81 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKF----GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKV 81 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSS----SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEE
Confidence 34567999999999999999999999999 89999999999999999999999999999999999944499999999
Q ss_pred EEEeeecCC
Q 008928 412 RLSHAQQNC 420 (548)
Q Consensus 412 ~V~~Ak~~~ 420 (548)
.|.|+.+..
T Consensus 82 ~V~~a~~~~ 90 (99)
T 2dgs_A 82 EVKRAEPRD 90 (99)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCc
Confidence 999998753
No 31
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=7.7e-16 Score=134.46 Aligned_cols=87 Identities=23% Similarity=0.313 Sum_probs=80.6
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008928 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
.....++|||+|||+.+++++|+++|..| |.|..|.|+.+..++.++|||||+|.+.++|..||..|+ ..|.|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPF----GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34567999999999999999999999999 899999999998899999999999999999999999887 9999999
Q ss_pred EEEEeeecCCCC
Q 008928 411 LRLSHAQQNCTP 422 (548)
Q Consensus 411 I~V~~Ak~~~~~ 422 (548)
|.|.|+.+...+
T Consensus 87 l~V~~a~~~~~~ 98 (115)
T 2dgo_A 87 IRTNWATRKPPA 98 (115)
T ss_dssp CEEEESSCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999999876443
No 32
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=4e-16 Score=137.40 Aligned_cols=84 Identities=18% Similarity=0.353 Sum_probs=78.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
+..++|||+|||+.+++++|+++|+.| |.|..|.|+.+. +|.++|||||+|.+.++|..||..++ ..|.|+.|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 79 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKH----GPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIK 79 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTS----SCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 456899999999999999999999999 899999999997 89999999999999999999999887 999999999
Q ss_pred EEeeecCCCC
Q 008928 413 LSHAQQNCTP 422 (548)
Q Consensus 413 V~~Ak~~~~~ 422 (548)
|.|+.+...+
T Consensus 80 V~~a~~~~~~ 89 (116)
T 2fy1_A 80 VEQAKKPSFQ 89 (116)
T ss_dssp EEECCCSSCS
T ss_pred EEECCCCCCC
Confidence 9999876443
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=137.88 Aligned_cols=82 Identities=21% Similarity=0.247 Sum_probs=77.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
.+.++|||+|||+.+++++|+++|+.| |.|..|.|++|+.++.++|||||+|.+.++|..||..|| ..|.|+.|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~----G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~ 79 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKY----GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIH 79 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhc----CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999999999 999999999999999999999999999999999999887 999999999
Q ss_pred EEeeecC
Q 008928 413 LSHAQQN 419 (548)
Q Consensus 413 V~~Ak~~ 419 (548)
|.++...
T Consensus 80 V~~a~~~ 86 (110)
T 3s8s_A 80 AQLDIKG 86 (110)
T ss_dssp EEECSTT
T ss_pred EEECCCC
Confidence 9998643
No 34
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.7e-16 Score=132.09 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=79.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|..| |.|..|.|+.+..++.++|||||+|.+.++|..||..++ ..|.|+.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAY----GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 80 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3467899999999999999999999999 899999999998899999999999999999999998887 99999999
Q ss_pred EEEeeecCCC
Q 008928 412 RLSHAQQNCT 421 (548)
Q Consensus 412 ~V~~Ak~~~~ 421 (548)
.|.|+.+...
T Consensus 81 ~V~~a~~~~~ 90 (99)
T 1whw_A 81 HVLPSTIKKE 90 (99)
T ss_dssp EEEECCCCST
T ss_pred EEEEcCCCcc
Confidence 9999988643
No 35
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.67 E-value=4.4e-16 Score=167.27 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=72.4
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..++|||+|||+.||+++|..+|+.||.|..|.|+.+.. ++.++|||||+|.+.++|..|| .
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~-----------------tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKR-----------------SGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCC-----------------CCCccceEEEeeccHHHHHHHHHH
Confidence 457999999999999999999999999999999965432 3457899999999999999999 6
Q ss_pred hcceeecCceeEeecCCCc
Q 008928 303 FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~ 321 (548)
|||..|.|+.|.|.++.+.
T Consensus 164 lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 164 ADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred cCCCEECCEEEEEEEeCCC
Confidence 9999999999999998753
No 36
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.7e-16 Score=130.93 Aligned_cols=83 Identities=18% Similarity=0.454 Sum_probs=78.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
+.++|||+|||+.+++++|+++|+.| |.|..|.|+.+..++.++|||||+|.+.++|..||..++ ..|.|+.|+|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPF----GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 56899999999999999999999999 899999999999999999999999999999999999777 9999999999
Q ss_pred EeeecCCC
Q 008928 414 SHAQQNCT 421 (548)
Q Consensus 414 ~~Ak~~~~ 421 (548)
.|+.++..
T Consensus 80 ~~a~~~~~ 87 (95)
T 2dnz_A 80 GHVTERLD 87 (95)
T ss_dssp EESSCCCC
T ss_pred EEcccccC
Confidence 99987543
No 37
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=134.91 Aligned_cols=86 Identities=28% Similarity=0.383 Sum_probs=79.9
Q ss_pred CcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCe
Q 008928 331 PLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDR 409 (548)
Q Consensus 331 ~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr 409 (548)
+.....++|||+|||+.+++++|+++|..| |.|..|.|+.+..++.++|||||+|.+.++|..||..|+ ..|.|+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKY----GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 345567999999999999999999999999 899999999999999999999999999999999999777 999999
Q ss_pred EEEEEeeecCC
Q 008928 410 ELRLSHAQQNC 420 (548)
Q Consensus 410 ~I~V~~Ak~~~ 420 (548)
.|.|.|+.+..
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dnm_A 84 ELRVQVARYGR 94 (103)
T ss_dssp CCEEEECSSCC
T ss_pred EEEEEECCcCC
Confidence 99999998753
No 38
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=4.5e-16 Score=127.62 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=76.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEE
Q 008928 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLS 414 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~ 414 (548)
+.+|||+|||+.+++++|+++|+.| |.|..|.|+.++.+|.++|||||+|.+.++|..|+..++ ..|.|+.|+|.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDF----PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTS----TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 3689999999999999999999999 899999999999999999999999999999999999877 99999999999
Q ss_pred eeecC
Q 008928 415 HAQQN 419 (548)
Q Consensus 415 ~Ak~~ 419 (548)
|+.++
T Consensus 77 ~a~~~ 81 (83)
T 3md1_A 77 WAAKL 81 (83)
T ss_dssp ECCCC
T ss_pred ecCcC
Confidence 99875
No 39
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=129.24 Aligned_cols=82 Identities=23% Similarity=0.343 Sum_probs=75.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
.+.++|||+|||+.+++++|+++|+.| |.|..|.|+.++.++.++|||||+|.+.++|..||..++ ..|.|+.|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPF----GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 356899999999999999999999999 899999999998899999999999999999999999877 999999999
Q ss_pred EEeeecC
Q 008928 413 LSHAQQN 419 (548)
Q Consensus 413 V~~Ak~~ 419 (548)
|.|+.++
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9999864
No 40
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.2e-16 Score=133.14 Aligned_cols=86 Identities=21% Similarity=0.435 Sum_probs=79.9
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008928 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
.....++|||+|||+.+++++|+++|..| |.|..|.|+.++.++.++|||||+|.+.++|..||..|+ ..|.|+.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKY----GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHH----SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567999999999999999999999999 899999999999999999999999999999999998877 9999999
Q ss_pred EEEEeeecCCC
Q 008928 411 LRLSHAQQNCT 421 (548)
Q Consensus 411 I~V~~Ak~~~~ 421 (548)
|+|.|+.+...
T Consensus 84 l~v~~a~~~~~ 94 (102)
T 1x5s_A 84 IRVDQAGKSSD 94 (102)
T ss_dssp CEEEEEECCCC
T ss_pred EEEEECCCCCC
Confidence 99999997643
No 41
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.8e-16 Score=134.19 Aligned_cols=86 Identities=22% Similarity=0.343 Sum_probs=79.7
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008928 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
...+.++|||+|||+.+++++|+++|..| |.|..|.|+.+..++.++|||||+|.+.++|..||..|+ ..|.|+.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTT----SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhcc----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34567999999999999999999999999 899999999999999999999999999999999998877 9999999
Q ss_pred EEEEeeecCCC
Q 008928 411 LRLSHAQQNCT 421 (548)
Q Consensus 411 I~V~~Ak~~~~ 421 (548)
|.|.|+.+...
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 2cqb_A 84 IRVNLAKPMRI 94 (102)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99999987643
No 42
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-16 Score=132.67 Aligned_cols=83 Identities=23% Similarity=0.432 Sum_probs=78.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEE-EEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAV-RVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~V-rI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
+.++|||+|||+.+++++|+++|+.| |.|..| .|+.++.++.++|||||+|.+.++|..||..|+ ..|.|+.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAF----GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT----SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 56899999999999999999999999 899999 999998999999999999999999999999877 999999999
Q ss_pred EEeeecCCC
Q 008928 413 LSHAQQNCT 421 (548)
Q Consensus 413 V~~Ak~~~~ 421 (548)
|.|+.+...
T Consensus 80 v~~a~~~~~ 88 (96)
T 1x5t_A 80 VSYAFKKDS 88 (96)
T ss_dssp EEESCCCCC
T ss_pred EEEecccCC
Confidence 999987643
No 43
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=136.80 Aligned_cols=82 Identities=16% Similarity=0.308 Sum_probs=74.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCC--CeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-C----c
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-L----K 405 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G--~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~----~ 405 (548)
...-.+|||+|||+.+|+++|+++|++| | .|.+|+|++|+.+|.++|||||+|.+.++|..||+.++ . .
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~----G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~ 81 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPY----ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLK 81 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTT----CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhh----CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCce
Confidence 3456799999999999999999999999 6 46799999999999999999999999999999998876 3 5
Q ss_pred cCCeEEEEEeeec
Q 008928 406 LRDRELRLSHAQQ 418 (548)
Q Consensus 406 l~Gr~I~V~~Ak~ 418 (548)
|+|++|.|.||+.
T Consensus 82 i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 82 IDGKTIGVDFAKS 94 (95)
T ss_dssp ETTEEEEEEECCC
T ss_pred ECCEEEEEEEccC
Confidence 8999999999975
No 44
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.4e-16 Score=134.91 Aligned_cols=87 Identities=24% Similarity=0.399 Sum_probs=80.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELR 412 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~ 412 (548)
....++|||+|||+.+++++|+++|..| |.|..|.|+.+..++.++|||||+|.+.++|..||..++..|.|+.|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~ 89 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGF----GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 89 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTT----SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEE
Confidence 4567999999999999999999999999 899999999999999999999999999999999999998889999999
Q ss_pred EEeeecCCCCC
Q 008928 413 LSHAQQNCTPS 423 (548)
Q Consensus 413 V~~Ak~~~~~~ 423 (548)
|.|+.+...+.
T Consensus 90 V~~a~~~~~~~ 100 (116)
T 2cqd_A 90 VNLAYLGAKPR 100 (116)
T ss_dssp EEESTTTCCCC
T ss_pred EEEcccCCCcc
Confidence 99998765443
No 45
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.66 E-value=3e-16 Score=139.28 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=79.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+.+|..| |.|..|.|+.+..++.++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 4457899999999999999999999999 899999999998899999999999999999999998777 99999999
Q ss_pred EEEeeecCCCC
Q 008928 412 RLSHAQQNCTP 422 (548)
Q Consensus 412 ~V~~Ak~~~~~ 422 (548)
.|.|+.+...+
T Consensus 95 ~v~~a~~~~~~ 105 (126)
T 3ex7_B 95 SVDWCFVRGPP 105 (126)
T ss_dssp EEEESEESSSC
T ss_pred EEEEecCCCCC
Confidence 99999986544
No 46
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.7e-16 Score=132.65 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=79.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|+.| |.|..|.|+.++.++.++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPF----GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTT----CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 4567999999999999999999999999 899999999999899999999999999999999999887 99999999
Q ss_pred EEEeeecCC
Q 008928 412 RLSHAQQNC 420 (548)
Q Consensus 412 ~V~~Ak~~~ 420 (548)
.|.|+.+..
T Consensus 88 ~v~~a~~~~ 96 (103)
T 2cq0_A 88 NVEWAKPST 96 (103)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 999998764
No 47
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=8e-16 Score=138.84 Aligned_cols=86 Identities=21% Similarity=0.409 Sum_probs=79.8
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008928 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
.....++|||+|||+.+++++|+++|+.| |.|..|.|+.+..++.++|||||+|.+.++|..||..++ ..|.|+.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERY----GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHH----SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567899999999999999999999999 899999999999999999999999999999999999887 8999999
Q ss_pred EEEEeeecCCC
Q 008928 411 LRLSHAQQNCT 421 (548)
Q Consensus 411 I~V~~Ak~~~~ 421 (548)
|.|.|+.+...
T Consensus 114 l~v~~a~~~~~ 124 (139)
T 1u6f_A 114 LKVALAASGHQ 124 (139)
T ss_dssp EEEEESSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987643
No 48
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.65 E-value=5.5e-16 Score=135.54 Aligned_cols=85 Identities=16% Similarity=0.324 Sum_probs=79.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+++++++|+++|..| |.|..|.|+.+..++.++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPF----GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGG----SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3456899999999999999999999999 899999999999899999999999999999999998877 99999999
Q ss_pred EEEeeecCCC
Q 008928 412 RLSHAQQNCT 421 (548)
Q Consensus 412 ~V~~Ak~~~~ 421 (548)
+|.|+.+...
T Consensus 98 ~V~~a~~~~~ 107 (115)
T 2cpz_A 98 KVQLKRSKND 107 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEEcCCCCc
Confidence 9999987643
No 49
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.5e-16 Score=131.41 Aligned_cols=83 Identities=16% Similarity=0.356 Sum_probs=77.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCC---CCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH---MRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~---tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
+.++|||+|||+.+++++|+++|+.| |.|..|.|+.+.. ++.++|||||+|.+.++|..||..|+ ..|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKV----GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 56899999999999999999999999 8999999999876 66899999999999999999999887 9999999
Q ss_pred EEEEeeecCCC
Q 008928 411 LRLSHAQQNCT 421 (548)
Q Consensus 411 I~V~~Ak~~~~ 421 (548)
|.|.|+.+...
T Consensus 80 l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 LEVRISERATK 90 (98)
T ss_dssp CEEECSSCSSC
T ss_pred EEEEEccCCCC
Confidence 99999987643
No 50
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=1.7e-16 Score=133.75 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=70.5
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcC-CeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG-~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (548)
+++|||+|||+++|+++|+++|+.|| .|.+|+|+.++ .+|.++|||||+|.+.++|..||+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~-----------------~t~~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNK-----------------SSGQSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCS-----------------SSCCCSSEEEEECSSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecC-----------------CCCCcCceEEEEecCHHHHHHHHHh
Confidence 36899999999999999999999999 89999885543 235688999999999999999995
Q ss_pred h-cceeecCceeEeecCCCcc
Q 008928 303 F-NMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 303 l-ng~~~~gr~I~V~~a~~~~ 322 (548)
+ ++..|.|+.|.|.++.+..
T Consensus 64 ~~~~~~~~gr~i~V~~a~~~~ 84 (91)
T 2lxi_A 64 NQHSLNILGQKVSMHYSDPKP 84 (91)
T ss_dssp TTTEEEETTEEEEEECCCSCC
T ss_pred cCCCeEECCEEEEEEEcCCCC
Confidence 5 5778999999999997654
No 51
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=1.1e-16 Score=134.09 Aligned_cols=81 Identities=14% Similarity=0.229 Sum_probs=71.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCC--CeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008928 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G--~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
.+|||+|||+++++++|+++|+.| | .|..|.|+.++.+|.++|||||+|.+.++|..||+.++ ..|.|+.|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~----G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL----GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT----TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh----CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEE
Confidence 579999999999999999999999 8 99999999999999999999999999999999998887 9999999999
Q ss_pred EeeecCCC
Q 008928 414 SHAQQNCT 421 (548)
Q Consensus 414 ~~Ak~~~~ 421 (548)
.++.+...
T Consensus 78 ~~~~~~~~ 85 (90)
T 3p5t_L 78 TPSNKLEH 85 (90)
T ss_dssp CCC-----
T ss_pred EECCCCcc
Confidence 99987643
No 52
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.65 E-value=6.3e-16 Score=128.19 Aligned_cols=80 Identities=20% Similarity=0.426 Sum_probs=75.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELR 412 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~ 412 (548)
....++|||+|||+.+++++|+++|+.| |.|..|.|+.++.+|.++|||||+|.+.++|..||..++..|.|+.|.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~ 83 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKF----GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID 83 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEE
Confidence 4567899999999999999999999999 899999999999999999999999999999999998877889999999
Q ss_pred EEee
Q 008928 413 LSHA 416 (548)
Q Consensus 413 V~~A 416 (548)
|.+|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 53
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.65 E-value=4.7e-16 Score=128.12 Aligned_cols=81 Identities=23% Similarity=0.374 Sum_probs=76.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+.+..++.++|||||+|.+.++|..|+..++ ..|.|+.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 79 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 79 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhcc----CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3467899999999999999999999999 899999999999999999999999999999999998777 99999999
Q ss_pred EEEeee
Q 008928 412 RLSHAQ 417 (548)
Q Consensus 412 ~V~~Ak 417 (548)
+|.||+
T Consensus 80 ~v~~ak 85 (85)
T 3mdf_A 80 RVNLAK 85 (85)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999985
No 54
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.7e-16 Score=132.40 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=78.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|+.| |.|..|.|+.+..+|.++|||||+|.+.++|..||..++ ..|.|+.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc----CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 3457899999999999999999999999 899999999999999999999999999999999999777 99999999
Q ss_pred EEEeeecCC
Q 008928 412 RLSHAQQNC 420 (548)
Q Consensus 412 ~V~~Ak~~~ 420 (548)
.|.|+.+..
T Consensus 96 ~V~~a~~~~ 104 (106)
T 1p27_B 96 SVDWCFVRG 104 (106)
T ss_dssp EEEESEESS
T ss_pred EEEeecCCC
Confidence 999998753
No 55
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.9e-16 Score=132.10 Aligned_cols=84 Identities=24% Similarity=0.370 Sum_probs=79.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|+.| |.|..|.|+.+..++.++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQA----GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 4567899999999999999999999999 899999999998899999999999999999999999888 99999999
Q ss_pred EEEeeecCC
Q 008928 412 RLSHAQQNC 420 (548)
Q Consensus 412 ~V~~Ak~~~ 420 (548)
.|.|+.+..
T Consensus 88 ~v~~a~~~~ 96 (105)
T 1x5u_A 88 RVNKASAHN 96 (105)
T ss_dssp EEEETTTTS
T ss_pred EEEECCCCC
Confidence 999998753
No 56
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=133.72 Aligned_cols=98 Identities=21% Similarity=0.365 Sum_probs=81.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-hc
Q 008928 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~-ln 304 (548)
++|||+|||+++|+++|+++|+.||.|..|.|+.+ ++|||||+|.+.++|..|+. ||
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----------------------PPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----------------------SSSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----------------------CCCEEEEEECCHHHHHHHHHHHC
Confidence 48999999999999999999999999999998432 35899999999999999995 99
Q ss_pred ceeecCceeEeecCCCcccccCCCC-CCcCCCccEEEEeCCC
Q 008928 305 MAVIGGNHIRLDRACPPRKKLKGED-APLYDIKKTVFVGNLP 345 (548)
Q Consensus 305 g~~~~gr~I~V~~a~~~~k~~~~~~-~~~~~~~~tLfV~NLp 345 (548)
+..|.|+.|.|.++.+......... ........+|||+||+
T Consensus 59 g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 59 GKVICGSRVRVELSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp HSCSSSCCCEEEESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCeECCcEEEEEEccCCCCcccCCCCCccccCCCceecCCCC
Confidence 9999999999999987553322221 1222346789999997
No 57
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.7e-16 Score=133.02 Aligned_cols=86 Identities=33% Similarity=0.467 Sum_probs=79.1
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHc-------CC
Q 008928 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRR-------NL 404 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~l-------n~ 404 (548)
.....++|||+|||+.+++++|+++|..| |.|..|.|+.+..++.++|||||+|.+.++|..||..+ +.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQF----GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 34567899999999999999999999999 89999999999999999999999999999999999876 57
Q ss_pred ccCCeEEEEEeeecCCC
Q 008928 405 KLRDRELRLSHAQQNCT 421 (548)
Q Consensus 405 ~l~Gr~I~V~~Ak~~~~ 421 (548)
.|.|+.|.|.|+.+...
T Consensus 87 ~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 87 KLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp ESSSCEEEEECCCCCCC
T ss_pred EEcCEEEEEEECCCCcc
Confidence 89999999999987643
No 58
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.6e-16 Score=132.17 Aligned_cols=86 Identities=24% Similarity=0.410 Sum_probs=79.6
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeec-CCCCCCceEEEEEECCHHHHHHHHHHc-C-CccCC
Q 008928 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRH-PHMRVGKGIAYVLFKTREAANLVIKRR-N-LKLRD 408 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d-~~tg~srG~AFV~F~~~e~A~~Al~~l-n-~~l~G 408 (548)
.....++|||+|||+.+++++|+++|..| |.|..|.|+.+ ..++.++|||||+|.+.++|..||..| + ..|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTF----GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHcc----CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 34567999999999999999999999999 89999999999 789999999999999999999999988 6 99999
Q ss_pred eEEEEEeeecCCC
Q 008928 409 RELRLSHAQQNCT 421 (548)
Q Consensus 409 r~I~V~~Ak~~~~ 421 (548)
+.|.|.|+.+...
T Consensus 87 ~~l~v~~a~~~~~ 99 (107)
T 2cph_A 87 RRLVLEWADSEVT 99 (107)
T ss_dssp CBCEEEECCCCCC
T ss_pred CEEEEEeCCCCCC
Confidence 9999999987643
No 59
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=2.1e-16 Score=138.14 Aligned_cols=101 Identities=18% Similarity=0.273 Sum_probs=88.2
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (548)
..++|||+|||+++++++|..+|+.||.|.+|.|+.+ +.++|||||+|.+.++|..|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--------------------~~~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--------------------PETRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--------------------TTTTTCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--------------------CCCCcEEEEEECCHHHHHHHHHH
Confidence 4589999999999999999999999999999998532 2357999999999999999995
Q ss_pred hcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccC
Q 008928 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLN 361 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g 361 (548)
|||..|.|+.|.|.++.+.... .+++...++++|.++|..||
T Consensus 67 l~g~~~~g~~l~v~~a~~~~~~-----------------~~~~~~~~~~~l~~~~~~~g 108 (115)
T 3lqv_A 67 LSGFNVSNRYLVVLYYNANRAF-----------------QKMDTKKKEEQLKLLKEKYG 108 (115)
T ss_dssp HTTCBSSSCBCEEEECCHHHHT-----------------TTSCHHHHHHHHHHHHHHHC
T ss_pred cCCCEECCeEEEEEEecCChhh-----------------hhhhHhHhHHHHHHHHHHhC
Confidence 9999999999999999754321 56778889999999999994
No 60
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.3e-15 Score=130.58 Aligned_cols=82 Identities=30% Similarity=0.470 Sum_probs=76.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
..+.++|||+|||+.+++++|+++|..| | |..|.|+.+..++.++|||||+|.+.++|..|| .|+ ..|.|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDL----S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTS----C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC----C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 4567999999999999999999999999 7 999999999999999999999999999999999 666 99999999
Q ss_pred EEEeeecCC
Q 008928 412 RLSHAQQNC 420 (548)
Q Consensus 412 ~V~~Ak~~~ 420 (548)
.|.|+.+..
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dng_A 86 RVDIAEGRK 94 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999998753
No 61
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8e-16 Score=131.82 Aligned_cols=83 Identities=25% Similarity=0.378 Sum_probs=77.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhc-cCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-Cc-cCCe
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCG-LNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LK-LRDR 409 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~-~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~-l~Gr 409 (548)
..+.++|||+|||+.+++++|+++|.. | |.|..|.|+.+. +|.++|||||+|.+.++|..||..++ .. |.|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~----G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVY----PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHC----TTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhC----CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 456789999999999999999999999 9 899999999998 99999999999999999999999888 77 9999
Q ss_pred EEEEEeeecCC
Q 008928 410 ELRLSHAQQNC 420 (548)
Q Consensus 410 ~I~V~~Ak~~~ 420 (548)
.|.|.|+.+..
T Consensus 81 ~l~v~~a~~~~ 91 (104)
T 2dhg_A 81 PVRLSVAIPKA 91 (104)
T ss_dssp CCCCCBCCCCC
T ss_pred eEEEEEccCCC
Confidence 99999998754
No 62
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=128.76 Aligned_cols=82 Identities=21% Similarity=0.357 Sum_probs=77.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
..+.++|||+|||+.+++++|+++|..| |.|..|.|+.++.++.++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKY----GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTT----SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4567899999999999999999999999 899999999999999999999999999999999999877 99999999
Q ss_pred EEEeeec
Q 008928 412 RLSHAQQ 418 (548)
Q Consensus 412 ~V~~Ak~ 418 (548)
.|.|+.+
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999874
No 63
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=130.31 Aligned_cols=83 Identities=20% Similarity=0.297 Sum_probs=77.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|..| |.|..|.|+.+ ++.++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPF----GTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTT----SCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 4467899999999999999999999999 89999999998 89999999999999999999999877 99999999
Q ss_pred EEEeeecCCC
Q 008928 412 RLSHAQQNCT 421 (548)
Q Consensus 412 ~V~~Ak~~~~ 421 (548)
.|.|+.+...
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2d9p_A 86 YVALAQRKEE 95 (103)
T ss_dssp EEEECSSCCC
T ss_pred EEEEeccccc
Confidence 9999987643
No 64
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=129.34 Aligned_cols=83 Identities=18% Similarity=0.398 Sum_probs=77.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|..| |.|..|.|+.+. +|.++|||||+|.+.++|..||..++ ..|.|+.|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 88 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAH----GTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENII 88 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4457899999999999999999999999 899999999997 89999999999999999999998877 99999999
Q ss_pred EEEeeecCC
Q 008928 412 RLSHAQQNC 420 (548)
Q Consensus 412 ~V~~Ak~~~ 420 (548)
.|.|+.+..
T Consensus 89 ~v~~a~~~~ 97 (100)
T 2do4_A 89 KVAISNSGP 97 (100)
T ss_dssp EEEECCCCS
T ss_pred EEEECCCCC
Confidence 999998753
No 65
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.63 E-value=8.3e-16 Score=130.06 Aligned_cols=81 Identities=22% Similarity=0.476 Sum_probs=76.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
+.++|||+|||+.+++++|+++|+.| |.|..|.|+.+..+|.++|||||+|.+.++|..|+..++ ..|.|+.|.|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 76 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNV----GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKC 76 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 35799999999999999999999999 899999999999999999999999999999999998777 9999999999
Q ss_pred EeeecC
Q 008928 414 SHAQQN 419 (548)
Q Consensus 414 ~~Ak~~ 419 (548)
.|+.+.
T Consensus 77 ~~a~~~ 82 (96)
T 2x1f_A 77 GYSSNS 82 (96)
T ss_dssp EECSCS
T ss_pred EEcCCC
Confidence 999875
No 66
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.63 E-value=8.9e-16 Score=133.61 Aligned_cols=84 Identities=18% Similarity=0.345 Sum_probs=77.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELR 412 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~ 412 (548)
....++|||+|||+.+++++|+++|+.| |.|..|.|+.+..+|.++|||||+|.+.++|..||..++..|.|+.|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~ 97 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQF----GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTID 97 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcc----CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEE
Confidence 3457899999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred EEeeecCC
Q 008928 413 LSHAQQNC 420 (548)
Q Consensus 413 V~~Ak~~~ 420 (548)
|.++.+..
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99998754
No 67
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=128.62 Aligned_cols=81 Identities=30% Similarity=0.539 Sum_probs=76.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
..+.++|||+|||+.+++++|+++|..| |.|..|.|+.++.++.++|||||+|.+.++|..||..++ ..|.|+.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKY----GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTT----SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 4567899999999999999999999999 899999999999999999999999999999999998887 99999999
Q ss_pred EEEeee
Q 008928 412 RLSHAQ 417 (548)
Q Consensus 412 ~V~~Ak 417 (548)
+|.||+
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999985
No 68
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.3e-15 Score=128.85 Aligned_cols=85 Identities=16% Similarity=0.253 Sum_probs=78.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELR 412 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~ 412 (548)
....++|||+|||+.+++++|+++|..| |.|..|.|+.++.++.++|||||+|.+.++|..||.. +..|.|+.|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~ 86 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTF----GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCD 86 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhc----CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEE
Confidence 4467899999999999999999999999 8999999999999999999999999999999999984 5789999999
Q ss_pred EEeeecCCCC
Q 008928 413 LSHAQQNCTP 422 (548)
Q Consensus 413 V~~Ak~~~~~ 422 (548)
|.|+.+...+
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999886443
No 69
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=1.1e-15 Score=126.62 Aligned_cols=80 Identities=29% Similarity=0.397 Sum_probs=71.2
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
+...++|||+|||+++++++|.++|+.||.|..|.|+.++. +|.++|||||+|.+.++|..||
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~ 70 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN-----------------TGRSRGFGFILFKDAASVEKVL 70 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-----------------TCCEEEEEEEEESSTHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC-----------------CCccccEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999999999966542 3457899999999999999999
Q ss_pred HhcceeecCceeEeecC
Q 008928 302 AFNMAVIGGNHIRLDRA 318 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a 318 (548)
.+++..|.|+.|.|.++
T Consensus 71 ~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 71 DQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp HSSCEEETTEEEEEEEC
T ss_pred HhCCCEECCEEEEEEeC
Confidence 98999999999999875
No 70
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=130.50 Aligned_cols=82 Identities=33% Similarity=0.515 Sum_probs=76.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCC-CCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM-RVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~t-g~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
..+.++|||+|||+.+++++|+++|..| | |..|.|+.+..+ +.++|||||+|.+.++|..|| .++ ..|.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGL----N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTS----C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHC----C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 3457999999999999999999999999 9 999999999887 999999999999999999999 666 9999999
Q ss_pred EEEEeeecCC
Q 008928 411 LRLSHAQQNC 420 (548)
Q Consensus 411 I~V~~Ak~~~ 420 (548)
|.|.|+.+..
T Consensus 86 l~V~~a~~~~ 95 (104)
T 1wi8_A 86 IRVDVADQAQ 95 (104)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCCC
Confidence 9999998753
No 71
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=133.63 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=72.6
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..++|||+|||+++++++|.++|+.||.|.+|.|+.++. ++.++|||||+|.+.++|..|| .
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~-----------------tg~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPR-----------------TRKHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCC-----------------CCceeeEEEEEECCHHHHHHHHHH
Confidence 458999999999999999999999999999999976552 3558899999999999999999 5
Q ss_pred hcceeecCceeEeecCCC
Q 008928 303 FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~ 320 (548)
|||..|.|+.|.|.++..
T Consensus 68 lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 68 LHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp HTTCEETTEECEEEECST
T ss_pred hCCCEECCeEEEEEECCC
Confidence 999999999999999864
No 72
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.5e-16 Score=133.57 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=71.7
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++|+++|.++|+.||.|.+|+|+.++ .|.++|||||+|.+.++|..||.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~------------------~g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL------------------HKAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCC------------------TTSCCCEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECC------------------CCCCccEEEEEECCHHHHHHHHH
Confidence 345899999999999999999999999999999996644 14578999999999999999999
Q ss_pred hcceeecCceeEeecCCC
Q 008928 303 FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~ 320 (548)
+++..|.|+.|.|.++..
T Consensus 71 ~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 71 TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp SSCCCCTTTTCEEEEHHH
T ss_pred cCCCEECCEEEEEEEchH
Confidence 999999999999998653
No 73
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.2e-15 Score=128.07 Aligned_cols=83 Identities=27% Similarity=0.404 Sum_probs=74.0
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++++++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..||.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE-----------------KQRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTT-----------------TCSCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-----------------CCCCCceEEEEECCHHHHHHHHH
Confidence 4568999999999999999999999999999999965431 34578999999999999999999
Q ss_pred hcceeecCceeEeecCCCcc
Q 008928 303 FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~ 322 (548)
||+..|.|+.|.|.++.+..
T Consensus 71 ~~~~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 71 MHFHDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp HCCCBSSSCBCEEEECCCCC
T ss_pred hCCCEECCeEEEEEECCCCc
Confidence 99999999999999998654
No 74
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.62 E-value=1.4e-15 Score=131.72 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=78.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+.+|+.| |.|..|.|+.+..+|.++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDY----GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 4467899999999999999999999999 899999999999999999999999999999999999777 99999999
Q ss_pred EEEeeecCC
Q 008928 412 RLSHAQQNC 420 (548)
Q Consensus 412 ~V~~Ak~~~ 420 (548)
.|.|+.+..
T Consensus 99 ~V~~a~~~~ 107 (110)
T 1oo0_B 99 QVDWCFVKG 107 (110)
T ss_dssp EEEESEESS
T ss_pred EEEEcccCC
Confidence 999998753
No 75
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.62 E-value=1.6e-15 Score=130.34 Aligned_cols=84 Identities=18% Similarity=0.338 Sum_probs=77.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-Ccc---CC
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKL---RD 408 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l---~G 408 (548)
....++|||+|||+.+++++|+++|+.| |.|..|.|+.++.++.++|||||+|.+.++|..||..|+ ..+ .|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEF----GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHH----SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 4467899999999999999999999999 899999999999999999999999999999999999887 666 88
Q ss_pred eEEEEEeeecCC
Q 008928 409 RELRLSHAQQNC 420 (548)
Q Consensus 409 r~I~V~~Ak~~~ 420 (548)
+.|.|.|+.+..
T Consensus 86 ~~l~v~~a~~~~ 97 (106)
T 2dgp_A 86 RPIQVKPADSES 97 (106)
T ss_dssp SCCEEEECCCCS
T ss_pred ceEEEEECCccc
Confidence 999999998753
No 76
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.62 E-value=2.3e-15 Score=138.78 Aligned_cols=83 Identities=24% Similarity=0.386 Sum_probs=78.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|+.| |.|..|.|+.+..++.++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 111 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKS----GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRII 111 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3467899999999999999999999999 899999999999999999999999999999999999887 99999999
Q ss_pred EEEeeecC
Q 008928 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|.|+.+.
T Consensus 112 ~V~~a~~~ 119 (156)
T 1h2v_Z 112 RTDWDAGF 119 (156)
T ss_dssp EEEEESCC
T ss_pred EEEECCCC
Confidence 99999875
No 77
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=129.72 Aligned_cols=84 Identities=18% Similarity=0.302 Sum_probs=78.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeE-EEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE-AVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~-~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
....++|||+|||+.+++++|+++|..| |.|. .|.|+.++.++.++|||||+|.+.++|..||..|+ ..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATM----GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHT----TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHh----CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 4467999999999999999999999999 8999 99999999999999999999999999999999887 9999999
Q ss_pred ----EEEEeeecCC
Q 008928 411 ----LRLSHAQQNC 420 (548)
Q Consensus 411 ----I~V~~Ak~~~ 420 (548)
|+|.||.+..
T Consensus 82 ~~~~l~v~~a~~~~ 95 (99)
T 2div_A 82 PAKRFKLNYATYSG 95 (99)
T ss_dssp SCEECCEEETTCCS
T ss_pred cceeEEEeecCCCC
Confidence 9999998753
No 78
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.62 E-value=2.5e-15 Score=128.92 Aligned_cols=84 Identities=23% Similarity=0.345 Sum_probs=77.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCC---
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRD--- 408 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~G--- 408 (548)
....++|||+|||+.+++++|+++|+.| |.|..|.|+.+. +|.++|||||+|.+.++|..||..|+ ..|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~ 86 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPF----GVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 86 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCC
Confidence 3457999999999999999999999999 899999999997 79999999999999999999999887 77887
Q ss_pred eEEEEEeeecCCC
Q 008928 409 RELRLSHAQQNCT 421 (548)
Q Consensus 409 r~I~V~~Ak~~~~ 421 (548)
+.|.|.|+.+...
T Consensus 87 ~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 87 SSLVVKFADTDKE 99 (105)
T ss_dssp SCCEEEESCSSCC
T ss_pred ccEEEEECccCcc
Confidence 9999999987643
No 79
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.62 E-value=3.3e-16 Score=134.15 Aligned_cols=81 Identities=19% Similarity=0.184 Sum_probs=76.5
Q ss_pred CccEEEEeCCCC------CCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccC
Q 008928 335 IKKTVFVGNLPF------DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLR 407 (548)
Q Consensus 335 ~~~tLfV~NLp~------~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~ 407 (548)
..++|||+|||+ .+++++|+++|+.| |.|..|.|++++.||.++|||||+|.+.++|..||..|+ ..|.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~----G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA----GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc----CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 368999999999 99999999999999 999999999999999999999999999999999998877 9999
Q ss_pred C-eEEEEEeeecC
Q 008928 408 D-RELRLSHAQQN 419 (548)
Q Consensus 408 G-r~I~V~~Ak~~ 419 (548)
| +.|.|.++.+.
T Consensus 81 g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 81 LKHRLFLYTMKDV 93 (100)
T ss_dssp SSCBCEEEESHHH
T ss_pred CCeEEEEEECchh
Confidence 9 99999999763
No 80
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=131.24 Aligned_cols=85 Identities=19% Similarity=0.325 Sum_probs=78.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELR 412 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~ 412 (548)
....++|||+|||+.+++++|+++|..| |.|..|.|+.++.++.++|||||+|.+.++|..||...+..|.|+.|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~ 88 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQY----GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNID 88 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTT----SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEE
Confidence 4567999999999999999999999999 899999999999999999999999999999999999844999999999
Q ss_pred EEeeecCCC
Q 008928 413 LSHAQQNCT 421 (548)
Q Consensus 413 V~~Ak~~~~ 421 (548)
|.|+.+...
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 999987643
No 81
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.62 E-value=2e-15 Score=123.78 Aligned_cols=79 Identities=20% Similarity=0.301 Sum_probs=71.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-hc
Q 008928 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~-ln 304 (548)
.+|||+|||+++++++|.++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..|+. ||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ-----------------TGSSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT-----------------TCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC-----------------CCCccceEEEEECCHHHHHHHHHHhc
Confidence 5899999999999999999999999999999966442 34578999999999999999995 99
Q ss_pred ceeecCceeEeecCCCc
Q 008928 305 MAVIGGNHIRLDRACPP 321 (548)
Q Consensus 305 g~~~~gr~I~V~~a~~~ 321 (548)
|..|.|+.|.|.++.+.
T Consensus 65 g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 65 GQDLNGRPLRINWAAKL 81 (83)
T ss_dssp TCEETTEECEEEECCCC
T ss_pred CCeeCCcEEEEEecCcC
Confidence 99999999999998753
No 82
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=128.97 Aligned_cols=82 Identities=20% Similarity=0.222 Sum_probs=76.7
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEE--------EEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC
Q 008928 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA--------VRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN 403 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~--------VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln 403 (548)
...+.++|||+|||+++++++|+++|+.| |.|.. |.|+.++.+|.++|||||+|.+.++|..||..|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTT----SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34567999999999999999999999999 89999 9999999999999999999999999999998777
Q ss_pred -CccCCeEEEEEeee
Q 008928 404 -LKLRDRELRLSHAQ 417 (548)
Q Consensus 404 -~~l~Gr~I~V~~Ak 417 (548)
..|.|+.|+|.||+
T Consensus 85 g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 85 GKEFSGNPIKVSFAT 99 (99)
T ss_dssp TCBSSSSBCEEEECC
T ss_pred CCEeCCcEEEEEecC
Confidence 99999999999984
No 83
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=132.17 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=78.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeE--------EEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--------AVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN- 403 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~--------~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln- 403 (548)
....++|||+|||+.+++++|+++|..| |.|. .|.|+.++.++.++|||||+|.+.++|..||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQC----GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTT----SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc----CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 4467899999999999999999999999 8998 69999999999999999999999999999999877
Q ss_pred CccCCeEEEEEeeecCC
Q 008928 404 LKLRDRELRLSHAQQNC 420 (548)
Q Consensus 404 ~~l~Gr~I~V~~Ak~~~ 420 (548)
..|.|+.|+|.|+.+..
T Consensus 88 ~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKP 104 (113)
T ss_dssp CEETTEECEEECSSCCC
T ss_pred CccCCCEEEEEECCCCC
Confidence 99999999999998754
No 84
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.61 E-value=1.8e-15 Score=132.81 Aligned_cols=78 Identities=24% Similarity=0.480 Sum_probs=72.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEE
Q 008928 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLS 414 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~ 414 (548)
..+|||+|||+++++++|+++|+.| |.|.+|+|+++. +.++|||||+|.+.++|..||..|+ ..|.|+.|.|.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~----G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~ 78 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 78 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhcc----CCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4689999999999999999999999 999999999985 4579999999999999999998877 99999999999
Q ss_pred eeecC
Q 008928 415 HAQQN 419 (548)
Q Consensus 415 ~Ak~~ 419 (548)
++.+.
T Consensus 79 ~a~~~ 83 (115)
T 4f25_A 79 RFKSR 83 (115)
T ss_dssp ESSCC
T ss_pred ECCCc
Confidence 99864
No 85
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.4e-15 Score=127.10 Aligned_cols=82 Identities=23% Similarity=0.358 Sum_probs=74.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|+.| |.|..|.|+.+..+ ++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQI----GPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHH----SCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhc----CCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 4567999999999999999999999999 89999999998543 68999999999999999999777 89999999
Q ss_pred EEEeeecCC
Q 008928 412 RLSHAQQNC 420 (548)
Q Consensus 412 ~V~~Ak~~~ 420 (548)
.|.|+.+..
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2cqi_A 86 KVNWATTPS 94 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCCc
Confidence 999998754
No 86
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=133.11 Aligned_cols=83 Identities=23% Similarity=0.328 Sum_probs=73.7
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..++|||+|||+++++++|.++|+.||.|..|.|+.+. +|.++|||||+|.+.++|+.|| .
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR------------------TSKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST------------------TTTCCCEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC------------------CCCcccEEEEEECCHHHHHHHHHH
Confidence 45899999999999999999999999999999996543 3457799999999999999999 5
Q ss_pred hcceeecCceeEeecCCCcccc
Q 008928 303 FNMAVIGGNHIRLDRACPPRKK 324 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~k~ 324 (548)
||+..|.|+.|.|.++.++...
T Consensus 68 l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 68 MNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp CSSCBCSSSBCEEEECCCSSCS
T ss_pred hCCCEECCEEEEEEECCCCCCC
Confidence 9999999999999999866443
No 87
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.6e-15 Score=126.45 Aligned_cols=84 Identities=20% Similarity=0.396 Sum_probs=76.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|..| |.|..|.|+.+.. .++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQF----GKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGT----SCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4567999999999999999999999999 8999999999854 389999999999999999999877 99999999
Q ss_pred EEEeeecCCCC
Q 008928 412 RLSHAQQNCTP 422 (548)
Q Consensus 412 ~V~~Ak~~~~~ 422 (548)
.|.|+.+....
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cq3_A 86 EVNNATARVMT 96 (103)
T ss_dssp EEEECCSSCCC
T ss_pred EEEEcccCCCC
Confidence 99999886443
No 88
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=6.6e-15 Score=128.18 Aligned_cols=82 Identities=23% Similarity=0.276 Sum_probs=76.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|..| |.|..|.|+.+. ++.++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMA----GVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 4457899999999999999999999999 899999999996 69999999999999999999999777 99999999
Q ss_pred EEEeeecC
Q 008928 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|.|+...
T Consensus 87 ~v~~a~~~ 94 (114)
T 2do0_A 87 HVKMDERA 94 (114)
T ss_dssp EEEECSCC
T ss_pred EEEEcccC
Confidence 99999754
No 89
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.61 E-value=2.2e-15 Score=125.07 Aligned_cols=79 Identities=24% Similarity=0.462 Sum_probs=74.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEE
Q 008928 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLS 414 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~ 414 (548)
.++|||+|||+.+++++|+++|+.| |.|..|.|+.+..++.++|||||+|.+.++|..|+ .++ ..|.|+.|.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC----GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG----CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEE
Confidence 5799999999999999999999999 89999999999989999999999999999999999 666 99999999999
Q ss_pred eeecC
Q 008928 415 HAQQN 419 (548)
Q Consensus 415 ~Ak~~ 419 (548)
++.+.
T Consensus 81 ~a~~~ 85 (89)
T 3ucg_A 81 PKRTN 85 (89)
T ss_dssp ETTTT
T ss_pred EccCC
Confidence 99764
No 90
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3e-15 Score=127.46 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=73.2
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++|+++|.++|+.||.|..|.|+.+. ++.++|||||+|.+.++|..||
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~ 75 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR------------------AGKPKGLAYVEYENESQASQAV 75 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT------------------TSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC------------------CCCEEeEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999999999996643 2447799999999999999999
Q ss_pred -HhcceeecCceeEeecCCCc
Q 008928 302 -AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 -~lng~~~~gr~I~V~~a~~~ 321 (548)
.||+..|.|+.|.|.++.++
T Consensus 76 ~~l~g~~~~g~~l~v~~a~~~ 96 (100)
T 2do4_A 76 MKMDGMTIKENIIKVAISNSG 96 (100)
T ss_dssp HHHTTEESSSCEEEEEECCCC
T ss_pred HHhCCCEECCEEEEEEECCCC
Confidence 69999999999999999764
No 91
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.2e-15 Score=126.89 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=73.6
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...++|||+|||+++++++|+++|+.||.|..|.|+.+. .++.++|||||+|.+.++|..||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~A~~ 68 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS-----------------LTKKPKGFAFVTFMFPEHAVKAYA 68 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCT-----------------TTCCCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC-----------------CCCCcCeEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999985433 13457899999999999999999
Q ss_pred HhcceeecCceeEeecCCCcc
Q 008928 302 AFNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~~ 322 (548)
.||+..|.|+.|.|.++.+..
T Consensus 69 ~l~g~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 69 EVDGQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp HTTTEESSSCEEEEEECCCCS
T ss_pred HhCCCEECCcEEEEEEcCCCc
Confidence 799999999999999998654
No 92
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=5.1e-15 Score=128.24 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=71.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCC---
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRD--- 408 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~G--- 408 (548)
....++|||+|||+++++++|+++|..| |.|..|.|+.+ |||||+|.+.++|..||..|+ ..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 4557899999999999999999999999 89999999877 799999999999999999888 88999
Q ss_pred --eEEEEEeeecCC
Q 008928 409 --RELRLSHAQQNC 420 (548)
Q Consensus 409 --r~I~V~~Ak~~~ 420 (548)
+.|.|.++.++.
T Consensus 81 ~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 81 ETAYIRVKVDGPRS 94 (108)
T ss_dssp CEEEEEEEESSCCS
T ss_pred cceEEEEEeCCCCC
Confidence 999999998854
No 93
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.8e-15 Score=128.33 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=74.2
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++++++|.++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~A~ 74 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT-----------------TGQSKGFAFISFHRREDAARAI 74 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSS-----------------SCSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCC-----------------CCceeeEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999999999966432 3457799999999999999999
Q ss_pred H-hcceeecCceeEeecCCCcc
Q 008928 302 A-FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~-lng~~~~gr~I~V~~a~~~~ 322 (548)
. ||+..|.|+.|.|.++.+..
T Consensus 75 ~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 75 AGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp HHTTTCEETTEECEEEESSCCC
T ss_pred HHcCCCeeCCcEEEEEECCCCC
Confidence 5 99999999999999997653
No 94
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.1e-15 Score=132.00 Aligned_cols=83 Identities=17% Similarity=0.375 Sum_probs=77.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRL 413 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V 413 (548)
...++|||+|||+.+++++|+++|..| |.|..|.|+.++.++.++|||||+|.+.++|..||...+..|.|+.|.|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V 100 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQW----GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEP 100 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSS----CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEE
Confidence 346899999999999999999999999 8999999999999999999999999999999999988449999999999
Q ss_pred EeeecCC
Q 008928 414 SHAQQNC 420 (548)
Q Consensus 414 ~~Ak~~~ 420 (548)
.|+.+..
T Consensus 101 ~~a~~~~ 107 (116)
T 1x4b_A 101 KRAVARE 107 (116)
T ss_dssp ECCSSCC
T ss_pred EECCCCc
Confidence 9998764
No 95
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.61 E-value=2.1e-15 Score=125.26 Aligned_cols=81 Identities=23% Similarity=0.357 Sum_probs=72.5
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHh
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (548)
..++|||+|||+++++++|.++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..|+.|
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~a~~~ 67 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKF-----------------SGHPKGFAYIEFSDKESVRTSLAL 67 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCS-----------------SSSCCEEEEEEESSTHHHHHHGGG
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC-----------------CCCcceEEEEEECCHHHHHHHHhc
Confidence 358999999999999999999999999999999965431 345789999999999999999999
Q ss_pred cceeecCceeEeecCCCc
Q 008928 304 NMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~ 321 (548)
|+..|.|+.|.|.++.++
T Consensus 68 ~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 68 DESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TTCEETTEECEEEETTTT
T ss_pred CCCEECCcEEEEEEccCC
Confidence 999999999999998653
No 96
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=124.73 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=70.7
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (548)
..++|||+|||+++++++|+++|+.||.|.+|.|+.++. ++.++|||||+|.+.++|..|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMA-----------------TGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC-----------------CCccceEEEEEECCHHHHHHHHHH
Confidence 357999999999999999999999999999999966431 34578999999999999999995
Q ss_pred hcceeecCceeEeecCCC
Q 008928 303 FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~ 320 (548)
||+..|.|+.|.|.++.+
T Consensus 68 l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 68 MGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp HTTCEETTEECEEEEEC-
T ss_pred cCCCEECCeEEEEEecCC
Confidence 999999999999999864
No 97
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=130.56 Aligned_cols=83 Identities=18% Similarity=0.445 Sum_probs=78.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|+.| |.|..|.|+.++.+|.++|||||+|.+.++|..||..++ ..|.|+.|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTT----SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4567899999999999999999999999 899999999999999999999999999999999998777 99999999
Q ss_pred EEEeeecC
Q 008928 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|.|+.++
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99999875
No 98
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=140.16 Aligned_cols=81 Identities=15% Similarity=0.271 Sum_probs=76.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCC--CeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G--~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
..++|||+|||+++++++|+++|+.| | .|..|.|+.|+.+|.++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~----G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSI----GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHT----TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH----CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEe
Confidence 45899999999999999999999999 8 99999999999999999999999999999999999988 99999999
Q ss_pred EEEeeecC
Q 008928 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|.+|.+.
T Consensus 130 ~V~~a~~~ 137 (156)
T 3n9u_C 130 DVRPATRQ 137 (156)
T ss_dssp EEEECCHH
T ss_pred EEEEcCCC
Confidence 99999764
No 99
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.3e-15 Score=126.60 Aligned_cols=82 Identities=24% Similarity=0.409 Sum_probs=72.6
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+.+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-------------------~~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH-------------------TSNDPYCFVEFYEHRDAAAAL 72 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC-------------------CSSCCEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC-------------------CCCCCEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999999999996542 125699999999999999999
Q ss_pred H-hcceeecCceeEeecCCCcc
Q 008928 302 A-FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~-lng~~~~gr~I~V~~a~~~~ 322 (548)
. ||+..|.|+.|.|.++.++.
T Consensus 73 ~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 73 AAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp HHHTTEEETTEEEEEEECCCTT
T ss_pred HHhCCCCcCCCeEEEEECCCCc
Confidence 5 99999999999999998654
No 100
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=124.52 Aligned_cols=81 Identities=19% Similarity=0.317 Sum_probs=75.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCC-CceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV-GKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~-srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
..++|||+|||+++++++|+++|+.| |.|..|.|+.+..++. ++|||||+|.+.++|..|+..++ ..|.|+.|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTY----GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEE
Confidence 35789999999999999999999999 8999999999987766 89999999999999999999777 999999999
Q ss_pred EEeeecC
Q 008928 413 LSHAQQN 419 (548)
Q Consensus 413 V~~Ak~~ 419 (548)
|.++.+.
T Consensus 79 v~~a~~~ 85 (88)
T 4a8x_A 79 ATAVLAP 85 (88)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9999764
No 101
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4e-15 Score=125.08 Aligned_cols=82 Identities=21% Similarity=0.223 Sum_probs=72.6
Q ss_pred CCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 221 ~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~A 73 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ-----------------SRRSRGFAFVYFENVDDAKEA 73 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSS-----------------SSSEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC-----------------CCCcccEEEEEECCHHHHHHH
Confidence 344568999999999999999999999999999999966542 244779999999999999999
Q ss_pred HH-hcceeecCceeEeecCC
Q 008928 301 LA-FNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 301 l~-lng~~~~gr~I~V~~a~ 319 (548)
|. ||+..|.|+.|.|.++.
T Consensus 74 ~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 74 KERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp HHHHTTEEETTEEEEEECCS
T ss_pred HHHhCCCEECCEEEEEEecC
Confidence 95 99999999999999985
No 102
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=130.00 Aligned_cols=80 Identities=15% Similarity=0.275 Sum_probs=68.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCC--eeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGE--IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~--I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
.-.||||+|||+.+|+++|+++|++||. |.+|+|+.++ .+|.++|||||+|.+.++|+.||
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~-----------------~tg~srG~aFV~f~~~~~A~~Ai 70 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDK-----------------QTQQNRGFAFVQLSSAMDASQLL 70 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCS-----------------SSSSCSSEEEEECSSSHHHHHHH
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecC-----------------CCCCCceEeEEEECCHHHHHHHH
Confidence 4579999999999999999999999995 5688885544 24568899999999999999999
Q ss_pred -Hhcce----eecCceeEeecCCC
Q 008928 302 -AFNMA----VIGGNHIRLDRACP 320 (548)
Q Consensus 302 -~lng~----~~~gr~I~V~~a~~ 320 (548)
.||+. .|.|+.|.|.++..
T Consensus 71 ~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 71 QILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HHHHSSSSCEEETTEEEEEEECCC
T ss_pred HHhcCCCCCceECCEEEEEEEccC
Confidence 58876 58999999999853
No 103
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.5e-15 Score=128.00 Aligned_cols=85 Identities=22% Similarity=0.362 Sum_probs=74.4
Q ss_pred CCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 221 ~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
+....++|||+|||+++++++|.++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A 73 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRV-----------------TGQHQGYGFVEFLSEEDADYA 73 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSS-----------------SCSBCSCEEEEESSHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCcCCcEEEEEECCHHHHHHH
Confidence 344568999999999999999999999999999999855431 345789999999999999999
Q ss_pred HH-hcceeecCceeEeecCCCcc
Q 008928 301 LA-FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 301 l~-lng~~~~gr~I~V~~a~~~~ 322 (548)
|. ||+..|.|+.|.|.++.+..
T Consensus 74 ~~~l~g~~~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 74 IKIMDMIKLYGKPIRVNKASAHN 96 (105)
T ss_dssp HHHSSSCBCSSCBCEEEETTTTS
T ss_pred HHHhCCCeECCeEEEEEECCCCC
Confidence 95 89999999999999997654
No 104
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.3e-15 Score=125.98 Aligned_cols=82 Identities=17% Similarity=0.197 Sum_probs=74.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHH----HHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccC
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIY----QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLR 407 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~----~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~ 407 (548)
.....+|||+|||+.+++++|+ ++|+.| |.|..|.|+.+..+ +|||||+|.+.++|..||..++ ..|.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~----G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARH----GKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhcccc----CcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4456899999999999999999 999999 89999999999765 8899999999999999999887 9999
Q ss_pred CeEEEEEeeecCCC
Q 008928 408 DRELRLSHAQQNCT 421 (548)
Q Consensus 408 Gr~I~V~~Ak~~~~ 421 (548)
|+.|+|.||.+...
T Consensus 79 gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 79 SKKILVSLATGASG 92 (96)
T ss_dssp TEEEEEEECCCSSC
T ss_pred CeEEEEEEcCCCCC
Confidence 99999999987643
No 105
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.60 E-value=1.1e-15 Score=130.96 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=72.7
Q ss_pred CcccEEEEcCCCC------CCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHH
Q 008928 223 KLLRTIFVGNLPL------KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQS 296 (548)
Q Consensus 223 ~~~rtVfVgNLP~------~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~ 296 (548)
...++|||+|||+ ++++++|.++|+.||.|.+|.|+.++. +|.++|||||+|.+.++
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~-----------------tg~~kG~afV~f~~~~~ 66 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEA-----------------TGKTKGFLFVECGSMND 66 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETT-----------------TTEECSEEEEEESSHHH
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCC-----------------CCccceEEEEEECCHHH
Confidence 3468999999999 999999999999999999999966542 34578999999999999
Q ss_pred HHHHH-HhcceeecC-ceeEeecCCC
Q 008928 297 TEAAL-AFNMAVIGG-NHIRLDRACP 320 (548)
Q Consensus 297 A~~Al-~lng~~~~g-r~I~V~~a~~ 320 (548)
|..|| .|||..|.| +.|.|.++.+
T Consensus 67 A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 67 AKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHHhCCcccCCCeEEEEEECch
Confidence 99999 599999999 9999999864
No 106
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=131.43 Aligned_cols=80 Identities=19% Similarity=0.342 Sum_probs=74.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRL 413 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V 413 (548)
...++|||+|||+++|+++|+++|+.| |.|..|+|+++.. |.++|||||+|.+.++|..||.+.+..|.|+.|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~----G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V 83 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDK----GQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLI 83 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTS----SCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhc----CCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEE
Confidence 356899999999999999999999999 9999999999987 99999999999999999999994449999999999
Q ss_pred Eeeec
Q 008928 414 SHAQQ 418 (548)
Q Consensus 414 ~~Ak~ 418 (548)
.++.+
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 99875
No 107
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.60 E-value=4.9e-15 Score=129.34 Aligned_cols=84 Identities=20% Similarity=0.324 Sum_probs=74.2
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|+.||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~ 74 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA-----------------TGKSKGYGFVSFFNKWDAENAI 74 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----------------CCCcceEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999999999965431 3457799999999999999999
Q ss_pred -HhcceeecCceeEeecCCCcc
Q 008928 302 -AFNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 -~lng~~~~gr~I~V~~a~~~~ 322 (548)
.||+..|.|+.|.|.++.+..
T Consensus 75 ~~l~g~~~~g~~l~V~~a~~~~ 96 (115)
T 2dgo_A 75 QQMGGQWLGGRQIRTNWATRKP 96 (115)
T ss_dssp HHTTTCEETTEECEEEESSCCC
T ss_pred HHhCCCEECCEEEEEEEccCCC
Confidence 599999999999999997653
No 108
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.60 E-value=2.6e-15 Score=123.60 Aligned_cols=78 Identities=28% Similarity=0.434 Sum_probs=70.4
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..++|||+|||+++++++|.++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..|+ .
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE-----------------TEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETT-----------------TTEECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCC-----------------CCccccEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999865532 3447799999999999999999 6
Q ss_pred hcceeecCceeEeecC
Q 008928 303 FNMAVIGGNHIRLDRA 318 (548)
Q Consensus 303 lng~~~~gr~I~V~~a 318 (548)
||+..|.|+.|.|.++
T Consensus 69 l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 69 MNESELFGRTIRVNLA 84 (85)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred hCCCEECCcEEEEEEc
Confidence 9999999999999986
No 109
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=4.5e-15 Score=127.79 Aligned_cols=81 Identities=23% Similarity=0.324 Sum_probs=76.2
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008928 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
...+.++|||+|||+.+++++|+++|..| |.|..|.|+.+. +|.++|||||+|.+.++|..||..|+ ..|.|+.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 34567999999999999999999999999 899999999997 99999999999999999999999877 9999999
Q ss_pred EEEEeee
Q 008928 411 LRLSHAQ 417 (548)
Q Consensus 411 I~V~~Ak 417 (548)
|.|.|+.
T Consensus 100 l~V~~a~ 106 (107)
T 3ulh_A 100 MNIQLVT 106 (107)
T ss_dssp CEEEEEC
T ss_pred EEEEEeC
Confidence 9999985
No 110
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=125.77 Aligned_cols=81 Identities=28% Similarity=0.467 Sum_probs=75.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|..| |.|..|.|+.+.. +.++|||||+|.+.++|..||..++ ..|.|+.|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~----G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQA----GPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 4467899999999999999999999999 8999999999975 9999999999999999999999777 99999999
Q ss_pred EEEeeec
Q 008928 412 RLSHAQQ 418 (548)
Q Consensus 412 ~V~~Ak~ 418 (548)
.|.|+..
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9999864
No 111
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=3.6e-15 Score=125.48 Aligned_cols=79 Identities=28% Similarity=0.426 Sum_probs=71.1
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|..||.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR------------------EGKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT------------------TSCEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC------------------CCCCceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999996643 23477999999999999999995
Q ss_pred -hcceeecCceeEeecCC
Q 008928 303 -FNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~ 319 (548)
||+..|.|+.|.|.++.
T Consensus 76 ~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 76 LLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp HHTTCEETTEECEEECCC
T ss_pred HhCCCEECCCEEEEEEcC
Confidence 99999999999999975
No 112
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.60 E-value=8.7e-16 Score=128.66 Aligned_cols=79 Identities=14% Similarity=0.192 Sum_probs=67.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcC--CeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008928 226 RTIFVGNLPLKVKKKTLIKEFIKFG--EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG--~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
.+|||+|||+++|+++|.++|+.|| .|.+|+|+.++. +|.++|||||+|.+.++|..|| .
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~-----------------~g~~kG~afV~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA-----------------NGQSKGFALVGVGSEASSKKLMDL 64 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTT-----------------TCCEEEEEEECC-CHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCC-----------------CCccCcEEEEEECCHHHHHHHHHH
Confidence 5899999999999999999999999 999999966542 3557899999999999999999 6
Q ss_pred hcceeecCceeEeecCCCc
Q 008928 303 FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~ 321 (548)
|||..|.|+.|.|.++.++
T Consensus 65 l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 65 LPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp GGGSCSSSCCCEECCC---
T ss_pred cCCCeeCCEEEEEEECCCC
Confidence 9999999999999999764
No 113
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.60 E-value=5.4e-15 Score=126.84 Aligned_cols=82 Identities=22% Similarity=0.326 Sum_probs=72.8
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...++|||+|||+++++++|..+|+.||.|..|.|+.++ ++.++|||||+|.+.++|..||
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~A~~Ai~ 74 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP------------------DGSSKGCAFVKFSSHTEAQAAIH 74 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS------------------SSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------------------CCCcCcEEEEEeCCHHHHHHHHH
Confidence 346899999999999999999999999999999996654 2346799999999999999999
Q ss_pred HhcceeecC---ceeEeecCCCcc
Q 008928 302 AFNMAVIGG---NHIRLDRACPPR 322 (548)
Q Consensus 302 ~lng~~~~g---r~I~V~~a~~~~ 322 (548)
.||+..|.| +.|.|.++.+..
T Consensus 75 ~l~g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 75 ALHGSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp HHSSCCCCTTCSSCCEEEESCSSC
T ss_pred HHcCCccCCCCCccEEEEECccCc
Confidence 599999988 999999997653
No 114
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.4e-15 Score=127.78 Aligned_cols=83 Identities=25% Similarity=0.359 Sum_probs=73.3
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++++++|.++|+.||.|..|.|+.+.. ++.++|||||+|.+.++|..||.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPH-----------------TKAPRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSS-----------------SCSBCSCEEEEESSSSHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC-----------------CCCCCeEEEEEECCHHHHHHHHH
Confidence 4468999999999999999999999999999999855431 34578999999999999999995
Q ss_pred -hcceeecCceeEeecCCCcc
Q 008928 303 -FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~~~~ 322 (548)
||+..|.|+.|.|.++.+..
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 74 AMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp HHSSCCBTTBCCEEEECSSCC
T ss_pred HcCCCEECCcEEEEEECCcCC
Confidence 99999999999999997543
No 115
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.3e-15 Score=127.48 Aligned_cols=84 Identities=29% Similarity=0.423 Sum_probs=73.9
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...++|||+|||+++++++|.++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..||
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE-----------------TEKHRGFAFVEFELAEDAAAAID 72 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSS-----------------SCCCSSEEEECCSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCC-----------------CCCcceEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999999999999999855431 3457899999999999999999
Q ss_pred HhcceeecCceeEeecCCCccc
Q 008928 302 AFNMAVIGGNHIRLDRACPPRK 323 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~~k 323 (548)
.||+..|.|+.|.|.++.+...
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 73 NMNESELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp HHTTEEETTEEEEEEECCCCCC
T ss_pred HhCCCEECCcEEEEEeCCCCCC
Confidence 5999999999999999976543
No 116
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.8e-15 Score=124.22 Aligned_cols=82 Identities=20% Similarity=0.313 Sum_probs=73.0
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (548)
..++|||+|||+++++++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..||.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSD-----------------TGRSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSS-----------------SCCCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCC-----------------CCceeeEEEEEECCHHHHHHHHHH
Confidence 458999999999999999999999999999999965432 34578999999999999999995
Q ss_pred hcceeecCceeEeecCCCcc
Q 008928 303 FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~ 322 (548)
||+..|.|+.|.|.++.+..
T Consensus 67 l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 67 LNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp HTTCCSSSSCCEEEESSCCC
T ss_pred hCCCeeCCcEEEEEEccccc
Confidence 99999999999999997653
No 117
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5e-15 Score=127.94 Aligned_cols=85 Identities=20% Similarity=0.312 Sum_probs=77.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCC-eEEEEEe-ecCCCCCCceEEEEEECCHHHHHHHHHHcC---CccCC
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS-VEAVRVI-RHPHMRVGKGIAYVLFKTREAANLVIKRRN---LKLRD 408 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~-I~~VrI~-~d~~tg~srG~AFV~F~~~e~A~~Al~~ln---~~l~G 408 (548)
.+.++|||+|||+.+++++|+++|..| |. |..|.|+ .+..+|.++|||||+|.+.++|..||..++ ..|.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKV----TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHH----STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHh----cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 356899999999999999999999999 87 9999998 788889999999999999999999999773 78999
Q ss_pred eEEEEEeeecCCCC
Q 008928 409 RELRLSHAQQNCTP 422 (548)
Q Consensus 409 r~I~V~~Ak~~~~~ 422 (548)
+.|.|.|+.+...+
T Consensus 82 ~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 82 HQIAVDWAEPEIDV 95 (109)
T ss_dssp BCCEEEESCSSCST
T ss_pred CeEEEEEcCCCCCc
Confidence 99999999876443
No 118
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=6.2e-15 Score=127.62 Aligned_cols=84 Identities=20% Similarity=0.334 Sum_probs=73.7
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++++++|+.+|..||.|..|.|+.++. ++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~A~ 74 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD-----------------TEHSKGCAFAQFMTQEAAQKCL 74 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSS-----------------SCCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCCCccEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999999999965432 3457899999999999999999
Q ss_pred -Hhc------ceeecCceeEeecCCCcc
Q 008928 302 -AFN------MAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 -~ln------g~~~~gr~I~V~~a~~~~ 322 (548)
.|| +..|.|+.|.|.++.+..
T Consensus 75 ~~~~~~~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 75 AAASLEAEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp HHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred HHhccccccCCcEEcCEEEEEEECCCCc
Confidence 588 999999999999997653
No 119
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.59 E-value=4.8e-15 Score=123.95 Aligned_cols=84 Identities=25% Similarity=0.296 Sum_probs=76.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|..| |.|..|.|+.+ ++.++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 78 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNEC----GHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 78 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTT----SCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3467899999999999999999999999 89999999985 78999999999999999999999877 99999999
Q ss_pred EEEeeecCCCC
Q 008928 412 RLSHAQQNCTP 422 (548)
Q Consensus 412 ~V~~Ak~~~~~ 422 (548)
.|.|+.+...+
T Consensus 79 ~v~~a~~~~~~ 89 (92)
T 2dgv_A 79 DVRIDRNASGP 89 (92)
T ss_dssp CCEECSCCSSC
T ss_pred EEEEcCCCCCC
Confidence 99999876443
No 120
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.3e-15 Score=125.36 Aligned_cols=83 Identities=19% Similarity=0.350 Sum_probs=73.0
Q ss_pred CCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 221 ~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
.....++|||+|||+++++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|..|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-------------------~~~~g~afV~f~~~~~a~~A 71 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-------------------RGSKGFGFVTFENSADADRA 71 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT-------------------TTTCCEEEEEESCHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-------------------CCCcEEEEEEECCHHHHHHH
Confidence 34556899999999999999999999999999999996543 12679999999999999999
Q ss_pred H-HhcceeecCceeEeecCCCcc
Q 008928 301 L-AFNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 301 l-~lng~~~~gr~I~V~~a~~~~ 322 (548)
| .||+..|.|+.|.|.++.+..
T Consensus 72 ~~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 72 REKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp HHHHTTCEETTEECEEEECCSSC
T ss_pred HHHhCCCEECCEEEEEEEcccCC
Confidence 9 599999999999999997653
No 121
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.59 E-value=2.5e-15 Score=131.79 Aligned_cols=81 Identities=19% Similarity=0.340 Sum_probs=76.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+++++++|+++|+.| |.|..|.|+.+..+|.++|||||+|.+.++|..||..++ ..|.|+.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPF----GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTS----CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4467899999999999999999999999 999999999999999999999999999999999999887 99999999
Q ss_pred EEEeee
Q 008928 412 RLSHAQ 417 (548)
Q Consensus 412 ~V~~Ak 417 (548)
+|.|++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999974
No 122
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=5.8e-15 Score=126.49 Aligned_cols=82 Identities=26% Similarity=0.357 Sum_probs=73.0
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++++++|.++|+.|| |..|.|+.+.. ++.++|||||+|.+.++|..||.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~~ 74 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKD-----------------TDKFKGFCYVEFDEVDSLKEALT 74 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSS-----------------SCSEEEEEEEEESSHHHHHHHGG
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCC-----------------CCccceEEEEEECCHHHHHHHHh
Confidence 4468999999999999999999999997 99999966542 34578999999999999999999
Q ss_pred hcceeecCceeEeecCCCcc
Q 008928 303 FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~ 322 (548)
||+..|.|+.|.|.++.+..
T Consensus 75 l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dng_A 75 YDGALLGDRSLRVDIAEGRK 94 (103)
T ss_dssp GTTCEETTEECEEEECCCCC
T ss_pred hCCCeECCeEEEEEEecCCC
Confidence 99999999999999997643
No 123
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.5e-15 Score=126.86 Aligned_cols=84 Identities=27% Similarity=0.377 Sum_probs=73.2
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++++++|.++|+.|| |..|.|+.++.+ .+.++|||||+|.+.++|..||.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~----------------~g~~~g~afV~f~~~~~a~~A~~ 75 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN----------------PERLKGFGYAEFEDLDSLLSALS 75 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSC----------------TTSBCSCEEEEESSHHHHHHHHG
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCC----------------CCCcCeEEEEEECCHHHHHHHHh
Confidence 3458999999999999999999999999 999998554311 14578999999999999999999
Q ss_pred hcceeecCceeEeecCCCccc
Q 008928 303 FNMAVIGGNHIRLDRACPPRK 323 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~k 323 (548)
||+..|.|+.|.|.++.+...
T Consensus 76 l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 76 LNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp GGTCEETTEECEEEECCCCCC
T ss_pred cCCCEeCCcEEEEEEccCCCC
Confidence 999999999999999986543
No 124
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=132.10 Aligned_cols=82 Identities=11% Similarity=0.136 Sum_probs=72.8
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCe-eEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEI-DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I-~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
....++|||+|||+++|+++|+++|+.||.| ..|.|+.+. +|.++|||||+|.+.++|..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~------------------~g~~~G~afV~F~~~~~a~~A 73 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN------------------NGQGLGQALVQFKNEDDARKS 73 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT------------------TSSCSSCEEEECSSHHHHHHH
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC------------------CCCcceEEEEEECCHHHHHHH
Confidence 3456899999999999999999999999999 889985543 345789999999999999999
Q ss_pred HHhcceeecCceeEeecCCCc
Q 008928 301 LAFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 301 l~lng~~~~gr~I~V~~a~~~ 321 (548)
|.+|+..|.|+.|.|.++.+.
T Consensus 74 l~~~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 74 ERLHRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp GGGCSEEETTEEEEEEEECHH
T ss_pred HHhCCCccCCeEEEEEECCHH
Confidence 988999999999999998643
No 125
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=5.8e-15 Score=129.00 Aligned_cols=83 Identities=18% Similarity=0.325 Sum_probs=73.8
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...++|||+|||+++++++|+++|+.||.|..|.|+.+.. ++.++|||||+|.+.++|..||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~~ 85 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ-----------------TNLSKCFGFVSYDNPVSAQAAIQ 85 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSS-----------------SCSEEEEEEEECSSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-----------------CCCcCccEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999966442 3457799999999999999999
Q ss_pred HhcceeecCceeEeecCCCcc
Q 008928 302 AFNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~~ 322 (548)
.||+..|.|+.|.|.++.+..
T Consensus 86 ~l~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 86 SMNGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp HHTTCEETTEECEEECCCCSC
T ss_pred HcCCCEECCEEEEEEEcCCCC
Confidence 699999999999999997653
No 126
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.59 E-value=4.1e-15 Score=125.79 Aligned_cols=80 Identities=15% Similarity=0.341 Sum_probs=71.8
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
.++|||+|||+++++++|.++|+.||.|..|.|+.++ .+|.++|||||+|.+.++|..|+ .|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDP-----------------QTGRSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT-----------------TTCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCC-----------------CCCccceEEEEEECCHHHHHHHHHHh
Confidence 5799999999999999999999999999999985543 13457899999999999999999 69
Q ss_pred cceeecCceeEeecCCCc
Q 008928 304 NMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~ 321 (548)
||..|.|+.|.|.++.+.
T Consensus 65 ~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 65 NGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp TTCEETTEECEEEECSCS
T ss_pred CCCeECCeEEEEEEcCCC
Confidence 999999999999999764
No 127
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-15 Score=123.59 Aligned_cols=76 Identities=20% Similarity=0.429 Sum_probs=73.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEEee
Q 008928 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHA 416 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~A 416 (548)
++|||+|||+.+++++|+++|+.| |.|..|.|+.++.+|.++|||||+|.+.++|..|+..++..|.|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF----GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT----SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 479999999999999999999999 8999999999998999999999999999999999999999999999999987
No 128
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.4e-15 Score=127.55 Aligned_cols=84 Identities=21% Similarity=0.331 Sum_probs=74.2
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++++++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..||
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~a~ 75 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT-----------------TNQSRGFGFVKFKDPNCVGTVL 75 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSS-----------------SCCEEEEEEEEESSTTHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-----------------CCCcceEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999999999966542 3457899999999999999999
Q ss_pred HhcceeecCceeEeecCCCcc
Q 008928 302 AFNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~~ 322 (548)
.+++..|.|+.|.|.++.+..
T Consensus 76 ~~~~~~~~g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 76 ASRPHTLDGRNIDPKPCTPRG 96 (105)
T ss_dssp HHCSEEETTEEEBCCCSCCSS
T ss_pred HhCCCeECCEEEEEEEccCCC
Confidence 779999999999999997654
No 129
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.8e-15 Score=125.60 Aligned_cols=82 Identities=27% Similarity=0.352 Sum_probs=72.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEE-EEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSV-RIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sV-ri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
..++|||+|||+++++++|..+|+.||.|..| .|+.++ .++.++|||||+|.+.++|..||.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~-----------------~~g~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDP-----------------DTGNSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCT-----------------TTCSCCSEEEEEBSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcC-----------------CCCCcCeEEEEEECCHHHHHHHHH
Confidence 46899999999999999999999999999999 885543 134578999999999999999996
Q ss_pred -hcceeecCceeEeecCCCcc
Q 008928 303 -FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~~~~ 322 (548)
||+..|.|+.|.|.++.+..
T Consensus 67 ~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 67 AMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp TTTTCEETTEECEEEESCCCC
T ss_pred HcCCCEECCEEEEEEEecccC
Confidence 99999999999999997654
No 130
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.59 E-value=1.6e-15 Score=122.19 Aligned_cols=75 Identities=21% Similarity=0.378 Sum_probs=67.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHhcce
Q 008928 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMA 306 (548)
Q Consensus 227 tVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~lng~ 306 (548)
+|||+|||+++++++|.++|+.||.|..|.|+.++ .++.++|||||+|.+.++|+.|+++|+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~a~~~~~~ 63 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK-----------------TTNRHRGFGFVTFESEDIVEKVCEIHFH 63 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCS-----------------SSTTSCBEEEEECSCHHHHHHHHSSSCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecC-----------------CCCCcCcEEEEEECCHHHHHHHHHCCCC
Confidence 49999999999999999999999999999985543 1345789999999999999999999999
Q ss_pred eecCceeEeecC
Q 008928 307 VIGGNHIRLDRA 318 (548)
Q Consensus 307 ~~~gr~I~V~~a 318 (548)
.|.|+.|.|.++
T Consensus 64 ~~~g~~l~v~~A 75 (75)
T 2mss_A 64 EINNKMVECKKA 75 (75)
T ss_dssp CSSSCCCEEECC
T ss_pred EECCEEEEEEeC
Confidence 999999999875
No 131
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=5.3e-15 Score=125.33 Aligned_cols=85 Identities=18% Similarity=0.233 Sum_probs=73.2
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (548)
..++|||+|||+++++++|+++|+.||.|..|.|+.++... .++.++|||||+|.+.++|..||.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~--------------gt~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKA--------------GVLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTT--------------CCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC--------------CCcCcccEEEEEECCHHHHHHHHHH
Confidence 45899999999999999999999999999999997654210 022477999999999999999995
Q ss_pred hcceeecCceeEeecCCCcc
Q 008928 303 FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~ 322 (548)
||+..|.|+.|.|.++.+..
T Consensus 70 l~g~~~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 70 LQGHTVDGHKLEVRISERAT 89 (98)
T ss_dssp STTCEETTEECEEECSSCSS
T ss_pred hCCCeeCCeEEEEEEccCCC
Confidence 89999999999999997653
No 132
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.59 E-value=6.1e-15 Score=130.46 Aligned_cols=80 Identities=20% Similarity=0.418 Sum_probs=75.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
..++|||+|||+.+++++|+++|+.| |.|..|.|+.++.+|.++|||||+|.+.++|..|| .++ ..|.|+.|.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSC----GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTT----SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEE
Confidence 46899999999999999999999999 89999999999889999999999999999999999 566 9999999999
Q ss_pred EeeecC
Q 008928 414 SHAQQN 419 (548)
Q Consensus 414 ~~Ak~~ 419 (548)
.|+.+.
T Consensus 110 ~~a~~~ 115 (124)
T 2jwn_A 110 LPKRTN 115 (124)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 999864
No 133
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4e-15 Score=126.98 Aligned_cols=83 Identities=23% Similarity=0.399 Sum_probs=73.3
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...++|||+|||+++++++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..||
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRE-----------------TQRSRGFGFVTFENIDDAKDAMM 72 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSS-----------------SCSCCSEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-----------------CCCcccEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999999999999999955431 3457799999999999999999
Q ss_pred HhcceeecCceeEeecCCCcc
Q 008928 302 AFNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~~ 322 (548)
.||+..|.|+.|.|.++.+..
T Consensus 73 ~l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 73 AMNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp HHTTCCTTSCCCEEEEEECCC
T ss_pred HhCCCEECCeEEEEEECCCCC
Confidence 699999999999999987543
No 134
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.58 E-value=3.4e-15 Score=123.53 Aligned_cols=81 Identities=21% Similarity=0.377 Sum_probs=71.2
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-h
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~-l 303 (548)
.++|||+|||+++|+++|.++|+.||.|..|.|+.+..+ .+.++|||||+|.+.++|..|+. |
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~----------------~~~~~g~afV~f~~~~~a~~A~~~l 67 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMH----------------PHLSKGYAYVEFENPDEAEKALKHM 67 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTE----------------EEEECSEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCC----------------CCCCCcEEEEEEecHHHHHHHHHHc
Confidence 579999999999999999999999999999998664421 12267999999999999999995 9
Q ss_pred cceeecCceeEeecCCCc
Q 008928 304 NMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~ 321 (548)
||..|.|+.|.|.++.++
T Consensus 68 ~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 68 DGGQIDGQEITATAVLAP 85 (88)
T ss_dssp TTCEETTEECEEEEECCC
T ss_pred CCCeECCeEEEEEECCCC
Confidence 999999999999998754
No 135
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.5e-15 Score=128.61 Aligned_cols=83 Identities=23% Similarity=0.468 Sum_probs=77.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
...++|||+|||+.+++++|+++|+.| |.|..|.|+.++.+|.++|||||+|.+.++|..||..++ ..|.|+.|.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEV----GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTT----SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhc----CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 346899999999999999999999999 899999999999899999999999999999999999887 999999999
Q ss_pred EEeeecCC
Q 008928 413 LSHAQQNC 420 (548)
Q Consensus 413 V~~Ak~~~ 420 (548)
|.|+.+..
T Consensus 82 v~~a~~~~ 89 (104)
T 1p1t_A 82 VDNAASEK 89 (104)
T ss_dssp EEETTCTT
T ss_pred EEeCCCcc
Confidence 99998753
No 136
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.9e-15 Score=123.90 Aligned_cols=79 Identities=25% Similarity=0.358 Sum_probs=70.6
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...++|||+|||+++++++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~A~~ 76 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKD-----------------TRKSKGVAFILFLDKDSAQNCTR 76 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSS-----------------SCCCTTCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-----------------CCCcccEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999999999999999955431 2457799999999999999999
Q ss_pred HhcceeecCceeEeecC
Q 008928 302 AFNMAVIGGNHIRLDRA 318 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a 318 (548)
.||+..|.|+.|.|.++
T Consensus 77 ~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 77 AINNKQLFGRVIKASIA 93 (94)
T ss_dssp HTTTEEETTEEEEEEEC
T ss_pred HcCCCeeCCcEEEEEec
Confidence 59999999999999986
No 137
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3e-15 Score=130.63 Aligned_cols=82 Identities=23% Similarity=0.256 Sum_probs=72.9
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++++++|.++|+.||.|..|.|+.+.. ++.++|||||+|.+.++|..||.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~~ 85 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN-----------------SRRSKGIAYVEFCEIQSVPLAIG 85 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCC-----------------SSSCCCCEEEEESCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCC-----------------CCccCcEEEEEeCcHHHHHHHHH
Confidence 4468999999999999999999999999999999965431 34578999999999999999999
Q ss_pred hcceeecCceeEeecCCCc
Q 008928 303 FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~ 321 (548)
||+..|.|+.|.|.++.+.
T Consensus 86 l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 86 LTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp HTTEEETTEEEEEEEHHHH
T ss_pred cCCCEeCCeEEEEEecCCC
Confidence 9999999999999998643
No 138
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6.8e-15 Score=126.51 Aligned_cols=85 Identities=21% Similarity=0.373 Sum_probs=73.4
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+.+++++|+++|+.||.|..|.|+.+. ..++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~----------------~~~~~~~g~afV~f~~~~~a~~A~ 75 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKM----------------TGTGAHRGFGFVDFITKQDAKKAF 75 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCC----------------SSSCSSCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCC----------------CCCCCcCceEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999999999985431 013457899999999999999999
Q ss_pred -Hh-cceeecCceeEeecCCCcc
Q 008928 302 -AF-NMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 -~l-ng~~~~gr~I~V~~a~~~~ 322 (548)
.| |+..|.|+.|.|.++.+..
T Consensus 76 ~~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 76 NALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp HHHHTCCBSSSCBCEEEECCCCC
T ss_pred HHhccCCeECCCEEEEEeCCCCC
Confidence 58 8999999999999997653
No 139
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1e-14 Score=126.25 Aligned_cols=81 Identities=21% Similarity=0.384 Sum_probs=73.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|..| |.|..|.|+.+ +.++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKY----GAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 4467899999999999999999999999 89999999655 5589999999999999999998877 99999999
Q ss_pred EEEeeecCC
Q 008928 412 RLSHAQQNC 420 (548)
Q Consensus 412 ~V~~Ak~~~ 420 (548)
.|.|+.+..
T Consensus 92 ~V~~a~~~~ 100 (109)
T 1x4a_A 92 RVEFPRSGR 100 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEEcccCC
Confidence 999998753
No 140
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.3e-15 Score=127.11 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=72.3
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++++++|..+|+.||.|..|.|+.+.. +|.++|||||+|.+.++|..||.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~~ 83 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR-----------------TGYLKGYTLVEYETYKEAQAAME 83 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TSSEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCC-----------------CCceeeEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999966442 34578999999999999999994
Q ss_pred -hcceeecCceeEeecCCC
Q 008928 303 -FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~~ 320 (548)
||+..|.|+.|.|.++.+
T Consensus 84 ~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 84 GLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp HHTTCBSSSSBCEEEESEE
T ss_pred HhcCCEECCcEEEEEeecC
Confidence 999999999999999864
No 141
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-15 Score=127.14 Aligned_cols=83 Identities=22% Similarity=0.323 Sum_probs=77.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|..| |.|..+.++.+..+|.++|||||+|.+.++|..||..++ ..|.|+.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~----G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGY----QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTS----CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHc----CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 3456899999999999999999999999 899888889988999999999999999999999998888 99999999
Q ss_pred EEEeeecC
Q 008928 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|.|+..+
T Consensus 88 ~V~~a~~~ 95 (98)
T 2cqp_A 88 KLVLGSGP 95 (98)
T ss_dssp EEEESSCS
T ss_pred EEEEcCCC
Confidence 99998754
No 142
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9.1e-15 Score=123.97 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=70.2
Q ss_pred CcccEEEEcCCCCCCcHHHHH----HHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~----~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~ 298 (548)
...++|||+|||+++++++|+ ++|+.||.|.+|.|+.+.. .+|||||+|.+.++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~--------------------~rg~afV~f~~~~~A~ 66 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD--------------------YQLKAVVQMENLQDAI 66 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS--------------------TTCCEEEEESSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC--------------------CCeEEEEEECCHHHHH
Confidence 345799999999999999999 9999999999999954331 1589999999999999
Q ss_pred HHHH-hcceeecCceeEeecCCCc
Q 008928 299 AALA-FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 299 ~Al~-lng~~~~gr~I~V~~a~~~ 321 (548)
.||. ||+..|.|+.|.|.++.+.
T Consensus 67 ~Ai~~l~g~~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 67 GAVNSLHRYKIGSKKILVSLATGA 90 (96)
T ss_dssp HHHHHHTTEEETTEEEEEEECCCS
T ss_pred HHHHHhCCCEECCeEEEEEEcCCC
Confidence 9995 9999999999999999754
No 143
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.58 E-value=6.3e-15 Score=128.20 Aligned_cols=84 Identities=19% Similarity=0.306 Sum_probs=70.8
Q ss_pred CCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 221 ~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
+....++|||+|||+++|+++|..+|+.||.|..|.|+.+. .+|.++|||||+|.+.++|..|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-----------------~tg~~kg~afV~f~~~~~A~~A 83 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP-----------------LTKRSRGFGFVTFMDQAGVDKV 83 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCT-----------------TTCCCTTCEEEEESSHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECC-----------------CCCCcCcEEEEEECCHHHHHHH
Confidence 34456899999999999999999999999999999995543 2355789999999999999999
Q ss_pred HHhcceeecCceeEeecCCCc
Q 008928 301 LAFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 301 l~lng~~~~gr~I~V~~a~~~ 321 (548)
|...+..|.|+.|.|.++.+.
T Consensus 84 i~~~~~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 84 LAQSRHELDSKTIDPKVAFPR 104 (109)
T ss_dssp HHSSCEEETTEEEEEEECCCC
T ss_pred HHHCCCcCCCEEEEEEEccCC
Confidence 976679999999999998754
No 144
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-15 Score=133.05 Aligned_cols=81 Identities=26% Similarity=0.381 Sum_probs=76.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
...++|||+|||+.+++++|+++|..| |.|..|.|+.+..++.++|||||+|.+.++|..|| .++ ..|.|+.|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 97 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAV----GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPII 97 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEE
Confidence 346899999999999999999999999 89999999999999999999999999999999999 666 999999999
Q ss_pred EEeeecC
Q 008928 413 LSHAQQN 419 (548)
Q Consensus 413 V~~Ak~~ 419 (548)
|.|+.+.
T Consensus 98 V~~a~~~ 104 (114)
T 2cq4_A 98 VQASQAE 104 (114)
T ss_dssp EEEHHHH
T ss_pred EEecCCC
Confidence 9999875
No 145
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=1.4e-14 Score=128.45 Aligned_cols=86 Identities=22% Similarity=0.292 Sum_probs=79.1
Q ss_pred CcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCe
Q 008928 331 PLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDR 409 (548)
Q Consensus 331 ~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr 409 (548)
......++|||+|||+.+++++|+++|+.| |.|..|.|+.+. +|.++|||||+|.+.++|..||..++ ..|.|+
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 104 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGR 104 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTT----SCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 345667899999999999999999999999 899999999997 89999999999999999999999777 999999
Q ss_pred EEEEEeeecCCC
Q 008928 410 ELRLSHAQQNCT 421 (548)
Q Consensus 410 ~I~V~~Ak~~~~ 421 (548)
.|.|.||.+...
T Consensus 105 ~l~V~~a~~~~~ 116 (124)
T 2kt5_A 105 PMDIQLVASQID 116 (124)
T ss_dssp EEEEEEECCTTC
T ss_pred EEEEEEeCCCCC
Confidence 999999987643
No 146
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=121.57 Aligned_cols=80 Identities=20% Similarity=0.322 Sum_probs=74.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|..| .|..|.|+++ .+|.++|||||+|.+.++|..||. ++ ..|.|+.|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-----~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i 79 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-----KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYI 79 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-----CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-----CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEE
Confidence 3457899999999999999999999998 5889999999 789999999999999999999999 77 99999999
Q ss_pred EEEeeecC
Q 008928 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|.++.+.
T Consensus 80 ~v~~a~~~ 87 (91)
T 2dgw_A 80 EVFREKSG 87 (91)
T ss_dssp EEEEESSC
T ss_pred EEEECCcC
Confidence 99999875
No 147
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.7e-15 Score=126.02 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=75.8
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEE-EEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeE
Q 008928 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA-VRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRE 410 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~-VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~ 410 (548)
......+|||+|||+.+++++|+++|..| |.|.. |.|+.+ .+|.++|||||+|.+.++|..||...+..|+|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGL----EIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTC----CEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 34567899999999999999999999999 89987 889998 7899999999999999999999998559999999
Q ss_pred EEEEeeecC
Q 008928 411 LRLSHAQQN 419 (548)
Q Consensus 411 I~V~~Ak~~ 419 (548)
|.|.++.+.
T Consensus 86 i~v~~~~~~ 94 (104)
T 1wg5_A 86 IEIFKSSRA 94 (104)
T ss_dssp CEEEEECTT
T ss_pred EEEEECCHH
Confidence 999998764
No 148
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.3e-15 Score=125.56 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=72.9
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCee-EEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEID-SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~-sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
...++|||+|||+++++++|+++|+.||.|. +|.|+.++. ++.++|||||+|.+.++|+.||
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~ 69 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRL-----------------TGIPAGYCFVEFADLATAEKCL 69 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSS-----------------SCCEEEEEEEECSCHHHHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCC-----------------CCCcCCEEEEEeCCHHHHHHHH
Confidence 3468999999999999999999999999999 999966542 3457799999999999999999
Q ss_pred H-hcceeecCce----eEeecCCCc
Q 008928 302 A-FNMAVIGGNH----IRLDRACPP 321 (548)
Q Consensus 302 ~-lng~~~~gr~----I~V~~a~~~ 321 (548)
. ||+..|.|+. |.|.++.+.
T Consensus 70 ~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 70 HKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp HTTTTSEESSCSSCEECCEEETTCC
T ss_pred HHHcCCccCCCCcceeEEEeecCCC
Confidence 5 9999999999 999998754
No 149
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=1.8e-15 Score=121.88 Aligned_cols=75 Identities=16% Similarity=0.340 Sum_probs=70.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEEee
Q 008928 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHA 416 (548)
Q Consensus 338 tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~A 416 (548)
+|||+|||+++++++|+++|+.| |.|..|.|+.++.+|.++|||||+|.+.++|..|+.+.+..|.|+.|.|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF----GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT----SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 48999999999999999999999 8999999999988999999999999999999999984449999999999986
No 150
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-14 Score=125.82 Aligned_cols=81 Identities=23% Similarity=0.439 Sum_probs=71.8
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++|+++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|+.||
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~--------------------~~~~~g~afV~f~~~~~A~~A~ 78 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN--------------------RRGGPPFAFVEFEDPRDAEDAV 78 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC--------------------SSSSSCCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--------------------CCCCCcEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999999999832 1236799999999999999999
Q ss_pred -HhcceeecCceeEeecCCCcc
Q 008928 302 -AFNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 -~lng~~~~gr~I~V~~a~~~~ 322 (548)
.||+..|.|+.|.|.++.+..
T Consensus 79 ~~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 79 YGRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp HHHTTCEETTEECEEECCCCCC
T ss_pred HHcCCCEECCeEEEEEEcccCC
Confidence 699999999999999997654
No 151
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.57 E-value=4e-15 Score=133.62 Aligned_cols=83 Identities=19% Similarity=0.348 Sum_probs=78.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
..+.++|||+|||+.+++++|+++|..| |.|..|.|+.++.++.++|||||+|.+.++|..||..++ ..|.|+.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKY----GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTT----SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4567899999999999999999999999 899999999999999999999999999999999999877 99999999
Q ss_pred EEEeeecC
Q 008928 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|.|+.+.
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 99999864
No 152
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.2e-15 Score=130.94 Aligned_cols=82 Identities=24% Similarity=0.327 Sum_probs=76.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCe-EEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSV-EAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I-~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|..| |.| ..|.|+.|. +|.++|||||+|.+.++|..||...+..|.|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGI----PVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTS----CCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhC----CCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEE
Confidence 3457899999999999999999999999 889 889999997 9999999999999999999999884499999999
Q ss_pred EEEeeecC
Q 008928 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|.++.+.
T Consensus 87 ~v~~a~~~ 94 (114)
T 2cpy_A 87 FVHVVTLE 94 (114)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99999865
No 153
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.57 E-value=2.4e-15 Score=126.54 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=74.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
...++|||+|||+.+++++|+++|..| |.|..|.++.+..++.++|||||+|.+.++|..||..|+ ..|.|+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGY----QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTS----CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 346899999999999999999999999 899989999998999999999999999999999999777 999999999
Q ss_pred EEeeec
Q 008928 413 LSHAQQ 418 (548)
Q Consensus 413 V~~Ak~ 418 (548)
|.++.+
T Consensus 89 v~~a~s 94 (95)
T 2ek1_A 89 LSGPSS 94 (95)
T ss_dssp EECCC-
T ss_pred EEeccC
Confidence 999764
No 154
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.57 E-value=6.8e-15 Score=126.41 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=73.3
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
+...++|||+|||+++++++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..||
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~A~ 72 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF-----------------TGMHKGCAFLTYCERESALKAQ 72 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSS-----------------SCSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-----------------CCCcceEEEEEECCHHHHHHHH
Confidence 44568999999999999999999999999999999855431 3457899999999999999999
Q ss_pred -Hhcceee---cCceeEeecCCCcc
Q 008928 302 -AFNMAVI---GGNHIRLDRACPPR 322 (548)
Q Consensus 302 -~lng~~~---~gr~I~V~~a~~~~ 322 (548)
.||+..+ .|+.|.|.++.+..
T Consensus 73 ~~l~g~~~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 73 SALHEQKTLPGMNRPIQVKPADSES 97 (106)
T ss_dssp HHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred HHhcCCcccCCCCceEEEEECCccc
Confidence 5999887 88999999997654
No 155
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8.3e-15 Score=125.44 Aligned_cols=82 Identities=23% Similarity=0.335 Sum_probs=73.0
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhh-cCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIK-FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~-fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
...++|||+|||+++|+++|.++|+. ||.|..|.|+.+. ++.++|||||+|.+.++|..||
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~ 68 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ------------------TGVSKGYGFVKFTDELEQKRAL 68 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT------------------TCCEEEEEEEEESCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC------------------CCCccceEEEEECCHHHHHHHH
Confidence 44689999999999999999999999 9999999996653 2347799999999999999999
Q ss_pred H-hccee-ecCceeEeecCCCcc
Q 008928 302 A-FNMAV-IGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~-lng~~-~~gr~I~V~~a~~~~ 322 (548)
. ||+.. |.|+.|.|.++.+..
T Consensus 69 ~~l~g~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 69 TECQGAVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp HHTTTCCSSSSSCCCCCBCCCCC
T ss_pred HHccCCcccCCEeEEEEEccCCC
Confidence 5 99999 999999999997643
No 156
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.3e-15 Score=128.96 Aligned_cols=82 Identities=20% Similarity=0.389 Sum_probs=73.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHh
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (548)
..++|||+|||+++|+++|+++|..||.|..|.|+.++. ++.++|||||+|.+.++|..||.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA-----------------SKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTT-----------------TSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-----------------CCCcCceEEEEeCCHHHHHHHHHh
Confidence 458999999999999999999999999999999965431 345789999999999999999977
Q ss_pred cceeecCceeEeecCCCcc
Q 008928 304 NMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~ 322 (548)
++..|.|+.|.|.++.+..
T Consensus 89 ~~~~~~g~~l~V~~a~~~~ 107 (116)
T 1x4b_A 89 RPHSIDGRVVEPKRAVARE 107 (116)
T ss_dssp CSEEETTEEEEEECCSSCC
T ss_pred CCcEECCEEEEEEECCCCc
Confidence 9999999999999997653
No 157
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=126.69 Aligned_cols=82 Identities=22% Similarity=0.245 Sum_probs=72.7
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++++++|+++|..||.|..|.|+.+. ++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~ 73 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK------------------DGKSRGIGTVTFEQSIEAVQAI 73 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT------------------TCSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------------------CCCeeeEEEEEECCHHHHHHHH
Confidence 3446899999999999999999999999999999996643 2347799999999999999999
Q ss_pred H-hcceeecCceeEeecCCCc
Q 008928 302 A-FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 ~-lng~~~~gr~I~V~~a~~~ 321 (548)
. ||+..|.|+.|.|.++...
T Consensus 74 ~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 74 SMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp HHHTTCEETTEECEEEECSCC
T ss_pred HHhCCCEeCCCEEEEEEcccC
Confidence 5 9999999999999998643
No 158
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.7e-15 Score=127.83 Aligned_cols=78 Identities=19% Similarity=0.380 Sum_probs=68.8
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++|+++|+++|++||.|.+|+|+. .+|||||+|.+.++|..|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-----------------------~kGfaFVeF~~~~~A~~Ai 69 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-----------------------GKNQAFIEMNTEEAANTMV 69 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-----------------------CCCEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999999999843 3589999999999999999
Q ss_pred H-hc--ceeecCceeEeecCCCcc
Q 008928 302 A-FN--MAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~-ln--g~~~~gr~I~V~~a~~~~ 322 (548)
. |+ +..|.|+.|.|.++.+..
T Consensus 70 ~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 70 NYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp HHHTTSCCEETTEECCBCCCSSSS
T ss_pred HHhccCCceECCEEEEEEEcCCCC
Confidence 5 65 578999999999997643
No 159
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.4e-15 Score=126.48 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=70.7
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeE-EEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS-VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~s-Vri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
...++|||+|||+++|+++|+++|..||.|.. |.|+.+ .+|.++|||||+|.+.++|..||
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~------------------~~g~~~G~afV~F~~~~~a~~A~ 74 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD------------------FQGRSTGEAFVQFASQEIAEKAL 74 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC------------------SSSCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC------------------CCCCcceEEEEEECCHHHHHHHH
Confidence 44689999999999999999999999999987 777432 14557899999999999999999
Q ss_pred HhcceeecCceeEeecCCCc
Q 008928 302 AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~ 321 (548)
.+|+..|.|+.|.|.++...
T Consensus 75 ~~~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 75 KKHKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp TTTTCCSSSSCCEEEEECTT
T ss_pred HhCcchhCCcEEEEEECCHH
Confidence 77999999999999988643
No 160
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.7e-15 Score=126.75 Aligned_cols=81 Identities=22% Similarity=0.298 Sum_probs=73.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELR 412 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~ 412 (548)
....++|||+|||+++++++|+++|..| | +..|.|+.+. ++.++|||||+|.+.++|..||.+.+..|.|+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPL----N-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVE 85 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSC----C-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHc----C-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEE
Confidence 3456899999999999999999999999 8 4499999997 89999999999999999999996544999999999
Q ss_pred EEeeecC
Q 008928 413 LSHAQQN 419 (548)
Q Consensus 413 V~~Ak~~ 419 (548)
|.++.+.
T Consensus 86 V~~~~~~ 92 (102)
T 1wez_A 86 LFLNSTA 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9998764
No 161
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.6e-15 Score=128.48 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=71.1
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++|+++|+++|+.||.| .|.|+.++ ++.++|||||+|.+.++|+.||
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~------------------~g~~~G~afV~F~~~~~a~~Al 72 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP------------------DGRVTGEADVEFATHEDAVAAM 72 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS------------------SSCEEEEEEEECSSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC------------------CCCEeeEEEEEECCHHHHHHHH
Confidence 3446899999999999999999999999954 99986643 3457899999999999999999
Q ss_pred HhcceeecCceeEeecCCCc
Q 008928 302 AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~ 321 (548)
.+|+..|.|+.|.|.++.+.
T Consensus 73 ~~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 73 AKDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp TTSSCCSSSSCCEEEEECCC
T ss_pred HhCCCeECCcEEEEEECCCC
Confidence 99999999999999988654
No 162
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.7e-15 Score=127.35 Aligned_cols=85 Identities=18% Similarity=0.209 Sum_probs=73.4
Q ss_pred CCCcccEEEEcCCCCCCcHHHHHHHhhhcCCee--------EEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEec
Q 008928 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEID--------SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (548)
Q Consensus 221 ~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~--------sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~ 292 (548)
+....++|||+|||+++|+++|+++|+.||.|. .|.|+.+. .++.++|||||+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~-----------------~~g~~~g~afV~f~ 73 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDK-----------------ETGKPKGDATVSYE 73 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCT-----------------TTCSBCSEEEEEBS
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeC-----------------CCCCeeeEEEEEEC
Confidence 344578999999999999999999999999998 58775432 23557899999999
Q ss_pred CHHHHHHHHH-hcceeecCceeEeecCCCcc
Q 008928 293 SEQSTEAALA-FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 293 s~e~A~~Al~-lng~~~~gr~I~V~~a~~~~ 322 (548)
+.++|..||. ||+..|.|+.|.|.++.+..
T Consensus 74 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 74 DPPTAKAAVEWFDGKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEECSSCCC
T ss_pred CHHHHHHHHHHcCCCccCCCEEEEEECCCCC
Confidence 9999999995 99999999999999997653
No 163
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.1e-15 Score=127.95 Aligned_cols=81 Identities=22% Similarity=0.391 Sum_probs=72.7
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..++|||+|||+.+++++|+++|+.||.|..|.|+.++. +|.++|||||+|.+.++|..|| .
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE-----------------TGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETT-----------------TTEEEEEEEEECSCHHHHHHHHHH
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCC-----------------CCccceEEEEEECCHHHHHHHHHH
Confidence 458999999999999999999999999999999966542 3457899999999999999999 5
Q ss_pred hcceeecCceeEeecCCCc
Q 008928 303 FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~ 321 (548)
||+..|.|+.|.|.++.+.
T Consensus 70 l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 70 LNGREFSGRALRVDNAASE 88 (104)
T ss_dssp SSSBSCSSSCBEEEETTCT
T ss_pred hCCCeeCCcEEEEEeCCCc
Confidence 9999999999999999764
No 164
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.57 E-value=8.2e-15 Score=126.88 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=71.9
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+.+++++|..+|+.||.|..|.|+.+. .+|.++|||||+|.+.++|..||.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR-----------------RTGFSKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCT-----------------TTSSBCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC-----------------CCCCcceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999985433 234578999999999999999995
Q ss_pred -hcceeecCceeEeecCCC
Q 008928 303 -FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~~ 320 (548)
|||..|.|+.|.|.++.+
T Consensus 87 ~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 87 ALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp HHTTCEETTEECEEEESEE
T ss_pred HcCCCEECCcEEEEEEccc
Confidence 999999999999999864
No 165
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=7.4e-15 Score=127.95 Aligned_cols=83 Identities=23% Similarity=0.251 Sum_probs=75.5
Q ss_pred CCccEEEEeCCCCCCCHHHHH---HHHhccCCCCCCeEEEEEeecCCCC---CCceEEEEEECCHHHHHHHHHHcC-Ccc
Q 008928 334 DIKKTVFVGNLPFDVKDEEIY---QLFCGLNDLESSVEAVRVIRHPHMR---VGKGIAYVLFKTREAANLVIKRRN-LKL 406 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~---~~F~~~g~~~G~I~~VrI~~d~~tg---~srG~AFV~F~~~e~A~~Al~~ln-~~l 406 (548)
...++|||+|||+.+++++|+ ++|..| |.|..|.|+.+..++ .++|||||+|.+.++|..||..|+ ..|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~----G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKF----GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTT----SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhcc----CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 356899999999999999999 999999 999999999987644 566999999999999999999877 999
Q ss_pred CCeEEEEEeeecCC
Q 008928 407 RDRELRLSHAQQNC 420 (548)
Q Consensus 407 ~Gr~I~V~~Ak~~~ 420 (548)
.|+.|.|.||.++.
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 99999999998764
No 166
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.57 E-value=4.5e-15 Score=131.01 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=71.8
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCC---eeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGE---IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~---I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~ 299 (548)
...++|||+|||+++|+++|+++|+.||. |..|+|+.+. .|.++|||||+|.+.++|.+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~------------------~g~~~G~afV~F~~~~~a~~ 76 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR------------------EGRQSGEAFVELESEDDVKL 76 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS------------------SSCEEEEEEEEBSSHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC------------------CCCCCeEEEEEECCHHHHHH
Confidence 34689999999999999999999999999 8999996643 24578999999999999999
Q ss_pred HHHhcceeecCceeEeecCCC
Q 008928 300 ALAFNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 300 Al~lng~~~~gr~I~V~~a~~ 320 (548)
||.+|+..|.|+.|.|.++..
T Consensus 77 Al~~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 77 ALKKDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp HGGGTTEEETTEEEEEEEECH
T ss_pred HHhcCCCeECCeEEEEEECCH
Confidence 999999999999999999853
No 167
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=121.54 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=71.7
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++++++|+++|+.| .|..|.|+.+. +|.++|||||+|.+.++|..||.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA------------------HGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT------------------TSCEEEEEEEECSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC------------------CCCCceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999 89999996542 34578999999999999999999
Q ss_pred hcceeecCceeEeecCCCc
Q 008928 303 FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~ 321 (548)
||+..|.|+.|.|.++.+.
T Consensus 69 ~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 69 CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp SCSEEETTEEEEEEEESSC
T ss_pred hCCceeCCcEEEEEECCcC
Confidence 9999999999999998654
No 168
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.57 E-value=9.6e-15 Score=125.71 Aligned_cols=79 Identities=15% Similarity=0.252 Sum_probs=71.1
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+.+++++|.++|+.||.|..|.|+.+. +|.++|||||+|.+.++|..||.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~~ 88 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR------------------SGRSLGTADVHFERKADALKAMK 88 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT------------------TSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------------------CCCcceEEEEEECCHHHHHHHHH
Confidence 446899999999999999999999999999999996644 34477999999999999999995
Q ss_pred -hcceeecCceeEeecCC
Q 008928 303 -FNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~ 319 (548)
||+..|.|+.|.|.++.
T Consensus 89 ~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 89 QYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHTTCEETTEECEEEEEC
T ss_pred HhCCCEeCCcEEEEEEeC
Confidence 99999999999999874
No 169
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.56 E-value=9.3e-15 Score=126.98 Aligned_cols=83 Identities=18% Similarity=0.316 Sum_probs=73.4
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+.+++++|.++|+.||.|..|.|+.++. +|.++|||||+|.+.++|..||
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~F~~~~~A~~Ai 85 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE-----------------TGRSKGYGFITFSDSECAKKAL 85 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETT-----------------TTEEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----------------CCccceEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999999999976542 3447799999999999999999
Q ss_pred -HhcceeecCceeEeecCCCc
Q 008928 302 -AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 -~lng~~~~gr~I~V~~a~~~ 321 (548)
.|||..|.|+.|.|.++.+.
T Consensus 86 ~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 86 EQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp HHHTTCCSSSSCCEEECSCSS
T ss_pred HHcCCCEECCEEEEEEEcccC
Confidence 59999999999999998653
No 170
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.56 E-value=4.7e-15 Score=134.67 Aligned_cols=81 Identities=14% Similarity=0.235 Sum_probs=74.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCC---eEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCC
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS---VEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRD 408 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~---I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~G 408 (548)
....++|||+|||+++|+++|+++|..| |. |..|+|++|.. |.++|||||+|.+.++|..||. ++ ..|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~----G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g 114 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDC----TIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGH 114 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTC----CCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECC
Confidence 4457899999999999999999999999 77 88999999976 9999999999999999999999 76 99999
Q ss_pred eEEEEEeeecC
Q 008928 409 RELRLSHAQQN 419 (548)
Q Consensus 409 r~I~V~~Ak~~ 419 (548)
+.|.|.++.+.
T Consensus 115 r~i~V~~a~~~ 125 (136)
T 2hgl_A 115 RYIEVFKSHRT 125 (136)
T ss_dssp SEEEEEECCHH
T ss_pred EEEEEEECChH
Confidence 99999998653
No 171
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=126.66 Aligned_cols=83 Identities=22% Similarity=0.333 Sum_probs=72.2
Q ss_pred CCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 221 ~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
.+...++|||+|||+++|+++|+++|+.||.|..|+|+.++. ++.++|||||+|.+.++|+.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A 75 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ-----------------TGKSRGYGFVTMADRAAAERA 75 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSS-----------------SCCCCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCC-----------------CCccceEEEEEECCHHHHHHH
Confidence 345578999999999999999999999999999999955431 345789999999999999999
Q ss_pred HH-hcceeecCceeEeecCCCc
Q 008928 301 LA-FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 301 l~-lng~~~~gr~I~V~~a~~~ 321 (548)
|. +++ .|.|+.|.|.++...
T Consensus 76 i~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 76 CKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp HTCSSC-EETTEECEEEESTTT
T ss_pred HHhCCC-cCCCEEEEEEEcccC
Confidence 95 777 899999999999654
No 172
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.56 E-value=1.1e-14 Score=121.71 Aligned_cols=80 Identities=23% Similarity=0.253 Sum_probs=71.3
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|..||.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-------------------~g~~~g~afV~f~~~~~a~~a~~ 66 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-------------------NGKSKGCGVVKFESPEVAERACR 66 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-------------------SSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-------------------CCCcceEEEEEECCHHHHHHHHH
Confidence 34689999999999999999999999999999998541 23467999999999999999995
Q ss_pred -hcceeecCceeEeecCCCc
Q 008928 303 -FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~~~ 321 (548)
||+..|.|+.|.|.++.+.
T Consensus 67 ~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 67 MMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp HHTTCCBTTBCCCCEECSCC
T ss_pred HhCCCEECCcEEEEEEcCCC
Confidence 9999999999999998764
No 173
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=123.61 Aligned_cols=82 Identities=22% Similarity=0.310 Sum_probs=74.2
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008928 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
.....++|||+|||+.+++++|+++|..| + .|.++.+..++.++|||||+|.+.++|..||..|+ ..|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~----~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS----V---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC----S---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC----e---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 34567999999999999999999999987 3 57788898899999999999999999999999877 9999999
Q ss_pred EEEEeeecCC
Q 008928 411 LRLSHAQQNC 420 (548)
Q Consensus 411 I~V~~Ak~~~ 420 (548)
|.|.|+.+..
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999998754
No 174
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.56 E-value=2.2e-14 Score=122.97 Aligned_cols=78 Identities=23% Similarity=0.353 Sum_probs=70.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
..+.++|||+|||+.+++++|+++|..| |.|..|.|+ +|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQF----GKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHH----SCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 4467899999999999999999999999 899999887 4599999999999999999877 99999999
Q ss_pred EEEeeecCCCC
Q 008928 412 RLSHAQQNCTP 422 (548)
Q Consensus 412 ~V~~Ak~~~~~ 422 (548)
.|.|+.+....
T Consensus 76 ~v~~a~~~~~~ 86 (103)
T 2dgu_A 76 EIVFAKPPDQK 86 (103)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEcCCCccc
Confidence 99999886443
No 175
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.1e-14 Score=122.78 Aligned_cols=83 Identities=16% Similarity=0.230 Sum_probs=72.4
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++++++|.++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~a~~A~ 74 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-----------------TGHSKGFGFVRFTEYETQVKVM 74 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS-----------------SCSEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCCccceEEEEECCHHHHHHHH
Confidence 34468999999999999999999999999999999966542 3457899999999999999999
Q ss_pred HhcceeecCceeEeecCCCcc
Q 008928 302 AFNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~~ 322 (548)
. ++..|.|+.|.|.++.+..
T Consensus 75 ~-~~~~~~g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 75 S-QRHMIDGRWCDCKLPNSKQ 94 (103)
T ss_dssp H-SCEEETTEEEEEECCCTTC
T ss_pred H-cCCeeCCeEEEEEecCCCC
Confidence 7 5789999999999997653
No 176
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.56 E-value=3.5e-15 Score=133.87 Aligned_cols=82 Identities=17% Similarity=0.328 Sum_probs=76.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEE--EEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-C----c
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA--VRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-L----K 405 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~--VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~----~ 405 (548)
....++|||+|||+++++++|+++|..| |.|.. |+|++|+.+|.++|||||+|.+. +|..||..|+ . .
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~----G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPY----AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGG----CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3457899999999999999999999999 89976 99999999999999999999999 9999999888 7 9
Q ss_pred cCCeEEEEEeeecC
Q 008928 406 LRDRELRLSHAQQN 419 (548)
Q Consensus 406 l~Gr~I~V~~Ak~~ 419 (548)
|.|+.|.|.|+.+.
T Consensus 95 ~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 95 IDGKTINVEFAKGS 108 (131)
T ss_dssp GGGCCCCCEECCCS
T ss_pred CCCEEEEEEECCCC
Confidence 99999999999864
No 177
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=123.57 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=72.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|..| |.| .|+.+ .++.++|||||+|.+.++|..||..++ ..|.|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKA----TFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSC----SEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 4567999999999999999999999999 766 56777 689999999999999999999999887 99999999
Q ss_pred EEEeeecCC
Q 008928 412 RLSHAQQNC 420 (548)
Q Consensus 412 ~V~~Ak~~~ 420 (548)
.|.|+.+..
T Consensus 84 ~v~~a~~~~ 92 (101)
T 2fc9_A 84 RLELQGPRG 92 (101)
T ss_dssp EEEECSSCC
T ss_pred EEEEcCCCC
Confidence 999998763
No 178
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2e-15 Score=124.60 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=74.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
.+.++|||+|||+.+++++|+++|+.| |.|..|.|+.++.++.++|||||+|.+.++|..||..|+ ..|.|+.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 78 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPY----GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 78 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTT----SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEe
Confidence 356899999999999999999999999 899999999999999999999999999999999999887 899999998
Q ss_pred EEeee
Q 008928 413 LSHAQ 417 (548)
Q Consensus 413 V~~Ak 417 (548)
|.|+.
T Consensus 79 ~~~~~ 83 (85)
T 1x4e_A 79 QSGPS 83 (85)
T ss_dssp SSCCC
T ss_pred ecCCC
Confidence 87653
No 179
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=125.51 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=70.9
Q ss_pred CCcccEEEEcCCCCCC------cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHH
Q 008928 222 GKLLRTIFVGNLPLKV------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~------tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e 295 (548)
....++|||+|||+.+ |+++|..+|+.||.|..|.|+. . +|.++|||||+|.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~----~---------------~g~~~G~afV~f~~~~ 72 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE----E---------------DGKTKGYIFLEYASPA 72 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC----B---------------TTBSCCEEEEEECSSS
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC----C---------------CCCeeeEEEEEECCHH
Confidence 3446899999999999 8899999999999999998841 1 3457899999999999
Q ss_pred HHHHHHH-hcceeecCc-eeEeecCCCc
Q 008928 296 STEAALA-FNMAVIGGN-HIRLDRACPP 321 (548)
Q Consensus 296 ~A~~Al~-lng~~~~gr-~I~V~~a~~~ 321 (548)
+|..||. |||..|.|+ .|.|.++...
T Consensus 73 ~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 73 HAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp HHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred HHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 9999995 999999998 9999998643
No 180
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=123.42 Aligned_cols=80 Identities=24% Similarity=0.258 Sum_probs=71.1
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeE--------EEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecC
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS--------VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~s--------Vri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s 293 (548)
....++|||+|||+++++++|+++|+.||.|.. |.|+.++. +|.++|||||+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-----------------~g~~~G~afV~f~~ 72 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE-----------------TGKLKGEATVSFDD 72 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT-----------------TCSEEEEEEEEBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC-----------------CCCeeeEEEEEECC
Confidence 345689999999999999999999999999999 88865431 34578999999999
Q ss_pred HHHHHHHH-HhcceeecCceeEeecC
Q 008928 294 EQSTEAAL-AFNMAVIGGNHIRLDRA 318 (548)
Q Consensus 294 ~e~A~~Al-~lng~~~~gr~I~V~~a 318 (548)
.++|..|| .|||..|.|+.|.|.++
T Consensus 73 ~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 73 PPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 99999999 59999999999999987
No 181
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=7.2e-15 Score=127.03 Aligned_cols=77 Identities=12% Similarity=0.164 Sum_probs=70.1
Q ss_pred CCCccEEEEeCCCC-CCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC---CccCC
Q 008928 333 YDIKKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN---LKLRD 408 (548)
Q Consensus 333 ~~~~~tLfV~NLp~-~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln---~~l~G 408 (548)
.++.++|||+|||+ .+++++|+++|.+| |.|..|.|+++ +|||||+|.+.++|..||..|+ ..|.|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~f----G~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPF----GVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGG----SCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhc----CCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 44678999999999 99999999999999 99999999876 5899999999999999998776 45999
Q ss_pred eEEEEEeeecC
Q 008928 409 RELRLSHAQQN 419 (548)
Q Consensus 409 r~I~V~~Ak~~ 419 (548)
++|.|.||...
T Consensus 82 r~l~V~~a~~~ 92 (102)
T 1x4d_A 82 KPVRVHLSQKY 92 (102)
T ss_dssp EECEEEEECCC
T ss_pred cEEEEEECCCC
Confidence 99999999864
No 182
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=2.9e-15 Score=128.04 Aligned_cols=81 Identities=35% Similarity=0.544 Sum_probs=73.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecC-CCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP-HMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~-~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
....++|||+|||+++++++|+++|+.| | |..|.|+.+. .+|.++|||||+|.+.++|..|| .++ ..|.|+.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGL----N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSS----C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 4567999999999999999999999999 9 9999999998 68999999999999999999999 666 9999999
Q ss_pred EEEEeeecC
Q 008928 411 LRLSHAQQN 419 (548)
Q Consensus 411 I~V~~Ak~~ 419 (548)
|.|.|+.+.
T Consensus 90 l~V~~a~~~ 98 (100)
T 2j76_E 90 IRVDVADQA 98 (100)
T ss_dssp CCCEECCCS
T ss_pred EEEEeccCC
Confidence 999999864
No 183
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=120.51 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=69.1
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++|+++|+.+|+.||.|..|.|+ ++||||+|.+.++|..||
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------------------------~~~afV~f~~~~~a~~A~ 60 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------------------------KDYAFVHMEKEADAKAAI 60 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999999999982 369999999999999999
Q ss_pred H-hcceeecCceeEeecCCCcc
Q 008928 302 A-FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~-lng~~~~gr~I~V~~a~~~~ 322 (548)
. ||+..|.|+.|.|.++.+..
T Consensus 61 ~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 61 AQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp HHHTTCEETTEECEEEESCCCC
T ss_pred HHhCCCEECCcEEEEEECCCCC
Confidence 4 99999999999999997653
No 184
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.56 E-value=1.8e-15 Score=126.18 Aligned_cols=79 Identities=22% Similarity=0.439 Sum_probs=72.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEe
Q 008928 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSH 415 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~ 415 (548)
++|||+|||+.+++++|+++|+.| |.|..|.|+.+..+|.++|||||+|.+.+ |..|+..++ ..|.|+.|.|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF----GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH----TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc----CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 589999999999999999999999 89999999999999999999999999999 999999888 999999999999
Q ss_pred eecCC
Q 008928 416 AQQNC 420 (548)
Q Consensus 416 Ak~~~ 420 (548)
|.+..
T Consensus 77 a~~~~ 81 (90)
T 2ki2_A 77 ANPKK 81 (90)
T ss_dssp C----
T ss_pred cCCCC
Confidence 98764
No 185
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=123.90 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=72.8
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++|+++|.++|+.||.|..|.|+.+ ++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-------------------~g~~~g~afV~f~~~~~A~~A~ 72 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-------------------GGRSKGFGFVCFSSPEEATKAV 72 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-------------------SSSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-------------------CCCcCEEEEEEECCHHHHHHHH
Confidence 345689999999999999999999999999999999553 2346799999999999999999
Q ss_pred H-hcceeecCceeEeecCCCcc
Q 008928 302 A-FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~-lng~~~~gr~I~V~~a~~~~ 322 (548)
. ||+..|.|+.|.|.++.+..
T Consensus 73 ~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 73 TEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp HHHTTCBSSSSBCEEEECSSCC
T ss_pred HHhCCCEeCCcEEEEEEecccc
Confidence 5 99999999999999997654
No 186
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.4e-14 Score=120.78 Aligned_cols=76 Identities=24% Similarity=0.381 Sum_probs=69.2
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhc--CCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKF--GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~f--G~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~ 299 (548)
....++|||+|||+++|+++|+.+|+.| |.|..|.+ .+|||||+|.+.++|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~-------------------------~~g~afV~f~~~~~A~~ 66 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-------------------------IRDYAFVHFSNREDAVE 66 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE-------------------------CSSEEEEEESSHHHHHH
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-------------------------eCCeEEEEeCCHHHHHH
Confidence 3456899999999999999999999999 99998887 45899999999999999
Q ss_pred HHH-hcceeecCceeEeecCCCcc
Q 008928 300 ALA-FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 300 Al~-lng~~~~gr~I~V~~a~~~~ 322 (548)
||. ||+..|.|+.|.|.++.+..
T Consensus 67 A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 67 AMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp HHHHHSSEEETTEEEEEECCCCCC
T ss_pred HHHHhCCCEeCCcEEEEEECCCCC
Confidence 995 99999999999999997654
No 187
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.56 E-value=8.9e-15 Score=128.26 Aligned_cols=81 Identities=20% Similarity=0.379 Sum_probs=71.5
Q ss_pred CCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 221 ~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
+....++|||+|||+++++++|+++|+.||.|..|.|+.++ .++.++|||||+|.+.++|..|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-----------------~~g~~~g~afV~f~~~~~A~~A 98 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDK-----------------QTSLSKCFGFVSFDNPDSAQVA 98 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCS-----------------SSSCCCCEEEEEEESSHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC-----------------CCCCcCcEEEEEECCHHHHHHH
Confidence 34456899999999999999999999999999999995543 1345789999999999999999
Q ss_pred H-HhcceeecCceeEeecC
Q 008928 301 L-AFNMAVIGGNHIRLDRA 318 (548)
Q Consensus 301 l-~lng~~~~gr~I~V~~a 318 (548)
| .||+..|.|+.|.|.++
T Consensus 99 ~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 99 IKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HHHCCCCEETTEECCEEEC
T ss_pred HHHcCCCEECCEEEEEEec
Confidence 9 59999999999999986
No 188
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.8e-15 Score=127.79 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=70.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC---CccCCeE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN---LKLRDRE 410 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln---~~l~Gr~ 410 (548)
.+.++|||+|||+.+++++|+++|++| |.|..|.|+++ +|||||+|.+.++|..||..++ ..|.|++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~f----G~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHH----CCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 357899999999999999999999999 99999999976 7899999999999999998653 6899999
Q ss_pred EEEEeeecCC
Q 008928 411 LRLSHAQQNC 420 (548)
Q Consensus 411 I~V~~Ak~~~ 420 (548)
|.|.||.++.
T Consensus 84 l~V~~A~~~~ 93 (105)
T 1sjq_A 84 IYIQFSNHKE 93 (105)
T ss_dssp CCBCCCSSSS
T ss_pred EEEEEcCCCC
Confidence 9999998753
No 189
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.7e-14 Score=119.72 Aligned_cols=76 Identities=16% Similarity=0.302 Sum_probs=69.3
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++++++|+++|+.||.|..|.| .++||||+|.+.++|..|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~-------------------------~~~~afV~f~~~~~a~~A~ 61 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDI-------------------------VKDYAFVHMERAEDAVEAI 61 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEE-------------------------CSSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-------------------------ECCEEEEEECCHHHHHHHH
Confidence 345689999999999999999999999999999998 2369999999999999999
Q ss_pred -HhcceeecCceeEeecCCCcc
Q 008928 302 -AFNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 -~lng~~~~gr~I~V~~a~~~~ 322 (548)
.||+..|.|+.|.|.++.+..
T Consensus 62 ~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 62 RGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp HHHTTEEETTEEEEEEESSCCC
T ss_pred HHhCCCeeCCcEEEEEEccCCC
Confidence 599999999999999997653
No 190
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.55 E-value=1.3e-14 Score=128.29 Aligned_cols=80 Identities=25% Similarity=0.366 Sum_probs=72.6
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHhc
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (548)
.++|||+|||+++|+++|.++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..||.||
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~~l~ 98 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKF-----------------SGHPKGYAYIEFAERNSVDAAVAMD 98 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECT-----------------TSSCEEEEEEEESSHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----------------CCCcccEEEEEECCHHHHHHHHhcC
Confidence 58999999999999999999999999999999976542 3457899999999999999999999
Q ss_pred ceeecCceeEeecCCCc
Q 008928 305 MAVIGGNHIRLDRACPP 321 (548)
Q Consensus 305 g~~~~gr~I~V~~a~~~ 321 (548)
+..|.|+.|.|.++.+.
T Consensus 99 g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 99 ETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp TCEETTEECEEEESSCC
T ss_pred CCeECCeEEEEEECCCC
Confidence 99999999999998754
No 191
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=1.8e-15 Score=121.70 Aligned_cols=75 Identities=21% Similarity=0.435 Sum_probs=71.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEEee
Q 008928 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHA 416 (548)
Q Consensus 338 tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~A 416 (548)
+|||+|||+.+++++|+++|+.| |.|..|.|+.++.+|.++|||||+|.+.++|..||..++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF----GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH----SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 59999999999999999999999 8999999999999999999999999999999999998669999999999885
No 192
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=129.28 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=75.9
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008928 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
.....++|||+|||+.+++++|+++|..| |.|..|.|+.++.++.++|||||+|.+.++|..||..++ ..|.|+.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 134 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhc----CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34567999999999999999999999999 899999999999999999999999999999999999888 9999999
Q ss_pred EEEEee
Q 008928 411 LRLSHA 416 (548)
Q Consensus 411 I~V~~A 416 (548)
|+|.||
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999986
No 193
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.55 E-value=1.7e-15 Score=138.21 Aligned_cols=122 Identities=17% Similarity=0.197 Sum_probs=72.3
Q ss_pred ceEEEEecCHHHHHHHHHhcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCC
Q 008928 285 VHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLE 364 (548)
Q Consensus 285 G~AFV~F~s~e~A~~Al~lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~ 364 (548)
|+||.+|..++.+..++..-..++.|...--..... .........++|||+|||+++++++|+++|..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g~~-------~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~---- 70 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSGDS-------EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPL---- 70 (139)
T ss_dssp --------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSC----
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCCCc-------ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc----
Confidence 678888888887766663222223333221111100 001123456899999999999999999999999
Q ss_pred CCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeecCC
Q 008928 365 SSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQNC 420 (548)
Q Consensus 365 G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~~ 420 (548)
| |..|.|+.|.. |.++|||||+|.+.++|..|| .++ ..|.|+.|.|.++.+..
T Consensus 71 G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 71 N-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp C-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred C-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 8 67999999975 999999999999999999999 555 99999999999987653
No 194
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3e-14 Score=124.13 Aligned_cols=82 Identities=16% Similarity=0.330 Sum_probs=75.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-Ccc-----
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKL----- 406 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l----- 406 (548)
....++|||+|||+.+++++|+++|..| |.|..|.|+.+. ++.++|||||+|.+.++|..||..|+ ..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~ 96 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPF----GQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG 96 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc
Confidence 3457899999999999999999999999 899999999997 89999999999999999999999777 777
Q ss_pred ---CCeEEEEEeeecC
Q 008928 407 ---RDRELRLSHAQQN 419 (548)
Q Consensus 407 ---~Gr~I~V~~Ak~~ 419 (548)
.+++|.|.|+.+.
T Consensus 97 ~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 97 VSAPTEPLLCKFSGPS 112 (114)
T ss_dssp SCCCSSCBEEEECCCS
T ss_pred ccCCCCceeEEccCCC
Confidence 6888999999864
No 195
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=124.14 Aligned_cols=77 Identities=13% Similarity=0.086 Sum_probs=69.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-C--ccCCe
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-L--KLRDR 409 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~--~l~Gr 409 (548)
..++++|||+|||+.+++++|+++|++| |.|.+|.|+++ +|||||+|.+.++|..|+..++ . .|.|+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~f----G~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEF----GPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 4578999999999999999999999999 89999999854 7899999999999999998876 4 48999
Q ss_pred EEEEEeeecC
Q 008928 410 ELRLSHAQQN 419 (548)
Q Consensus 410 ~I~V~~Ak~~ 419 (548)
+|.|.|++.+
T Consensus 88 ~i~V~~S~~k 97 (100)
T 3r27_A 88 PAFVNYSTSQ 97 (100)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecccc
Confidence 9999999764
No 196
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=119.76 Aligned_cols=75 Identities=16% Similarity=0.340 Sum_probs=69.0
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...++|||+|||+++++++|+++|+.||.|..|.|+ +|||||+|.+.++|..||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~g~afV~f~~~~~A~~A~~ 60 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------------------------KNYGFVHIEDKTAAEDAIR 60 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------------------------TTEEEEEESSHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999982 389999999999999999
Q ss_pred HhcceeecCceeEeecCCCcc
Q 008928 302 AFNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~~ 322 (548)
.||+..|.|+.|.|.++.+..
T Consensus 61 ~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 61 NLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp HHTTCBCSSCBCEEECSSCCC
T ss_pred HhcCCccCCcEEEEEECCCCC
Confidence 699999999999999997654
No 197
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.7e-15 Score=128.76 Aligned_cols=85 Identities=18% Similarity=0.243 Sum_probs=72.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
..+.++|||+|||+.+++++|+++|..| |.|..|.+..+..++.++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARF----QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHH----HHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3467899999999999999999999999 788443333332378899999999999999999999887 99999999
Q ss_pred EEEeeecCCC
Q 008928 412 RLSHAQQNCT 421 (548)
Q Consensus 412 ~V~~Ak~~~~ 421 (548)
.|.|+.+...
T Consensus 98 ~v~~a~~~~~ 107 (115)
T 2cpx_A 98 VIEFGKNKKQ 107 (115)
T ss_dssp EEEECCCCSC
T ss_pred EEEEccCCCC
Confidence 9999987643
No 198
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.1e-14 Score=118.94 Aligned_cols=77 Identities=23% Similarity=0.382 Sum_probs=70.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
..+.++|||+|||+++++++|+++|+.| |.|..|.|+ +|||||+|.+.++|..||..++ ..|.|+.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 72 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQY----GKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNI 72 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTS----SCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEE
Confidence 4467999999999999999999999999 899999987 5799999999999999998887 89999999
Q ss_pred EEEeeecCCC
Q 008928 412 RLSHAQQNCT 421 (548)
Q Consensus 412 ~V~~Ak~~~~ 421 (548)
.|.|+.+...
T Consensus 73 ~v~~a~~~~~ 82 (90)
T 2dnq_A 73 NVEASKNKSK 82 (90)
T ss_dssp EEECSSCCCC
T ss_pred EEEECCCCCC
Confidence 9999987643
No 199
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=124.21 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=67.5
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
..+++|||+|||+++|+++|.++|++||.|.+|.|+. .+|||||+|.+.++|..|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----------------------~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----------------------KKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999999999999999842 4589999999999999999
Q ss_pred Hhccee--ecCceeEeecCCCc
Q 008928 302 AFNMAV--IGGNHIRLDRACPP 321 (548)
Q Consensus 302 ~lng~~--~~gr~I~V~~a~~~ 321 (548)
.|++.. |.|+.|.|.++...
T Consensus 76 ~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 76 YAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp HHHHSCEEETTEEEEEEECSCS
T ss_pred HhcCCCceeCCcEEEEEecccc
Confidence 588764 78999999998653
No 200
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=124.03 Aligned_cols=78 Identities=18% Similarity=0.266 Sum_probs=70.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC---CccCCe
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN---LKLRDR 409 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln---~~l~Gr 409 (548)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+.+ +|||||+|.+.++|..|+..++ ..|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f----G~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPF----GKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence 4567899999999999999999999999 89999998865 7899999999999999998653 779999
Q ss_pred EEEEEeeecCC
Q 008928 410 ELRLSHAQQNC 420 (548)
Q Consensus 410 ~I~V~~Ak~~~ 420 (548)
+|.|.|+.+..
T Consensus 82 ~l~V~~a~~~~ 92 (101)
T 2cq1_A 82 PIYIQYSNHKE 92 (101)
T ss_dssp ECEEEECSCSS
T ss_pred EEEEEEcCccc
Confidence 99999998653
No 201
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=125.74 Aligned_cols=75 Identities=19% Similarity=0.256 Sum_probs=66.8
Q ss_pred cccEEEEcCCCC-CCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 224 LLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 224 ~~rtVfVgNLP~-~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
..++|||+|||+ ++|+++|..+|++||.|.+|+|+. .+|||||+|.+.++|..||
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-----------------------KINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-----------------------SSSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 468999999999 999999999999999999999843 3489999999999999999
Q ss_pred Hhcc--eeecCceeEeecCCCc
Q 008928 302 AFNM--AVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 ~lng--~~~~gr~I~V~~a~~~ 321 (548)
.||+ ..|.|++|.|.++...
T Consensus 71 ~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 71 YYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp HHHHSCCEETTEECEEEEECCC
T ss_pred HHcCCCceECCcEEEEEECCCC
Confidence 5775 4599999999999754
No 202
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=129.48 Aligned_cols=86 Identities=24% Similarity=0.356 Sum_probs=75.4
Q ss_pred cCCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHH
Q 008928 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (548)
Q Consensus 220 ~~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~ 299 (548)
.+....++|||+|||+++++++|..+|+.||.|..|.|+.++. ++.++|||||+|.+.++|..
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~ 99 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE-----------------TRQSRGYGFVKFQSGSSAQQ 99 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT-----------------TTEEEEEEEEEESSHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----------------CCCcceEEEEEECCHHHHHH
Confidence 3445578999999999999999999999999999999976542 24477999999999999999
Q ss_pred HHH-hcceeecCceeEeecCCCcc
Q 008928 300 ALA-FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 300 Al~-lng~~~~gr~I~V~~a~~~~ 322 (548)
||. ||+..|.|+.|.|.++.+..
T Consensus 100 A~~~l~g~~~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 100 AIAGLNGFNILNKRLKVALAASGH 123 (139)
T ss_dssp HHHHTTTEECSSCEEEEEESSCCC
T ss_pred HHHHhCCCEECCeEEEEEECCCCC
Confidence 995 99999999999999997653
No 203
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=3.7e-15 Score=119.91 Aligned_cols=75 Identities=23% Similarity=0.377 Sum_probs=67.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHhcce
Q 008928 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMA 306 (548)
Q Consensus 227 tVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~lng~ 306 (548)
+|||+|||+++++++|.++|+.||.|..|.|+.++ .++.++|||||+|.+.++|..||.+++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~Ai~~~~~ 63 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN-----------------KTNKRRGFCFITFKEEEPVKKIMEKKYH 63 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSC-----------------CCSSSCCCEEEECSSSHHHHHHHTTSSC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-----------------CCCCcCCEEEEEECCHHHHHHHHHhCCC
Confidence 59999999999999999999999999999885433 1345789999999999999999988999
Q ss_pred eecCceeEeecC
Q 008928 307 VIGGNHIRLDRA 318 (548)
Q Consensus 307 ~~~gr~I~V~~a 318 (548)
.|.|+.|.|.++
T Consensus 64 ~~~g~~l~v~~a 75 (75)
T 1iqt_A 64 NVGLSKCEIKVA 75 (75)
T ss_dssp CBTTBCCCEEEC
T ss_pred eECCEEEEEEEC
Confidence 999999999864
No 204
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.55 E-value=1.3e-14 Score=130.25 Aligned_cols=84 Identities=21% Similarity=0.222 Sum_probs=73.8
Q ss_pred CCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 221 ~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|+.|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----------------tg~~~G~afV~F~~~~~A~~A 104 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ-----------------SRRSRGFAFVYFENVDDAKEA 104 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSS-----------------SSCCCCEEEEEESCHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCccceEEEEEECCHHHHHHH
Confidence 344568999999999999999999999999999999965442 345779999999999999999
Q ss_pred HH-hcceeecCceeEeecCCCc
Q 008928 301 LA-FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 301 l~-lng~~~~gr~I~V~~a~~~ 321 (548)
|. ||+..|.|+.|.|.++.+.
T Consensus 105 i~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 105 KERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp HHHHTTCCSSSSCCEESCCSSS
T ss_pred HHHhCCCEECCEEEEEEEecCC
Confidence 95 9999999999999998754
No 205
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.9e-15 Score=121.72 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=70.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (548)
..++|||+|||+++++++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..|+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT-----------------TNKCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSS-----------------SCSCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCCcCcEEEEEECCHHHHHHHHHH
Confidence 458999999999999999999999999999999965431 34578999999999999999995
Q ss_pred hcceeecCceeEeecCC
Q 008928 303 FNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~ 319 (548)
||+..|.|+.|.|.++.
T Consensus 67 l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 67 LKASGVQAQMAKQSGPS 83 (85)
T ss_dssp HHHHTCCEESCCSSCCC
T ss_pred hcCCeEeeEEEeecCCC
Confidence 99999999999988763
No 206
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=126.65 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=69.3
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHhc
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (548)
.++|||+|||+++|+++|+++|+.| .|..|.|+.+. .|+++|||||+|.+.++|++||.+|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~------------------~g~~~G~afV~F~~~~~a~~Al~~~ 76 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH------------------VGRNNGNGLVKFLSPQDTFEALKRN 76 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT------------------TCCCCSEEEEECSSHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC------------------CCCCCeEEEEEECCHHHHHHHHhcC
Confidence 4799999999999999999999999 79999995543 2457899999999999999999999
Q ss_pred ceeecCceeEeecCCC
Q 008928 305 MAVIGGNHIRLDRACP 320 (548)
Q Consensus 305 g~~~~gr~I~V~~a~~ 320 (548)
+..|.|+.|.|..+..
T Consensus 77 ~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 77 RMLMIQRYVEVSPATE 92 (109)
T ss_dssp TEEETTEEEEEEECCH
T ss_pred CCeECCeEEEEEECCc
Confidence 9999999999988753
No 207
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.54 E-value=4.6e-15 Score=128.43 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=71.8
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCC---eeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGE---IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~---I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~ 298 (548)
....++|||+|||+++|+++|+++|+.||. |..|.|+.+. .|.++|||||+|.+.++|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~------------------~g~~~G~afV~F~~~~~a~ 69 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR------------------DGKRRGDALIEMESEQDVQ 69 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT------------------TSTTCSEEEEEBSSHHHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC------------------CCCEeeEEEEEECCHHHHH
Confidence 345689999999999999999999999998 8899985433 2457899999999999999
Q ss_pred HHHHhcceeecCceeEeecCCC
Q 008928 299 AALAFNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 299 ~Al~lng~~~~gr~I~V~~a~~ 320 (548)
.||.+|+..|.|+.|.|.++.+
T Consensus 70 ~Al~~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 70 KALEKHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp HHHTTTTCCSSSSCCCCEECCH
T ss_pred HHHHhCcceeCCeEEEEEECCH
Confidence 9999999999999999999864
No 208
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=125.56 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=71.2
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||.++++++|.++|+.||.|..|.|+.+. +.++|||||+|.+.++|..|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-------------------~~~kg~afV~f~~~~~A~~Ai 86 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-------------------RGSKGFGFVTFENSADADRAR 86 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT-------------------TBCTTEEEEECCCSHHHHHHH
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC-------------------CCCceEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999999999995432 126799999999999999999
Q ss_pred H-hcceeecCceeEeecCCC
Q 008928 302 A-FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 302 ~-lng~~~~gr~I~V~~a~~ 320 (548)
. |||..|.|+.|.|.++.+
T Consensus 87 ~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 87 EKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp HHHTTCEETTEECEEEECCC
T ss_pred HHcCCCEECCEEEEEEECCC
Confidence 5 999999999999999864
No 209
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=134.55 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=71.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcC--CeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG--EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG--~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
..++|||+|||+++|+++|.++|+.|| .|.+|.|+.+.. +|.++|||||+|.+.++|..||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~-----------------tg~skGfaFV~f~~~~~A~~Ai 116 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRA-----------------NGQSKGYAEVVVASENSVHKLL 116 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTT-----------------TCCEEEEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCC-----------------CCccceEEEEEECCHHHHHHHH
Confidence 458999999999999999999999999 999999976542 3567899999999999999999
Q ss_pred -HhcceeecCceeEeecCCC
Q 008928 302 -AFNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 302 -~lng~~~~gr~I~V~~a~~ 320 (548)
.|||..|.|+.|.|.++.+
T Consensus 117 ~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 117 ELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp HHSTTCEETTEECEEEECCH
T ss_pred HHcCCCEECCeEeEEEEcCC
Confidence 5899999999999999864
No 210
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.54 E-value=9.3e-15 Score=132.73 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=71.9
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCC---eeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGE---IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~---I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~ 299 (548)
...++|||+|||+++|+++|+++|+.||. |..|+|+.+. .|.++|||||+|.+.++|+.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~------------------~g~srG~aFV~F~~~e~a~~ 103 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR------------------EGRQSGEAFVELGSEDDVKM 103 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECS------------------SSCEEEEEEEECSSHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECC------------------CCCCCeEEEEEECCHHHHHH
Confidence 44689999999999999999999999999 8899996654 24578999999999999999
Q ss_pred HHHhcceeecCceeEeecCCC
Q 008928 300 ALAFNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 300 Al~lng~~~~gr~I~V~~a~~ 320 (548)
||.+|+..|.|+.|.|.++.+
T Consensus 104 Al~~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 104 ALKKDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp HHTTTEEESSSSEEEEEECCH
T ss_pred HHhcCCCEECCEEEEEEECCh
Confidence 999999999999999999753
No 211
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.54 E-value=9.1e-15 Score=129.07 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=74.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCC---eEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCe
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS---VEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDR 409 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~---I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr 409 (548)
....++|||+|||+++++++|+++|..| |. |..|+|+.+.. |.++|||||+|.+.++|..||.+.+..|.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr 88 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDC----TIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHR 88 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTS----CBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHc----CCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCe
Confidence 3457899999999999999999999999 77 89999999976 9999999999999999999999434999999
Q ss_pred EEEEEeeecC
Q 008928 410 ELRLSHAQQN 419 (548)
Q Consensus 410 ~I~V~~Ak~~ 419 (548)
.|.|.++...
T Consensus 89 ~i~V~~a~~~ 98 (118)
T 2db1_A 89 YIEVFKSHRT 98 (118)
T ss_dssp EEEEEEECHH
T ss_pred EEEEEECCHH
Confidence 9999999754
No 212
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.54 E-value=6e-15 Score=126.03 Aligned_cols=82 Identities=29% Similarity=0.402 Sum_probs=70.4
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++++++|.++|+.|| |.+|.|+.+.. .+|.++|||||+|.+.++|..||.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~----------------~~g~~~g~afV~f~~~~~a~~Ai~ 79 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS----------------NPERLKGFGYAEFEDLDSLLSALS 79 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTT----------------TTCCCCSCEEEEECCHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCC----------------cCCccCeEEEEEECCHHHHHHHHh
Confidence 4468999999999999999999999999 99999854321 135578999999999999999999
Q ss_pred hcceeecCceeEeecCCCc
Q 008928 303 FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~ 321 (548)
||+..|.|+.|.|.++.+.
T Consensus 80 l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 80 LNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp TTTCCBTTBCCCCEECCCS
T ss_pred cCCCEECCeEEEEEeccCC
Confidence 9999999999999998653
No 213
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=122.00 Aligned_cols=78 Identities=18% Similarity=0.379 Sum_probs=68.7
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++++++|+.+|+.||.|. +.+++. .++|||||+|.+.++|..||
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---------------------~~~g~afV~f~~~~~a~~A~ 73 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---------------------GPRRRAFLHYPDSAAAQQAV 73 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---------------------TTTTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---------------------CCCcEEEEEECCHHHHHHHH
Confidence 34468999999999999999999999999996 666432 26799999999999999999
Q ss_pred -HhcceeecCceeEeecCCCc
Q 008928 302 -AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 -~lng~~~~gr~I~V~~a~~~ 321 (548)
.||+..|.|+.|.|.++.+.
T Consensus 74 ~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 74 SCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp HHHTTCCSSSSCCEEEECCCC
T ss_pred HHhCCCEECCcEEEEEEcCCC
Confidence 69999999999999998754
No 214
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.54 E-value=1.6e-14 Score=128.14 Aligned_cols=83 Identities=14% Similarity=0.216 Sum_probs=72.8
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++|+++|..+|+.||.|..|.|+.+. .++.++|||||+|.+.++|..||
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~A~ 81 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR-----------------RTGYLKGYTLVEYETYKEAQAAM 81 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT-----------------TTSSBCSCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-----------------CCCccceEEEEEECCHHHHHHHH
Confidence 3446899999999999999999999999999999985543 13457899999999999999999
Q ss_pred -HhcceeecCceeEeecCCCc
Q 008928 302 -AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 -~lng~~~~gr~I~V~~a~~~ 321 (548)
.||+..|.|+.|.|.++.+.
T Consensus 82 ~~l~g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 82 EGLNGQDLMGQPISVDWCFVR 102 (126)
T ss_dssp HHHTTCBSSSSBCEEEESEES
T ss_pred HHhCCCeeCCeEEEEEEecCC
Confidence 59999999999999998643
No 215
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=122.19 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=70.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEe
Q 008928 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSH 415 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~ 415 (548)
++|||+|||+.+++++|+++|+.| |.|..|.|+.+ ++|||||+|.+.++|..|+..|+ ..|.|+.|.|.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 71 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY----GPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVEL 71 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH----CCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEE
Confidence 479999999999999999999999 89999999987 68999999999999999999877 999999999999
Q ss_pred eecCC
Q 008928 416 AQQNC 420 (548)
Q Consensus 416 Ak~~~ 420 (548)
+.+..
T Consensus 72 a~~~~ 76 (101)
T 2hvz_A 72 STGMP 76 (101)
T ss_dssp SSSCC
T ss_pred ccCCC
Confidence 98764
No 216
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=123.36 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=71.0
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..++|||+|||+++++++|+++|..||.|..+.++.+. .++.++|||||+|.+.++|+.|| .
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~-----------------~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN-----------------EKGMPTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEEC-----------------SSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEEC-----------------CCCCeeeEEEEEECCHHHHHHHHHH
Confidence 45899999999999999999999999999877775543 13457799999999999999999 6
Q ss_pred hcceeecCceeEeecCCCc
Q 008928 303 FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~ 321 (548)
||+..|.|+.|.|.++..+
T Consensus 77 l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 77 LNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp TTTCEETTEECEEEESSCS
T ss_pred hCCCeeCCeEEEEEEcCCC
Confidence 9999999999999998643
No 217
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.8e-14 Score=123.65 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=67.6
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++++++|+++|++||.|..|.|+. .+|||||+|.+.++|..|+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-----------------------FKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999999999999998832 35899999999999999995
Q ss_pred -hcc--eeecCceeEeecCCCcc
Q 008928 303 -FNM--AVIGGNHIRLDRACPPR 322 (548)
Q Consensus 303 -lng--~~~~gr~I~V~~a~~~~ 322 (548)
|++ ..|.|+.|.|.++....
T Consensus 70 ~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 70 FAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp HHHHSCCBSSSSBCEEEECSSSS
T ss_pred HhccCCceECCEEEEEEEccCcc
Confidence 765 45999999999997654
No 218
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2e-14 Score=118.44 Aligned_cols=74 Identities=26% Similarity=0.484 Sum_probs=67.4
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
+...++|||+|||.++++++|.++|+.||.|..|.|+. ++|||||+|.+.++|..|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----------------------~kg~afV~f~~~~~A~~a~ 65 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----------------------RQQCAFIQFATRQAAEVAA 65 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEESSHHHHHHHH
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999999999843 3589999999999999999
Q ss_pred H-h-cceeecCceeEeecC
Q 008928 302 A-F-NMAVIGGNHIRLDRA 318 (548)
Q Consensus 302 ~-l-ng~~~~gr~I~V~~a 318 (548)
. | ++..|.|+.|.|.++
T Consensus 66 ~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 66 EKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp HTTTTTCEETTEECCEEEC
T ss_pred HHhcCCeeECCCEEEEEec
Confidence 5 7 999999999999986
No 219
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.54 E-value=8.9e-15 Score=123.06 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=69.5
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-h
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~-l 303 (548)
.++|||+|||+++++++|+++|..||.|..+.++.+. .++.++|||||+|.+.++|..||. |
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~-----------------~~g~~~g~afV~f~~~~~a~~Ai~~l 77 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN-----------------EKGMPTGEAMVAFESRDEATAAVIDL 77 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC-----------------TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC-----------------CCCCEeeEEEEEECCHHHHHHHHHHh
Confidence 4899999999999999999999999999888776543 134577999999999999999994 9
Q ss_pred cceeecCceeEeecCC
Q 008928 304 NMAVIGGNHIRLDRAC 319 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~ 319 (548)
|+..|.|+.|.|.++.
T Consensus 78 ~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 78 NDRPIGSRKVKLSGPS 93 (95)
T ss_dssp TTCEETTEECEEECCC
T ss_pred CCCeECCcEEEEEecc
Confidence 9999999999999875
No 220
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=4.7e-14 Score=122.16 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=69.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC---CccCCe
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN---LKLRDR 409 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln---~~l~Gr 409 (548)
..+.++|||+|||+.+++++|+++|++| |.|..|.|+.+ +|||||+|.+.++|..|+..++ ..|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f----G~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKF----GTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTT----SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 4567899999999999999999999999 89999998864 7899999999999999998764 569999
Q ss_pred EEEEEeeecC
Q 008928 410 ELRLSHAQQN 419 (548)
Q Consensus 410 ~I~V~~Ak~~ 419 (548)
+|.|.|+.+.
T Consensus 82 ~l~V~~a~~~ 91 (104)
T 1wex_A 82 QAFFNYSTSK 91 (104)
T ss_dssp BCEEEECSSS
T ss_pred EEEEEEccCc
Confidence 9999999865
No 221
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=1.6e-14 Score=121.03 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=66.1
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
+.-|||+||++.+|+++|+++|.+||+|.++.|.. ++|||||+|.+.++|.+|+ .|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----------------------~kGfaFVey~~~~eA~~Ai~~L 63 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----------------------NQGIALCKYTTREEANKAQMAL 63 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----------------------CCcEEEEEECCHHHHHHHHHHh
Confidence 46799999999999999999999999999999832 5699999999999999999 69
Q ss_pred cceeecCceeEeecC
Q 008928 304 NMAVIGGNHIRLDRA 318 (548)
Q Consensus 304 ng~~~~gr~I~V~~a 318 (548)
|+..|.|+.|+|..+
T Consensus 64 n~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 64 NNCVLANTTIFAESP 78 (89)
T ss_dssp TTEEETTEEEEEECC
T ss_pred cCCEECCcEEEEEEC
Confidence 999999999999997
No 222
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4e-14 Score=121.99 Aligned_cols=77 Identities=13% Similarity=0.258 Sum_probs=68.0
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++++++|+.+|+.||.|..|.|+. .+|||||+|.+.++|..|+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-----------------------GKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999998842 35899999999999999994
Q ss_pred -h--cceeecCceeEeecCCCcc
Q 008928 303 -F--NMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 303 -l--ng~~~~gr~I~V~~a~~~~ 322 (548)
| ++..|.|+.|.|.++.+..
T Consensus 70 ~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 70 YYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp HHHHSCCEETTEECEEEECSCSS
T ss_pred HhccCCceECCcEEEEEEcCccc
Confidence 5 5678999999999997643
No 223
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3e-14 Score=121.13 Aligned_cols=77 Identities=26% Similarity=0.433 Sum_probs=69.9
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+.+++++|+.+|+.||.|..|.|+. ++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-----------------------~kg~afV~f~~~~~a~~a~ 68 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----------------------DKGFGFIRLETRTLAEIAK 68 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-----------------------TTTEEEEECSSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-----------------------CCCEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999999999832 4589999999999999999
Q ss_pred -HhcceeecCceeEeecCCCc
Q 008928 302 -AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 -~lng~~~~gr~I~V~~a~~~ 321 (548)
.||+..|.|+.|.|.++.+.
T Consensus 69 ~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 69 VELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp HHHTTCCBTTBCCEEEESSCC
T ss_pred HHhCCCEeCCceEEEEEcCCC
Confidence 69999999999999999764
No 224
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.53 E-value=2.4e-14 Score=124.19 Aligned_cols=93 Identities=25% Similarity=0.374 Sum_probs=77.1
Q ss_pred cCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCC-CCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEE
Q 008928 309 GGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYV 387 (548)
Q Consensus 309 ~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~-~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV 387 (548)
.|..|.|..+..... .......++|||+|||+. +++++|+++|..| |.|..|.| ++|||||
T Consensus 6 ~g~~~~~~~s~~~~~------~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~----G~v~~v~i--------~~g~afV 67 (110)
T 1wf1_A 6 SGMSLKLQASNVTNK------NDPKSINSRVFIGNLNTALVKKSDVETIFSKY----GRVAGCSV--------HKGYAFV 67 (110)
T ss_dssp CSCCCCCCCCCSCCS------CCCTTCSSEEEECSCCCSSCCHHHHHHHHGGG----SCCSEEEE--------ETTEEEE
T ss_pred CCcccccccCCCCCC------CCCCCCCcEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEE--------eCCEEEE
Confidence 466677766653221 112334689999999999 9999999999999 89999988 4789999
Q ss_pred EECCHHHHHHHHHHcC-CccCCeEEEEEeeecC
Q 008928 388 LFKTREAANLVIKRRN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 388 ~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~~ 419 (548)
+|.+.++|..||..|+ ..|.|+.|.|.|+.+.
T Consensus 68 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 68 QYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp ECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred EECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 9999999999998877 9999999999999864
No 225
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.1e-14 Score=122.41 Aligned_cols=74 Identities=19% Similarity=0.331 Sum_probs=68.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..++|||+|||.++++++|+.+|+.||.|.+|.|.. ++|||||+|.+.++|..|+ .
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----------------------~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----------------------EKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 458999999999999999999999999999999841 5699999999999999999 6
Q ss_pred hcceeecCceeEeecCCC
Q 008928 303 FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~ 320 (548)
||+..|.|+.|.|.++.+
T Consensus 83 l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 83 LANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp HTTCEETTEECCCCBCCC
T ss_pred hCCCeECCeEEEEEeccC
Confidence 999999999999999864
No 226
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.7e-14 Score=122.82 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=72.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
...++|||+|||+.+++++|+.+|..| |.|..|.|+.+ +|||||+|.+.++|..||..|+ ..|.|+.|.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPF----GQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 92 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHH----SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 356899999999999999999999999 89999999877 7899999999999999998877 999999999
Q ss_pred EEeeecCCC
Q 008928 413 LSHAQQNCT 421 (548)
Q Consensus 413 V~~Ak~~~~ 421 (548)
|.|+.+...
T Consensus 93 v~~a~~~~~ 101 (109)
T 1x4g_A 93 CYWGKESPD 101 (109)
T ss_dssp EECCCCCCS
T ss_pred EEecCCCCC
Confidence 999987643
No 227
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.53 E-value=3.4e-14 Score=120.94 Aligned_cols=74 Identities=27% Similarity=0.501 Sum_probs=68.2
Q ss_pred CCcccEEEEcCCCC-CCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 222 GKLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 222 ~~~~rtVfVgNLP~-~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
....++|||+|||+ ++++++|..+|+.||.|..|.| .+|||||+|.+.++|..|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-------------------------~~g~afV~f~~~~~A~~A 73 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------------------------KNAFGFIQFDNPQSVRDA 73 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-------------------------CSSEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------------------------eCCEEEEEECCHHHHHHH
Confidence 34568999999998 9999999999999999999998 358999999999999999
Q ss_pred HH-hcceeecCceeEeecCCC
Q 008928 301 LA-FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 301 l~-lng~~~~gr~I~V~~a~~ 320 (548)
+. |||..|.|+.|.|.++..
T Consensus 74 i~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 74 IEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp HHHHTTSEETTEECEEEECCC
T ss_pred HHHcCCCEECCEEEEEEecCC
Confidence 95 999999999999999864
No 228
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.5e-14 Score=126.08 Aligned_cols=85 Identities=20% Similarity=0.307 Sum_probs=72.3
Q ss_pred cccEEEEcCCCCCCcHHHHH---HHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 224 LLRTIFVGNLPLKVKKKTLI---KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~---~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
..++|||+|||+++++++|. ++|+.||.|..|.|+.+..+ +. .+.++|||||+|.+.++|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~--~~------------~~~~~G~afV~f~~~~~A~~A 79 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSY--AG------------SQGPSASAYVTYIRSEDALRA 79 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSC--CS------------SSCCCEEEEEEESSHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCc--Cc------------cCCCCeEEEEEECcHHHHHHH
Confidence 35799999999999999999 99999999999999654321 10 123679999999999999999
Q ss_pred HH-hcceeecCceeEeecCCCcc
Q 008928 301 LA-FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 301 l~-lng~~~~gr~I~V~~a~~~~ 322 (548)
|. ||+..|.|+.|.|.++.+..
T Consensus 80 i~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 80 IQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HHHHTTEEETTEEEEEESCCCCS
T ss_pred HHHhCCCEECCEEEEEEeccccc
Confidence 95 89999999999999997643
No 229
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=7.2e-15 Score=118.66 Aligned_cols=75 Identities=19% Similarity=0.354 Sum_probs=66.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-hc
Q 008928 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~-ln 304 (548)
++|||+|||+++++++|.++|+.||.|..|.|+.++. +|.++|||||+|.+.++|..|+. ++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL-----------------TKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCC-----------------SSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCC-----------------CCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 4799999999999999999999999999999965431 34578999999999999999996 66
Q ss_pred ceeecCceeEeecC
Q 008928 305 MAVIGGNHIRLDRA 318 (548)
Q Consensus 305 g~~~~gr~I~V~~a 318 (548)
..|.|+.|.|.++
T Consensus 64 -~~~~g~~l~v~~a 76 (77)
T 1uaw_A 64 -HELDSKTIDPKVA 76 (77)
T ss_dssp -CCCSSCCCEEEEC
T ss_pred -CccCCEEEEEEec
Confidence 9999999999886
No 230
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.53 E-value=4.5e-14 Score=120.98 Aligned_cols=75 Identities=28% Similarity=0.438 Sum_probs=68.7
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++|+++|+++|+.||.|..|.| .+|||||+|.+.++|..||.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~-------------------------~~~~afV~f~~~~~a~~A~~ 63 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK-------------------------LKDYAFIHFDERDGAVKAME 63 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE-------------------------CSSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-------------------------ECCEEEEEeCCHHHHHHHHH
Confidence 34689999999999999999999999999999998 23799999999999999995
Q ss_pred -hcceeecCceeEeecCCCcc
Q 008928 303 -FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~~~~ 322 (548)
||+..|.|+.|.|.++.+..
T Consensus 64 ~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 64 EMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp HHTTEEETTEEEEEEECCCCC
T ss_pred HHCCCccCCCEEEEEEcCCCc
Confidence 99999999999999997654
No 231
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2e-14 Score=127.65 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=71.2
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC---CccCC
Q 008928 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN---LKLRD 408 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln---~~l~G 408 (548)
...+.++|||+|||+++++++|+++|+.| |.|..|.|+.+ +|||||+|.+.++|..|+..++ ..|.|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~f----G~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTT----SCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34567899999999999999999999999 89999999876 7999999999999999998775 57999
Q ss_pred eEEEEEeeecC
Q 008928 409 RELRLSHAQQN 419 (548)
Q Consensus 409 r~I~V~~Ak~~ 419 (548)
++|.|.|+.+.
T Consensus 97 r~l~V~~a~~k 107 (119)
T 2ad9_A 97 QPIYIQFSNHK 107 (119)
T ss_dssp BCCEEEECSSS
T ss_pred eEEEEEEccCC
Confidence 99999999865
No 232
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.6e-15 Score=129.96 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=74.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|..| |.|..|.++.+..+|.++|||||+|.+.++|..||. ++ ..|.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 96 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKL----DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFI 96 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSS----CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEE
Confidence 4456899999999999999999999999 899886677776899999999999999999999999 66 99999999
Q ss_pred EEEeeecC
Q 008928 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|.++.+.
T Consensus 97 ~V~~a~~~ 104 (124)
T 1wel_A 97 QVHPITKK 104 (124)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99999764
No 233
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.53 E-value=3e-14 Score=131.20 Aligned_cols=82 Identities=21% Similarity=0.300 Sum_probs=73.1
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++|+++|.++|+.||.|..|.|+.++. ++.++|||||+|.+.++|..||.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~~A~~Ai~ 99 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM-----------------KKTACGFCFVEYYSRADAENAMR 99 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCccceEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999966542 34577999999999999999995
Q ss_pred -hcceeecCceeEeecCCCc
Q 008928 303 -FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~~~ 321 (548)
||+..|.|+.|.|.++.+.
T Consensus 100 ~l~g~~~~g~~l~V~~a~~~ 119 (156)
T 1h2v_Z 100 YINGTRLDDRIIRTDWDAGF 119 (156)
T ss_dssp HTTTSEETTEECEEEEESCC
T ss_pred HhCCCEECCeEEEEEECCCC
Confidence 9999999999999999754
No 234
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.7e-14 Score=123.53 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=70.2
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++++++|+.+|+.||.|..|.|+.+. ++.++|||||+|.+.++|..||.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS------------------SGTSRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS------------------SSCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC------------------CCCcceEEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999996654 23477999999999999999994
Q ss_pred -hcceee--------cCceeEeecCCC
Q 008928 303 -FNMAVI--------GGNHIRLDRACP 320 (548)
Q Consensus 303 -lng~~~--------~gr~I~V~~a~~ 320 (548)
|||..| .++.|.|.++.+
T Consensus 85 ~l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 85 HFNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp HHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred HhCCCEEcCCccccCCCCceeEEccCC
Confidence 999999 567888888864
No 235
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.6e-14 Score=122.21 Aligned_cols=76 Identities=17% Similarity=0.326 Sum_probs=69.4
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..++|||+|||..+++++|+.+|+.||.|..|.|+. .+|||||+|.+.++|..|| .
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-----------------------EKGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 458999999999999999999999999999999843 2589999999999999999 6
Q ss_pred hcceeecCceeEeecCCCcc
Q 008928 303 FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~~ 322 (548)
||+..|.|+.|.|.++.+..
T Consensus 81 l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 81 VNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp HTTCEETTEECEEECCCCCC
T ss_pred cCCCEECCcEEEEEecCCCC
Confidence 99999999999999997653
No 236
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.52 E-value=1e-14 Score=130.86 Aligned_cols=83 Identities=17% Similarity=0.229 Sum_probs=72.5
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeE--EEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS--VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~s--Vri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~ 299 (548)
....++|||+|||+++|+++|+++|+.||.|.. |+|+.+.. +|.++|||||+|.+. +|..
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~-----------------tg~~rG~aFV~f~~~-~a~~ 81 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQ-----------------TQLNRGFAFIQLSTI-EAAQ 81 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSS-----------------SSSBCSCEEEECCHH-HHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCC-----------------CCCcceEEEEEECCH-HHHH
Confidence 345689999999999999999999999999977 88865442 355789999999999 9999
Q ss_pred HH-Hhcce----eecCceeEeecCCCcc
Q 008928 300 AL-AFNMA----VIGGNHIRLDRACPPR 322 (548)
Q Consensus 300 Al-~lng~----~~~gr~I~V~~a~~~~ 322 (548)
|| .||+. .|.|+.|.|.++.+..
T Consensus 82 Ai~~l~g~~~~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 82 LLQILQALHPPLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp HHHHHTTCCCSCCGGGCCCCCEECCCSC
T ss_pred HHHHhcCCCCCccCCCEEEEEEECCCCC
Confidence 99 69999 9999999999997653
No 237
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.52 E-value=4.2e-14 Score=125.29 Aligned_cols=82 Identities=13% Similarity=0.215 Sum_probs=73.1
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+.+++++|.++|+.||.|..|.|+.+. +|.++|||||+|.+.++|..|+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~------------------~g~~~g~afV~f~~~~~A~~Ai 93 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR------------------SGRSLGTADVHFERRADALKAM 93 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS------------------SSSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC------------------CCCEeeEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999999999996543 2457799999999999999999
Q ss_pred H-hcceeecCceeEeecCCCc
Q 008928 302 A-FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 ~-lng~~~~gr~I~V~~a~~~ 321 (548)
. ||+..|.|+.|.|.++.+.
T Consensus 94 ~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 94 KQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp HHHTTEESSSCEEEEEEECCT
T ss_pred HHcCCCEECCcEEEEEEeCCC
Confidence 5 9999999999999998754
No 238
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.7e-14 Score=125.87 Aligned_cols=77 Identities=18% Similarity=0.357 Sum_probs=68.1
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++|+++|+++|+.||.|.+|.|+. .+|||||+|.+.++|..|+.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-----------------------~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-----------------------GKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-----------------------GGTEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999843 35899999999999999995
Q ss_pred -hc--ceeecCceeEeecCCCcc
Q 008928 303 -FN--MAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 303 -ln--g~~~~gr~I~V~~a~~~~ 322 (548)
|+ +..|.|+.|.|.++.+..
T Consensus 86 ~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 86 YYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp HHHHHCCCBTTBCCEEEECSSSS
T ss_pred HhccCCceECCeEEEEEEccCCC
Confidence 66 468999999999997643
No 239
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.52 E-value=2e-14 Score=126.03 Aligned_cols=79 Identities=20% Similarity=0.118 Sum_probs=69.1
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcC-CeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG-~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
....++|||+|||+++++++|+++|+.|| .|..|.|... .++|||||+|.+.++|+.|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---------------------~~rGfaFV~F~~~e~A~~A 83 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---------------------DFDGTGALEFPSEEILVEA 83 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---------------------SSSCCEEEEESSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---------------------CCCCEEEEEECCHHHHHHH
Confidence 33457999999999999999999999999 8999887321 2669999999999999999
Q ss_pred H-HhcceeecCceeEeecCCCc
Q 008928 301 L-AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 301 l-~lng~~~~gr~I~V~~a~~~ 321 (548)
| .|||..|.|+.|.|.++..+
T Consensus 84 i~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 84 LERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp HHHTTTEEETTEEEEEEESCC-
T ss_pred HHHcCCCEECCeEEEEEECCCC
Confidence 9 59999999999999998643
No 240
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.3e-15 Score=130.42 Aligned_cols=81 Identities=16% Similarity=0.278 Sum_probs=70.0
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++|+++|.++|+.||.|..+.++.+. .+|.++|||||+|.+.++|..||.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~-----------------~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG-----------------PNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC-----------------TTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC-----------------CCCCCCeEEEEEECCHHHHHHHHH
Confidence 345899999999999999999999999999875443322 145578999999999999999999
Q ss_pred hcceeecCceeEeecCCC
Q 008928 303 FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~ 320 (548)
||+..|.|+.|.|.++..
T Consensus 86 ~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 86 RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp SCSBCSTTSCBEEEEECH
T ss_pred hCCCeECCcEEEEEECCH
Confidence 999999999999999864
No 241
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.52 E-value=1.4e-14 Score=142.72 Aligned_cols=81 Identities=14% Similarity=0.256 Sum_probs=75.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCC--CeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G--~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
..++|||+|||+.+++++|+++|..| | .|..|.|++|..++.++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~----G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL----GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT----TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH----CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 45789999999999999999999999 8 99999999999999999999999999999999999888 99999999
Q ss_pred EEEeeecC
Q 008928 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|.|+.+.
T Consensus 143 ~V~~a~~~ 150 (229)
T 3q2s_C 143 VVTPVNKQ 150 (229)
T ss_dssp EEEECCHH
T ss_pred EEEECCCC
Confidence 99999754
No 242
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=126.42 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=67.6
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
..++|||+|||+++++++|+.+|+.||.|..|.|+. ++|||||+|.+.++|..|| .
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~A~~Ai~~ 65 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----------------------GGITAIVEFLEPLEARKAFRH 65 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----------------------SSSCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCCEEEEEeCCHHHHHHHHHH
Confidence 468999999999999999999999999999998731 5589999999999999999 5
Q ss_pred hcceeecCceeEeecCCC
Q 008928 303 FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~ 320 (548)
|||..|.|+.|.|.|+..
T Consensus 66 l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 66 LAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp HTTCBSSSSBCEEEEEET
T ss_pred hCCCEECCeEEEEEECCC
Confidence 999999999999999853
No 243
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=9.1e-15 Score=130.55 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=74.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRL 413 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V 413 (548)
....+|||+|||+++|+++|+++|..|+.+.|.|..|.|+.+ .+|.++|||||+|.+.++|..||...+..|.||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 346899999999999999999999999432234579999999 5899999999999999999999998559999999999
Q ss_pred EeeecC
Q 008928 414 SHAQQN 419 (548)
Q Consensus 414 ~~Ak~~ 419 (548)
..+.+.
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 244
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.52 E-value=3.9e-14 Score=130.33 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=73.2
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...++|||+|||+++++++|.++|+.||.|..|.|+.++ .+|.++|||||+|.+.++|..||
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~~ 130 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR-----------------YTKESRGFAFVRFHDKRDAEDAMD 130 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCS-----------------SCTTSCCEEEEEESBHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC-----------------CCCccceEEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999985543 13557899999999999999999
Q ss_pred HhcceeecCceeEeecCCCc
Q 008928 302 AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~ 321 (548)
.|||..|.|+.|.|.++.+.
T Consensus 131 ~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 131 AMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp HSTTEESSSSEEEEEEECCS
T ss_pred HhCCCEECCeEEEEEECCCC
Confidence 59999999999999999764
No 245
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=7.6e-14 Score=116.98 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=70.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|+.| |.|..|.|+++ ||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEY----GPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTT----SCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 4567999999999999999999999999 89999998743 99999999999999998877 99999999
Q ss_pred EEEeeecCCC
Q 008928 412 RLSHAQQNCT 421 (548)
Q Consensus 412 ~V~~Ak~~~~ 421 (548)
.|.|+.+...
T Consensus 75 ~V~~a~~~~~ 84 (92)
T 2dgt_A 75 HVQLSTSRLR 84 (92)
T ss_dssp EEEESSCCCS
T ss_pred EEEEccCCCC
Confidence 9999987543
No 246
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.52 E-value=4e-14 Score=127.24 Aligned_cols=81 Identities=27% Similarity=0.436 Sum_probs=71.0
Q ss_pred CCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 221 ~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++ .++.++|||||+|.+.++|..|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~A 121 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY-----------------ETEKHRGFAFVEFELAEDAAAA 121 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCT-----------------TTCCCCSEEEEEESCHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecC-----------------CCCCcCcEEEEEECCHHHHHHH
Confidence 34567899999999999999999999999999999985543 1345789999999999999999
Q ss_pred H-HhcceeecCceeEeecC
Q 008928 301 L-AFNMAVIGGNHIRLDRA 318 (548)
Q Consensus 301 l-~lng~~~~gr~I~V~~a 318 (548)
| .||+..|.|+.|.|.++
T Consensus 122 ~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 122 IDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHHSTEEEETTEEEEEEC-
T ss_pred HHHhCCCEECCEEEEEEeC
Confidence 9 59999999999999875
No 247
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.4e-14 Score=120.41 Aligned_cols=80 Identities=26% Similarity=0.306 Sum_probs=68.5
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++|+++|+++|+.||.| .|+.+ .++.++|||||+|.+.++|+.||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~------------------~~g~~~g~afV~f~~~~~A~~A~ 70 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN------------------QNGKSKGYAFIEFASFEDAKEAL 70 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC------------------SSSCBCSEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC------------------CCCCEeeEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999977 34221 13457899999999999999999
Q ss_pred H-hcceeecCceeEeecCCCcc
Q 008928 302 A-FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~-lng~~~~gr~I~V~~a~~~~ 322 (548)
. ||+..|.|+.|.|.++.+..
T Consensus 71 ~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 71 NSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp HHTSSEEETTEEEEEEECSSCC
T ss_pred HHhCCCEeCCeEEEEEEcCCCC
Confidence 5 99999999999999997653
No 248
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3.6e-14 Score=120.15 Aligned_cols=76 Identities=26% Similarity=0.385 Sum_probs=68.6
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++++++|.++|+.||.|..|.|+. .+|||||+|.+.++|+.|+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-----------------------~~g~afV~f~~~~~A~~A~~ 71 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-----------------------GDSFAYIQYESLDAAQAACA 71 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-----------------------SSCCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 3458999999999999999999999999999998832 25899999999999999995
Q ss_pred -hcceeec--CceeEeecCCCc
Q 008928 303 -FNMAVIG--GNHIRLDRACPP 321 (548)
Q Consensus 303 -lng~~~~--gr~I~V~~a~~~ 321 (548)
||+..|. |+.|.|.++.+.
T Consensus 72 ~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 72 KMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp HHTTCBCSSSSCBCEEEECCCC
T ss_pred HHCCCEeCCCCcEEEEEECCCC
Confidence 9999999 999999999764
No 249
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=123.25 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=73.2
Q ss_pred CCccEEEEeCCCCCC------CHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-Ccc
Q 008928 334 DIKKTVFVGNLPFDV------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKL 406 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~------teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l 406 (548)
...++|||+|||+.+ ++++|+.+|+.| |.|..|.|+ ..+|.++|||||+|.+.++|..||..|+ ..|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG----SCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC----CCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 346899999999999 789999999999 899999988 3689999999999999999999999887 999
Q ss_pred CCe-EEEEEeeecC
Q 008928 407 RDR-ELRLSHAQQN 419 (548)
Q Consensus 407 ~Gr-~I~V~~Ak~~ 419 (548)
.|+ .|.|.|+.+.
T Consensus 87 ~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 87 DKQHTFRVNLFTDF 100 (105)
T ss_dssp STTCEEEEECSCCC
T ss_pred CCCceEEEEEcchH
Confidence 998 9999999754
No 250
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=4.7e-15 Score=126.46 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=73.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
...++|||+|||+.+++++|+++|..| |.|.. .++.+..+|.++|||||+|.+.++|..||. ++ ..|.|+.|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 88 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISEL----FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 88 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHH----HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEE
Confidence 357899999999999999999999999 88877 677777889999999999999999999999 76 999999999
Q ss_pred EEeeecCC
Q 008928 413 LSHAQQNC 420 (548)
Q Consensus 413 V~~Ak~~~ 420 (548)
|.|+.++.
T Consensus 89 V~~a~~~~ 96 (101)
T 1fj7_A 89 LEKPKGRD 96 (101)
T ss_dssp EECCSCCC
T ss_pred EEEcCCCC
Confidence 99998753
No 251
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.6e-14 Score=124.14 Aligned_cols=81 Identities=22% Similarity=0.424 Sum_probs=74.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||..+++++|+++|+.| |.|..|.|+.+. +.++|||||+|.+.++|..|+..++ ..|.|+.|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQF----GKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGT----CCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhc----CCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4467899999999999999999999999 899999999985 3489999999999999999999877 99999999
Q ss_pred EEEeeecC
Q 008928 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|.|+.++
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999864
No 252
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=125.85 Aligned_cols=81 Identities=22% Similarity=0.348 Sum_probs=72.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELR 412 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~ 412 (548)
.....+|||+|||+++++++|+++|..| .|..|.|+.|.. |.++|||||+|.+.++|..||.+.+..|+||.|.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-----~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 86 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-----RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVE 86 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-----CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-----CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEE
Confidence 3446899999999999999999999999 588999999965 9999999999999999999995444999999999
Q ss_pred EEeeecC
Q 008928 413 LSHAQQN 419 (548)
Q Consensus 413 V~~Ak~~ 419 (548)
|..+.+.
T Consensus 87 V~~a~~~ 93 (109)
T 2dnn_A 87 VSPATER 93 (109)
T ss_dssp EEECCHH
T ss_pred EEECCcc
Confidence 9988654
No 253
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=5e-14 Score=119.27 Aligned_cols=77 Identities=19% Similarity=0.355 Sum_probs=70.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccC--Ce
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLR--DR 409 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~--Gr 409 (548)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+.+ +|||||+|.+.++|..||..|+ ..|. |+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~ 83 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRF----GSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDR 83 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTT----SCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCc
Confidence 3456899999999999999999999999 89999998754 7899999999999999999877 8899 99
Q ss_pred EEEEEeeecC
Q 008928 410 ELRLSHAQQN 419 (548)
Q Consensus 410 ~I~V~~Ak~~ 419 (548)
.|.|.|+.++
T Consensus 84 ~l~V~~a~~~ 93 (97)
T 1why_A 84 RLRVDFAKSG 93 (97)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEECCCC
Confidence 9999999875
No 254
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.6e-14 Score=121.81 Aligned_cols=82 Identities=21% Similarity=0.320 Sum_probs=70.5
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCC-eeEEEEe-eecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIR-SVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~-I~sVri~-~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
..++|||+|||+++++++|.++|..||. |..|.|+ .+. .+|.++|||||+|.+.++|..||
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~-----------------~~g~~~g~afV~f~~~~~A~~A~ 69 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA-----------------DKMKNRGFAFVEYESHRAAAMAR 69 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSC-----------------TTTTTCCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCC-----------------CCCCcCcEEEEEecCHHHHHHHH
Confidence 4589999999999999999999999998 9999884 211 23457899999999999999999
Q ss_pred H-hc--ceeecCceeEeecCCCcc
Q 008928 302 A-FN--MAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~-ln--g~~~~gr~I~V~~a~~~~ 322 (548)
. |+ +..|.|+.|.|.++.+..
T Consensus 70 ~~l~~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 70 RKLMPGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp TTTTTCCSCBTTBCCEEEESCSSC
T ss_pred HHhhCCCceecCCeEEEEEcCCCC
Confidence 5 85 589999999999997643
No 255
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.4e-13 Score=117.02 Aligned_cols=79 Identities=27% Similarity=0.329 Sum_probs=70.0
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008928 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
.....++|||+|||+.+++++|+++|..|+. |.|..|.++ +|||||+|.+.++|..||..|+ ..|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCC--cceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3456789999999999999999999999954 688888764 5699999999999999999777 9999999
Q ss_pred EEEEeeecCC
Q 008928 411 LRLSHAQQNC 420 (548)
Q Consensus 411 I~V~~Ak~~~ 420 (548)
|.|.|+.+..
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpd_A 81 IEVTLAKPVD 90 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCC
Confidence 9999998754
No 256
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.51 E-value=6.7e-15 Score=122.72 Aligned_cols=78 Identities=22% Similarity=0.371 Sum_probs=68.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhc
Q 008928 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (548)
++|||+|||+++++++|.++|+.||.|..|.|+.++. +|.++|||||+|.+.+ |..|+ .||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------------~~~~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRE-----------------TKKPKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSS-----------------SCCCCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCC-----------------CCCcceEEEEEECCHH-HHHHHHHhC
Confidence 6899999999999999999999999999999955431 3457899999999999 99999 589
Q ss_pred ceeecCceeEeecCCCc
Q 008928 305 MAVIGGNHIRLDRACPP 321 (548)
Q Consensus 305 g~~~~gr~I~V~~a~~~ 321 (548)
+..|.|+.|.|.++.+.
T Consensus 64 g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 64 NTDFMGRTIRVTEANPK 80 (90)
T ss_dssp SSCCSSSSCSEEEC---
T ss_pred CCEECCeEEEEEEcCCC
Confidence 99999999999998754
No 257
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.9e-14 Score=121.93 Aligned_cols=74 Identities=27% Similarity=0.467 Sum_probs=67.6
Q ss_pred CcccEEEEcCCCC-CCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 223 KLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~-~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
...++|||+|||+ .+++++|..+|+.||.|..|.| .+|||||+|.+.++|..||
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i-------------------------~~g~afV~f~~~~~A~~A~ 62 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------------------------KNAFGFIQFDNPQSVRDAI 62 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE-------------------------ETTEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------------------------eCCEEEEEECCHHHHHHHH
Confidence 3468999999999 9999999999999999999998 3489999999999999999
Q ss_pred H-hcceeecCceeEeecCCCc
Q 008928 302 A-FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 ~-lng~~~~gr~I~V~~a~~~ 321 (548)
. ||+..|.|+.|.|.++.+.
T Consensus 63 ~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 63 ECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp HHHTCSSCBTTTBCEEEEECC
T ss_pred HHcCCCeeCCcEEEEEEcCcC
Confidence 5 9999999999999998654
No 258
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=1.2e-14 Score=124.01 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=70.0
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++|+++|..+|+.||.|.. .++.+. .++.++|||||+|.+.++|..||+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~~ 76 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDV-----------------RTGTNRKFGYVDFESAEDLEKALE 76 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEE-----------------EEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecC-----------------CCCCcCcEEEEEECCHHHHHHHHh
Confidence 34689999999999999999999999999877 332221 245688999999999999999999
Q ss_pred hcceeecCceeEeecCCCc
Q 008928 303 FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~ 321 (548)
||+..|.|+.|.|.++.+.
T Consensus 77 l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 77 LTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp GGGCCBTTBCCEEECCSCC
T ss_pred cCCcEECCcEEEEEEcCCC
Confidence 9999999999999999754
No 259
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.51 E-value=2.2e-14 Score=121.12 Aligned_cols=79 Identities=25% Similarity=0.338 Sum_probs=70.1
Q ss_pred CcccEEEEcCCCCCCcHHHHH----HHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~----~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~ 298 (548)
...++|||+|||+++++++|. .+|+.||.|..|.|+. +|.++|||||+|.+.++|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--------------------~~~~~g~afV~f~~~~~A~ 65 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--------------------SLKMRGQAFVIFKEVSSAT 65 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--------------------HHHHTTCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--------------------CCCcCcEEEEEeCCHHHHH
Confidence 346899999999999999999 9999999999998831 2346799999999999999
Q ss_pred HHH-HhcceeecCceeEeecCCCc
Q 008928 299 AAL-AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 299 ~Al-~lng~~~~gr~I~V~~a~~~ 321 (548)
.|+ .|||..|.|+.|.|.++.+.
T Consensus 66 ~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 66 NALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp HHHHHHTTCEETTEECEEEECSSC
T ss_pred HHHHHhCCCEECCcEEEEEEccCC
Confidence 999 59999999999999998754
No 260
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.51 E-value=8.1e-15 Score=126.87 Aligned_cols=81 Identities=10% Similarity=0.219 Sum_probs=74.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCC---eEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCC
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS---VEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRD 408 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~---I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~G 408 (548)
....++|||+|||+++++++|+++|..| |. |..|.|+.+.. |.++|||||+|.+.++|..||. ++ ..|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g 81 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDC----RIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQ 81 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTS----CBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhc----CCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCC
Confidence 4567899999999999999999999998 66 89999999976 9999999999999999999999 55 99999
Q ss_pred eEEEEEeeecC
Q 008928 409 RELRLSHAQQN 419 (548)
Q Consensus 409 r~I~V~~Ak~~ 419 (548)
+.|.|.++.+.
T Consensus 82 r~i~V~~a~~~ 92 (107)
T 2lmi_A 82 RYVEVYEINNE 92 (107)
T ss_dssp SCCCCEECCHH
T ss_pred eEEEEEECCHH
Confidence 99999998764
No 261
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=4.5e-14 Score=126.71 Aligned_cols=81 Identities=17% Similarity=0.262 Sum_probs=72.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHH----HHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccC
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIY----QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLR 407 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~----~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~ 407 (548)
..+.++|||+|||+.+++++|+ ++|+.| |.|..|.+.. ++.++|||||+|.+.++|..||..|+ ..|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~----G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQ----GDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccC----CCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 4457899999999999999876 799999 8999988753 57889999999999999999999888 9999
Q ss_pred CeEEEEEeeecCC
Q 008928 408 DRELRLSHAQQNC 420 (548)
Q Consensus 408 Gr~I~V~~Ak~~~ 420 (548)
|+.|.|.||....
T Consensus 99 gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 99 GNPLVITFSETPQ 111 (127)
T ss_dssp TSCCEEEECCCCC
T ss_pred CCEEEEEEccCcc
Confidence 9999999998753
No 262
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=129.04 Aligned_cols=77 Identities=18% Similarity=0.316 Sum_probs=68.5
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCe----eEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEI----DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I----~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
.++|||+|||+++|+++|++||+.||.| ..|.|+.+. +|+++|||||+|.+.++|++|
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~------------------~gr~~G~aFV~F~~~~~A~~A 84 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP------------------DGRPTGDAFVLFACEEYAQNA 84 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT------------------TSCEEEEEEECCSSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC------------------CCCEeeEEEEEECCHHHHHHH
Confidence 4799999999999999999999999975 688886542 355789999999999999999
Q ss_pred HHhcceeecCceeEeecCC
Q 008928 301 LAFNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 301 l~lng~~~~gr~I~V~~a~ 319 (548)
|.+|+..|.|+.|.|..+.
T Consensus 85 l~~~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 85 LRKHKDLLGKRYIELFRST 103 (123)
T ss_dssp HTTTTEESSSCEECCEEEC
T ss_pred HHhCCCeeCCeEEEEEECC
Confidence 9889999999999998875
No 263
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=4e-14 Score=127.03 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=69.2
Q ss_pred CcccEEEEcCCCCCCcHHHHH----HHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~----~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~ 298 (548)
...++|||+|||+.+++++|+ ++|+.||.|..|.+.. ++.++|||||+|.+.++|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--------------------~~~~rG~aFV~F~~~~~A~ 86 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--------------------SDDNSGKAYIVFATQESAQ 86 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--------------------CCSSCCCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--------------------CCCcCCEEEEEECCHHHHH
Confidence 346899999999999999866 7999999999988732 2347799999999999999
Q ss_pred HHH-HhcceeecCceeEeecCCCc
Q 008928 299 AAL-AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 299 ~Al-~lng~~~~gr~I~V~~a~~~ 321 (548)
.|+ .|||..|.|+.|.|.++...
T Consensus 87 ~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 87 AFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp HHHHHSTTCCCTTSCCEEEECCCC
T ss_pred HHHHHHCCCEeCCCEEEEEEccCc
Confidence 999 69999999999999999754
No 264
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.51 E-value=3.7e-14 Score=118.86 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=68.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
.+..|||+||++.+|+++|+++|.+| |+|.+|+|+. ++|||||+|.+.++|..|++.|| ..|.|++|+|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~----G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V 75 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQH----GPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFA 75 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHH----SCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhh----CCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 46789999999999999999999999 9999999865 58999999999999999999998 9999999999
Q ss_pred Eeee
Q 008928 414 SHAQ 417 (548)
Q Consensus 414 ~~Ak 417 (548)
.+|.
T Consensus 76 ~~A~ 79 (89)
T 2wbr_A 76 ESPS 79 (89)
T ss_dssp ECCC
T ss_pred EECC
Confidence 9985
No 265
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-14 Score=117.32 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=63.9
Q ss_pred cEEEEcCCCCCC------cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHH
Q 008928 226 RTIFVGNLPLKV------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (548)
Q Consensus 226 rtVfVgNLP~~~------tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~ 299 (548)
++|||+|||+.+ ++++|..+|+.||.|.+|.|+. . +|.++|||||+|.+.++|..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~----~---------------~g~~~g~afV~f~~~~~A~~ 62 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE----E---------------DGKTKGYIFLEYASPAHAVD 62 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC----B---------------TTBCCCEEEEEESSHHHHHH
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC----C---------------CCcEeEEEEEEECCHHHHHH
Confidence 789999999999 7899999999999999998831 1 34577999999999999999
Q ss_pred HH-HhcceeecCc-eeEee
Q 008928 300 AL-AFNMAVIGGN-HIRLD 316 (548)
Q Consensus 300 Al-~lng~~~~gr-~I~V~ 316 (548)
|+ .|||..|.|+ .|.|.
T Consensus 63 Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 63 AVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp HHTTSSSCCCSSSSCCCCC
T ss_pred HHHHhcCcccCCceeEEeC
Confidence 99 5999999999 88773
No 266
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.4e-14 Score=115.77 Aligned_cols=75 Identities=21% Similarity=0.444 Sum_probs=69.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHc-C-CccCCeE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRR-N-LKLRDRE 410 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~l-n-~~l~Gr~ 410 (548)
....++|||+|||+.+++++|+++|+.| |.|..|.|+.+ +|||||+|.+.++|..|+..| + ..|.|+.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~----G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQF----GEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTT----SCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhC----CCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 4567899999999999999999999999 89999999875 789999999999999999976 6 9999999
Q ss_pred EEEEeee
Q 008928 411 LRLSHAQ 417 (548)
Q Consensus 411 I~V~~Ak 417 (548)
|.|.||+
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999984
No 267
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.51 E-value=4.5e-14 Score=122.69 Aligned_cols=75 Identities=21% Similarity=0.333 Sum_probs=69.0
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
+...++|||+|||+++++++|..+|+.||.|..|.|+ +|||||+|.+.++|..|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------------------------kg~afV~f~~~~~A~~Ai 82 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------------------------NGFAFVEFEEAESAAKAI 82 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------------------------TTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 4456899999999999999999999999999999983 389999999999999999
Q ss_pred -HhcceeecCceeEeecCCCc
Q 008928 302 -AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 -~lng~~~~gr~I~V~~a~~~ 321 (548)
.|||..|.|+.|.|.++.+.
T Consensus 83 ~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 83 EEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp HHHTTCEETTEECEEESCSCC
T ss_pred HHcCCCEECCeEEEEEEecCC
Confidence 59999999999999999764
No 268
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.50 E-value=5.1e-14 Score=122.85 Aligned_cols=79 Identities=22% Similarity=0.468 Sum_probs=72.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
++.++|||+|||+.+++++|+.+|+.| |.|..|.|+.+ +.++|||||+|.+.++|..|+..++ ..|.|+.|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 78 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKY----GPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLV 78 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 456899999999999999999999999 89999999976 4458999999999999999999777 999999999
Q ss_pred EEeeecC
Q 008928 413 LSHAQQN 419 (548)
Q Consensus 413 V~~Ak~~ 419 (548)
|.|+.+.
T Consensus 79 v~~a~~~ 85 (115)
T 3lqv_A 79 VLYYNAN 85 (115)
T ss_dssp EEECCHH
T ss_pred EEEecCC
Confidence 9999864
No 269
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.1e-14 Score=119.67 Aligned_cols=78 Identities=28% Similarity=0.533 Sum_probs=71.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
..+.++|||+|||+.+++++|+++|..| |.|..|.|+.+ +|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKY----GKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTT----CCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhc----CCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 4567899999999999999999999999 89999999865 7899999999999999998887 89999999
Q ss_pred EEEeeecCC
Q 008928 412 RLSHAQQNC 420 (548)
Q Consensus 412 ~V~~Ak~~~ 420 (548)
.|.|+.+..
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpj_A 82 RVRFACHSA 90 (99)
T ss_dssp EEEESSCCS
T ss_pred EEEEcCCCC
Confidence 999998753
No 270
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.50 E-value=2.4e-14 Score=120.83 Aligned_cols=81 Identities=21% Similarity=0.395 Sum_probs=73.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHH----HHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccC
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIY----QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLR 407 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~----~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~ 407 (548)
..+.++|||+|||+.+++++|+ ++|+.| |.|..|.|+. +|.++|||||+|.+.++|..|+..++ ..|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~----G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRF----GQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFY 77 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG----SCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC----CCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 4567899999999999999999 999999 8999998873 57789999999999999999998877 9999
Q ss_pred CeEEEEEeeecCC
Q 008928 408 DRELRLSHAQQNC 420 (548)
Q Consensus 408 Gr~I~V~~Ak~~~ 420 (548)
|+.|.|.|+.+..
T Consensus 78 g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 78 DKPMRIQYAKTDS 90 (97)
T ss_dssp TEECEEEECSSCC
T ss_pred CcEEEEEEccCCC
Confidence 9999999998753
No 271
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=7.6e-14 Score=120.82 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=68.7
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++|+++|.++|..||.|..|.|+. . |||||+|.+.++|+.||.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~-----------------------~-g~afV~f~~~~~a~~Ai~ 68 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR-----------------------D-GTGVVEFVRKEDMTYAVR 68 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET-----------------------T-TEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec-----------------------C-CEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999832 1 799999999999999995
Q ss_pred -hcceeecC-----ceeEeecCCCcc
Q 008928 303 -FNMAVIGG-----NHIRLDRACPPR 322 (548)
Q Consensus 303 -lng~~~~g-----r~I~V~~a~~~~ 322 (548)
||+..|.| +.|.|.++.+..
T Consensus 69 ~l~g~~~~g~~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 69 KLDNTKFRSHEGETAYIRVKVDGPRS 94 (108)
T ss_dssp HSSSEEEECTTSCEEEEEEEESSCCS
T ss_pred HHCcCCccCCcCcceEEEEEeCCCCC
Confidence 99999999 999999998653
No 272
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.50 E-value=6.9e-14 Score=121.27 Aligned_cols=74 Identities=26% Similarity=0.467 Sum_probs=68.3
Q ss_pred CcccEEEEcCCCCC-CcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~-~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
...++|||+|||++ +++++|+++|+.||.|..|.| ++|||||+|.+.++|..||
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------------------------~~g~afV~f~~~~~A~~A~ 79 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------------------------HKGYAFVQYSNERHARAAV 79 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------------------------ETTEEEEECSSSHHHHHHH
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------------------------eCCEEEEEECCHHHHHHHH
Confidence 34589999999999 999999999999999999988 3489999999999999999
Q ss_pred -HhcceeecCceeEeecCCCc
Q 008928 302 -AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 -~lng~~~~gr~I~V~~a~~~ 321 (548)
.||+..|.|+.|.|.++.++
T Consensus 80 ~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 80 LGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp HHHTTCEETTEECCEEESCCC
T ss_pred HHcCCCEECCeEEEEEECCCC
Confidence 69999999999999999754
No 273
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.50 E-value=2.4e-14 Score=122.22 Aligned_cols=80 Identities=25% Similarity=0.475 Sum_probs=75.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRL 413 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V 413 (548)
...++|||+|||+.+++++|+++|+.| |.|..|.|+.+. +|.++|||||+|.+.++|..||. .+..|.|+.|.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v 80 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARY----GSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKL 80 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEE
Confidence 356899999999999999999999999 899999999997 99999999999999999999999 559999999999
Q ss_pred EeeecC
Q 008928 414 SHAQQN 419 (548)
Q Consensus 414 ~~Ak~~ 419 (548)
.++.+.
T Consensus 81 ~~a~~~ 86 (102)
T 2xs2_A 81 GPAIRK 86 (102)
T ss_dssp EEEEEC
T ss_pred EECCcC
Confidence 999875
No 274
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=4.4e-14 Score=119.60 Aligned_cols=78 Identities=19% Similarity=0.434 Sum_probs=69.5
Q ss_pred CCCccEEEEeCCCC-CCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008928 333 YDIKKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 333 ~~~~~tLfV~NLp~-~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
..+.++|||+|||+ .+++++|+.+|+.| |.|..|.|. +|||||+|.+.++|..||..++ ..|.|+.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTT----CCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 45679999999999 99999999999999 899999884 6899999999999999999877 9999999
Q ss_pred EEEEeeecCCCC
Q 008928 411 LRLSHAQQNCTP 422 (548)
Q Consensus 411 I~V~~Ak~~~~~ 422 (548)
|.|.|+.+...+
T Consensus 75 l~V~~a~~~~~~ 86 (96)
T 2kvi_A 75 LILEVSSSNARP 86 (96)
T ss_dssp BCEEEEECCCC-
T ss_pred EEEEEcCcCCCC
Confidence 999999876443
No 275
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.2e-14 Score=124.96 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=67.6
Q ss_pred CCcccEEEEcCCCCC-CcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~-~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
....++|||+|||++ +++++|.++|++||.|.+|+|+. ++|||||+|.+.++|..|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~A 78 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----------------------MKSQAFIEMETREDAMAM 78 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHH
Confidence 345689999999998 99999999999999999999832 469999999999999999
Q ss_pred HH-hc--ceeecCceeEeecCCCc
Q 008928 301 LA-FN--MAVIGGNHIRLDRACPP 321 (548)
Q Consensus 301 l~-ln--g~~~~gr~I~V~~a~~~ 321 (548)
+. |+ +..|.|+.|.|.++...
T Consensus 79 i~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 79 VDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp HHHHHHSCCCSSSSCCEEEEECSC
T ss_pred HHHhccCCceECCEEEEEEECccc
Confidence 94 65 45699999999998754
No 276
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.50 E-value=2.2e-14 Score=128.63 Aligned_cols=80 Identities=25% Similarity=0.384 Sum_probs=72.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeE--EEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--AVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRE 410 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~--~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~ 410 (548)
.....+|||+|||+++++++|+++|+.| + |. .|+|+.|+. |.++|||||+|.+.++|..||..++..|+||.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~----~-i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~ 112 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL----E-IVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRY 112 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS----C-EEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC----C-ceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEE
Confidence 3456889999999999999999999999 4 55 899999976 99999999999999999999998779999999
Q ss_pred EEEEeeec
Q 008928 411 LRLSHAQQ 418 (548)
Q Consensus 411 I~V~~Ak~ 418 (548)
|.|.++.+
T Consensus 113 I~V~~a~~ 120 (126)
T 2hgm_A 113 IEVFKSSQ 120 (126)
T ss_dssp CCCEEECH
T ss_pred EEEEECCH
Confidence 99998864
No 277
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.50 E-value=5.3e-14 Score=131.09 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=72.3
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...++|||+|||+.+++++|..+|+.||.|..|.|+.+.. +|.++|||||+|.+.++|..||
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~Ai~ 132 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR-----------------TGFSKGYALVEYETHKQALAAKE 132 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------TSSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCC-----------------CCcEeeEEEEEECCHHHHHHHHH
Confidence 3467999999999999999999999999999999965431 3457899999999999999999
Q ss_pred HhcceeecCceeEeecCCCc
Q 008928 302 AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~ 321 (548)
.||+..|.|+.|.|.++.+.
T Consensus 133 ~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 133 ALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp HHTTCEETTEECEEEESEEC
T ss_pred HhCCCEECCEEEEEEEecCC
Confidence 59999999999999998653
No 278
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.50 E-value=2.2e-14 Score=122.51 Aligned_cols=79 Identities=15% Similarity=0.359 Sum_probs=71.0
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++++++|..+|+.||.|..|.|+.+. +|.++|||||+|.+.++|..||.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR------------------TGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT------------------TSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC------------------CCCccceEEEEECCHHHHHHHHh
Confidence 346899999999999999999999999999999996654 24477999999999999999999
Q ss_pred hcceeecCceeEeecCCC
Q 008928 303 FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~ 320 (548)
++..|.|+.|.|.++.+
T Consensus 69 -~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 69 -SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp -CCCEETTEECEEEEEEE
T ss_pred -CCCeECCEEEEEEECCc
Confidence 99999999999999864
No 279
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.2e-14 Score=124.96 Aligned_cols=78 Identities=18% Similarity=0.317 Sum_probs=69.9
Q ss_pred CCCccEEEEeCCCCC-CCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC---CccCC
Q 008928 333 YDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN---LKLRD 408 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~-~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln---~~l~G 408 (548)
..+.++|||+|||++ +++++|+++|..| |.|..|.|++. +|||||+|.+.++|..||..++ ..|.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~f----G~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G 91 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPY----GKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQG 91 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTT----SCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhc----CCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 456789999999998 9999999999999 89999999753 7899999999999999998764 56999
Q ss_pred eEEEEEeeecCC
Q 008928 409 RELRLSHAQQNC 420 (548)
Q Consensus 409 r~I~V~~Ak~~~ 420 (548)
+.|.|.|+....
T Consensus 92 r~l~V~~a~~~~ 103 (112)
T 1x4f_A 92 RCVKVDLSEKYK 103 (112)
T ss_dssp SCCEEEEECSCS
T ss_pred EEEEEEECcccc
Confidence 999999998653
No 280
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.24 E-value=1.9e-15 Score=132.47 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=77.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEE--------EEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-C
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA--------VRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-L 404 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~--------VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~ 404 (548)
.+.++|||+|||+.+++++|+++|+.| |.|.. |.|+.++.++.++|||||+|.+.++|..||..|+ .
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 456899999999999999999999999 89998 9999998899999999999999999999999877 9
Q ss_pred ccCCeEEEEEeeecCC
Q 008928 405 KLRDRELRLSHAQQNC 420 (548)
Q Consensus 405 ~l~Gr~I~V~~Ak~~~ 420 (548)
.|.|+.|.|.|+.+..
T Consensus 81 ~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 81 EFSGNPIKVSFATRRA 96 (116)
Confidence 9999999999998753
No 281
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=5.8e-14 Score=118.41 Aligned_cols=78 Identities=28% Similarity=0.299 Sum_probs=67.9
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+.+++++|..+|+.||.|..| . .++.++|||||+|.+.++|..||
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~---------------------~~~~~~g~afV~f~~~~~a~~A~ 70 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-S---------------------QDGKSKGIAYIEFKSEADAEKNL 70 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-E---------------------ETTEEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-C---------------------CCCCcceEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999987665 1 13447799999999999999999
Q ss_pred H-hcceeecCceeEeecCCCc
Q 008928 302 A-FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 ~-lng~~~~gr~I~V~~a~~~ 321 (548)
. ||+..|.|+.|.|.++.+.
T Consensus 71 ~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 71 EEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp HHTTEEEETTEEEEEEECSSS
T ss_pred HHhCCCEECCeEEEEEEcCCC
Confidence 5 9999999999999998654
No 282
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.49 E-value=2e-14 Score=117.79 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=65.8
Q ss_pred cEEEEeCCCCCC------CHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCe
Q 008928 337 KTVFVGNLPFDV------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDR 409 (548)
Q Consensus 337 ~tLfV~NLp~~~------teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr 409 (548)
++|||+|||+.+ ++++|+++|+.| |.|..|.|+ ..+|.++|||||+|.+.++|..||..|+ ..|.|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT----CCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc----CCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 689999999999 679999999999 899999988 3689999999999999999999999887 999999
Q ss_pred -EEEE
Q 008928 410 -ELRL 413 (548)
Q Consensus 410 -~I~V 413 (548)
.|+|
T Consensus 76 ~~l~V 80 (81)
T 2krb_A 76 HTFRV 80 (81)
T ss_dssp SCCCC
T ss_pred eeEEe
Confidence 8876
No 283
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.49 E-value=4e-14 Score=128.04 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=72.7
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...++|||+|||+++|+++|.++|+.||.|..|.|+.+. .++.++|||||+|.+.++|+.||
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-----------------~~g~~~G~afV~F~~~~~A~~Ai~ 107 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR-----------------YTKESRGFAFVRFHDKRDAEDAMD 107 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS-----------------SSSSCCSCCEEECSCHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC-----------------CCCccceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999985433 13457899999999999999999
Q ss_pred HhcceeecCceeEeecCCCc
Q 008928 302 AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~ 321 (548)
.||+..|.|+.|.|.++.+.
T Consensus 108 ~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 108 AMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp TTTTCCSSSSCCEEEECCCC
T ss_pred HcCCCEECCEEEEEEECCCC
Confidence 59999999999999999764
No 284
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=5.1e-14 Score=118.74 Aligned_cols=79 Identities=22% Similarity=0.399 Sum_probs=70.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|..| |.|..| ..++.++|||||+|.+.++|..||..++ ..|.|+.|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~----g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 83 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDA----LEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSE----EEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC----CcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4467899999999999999999999999 777655 3578899999999999999999999888 99999999
Q ss_pred EEEeeecCC
Q 008928 412 RLSHAQQNC 420 (548)
Q Consensus 412 ~V~~Ak~~~ 420 (548)
.|.|+.+..
T Consensus 84 ~v~~a~~~~ 92 (96)
T 1fjc_A 84 SLYYTGEKG 92 (96)
T ss_dssp EEEECSSSC
T ss_pred EEEEcCCCC
Confidence 999998753
No 285
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.49 E-value=3.7e-14 Score=127.17 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=68.5
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCee--EEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEID--SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~--sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
...++|||+|||+++|+++|+++|+.| .|. .|+|+.++ .|.++|||||+|.+.++|++|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~------------------~GrsrGfaFV~F~~~e~A~~A 100 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDP------------------EGKITGEAFVQFASQELAEKA 100 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCS------------------SSSSCSEEEEEESSTTHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECC------------------CCCCceEEEEEECCHHHHHHH
Confidence 345799999999999999999999999 566 88885543 245789999999999999999
Q ss_pred HHhcceeecCceeEeecCCC
Q 008928 301 LAFNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 301 l~lng~~~~gr~I~V~~a~~ 320 (548)
|.+++..|.|+.|.|.++.+
T Consensus 101 l~~~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 101 LGKHKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp HTTTTCCBTTBCCCCEEECH
T ss_pred HHHCCCEECCEEEEEEECCH
Confidence 98888999999999988753
No 286
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.49 E-value=5.4e-14 Score=123.40 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=64.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE--
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE-- 410 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~-- 410 (548)
...++|||+|||+++++++|+++|..| |.|..|.|+.+ |||||+|.+.++|..||..|+ ..|.|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGG----SCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 356899999999999999999999999 89999999876 899999999999999999887 9999998
Q ss_pred ---EEEEeeecC
Q 008928 411 ---LRLSHAQQN 419 (548)
Q Consensus 411 ---I~V~~Ak~~ 419 (548)
|.|..+.+.
T Consensus 83 ~~~i~v~~~~~~ 94 (115)
T 3beg_B 83 TAYIRVKVDGPR 94 (115)
T ss_dssp CCBCEEEECC--
T ss_pred eEEEEeccCCCC
Confidence 666666553
No 287
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.49 E-value=9.6e-14 Score=134.21 Aligned_cols=82 Identities=24% Similarity=0.391 Sum_probs=76.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
.+.++|||+|||+++++++|+++|+.| |.|.+|+|++|..++.++|||||+|.+.++|..||..++ ..+.|+.|+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~ 88 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPA----GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR 88 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhh----CCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccc
Confidence 456899999999999999999999999 999999999999999999999999999999999999888 899999999
Q ss_pred EEeeecC
Q 008928 413 LSHAQQN 419 (548)
Q Consensus 413 V~~Ak~~ 419 (548)
|.++...
T Consensus 89 ~~~~~~~ 95 (213)
T 4f02_A 89 IMWSQRD 95 (213)
T ss_dssp EEECCCC
T ss_pred ccccccc
Confidence 9998754
No 288
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.49 E-value=8.3e-14 Score=115.01 Aligned_cols=72 Identities=26% Similarity=0.546 Sum_probs=65.8
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhc----C-------CeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEe
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKF----G-------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVF 291 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~f----G-------~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F 291 (548)
...++|||+|||+++++++|.++|+.| | .|.+|.+.. ++|||||+|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-----------------------~kg~afV~f 60 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEF 60 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-----------------------SSSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-----------------------CCcEEEEEc
Confidence 456899999999999999999999999 8 899998832 459999999
Q ss_pred cCHHHHHHHHHhcceeecCceeEeec
Q 008928 292 KSEQSTEAALAFNMAVIGGNHIRLDR 317 (548)
Q Consensus 292 ~s~e~A~~Al~lng~~~~gr~I~V~~ 317 (548)
.+.++|..|+.||+..|.|+.|.|.+
T Consensus 61 ~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 61 RSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred CCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 99999999999999999999999975
No 289
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.8e-13 Score=114.19 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=69.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+.+|+.| |.|..|.|+++ ||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERR----GRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHH----SCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcC----CCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3467899999999999999999999999 89999998743 99999999999999999877 99999999
Q ss_pred EEEeeecC
Q 008928 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|.|+.+.
T Consensus 74 ~v~~a~~~ 81 (90)
T 2dnp_A 74 NVELSTKG 81 (90)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99999875
No 290
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.48 E-value=6.5e-14 Score=122.80 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=69.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCC-CeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G-~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
...+|||+|||+++++++|+++|..| | .|..|.|+.+ .++|||||+|.+.++|..||..|+ ..|.|+.|.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~----G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAREN----SLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHH----TCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh----CCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 46899999999999999999999999 8 8999988643 478999999999999999999888 999999999
Q ss_pred EEeeecC
Q 008928 413 LSHAQQN 419 (548)
Q Consensus 413 V~~Ak~~ 419 (548)
|.++...
T Consensus 99 V~~a~~~ 105 (111)
T 2jvr_A 99 VERDDNP 105 (111)
T ss_dssp EEESCC-
T ss_pred EEECCCC
Confidence 9998753
No 291
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8.6e-14 Score=121.24 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=68.9
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...++|||+|||+++|+++|.++|+.||.|..|.+..+.. ++.++|||||+|.+.++|..||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-----------------~g~~~g~afV~f~~~~~a~~Ai~ 85 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-----------------TGRMRGQAFITFPNKEIAWQALH 85 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-----------------CSSSCSEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-----------------CCccceEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999984432211111 3457899999999999999999
Q ss_pred HhcceeecCceeEeecCCCcc
Q 008928 302 AFNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~~ 322 (548)
.||+..|.|+.|.|.++.+..
T Consensus 86 ~l~g~~~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 86 LVNGYKLYGKILVIEFGKNKK 106 (115)
T ss_dssp HSTTCBCSSCBCEEEECCCCS
T ss_pred HhCCCEeCCcEEEEEEccCCC
Confidence 599999999999999997654
No 292
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=8.3e-14 Score=118.04 Aligned_cols=78 Identities=26% Similarity=0.386 Sum_probs=69.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|..| |.|. +.++.+ .++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~----G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALREL----GSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTL 86 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHT----TCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhc----CCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3457899999999999999999999999 8886 666654 578999999999999999998877 99999999
Q ss_pred EEEeeecC
Q 008928 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|.|+.++
T Consensus 87 ~V~~a~~~ 94 (97)
T 2e5j_A 87 RVALARQQ 94 (97)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99999875
No 293
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.7e-14 Score=117.85 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=67.0
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCC-eeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~-I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
...++|||+|||+++|+++|+++|+.||. |..+.++ ++|||||+|.+.++|..||
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------------------------~~g~afV~f~~~~~A~~A~ 61 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------------------------KSGYAFVDYPDQNWAIRAI 61 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------------------------ETTEEEECCSCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------------------------CCCEEEEEECCHHHHHHHH
Confidence 34689999999999999999999999999 6666551 4589999999999999999
Q ss_pred -Hhcc-eeecCceeEeecCCCcc
Q 008928 302 -AFNM-AVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 -~lng-~~~~gr~I~V~~a~~~~ 322 (548)
.||+ ..|.|+.|.|.++.+..
T Consensus 62 ~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 62 ETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp HHHTTTCEETTEECEEEECCCCC
T ss_pred HHccCCeeECCEEEEEEEccCcc
Confidence 5999 99999999999997653
No 294
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.48 E-value=1.6e-13 Score=125.45 Aligned_cols=80 Identities=24% Similarity=0.435 Sum_probs=75.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEE
Q 008928 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLS 414 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~ 414 (548)
.++|||+|||+.+++++|+++|+.| |.|..|.|+.+..+|.++|||||+|.+.++|..|+..++ ..|.|+.|.|.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 77 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSI----GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS 77 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEE
Confidence 5799999999999999999999999 899999999998899999999999999999999998777 99999999999
Q ss_pred eeecC
Q 008928 415 HAQQN 419 (548)
Q Consensus 415 ~Ak~~ 419 (548)
|+.+.
T Consensus 78 ~~~~~ 82 (167)
T 1fxl_A 78 YARPS 82 (167)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99764
No 295
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.47 E-value=1.4e-13 Score=129.74 Aligned_cols=83 Identities=22% Similarity=0.424 Sum_probs=77.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELR 412 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~ 412 (548)
....++|||+|||+++++++|+++|+.| |.|..|.|+.++.+|.++|||||+|.+.++|..||..++..|.|+.|.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~ 85 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQW----GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE 85 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEee
Confidence 4567899999999999999999999999 899999999999999999999999999999999999877999999999
Q ss_pred EEeeecC
Q 008928 413 LSHAQQN 419 (548)
Q Consensus 413 V~~Ak~~ 419 (548)
|.++.+.
T Consensus 86 v~~~~~~ 92 (196)
T 1l3k_A 86 PKRAVSR 92 (196)
T ss_dssp EEECCC-
T ss_pred eecccCc
Confidence 9998765
No 296
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.47 E-value=1.5e-14 Score=131.78 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=70.1
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++|+++|+++|+.|| |..|.|+.++ ++.++|||||+|.+.++|..||.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~------------------~g~srGfaFV~F~~~e~A~~Al~ 104 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP------------------DGRVTGEADVEFATHEEAVAAMS 104 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS------------------SSCSSCCCEEECSHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC------------------CCCCceEEEEEeCCHHHHHHHHh
Confidence 3457999999999999999999999999 6689885543 24578999999999999999999
Q ss_pred hcceeecCceeEeecCCCc
Q 008928 303 FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~ 321 (548)
+|+..|.|+.|.|.++.+.
T Consensus 105 ~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 105 KDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp CCSCSSSSCCCCCEECCCS
T ss_pred hCCCEECCEEEEEEECCCC
Confidence 9999999999999998754
No 297
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=6.8e-14 Score=119.20 Aligned_cols=75 Identities=20% Similarity=0.399 Sum_probs=69.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
..++|||+|||+.+++++|+.+|..| |.|..|.|+. ++|||||+|.+.++|..|+..++ ..|.|+.|+|
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF----GFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT----SCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC----CCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 46899999999999999999999999 8999999873 47999999999999999998877 9999999999
Q ss_pred EeeecC
Q 008928 414 SHAQQN 419 (548)
Q Consensus 414 ~~Ak~~ 419 (548)
.|++++
T Consensus 96 ~~a~~~ 101 (101)
T 2la4_A 96 GWGKER 101 (101)
T ss_dssp CBCCCC
T ss_pred EeccCC
Confidence 999763
No 298
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.1e-13 Score=114.86 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=68.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
...++|||+|||+.+++++|+.+|..| |.|..| +.+..++. ||||+|.+.++|..||. ++ ..|.|+.|.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~ 75 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAF----GPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLR 75 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGT----SCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEE
Confidence 346799999999999999999999999 899987 66666665 99999999999999999 77 999999999
Q ss_pred EEeeecC
Q 008928 413 LSHAQQN 419 (548)
Q Consensus 413 V~~Ak~~ 419 (548)
|.++.+.
T Consensus 76 V~~a~~~ 82 (94)
T 2e5g_A 76 VRPREQK 82 (94)
T ss_dssp CBCSCCS
T ss_pred EEECCcC
Confidence 9988764
No 299
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.1e-14 Score=116.92 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=66.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCC-eEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC--CccCCeE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS-VEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN--LKLRDRE 410 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~-I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln--~~l~Gr~ 410 (548)
...++|||+|||+++++++|+++|..| |. |..+.+. ++|||||+|.+.++|..||..++ ..|.|+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 74 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDR----KLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKI 74 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHT----TCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc----CCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEE
Confidence 456899999999999999999999999 77 5555552 47899999999999999998665 7899999
Q ss_pred EEEEeeecCCC
Q 008928 411 LRLSHAQQNCT 421 (548)
Q Consensus 411 I~V~~Ak~~~~ 421 (548)
|.|.|+.+...
T Consensus 75 l~v~~a~~~~~ 85 (93)
T 2cqh_A 75 MEVDYSVSKKL 85 (93)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEEccCccc
Confidence 99999987643
No 300
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.47 E-value=1.1e-13 Score=120.28 Aligned_cols=76 Identities=21% Similarity=0.426 Sum_probs=70.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+.+|+.| |.|..|.|+ +|||||+|.+.++|..|+..|+ ..|.|+.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPF----GPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTT----SCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 4467899999999999999999999999 899999987 6899999999999999998877 99999999
Q ss_pred EEEeeecCC
Q 008928 412 RLSHAQQNC 420 (548)
Q Consensus 412 ~V~~Ak~~~ 420 (548)
.|.|+.+..
T Consensus 96 ~V~~a~~~~ 104 (108)
T 2jvo_A 96 EVVYSKLPA 104 (108)
T ss_dssp EEESCSCCC
T ss_pred EEEEecCCC
Confidence 999998753
No 301
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.47 E-value=1.6e-13 Score=125.93 Aligned_cols=81 Identities=27% Similarity=0.489 Sum_probs=76.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
+.++|||+|||+++++++|+++|+.| |.|..|.|+.++.+|.++|||||+|.+.++|..|+..++ ..|.|+.|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 77 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAI----GPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKV 77 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEE
Confidence 46899999999999999999999999 899999999998899999999999999999999998777 9999999999
Q ss_pred EeeecC
Q 008928 414 SHAQQN 419 (548)
Q Consensus 414 ~~Ak~~ 419 (548)
.|+.+.
T Consensus 78 ~~~~~~ 83 (168)
T 1b7f_A 78 SYARPG 83 (168)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999865
No 302
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.46 E-value=2.4e-13 Score=115.62 Aligned_cols=75 Identities=19% Similarity=0.447 Sum_probs=69.0
Q ss_pred CCCccEEEEeCCCC-CCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008928 333 YDIKKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 333 ~~~~~tLfV~NLp~-~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
..+.++|||+|||+ .+++++|+++|+.| |.|..|.|. +|||||+|.+.++|..||..++ ..|.|+.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~----G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGG----SCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 45679999999998 99999999999999 899999883 7899999999999999999777 9999999
Q ss_pred EEEEeeecC
Q 008928 411 LRLSHAQQN 419 (548)
Q Consensus 411 I~V~~Ak~~ 419 (548)
|.|.|+.+.
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999999764
No 303
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.46 E-value=7.6e-14 Score=137.37 Aligned_cols=80 Identities=14% Similarity=0.181 Sum_probs=71.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcC--CeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG--EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG--~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
..++|||+|||+++|+++|+++|+.|| .|..|.|+.+.. ++.++|||||+|.+.++|.+||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~-----------------tg~skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA-----------------NGQSKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTT-----------------TCCEEEEEEEEESCTTHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCC-----------------CCccceEEEEEECCHHHHHHHH
Confidence 467999999999999999999999999 999999976542 3568899999999999999999
Q ss_pred H-hcceeecCceeEeecCCC
Q 008928 302 A-FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 302 ~-lng~~~~gr~I~V~~a~~ 320 (548)
. ||+..|.|+.|.|.++.+
T Consensus 130 ~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 130 DLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp TTSTTSCBTTBCCEEEECCH
T ss_pred HHcCCCeECCEEeEEEECCC
Confidence 5 999999999999999863
No 304
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=120.59 Aligned_cols=75 Identities=24% Similarity=0.219 Sum_probs=69.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
..++|||+|||+.+++++|+++|..| |.|..|.|+. ++|||||+|.+.++|..||..|| ..|.|+.|.|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 78 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF----GSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYL 78 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Confidence 46799999999999999999999999 8999998874 47899999999999999999887 9999999999
Q ss_pred EeeecC
Q 008928 414 SHAQQN 419 (548)
Q Consensus 414 ~~Ak~~ 419 (548)
.|+...
T Consensus 79 ~~a~~~ 84 (111)
T 1whx_A 79 EWAPIG 84 (111)
T ss_dssp EEEETT
T ss_pred EECCCC
Confidence 999875
No 305
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=115.99 Aligned_cols=77 Identities=13% Similarity=0.279 Sum_probs=67.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEE-EeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVR-IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVr-i~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
..++|||+|||+++++++|..+|+.||.|..|+ |+.++ ..|.|||+|.+.++|..||
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~---------------------~~~~afV~f~~~~~a~~Ai~ 72 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS---------------------ETAVVNVTYSSKDQARQALD 72 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS---------------------SSEEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---------------------CCCEEEEEECCHHHHHHHHH
Confidence 358999999999999999999999999999994 64432 3355999999999999999
Q ss_pred HhcceeecCceeEeecCCCc
Q 008928 302 AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~ 321 (548)
.||+..|.|+.|.|.++.+.
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 73 KLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHTTCBCSSCBCEEEECCCC
T ss_pred HhCCCEECCcEEEEEEcCcc
Confidence 59999999999999999764
No 306
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.46 E-value=1.3e-13 Score=126.04 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=70.6
Q ss_pred CCCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 221 ~~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.+ ++|||||+|.+.++|..|
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A 126 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAADA 126 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----------------------SCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----------------------CCcEEEEEECCHHHHHHH
Confidence 3445689999999999999999999999999999999432 458999999999999999
Q ss_pred HH-hcceeecCceeEeecCCCc
Q 008928 301 LA-FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 301 l~-lng~~~~gr~I~V~~a~~~ 321 (548)
|. |||..|.|+.|.|.++.++
T Consensus 127 ~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 127 VRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHcCCCEECCeEEEEEEcCCC
Confidence 94 9999999999999998754
No 307
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.2e-13 Score=113.68 Aligned_cols=76 Identities=25% Similarity=0.374 Sum_probs=65.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHh
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (548)
..++|||+|||+++|+++|..+|+.||.|..|.+ +.. + .. ||||+|.+.++|..||.|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~--~~~-----------------~--g~-~afV~f~~~~~a~~ai~l 64 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVM--DKD-----------------K--GV-FAIVEMGDVGAREAVLSQ 64 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEE--CSS-----------------S--CC-EEEEEESSHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE--cCC-----------------C--Cc-EEEEEECCHHHHHHHHhc
Confidence 3579999999999999999999999999998722 210 1 12 999999999999999999
Q ss_pred cceeecCceeEeecCCCc
Q 008928 304 NMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~ 321 (548)
|+..|.|+.|.|.++.+.
T Consensus 65 ~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 65 SQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp SCCEETTEECCCBCSCCS
T ss_pred CCeEECCEEEEEEECCcC
Confidence 999999999999988654
No 308
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.46 E-value=1.4e-13 Score=130.14 Aligned_cols=82 Identities=23% Similarity=0.330 Sum_probs=77.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+.+++++|+++|+.| |.|..|.|+.+. ++.++|||||+|.+.++|..||..++ ..|.|+.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l 159 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 159 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHT----SCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 4457899999999999999999999999 899999999997 89999999999999999999999888 99999999
Q ss_pred EEEeeecC
Q 008928 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|.||...
T Consensus 160 ~V~~a~~~ 167 (177)
T 2f3j_A 160 DIQLVASQ 167 (177)
T ss_dssp EEEEESSG
T ss_pred EEEEecCC
Confidence 99999765
No 309
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.46 E-value=1.4e-13 Score=131.99 Aligned_cols=122 Identities=15% Similarity=0.203 Sum_probs=91.9
Q ss_pred CHHHHHHHHH-h--cceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEE
Q 008928 293 SEQSTEAALA-F--NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA 369 (548)
Q Consensus 293 s~e~A~~Al~-l--ng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~ 369 (548)
+.+.+..|+. . ....+.+..+.|.....................++|||+|||+.+++++|+++|+.| |.|..
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~v~~ 138 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK----GQVLN 138 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTS----CCEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcC----CCEEE
Confidence 4566777774 3 455666666666554211000000000011235899999999999999999999999 89999
Q ss_pred EEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEEeeecC
Q 008928 370 VRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHAQQN 419 (548)
Q Consensus 370 VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~Ak~~ 419 (548)
|+|+++. +|.++|||||+|.+.++|..||..++..|.|+.|.|.|+..-
T Consensus 139 v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 139 IQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp EEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred EEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 9999985 599999999999999999999998889999999999997653
No 310
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=6.1e-15 Score=129.15 Aligned_cols=85 Identities=22% Similarity=0.268 Sum_probs=73.0
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeE--------EEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecC
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS--------VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~s--------Vri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s 293 (548)
....++|||+|||+++++++|.++|+.||.|.. |.|+.++ .++.++|||||+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~-----------------~~g~~~g~afV~f~~ 66 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR-----------------ETGKLKGEATVSFDD 66 (116)
Confidence 345689999999999999999999999999988 6664432 235578999999999
Q ss_pred HHHHHHHHH-hcceeecCceeEeecCCCccc
Q 008928 294 EQSTEAALA-FNMAVIGGNHIRLDRACPPRK 323 (548)
Q Consensus 294 ~e~A~~Al~-lng~~~~gr~I~V~~a~~~~k 323 (548)
.++|..||. ||+..|.|+.|.|.++.+...
T Consensus 67 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 67 PPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 999999995 999999999999999976543
No 311
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.45 E-value=4.1e-14 Score=128.41 Aligned_cols=83 Identities=19% Similarity=0.254 Sum_probs=70.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEE--E---eecCCCCCCceEEEEEECCHHHHHHHHHHcC-Ccc
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVR--V---IRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKL 406 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~Vr--I---~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l 406 (548)
..+.++|||+|||+.+++++|+.+|+.| |.|..|. + +....+|.++|||||+|.+.++|..||..|| ..|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRY----VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGG----CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 3467899999999999999999999999 7776641 1 1112468899999999999999999999877 999
Q ss_pred CCeEEEEEeeecC
Q 008928 407 RDRELRLSHAQQN 419 (548)
Q Consensus 407 ~Gr~I~V~~Ak~~ 419 (548)
.|+.|.|.||.+.
T Consensus 118 ~g~~l~V~~a~~~ 130 (143)
T 3egn_A 118 FGKPMVVQFARSA 130 (143)
T ss_dssp TTEECEEEECCCS
T ss_pred CCcEEEEEECCCC
Confidence 9999999999864
No 312
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=6.2e-13 Score=112.58 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=67.4
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...++|||+|| ++|+++|+++|+.||.|..|.|. .++|||||+|.+.++|..||
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----------------------~~~g~afV~f~~~~~a~~Ai~ 67 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----------------------PPRNCAFVTYEKMESADQAVA 67 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----------------------TTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----------------------CCCCEEEEEECCHHHHHHHHH
Confidence 34689999996 99999999999999999999882 16699999999999999999
Q ss_pred HhcceeecCceeEeecCCCcc
Q 008928 302 AFNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~~ 322 (548)
.||+..|.|+.|.|.++.+..
T Consensus 68 ~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 68 ELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp HTTTEEETTEEEEEECCSSCC
T ss_pred HhCCCeECCeEEEEEECCCCC
Confidence 699999999999999997643
No 313
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.44 E-value=1.7e-13 Score=124.28 Aligned_cols=85 Identities=24% Similarity=0.209 Sum_probs=69.1
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEE--EeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVR--IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVr--i~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
...++|||+|||+++|+++|..+|+.||.|..|. ++.+- ....+|.++|||||+|.+.++|..|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di--------------~~~~~g~~~g~afV~f~~~~~A~~A 108 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDI--------------RLMKEGRMKGQAFIGLPNEKAAAKA 108 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEE--------------EEEEETTTEEEEEEECSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeE--------------EeccCCCcccEEEEEeCCHHHHHHH
Confidence 4568999999999999999999999999987641 10000 0012456889999999999999999
Q ss_pred HH-hcceeecCceeEeecCCCc
Q 008928 301 LA-FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 301 l~-lng~~~~gr~I~V~~a~~~ 321 (548)
|. |||..|.|+.|.|.++.+.
T Consensus 109 i~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 109 LKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp HHHHTTBEETTEECEEEECCCS
T ss_pred HHHhCCCEeCCcEEEEEECCCC
Confidence 95 9999999999999999754
No 314
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.6e-13 Score=114.40 Aligned_cols=79 Identities=15% Similarity=0.265 Sum_probs=71.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEE-EeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVR-VIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~Vr-I~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
....++|||+|||+.+++++|+.+|..| |.|..|+ |+.++.++ .|||+|.+.++|..||..|+ ..|.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQY----GVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHH----SCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhc----CCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3456899999999999999999999999 8999994 88886644 49999999999999998777 9999999
Q ss_pred EEEEeeecC
Q 008928 411 LRLSHAQQN 419 (548)
Q Consensus 411 I~V~~Ak~~ 419 (548)
|.|.|+.+.
T Consensus 84 l~V~~a~~~ 92 (96)
T 2e44_A 84 LKVAYIPDE 92 (96)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCcc
Confidence 999999876
No 315
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.4e-13 Score=114.89 Aligned_cols=81 Identities=26% Similarity=0.332 Sum_probs=68.2
Q ss_pred CCcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
....++|||+|||+++++++|+++|+.|+ .|.++.+. .++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~-----------------~~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDR-----------------ETGSSKGFGFVDFNSEEDAKAAK 71 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECS-----------------SSCSEEEEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecC-----------------CCCCcCcEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999885 55554432 13457799999999999999999
Q ss_pred H-hcceeecCceeEeecCCCcc
Q 008928 302 A-FNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 302 ~-lng~~~~gr~I~V~~a~~~~ 322 (548)
. ||+..|.|+.|.|.++.+..
T Consensus 72 ~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 72 EAMEDGEIDGNKVTLDWAKPKG 93 (102)
T ss_dssp HHHTTCEETTEECEEEECCCCC
T ss_pred HHhCCCeECCeEEEEEEecCCC
Confidence 5 99999999999999997653
No 316
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.44 E-value=1.9e-13 Score=114.55 Aligned_cols=77 Identities=25% Similarity=0.388 Sum_probs=63.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELR 412 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~ 412 (548)
..+..+|||+|||+++++++|+++|+.| |.|..|.|+++ ++|||||+|.+.++|..+. .....+.|+.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~----G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~ 77 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQY----GEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVH 77 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEE
Confidence 3457899999999999999999999999 99999999875 6899999999999998432 112567799999
Q ss_pred EEeeecC
Q 008928 413 LSHAQQN 419 (548)
Q Consensus 413 V~~Ak~~ 419 (548)
|.+|.++
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9999875
No 317
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.44 E-value=2.2e-13 Score=113.38 Aligned_cols=73 Identities=12% Similarity=0.228 Sum_probs=66.5
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (548)
..++|||+|||+++++++|+++|+.| .|..|.|. .++|||||+|.+.++|..|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----------------------~~~g~afV~f~~~~~a~~Ai~~ 59 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----------------------RNKRTAFVTLLNGEQAQNAIQM 59 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----------------------GGGTEEEECCSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----------------------CCCcEEEEEECCHHHHHHHHHH
Confidence 45899999999999999999999999 99999882 156999999999999999995
Q ss_pred hcceeecCceeEeecCCC
Q 008928 303 FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~ 320 (548)
||+..|.|+.|.|.++..
T Consensus 60 l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 60 FHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp HTTEEETTEEEEEEECCC
T ss_pred hCCCeECCcEEEEEEcCC
Confidence 999999999999999853
No 318
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.1e-13 Score=115.00 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=66.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLS 414 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~ 414 (548)
..++|||+|||+.+++++|+++|..| |.|..|.|+.+ ++|||||+|.+.++|+.|+.. ...+.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~ 73 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY----GDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHIS 73 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT----SCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEE
Confidence 46899999999999999999999999 89999999865 689999999999999865332 366799999999
Q ss_pred eeecCC
Q 008928 415 HAQQNC 420 (548)
Q Consensus 415 ~Ak~~~ 420 (548)
++.++.
T Consensus 74 ~a~~~~ 79 (88)
T 1wf0_A 74 NAEPKH 79 (88)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 998753
No 319
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=8.8e-13 Score=111.65 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=68.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|| .+++++|+++|..| |.|..|.|. .++|||||+|.+.++|..||..|+ ..|.|+.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~----G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTT----SCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhC----CCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 345789999996 89999999999999 899999884 458899999999999999998887 99999999
Q ss_pred EEEeeecCC
Q 008928 412 RLSHAQQNC 420 (548)
Q Consensus 412 ~V~~Ak~~~ 420 (548)
.|.|+.+..
T Consensus 80 ~v~~a~~~~ 88 (97)
T 1x5p_A 80 KVNIARKQP 88 (97)
T ss_dssp EEECCSSCC
T ss_pred EEEECCCCC
Confidence 999998753
No 320
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.43 E-value=3.1e-13 Score=127.87 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=72.1
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+.+++++|.++|+.||.|..|.|+.+. ++.++|||||+|.+.++|..||.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~------------------~g~~kG~afV~F~~~~~A~~Ai~ 147 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR------------------SGRSLGTADVHFERRADALKAMK 147 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT------------------TSSCSCCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------------------CCCEeeEEEEEeCCHHHHHHHHH
Confidence 346899999999999999999999999999999995543 34577999999999999999995
Q ss_pred -hcceeecCceeEeecCCCc
Q 008928 303 -FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~~~ 321 (548)
||+..|.|+.|.|.++...
T Consensus 148 ~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 148 QYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp HSTTCBCSSSBCEEEEESSG
T ss_pred HhCCCEECCEEEEEEEecCC
Confidence 9999999999999998653
No 321
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.42 E-value=3.1e-13 Score=113.29 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=60.9
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
....+|||+|||+++|+++|+++|+.||.|.+|.|+.+ ++|||||+|.+.++|..+..
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----------------------srGfaFV~F~~~~~A~~~~~ 66 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----------------------FRAFAFVTFADDKVAQSLCG 66 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----------------------CCSEEEEEESCHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----------------------CCCEEEEEECCHHHHHHHcC
Confidence 34689999999999999999999999999999998431 56999999999999984322
Q ss_pred hcceeecCceeEeecCCCc
Q 008928 303 FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~~~ 321 (548)
. ...+.|+.|.|.++.+.
T Consensus 67 ~-~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 67 E-DLIIKGISVHISNAEPK 84 (89)
T ss_dssp C-EEEETTEEEEEEECC--
T ss_pred C-CcccCCEEEEEEEcCCC
Confidence 1 34456999999998754
No 322
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=8.1e-13 Score=111.90 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=65.0
Q ss_pred CCccE-EEEeCCCCCCCHHH----HHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccC
Q 008928 334 DIKKT-VFVGNLPFDVKDEE----IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLR 407 (548)
Q Consensus 334 ~~~~t-LfV~NLp~~~teed----L~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~ 407 (548)
.+..+ |||+|||+.+++++ |+++|++|| |.|.+| ++ |||||.|.+.++|..|++.|+ ..|.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG---G~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~ 72 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCG---GKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVF 72 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTT---CCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcC---CeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccC
Confidence 34455 99999999999988 558999994 499988 33 999999999999999998887 9999
Q ss_pred CeEEEEEeeecCCC
Q 008928 408 DRELRLSHAQQNCT 421 (548)
Q Consensus 408 Gr~I~V~~Ak~~~~ 421 (548)
||+|+|.||+..+.
T Consensus 73 gr~i~v~~A~~~sd 86 (96)
T 2diu_A 73 GNRIIVSFTPKNRE 86 (96)
T ss_dssp SSCCEEESSCCSCC
T ss_pred CceEEEEecCCCcc
Confidence 99999999998643
No 323
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4e-13 Score=111.61 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=64.7
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHh
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (548)
..++|||+|||+++++++|.++|+.||.|..|.|+.+ ++|||||+|.+.++|++|+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~~~~~ 61 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----------------------FRAFAFVTFADDQIAQSLCGE 61 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----------------------CCSCCEEECSCHHHHHHTTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----------------------CCCEEEEEECCHHHHHHHhcC
Confidence 3589999999999999999999999999999998321 569999999999999866433
Q ss_pred cceeecCceeEeecCCCcc
Q 008928 304 NMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~~~ 322 (548)
...+.|+.|.|.++.+..
T Consensus 62 -~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 62 -DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp -EEEETTEEEEEECCCCCC
T ss_pred -CceeCCEEEEEEecCCCC
Confidence 456789999999987654
No 324
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.40 E-value=6e-13 Score=127.55 Aligned_cols=79 Identities=11% Similarity=0.132 Sum_probs=69.9
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHh
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (548)
..++|||+|||+++|+++|.++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|..||.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~------------------~~~~kG~aFVeF~~~e~A~~A~~~ 169 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL------------------HKAFKGSIFVVFDSIESAKKFVET 169 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT------------------TCCEEEEEEEEESSHHHHHHHHHC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC------------------CCCcccEEEEEECCHHHHHHHHHh
Confidence 35899999999999999999999999999999996643 244789999999999999999986
Q ss_pred cceeecCceeEeecCCC
Q 008928 304 NMAVIGGNHIRLDRACP 320 (548)
Q Consensus 304 ng~~~~gr~I~V~~a~~ 320 (548)
.+..|.|+.|.|.+...
T Consensus 170 ~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 170 PGQKYKETDLLILFKDD 186 (193)
T ss_dssp TTCEETTEECEEEETTT
T ss_pred CCCeECCEEEEEEEhHH
Confidence 66799999999998753
No 325
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.6e-13 Score=118.62 Aligned_cols=73 Identities=15% Similarity=0.259 Sum_probs=64.7
Q ss_pred cccEEEE--cCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH
Q 008928 224 LLRTIFV--GNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (548)
Q Consensus 224 ~~rtVfV--gNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (548)
..++||| +|||+++++++|+++|++||.|..|.|+. .+|||||+|.+.++|+.|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~rgfaFV~f~~~~~A~~Ai 80 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAY 80 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----------------------TCSCEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 4578999 77999999999999999999999988731 3589999999999999999
Q ss_pred -Hhcceee-----cCceeEeecCC
Q 008928 302 -AFNMAVI-----GGNHIRLDRAC 319 (548)
Q Consensus 302 -~lng~~~-----~gr~I~V~~a~ 319 (548)
.|||..| .|+.|.|.++.
T Consensus 81 ~~lnG~~~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 81 VTLNGKEVVDDLGQKITLYLNFVE 104 (114)
T ss_dssp HHTTTCEEECTTSCEEECEEEEES
T ss_pred HHhCCCEEccccCCCcEEEEEecc
Confidence 5999988 67889998875
No 326
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.40 E-value=4e-13 Score=120.11 Aligned_cols=78 Identities=8% Similarity=0.117 Sum_probs=69.4
Q ss_pred cEEEEeCC----CCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECC----HHH----HHHHHH--Hc
Q 008928 337 KTVFVGNL----PFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT----REA----ANLVIK--RR 402 (548)
Q Consensus 337 ~tLfV~NL----p~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~----~e~----A~~Al~--~l 402 (548)
..|||+|| |+.+++.+|+.+|+.| |.|.+|.++.|+.||.++|||||+|.+ +++ |..|+. .+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f----GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l 78 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY----GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHES 78 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT----SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh
Confidence 67999999 9999999999999999 999999999999999999999999996 333 788887 55
Q ss_pred C-CccCCeEEEEEeeec
Q 008928 403 N-LKLRDRELRLSHAQQ 418 (548)
Q Consensus 403 n-~~l~Gr~I~V~~Ak~ 418 (548)
+ ..|.|+.|+|.+-..
T Consensus 79 ng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 79 SGCFIMGFKFEVILNKH 95 (136)
T ss_dssp TCEEETTEEEEEEECCT
T ss_pred cCCeecCcEEEEEECcc
Confidence 6 999999999998653
No 327
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.8e-13 Score=116.99 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=69.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCC---CCCceEEEEEECCHHHHHHHHHHcCCccCCeE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM---RVGKGIAYVLFKTREAANLVIKRRNLKLRDRE 410 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~t---g~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~ 410 (548)
...++|||+|||+.+++++|+++|+.| |.|. +.++.+..+ |.++|||||+|.+.++|..||..++ .|+|+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~ 79 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRF----GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKL 79 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTT----CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhc----CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcE
Confidence 456899999999999999999999999 8999 888888777 7999999999999999999999884 578888
Q ss_pred EEEEeee
Q 008928 411 LRLSHAQ 417 (548)
Q Consensus 411 I~V~~Ak 417 (548)
|.|..+.
T Consensus 80 ~~~~~~~ 86 (114)
T 2dnl_A 80 YLCVSSP 86 (114)
T ss_dssp EEEECCS
T ss_pred EEeccCC
Confidence 8777554
No 328
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.1e-12 Score=119.74 Aligned_cols=78 Identities=17% Similarity=0.336 Sum_probs=72.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEe
Q 008928 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSH 415 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~ 415 (548)
++|||+|||+++++++|+++|+.| |.|..|.|+.+. ++.++|||||+|.+.++|..|+..++ ..|.|+.|.|.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 75 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVG----GPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW 75 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGG----SCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhc----CCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEE
Confidence 589999999999999999999999 899999999996 57899999999999999999997777 999999999999
Q ss_pred eecC
Q 008928 416 AQQN 419 (548)
Q Consensus 416 Ak~~ 419 (548)
+.+.
T Consensus 76 ~~~~ 79 (166)
T 3md3_A 76 AFQS 79 (166)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9764
No 329
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=7.3e-13 Score=116.64 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=68.3
Q ss_pred CCCccEEEE--eCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-Ccc---
Q 008928 333 YDIKKTVFV--GNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKL--- 406 (548)
Q Consensus 333 ~~~~~tLfV--~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l--- 406 (548)
..+.++||| +||++.+++++|+++|++| |.|..|.|+.+ +|||||+|.+.++|..|+..|| ..|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~f----G~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 91 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDD 91 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHH----SCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhc----CCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccc
Confidence 346789999 7799999999999999999 89999987643 7899999999999999999888 766
Q ss_pred --CCeEEEEEeeecC
Q 008928 407 --RDRELRLSHAQQN 419 (548)
Q Consensus 407 --~Gr~I~V~~Ak~~ 419 (548)
.|++|.|.|+...
T Consensus 92 lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 92 LGQKITLYLNFVEKV 106 (114)
T ss_dssp TSCEEECEEEEESCC
T ss_pred cCCCcEEEEEecccC
Confidence 6899999999864
No 330
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.38 E-value=4.9e-13 Score=117.28 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=63.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH-
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (548)
..++|||+|||+++++++|.++|+.||.|..|.|+. . |||||+|.+.++|+.||.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~-----------------------~-g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR-----------------------D-GTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT-----------------------T-SEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec-----------------------C-CEEEEEECCHHHHHHHHHH
Confidence 357899999999999999999999999999999832 1 799999999999999995
Q ss_pred hcceeecCce-----eEeecCCC
Q 008928 303 FNMAVIGGNH-----IRLDRACP 320 (548)
Q Consensus 303 lng~~~~gr~-----I~V~~a~~ 320 (548)
||+..|.|+. |.|....+
T Consensus 71 l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 71 LDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp HTTCBCCCTTSCCCBCEEEECC-
T ss_pred hCCCEECCcEeeeEEEEeccCCC
Confidence 9999999988 66666554
No 331
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.38 E-value=8.9e-13 Score=121.55 Aligned_cols=77 Identities=17% Similarity=0.332 Sum_probs=69.9
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
.++|||+|||+.+++++|.++|+.||.|..|.|+.++. +|.++|||||+|.+.++|..|+ .|
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA-----------------TGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT-----------------TCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC-----------------CCCcceEEEEEeCCHHHHHHHHHHc
Confidence 58999999999999999999999999999999966431 3457799999999999999999 59
Q ss_pred cceeecCceeEeecC
Q 008928 304 NMAVIGGNHIRLDRA 318 (548)
Q Consensus 304 ng~~~~gr~I~V~~a 318 (548)
||..|.|+.|.|.++
T Consensus 157 ~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEETTEECEEEEC
T ss_pred CCCEECCeEEEEEeC
Confidence 999999999999987
No 332
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.38 E-value=5.4e-13 Score=122.45 Aligned_cols=80 Identities=16% Similarity=0.400 Sum_probs=74.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLS 414 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~ 414 (548)
+.++|||+|||+++++++|+++|+.| |.|..|.|++++.+|.++|||||+|.+.++|..||.. ...|.|+.|.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKY----GTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTT----CCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccc
Confidence 46899999999999999999999999 9999999999999999999999999999999999985 478999999999
Q ss_pred eeecC
Q 008928 415 HAQQN 419 (548)
Q Consensus 415 ~Ak~~ 419 (548)
++.+.
T Consensus 77 ~~~~~ 81 (167)
T 2cjk_A 77 RAIPR 81 (167)
T ss_dssp ECCCH
T ss_pred cccch
Confidence 98653
No 333
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.38 E-value=7.5e-13 Score=110.15 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=66.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
..++|||+|||+.+++++|+++|..| .|..|.|. .++|||||+|.+.++|..|+..++ ..|.|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-----~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 72 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-----DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIV 72 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-----CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-----CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 45789999999999999999999998 47777774 468999999999999999999887 9999999999
Q ss_pred EeeecC
Q 008928 414 SHAQQN 419 (548)
Q Consensus 414 ~~Ak~~ 419 (548)
.|+...
T Consensus 73 ~~a~~~ 78 (88)
T 1wg1_A 73 QLQPTD 78 (88)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999764
No 334
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.38 E-value=1.3e-12 Score=122.03 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=67.8
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-H
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (548)
...+|||+|||+.+|+++|.++|+.||.|..|.|... ..+|||||+|.+.++|..|+ .
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---------------------~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---------------------NNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---------------------SSCEEEEEEESCHHHHHHHHHH
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---------------------CCCCEEEEEECCHHHHHHHHHH
Confidence 3467999999999999999999999999999998421 14589999999999999999 5
Q ss_pred hcceeecC--ceeEeecCCCc
Q 008928 303 FNMAVIGG--NHIRLDRACPP 321 (548)
Q Consensus 303 lng~~~~g--r~I~V~~a~~~ 321 (548)
|||..|.| +.|+|.++.+.
T Consensus 104 LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 104 LDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp STTBCSSSSCSCEEEEECSSS
T ss_pred hCCCEecCCCcEEEEEEecCC
Confidence 99999966 99999999764
No 335
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.37 E-value=9.9e-13 Score=125.74 Aligned_cols=81 Identities=22% Similarity=0.448 Sum_probs=72.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
..++|||+|||+++++++|+++|..| |.|..|.|+++..+|.++|||||+|.+.++|..||..++ ..|.|+.|.|
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPF----GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhC----CCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 45799999999999999999999999 899999999998899999999999999999999999776 9999999999
Q ss_pred EeeecC
Q 008928 414 SHAQQN 419 (548)
Q Consensus 414 ~~Ak~~ 419 (548)
.++...
T Consensus 103 ~~~~~~ 108 (216)
T 2qfj_A 103 GRPSNI 108 (216)
T ss_dssp ECCSCC
T ss_pred ecCCCc
Confidence 887643
No 336
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.37 E-value=6.7e-13 Score=109.51 Aligned_cols=74 Identities=20% Similarity=0.489 Sum_probs=65.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCC-------CeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-Ccc
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES-------SVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKL 406 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G-------~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l 406 (548)
..++|||+|||+.+++++|+++|..|+...| .|..|.++.+ +|||||+|.+.++|..|+ .++ ..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 5689999999999999999999999832224 7999988765 789999999999999999 777 999
Q ss_pred CCeEEEEEe
Q 008928 407 RDRELRLSH 415 (548)
Q Consensus 407 ~Gr~I~V~~ 415 (548)
.|+.|+|.+
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 337
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.36 E-value=1.9e-12 Score=122.12 Aligned_cols=82 Identities=17% Similarity=0.299 Sum_probs=73.0
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+.+++++|.++|+.||.|..|.|+.++. +|.++|||||+|.+.++|..|+.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-----------------~~~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA-----------------TGLSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT-----------------TCSEEEEEEEEESSSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC-----------------CCCcceEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999999999999999965431 34577999999999999999995
Q ss_pred -hcceeecCceeEeecCCCc
Q 008928 303 -FNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~~~ 321 (548)
|||..|.|+.|.|.++.+.
T Consensus 175 ~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 175 GLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp HHTTCEETTEECEEEESCCC
T ss_pred HcCCCEECCEEEEEEECCCC
Confidence 9999999999999999764
No 338
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.36 E-value=2.9e-12 Score=111.04 Aligned_cols=81 Identities=14% Similarity=0.040 Sum_probs=72.0
Q ss_pred CCccEEEEeCCCC-----CCCHHHHHHHHhccCCCCCCeEEEEEeecCCC-CCCceEEEEEECCHHHHHHHHHHcC-Ccc
Q 008928 334 DIKKTVFVGNLPF-----DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM-RVGKGIAYVLFKTREAANLVIKRRN-LKL 406 (548)
Q Consensus 334 ~~~~tLfV~NLp~-----~~teedL~~~F~~~g~~~G~I~~VrI~~d~~t-g~srG~AFV~F~~~e~A~~Al~~ln-~~l 406 (548)
.++++|+|.||.. +.++++|+++|++| |.|..|.|+.++.+ +.++|||||+|.+.++|..|+..|| ..|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~----G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~ 81 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY----GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF 81 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG----SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc----CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 4678999999963 23789999999999 99999999998754 6899999999999999999999888 999
Q ss_pred CCeEEEEEeeec
Q 008928 407 RDRELRLSHAQQ 418 (548)
Q Consensus 407 ~Gr~I~V~~Ak~ 418 (548)
.||.|.|.|+.+
T Consensus 82 ~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 82 GGRVVKACFYNL 93 (105)
T ss_dssp TTEECEEEECCH
T ss_pred CCcEEEEEEcCH
Confidence 999999999975
No 339
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.36 E-value=2.7e-12 Score=115.51 Aligned_cols=75 Identities=21% Similarity=0.218 Sum_probs=66.7
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcce-EEEEecCHHHHHHHH-H
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH-AYIVFKSEQSTEAAL-A 302 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~-AFV~F~s~e~A~~Al-~ 302 (548)
-..|||+||++.+|+++|.++|+.||.|.+|.|... .+|| |||+|.+.++|..|+ .
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----------------------~~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----------------------NNQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----------------------TTEEEEEEEESCHHHHHHHHHH
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----------------------CCCcEEEEEECCHHHHHHHHHH
Confidence 357889999999999999999999999999988431 2467 999999999999999 6
Q ss_pred hcceeecC--ceeEeecCCCc
Q 008928 303 FNMAVIGG--NHIRLDRACPP 321 (548)
Q Consensus 303 lng~~~~g--r~I~V~~a~~~ 321 (548)
|||..|.| +.|+|+++.+.
T Consensus 86 LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 86 LDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp HTTCEEETTEEEEEEEECSCS
T ss_pred cCCCeecCCCcEEEEEecCCC
Confidence 99999988 89999999764
No 340
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=2.7e-12 Score=114.66 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=64.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcce-EEEEecCHHHHHHHH-Hh
Q 008928 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH-AYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~-AFV~F~s~e~A~~Al-~l 303 (548)
..|||+|||+.+|+++|.++|+.||.|..|+|.. ..|| |||+|.+.++|..|+ .|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-----------------------~~Gf~aFVef~~~~~A~~A~~~L 82 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-----------------------RNGIQAMVEFESVLCAQKAKAAL 82 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-----------------------SSSEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-----------------------CCCCEEEEEECCHHHHHHHHHHh
Confidence 3478999999999999999999999999999832 1275 999999999999999 59
Q ss_pred cceeecC--ceeEeecCCCcc
Q 008928 304 NMAVIGG--NHIRLDRACPPR 322 (548)
Q Consensus 304 ng~~~~g--r~I~V~~a~~~~ 322 (548)
||..|.| +.|.|.++.+..
T Consensus 83 nG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 83 NGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp TTCCCBTTBSEEEEECCSCSC
T ss_pred CCCEecCCCeEEEEEEecCCc
Confidence 9999988 699999997653
No 341
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.35 E-value=3.3e-12 Score=119.26 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=69.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCC--eEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRD--REL 411 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~G--r~I 411 (548)
...+|||+||++.+++++|+++|+.| |.|..|.|+.+. ++|||||+|.+.++|..|+..|+ ..|.| +.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~f----G~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKF----GTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHH----SCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhc----CCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 34679999999999999999999999 999999987542 57899999999999999999988 88855 999
Q ss_pred EEEeeecCC
Q 008928 412 RLSHAQQNC 420 (548)
Q Consensus 412 ~V~~Ak~~~ 420 (548)
+|.|+++..
T Consensus 117 ~V~~Ak~~~ 125 (164)
T 1sjr_A 117 RIDFSKLTS 125 (164)
T ss_dssp EEEECSSSS
T ss_pred EEEEecCCc
Confidence 999999864
No 342
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.35 E-value=3.3e-12 Score=114.92 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=68.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceE-EEEEECCHHHHHHHHHHcC-CccCC--eEE
Q 008928 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI-AYVLFKTREAANLVIKRRN-LKLRD--REL 411 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~-AFV~F~~~e~A~~Al~~ln-~~l~G--r~I 411 (548)
--.|||+||++.+|+++|+++|+.| |.|..|.|+.+ .+|| |||+|.+.++|..|+..|+ ..|.| +.|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~y----G~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKF----GTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTS----SCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCc----CCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 4578899999999999999999999 99999988765 2677 9999999999999999888 88888 999
Q ss_pred EEEeeecCC
Q 008928 412 RLSHAQQNC 420 (548)
Q Consensus 412 ~V~~Ak~~~ 420 (548)
+|.|+++..
T Consensus 99 rI~~ak~~~ 107 (130)
T 3zzy_A 99 RIDFSKLTS 107 (130)
T ss_dssp EEEECSCSS
T ss_pred EEEecCCCc
Confidence 999999764
No 343
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=113.83 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=62.5
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+++|+++|+++|+.||.|. +.++.+..+. ..|.++|||||+|.+.++|+.||.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~--------------~~g~~~G~aFV~f~~~~~a~~Ai~ 70 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESK--------------SYFPPKGYAFLLFQEESSVQALID 70 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSC--------------CCSCTTSEEEECCSSHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCC--------------CCCCcccEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999998 7664322110 115688999999999999999994
Q ss_pred -hcceeecCceeEeecC
Q 008928 303 -FNMAVIGGNHIRLDRA 318 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a 318 (548)
|+ .+.|+.|.|..+
T Consensus 71 ~~~--~~~G~~~~~~~~ 85 (114)
T 2dnl_A 71 ACL--EEDGKLYLCVSS 85 (114)
T ss_dssp HSE--EETTEEEEEECC
T ss_pred hhh--hcCCcEEEeccC
Confidence 63 377887777654
No 344
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.34 E-value=3.1e-12 Score=117.88 Aligned_cols=81 Identities=23% Similarity=0.371 Sum_probs=72.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCC--CCceEEEEEECCHHHHHHHHHHcC-CccC---C
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR--VGKGIAYVLFKTREAANLVIKRRN-LKLR---D 408 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg--~srG~AFV~F~~~e~A~~Al~~ln-~~l~---G 408 (548)
..++|||+|||+++++++|+++|..| |.|..|.|+++..++ .++|||||+|.+.++|..|+..++ ..+. +
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQY----GAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH 77 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc
Confidence 35899999999999999999999999 899999999998876 899999999999999999998877 5554 5
Q ss_pred eEEEEEeeecC
Q 008928 409 RELRLSHAQQN 419 (548)
Q Consensus 409 r~I~V~~Ak~~ 419 (548)
+.|.|.++.+.
T Consensus 78 ~~~~~~~~~~~ 88 (175)
T 3nmr_A 78 HPIQMKPADSE 88 (175)
T ss_dssp SCCEEEECGGG
T ss_pred cceEEcccccc
Confidence 88888887754
No 345
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.3e-12 Score=109.09 Aligned_cols=70 Identities=24% Similarity=0.263 Sum_probs=61.6
Q ss_pred cEEEEcCCCCCCcHHH----HHHHhhhc-CCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHH
Q 008928 226 RTIFVGNLPLKVKKKT----LIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (548)
Q Consensus 226 rtVfVgNLP~~~tee~----L~~~Fs~f-G~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~A 300 (548)
++|||+|||+.+++++ |.++|+.| |.|.+|. .|+|||+|.+.++|..|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------------------------gG~AfV~F~~~esA~~A 62 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------------------------GCSAILRFINQDSAERA 62 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------------------------TTCEEEEESSHHHHHHH
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------------------------cCEEEEEECCHHHHHHH
Confidence 3499999999999988 55899999 5997761 18999999999999999
Q ss_pred H-HhcceeecCceeEeecCCCcc
Q 008928 301 L-AFNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 301 l-~lng~~~~gr~I~V~~a~~~~ 322 (548)
+ .|+|..|.|+.|+|.++....
T Consensus 63 ~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 63 QKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp HHHHTTCCSSSSCCEEESSCCSC
T ss_pred HHHhcCCccCCceEEEEecCCCc
Confidence 9 699999999999999997643
No 346
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=4.4e-12 Score=113.29 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=66.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceE-EEEEECCHHHHHHHHHHcC-CccCC--eEEE
Q 008928 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI-AYVLFKTREAANLVIKRRN-LKLRD--RELR 412 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~-AFV~F~~~e~A~~Al~~ln-~~l~G--r~I~ 412 (548)
..|||+||++.+++++|+++|+.| |.|..|.|+.. .|| |||+|.+.++|..|+..|+ ..|.| +.|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~y----G~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPV----GKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTT----SCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhc----CCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 457899999999999999999999 99999998652 276 9999999999999999888 88877 6999
Q ss_pred EEeeecCCC
Q 008928 413 LSHAQQNCT 421 (548)
Q Consensus 413 V~~Ak~~~~ 421 (548)
|.||++...
T Consensus 96 V~~Ak~~~l 104 (124)
T 2e5i_A 96 IEYARPTRL 104 (124)
T ss_dssp EECCSCSCC
T ss_pred EEEecCCcc
Confidence 999998643
No 347
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.33 E-value=2.4e-12 Score=114.19 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=66.8
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (548)
...++|||+|| ++|+++|..+|+.||.|..|.|. .++|||||+|.+.++|..||
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----------------------~~kg~aFV~f~~~~~A~~Ai~ 91 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----------------------PPRNCAFVTYEKMESADQAVA 91 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----------------------TTTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----------------------CCCCEEEEEECCHHHHHHHHH
Confidence 34689999996 79999999999999999999983 16699999999999999999
Q ss_pred HhcceeecCceeEeecCCCc
Q 008928 302 AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 302 ~lng~~~~gr~I~V~~a~~~ 321 (548)
.||+..|.|+.|.|.++.+.
T Consensus 92 ~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 92 ELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp HHTTCBCSSCBCEEEECCSS
T ss_pred HhCCCEECCeEEEEEEeCCC
Confidence 69999999999999999754
No 348
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.33 E-value=2.8e-12 Score=123.96 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=70.3
Q ss_pred CccEEEEeCCC-CCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 335 IKKTVFVGNLP-FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 335 ~~~tLfV~NLp-~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
+.++|||+||| +.+++++|+++|+.| |.|..|.|+.+ .+|||||+|.+.++|..||..|| ..|.|+.|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~----G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 73 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLY----GNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMN 73 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTT----SCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc----CCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEE
Confidence 46899999999 899999999999999 99999999876 37999999999999999999887 999999999
Q ss_pred EEeeecC
Q 008928 413 LSHAQQN 419 (548)
Q Consensus 413 V~~Ak~~ 419 (548)
|.|++..
T Consensus 74 v~~s~~~ 80 (205)
T 3tyt_A 74 VCVSKQP 80 (205)
T ss_dssp EEECSCS
T ss_pred EEEccCC
Confidence 9999754
No 349
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.33 E-value=2.3e-12 Score=127.62 Aligned_cols=111 Identities=19% Similarity=0.237 Sum_probs=78.7
Q ss_pred HHHhcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCC---------CHHHHHHHHhccCCCCCCeEEE
Q 008928 300 ALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDV---------KDEEIYQLFCGLNDLESSVEAV 370 (548)
Q Consensus 300 Al~lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~---------teedL~~~F~~~g~~~G~I~~V 370 (548)
+|..+...+.|+.....+..... ...+.....++|||+||+..+ ++++|+.+|+.| |.|..|
T Consensus 103 ~~~~~~~D~fGr~k~~~~~d~~~-----g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f----G~I~~v 173 (240)
T 3u1l_A 103 ALRTEVLDCFGREKFADYREDMG-----GIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL----GDIDRI 173 (240)
T ss_dssp HHHCSSBCTTSSBCGGGTC--------------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT----SCEEEE
T ss_pred cccccCcccccchhcccchhccc-----CcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHcc----CCEEEE
Confidence 33335555667765444432211 112234467899999999998 799999999999 999999
Q ss_pred EEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-Ccc------------CCeEEEEEeeecCCCCCCC
Q 008928 371 RVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKL------------RDRELRLSHAQQNCTPSKR 425 (548)
Q Consensus 371 rI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l------------~Gr~I~V~~Ak~~~~~~~r 425 (548)
+|+.+ +|||||+|.+.++|+.|+..|+ ..| .|+.|.|.||.+...|..+
T Consensus 174 ~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp~~~ 235 (240)
T 3u1l_A 174 RYVES------KNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDPAAQ 235 (240)
T ss_dssp EEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--------
T ss_pred EEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCHHHh
Confidence 99864 7999999999999999998887 777 8999999999987665443
No 350
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.32 E-value=2.2e-12 Score=115.29 Aligned_cols=77 Identities=17% Similarity=0.096 Sum_probs=66.2
Q ss_pred cEEEEcCC----CCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecC----HHH-
Q 008928 226 RTIFVGNL----PLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS----EQS- 296 (548)
Q Consensus 226 rtVfVgNL----P~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s----~e~- 296 (548)
..|||+|| |+.+++.+|+++|+.||+|.+|.++.|+. +|.++|||||+|.+ ++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~-----------------Tg~slGfgfVef~d~~g~~d~a 65 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPN-----------------SALPLHVYLIKYASSDGKINDA 65 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTT-----------------TCCEEEEEEEECC------CCH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----------------CCceeeEEEEEECCCCCCcchH
Confidence 57999999 99999999999999999999999988874 45678999999996 433
Q ss_pred ---HHHHHH---hcceeecCceeEeecCC
Q 008928 297 ---TEAALA---FNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 297 ---A~~Al~---lng~~~~gr~I~V~~a~ 319 (548)
|..|+. ++|..|.|+.|+|.+-.
T Consensus 66 ~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 66 AKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred HHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 677764 69999999999999864
No 351
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.30 E-value=1e-11 Score=107.65 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=68.3
Q ss_pred cccEEEEcCCCC-----CCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHH
Q 008928 224 LLRTIFVGNLPL-----KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (548)
Q Consensus 224 ~~rtVfVgNLP~-----~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~ 298 (548)
.+++|+|.||.. +.++++|+++|++||.|.+|.|+.++.. ++.++|||||+|.+.++|.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~----------------~~~~~G~~FV~f~~~~~A~ 70 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGA----------------PDDEAVRIFLEFERVESAI 70 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSC----------------CTTTSEEEEEEESSHHHHH
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCC----------------CCCCcEEEEEEECCHHHHH
Confidence 468999999963 2478999999999999999999664311 1347799999999999999
Q ss_pred HHH-HhcceeecCceeEeecCCC
Q 008928 299 AAL-AFNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 299 ~Al-~lng~~~~gr~I~V~~a~~ 320 (548)
.|+ .|||..|.|+.|.|.++..
T Consensus 71 ~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 71 KAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHCCCEECCcEEEEEEcCH
Confidence 999 6999999999999999864
No 352
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.30 E-value=3e-12 Score=126.69 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=68.4
Q ss_pred CCcccEEEEcCCCCCC---------cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEec
Q 008928 222 GKLLRTIFVGNLPLKV---------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~---------tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~ 292 (548)
....++|||+|||..+ ++++|..+|+.||.|.+|+|+. ++|||||+|.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----------------------~kG~AFV~F~ 187 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----------------------SKNCGFVKFK 187 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEES
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----------------------CCCEEEEEeC
Confidence 3457899999999998 7999999999999999999842 4699999999
Q ss_pred CHHHHHHHH-Hhcceee------------cCceeEeecCCC
Q 008928 293 SEQSTEAAL-AFNMAVI------------GGNHIRLDRACP 320 (548)
Q Consensus 293 s~e~A~~Al-~lng~~~------------~gr~I~V~~a~~ 320 (548)
+.++|+.|+ .|++..| .|+.|.|.|+..
T Consensus 188 ~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 188 YQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp SHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred CHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 999999999 6999999 899999999974
No 353
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.30 E-value=7.7e-12 Score=125.20 Aligned_cols=82 Identities=21% Similarity=0.378 Sum_probs=74.0
Q ss_pred cCCCccEEEEeCCCCCCCHHHHH----HHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-Ccc
Q 008928 332 LYDIKKTVFVGNLPFDVKDEEIY----QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKL 406 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~~teedL~----~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l 406 (548)
...+.++|||+|||+.+++++|+ ++|+.| |.|..|.|+. ++.++|||||+|.+.++|..||..++ ..|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~----G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQF----GQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF 77 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhcc----CCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee
Confidence 34568999999999999999966 899999 9999999886 57899999999999999999998887 999
Q ss_pred CCeEEEEEeeecCC
Q 008928 407 RDRELRLSHAQQNC 420 (548)
Q Consensus 407 ~Gr~I~V~~Ak~~~ 420 (548)
.|+.|.|.|+....
T Consensus 78 ~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 78 YDKPMRIQYAKTDS 91 (282)
T ss_pred CCcEEEEEEeccCc
Confidence 99999999997653
No 354
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.29 E-value=5.4e-12 Score=111.93 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=67.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELR 412 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~ 412 (548)
...++|||+|| ++++++|+++|+.| |.|..|.|+ .++|||||+|.+.++|..||..++ ..|.|+.|.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~----G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 104 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 104 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTT----CCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHcc----CCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 45789999996 69999999999999 899999886 458999999999999999998877 999999999
Q ss_pred EEeeecCC
Q 008928 413 LSHAQQNC 420 (548)
Q Consensus 413 V~~Ak~~~ 420 (548)
|.|+.+..
T Consensus 105 V~~a~~~~ 112 (121)
T 2bz2_A 105 VNIARKQP 112 (121)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 99998753
No 355
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.28 E-value=1e-11 Score=115.03 Aligned_cols=76 Identities=29% Similarity=0.323 Sum_probs=66.7
Q ss_pred CcccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 223 ~~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|||+|||+.+|+++|+++|+.||.|..+ . .++.++|||||+|.+.++|..||.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~---------------------~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-S---------------------QDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-C---------------------SSSSCCSEEEEECSSHHHHHHHHH
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-c---------------------CCCCCceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999987655 1 134577999999999999999995
Q ss_pred -hcceeecCceeEeecCCC
Q 008928 303 -FNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 303 -lng~~~~gr~I~V~~a~~ 320 (548)
|||..|.|+.|.|.++.+
T Consensus 155 ~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp HHTEEEETTEEEEEEECSS
T ss_pred HhCCCEECCeEEEEEecCC
Confidence 999999999999999864
No 356
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.24 E-value=1.7e-11 Score=119.64 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=72.5
Q ss_pred CCCccEEEEeCCCC-CCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeE
Q 008928 333 YDIKKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRE 410 (548)
Q Consensus 333 ~~~~~tLfV~NLp~-~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~ 410 (548)
..+.++|||+|||+ .+++++|+++|+.| |.|..|.|+.+. +|||||+|.+.++|..||..++ ..|.|+.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~----G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVY----GDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHH----TCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 34678999999999 99999999999999 899999999885 7899999999999999998776 9999999
Q ss_pred EEEEeeecCC
Q 008928 411 LRLSHAQQNC 420 (548)
Q Consensus 411 I~V~~Ak~~~ 420 (548)
|.|.|+.+..
T Consensus 102 l~v~~a~~~~ 111 (229)
T 2adc_A 102 IRITLSKHQN 111 (229)
T ss_dssp CEEECCSCCC
T ss_pred EEEEEecCcc
Confidence 9999998653
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=5.8e-11 Score=103.40 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=66.3
Q ss_pred CCcccEEEEcCCCCCC-----------cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEE
Q 008928 222 GKLLRTIFVGNLPLKV-----------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIV 290 (548)
Q Consensus 222 ~~~~rtVfVgNLP~~~-----------tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~ 290 (548)
....++|+|.||.... ++++|+++|++||.|..|.| .+. .++|||||+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--------------------~~~G~afV~ 70 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--------------------HPDGVASVS 70 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--------------------CTTCEEEEE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--------------------CCCEEEEEE
Confidence 3457899999994433 26899999999999999966 211 156999999
Q ss_pred ecCHHHHHHHH-HhcceeecCceeEeecCCCc
Q 008928 291 FKSEQSTEAAL-AFNMAVIGGNHIRLDRACPP 321 (548)
Q Consensus 291 F~s~e~A~~Al-~lng~~~~gr~I~V~~a~~~ 321 (548)
|.+.++|..|+ .|||..|.|+.|.|.++.+.
T Consensus 71 f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 71 FRDPEEADYCIQTLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp CSCHHHHHHHHHHSTTCEETTEECEEEECCSC
T ss_pred ECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 99999999999 69999999999999998764
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=7.4e-11 Score=102.71 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=67.7
Q ss_pred CCCccEEEEeCCCCCCC-----------HHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHH
Q 008928 333 YDIKKTVFVGNLPFDVK-----------DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKR 401 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~t-----------eedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ 401 (548)
..++++|+|.||..... +++|+++|++| |.|..|.| .+. .++|||||+|.+.++|..||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~----G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF----GQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT----SCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc----CCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHH
Confidence 34679999999944332 58999999999 89999955 553 3799999999999999999998
Q ss_pred cC-CccCCeEEEEEeeecC
Q 008928 402 RN-LKLRDRELRLSHAQQN 419 (548)
Q Consensus 402 ln-~~l~Gr~I~V~~Ak~~ 419 (548)
|+ ..|.|+.|.|.|+.+.
T Consensus 84 lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 84 LDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp STTCEETTEECEEEECCSC
T ss_pred cCCCEECCcEEEEEEeCCC
Confidence 88 9999999999999875
No 359
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.19 E-value=1.8e-11 Score=115.94 Aligned_cols=76 Identities=22% Similarity=0.352 Sum_probs=70.4
Q ss_pred ccEEEEeCCCC-CCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEE
Q 008928 336 KKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRL 413 (548)
Q Consensus 336 ~~tLfV~NLp~-~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V 413 (548)
.++|||+|||+ .+++++|+++|+.| |.|..|.|+.+. +|||||+|.+.++|..||..++ ..|.|+.|.|
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~----G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 73 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVY----GDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 73 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTT----CCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEE
Confidence 57999999999 99999999999999 899999999874 7899999999999999998776 9999999999
Q ss_pred EeeecCC
Q 008928 414 SHAQQNC 420 (548)
Q Consensus 414 ~~Ak~~~ 420 (548)
.|+.+..
T Consensus 74 ~~a~~~~ 80 (198)
T 1qm9_A 74 TLSKHQN 80 (198)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998763
No 360
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.19 E-value=4e-11 Score=119.41 Aligned_cols=77 Identities=27% Similarity=0.515 Sum_probs=70.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
....++|||+|||+++|+++|+.+|+.| |.|..|.|.++ +|||||+|.+.++|..||..++ ..|.|+.|
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 88 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERY----GEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPL 88 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGG----CCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCcee
Confidence 4567899999999999999999999999 89999998654 7899999999999999998776 99999999
Q ss_pred EEEeeecC
Q 008928 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|.|+.+.
T Consensus 89 ~v~~a~~~ 96 (261)
T 3sde_A 89 RIRFATHG 96 (261)
T ss_dssp EEEECCCS
T ss_pred EeeecccC
Confidence 99999753
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.19 E-value=4.2e-11 Score=103.68 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=69.9
Q ss_pred CccEEEEeCC--CCCCC--------HHHHHHHHhccCCCCCCeEEEEEeecCCC--CCCceEEEEEECCHHHHHHHHHHc
Q 008928 335 IKKTVFVGNL--PFDVK--------DEEIYQLFCGLNDLESSVEAVRVIRHPHM--RVGKGIAYVLFKTREAANLVIKRR 402 (548)
Q Consensus 335 ~~~tLfV~NL--p~~~t--------eedL~~~F~~~g~~~G~I~~VrI~~d~~t--g~srG~AFV~F~~~e~A~~Al~~l 402 (548)
++++|+|.|| |..+. +++|++.|++| |.|..|.|+++..+ +.++|||||+|.+.++|.+|+..|
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~----G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~l 79 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY----GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL 79 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT----SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc----CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHh
Confidence 5789999998 33443 37999999999 99999999998754 368999999999999999999888
Q ss_pred C-CccCCeEEEEEeeec
Q 008928 403 N-LKLRDRELRLSHAQQ 418 (548)
Q Consensus 403 n-~~l~Gr~I~V~~Ak~ 418 (548)
| ..|.||.|.|.|+.+
T Consensus 80 nG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 80 TGRKFANRVVVTKYCDP 96 (105)
T ss_dssp TTCEETTEECEEEEECH
T ss_pred CCCEeCCCEEEEEEeCH
Confidence 8 999999999999864
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.14 E-value=1e-10 Score=103.43 Aligned_cols=80 Identities=14% Similarity=0.088 Sum_probs=69.8
Q ss_pred CccEEEEeCCCC--CC---CHHHHHHHHhccCCCCCCeEEEEEeecCC----CCCCceEEEEEECCHHHHHHHHHHcC-C
Q 008928 335 IKKTVFVGNLPF--DV---KDEEIYQLFCGLNDLESSVEAVRVIRHPH----MRVGKGIAYVLFKTREAANLVIKRRN-L 404 (548)
Q Consensus 335 ~~~tLfV~NLp~--~~---teedL~~~F~~~g~~~G~I~~VrI~~d~~----tg~srG~AFV~F~~~e~A~~Al~~ln-~ 404 (548)
++++|+|.||-. ++ .++||++.|++| |.|..|.|+++.. ++.++|||||+|.+.++|..|+..|| .
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~----G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr 94 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR 94 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT----SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc----CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC
Confidence 578999999832 22 368999999999 9999999999864 45778999999999999999999888 9
Q ss_pred ccCCeEEEEEeeec
Q 008928 405 KLRDRELRLSHAQQ 418 (548)
Q Consensus 405 ~l~Gr~I~V~~Ak~ 418 (548)
.|.||.|.|.|+..
T Consensus 95 ~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 95 WFAGRKVVAEVYDQ 108 (118)
T ss_dssp EETTEECEEEEECH
T ss_pred EECCcEEEEEEcCh
Confidence 99999999999864
No 363
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.13 E-value=2.5e-11 Score=104.90 Aligned_cols=71 Identities=20% Similarity=0.188 Sum_probs=62.4
Q ss_pred EeCCCCCCCHHHHHHHH------------hccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccC
Q 008928 341 VGNLPFDVKDEEIYQLF------------CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLR 407 (548)
Q Consensus 341 V~NLp~~~teedL~~~F------------~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~ 407 (548)
+.|||+.+++++|+++| ++| |.|..|.|+++. ++.++|||||+|.+.++|..|+..|| ..|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~----G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY----GEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC----CceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 56777777877777666 999 999999999985 48899999999999999999998887 9999
Q ss_pred CeEEEEEee
Q 008928 408 DRELRLSHA 416 (548)
Q Consensus 408 Gr~I~V~~A 416 (548)
||.|.|.|+
T Consensus 95 Gr~i~v~~s 103 (104)
T 1jmt_A 95 GQPIHAELS 103 (104)
T ss_dssp TEECCEEEC
T ss_pred CEEEEEEEc
Confidence 999999986
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.11 E-value=3.4e-11 Score=103.98 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=59.9
Q ss_pred EcCCCCCCcHHHHHHHh------------hhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHH
Q 008928 230 VGNLPLKVKKKTLIKEF------------IKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (548)
Q Consensus 230 VgNLP~~~tee~L~~~F------------s~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A 297 (548)
+.|||+.+++++|.++| ++||.|.+|.|+.+. .+.++|||||+|.+.++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~------------------~~~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL------------------GDHLVGNVYVKFRREEDA 81 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS------------------SSSSEEEEEEEESCHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC------------------CCCccEEEEEEECCHHHH
Confidence 56777888888877776 999999999995432 234789999999999999
Q ss_pred HHHH-HhcceeecCceeEeecC
Q 008928 298 EAAL-AFNMAVIGGNHIRLDRA 318 (548)
Q Consensus 298 ~~Al-~lng~~~~gr~I~V~~a 318 (548)
.+|+ .|||..|.|+.|.|.++
T Consensus 82 ~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 82 EKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHCCCEECCEEEEEEEc
Confidence 9999 69999999999999886
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.10 E-value=1.7e-10 Score=99.87 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=66.6
Q ss_pred cccEEEEcCC--CCCC--------cHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecC
Q 008928 224 LLRTIFVGNL--PLKV--------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (548)
Q Consensus 224 ~~rtVfVgNL--P~~~--------tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s 293 (548)
++++|+|.|| |..+ .+++|+++|++||.|.+|.|+.+..+ +.+.++|||||+|.+
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~---------------~~~~~~G~~fV~f~~ 68 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDG---------------VEVPGCGKIFVEFTS 68 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTT---------------BCCTTTTEEEEEESS
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCC---------------CCcCCcEEEEEEECC
Confidence 4689999998 4444 34799999999999999999554311 112467999999999
Q ss_pred HHHHHHHH-HhcceeecCceeEeecCC
Q 008928 294 EQSTEAAL-AFNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 294 ~e~A~~Al-~lng~~~~gr~I~V~~a~ 319 (548)
.++|.+|+ .|||..|.|+.|.|.++.
T Consensus 69 ~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 69 VFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 99999999 699999999999999875
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.10 E-value=2.4e-10 Score=101.11 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=67.9
Q ss_pred cccEEEEcCCCC--C---CcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHH
Q 008928 224 LLRTIFVGNLPL--K---VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (548)
Q Consensus 224 ~~rtVfVgNLP~--~---~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~ 298 (548)
.+++|+|.||-. + -.+++|+++|++||.|.+|.|+.+...... ++.++|||||+|.+.++|.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~-------------~~~~~G~~FV~F~~~e~A~ 85 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEE-------------DAEIIVKIFVEFSIASETH 85 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSST-------------TCEEEEEEEEEESSHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCccc-------------CCcceEEEEEEECCHHHHH
Confidence 358999999942 2 247899999999999999999776532111 2236799999999999999
Q ss_pred HHH-HhcceeecCceeEeecCC
Q 008928 299 AAL-AFNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 299 ~Al-~lng~~~~gr~I~V~~a~ 319 (548)
+|+ .|||..|.|+.|.|.++.
T Consensus 86 ~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 86 KAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHCCCEECCcEEEEEEcC
Confidence 999 699999999999999875
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.1e-09 Score=93.91 Aligned_cols=65 Identities=22% Similarity=0.215 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEEEEEeeecCC
Q 008928 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDRELRLSHAQQNC 420 (548)
Q Consensus 346 ~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I~V~~Ak~~~ 420 (548)
..+++++|+++|++| |.|..|.|+ +.++|||||+|.+.++|..||..++ .+.|++|+|.|+.+..
T Consensus 27 ~~~te~~L~~~F~~~----G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY----GEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-GLVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTT----SCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-BCSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhc----CCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-CCCCCeEEEEEccCCC
Confidence 568999999999999 899999998 3579999999999999999998854 4679999999998753
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.3e-09 Score=91.02 Aligned_cols=75 Identities=15% Similarity=0.117 Sum_probs=60.7
Q ss_pred ccEEEEcCCC-------CCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHH
Q 008928 225 LRTIFVGNLP-------LKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (548)
Q Consensus 225 ~rtVfVgNLP-------~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A 297 (548)
...|.|.-.+ ..+++++|+++|++||.|..|.|+. .++|||||+|.+.++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~----------------------~~rGfaFVeF~~~~~A 67 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS----------------------KKPGTAVVEFATVKAA 67 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES----------------------SSSSEEEEEESCHHHH
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc----------------------CCCCEEEEEECCHHHH
Confidence 3466666554 4689999999999999999999841 2679999999999999
Q ss_pred HHHHHhcceeecCceeEeecCCCcc
Q 008928 298 EAALAFNMAVIGGNHIRLDRACPPR 322 (548)
Q Consensus 298 ~~Al~lng~~~~gr~I~V~~a~~~~ 322 (548)
..||.. +..+.|+.|.|.++.++.
T Consensus 68 ~~Ai~~-~~~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 68 ELAVQN-EVGLVDNPLKISWLEGQP 91 (100)
T ss_dssp HHHHHT-CCBCSSSBCEEECSSCCC
T ss_pred HHHHHh-cCCCCCCeEEEEEccCCC
Confidence 999964 344689999999987543
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.96 E-value=1.1e-09 Score=113.90 Aligned_cols=75 Identities=16% Similarity=0.272 Sum_probs=63.5
Q ss_pred CCcccEEEEcC--CCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHH
Q 008928 222 GKLLRTIFVGN--LPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (548)
Q Consensus 222 ~~~~rtVfVgN--LP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~ 299 (548)
.....+|||+| |++.+|+++|.++|++||.|.+|.|.. ++|||||+|.+.++|++
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----------------------~kgfaFV~f~~~~~A~~ 71 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKR 71 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----------------------TCSEEEEEESSHHHHHH
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHH
Confidence 44568999999 588999999999999999999987721 45899999999999999
Q ss_pred HH-Hhcceeec---Cc--eeEeecCC
Q 008928 300 AL-AFNMAVIG---GN--HIRLDRAC 319 (548)
Q Consensus 300 Al-~lng~~~~---gr--~I~V~~a~ 319 (548)
|+ .|||..+. |+ .|.|.++.
T Consensus 72 Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 72 AYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp HHHHTTTCEEECTTSCEEECEEEECS
T ss_pred HHHHhCCCccccccCCceEEEEEEee
Confidence 99 59999884 45 67777764
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.92 E-value=1.8e-09 Score=112.14 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=64.2
Q ss_pred CCCccEEEEeC--CCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-Ccc---
Q 008928 333 YDIKKTVFVGN--LPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKL--- 406 (548)
Q Consensus 333 ~~~~~tLfV~N--Lp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l--- 406 (548)
..++.+|||+| |++.+++++|+++|++| |.|..|.++. ++|||||+|.+.++|..||+.|| ..+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~----G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTT----SCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhc----CCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 45688999999 57899999999999999 8999887753 47999999999999999999988 555
Q ss_pred CCe--EEEEEeee
Q 008928 407 RDR--ELRLSHAQ 417 (548)
Q Consensus 407 ~Gr--~I~V~~Ak 417 (548)
.|+ .|.|.|+.
T Consensus 85 ~g~~~~ly~~~~~ 97 (345)
T 3tht_A 85 LGQKITLYLNFVE 97 (345)
T ss_dssp TSCEEECEEEECS
T ss_pred cCCceEEEEEEee
Confidence 355 68888884
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.89 E-value=3.5e-09 Score=93.01 Aligned_cols=77 Identities=10% Similarity=0.059 Sum_probs=65.4
Q ss_pred CccEEEEeCCCCCC----------CHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-
Q 008928 335 IKKTVFVGNLPFDV----------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN- 403 (548)
Q Consensus 335 ~~~tLfV~NLp~~~----------teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln- 403 (548)
++++|.|.||=... .++||++.|++| |.|..|.|.++. ++|||||+|.+.++|..|+..||
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf----G~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG 77 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH----GGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHG 77 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT----TCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc----CCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCC
Confidence 57889999983322 146899999999 999999987663 58999999999999999999888
Q ss_pred CccCCeEEEEEeeecC
Q 008928 404 LKLRDRELRLSHAQQN 419 (548)
Q Consensus 404 ~~l~Gr~I~V~~Ak~~ 419 (548)
..|+||.|.|.|+...
T Consensus 78 ~~f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 78 RWFAGKMITAAYVPLP 93 (114)
T ss_dssp CEETTEECEEEEECHH
T ss_pred CEECCEEEEEEEEcHH
Confidence 9999999999999653
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.87 E-value=4.5e-09 Score=92.35 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=62.3
Q ss_pred cccEEEEcCCCC--C--------CcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecC
Q 008928 224 LLRTIFVGNLPL--K--------VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (548)
Q Consensus 224 ~~rtVfVgNLP~--~--------~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s 293 (548)
.+++|.|.||=. + -.+++|+++|++||.|.+|.|..+. .+|||||+|.+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---------------------~~G~~fV~f~~ 64 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---------------------AQGNVYVKCPS 64 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---------------------TTCCEEEECSS
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---------------------CcEEEEEEECC
Confidence 457899999833 2 1246889999999999999983211 46999999999
Q ss_pred HHHHHHHH-HhcceeecCceeEeecCC
Q 008928 294 EQSTEAAL-AFNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 294 ~e~A~~Al-~lng~~~~gr~I~V~~a~ 319 (548)
.++|.+|+ .|||..|.|+.|.|.++.
T Consensus 65 ~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 65 IAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 99999999 699999999999999975
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=5.8e-08 Score=86.08 Aligned_cols=76 Identities=21% Similarity=0.203 Sum_probs=67.3
Q ss_pred cCCCccEEEEeCCCCC-CCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECC-HHHHHHHHHHcC---Ccc
Q 008928 332 LYDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT-REAANLVIKRRN---LKL 406 (548)
Q Consensus 332 ~~~~~~tLfV~NLp~~-~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~-~e~A~~Al~~ln---~~l 406 (548)
.......|||+||++. ++.++|+++|+.| |.|.+|.|+++.. .|||.|.+ ..+|..|+..++ ..|
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~----G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i 83 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNH----GEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQL 83 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSS----CCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhc----CCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEE
Confidence 4567899999999999 9999999999999 8999999998854 69999999 899999998884 889
Q ss_pred CCeEEEEEeee
Q 008928 407 RDRELRLSHAQ 417 (548)
Q Consensus 407 ~Gr~I~V~~Ak 417 (548)
.|..+.+....
T Consensus 84 ~g~~~~~evL~ 94 (121)
T 1owx_A 84 RNKEVTWEVLE 94 (121)
T ss_dssp TSSSEEEEECC
T ss_pred eCcEEEEEECC
Confidence 99888887653
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=6.8e-08 Score=81.01 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=59.7
Q ss_pred cEEEEcCCCC----CCcH----HHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHH
Q 008928 226 RTIFVGNLPL----KVKK----KTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (548)
Q Consensus 226 rtVfVgNLP~----~~te----e~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A 297 (548)
-||+|.-+|. .+-. .+|.+.|.+||.|..|+|.. +.+||+|.+.++|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-------------------------d~~fVtF~d~~sA 62 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-------------------------DKMWVTFLEGSSA 62 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-------------------------SSEEEEESSHHHH
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-------------------------CCEEEEECChHHH
Confidence 5888888772 3333 67889999999999999932 3499999999999
Q ss_pred HHHHHhcceeecCceeEeecCCC
Q 008928 298 EAALAFNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 298 ~~Al~lng~~~~gr~I~V~~a~~ 320 (548)
.+||.|||..+.|+.|.|.++.+
T Consensus 63 laAi~mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 63 LNVLSLNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHGGGGTTCEETTEEEEEEECCC
T ss_pred HHHHhcCCeEeCCeEEEEEeCCC
Confidence 99999999999999999999864
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=1.8e-07 Score=78.39 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=61.8
Q ss_pred CCccEEEEeCCCC----CCCH----HHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCc
Q 008928 334 DIKKTVFVGNLPF----DVKD----EEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLK 405 (548)
Q Consensus 334 ~~~~tLfV~NLp~----~~te----edL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~ 405 (548)
++..||+|..++. .+-+ .+|.+.|.+| |.|..|+|+.|. +||+|.+.++|.+||.+.+..
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~ 72 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF----GEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKE 72 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT----CCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC----CCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeE
Confidence 4567888887762 3333 6788999999 999999999873 899999999999999944499
Q ss_pred cCCeEEEEEeeecC
Q 008928 406 LRDRELRLSHAQQN 419 (548)
Q Consensus 406 l~Gr~I~V~~Ak~~ 419 (548)
++||.|+|.++.+.
T Consensus 73 v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 73 LLNRTITIALKSPS 86 (91)
T ss_dssp ETTEEEEEEECCCS
T ss_pred eCCeEEEEEeCCCC
Confidence 99999999999875
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=1.5e-07 Score=83.37 Aligned_cols=73 Identities=11% Similarity=0.037 Sum_probs=61.5
Q ss_pred cccEEEEcCCCCC-CcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecC-HHHHHHHH
Q 008928 224 LLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS-EQSTEAAL 301 (548)
Q Consensus 224 ~~rtVfVgNLP~~-~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s-~e~A~~Al 301 (548)
..+.|||+||+.. ++.++|+++|+.||.|..|.|..+. ..|||.|.+ +.+|..|+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----------------------~tgfVrf~~~~~~A~~av 73 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----------------------KEGIILFKEKAKEALGKA 73 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----------------------SEEEEEESSCHHHHHHHH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----------------------CEEEEEECCChHHHHHHH
Confidence 4579999999999 9999999999999999999984322 369999999 78999888
Q ss_pred -Hh--cceeecCceeEeecCC
Q 008928 302 -AF--NMAVIGGNHIRLDRAC 319 (548)
Q Consensus 302 -~l--ng~~~~gr~I~V~~a~ 319 (548)
.+ ++..|.|..+.+....
T Consensus 74 ~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 74 KDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp HHTTTSCBCTTSSSEEEEECC
T ss_pred HHhhcCCcEEeCcEEEEEECC
Confidence 56 4788888887776653
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=5.8e-07 Score=75.80 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=58.8
Q ss_pred ccEEEEcCCCCC-----CcH----HHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHH
Q 008928 225 LRTIFVGNLPLK-----VKK----KTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (548)
Q Consensus 225 ~rtVfVgNLP~~-----~te----e~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e 295 (548)
.-||+|.-++.. +-. .+|.+.|..||.|..|+|.. .-+||+|.+.+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~-------------------------d~~fVtF~d~~ 69 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQ-------------------------GQMLVTFADSH 69 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEET-------------------------TEEEEECSCSH
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEec-------------------------CcEEEEEcChH
Confidence 369999988743 222 56889999999999999943 23999999999
Q ss_pred HHHHHHHhcceeecCceeEeecCC
Q 008928 296 STEAALAFNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 296 ~A~~Al~lng~~~~gr~I~V~~a~ 319 (548)
+|.+||.|||..+.|+.|.|.+-.
T Consensus 70 sAl~AI~ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 70 SALSVLDVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHGGGSEETTEEEEEECCC
T ss_pred HHHHHHhcCCeeeCCeEEEEeccC
Confidence 999999999999999999998753
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.35 E-value=7.1e-07 Score=86.29 Aligned_cols=67 Identities=13% Similarity=0.046 Sum_probs=59.8
Q ss_pred CCHHHHHHHHhccCCCCCCeEEEEEeecC----CCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeeec
Q 008928 348 VKDEEIYQLFCGLNDLESSVEAVRVIRHP----HMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQQ 418 (548)
Q Consensus 348 ~teedL~~~F~~~g~~~G~I~~VrI~~d~----~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak~ 418 (548)
..+++|.+.|+.| |.|..|.|+++. .++.++|++||+|.+.++|.+|+..|+ ..|.||.|.|.|+..
T Consensus 141 e~~~dl~~e~~~~----G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKF----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTT----SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHcc----CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4578999999999 999999999654 345899999999999999999999888 999999999999864
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.30 E-value=1.2e-06 Score=84.59 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=58.9
Q ss_pred CcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-HhcceeecCceeEe
Q 008928 237 VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRL 315 (548)
Q Consensus 237 ~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~~~gr~I~V 315 (548)
-.+++|.+.|+.||.|.+|.|+.+...+. .++.++|++||+|.+.++|.+|+ .|||..|.||.|.|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~-------------~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEE-------------EDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSS-------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcc-------------cCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 35689999999999999999966543221 13457899999999999999999 69999999999999
Q ss_pred ecCC
Q 008928 316 DRAC 319 (548)
Q Consensus 316 ~~a~ 319 (548)
.++.
T Consensus 208 ~~~~ 211 (222)
T 3dxb_A 208 EVYD 211 (222)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9975
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.24 E-value=1.7e-06 Score=72.93 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=60.9
Q ss_pred CCCccEEEEeCCCCC-----CCH----HHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC
Q 008928 333 YDIKKTVFVGNLPFD-----VKD----EEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN 403 (548)
Q Consensus 333 ~~~~~tLfV~NLp~~-----~te----edL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln 403 (548)
.++..||+|..++.. +.+ .+|.+.|..| |.|..|+|+.|. +||+|.+.++|.+||.+.+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG 79 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY----GTIVLVRINQGQ--------MLVTFADSHSALSVLDVDG 79 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH----SCCSEEEEETTE--------EEEECSCSHHHHHHHHGGG
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC----CCEEEEEEecCc--------EEEEEcChHHHHHHHhcCC
Confidence 456789999988743 222 5688999999 899999999883 9999999999999999444
Q ss_pred CccCCeEEEEEeee
Q 008928 404 LKLRDRELRLSHAQ 417 (548)
Q Consensus 404 ~~l~Gr~I~V~~Ak 417 (548)
..++||.|+|.+-.
T Consensus 80 ~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 80 MKVKGRAVKISGPS 93 (95)
T ss_dssp SEETTEEEEEECCC
T ss_pred eeeCCeEEEEeccC
Confidence 99999999998743
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.98 E-value=2.5e-05 Score=67.40 Aligned_cols=71 Identities=20% Similarity=0.139 Sum_probs=64.0
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhc-----CCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHH
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKF-----GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~f-----G~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~ 299 (548)
.++|-|-|||-.+++..|+.|+..| |.|..|.++.+- +=|+|+|.+...|-+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----------------------~GAivef~d~~~AgK 77 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----------------------NGAIIIFRDSKFAAK 77 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----------------------TEEEEECSCHHHHHH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----------------------CceEEEEccchhhHH
Confidence 4899999999999999999999999 999999985432 569999999999999
Q ss_pred HH-HhcceeecCceeEeecC
Q 008928 300 AL-AFNMAVIGGNHIRLDRA 318 (548)
Q Consensus 300 Al-~lng~~~~gr~I~V~~a 318 (548)
|. +|+|..|.|+.|+|.-.
T Consensus 78 asLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 78 MLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp HHHHHSSEEETTEEEEEECH
T ss_pred HHhhcCCeeecCeEEEecCH
Confidence 86 99999999999999764
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=0.00012 Score=62.57 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=73.1
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhh-c----CCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHH
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIK-F----GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~-f----G~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~ 298 (548)
...+|.|.|||..+.++.|.-+|+. - |+|.+|... . +-|+|+|.+...|+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~------------------------~-~~AvItF~d~~va~ 61 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL------------------------G-CGGVLTFREPADAE 61 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE------------------------T-TEEEEEESSHHHHH
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc------------------------C-CcEEEEEcChHHHH
Confidence 3478999999999999999999996 2 688888772 1 46999999999999
Q ss_pred HHHHhcceeecCceeEeecCCCcccccCCCCCCcCCCccEEEEeCCCCCCC
Q 008928 299 AALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVK 349 (548)
Q Consensus 299 ~Al~lng~~~~gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV~NLp~~~t 349 (548)
..|+...+.|.+..|.|....+. ...+|++.+|+..++
T Consensus 62 rVL~k~~H~L~~~~LsV~P~~~~-------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 62 RVLAQADHELHGAQLSLRPAPPR-------------APARLLLQGLPPGTS 99 (104)
T ss_dssp HHHTCSCCBSSSSBCEEEECCCC-------------CCCCCCCCSCCCCCC
T ss_pred HHhcCCcceecCeEEEEEcCCCC-------------CcceEeeecCCCCCC
Confidence 99988788899999999876432 357899999998775
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=0.0012 Score=56.40 Aligned_cols=75 Identities=21% Similarity=0.182 Sum_probs=63.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhc---cCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCCeEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCG---LNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRDREL 411 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~---~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~Gr~I 411 (548)
...+|.|.|||..+.++.|.-+|+. -|. |.|..|.... +-|+|+|.+...|+..|..-.+.|.|..|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGG--G~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGG--GPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCC--CCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCC--ceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 4689999999999999999999977 232 8999887643 47899999999999999987899999999
Q ss_pred EEEeeecC
Q 008928 412 RLSHAQQN 419 (548)
Q Consensus 412 ~V~~Ak~~ 419 (548)
.|....+.
T Consensus 77 sV~P~~~~ 84 (104)
T 2dhx_A 77 SLRPAPPR 84 (104)
T ss_dssp EEEECCCC
T ss_pred EEEcCCCC
Confidence 99765543
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.00079 Score=58.08 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=63.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccC-CCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEE
Q 008928 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLN-DLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDREL 411 (548)
Q Consensus 334 ~~~~tLfV~NLp~~~teedL~~~F~~~g-~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I 411 (548)
+..++|-|-|||..+++..|+.++.++. ...|.|..|.++.| -|-|+|+|.+...|-+|.-.++ ..|.|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 3468899999999999999999998871 22368999988888 3579999999999988865555 99999999
Q ss_pred EEEee
Q 008928 412 RLSHA 416 (548)
Q Consensus 412 ~V~~A 416 (548)
+|.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 99743
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.77 E-value=0.0029 Score=54.11 Aligned_cols=73 Identities=12% Similarity=0.060 Sum_probs=60.6
Q ss_pred ccEEEEcCCCCCC-c----HHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHH
Q 008928 225 LRTIFVGNLPLKV-K----KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (548)
Q Consensus 225 ~rtVfVgNLP~~~-t----ee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~ 299 (548)
..+|+|.||+..+ . .+.+..+|..|+++.+..+.. +-.-..|.|.++++|..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk-----------------------SFRRirv~F~~~~~A~~ 61 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK-----------------------SFKRVRINFSNPLSAAD 61 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET-----------------------TTTEEEEECSSTTHHHH
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC-----------------------cceEEEEEeCChHHHHH
Confidence 4789999998865 2 367899999999998866521 33457899999999999
Q ss_pred HH-HhcceeecCceeEeecCCC
Q 008928 300 AL-AFNMAVIGGNHIRLDRACP 320 (548)
Q Consensus 300 Al-~lng~~~~gr~I~V~~a~~ 320 (548)
|- .||+..|.|..|+|.++++
T Consensus 62 AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 62 ARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp HHHTSTTSEETTEECEEECCCC
T ss_pred HHHHhccceecCceeEEEecCC
Confidence 97 7999999999999999874
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.63 E-value=0.0077 Score=52.77 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=59.5
Q ss_pred cccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHh
Q 008928 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (548)
Q Consensus 224 ~~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (548)
..+-|.|-+.|... ...|..+|+.||.|...... . ...+-+|.|.+..+|++||..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----------~-------------~~NWihI~Y~s~~~A~rAL~k 78 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----------N-------------TGNWMHIRYQSKLQARKALSK 78 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----------S-------------SSSEEEEEESSHHHHHHHHTT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----------C-------------CCCeEEEEeCCHHHHHHHHHh
Confidence 35789999999886 57888999999999887751 0 235899999999999999999
Q ss_pred cceeecC-ceeEeecCCC
Q 008928 304 NMAVIGG-NHIRLDRACP 320 (548)
Q Consensus 304 ng~~~~g-r~I~V~~a~~ 320 (548)
||..|.| -.|-|.++..
T Consensus 79 NG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 79 DGRIFGESIMIGVKPCID 96 (119)
T ss_dssp TTCEETTTEECEEEECCC
T ss_pred CCeEecCCEEEEEEECCC
Confidence 9999985 5677777643
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.45 E-value=0.011 Score=49.35 Aligned_cols=71 Identities=23% Similarity=0.220 Sum_probs=53.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hhc
Q 008928 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (548)
+.|.|++||+.+|++++.+.+..+..+....+....... .+ ..-.-|||.|.+.+++.... .++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~--~~-------------~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSL--YP-------------HMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSS--TT-------------CCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCC--CC-------------CcceEEEEEeCCHHHHHHHHHHhC
Confidence 469999999999999999999999877666553322211 11 13357999999999988888 589
Q ss_pred ceeecCc
Q 008928 305 MAVIGGN 311 (548)
Q Consensus 305 g~~~~gr 311 (548)
|..|.+.
T Consensus 67 g~~F~D~ 73 (91)
T 1uw4_A 67 GYVFLDN 73 (91)
T ss_dssp TCEEECT
T ss_pred CcEEEcC
Confidence 9888553
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.41 E-value=0.0082 Score=50.67 Aligned_cols=52 Identities=19% Similarity=0.359 Sum_probs=42.5
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
.+.++| ++|..+...||.++|+.||.| .|..+. -..|||.|.+++.|..||.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~Wid------------------------DTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID------------------------DTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEE------------------------TTEEEEECSCHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEc------------------------CCeEEEEecCHHHHHHHHH
Confidence 456666 999999999999999999965 444422 1489999999999999985
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.79 E-value=0.053 Score=45.24 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=51.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCC--CCceEEEEEECCHHHHHHHHHHcC-Ccc
Q 008928 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR--VGKGIAYVLFKTREAANLVIKRRN-LKL 406 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg--~srG~AFV~F~~~e~A~~Al~~ln-~~l 406 (548)
.+|.|++||+.+|++++.+.++.+ ..+.....+....+. ..-.-|||.|.+.+++....+..+ ..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~----~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM----PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC----CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc----ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 478999999999999999999998 677776666544322 233469999999999988887776 444
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.69 E-value=0.02 Score=48.87 Aligned_cols=74 Identities=15% Similarity=0.083 Sum_probs=59.2
Q ss_pred ccEEEEeCCCCCC-C----HHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCe
Q 008928 336 KKTVFVGNLPFDV-K----DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDR 409 (548)
Q Consensus 336 ~~tLfV~NLp~~~-t----eedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr 409 (548)
.++|+|.||+..+ . .+.++.+|..| +.+........- .=..|.|.+.++|.+|-..|+ ..+.|.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~----~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~ 74 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTY----DKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGK 74 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTT----CSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhh----CcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCc
Confidence 4789999998765 2 25779999999 666666555442 146899999999999988887 999999
Q ss_pred EEEEEeeecC
Q 008928 410 ELRLSHAQQN 419 (548)
Q Consensus 410 ~I~V~~Ak~~ 419 (548)
.|+|-|+++.
T Consensus 75 ~~r~YFgq~~ 84 (104)
T 1wey_A 75 EMKLYFAQTL 84 (104)
T ss_dssp ECEEECCCCS
T ss_pred eeEEEecCCC
Confidence 9999999843
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.67 E-value=0.011 Score=50.12 Aligned_cols=51 Identities=20% Similarity=0.389 Sum_probs=41.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
+.++| ++|..+...||.++|+.||.| .|..+. -..|||.|.+++.|..||.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wid------------------------DTsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID------------------------DTSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEE------------------------TTEEEEEEEEECHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEc------------------------CCeEEEEecCHHHHHHHHH
Confidence 44555 999999999999999999944 444421 1479999999999999995
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.12 E-value=0.06 Score=45.41 Aligned_cols=55 Identities=20% Similarity=0.433 Sum_probs=44.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHc
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRR 402 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~l 402 (548)
....++| ++|..+.-.||.++|+.| |.| .|..+-|- -|||.|.+++.|..||.++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~f----ggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAF----GNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTT----CSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhcc----CCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3456666 999999999999999999 532 45555552 7999999999999999866
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.75 E-value=0.049 Score=48.42 Aligned_cols=87 Identities=20% Similarity=0.122 Sum_probs=56.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeeccc--CCCCCccchhhhhhhccC-CCcceEEEEecCHHHHHHHHH
Q 008928 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPII--DTKIPRKGAILQKQINEN-ADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 226 rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~--~~~~prkga~~~~~~~~g-~skG~AFV~F~s~e~A~~Al~ 302 (548)
..|.|=+.|...+ ..|..+|++||.|..-.-+..+.. ....+. .+.... ....+..|.|.+..+|.+||.
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~------~k~yP~f~g~NWikItYds~~~A~rAL~ 80 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQD------RQFVPIFSGNSWTKITYDNPASAVDALL 80 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------------CCCCCEETTEEEEEBSSHHHHHHHHT
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeecccccccccccccccc------ccccCccCCCcEEEEEcCCHHHHHHHHH
Confidence 4678888877665 567789999999855211000000 000000 000000 134688999999999999999
Q ss_pred hcceeecCceeEeecCC
Q 008928 303 FNMAVIGGNHIRLDRAC 319 (548)
Q Consensus 303 lng~~~~gr~I~V~~a~ 319 (548)
.||..|.|..|-|.++.
T Consensus 81 ~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 81 ENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp TTTCEETTEECEEEECC
T ss_pred hCCeEeCcEEEEEEECC
Confidence 99999999988887764
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.37 E-value=0.07 Score=44.99 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=48.5
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHH-Hh
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (548)
+-.|.|+.||+.+|++++.+.++.+-.+....+ .....+. ....-.-|||.|.+.+++.... .+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~f-----v~G~~s~----------~~~~~SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-----FAADLSL----------YPHLYSRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCC-----CCCCSSS----------CCSCCCCCEEEESCHHHHHHHHHHS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEE-----eCCccCC----------CCCcceEEEEEeCCHHHHHHHHHHc
Confidence 346999999999999998888776554422222 1111111 0112346999999999999888 58
Q ss_pred cceeecCc
Q 008928 304 NMAVIGGN 311 (548)
Q Consensus 304 ng~~~~gr 311 (548)
+|..|.+.
T Consensus 74 ~g~~F~D~ 81 (97)
T 2l08_A 74 DGYIFLDS 81 (97)
T ss_dssp TTEEEECT
T ss_pred CCcEEEeC
Confidence 99888553
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.98 E-value=0.073 Score=45.02 Aligned_cols=53 Identities=21% Similarity=0.406 Sum_probs=44.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHc
Q 008928 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRR 402 (548)
Q Consensus 337 ~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~l 402 (548)
..++| ++|..+.-.||.++|+.| | -..|..+-|- -|||.|.+++.|..||.++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~f----g-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAF----G-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTS----E-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhcc----C-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 45566 999999999999999999 6 3456666662 7999999999999999876
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.89 E-value=0.03 Score=60.01 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=41.7
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHHh
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (548)
.|+|||. .|..+++.+|.++|++||+|.++.+ +.+ ..-||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~----~~~------------------~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFF----YES------------------FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEE----ECS------------------SSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEE----Ecc------------------CCeEEEEEeCCHHHHHHHHhc
Confidence 4899997 7999999999999999999999988 221 225999999999999988743
No 397
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.85 E-value=0.2 Score=43.86 Aligned_cols=73 Identities=8% Similarity=0.031 Sum_probs=58.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcCCccCC-eEEEE
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRNLKLRD-RELRL 413 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln~~l~G-r~I~V 413 (548)
....|.|-+.|... -..|...|..| |.|+...... ...+-+|.|.+..+|++||..++..|.| -.|-|
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~----G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQY----GNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGV 91 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTT----SCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhh----CcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEE
Confidence 46788898998874 66788889999 8999887621 2458999999999999999998888875 67777
Q ss_pred Eeeec
Q 008928 414 SHAQQ 418 (548)
Q Consensus 414 ~~Ak~ 418 (548)
.++..
T Consensus 92 ~p~~d 96 (119)
T 1wwh_A 92 KPCID 96 (119)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 77653
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.96 E-value=0.19 Score=42.41 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=45.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCC--CceEEEEEECCHHHHHHHHHHcC
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV--GKGIAYVLFKTREAANLVIKRRN 403 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~--srG~AFV~F~~~e~A~~Al~~ln 403 (548)
.+-+|.|+.||+.+|++++.+.++.+. .+.....+....+.. .-.-|||.|.+.++.....+..+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~----~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLP----AHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCS----SEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcC----ccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 456899999999999999998888762 333333322222211 12358999999999999888776
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=87.42 E-value=0.45 Score=42.22 Aligned_cols=80 Identities=11% Similarity=0.186 Sum_probs=55.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEE-EEEeecC--------CCC-----CCceEEEEEECCHHHHHHHHH
Q 008928 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA-VRVIRHP--------HMR-----VGKGIAYVLFKTREAANLVIK 400 (548)
Q Consensus 335 ~~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~-VrI~~d~--------~tg-----~srG~AFV~F~~~e~A~~Al~ 400 (548)
....|.|-+.|... ...|.+.|+.| |.|.. +.+.... ... ...++-.|+|.+..+|.+||.
T Consensus 6 ~e~~VtVFGFp~~~-~~~VI~~Fs~~----G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~ 80 (132)
T 3p3d_A 6 GELAILVFGYPETM-ANQVIAYFQEF----GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL 80 (132)
T ss_dssp --CEEEEECCCGGG-HHHHHHHHGGG----SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT
T ss_pred CceEEEEEecCHHH-HHHHHHHHHhh----ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH
Confidence 34567777887754 45677789999 77765 2111100 000 134588999999999999999
Q ss_pred HcCCccCCeEEEEEeeecC
Q 008928 401 RRNLKLRDRELRLSHAQQN 419 (548)
Q Consensus 401 ~ln~~l~Gr~I~V~~Ak~~ 419 (548)
..+..|.|.-|-|.++.+.
T Consensus 81 ~NG~ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 81 ENGAVFNGVLLGVIPYTKD 99 (132)
T ss_dssp TTTCEETTEECEEEECCHH
T ss_pred hCCeEeCcEEEEEEECCHH
Confidence 9999999998888888653
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=87.14 E-value=0.33 Score=51.95 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=42.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHc
Q 008928 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRR 402 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~l 402 (548)
.+.|||. .|..+++.+|.++|++| |.|.++.+..+. | -||.|+|.+.+++..++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~----g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQF----GPINNHFFYESF--G---LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGG----SCCCCEEEECSS--S---EEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhc----CCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhcc
Confidence 5789998 78899999999999999 899998776552 2 59999999999998776543
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.73 E-value=3.4 Score=44.61 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=42.0
Q ss_pred ccEEEEcCCCCCCcHHHHHHHhhhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCHHHHHHHHH
Q 008928 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (548)
Q Consensus 225 ~rtVfVgNLP~~~tee~L~~~Fs~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (548)
...++|+ +|..+...+|.++|+.||.| .|+.+ +...|||.|.+.+.|..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi------------------------ddt~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI------------------------DDTSAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC------------------------SSSEEEEECSCHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE------------------------cCCeEEEEECCHHHHHHHHH
Confidence 4577776 99999999999999999965 45442 22479999999999999984
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=65.30 E-value=18 Score=38.96 Aligned_cols=55 Identities=20% Similarity=0.435 Sum_probs=43.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCCCCCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC
Q 008928 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN 403 (548)
Q Consensus 336 ~~tLfV~NLp~~~teedL~~~F~~~g~~~G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln 403 (548)
...++|+ +|..+...+|.++|+.| |.| .|+.+.+ ..|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~f----g~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAF----GNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGG----CCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhc----CCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4567776 88899999999999999 643 4554444 379999999999999998774
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=25.68 E-value=85 Score=28.85 Aligned_cols=60 Identities=23% Similarity=0.195 Sum_probs=40.3
Q ss_pred cEEEEcCCCC-C--------CcHHHHHHHh--hhcCCeeEEEEeeecccCCCCCccchhhhhhhccCCCcceEEEEecCH
Q 008928 226 RTIFVGNLPL-K--------VKKKTLIKEF--IKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSE 294 (548)
Q Consensus 226 rtVfVgNLP~-~--------~tee~L~~~F--s~fG~I~sVri~~~~~~~~~~prkga~~~~~~~~g~skG~AFV~F~s~ 294 (548)
-++.|-|+|. . ..-..|.+.| ..|.++. |+....+ ..+.|+|.|.|...
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-------------------~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-------------------LGHSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-------------------SBEEEEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-------------------CCCceeEEEEecCC
Confidence 3678889987 2 3457899977 8999875 4433322 12779999999986
Q ss_pred HHH-HHHHHhcc
Q 008928 295 QST-EAALAFNM 305 (548)
Q Consensus 295 e~A-~~Al~lng 305 (548)
-.- ..|+.|+.
T Consensus 73 w~Gf~~A~~fek 84 (172)
T 4e8u_A 73 WNGLHNGLLFDK 84 (172)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 553 34665543
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=25.63 E-value=1.2e+02 Score=23.08 Aligned_cols=62 Identities=10% Similarity=0.300 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHhccCCCC-CCeEEEEEeecCCCCCCceEEEEEECCHHHHHHHHHHcC-CccCCeEEEEEeee
Q 008928 347 DVKDEEIYQLFCGLNDLE-SSVEAVRVIRHPHMRVGKGIAYVLFKTREAANLVIKRRN-LKLRDRELRLSHAQ 417 (548)
Q Consensus 347 ~~teedL~~~F~~~g~~~-G~I~~VrI~~d~~tg~srG~AFV~F~~~e~A~~Al~~ln-~~l~Gr~I~V~~Ak 417 (548)
.+...+|..+++.-+.+. ..|-.|.|..+ |.||+-... .|..++..++ ..+.|+.+.|..+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 467778888887653111 24556666433 888887654 3566777776 88999999888664
Done!