BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008931
(548 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Ser
pdb|1ZDG|A Chain A, Ser159 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 128/245 (52%), Gaps = 30/245 (12%)
Query: 25 GSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWI 84
GS TDQA+VTL D + G VLG S++ +++ + VL + VSD +K L+
Sbjct: 18 GSHMTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDE 77
Query: 85 VEKISLLENPNQV------RPKRFWGV-YTKLKIFNMTNYKKVVYLDADTIVIKNIEDLF 137
V + +L++ + RP+ GV TKL +++T Y K V++DADT+V+ NI+DLF
Sbjct: 78 VITVDILDSGDSAHLTLMKRPE--LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 138 KCRKFCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFP 195
+ + A + + NSGV V +PS +N ++ + GS++GGDQG LN++++ +
Sbjct: 136 EREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWA 195
Query: 196 NAHVFEPNLPLEVVNTRPVPNMERLSTLYN-ADVGLYMLANKWMVDESELHVIHYTLGPL 254
+ +LP +YN + + +Y + + V+H+ LG
Sbjct: 196 TTDI-RKHLPF----------------IYNLSSISIYSYLPAFKAFGANAKVVHF-LGQT 237
Query: 255 KPWDW 259
KPW++
Sbjct: 238 KPWNY 242
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7M|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7N|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7N|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7O|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3T7O|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3U2U|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2U|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2X|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2X|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2V|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
pdb|3U2V|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
Length = 263
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 126/241 (52%), Gaps = 30/241 (12%)
Query: 29 TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKI 88
TDQA+VTL D + G VLG S++ + + +VVL + VSD +K+L+ V +
Sbjct: 3 TDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMV 62
Query: 89 SLLENPNQV------RPKRFWGV-YTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRK 141
+L++ + RP+ GV TKL +++T Y K V++DADT+V+ NI+DLF +
Sbjct: 63 DVLDSGDSAHLTLMKRPEL--GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREE 120
Query: 142 FCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHV 199
A + + NSGV V +PS +N ++ + GS+ GGDQG LN+++S + +
Sbjct: 121 LSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDI 180
Query: 200 FEPNLPLEVVNTRPVPNMERLSTLYN-ADVGLYMLANKWMVDESELHVIHYTLGPLKPWD 258
+ L +YN + + +Y + V + V+H+ LG +KPW+
Sbjct: 181 -----------------RKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHF-LGRVKPWN 222
Query: 259 W 259
+
Sbjct: 223 Y 223
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese
Length = 284
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 126/241 (52%), Gaps = 30/241 (12%)
Query: 29 TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKI 88
TDQA+VTL D + G VLG S++ + + +VVL + VSD +K+L+ V +
Sbjct: 24 TDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMV 83
Query: 89 SLLENPNQV------RPKRFWGV-YTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRK 141
+L++ + RP+ GV TKL +++T Y K V++DADT+V+ NI+DLF +
Sbjct: 84 DVLDSGDSAHLTLMKRPEL--GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREE 141
Query: 142 FCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHV 199
A + + NSGV V +PS +N ++ + GS+ GGDQG LN+++S + +
Sbjct: 142 LSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDI 201
Query: 200 FEPNLPLEVVNTRPVPNMERLSTLYN-ADVGLYMLANKWMVDESELHVIHYTLGPLKPWD 258
+ L +YN + + +Y + V + V+H+ LG +KPW+
Sbjct: 202 -----------------RKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHF-LGRVKPWN 243
Query: 259 W 259
+
Sbjct: 244 Y 244
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp-Glucose
pdb|3RMV|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp
Length = 263
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 126/241 (52%), Gaps = 30/241 (12%)
Query: 29 TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKI 88
TDQA+VTL D + G VLG S++ + + +VVL + VSD +K+L+ V +
Sbjct: 3 TDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMV 62
Query: 89 SLLENPNQV------RPKRFWGVY-TKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRK 141
+L++ + RP+ GV TKL +++T Y K V++DADT+V+ NI+DLF +
Sbjct: 63 DVLDSGDSAHLTLMKRPEL--GVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREE 120
Query: 142 FCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHV 199
A + + NSGV V +PS +N ++ + GS+ GGDQG LN+++S + +
Sbjct: 121 LSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDI 180
Query: 200 FEPNLPLEVVNTRPVPNMERLSTLYN-ADVGLYMLANKWMVDESELHVIHYTLGPLKPWD 258
+ L +YN + + +Y + V + V+H+ LG +KPW+
Sbjct: 181 -----------------RKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHF-LGRVKPWN 222
Query: 259 W 259
+
Sbjct: 223 Y 223
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Asn
Length = 353
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 127/245 (51%), Gaps = 30/245 (12%)
Query: 25 GSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWI 84
GS TDQA+VTL D + G VLG S++ +++ + VL + VSD +K L+
Sbjct: 18 GSHMTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDE 77
Query: 85 VEKISLLENPNQV------RPKRFWGV-YTKLKIFNMTNYKKVVYLDADTIVIKNIEDLF 137
V + +L++ + RP+ GV TKL +++T Y K V++DADT+V+ NI+DLF
Sbjct: 78 VITVDILDSGDSAHLTLMKRPE--LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 138 KCRKFCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFP 195
+ + A + + NSGV V +PS +N ++ + GS+ GGDQG LN++++ +
Sbjct: 136 EREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFNGGDQGLLNTFFNSWA 195
Query: 196 NAHVFEPNLPLEVVNTRPVPNMERLSTLYN-ADVGLYMLANKWMVDESELHVIHYTLGPL 254
+ +LP +YN + + +Y + + V+H+ LG
Sbjct: 196 TTDI-RKHLPF----------------IYNLSSISIYSYLPAFKAFGANAKVVHF-LGQT 237
Query: 255 KPWDW 259
KPW++
Sbjct: 238 KPWNY 242
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
pdb|3V8Z|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
Complexed With Udp
Length = 291
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 127/245 (51%), Gaps = 30/245 (12%)
Query: 25 GSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWI 84
GS TDQA+VTL D + G VLG S++ +++ + VL + VSD +K L+
Sbjct: 18 GSHMTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDE 77
Query: 85 VEKISLLENPNQV------RPKRFWGV-YTKLKIFNMTNYKKVVYLDADTIVIKNIEDLF 137
V + +L++ + RP+ GV TKL +++T Y K V++DADT+V+ NI+DLF
Sbjct: 78 VITVDILDSGDSAHLTLMKRPEL--GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 138 KCRKFCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFP 195
+ + A + + NSGV V +PS +N ++ + GS+ GGDQG LN++++ +
Sbjct: 136 EREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWA 195
Query: 196 NAHVFEPNLPLEVVNTRPVPNMERLSTLYN-ADVGLYMLANKWMVDESELHVIHYTLGPL 254
+ +LP +YN + + +Y + + V+H+ LG
Sbjct: 196 TTDI-RKHLPF----------------IYNLSSISIYSYLPAFKAFGANAKVVHF-LGQT 237
Query: 255 KPWDW 259
KPW++
Sbjct: 238 KPWNY 242
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270
pdb|3V91|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270 Complexed With Udp-Glucose
Length = 291
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 127/245 (51%), Gaps = 30/245 (12%)
Query: 25 GSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWI 84
GS TDQA+VTL D + G VLG S++ +++ + VL + VSD +K L+
Sbjct: 18 GSHMTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDE 77
Query: 85 VEKISLLENPNQV------RPKRFWGVY-TKLKIFNMTNYKKVVYLDADTIVIKNIEDLF 137
V + +L++ + RP+ GV TKL +++T Y K V++DADT+V+ NI+DLF
Sbjct: 78 VITVDILDSGDSAHLTLMKRPEL--GVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 138 KCRKFCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFP 195
+ + A + + NSGV V +PS +N ++ + GS+ GGDQG LN++++ +
Sbjct: 136 EREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWA 195
Query: 196 NAHVFEPNLPLEVVNTRPVPNMERLSTLYN-ADVGLYMLANKWMVDESELHVIHYTLGPL 254
+ +LP +YN + + +Y + + V+H+ LG
Sbjct: 196 TTDI-RKHLPF----------------IYNLSSISIYSYLPAFKAFGANAKVVHF-LGQT 237
Query: 255 KPWDW 259
KPW++
Sbjct: 238 KPWNY 242
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
pdb|1ZCT|B Chain B, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
Length = 290
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 127/245 (51%), Gaps = 30/245 (12%)
Query: 25 GSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWI 84
GS TDQA+VTL D + G VLG S++ +++ + VL + VSD +K L+
Sbjct: 18 GSHMTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDE 77
Query: 85 VEKISLLENPNQV------RPKRFWGV-YTKLKIFNMTNYKKVVYLDADTIVIKNIEDLF 137
V + +L++ + RP+ GV TKL +++T Y K V++DADT+V+ NI+DLF
Sbjct: 78 VITVDILDSGDSAHLTLMKRPEL--GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 138 KCRKFCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFP 195
+ + A + + NSGV V +PS +N ++ + GS+ GGDQG LN++++ +
Sbjct: 136 EREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWA 195
Query: 196 NAHVFEPNLPLEVVNTRPVPNMERLSTLYN-ADVGLYMLANKWMVDESELHVIHYTLGPL 254
+ +LP +YN + + +Y + + V+H+ LG
Sbjct: 196 TTDI-RKHLPF----------------IYNLSSISIYSYLPAFKAFGANAKVVHF-LGQT 237
Query: 255 KPWDW 259
KPW++
Sbjct: 238 KPWNY 242
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT
RESIDUE 270
Length = 291
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 128/245 (52%), Gaps = 30/245 (12%)
Query: 25 GSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWI 84
GS TDQA+VTL D + G VLG S++ +++ + VL + VSD +K L+
Sbjct: 18 GSHMTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDE 77
Query: 85 VEKISLLENPNQV------RPKRFWGV-YTKLKIFNMTNYKKVVYLDADTIVIKNIEDLF 137
V + +L++ + RP+ GV TKL +++T Y K V++DADT+V+ NI+DLF
Sbjct: 78 VITVDILDSGDSAHLTLMKRPEL--GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 138 KCRKFCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFP 195
+ + A + + NSGV V +PS +N ++ + GS++GGDQG LN++++ +
Sbjct: 136 EREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWA 195
Query: 196 NAHVFEPNLPLEVVNTRPVPNMERLSTLYN-ADVGLYMLANKWMVDESELHVIHYTLGPL 254
+ +LP +YN + + ++ + + V+H+ LG
Sbjct: 196 TTDI-RKHLPF----------------IYNLSSISIFSYLPAFKAFGANAKVVHF-LGQT 237
Query: 255 KPWDW 259
KPW++
Sbjct: 238 KPWNY 242
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 127/245 (51%), Gaps = 30/245 (12%)
Query: 25 GSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWI 84
GS TDQA+VTL D + G VLG S++ +++ + VL + VSD +K L+
Sbjct: 4 GSHMTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDE 63
Query: 85 VEKISLLENPNQV------RPKRFWGV-YTKLKIFNMTNYKKVVYLDADTIVIKNIEDLF 137
V + +L++ + RP+ GV TKL +++T Y K V++DADT+V+ NI+DLF
Sbjct: 64 VITVDILDSGDSAHLTLMKRPE--LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 121
Query: 138 KCRKFCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFP 195
+ + A + + NSGV V +PS +N ++ + GS+ GGDQG LN++++ +
Sbjct: 122 EREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWA 181
Query: 196 NAHVFEPNLPLEVVNTRPVPNMERLSTLYN-ADVGLYMLANKWMVDESELHVIHYTLGPL 254
+ +LP +YN + + +Y + + V+H+ LG
Sbjct: 182 TTDI-RKHLPF----------------IYNLSSISIYSYLPAFKAFGANAKVVHF-LGQT 223
Query: 255 KPWDW 259
KPW++
Sbjct: 224 KPWNY 228
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form
pdb|3QVB|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp
pdb|3U2W|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
pdb|3U2W|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
Length = 263
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 126/241 (52%), Gaps = 30/241 (12%)
Query: 29 TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKI 88
TDQA+VTL D + G VLG S++ + + +VVL + VSD +K+L+ V +
Sbjct: 3 TDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMV 62
Query: 89 SLLENPNQV------RPKRFWGV-YTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRK 141
+L++ + RP+ GV TKL +++T Y K V++DADT+V+ NI+DLF +
Sbjct: 63 DVLDSGDSAHLTLMKRPEL--GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREE 120
Query: 142 FCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHV 199
A + + NSGV V +PS +N ++ + GS+ GGDQG LN+++S + +
Sbjct: 121 LSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDI 180
Query: 200 FEPNLPLEVVNTRPVPNMERLSTLYN-ADVGLYMLANKWMVDESELHVIHYTLGPLKPWD 258
+ L +YN + + ++ + V + V+H+ LG +KPW+
Sbjct: 181 -----------------RKHLPFIYNLSSISIFSYLPAFKVFGASAKVVHF-LGRVKPWN 222
Query: 259 W 259
+
Sbjct: 223 Y 223
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue
270
Length = 291
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 127/245 (51%), Gaps = 30/245 (12%)
Query: 25 GSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWI 84
GS TDQA+VTL D + G VLG S++ +++ + VL + VSD +K L+
Sbjct: 18 GSHMTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDE 77
Query: 85 VEKISLLENPNQV------RPKRFWGV-YTKLKIFNMTNYKKVVYLDADTIVIKNIEDLF 137
V + +L++ + RP+ GV TKL +++T Y K V++DADT+V+ NI+DLF
Sbjct: 78 VITVDILDSGDSAHLTLMKRPEL--GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 138 KCRKFCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFP 195
+ + A + + NSGV V +PS +N ++ + GS+ GGDQG LN++++ +
Sbjct: 136 EREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWA 195
Query: 196 NAHVFEPNLPLEVVNTRPVPNMERLSTLYN-ADVGLYMLANKWMVDESELHVIHYTLGPL 254
+ +LP +YN + + ++ + + V+H+ LG
Sbjct: 196 TTDI-RKHLPF----------------IYNLSSISIFSYLPAFKAFGANAKVVHF-LGQT 237
Query: 255 KPWDW 259
KPW++
Sbjct: 238 KPWNY 242
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 30/245 (12%)
Query: 25 GSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWI 84
GS TDQA+VTL D + G VLG S++ +++ + VL + VSD +K L+
Sbjct: 18 GSHMTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDE 77
Query: 85 VEKISLLENPNQV------RPKRFWGV-YTKLKIFNMTNYKKVVYLDADTIVIKNIEDLF 137
V + +L++ + RP+ GV TKL +++T Y K V++DADT+V+ NI+DLF
Sbjct: 78 VITVDILDSGDSAHLTLMKRPE--LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 138 KCRKFCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFP 195
+ + A + + NSGV V +PS +N ++ + GS+ GG QG LN++++ +
Sbjct: 136 EREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGSQGLLNTFFNSWA 195
Query: 196 NAHVFEPNLPLEVVNTRPVPNMERLSTLYN-ADVGLYMLANKWMVDESELHVIHYTLGPL 254
+ +LP +YN + + +Y + + V+H+ LG
Sbjct: 196 TTDI-RKHLPF----------------IYNLSSISIYSYLPAFKAFGANAKVVHF-LGQT 237
Query: 255 KPWDW 259
KPW++
Sbjct: 238 KPWNY 242
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 125/241 (51%), Gaps = 30/241 (12%)
Query: 29 TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKI 88
TDQA+VTL D + G VLG S++ +++ + VL + VSD +K L+ V +
Sbjct: 2 TDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITV 61
Query: 89 SLLENPNQV------RPKRFWGV-YTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRK 141
+L++ + RP+ GV TKL +++T Y K V++DADT+V+ NI+DLF+ +
Sbjct: 62 DILDSGDSAHLTLMKRPE--LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE 119
Query: 142 FCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHV 199
A + + NSGV V +PS +N ++ + GS+ GGDQG LN++++ + +
Sbjct: 120 LSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDI 179
Query: 200 FEPNLPLEVVNTRPVPNMERLSTLYN-ADVGLYMLANKWMVDESELHVIHYTLGPLKPWD 258
+LP +YN + + +Y + + V+H+ LG KPW+
Sbjct: 180 -RKHLPF----------------IYNLSSISIYSYLPAFKAFGANAKVVHF-LGQTKPWN 221
Query: 259 W 259
+
Sbjct: 222 Y 222
>pdb|1FRT|B Chain B, Crystal Structure Of The Complex Of Rat Neonatal Fc
Receptor With Fc
pdb|3FRU|B Chain B, Neonatal Fc Receptor, Ph 6.5
pdb|3FRU|D Chain D, Neonatal Fc Receptor, Ph 6.5
pdb|3FRU|F Chain F, Neonatal Fc Receptor, Ph 6.5
pdb|1ED3|B Chain B, Crystal Structure Of Rat Minor Histocompatibility Antigen
Complex Rt1-AaMTF-E.
pdb|1ED3|E Chain E, Crystal Structure Of Rat Minor Histocompatibility Antigen
Complex Rt1-AaMTF-E.
pdb|1I1A|B Chain B, Crystal Structure Of The Neonatal Fc Receptor Complexed
With A Heterodimeric Fc
Length = 99
Score = 32.3 bits (72), Expect = 0.71, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 182 GDQGFLNSYYSDFPNAHVFEPNLPLEVV-NTRPVPNMERLSTLYNADVGLYMLAN-KWMV 239
G FLN Y S F P + +E++ N + +PN+E ++ D Y+LA+ ++
Sbjct: 18 GKPNFLNCYVSQF-----HPPQIEIELLKNGKKIPNIEMSDLSFSKDWSFYILAHTEFTP 72
Query: 240 DESELH---VIHYTLGPLKPWDW 259
E++++ V H TL K W
Sbjct: 73 TETDVYACRVKHVTLKEPKTVTW 95
>pdb|1KJM|B Chain B, Tap-A-Associated Rat Mhc Class I Molecule
pdb|1KJV|B Chain B, Tap-B-Associated Rat Mhc Class I Molecule
Length = 100
Score = 32.3 bits (72), Expect = 0.71, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 182 GDQGFLNSYYSDFPNAHVFEPNLPLEVV-NTRPVPNMERLSTLYNADVGLYMLAN-KWMV 239
G FLN Y S F P + +E++ N + +PN+E ++ D Y+LA+ ++
Sbjct: 19 GKPNFLNCYVSQF-----HPPQIEIELLKNGKKIPNIEMSDLSFSKDWSFYILAHTEFTP 73
Query: 240 DESELH---VIHYTLGPLKPWDW 259
E++++ V H TL K W
Sbjct: 74 TETDVYACRVKHVTLKEPKTVTW 96
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 43 LLGVRVLGKSIR--DTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPN 95
LG V G++I D GS K V DG+S K + ++G KI + NPN
Sbjct: 223 FLGHIVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPN 277
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 445 SFSSDVESSDYDSGKGHQRQASACDFVTWYYGMGM 479
F+S E +Y ++RQAS +F+TWY+ +
Sbjct: 3 QFASKAEEKNY-----YERQASLAEFLTWYHQQEL 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,320,265
Number of Sequences: 62578
Number of extensions: 625894
Number of successful extensions: 1262
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1218
Number of HSP's gapped (non-prelim): 20
length of query: 548
length of database: 14,973,337
effective HSP length: 104
effective length of query: 444
effective length of database: 8,465,225
effective search space: 3758559900
effective search space used: 3758559900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)