Query 008932
Match_columns 548
No_of_seqs 304 out of 2441
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 18:21:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4.6E-55 9.9E-60 451.5 51.8 428 102-533 13-448 (455)
2 PRK10189 MATE family multidrug 100.0 2.3E-51 4.9E-56 428.0 55.2 438 105-544 28-478 (478)
3 PRK00187 multidrug efflux prot 100.0 1.7E-49 3.7E-54 413.8 52.0 428 103-535 7-451 (464)
4 PRK10367 DNA-damage-inducible 100.0 1.8E-48 4E-53 402.5 50.6 418 102-528 5-431 (441)
5 PRK09575 vmrA multidrug efflux 100.0 7.8E-48 1.7E-52 400.8 51.4 419 105-527 11-435 (453)
6 PRK01766 multidrug efflux prot 100.0 2.1E-47 4.5E-52 399.4 52.0 429 100-532 6-446 (456)
7 TIGR01695 mviN integral membra 100.0 5.7E-36 1.2E-40 317.6 51.3 418 108-531 2-431 (502)
8 KOG1347 Uncharacterized membra 100.0 2E-38 4.4E-43 324.7 26.5 430 102-536 24-460 (473)
9 TIGR00797 matE putative efflux 100.0 1.6E-34 3.6E-39 291.1 41.5 336 114-453 1-341 (342)
10 TIGR02900 spore_V_B stage V sp 100.0 4.9E-33 1.1E-37 294.2 45.9 410 109-530 2-436 (488)
11 PF03023 MVIN: MviN-like prote 100.0 1.2E-30 2.7E-35 270.0 47.8 396 136-536 5-411 (451)
12 COG0728 MviN Uncharacterized m 100.0 7.3E-30 1.6E-34 259.3 50.3 426 106-533 7-442 (518)
13 PRK15099 O-antigen translocase 100.0 7.6E-31 1.7E-35 271.1 42.3 402 108-526 3-410 (416)
14 PRK10459 colanic acid exporter 100.0 4.4E-24 9.4E-29 225.8 44.1 397 106-528 5-405 (492)
15 COG2244 RfbX Membrane protein 99.9 6.3E-21 1.4E-25 201.2 40.3 387 105-512 5-396 (480)
16 PRK00187 multidrug efflux prot 99.9 1E-20 2.2E-25 197.6 25.1 208 102-309 232-443 (464)
17 PRK10189 MATE family multidrug 99.9 7.7E-20 1.7E-24 191.2 26.7 205 321-527 24-236 (478)
18 COG0534 NorM Na+-driven multid 99.9 7.4E-20 1.6E-24 189.6 25.7 208 321-530 12-223 (455)
19 PRK01766 multidrug efflux prot 99.8 1.4E-19 3E-24 189.5 24.6 208 101-310 234-442 (456)
20 PRK10367 DNA-damage-inducible 99.8 5.9E-19 1.3E-23 182.7 25.8 205 321-527 4-211 (441)
21 PRK09575 vmrA multidrug efflux 99.8 6.8E-19 1.5E-23 183.6 26.0 208 321-530 7-217 (453)
22 TIGR01695 mviN integral membra 99.8 5.4E-17 1.2E-21 172.4 32.7 234 102-342 219-455 (502)
23 PF03023 MVIN: MviN-like prote 99.7 3.8E-15 8.2E-20 154.6 31.7 207 103-311 195-404 (451)
24 PF01554 MatE: MatE; InterPro 99.7 6E-18 1.3E-22 151.0 7.0 161 114-276 1-162 (162)
25 TIGR00797 matE putative efflux 99.7 1.6E-15 3.4E-20 152.9 24.7 192 334-527 1-196 (342)
26 TIGR02900 spore_V_B stage V sp 99.7 1.2E-14 2.6E-19 153.8 30.3 203 102-310 221-434 (488)
27 PF01943 Polysacc_synt: Polysa 99.7 1.4E-13 3E-18 133.7 31.9 267 109-391 2-271 (273)
28 COG0728 MviN Uncharacterized m 99.7 2.7E-13 5.8E-18 138.8 34.6 237 103-345 229-468 (518)
29 PF01554 MatE: MatE; InterPro 99.6 3.1E-16 6.8E-21 139.8 7.1 160 334-495 1-161 (162)
30 PRK15099 O-antigen translocase 99.6 2.9E-13 6.2E-18 140.1 24.4 198 102-308 211-410 (416)
31 PRK10459 colanic acid exporter 99.6 1.1E-12 2.4E-17 139.0 29.1 201 102-310 203-405 (492)
32 COG2244 RfbX Membrane protein 99.6 4.6E-12 1E-16 133.8 30.4 187 102-295 209-396 (480)
33 PF13440 Polysacc_synt_3: Poly 99.5 7.7E-11 1.7E-15 113.0 31.0 245 124-391 2-250 (251)
34 KOG2864 Nuclear division RFT1 99.1 8.2E-07 1.8E-11 87.2 32.6 415 108-532 10-453 (530)
35 PF04506 Rft-1: Rft protein; 99.1 8.1E-08 1.7E-12 100.8 26.5 205 326-531 253-473 (549)
36 KOG1347 Uncharacterized membra 99.0 1.9E-08 4.1E-13 104.1 19.3 203 322-527 24-229 (473)
37 PF07260 ANKH: Progressive ank 98.9 3.1E-06 6.8E-11 79.8 27.8 258 105-370 10-285 (345)
38 PF14667 Polysacc_synt_C: Poly 98.6 5.1E-06 1.1E-10 72.3 17.9 80 230-311 2-81 (146)
39 PF04506 Rft-1: Rft protein; 98.2 0.00014 3.1E-09 76.6 21.1 202 106-310 253-470 (549)
40 PF01943 Polysacc_synt: Polysa 98.1 0.0012 2.6E-08 63.6 22.6 189 329-530 2-193 (273)
41 PF14667 Polysacc_synt_C: Poly 98.0 3E-05 6.4E-10 67.4 9.4 83 450-532 2-84 (146)
42 KOG2864 Nuclear division RFT1 98.0 0.0029 6.2E-08 63.0 22.0 201 106-310 239-449 (530)
43 PF13440 Polysacc_synt_3: Poly 97.9 0.0046 1E-07 58.8 22.1 163 349-527 8-172 (251)
44 PF07260 ANKH: Progressive ank 97.6 0.021 4.5E-07 54.6 21.3 160 320-491 5-173 (345)
45 COG4267 Predicted membrane pro 96.7 0.76 1.6E-05 45.2 33.5 334 159-521 78-439 (467)
46 COG4267 Predicted membrane pro 67.6 1.4E+02 0.0031 30.0 19.0 136 376-527 75-210 (467)
47 PF04505 Dispanin: Interferon- 59.6 38 0.00083 25.8 6.1 34 391-426 45-78 (82)
48 PF04235 DUF418: Protein of un 51.8 1.6E+02 0.0035 25.6 13.6 28 399-426 9-36 (163)
49 PF05975 EcsB: Bacterial ABC t 28.9 6.3E+02 0.014 25.7 15.8 38 177-214 89-126 (386)
50 PF01102 Glycophorin_A: Glycop 24.9 1.1E+02 0.0024 25.3 3.8 26 285-310 66-91 (122)
51 PF04505 Dispanin: Interferon- 24.2 3.2E+02 0.007 20.7 6.5 36 161-196 36-71 (82)
52 KOG2234 Predicted UDP-galactos 23.9 7.4E+02 0.016 24.7 16.6 45 321-372 85-129 (345)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4.6e-55 Score=451.54 Aligned_cols=428 Identities=21% Similarity=0.238 Sum_probs=405.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHH
Q 008932 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEV 181 (548)
Q Consensus 102 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~lG~~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~ 181 (548)
.++.|+++++++|++++++++.+++++|++++||+|++++|+.+++.++...+..+..|++.|.+++++|++|+||++++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~ 92 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKA 92 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHHH
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHH
Q 008932 182 QHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLK 261 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 261 (548)
++..++++.++++++++.+++.+.+.++++.+++. ++|+.+.+..|+++..++.|+..+..++.+++|+.|+++.+++
T Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 93 KRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGA--PAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999999976 4579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHhhh-cC-cchhhHHHHHHHHHHHHHHHHHHHHhhccc--cc--ccccCCChhHHHHHHHhhHHH
Q 008932 262 ALAVASAINGIGDVALCSF-LG-YGIAGAAWATMVSQVVSAYMMIQSLNNKGY--NA--FSFSVPSTNELATILGLAGPV 335 (548)
Q Consensus 262 ~~~~~~~~~i~l~~~li~~-~~-~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~l~~~~p~ 335 (548)
.+++++++|+++|++|++. ++ +|+.|+++||++++++..++..+++.++++ .. .+..+++++.+++++|+|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999988 57 999999999999999999999988877652 11 334588999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHHHH
Q 008932 336 FITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGS 415 (548)
Q Consensus 336 ~~~~~~~~~~~~i~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~ 415 (548)
+++...+...+.+.+.+++++|++.+|+|+++.++.++.++++.|++++.+++++ +++|+ ||++++|+..+.+++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG-~~~Ga-~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVG-QNLGA-GNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC-CCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999995 59999 999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHH-HHHHHHHHH
Q 008932 416 TLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSG-CFLLGALVL 494 (548)
Q Consensus 416 ~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~v~~~~~ 494 (548)
.++...+++++++++++.++|++|+++.+...+++.+..+..++++.+.+..+++||.||+|.++..++. .+++.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988766 567788988
Q ss_pred HHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHcCCCccc
Q 008932 495 LFASRG-YGLPGCWFALVCFQSARFLLSLWRLLSPDGTLY 533 (548)
Q Consensus 495 ~~~~~~-~G~~G~~~a~~~~~~~~~~~~~~~l~~~~~~~~ 533 (548)
+.+... +|..|+|+++..++.++.+...+++++++|...
T Consensus 409 ~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (455)
T COG0534 409 YLLGFFFLGLAGVWIGFPLSLILRAILLLLRLRRGRWRRK 448 (455)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 877777 999999999999999999999999999888764
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=2.3e-51 Score=428.04 Aligned_cols=438 Identities=18% Similarity=0.225 Sum_probs=397.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Q 008932 105 MKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQ 184 (548)
Q Consensus 105 ~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~lG~~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~~ 184 (548)
.|+++++++|.++++++..+++++|+.++|++|++++|+++++.++..+...+..|++.+.+++++|++|++|+|++++.
T Consensus 28 ~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~~ 107 (478)
T PRK10189 28 WREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARAA 107 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999988989999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 008932 185 ISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALA 264 (548)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 264 (548)
.++++.++++++++.+++.+.++++++.++.+..|+|+.+.+..|+++..++.|+..+..++++++|+.|+++.+++.++
T Consensus 108 ~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~ 187 (478)
T PRK10189 108 ARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLING 187 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHH
Confidence 99999999999999999999999999999853247899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHhhh----cCcchhhHHHHHHHHHHHHHHHHHHHHhhc-c-ccccc----ccCCChhHHHHHHHhhHH
Q 008932 265 VASAINGIGDVALCSF----LGYGIAGAAWATMVSQVVSAYMMIQSLNNK-G-YNAFS----FSVPSTNELATILGLAGP 334 (548)
Q Consensus 265 ~~~~~~i~l~~~li~~----~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~-~-~~~~~----~~~~~~~~~~~~l~~~~p 334 (548)
+..++|+++++++++. +++|+.|+++|+.+++++..++..+++.++ + ..+.+ +.+++++.+++++|+|+|
T Consensus 188 ~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P 267 (478)
T PRK10189 188 GMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGIP 267 (478)
T ss_pred HHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhcc
Confidence 9999999999999874 479999999999999999988776665432 1 11111 123578899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHHH
Q 008932 335 VFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIG 414 (548)
Q Consensus 335 ~~~~~~~~~~~~~i~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~ 414 (548)
.++........+.+.+.+++++|++++|+|+++.++.++.+++..|++++.+++++ +++|+ ||++++|+..+.+.+++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg-~~~Ga-~~~~~a~~~~~~~~~~~ 345 (478)
T PRK10189 268 ASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITG-TRLGK-GQIAQAERQLRHVFWLS 345 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC-CCHHHHHHHHHHHHHHH
Confidence 99999999999988888899999999999999999999999999999999999995 59999 99999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHH-HHHHHHHH
Q 008932 415 STLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSG-CFLLGALV 493 (548)
Q Consensus 415 ~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~v~~~~ 493 (548)
+.+++..+++++++++++.++|++|+|+.+....++++.++..++++.+.+..+.++|.||++.++..++. .+++.+|+
T Consensus 346 ~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~ 425 (478)
T PRK10189 346 TLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVA 425 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987654 45777887
Q ss_pred HHHH--HhcCCchhHHHHHHHHHHHHHHHHHHHHHcCCCccccccccHHHHHH
Q 008932 494 LLFA--SRGYGLPGCWFALVCFQSARFLLSLWRLLSPDGTLYSEDLNRYKMEK 544 (548)
Q Consensus 494 ~~~~--~~~~G~~G~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 544 (548)
.+++ ..++|+.|+|++..++++++.++.++++++.+|.....+...+++||
T Consensus 426 ~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~~~~~~~~~~~~ 478 (478)
T PRK10189 426 GYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWKYPRPEPQKCEK 478 (478)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccCCCCCCcccccC
Confidence 7644 45799999999999999999999999999999977555555555543
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.7e-49 Score=413.84 Aligned_cols=428 Identities=18% Similarity=0.199 Sum_probs=385.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHH
Q 008932 103 SQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQ 182 (548)
Q Consensus 103 ~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~lG~~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~ 182 (548)
++.|+++++++|.+++++++.+.+++|+.+++|+|++++|+++++.++.+++..+..|++.+.+++++|++|++|+|+++
T Consensus 7 ~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~~ 86 (464)
T PRK00187 7 TELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEGAT 86 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH
Confidence 45699999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHHH
Q 008932 183 HQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKA 262 (548)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 262 (548)
+..++++.+.++++++..++.+ +.++++.+++. |+|+.+.+..|+++..++.|+..+....++++|+.|+++.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~--~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 87 RLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQ--APQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 9999999999999998877765 67899999966 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHhhh----cCcchhhHHHHHHHHHHHHHHHHHHHHhhccc-ccc----cccCCChhHHHHHHHhhH
Q 008932 263 LAVASAINGIGDVALCSF----LGYGIAGAAWATMVSQVVSAYMMIQSLNNKGY-NAF----SFSVPSTNELATILGLAG 333 (548)
Q Consensus 263 ~~~~~~~~i~l~~~li~~----~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~l~~~~ 333 (548)
+++..++|+++|++|++. +++|+.|+++|+.+++.+..+.+.+++++++. .+. +..+++++.+|+++|+|+
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~ 243 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGL 243 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhh
Confidence 999999999999999864 25899999999999998887766656554321 111 123567888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHH
Q 008932 334 PVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLI 413 (548)
Q Consensus 334 p~~~~~~~~~~~~~i~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~ 413 (548)
|.+++.+.+...+.+++.+++++|++++|+++++.++..+...+..+++.+.++++++ ++|+ ||++++++..+.++.+
T Consensus 244 P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq-~~Ga-~~~~~~~~~~~~~l~~ 321 (464)
T PRK00187 244 PIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQ-HYGA-GRLLEARRAGRVGIGF 321 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999955 9999 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccC--CH---HHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHHH-
Q 008932 414 GSTLGLVLGTIGASVPWFFPNIFTS--DK---SVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCF- 487 (548)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~i~~lf~~--d~---~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~- 487 (548)
++.++++.+++++++++++.++|++ |+ |+.+....++++.....++++.+.++.+++||.||+|.++...+...
T Consensus 322 ~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~ 401 (464)
T PRK00187 322 GAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYW 401 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHH
Confidence 9999999999999999999999974 44 67888899999999999999999999999999999999999887764
Q ss_pred HHHHHHHHHHH--hcCCchhHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Q 008932 488 LLGALVLLFAS--RGYGLPGCWFALVCFQSARFLLSLWRLLSPDGTLYSE 535 (548)
Q Consensus 488 ~v~~~~~~~~~--~~~G~~G~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~ 535 (548)
++++|+.+++. +++|+.|+|+++.+++++..+....+++.++|.+.++
T Consensus 402 ~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 451 (464)
T PRK00187 402 LVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTARLLRK 451 (464)
T ss_pred HHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 88888887554 5689999999999999999888777776655554333
No 4
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.8e-48 Score=402.45 Aligned_cols=418 Identities=20% Similarity=0.241 Sum_probs=370.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ChhHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHH
Q 008932 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQG-SSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNE 180 (548)
Q Consensus 102 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~l-G~~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~ 180 (548)
+++.|+++++++|.++++++..+++++|+.++||+ |++++|+.+++.++.++...+..+++.+.+++++|++|+||+|+
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 45679999999999999999999999999999998 67789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHH
Q 008932 181 VQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPL 260 (548)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 260 (548)
+++..++++.++++++++..++...+.++++.+++. |+|+.+.+.+|+++.+++.|+..+..++++++|+.|+++.++
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 162 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGG--SEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPV 162 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999988888889999999966 779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhhcc-ccccc--ccCCC-hhHHHHHHHhhHHHH
Q 008932 261 KALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKG-YNAFS--FSVPS-TNELATILGLAGPVF 336 (548)
Q Consensus 261 ~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~-~~~~~--~~~~~-~~~~~~~l~~~~p~~ 336 (548)
+..+++.++|++++++|++.+++|+.|+++|+.+++.+..++..+++.++. .++.+ ..+++ ++.+++++|+|.|.+
T Consensus 163 ~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~ 242 (441)
T PRK10367 163 ILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIM 242 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHH
Confidence 999999999999999999888999999999999999999887766665432 22111 12223 347899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHHHHH
Q 008932 337 ITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGST 416 (548)
Q Consensus 337 ~~~~~~~~~~~i~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~ 416 (548)
+....+...+.+.+.+++++|++++|+|+++.++.++.+++..|++++.+|+++ +++|+ ||++++|+..+.+.+++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg-~~~Ga-~~~~~a~~~~~~~~~~~~~ 320 (441)
T PRK10367 243 LRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSG-QAYGA-RDGSQLLDVWRAACRQSGI 320 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHcC-CCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999995 59999 9999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhh----hhhHhhhhhhhccCCchhHHHHHHHHHHHHHH
Q 008932 417 LGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVS----PSTHSLEGTLLAGRDVKFFSISMSGCFLLGAL 492 (548)
Q Consensus 417 ~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~~ 492 (548)
++.+.+++++++++++.++|++|+|+.+....++++..+..+.. ....++.+.++|. |+|.++..+.....+
T Consensus 321 ~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~-dt~~~~~~~~~~~~~--- 396 (441)
T PRK10367 321 VALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAA-EMRNSMAVAAAGFAL--- 396 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchH-HHHHHHHHHHHHHHH---
Confidence 99999999999999999999999999999999998877543322 2233466666666 899999887765442
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHcC
Q 008932 493 VLLFASRGYGLPGCWFALVCFQSARFLLSLWRLLSP 528 (548)
Q Consensus 493 ~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~l~~~ 528 (548)
.....+++|+.|+|+++.+++.++.++..++++++
T Consensus 397 -~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~ 431 (441)
T PRK10367 397 -TLLTLPWLGNHGLWLALTVFLALRGLSLAAIWRRH 431 (441)
T ss_pred -HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122468999999999999999999988888765
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=7.8e-48 Score=400.78 Aligned_cols=419 Identities=16% Similarity=0.137 Sum_probs=386.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ChhHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHH
Q 008932 105 MKEIVMFTGPATGLWLCGPLMSLIDTAVIGQG-SSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQH 183 (548)
Q Consensus 105 ~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~l-G~~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~ 183 (548)
.|+++++++|.+++++.+.+++++|+.++|++ |++++|+++++.++.++...+..+++.+..++++|++|+||+|+.++
T Consensus 11 ~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~ 90 (453)
T PRK09575 11 YRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEKAKR 90 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHHHHH
Confidence 48999999999999999999999999999995 99999999999999999888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 008932 184 QISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKAL 263 (548)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 263 (548)
..++++.++++++++..++.+.++++++.+++. |+|+.+.+..|+++..++.|+..+.....+++|+.|+++.+++.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~--~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 168 (453)
T PRK09575 91 ILTTGLLLLLLLGPIVSVILFLFADDFLRAQGA--EGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLM 168 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 999999999999999999999999999999965 778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhhccc-ccc--cccCCChhHHHHHHHhhHHHHHHHH
Q 008932 264 AVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGY-NAF--SFSVPSTNELATILGLAGPVFITMI 340 (548)
Q Consensus 264 ~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~p~~~~~~ 340 (548)
+++.++|+++++++++.+++|+.|+++|+.+++.+..++.++++++++. .++ +..+++++.+|+++++|.|.+++..
T Consensus 169 ~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~ 248 (453)
T PRK09575 169 VIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMYL 248 (453)
T ss_pred HHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHHH
Confidence 9999999999999998889999999999999999999887776654432 222 2235677889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 008932 341 SKVAFYSLIIYFATSMGT-NTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGL 419 (548)
Q Consensus 341 ~~~~~~~i~~~~~~~~g~-~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~ 419 (548)
.+.....+...+.+++|+ +++|+|++..++..+...+..+++.+.+|.+++ ++|+ ||++++|+..+.++++++..++
T Consensus 249 ~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~-~~Ga-~~~~~~~~~~~~~l~l~~~~~~ 326 (453)
T PRK09575 249 YGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSY-YFGA-RQYDNIKKLLKLAMKVTVLAGI 326 (453)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HhcC-CChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999985 689999999999999999999999999999965 9999 9999999999999999999999
Q ss_pred HHHHHHHhhhhhhcccccC-CHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHH
Q 008932 420 VLGTIGASVPWFFPNIFTS-DKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLLFAS 498 (548)
Q Consensus 420 ~~~~~~~~~~~~i~~lf~~-d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~~~~~~~~ 498 (548)
+.+++++.+++++..+|++ |+|+.+....++++..+..++++.+.+..+.++|.||++.++..+....++++|..+.+.
T Consensus 327 ~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~ip~~~ll~ 406 (453)
T PRK09575 327 AWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNMLIQLPFLFILP 406 (453)
T ss_pred HHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999995 789999999999999999999999999999999999999999888877788999988887
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHc
Q 008932 499 RGYGLPGCWFALVCFQSARFLLSLWRLLS 527 (548)
Q Consensus 499 ~~~G~~G~~~a~~~~~~~~~~~~~~~l~~ 527 (548)
+.+|+.|+|+++.+++++..+...+++++
T Consensus 407 ~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 407 KWLGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999998877766654
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=2.1e-47 Score=399.37 Aligned_cols=429 Identities=18% Similarity=0.148 Sum_probs=391.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChH
Q 008932 100 SIWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKN 179 (548)
Q Consensus 100 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~lG~~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~ 179 (548)
+.++++|+++++++|.+++++...+.+.+|+.+++++|++++++++.+.++......+..|++.+..+.++|++|++|++
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 34566799999999999999999999999999999999999999999998887777788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhH
Q 008932 180 EVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGP 259 (548)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 259 (548)
+.++.+++++.+.++++++++++.+.+++++..+++. |+|+.+.+..|+++.+++.|+..+..++++++|+.|+++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNL--EPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 9999999999999999999999999899999999865 77889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHhhh----cCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc-c----ccccCCChhHHHHHHH
Q 008932 260 LKALAVASAINGIGDVALCSF----LGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYN-A----FSFSVPSTNELATILG 330 (548)
Q Consensus 260 ~~~~~~~~~~~i~l~~~li~~----~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~l~ 330 (548)
++.++++.++|+++++++++. +++|+.|+++|+.+++++..++..+++++++.. . .++.+++++.+|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 999999999999999999853 468999999999999999999888777654321 1 1123457788999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHH
Q 008932 331 LAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSL 410 (548)
Q Consensus 331 ~~~p~~~~~~~~~~~~~i~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~ 410 (548)
+++|.+++...+...+.++..+++++|++++|++++..++.++...++.+++.+.++.+++ ++|+ ||++++|+..+.+
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~-~~Ga-~~~~~~~~~~~~~ 321 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGF-ELGA-GRTLDARQYAYIG 321 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-CCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999955 9999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHHH-HH
Q 008932 411 LLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCF-LL 489 (548)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~v 489 (548)
+++++.++++.+++++.+++++..+|++|+++.+....++++..+..++++++.+..++++|.||++.+++..+... ++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~ 401 (456)
T PRK01766 322 LAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVL 401 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887654 77
Q ss_pred HHHHHHHHH--hcCCchhHHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 008932 490 GALVLLFAS--RGYGLPGCWFALVCFQSARFLLSLWRLLSPDGTL 532 (548)
Q Consensus 490 ~~~~~~~~~--~~~G~~G~~~a~~~~~~~~~~~~~~~l~~~~~~~ 532 (548)
++|+.+.+. +++|+.|+|+|+.++.++..++.++++++.+|+.
T Consensus 402 ~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 402 GLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777543 5689999999999999999999998888765443
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=5.7e-36 Score=317.62 Aligned_cols=418 Identities=14% Similarity=0.047 Sum_probs=355.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhHh-hhhcchhHHHHHHHHHH--HHHHHHHHHHHHHHHhhcChHHHHH
Q 008932 108 IVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVEL-AALGPGTVMCDYLTYVF--MFLSIATSNMVATSLARQDKNEVQH 183 (548)
Q Consensus 108 i~~~~~p~~~~~~~~~~~~~v~~~~ig~-lG~~~l-a~~~~~~~i~~~~~~~~--~gl~~a~~~~~s~~~g~~~~~~~~~ 183 (548)
+.|.+.-.++++++..+++++|..++++ +|++++ ++++.+.++.+.+..+. .|++.+..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5688889999999999999999999999 899999 79999999987776554 357777777666553322 56776
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHHH
Q 008932 184 QISVLLFVGL-ACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKA 262 (548)
Q Consensus 184 ~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 262 (548)
.+.+++.... ..+++..++.+++++++..++..+.|+|..+.+..|++++.++.++..+..+.++++|+.|+++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 6766655555 444455677778888888887433356777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHhhhcCcchhhHH--HHHHHHHHHHHHHHHHHHhhcccccccccCCChhHHHHHHHhhHHHHHHHH
Q 008932 263 LAVASAINGIGDVALCSFLGYGIAGAA--WATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMI 340 (548)
Q Consensus 263 ~~~~~~~~i~l~~~li~~~~~Gi~Gaa--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~ 340 (548)
+++.++++++..+++ ..++|..|++ +++.+++.+..++.+++.+|++.+.+...+.+++.+|++++++.|..++..
T Consensus 160 ~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~ 237 (502)
T TIGR01695 160 PILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFRDPGLKRFLKLFLPTTLGSS 237 (502)
T ss_pred HHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCCChhHHHHHHHHHHHHHHHH
Confidence 999988877643333 4678999988 999999999988887777665422222234567889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH-hchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 008932 341 SKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCS-VWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGL 419 (548)
Q Consensus 341 ~~~~~~~i~~~~~~~~g~~~~aa~~i~~~i~~l~~-~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~ 419 (548)
..++...++..+.+.+|++++++|+++.++.+++. .+..+++++..|.+++ ++|+ ||++++|+..+++.++...+++
T Consensus 238 ~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 315 (502)
T TIGR01695 238 ASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSR-HASE-GNWNELRDLLNQGIRLSLLLTI 315 (502)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-CCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877789999999999999998875 4688999999999976 7888 9999999999999999999999
Q ss_pred HHHHHHHhhhhhhcccccC----CHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHHHHHHHHHHH
Q 008932 420 VLGTIGASVPWFFPNIFTS----DKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLL 495 (548)
Q Consensus 420 ~~~~~~~~~~~~i~~lf~~----d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~~~~~ 495 (548)
+.+++++++++++..+|.+ |++..+....++.++++..++.+++.++.+.+++.||+|.+++.+....++++++++
T Consensus 316 ~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~ 395 (502)
T TIGR01695 316 PSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSL 395 (502)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHH
Confidence 9999999999999988865 567778889999999999999999999999999999999999999888899999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 008932 496 FASRGYGLPGCWFALVCFQSARFLLSLWRLLSPDGT 531 (548)
Q Consensus 496 ~~~~~~G~~G~~~a~~~~~~~~~~~~~~~l~~~~~~ 531 (548)
.+.+.+|+.|+|++..+++.+..++..++++|+...
T Consensus 396 ~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~ 431 (502)
T TIGR01695 396 LLIFPLGLVGIALATSAASMVSSVLLYLMLNRRLKG 431 (502)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 888889999999999999999999988888877544
No 8
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=2e-38 Score=324.67 Aligned_cols=430 Identities=19% Similarity=0.178 Sum_probs=392.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcChHH
Q 008932 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYL-TYVFMFLSIATSNMVATSLARQDKNE 180 (548)
Q Consensus 102 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~lG~~~la~~~~~~~i~~~~-~~~~~gl~~a~~~~~s~~~g~~~~~~ 180 (548)
+.|.|++++++.|+++..+.++..+++++.++||+|+.++|+.+++.++.+.. ..+..|+..+.+++|+|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 67889999999999999999999999999999999999999999999999886 55558999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHH
Q 008932 181 VQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPL 260 (548)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 260 (548)
...+.+++..+....+++...+ +.+.++++..+++ |+++...+..|.++..+..+.+........++|++++..+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq--~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQ--DPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCC--ChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 9999999999999999999887 5688999999977 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhhcc-cccccccCCChhHHHHHHHhhHHHHHHH
Q 008932 261 KALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKG-YNAFSFSVPSTNELATILGLAGPVFITM 339 (548)
Q Consensus 261 ~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~p~~~~~ 339 (548)
++.....++|+.+++++++.+++|+.|++++..+++++....+..|....+ ...+......++++++++++++|.+++.
T Consensus 181 ~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~~~~~~~~~~lai~s~~mi 260 (473)
T KOG1347|consen 181 VIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGEFDSWGPFFALAIPSAVMI 260 (473)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHhhhhHHHHHHHhhcchhee
Confidence 999999999999999999999999999999999999999998888876543 1112211122899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHHHHHH
Q 008932 340 ISKVAFYSLIIYFATSMG--TNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTL 417 (548)
Q Consensus 340 ~~~~~~~~i~~~~~~~~g--~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~ 417 (548)
+.|+|.+++..++.+.++ ..++++.++..++....++++.+++.++.+++ +|.+|+ |+++.+|...+.+...++.+
T Consensus 261 clE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv-~neLGa-g~p~~ar~~~~v~~~~~~~~ 338 (473)
T KOG1347|consen 261 CLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRV-SNELGA-GKPKRARVSAKVALQTSVAI 338 (473)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHcC-CChhhhhhHHHHHHHHHHHH
Confidence 999999999999999996 58999999999999999999999999999988 569999 99999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHH-HHHHHHHHH-
Q 008932 418 GLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGC-FLLGALVLL- 495 (548)
Q Consensus 418 ~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~~v~~~~~~- 495 (548)
+...+..++.+++.+..+|++|+++.+.+.++.+++++..+.++.+.++.++.+|.|.++...+.++.+ +++++|..+
T Consensus 339 g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~ 418 (473)
T KOG1347|consen 339 GASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLY 418 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeE
Confidence 999999999999999999999999999999999999999999999999999999999999998877655 466666655
Q ss_pred -HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 008932 496 -FASRGYGLPGCWFALVCFQSARFLLSLWRLLSPDGTLYSED 536 (548)
Q Consensus 496 -~~~~~~G~~G~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~ 536 (548)
.+..++|..|+|+|+..+..+..........+.+|.....+
T Consensus 419 l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~ 460 (473)
T KOG1347|consen 419 LGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEK 460 (473)
T ss_pred EEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHH
Confidence 55578999999999999988888888888888888765544
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.6e-34 Score=291.07 Aligned_cols=336 Identities=24% Similarity=0.316 Sum_probs=308.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccChhHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q 008932 114 PATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQISVLLFVGL 193 (548)
Q Consensus 114 p~~~~~~~~~~~~~v~~~~ig~lG~~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 193 (548)
|.++++++..+.+.+|+.+++++|++++++++++.++.++...+..|++++..+.+++++|++|+|+.++..++.+.+..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q 008932 194 ACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIG 273 (548)
Q Consensus 194 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l 273 (548)
.++++.+++.+++++++..+++. |++..+.+..|++++++..++..+..+..+++|+.|+++.+++.++++.++++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~ 158 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGA--DGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIIL 158 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999998864 5678889999999999999999999999999999999999999999999999999
Q ss_pred hHHHhh-hcC-cchhhHHHHHHHHHHHHHHHHHHHHhhcccccc---cccCCChhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 008932 274 DVALCS-FLG-YGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAF---SFSVPSTNELATILGLAGPVFITMISKVAFYSL 348 (548)
Q Consensus 274 ~~~li~-~~~-~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~i 348 (548)
+++++. .++ +|+.|+++++.+++.+..++.+++.+|+...+. +..+.+++.+|+++++|+|.++..+..++.+.+
T Consensus 159 ~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~ 238 (342)
T TIGR00797 159 NYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFAL 238 (342)
T ss_pred hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 998886 567 889999999999999999888777765322221 234567889999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008932 349 IIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGASV 428 (548)
Q Consensus 349 ~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (548)
++.+++.+|++++++|+++.++.+++..+..+++.+..|.+++ ++|+ ||.+++++..++++++.+.++++.+++++++
T Consensus 239 ~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (342)
T TIGR00797 239 LALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQ-ALGA-GDPKRAKEVARVALKLSLLLGLVLAIILILF 316 (342)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999966 7888 9999999999999999999999999999999
Q ss_pred hhhhcccccCCHHHHHHHHHHHHHH
Q 008932 429 PWFFPNIFTSDKSVIQEMHKVLIPY 453 (548)
Q Consensus 429 ~~~i~~lf~~d~~~~~~~~~~l~~~ 453 (548)
++++.++|++|+++.+.+..++++.
T Consensus 317 ~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 317 REFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999988888887653
No 10
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=4.9e-33 Score=294.18 Aligned_cols=410 Identities=13% Similarity=0.100 Sum_probs=348.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhHhhhhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHhhcChHHHHHHHH
Q 008932 109 VMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKNEVQHQIS 186 (548)
Q Consensus 109 ~~~~~p~~~~~~~~~~~~~v~~~~ig~-lG~~~la~~~~~~~i~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~~~~~ 186 (548)
.|.+.|.++++++..+.+++|+.+++| +|++++|+++.+.++.++...+. .|++.+..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 79999999999999988887766 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 008932 187 VLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVA 266 (548)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 266 (548)
.++.+.++.+++.+++++.+++++...+++ |++. ..++++.++..++..+....++++|+.++++..+..++++
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~--~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLK--DERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcC--ChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 999999999999998888889888877654 3332 4578888999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHhh-----hcCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc--cc---ccCCChhHHHHHHHhhHHHH
Q 008932 267 SAINGIGDVALCS-----FLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNA--FS---FSVPSTNELATILGLAGPVF 336 (548)
Q Consensus 267 ~~~~i~l~~~li~-----~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~l~~~~p~~ 336 (548)
.++++.++..++. ..+.|+.|+++++.+++.+..++.+++++|+.+.+ .+ ..+.+++.+|+++++++|.+
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~ 235 (488)
T TIGR02900 156 QIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLT 235 (488)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHH
Confidence 9998877655543 22467888999999999999887766655432211 11 12345678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc----C---hH---HHHHH-HHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCHHHHHH
Q 008932 337 ITMISKVAFYSLIIYFATSM----G---TN---TVAAH-QVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARM 405 (548)
Q Consensus 337 ~~~~~~~~~~~i~~~~~~~~----g---~~---~~aa~-~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~ 405 (548)
++++..++...+++.+++++ | .+ .++.| +++.++..++..+..+++++..|.+++ .+|+ ||++++++
T Consensus 236 l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~-~~~~-~~~~~~~~ 313 (488)
T TIGR02900 236 LSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISE-AMAK-KNYSSIEK 313 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHH-HHHc-CCHHHHHH
Confidence 99999999999999888764 2 12 22223 355677777888889999999999966 7788 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHH
Q 008932 406 LLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSG 485 (548)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 485 (548)
..++.+++...++.+.++.+..+++++..+|.++++ +..+++++++..++...+.+..+.+++.||+|..++.+..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 389 (488)
T TIGR02900 314 RINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLI 389 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 999999999999999999999999999988875543 4567888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hcCCchhHHHHHHHHHHHHHHHHHHHHHcCCC
Q 008932 486 CFLLGALVLLFAS--RGYGLPGCWFALVCFQSARFLLSLWRLLSPDG 530 (548)
Q Consensus 486 ~~~v~~~~~~~~~--~~~G~~G~~~a~~~~~~~~~~~~~~~l~~~~~ 530 (548)
+.++++++++.+. +.+|+.|+|++..+++++..++..+..+|..+
T Consensus 390 ~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~~~ 436 (488)
T TIGR02900 390 GAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKNIR 436 (488)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999988776 88999999999999999999999888877554
No 11
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=1.2e-30 Score=270.00 Aligned_cols=396 Identities=14% Similarity=0.070 Sum_probs=353.1
Q ss_pred cCh-hHhhhhcchhHHHHHHHHHH--HHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 008932 136 GSS-VELAALGPGTVMCDYLTYVF--MFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALT 212 (548)
Q Consensus 136 lG~-~~la~~~~~~~i~~~~~~~~--~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 212 (548)
+|. .+..++.++.++.+++..+. .++..+..|...+.. ++++|+.++..++.+.+...+.+.++++.+++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 564 45668999999999998665 358999999999998 88999999999999999999999999999999999999
Q ss_pred hccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhHHHhhhcCcc---hhhHH
Q 008932 213 AFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLGYG---IAGAA 289 (548)
Q Consensus 213 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G---i~Gaa 289 (548)
++..+.|++..+.+.++++++.+..++..+..++.+++|+++|...+....++.++..++..+++. ...| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHH
Confidence 997666889999999999999999999999999999999999999999999998877666444333 4456 88999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 008932 290 WATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQ 369 (548)
Q Consensus 290 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~~~~~g~~~~aa~~i~~~ 369 (548)
++..++..++.++.+...+|.+.+.....+...+++|++++...|..+.....++...+++.+++.+++..+++++.+.+
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~ 241 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQR 241 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 99999999999999998888765433334556778999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc----CCHHHHH
Q 008932 370 TYGMC-SVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFT----SDKSVIQ 444 (548)
Q Consensus 370 i~~l~-~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~----~d~~~~~ 444 (548)
+.+++ ..+..+++++..|.+++ ...+ ||.++.++..+++++....+.+|.++.+..+++++.++.. -|.+..+
T Consensus 242 l~~lp~~i~~~~i~tv~~P~ls~-~~~~-~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~ 319 (451)
T PF03023_consen 242 LYQLPLGIFAVSISTVVFPKLSR-LAAE-GDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQ 319 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHH
Confidence 99997 57888999999999977 5565 9999999999999999999999999999999999996542 3667778
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Q 008932 445 EMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLLFASRGYGLPGCWFALVCFQSARFLLSLWR 524 (548)
Q Consensus 445 ~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~ 524 (548)
....++.+++++.++.+++.++...+++.+|+|.++..+....++++.+.+.+.+.+|..|+.++..++.++..++.++.
T Consensus 320 ~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~~g~~Glala~sl~~~i~~~~l~~~ 399 (451)
T PF03023_consen 320 LTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPFFGVAGLALATSLSAIISALLLYIL 399 (451)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcccccc
Q 008932 525 LLSPDGTLYSED 536 (548)
Q Consensus 525 l~~~~~~~~~~~ 536 (548)
++|+.+....+.
T Consensus 400 l~r~~~~~~~~~ 411 (451)
T PF03023_consen 400 LRRRLGLFSFRK 411 (451)
T ss_pred HHHHcCCcchhH
Confidence 998877544333
No 12
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=7.3e-30 Score=259.27 Aligned_cols=426 Identities=13% Similarity=0.029 Sum_probs=370.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChh-HhhhhcchhHHHHHHHHHH--HHHHHHHHHHHHHHHhhcChHHH
Q 008932 106 KEIVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSV-ELAALGPGTVMCDYLTYVF--MFLSIATSNMVATSLARQDKNEV 181 (548)
Q Consensus 106 ~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~-lG~~-~la~~~~~~~i~~~~~~~~--~gl~~a~~~~~s~~~g~~~~~~~ 181 (548)
..++|.++-....+++..+.+++...+++. +|.. ...++.++..+.|++.-++ ..++++..|...++..+++.|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 567888999999999999999999999988 8874 5568999999999998777 56899999999999877767777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCC-cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHH
Q 008932 182 QHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPR-NVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPL 260 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 260 (548)
++..+....+...+.+.++++..++++++.+...++. |++....+....+++.|.+++..+..+..+++|+.++...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 7776666667888888888888889999995554432 333333688889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCChhHHHHHHHhhHHHHHHHH
Q 008932 261 KALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMI 340 (548)
Q Consensus 261 ~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~ 340 (548)
+..+..++.-+.....+..+...-..+.+|++.++.+++.++.++.++|.+....+.+..+.+++|++.+.-.|..+...
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~~~lk~~~~~~~p~~l~~s 246 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFLKLMLPALLGVS 246 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 99999998877555544433222467889999999999999999999988754444445566899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 008932 341 SKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMC-SVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGL 419 (548)
Q Consensus 341 ~~~~~~~i~~~~~~~~g~~~~aa~~i~~~i~~l~-~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~ 419 (548)
..++...+++.+++.+.+.+++.+++++++.+++ ..+..+++++..|.+++ +... +|.+++++..+.+++++.++++
T Consensus 247 isQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr-~~~~-~~~~~~~~~l~~~i~l~lll~l 324 (518)
T COG0728 247 ISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSR-HAAN-GDWPEFLKLLDWGLRLTLLLTL 324 (518)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhhc-CChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 69999999999999987 5455 8999999999999999999999
Q ss_pred HHHHHHHhhhhhhccc-cc---CCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHHHHHHHHHHH
Q 008932 420 VLGTIGASVPWFFPNI-FT---SDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLL 495 (548)
Q Consensus 420 ~~~~~~~~~~~~i~~l-f~---~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~~~~~ 495 (548)
|.++.+.++++++.++ |. -+++......+.+..|.++.++.....++...+++.+|+|.|+++.+...++++.+++
T Consensus 325 P~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~ 404 (518)
T COG0728 325 PASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNL 404 (518)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHH
Confidence 9999999999999954 42 2455567889999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHcCCCccc
Q 008932 496 FASRGYGLPGCWFALVCFQSARFLLSLWRLLSPDGTLY 533 (548)
Q Consensus 496 ~~~~~~G~~G~~~a~~~~~~~~~~~~~~~l~~~~~~~~ 533 (548)
.+.+.+|..|+.++..++.+++..+.++.++|+....+
T Consensus 405 ~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~ 442 (518)
T COG0728 405 LLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP 442 (518)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999988888776554
No 13
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=7.6e-31 Score=271.12 Aligned_cols=402 Identities=12% Similarity=0.009 Sum_probs=334.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhHhhhhcchhHHHHHHHHH-HHHHHHHHHHHHHHHHhhcChHHHHHHH
Q 008932 108 IVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYV-FMFLSIATSNMVATSLARQDKNEVQHQI 185 (548)
Q Consensus 108 i~~~~~p~~~~~~~~~~~~~v~~~~ig~-lG~~~la~~~~~~~i~~~~~~~-~~gl~~a~~~~~s~~~g~~~~~~~~~~~ 185 (548)
+.|.+.....+.++..+.+++...++.+ +|++++|..+...++..++..+ ..|++.+....++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5677888889999999999999999999 8999999999888888777666 478888888889988 68888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 008932 186 SVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAV 265 (548)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 265 (548)
+.++.+.+..+++++++.+.+.+++...+++ +++ -..+..+..+..++..+.....+.+|+.|+++.++...++
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~ 154 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFG--HTD----YQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIV 154 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--Chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988765 333 2456666666677778888999999999999999999999
Q ss_pred HHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhhccccccc--ccCCChhHHHHHHHhhHHHHHHHHHHH
Q 008932 266 ASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFS--FSVPSTNELATILGLAGPVFITMISKV 343 (548)
Q Consensus 266 ~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~p~~~~~~~~~ 343 (548)
+.++|+.+ +++... ..|+.|+++|+.+++.+..+...++++|++..+.+ ..+++++.+|+++++|.|..+++...+
T Consensus 155 ~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~g~p~~~~~~~~~ 232 (416)
T PRK15099 155 GSLIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAGQLGKFTLMALITSVTLP 232 (416)
T ss_pred HHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999877 444432 23999999999999999887776666554322221 335678889999999999999999999
Q ss_pred HHHHHHHHHHH-hcChHHHHHHHHHHHHHHH-HHhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008932 344 AFYSLIIYFAT-SMGTNTVAAHQVMIQTYGM-CSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVL 421 (548)
Q Consensus 344 ~~~~i~~~~~~-~~g~~~~aa~~i~~~i~~l-~~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (548)
+....++.+++ .+|++++++|+++.++.+. ...+..+++++..|.+++ + +|.++.++..++..+....++.+.
T Consensus 233 i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~-~----~~~~~~~~~~~~~~~~~~~~~~~~ 307 (416)
T PRK15099 233 VAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSR-L----TEKRDITREIVKALKFVLPAVAAA 307 (416)
T ss_pred HHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c----CChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998886 7899999999999999875 488999999999999965 2 678999999999999999999999
Q ss_pred HHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 008932 422 GTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLLFASRGY 501 (548)
Q Consensus 422 ~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~ 501 (548)
++.++++++++..+|.+|+ .+.+.+++++..+..++...+..+...+.+.++++......+....+.+++++.+.+.+
T Consensus 308 ~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li~~~ 385 (416)
T PRK15099 308 SFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLIPLH 385 (416)
T ss_pred HHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998766 22356677777777776666665555555677777777778888889999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 008932 502 GLPGCWFALVCFQSARFLLSLWRLL 526 (548)
Q Consensus 502 G~~G~~~a~~~~~~~~~~~~~~~l~ 526 (548)
|..|++++..+++.+.+++......
T Consensus 386 G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 386 GALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886655443
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.95 E-value=4.4e-24 Score=225.84 Aligned_cols=397 Identities=13% Similarity=0.056 Sum_probs=319.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhHhhhhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHhhcChHHHHH
Q 008932 106 KEIVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKNEVQH 183 (548)
Q Consensus 106 ~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~-lG~~~la~~~~~~~i~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~~ 183 (548)
++..+-+....++++...+.+++...++.| +|+++.|.++.+..+.++...+. .|++.+.. | ++|.+ ++
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~---~~~~~--~~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----Q---RQDIS--HL 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----h---cccCC--HH
Confidence 567777888899999999999999999999 89999999999999888777655 67777553 2 12211 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 008932 184 QISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKAL 263 (548)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 263 (548)
..+..+.+.++.++++.++.+.+++++..+++ +++ ....+++..+..++..+.....+.+++.++.+......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~ 148 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH---NPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIE 148 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---Chh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence 45566677777777777777777777776653 223 24567888888888888899999999999999988888
Q ss_pred HHHHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCChhHHHHHHHhhHHHHHHHHHHH
Q 008932 264 AVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKV 343 (548)
Q Consensus 264 ~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~ 343 (548)
++..++..+....+. ..+.|..+.+++..++..+..++..+..++ ++++ ..+.+++.+|++++++.|...+.+..+
T Consensus 149 ~~~~i~~~~~~i~~~-~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~--~~~~~~~~~k~ll~~~~~~~~~~~~~~ 224 (492)
T PRK10459 149 ISAVVAGFTFAVVSA-FFWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRP--ALHFSLASVKPNLSFGAWQTAERIINY 224 (492)
T ss_pred HHHHHHHHHHHHHHH-HHCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCc--cceecHHHHHHHHhhhHHHHHHHHHHH
Confidence 888877776665554 357899999999999988877655433333 2221 123456789999999999999999999
Q ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHH-HhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008932 344 AFYSLIIYFATSM-GTNTVAAHQVMIQTYGMC-SVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVL 421 (548)
Q Consensus 344 ~~~~i~~~~~~~~-g~~~~aa~~i~~~i~~l~-~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (548)
+...+|+.+++.+ |+++++.|+.+.++.+++ ..+...++.+..|.+++ . + +|.++.++..++..++...+++|.
T Consensus 225 ~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~-~--~-~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 225 LNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAK-I--Q-DDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-h--c-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998886 999999999999999876 45666678888898865 3 4 789999999999999999999999
Q ss_pred HHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 008932 422 GTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLLFASRGY 501 (548)
Q Consensus 422 ~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~ 501 (548)
++.+.++++++..++.+++ ...+...+.++.+..++..........+++.||+|.....+.....+.++..+.+...+
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 378 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQLA 378 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999987665544 34577888888888888888888889999999999999888888888888888788889
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHcC
Q 008932 502 GLPGCWFALVCFQSARFLLSLWRLLSP 528 (548)
Q Consensus 502 G~~G~~~a~~~~~~~~~~~~~~~l~~~ 528 (548)
|+.|+.++..+++.+......+.+.|+
T Consensus 379 G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 379 GLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888877443
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.91 E-value=6.3e-21 Score=201.23 Aligned_cols=387 Identities=14% Similarity=0.075 Sum_probs=304.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhHhhhhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHhhcChHHHH
Q 008932 105 MKEIVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKNEVQ 182 (548)
Q Consensus 105 ~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~-lG~~~la~~~~~~~i~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~ 182 (548)
.+++.|.+.....+++...+.+++....++| +|+++.|.++.+.++..++..+. .|+..+....++++..++++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~ 84 (480)
T COG2244 5 KKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLI 84 (480)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHH
Confidence 3778899999999999999999999999999 89999999999999999998887 889999999998886555544444
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHH
Q 008932 183 HQ-ISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLK 261 (548)
Q Consensus 183 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 261 (548)
.. ....+...+..+.+.........+. .+.....+++..+..+........++.+|+.++.+....
T Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (480)
T COG2244 85 LLSVLLLLLLALILLLLLLLIAYLLAPI-------------DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLAL 151 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc-------------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 43 3333333333333333322211111 122356677888999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhh-cccccccccCCChhHHHHHHHhhHHHHHHHH
Q 008932 262 ALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNN-KGYNAFSFSVPSTNELATILGLAGPVFITMI 340 (548)
Q Consensus 262 ~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~ 340 (548)
..+.. ..-....+.+. ........++..++..........+..+ +++..+...+..++.+++.++.++|......
T Consensus 152 ~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~ 227 (480)
T COG2244 152 SIVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRFSLALLKELLRFGLPLLLSSL 227 (480)
T ss_pred HHHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHhhHHHHHHH
Confidence 84444 11111111111 1345566777777777766655555532 2222222223347899999999999999999
Q ss_pred HHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 008932 341 SKVAFYSLIIYFATSM-GTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGL 419 (548)
Q Consensus 341 ~~~~~~~i~~~~~~~~-g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~ 419 (548)
...+...+|+++++.+ |+++++.|+.+.++......+..+++.+..|.+++ ...+ |+.++.++..++..++...+++
T Consensus 228 ~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 305 (480)
T COG2244 228 LNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSR-AYAE-GDRKALKKLLRQSLKLLLLISI 305 (480)
T ss_pred HHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHH-HHHc-CcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 99999999988999999999999999999999977 6666 8999999999999999999999
Q ss_pred HHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHh
Q 008932 420 VLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLLFASR 499 (548)
Q Consensus 420 ~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~~~~~~~~~ 499 (548)
|..+++.++++++..++..++.. .....+.++.+..++.+........+++.|+++...+.+....++++.+++.+.+
T Consensus 306 p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~ 383 (480)
T COG2244 306 PALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLIP 383 (480)
T ss_pred HHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999998877655532 2677778888888888889999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHH
Q 008932 500 GYGLPGCWFALVC 512 (548)
Q Consensus 500 ~~G~~G~~~a~~~ 512 (548)
.+|+.|...+...
T Consensus 384 ~~g~~g~~~a~~~ 396 (480)
T COG2244 384 RFGLIGAAIATAS 396 (480)
T ss_pred hhhhhhHHHHHHH
Confidence 9999999999933
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=1e-20 Score=197.59 Aligned_cols=208 Identities=15% Similarity=0.093 Sum_probs=193.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHH
Q 008932 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEV 181 (548)
Q Consensus 102 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~lG~~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~ 181 (548)
++..|+++++++|.+++++++.....+++.+++++|++++|+++++.++..+...+..|++.+.+++++|++|+||+|++
T Consensus 232 ~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~ 311 (464)
T PRK00187 232 RAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEA 311 (464)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcc---cchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChh
Q 008932 182 QHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNV---HLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLG 258 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 258 (548)
++..+.++.++.+.+++.+++.+.+.+++.+++..++|+ |+.+.+..|+++.+++.++..++.++.+++|+.|+++.
T Consensus 312 ~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~ 391 (464)
T PRK00187 312 RRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDART 391 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHH
Confidence 999999999999999999999999999999999532233 68889999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 008932 259 PLKALAVAS-AINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNN 309 (548)
Q Consensus 259 ~~~~~~~~~-~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~ 309 (548)
+++..++.. ++++++++++.+.+++|+.|+++++.+++.+..++....++.
T Consensus 392 ~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 392 TFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 899999999998888999999999999999988777665543
No 17
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.86 E-value=7.7e-20 Score=191.16 Aligned_cols=205 Identities=15% Similarity=0.125 Sum_probs=189.1
Q ss_pred ChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCH
Q 008932 321 STNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSL 400 (548)
Q Consensus 321 ~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~ 400 (548)
+-+.+|+++++++|.+++++.......+++.+++++|++++|+++++.++..+...+..+++++..+.+++ ++|+ ||+
T Consensus 24 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq-~~Ga-~~~ 101 (478)
T PRK10189 24 RVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAF-SLGK-RDR 101 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-CCH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999965 9999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc--CCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchh
Q 008932 401 VKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFT--SDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKF 478 (548)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~ 478 (548)
+++++..+.++.+++.++++.+++.+.+++++..+|+ .|+|+.+...+++++..++.++..++.++.+.+||.||++.
T Consensus 102 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~ 181 (478)
T PRK10189 102 RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKI 181 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 9999999999999999999999999999999999995 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh------cCCchhHHHHHHHHHHHHHHHHHHHHHc
Q 008932 479 FSISMSGCFLLGALVLLFASR------GYGLPGCWFALVCFQSARFLLSLWRLLS 527 (548)
Q Consensus 479 ~~~~~~~~~~v~~~~~~~~~~------~~G~~G~~~a~~~~~~~~~~~~~~~l~~ 527 (548)
++..++...++++++.+++.. ++|+.|+|+|+.+++++..++..+.+.+
T Consensus 182 ~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 182 PLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred hHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999899999988876553 6899999999999999998876665543
No 18
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.86 E-value=7.4e-20 Score=189.56 Aligned_cols=208 Identities=19% Similarity=0.145 Sum_probs=198.2
Q ss_pred ChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCH
Q 008932 321 STNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSL 400 (548)
Q Consensus 321 ~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~ 400 (548)
.++..|+++++++|..+.++.......+|+.++++++++++|+-+++.++..++..+..+++.+..+.+++ .+|+ ||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq-~~Ga-~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQ-AIGA-GDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHcC-Cch
Confidence 45689999999999999999999999999999999999999999999999999999999999999999976 9999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHH
Q 008932 401 VKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFS 480 (548)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~ 480 (548)
+++++....++.++.+++++.+++.+.+.+++..++..++++.+.+.+++.+..++.++..+..++.+++|+.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCchhHHHHHHHHHHHHHHHHHHHHHcCCC
Q 008932 481 ISMSGCFLLGALVLLFASRG----YGLPGCWFALVCFQSARFLLSLWRLLSPDG 530 (548)
Q Consensus 481 ~~~~~~~~v~~~~~~~~~~~----~G~~G~~~a~~~~~~~~~~~~~~~l~~~~~ 530 (548)
+.+..+.++|+.+++.++.+ +|+.|+++|+++++++.+++..+.+.+++.
T Consensus 170 ~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999877665 899999999999999999998888887763
No 19
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.85 E-value=1.4e-19 Score=189.50 Aligned_cols=208 Identities=15% Similarity=0.117 Sum_probs=195.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHH
Q 008932 101 IWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNE 180 (548)
Q Consensus 101 ~~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~lG~~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~ 180 (548)
.++.+|++++.++|.+++.+.+.+...+++.+++++|++++|+++++.++.++...+..|++.+.++.++|++|+||+++
T Consensus 234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~ 313 (456)
T PRK01766 234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLD 313 (456)
T ss_pred CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 35567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHH
Q 008932 181 VQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPL 260 (548)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 260 (548)
+++..+.++.++..++++..++++.+++++..++.. |+|+.+.+..|+++..+..++..+..+..+++||.||++.++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 391 (456)
T PRK01766 314 ARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTD--DPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF 391 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence 999999999999999999999999999999999964 889999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 008932 261 KALAVAS-AINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNK 310 (548)
Q Consensus 261 ~~~~~~~-~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~ 310 (548)
+..+++. ++++++.+++...+++|+.|+++++.+++.+..++.++++++.
T Consensus 392 ~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 442 (456)
T PRK01766 392 FITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL 442 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 6788888988877889999999999999999999888777654
No 20
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.84 E-value=5.9e-19 Score=182.74 Aligned_cols=205 Identities=15% Similarity=0.093 Sum_probs=188.2
Q ss_pred ChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCC
Q 008932 321 STNELATILGLAGPVFITMISKVAFYSLIIYFATSM-GTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRS 399 (548)
Q Consensus 321 ~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~~~~~-g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~ 399 (548)
.+++.|+++|+++|.++.++.......+|+.+++++ |++++|+.+++.++..+...+..+++.+..+.+++ ++|+ ||
T Consensus 4 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq-~~Ga-~~ 81 (441)
T PRK10367 4 LTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQ-AFGA-KN 81 (441)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCC-CC
Confidence 456789999999999999999999999999999999 67899999999999999999999999999999965 9999 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhH
Q 008932 400 LVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFF 479 (548)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~ 479 (548)
++++++..+.++.++.+++++..++...+.+++..+++.|+|+.+...+++.+..++.++.....++.+.+|+.||+|.+
T Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 161 (441)
T PRK10367 82 PQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAP 161 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998888888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHHHHHHHHHc
Q 008932 480 SISMSGCFLLGALVLLFASR--GYGLPGCWFALVCFQSARFLLSLWRLLS 527 (548)
Q Consensus 480 ~~~~~~~~~v~~~~~~~~~~--~~G~~G~~~a~~~~~~~~~~~~~~~l~~ 527 (548)
+..++...++++++.+.+++ ++|+.|+++|+.+++++..++..+.+.+
T Consensus 162 ~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 162 VILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886554 6899999999999999988776665554
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.84 E-value=6.8e-19 Score=183.55 Aligned_cols=208 Identities=16% Similarity=0.092 Sum_probs=191.7
Q ss_pred ChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCC
Q 008932 321 STNELATILGLAGPVFITMISKVAFYSLIIYFATSM-GTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRS 399 (548)
Q Consensus 321 ~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~~~~~-g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~ 399 (548)
+++.+|+++++++|.+++++...+...+|+.+++++ |++++++++++.++..+...+..+++.+..+.+++ ++|+ ||
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq-~~Ga-~~ 84 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSI-KRGE-GD 84 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HhcC-CC
Confidence 456789999999999999999999999999999996 99999999999999999888899999999998865 8899 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhH
Q 008932 400 LVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFF 479 (548)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~ 479 (548)
++++++..+.++.++.+++++.+++++.+.+++..+|+.|+++.+...+++++..++.++..+.....+.+++.||++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~ 164 (453)
T PRK09575 85 LEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLA 164 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHHHHHHHHHcCCC
Q 008932 480 SISMSGCFLLGALVLLFASR--GYGLPGCWFALVCFQSARFLLSLWRLLSPDG 530 (548)
Q Consensus 480 ~~~~~~~~~v~~~~~~~~~~--~~G~~G~~~a~~~~~~~~~~~~~~~l~~~~~ 530 (548)
+..++.+.++++++.+.+++ ++|+.|+|+++.+++++..++..+++.+++.
T Consensus 165 ~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~ 217 (453)
T PRK09575 165 TGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRA 217 (453)
T ss_pred HHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 99999888999999876654 6899999999999999999887776665444
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.81 E-value=5.4e-17 Score=172.39 Aligned_cols=234 Identities=15% Similarity=0.031 Sum_probs=203.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHhhhhcchhHHHHHHHH-HHHHHHHHHHHHHHHHHhhcChHH
Q 008932 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTY-VFMFLSIATSNMVATSLARQDKNE 180 (548)
Q Consensus 102 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~lG~~~la~~~~~~~i~~~~~~-~~~gl~~a~~~~~s~~~g~~~~~~ 180 (548)
+++.|++++.++|..++++...+...+|+.+.+.+|++++++++.+..+.++... +..+++.+..|.+++++|++|+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 3567999999999999999999999999998666899999999999999887765 457899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCC--cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChh
Q 008932 181 VQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPR--NVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLG 258 (548)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 258 (548)
.++.+++++.+...++++.+++++.+++++..++.+++ |+|..+.+..++++.+++.++..+..+..+.+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 99999999999999999999999999999999987643 5577888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCChhHHHHHHHhhHHHHHH
Q 008932 259 PLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFIT 338 (548)
Q Consensus 259 ~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 338 (548)
+++..+...++|++++++++ +.+|+.|+++|+.+++.+..++..++.+|+.. .....+.++++.|...+..++
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~as~~m 451 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLI--FPLGLVGIALATSAASMVSSVLLYLMLNRRLK-----GILPFGVLKVLAKLVIASAII 451 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcC-----cCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999887 45899999999999999999888877776521 122355667777776666666
Q ss_pred HHHH
Q 008932 339 MISK 342 (548)
Q Consensus 339 ~~~~ 342 (548)
....
T Consensus 452 ~~~~ 455 (502)
T TIGR01695 452 GGVL 455 (502)
T ss_pred HHHH
Confidence 5443
No 23
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.74 E-value=3.8e-15 Score=154.59 Aligned_cols=207 Identities=15% Similarity=0.123 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHhhhhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHhhcChHHH
Q 008932 103 SQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKNEV 181 (548)
Q Consensus 103 ~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~lG~~~la~~~~~~~i~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~ 181 (548)
++.|++++...|..++.....+..++|+.+.+.+++..+++++.+..+.++...+. ..+++..-|..++...++|.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 45699999999999999999999999999999999999999999999999987665 79999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhH
Q 008932 182 QHQISVLLFVGLACGFLMLLFTRFFGSWALTAFT--GPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGP 259 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 259 (548)
++.+++.+...+.+.++.++.++.+++++.+++. +..|+|..+....++++.++++|+..+...+...+.+++|++.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 9999999999999999999999999999998886 45677788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008932 260 LKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKG 311 (548)
Q Consensus 260 ~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~ 311 (548)
++..+++.++|++++.++. +.+|..|.++|+.++.++..+++++.++|+.
T Consensus 355 ~~~~~~~~~lni~l~~~l~--~~~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLV--PFFGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998877 6689999999999999999999998887764
No 24
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.72 E-value=6e-18 Score=150.96 Aligned_cols=161 Identities=20% Similarity=0.248 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccChhHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q 008932 114 PATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQISVLLFVGL 193 (548)
Q Consensus 114 p~~~~~~~~~~~~~v~~~~ig~lG~~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 193 (548)
|.++++++..+.+.+|+.+++++|++++++++++..+.++...+..|++.|..+.++|++|++|+++.++.+++++.+.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHHH
Q 008932 194 ACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVAS-AINGI 272 (548)
Q Consensus 194 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~i~ 272 (548)
.++++.+++.+.+.+++..+++. |+|+.+.+..|+++..+..|+..+....++++++.|+++.+++..+++. +++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGN--DPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSS--TTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhh--hHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999965 7789999999999999999999999999999999999999999999999 99999
Q ss_pred hhHH
Q 008932 273 GDVA 276 (548)
Q Consensus 273 l~~~ 276 (548)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8874
No 25
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.72 E-value=1.6e-15 Score=152.86 Aligned_cols=192 Identities=18% Similarity=0.117 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHH
Q 008932 334 PVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLI 413 (548)
Q Consensus 334 p~~~~~~~~~~~~~i~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~ 413 (548)
|.++.++...+...+++.+++++|++++++++++.++..+...+..+++++..|.+++ ++|+ +|++++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~-~~g~-~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQ-AVGA-GNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH-HHCC-CChHHHHHHHHHHHHH
Confidence 6788899999999999999999999999999999999999999999999999999966 8898 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHHHHHHHHH
Q 008932 414 GSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALV 493 (548)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~~~ 493 (548)
...++++.+++++++++++..+|+.|++..+.+..+++++.+..++.+.+.+..+.+++.||.+..........++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~ 158 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIIL 158 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999878888888999999999999999999999999999999999999988888888887
Q ss_pred HHHHHh---c-CCchhHHHHHHHHHHHHHHHHHHHHHc
Q 008932 494 LLFASR---G-YGLPGCWFALVCFQSARFLLSLWRLLS 527 (548)
Q Consensus 494 ~~~~~~---~-~G~~G~~~a~~~~~~~~~~~~~~~l~~ 527 (548)
.+.+.. + +|+.|++++..++.++..++..+.+++
T Consensus 159 ~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 159 NYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 765554 3 569999999999999998888777665
No 26
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.70 E-value=1.2e-14 Score=153.79 Aligned_cols=203 Identities=14% Similarity=0.187 Sum_probs=176.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCh------hHhhhh----cchhHHHHHHHHHHHHHHHHHHHHHH
Q 008932 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSS------VELAAL----GPGTVMCDYLTYVFMFLSIATSNMVA 170 (548)
Q Consensus 102 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~-lG~------~~la~~----~~~~~i~~~~~~~~~gl~~a~~~~~s 170 (548)
++.+|+++++++|.+++++...+.+.+|+.++++ +++ ++.+.+ +.+.++..+...+..+++.+..|.++
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s 300 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDIS 300 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999988 322 112222 34555666666666889999999999
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 008932 171 TSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSAS 250 (548)
Q Consensus 171 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l 250 (548)
+++|++|+++.++..++.+.+...++++.++.+..+++++..++.+ +++ +..+++++++..++..+.....+.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~--~~~----~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 301 EAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYG--RPD----AGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCc----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998864 322 5788999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 008932 251 LGMKDSLGPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNK 310 (548)
Q Consensus 251 ~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~ 310 (548)
++.||++.+++.+++..++|++++++++..+.+|+.|+++++.+++.+..++..++.+|.
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888766778999999999999999998888877664
No 27
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.68 E-value=1.4e-13 Score=133.71 Aligned_cols=267 Identities=15% Similarity=0.091 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhHhhhhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHhhcChHHHHHHHH
Q 008932 109 VMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKNEVQHQIS 186 (548)
Q Consensus 109 ~~~~~p~~~~~~~~~~~~~v~~~~ig~-lG~~~la~~~~~~~i~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~~~~~ 186 (548)
.|.+.-....++...+.+++...++.| +|+++.|.++...++.+++..+. .|++.+....+++...+ +++.+.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 567778889999999999999999999 89999999999999988887764 88999998888877432 345555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 008932 187 VLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVA 266 (548)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 266 (548)
.......+.+++...... +...+.. ++. ...+........++.........++++.++.+.....++..
T Consensus 80 ~~~~~~~~~~~i~~~~~~-----~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILL-----IASFFGN---PSL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIIS 148 (273)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHcCC---chH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444443333322 2223322 222 12222222222257788889999999999999999999998
Q ss_pred HHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCChhHHHHHHHhhHHHHHHHHHHHHHH
Q 008932 267 SAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFY 346 (548)
Q Consensus 267 ~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~ 346 (548)
.+...++..+++.. +.++.+..++..++..+..++..++.+|+.+ .+....+++..+++++.+.|..+..+..++..
T Consensus 149 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 149 SLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887766555543 3458899999999999998888888776542 33334458999999999999999999999999
Q ss_pred HHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhh
Q 008932 347 SLIIYFATSM-GTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPE 391 (548)
Q Consensus 347 ~i~~~~~~~~-g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~ 391 (548)
..|.++++.+ |++++|.|+++.++......+..++.++..|.+++
T Consensus 226 ~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~ 271 (273)
T PF01943_consen 226 QIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSR 271 (273)
T ss_pred HhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997 99999999999999999999999999999999865
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.68 E-value=2.7e-13 Score=138.75 Aligned_cols=237 Identities=16% Similarity=0.031 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHhhhhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHhhcChHHH
Q 008932 103 SQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKNEV 181 (548)
Q Consensus 103 ~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~lG~~~la~~~~~~~i~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~ 181 (548)
++.|++.+...|+.++....++..++|+.+.+.+.+-..+.+..+..+.++...++ .++++..-|..|++..++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 46799999999999999999999999999999998888999999999999998666 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--CCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhH
Q 008932 182 QHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTG--PRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGP 259 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 259 (548)
++..++++.+.+++.+|.++.+..+++|+.+.++. ..+++....+...++...+++++..+..++...+.+++|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 99999999999999999999999999999988753 3466677888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCChhHHHHHHHhhHHHHHHH
Q 008932 260 LKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITM 339 (548)
Q Consensus 260 ~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~ 339 (548)
+++.+++.++|+.+++++. +.+|..|.+.++.++.++.+.++++..+|+..... ...+.... ..|..+-..++.
T Consensus 389 ~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~---~~~~~~~~-~~k~~l~~~i~~ 462 (518)
T COG0728 389 MKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP---GRGWGLFL-ILKLLLASAIMA 462 (518)
T ss_pred hHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---cchhhHHH-HHHHHHHHHHHH
Confidence 9999999999999997776 56788889999999999999999888877643221 33455555 667766666665
Q ss_pred HHHHHH
Q 008932 340 ISKVAF 345 (548)
Q Consensus 340 ~~~~~~ 345 (548)
...+..
T Consensus 463 ~~~~~~ 468 (518)
T COG0728 463 AALLAL 468 (518)
T ss_pred HHHHHH
Confidence 554443
No 29
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.64 E-value=3.1e-16 Score=139.83 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHH
Q 008932 334 PVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLI 413 (548)
Q Consensus 334 p~~~~~~~~~~~~~i~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~ 413 (548)
|.+++.+.+.+.+.++..+++++|+++++++++..++..+...+..+++.+..+.+++ ++|+ ||++++++..+.++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~-~~G~-~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQ-NIGA-GDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCS-SSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeec-cccc-cccccccccccccccc
Confidence 8899999999999999999999999999999999999999999999999999999965 8999 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHHH-HHHHH
Q 008932 414 GSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCF-LLGAL 492 (548)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~v~~~ 492 (548)
...++++.+++++.+++++..+|+.|+++.+.+.+++++..+..++...+.+..++++|.||++.++..++... +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888766 99998
Q ss_pred HHH
Q 008932 493 VLL 495 (548)
Q Consensus 493 ~~~ 495 (548)
+.|
T Consensus 159 l~y 161 (162)
T PF01554_consen 159 LAY 161 (162)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 30
>PRK15099 O-antigen translocase; Provisional
Probab=99.59 E-value=2.9e-13 Score=140.10 Aligned_cols=198 Identities=12% Similarity=-0.034 Sum_probs=171.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccChhHhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcChH
Q 008932 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIG-QGSSVELAALGPGTVMCDYL-TYVFMFLSIATSNMVATSLARQDKN 179 (548)
Q Consensus 102 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig-~lG~~~la~~~~~~~i~~~~-~~~~~gl~~a~~~~~s~~~g~~~~~ 179 (548)
++.+|+++++++|..++++...+.+.+|+.+++ ++|++++|.|+.+.++.+.. ..+..+++++..|.++++ +|++
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~ 287 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKR 287 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChH
Confidence 455699999999999999999999999999997 59999999999999998755 677799999999999995 5678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhH
Q 008932 180 EVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGP 259 (548)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 259 (548)
+.++.+++.......++++.+++.+++++++..++.+++ ++.+.+++++++++.++...+......+.+.++.+..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~----~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~ 363 (416)
T PRK15099 288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK----FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFY 363 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999888899999999997632 4557889999999988888877777777788888888
Q ss_pred HHHHHHHHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 008932 260 LKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLN 308 (548)
Q Consensus 260 ~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~ 308 (548)
....+...+++++++++++ +.+|..|+++++.+++.+..++......
T Consensus 364 ~~~~~~~~~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 364 ILAEVSQFTLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999888 5689999999999999999876654443
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=99.59 E-value=1.1e-12 Score=138.96 Aligned_cols=201 Identities=15% Similarity=0.036 Sum_probs=174.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhHhhhhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHhhcChH
Q 008932 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKN 179 (548)
Q Consensus 102 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~-lG~~~la~~~~~~~i~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~ 179 (548)
+++.|++++++.|.+.+++...+...+|+.++|+ +|++++|.|+.+.++.+...... ..++....|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 3567999999999999999999999999999999 79999999999999887765544 45677788888885 67888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhH
Q 008932 180 EVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGP 259 (548)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 259 (548)
+.++.+.+.+.+...+++++++.+..+++++..++.+++ +..+...++++++...+..+.......+++.||++..
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~----~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~ 356 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK----WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLS 356 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence 999999999999999999999999999999998887632 6778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 008932 260 LKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNK 310 (548)
Q Consensus 260 ~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~ 310 (548)
++.+++.++++++..+++. ..+|+.|+++++.+++.+...+.+++..|+
T Consensus 357 ~~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 357 FKWNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888877666555 457999999999999999888888877543
No 32
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.56 E-value=4.6e-12 Score=133.79 Aligned_cols=187 Identities=19% Similarity=0.152 Sum_probs=173.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHH
Q 008932 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNE 180 (548)
Q Consensus 102 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~-lG~~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~ 180 (548)
.+..|++++.++|..+..+...+.+.+|+.++++ +|++++|.|+.+..+......+...++....|.+++.+.++|.++
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~ 288 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKA 288 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 4567999999999999999999999999999999 799999999988899888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHH
Q 008932 181 VQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPL 260 (548)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 260 (548)
.++...+.+.....++++..+....+++++...+.+++ +..+...++++++..++..+.......+++.|+++..+
T Consensus 289 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~----~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 289 LKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK----YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 99999999999999999999999999999999887743 23378889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHhhhcCcchhhHHHHHHHH
Q 008932 261 KALAVASAINGIGDVALCSFLGYGIAGAAWATMVS 295 (548)
Q Consensus 261 ~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~ 295 (548)
+...++.++|.+++++++ +.+|+.|+++++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLI--PRFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HH
Confidence 999999999999999998 678999999999 44
No 33
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.50 E-value=7.7e-11 Score=112.97 Aligned_cols=245 Identities=12% Similarity=0.050 Sum_probs=177.9
Q ss_pred HHHHHHHHHhcc-cChhHhhhhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q 008932 124 LMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLL 201 (548)
Q Consensus 124 ~~~~v~~~~ig~-lG~~~la~~~~~~~i~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (548)
..+++-..+++| +|+++.|.++....+..+...+. .|+...... . .++++++.++..+.......+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888898 89999999999988887776653 555554443 2 3456666666666665554444444433
Q ss_pred HHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhHHHhhhc
Q 008932 202 FTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFL 281 (548)
Q Consensus 202 ~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~ 281 (548)
+.. .+..+++ +++ ...++....+..++..+....++.+++.+|.+......+...+...++..++.. .
T Consensus 77 ~~~----~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 144 (251)
T PF13440_consen 77 LAI----LIAYFFG---DPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-L 144 (251)
T ss_pred HHH----HHHHHhC---Chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 322 2223332 211 245566777788889999999999999999999999999988887444444443 3
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-cChHH
Q 008932 282 GYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFYSLIIYFATS-MGTNT 360 (548)
Q Consensus 282 ~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~~~~-~g~~~ 360 (548)
+.+..+..++..++..+..++.+...+++. +. +++.+. ++.+|.+.|..+.....+....++.++++. +|+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~ 218 (251)
T PF13440_consen 145 GLNLWSILLAFIISALLALLISFYLLRRKL----RL-SFKFSW-RRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEA 218 (251)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcccc----CC-CchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 348888899988888888776666443221 11 113333 348999999999999999999999999999 69999
Q ss_pred HHHHHHHHHHHHHHH-hchhhHHHhhHhhhhh
Q 008932 361 VAAHQVMIQTYGMCS-VWGEPLSQTAQSFMPE 391 (548)
Q Consensus 361 ~aa~~i~~~i~~l~~-~~~~~l~~a~~~~~~~ 391 (548)
+|.|+++.++...+. .+..++++...|.+++
T Consensus 219 ~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 219 VGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999887 9999999999998754
No 34
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=8.2e-07 Score=87.23 Aligned_cols=415 Identities=13% Similarity=0.039 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhcccChhHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHH
Q 008932 108 IVMFTGPATGLWLCGPLMSLID-TAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQIS 186 (548)
Q Consensus 108 i~~~~~p~~~~~~~~~~~~~v~-~~~ig~lG~~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~~~~ 186 (548)
-.+.+.-.+..+++..+.++.- +..+.+++++.+|..++=..+ +......++-=.........|..+.|.. ..+.
T Consensus 10 s~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~l---L~sTiLFlsREair~A~l~~gs~~~d~~-te~~ 85 (530)
T KOG2864|consen 10 SFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLEL---LQSTILFLSREAIRLAELRIGSEPADTW-TEFI 85 (530)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHH---HHHHHHHhhHHHHHHHhccCCCCCCccH-HHHH
Confidence 3444555566777777766664 445555899887766654443 3333333443333333334444332211 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCccc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 008932 187 VLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVH-LVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAV 265 (548)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 265 (548)
+..+++..++.+..+.+..+--.+.... |+- ..+.-..-..+...+...-.+...+.-..|..-+.+.-....-+
T Consensus 86 n~~wlS~~L~~~i~~~~i~~wl~~~~s~----d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e~l 161 (530)
T KOG2864|consen 86 NLLWLSVPLQTAINVACIYFWLGFLSSS----DEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAEGL 161 (530)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHhhcc----chhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHH
Confidence 3334444444444333322211222211 111 11111111222222222222233333333443344444444445
Q ss_pred HHHHHHHhhH-HHhhhcC-cchhhHHHHHHHHHHHHHHHHH-HHHhhccccc-----------ccc--cCCChh-HHHHH
Q 008932 266 ASAINGIGDV-ALCSFLG-YGIAGAAWATMVSQVVSAYMMI-QSLNNKGYNA-----------FSF--SVPSTN-ELATI 328 (548)
Q Consensus 266 ~~~~~i~l~~-~li~~~~-~Gi~Gaa~a~~i~~~~~~~~~~-~~~~~~~~~~-----------~~~--~~~~~~-~~~~~ 328 (548)
..++.-+..+ .++..++ .++.--|+|.........+..+ .|++.++-.+ .+. .+++.. .=++.
T Consensus 162 ~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd~d~ 241 (530)
T KOG2864|consen 162 ATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFDNDL 241 (530)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccccccHHH
Confidence 5555422222 2222222 3444444554444433333222 2333332000 000 011111 22567
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHH-HhchhhHHHhhHhhhhhhhhccCCCHHHHH
Q 008932 329 LGLAGPVFITMISKVAFYSLIIYFATSM---GTNTVAAHQVMIQTYGMC-SVWGEPLSQTAQSFMPELIYGVNRSLVKAR 404 (548)
Q Consensus 329 l~~~~p~~~~~~~~~~~~~i~~~~~~~~---g~~~~aa~~i~~~i~~l~-~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~ 404 (548)
+|.-....-..+..++..+-+.++++.. .-.+=|.|.++++.-++. -.+..++-.....+.++ .... ++.|+.|
T Consensus 242 ~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~-~ls~-~~qe~~k 319 (530)
T KOG2864|consen 242 LKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFAR-LLSR-DNQENVK 319 (530)
T ss_pred HHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHH-Hhhc-cchhhHH
Confidence 7777788888899999999888777743 334556788888887776 56777787777777755 4344 4455544
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHH-
Q 008932 405 M---LLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFS- 480 (548)
Q Consensus 405 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~- 480 (548)
+ ...+.++....+++...+.....+++...++....-.-......++++++.+++.+++.+..+...+.++.+-.-
T Consensus 320 ~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~ 399 (530)
T KOG2864|consen 320 KAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDK 399 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHh
Confidence 4 556677777777777776666666666666543322222345789999999999999999999999977766554
Q ss_pred --HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 008932 481 --ISMSGCFLLGALVLLFASRGYGLPGCWFALVCFQSARFLLSLWRLLSPDGTL 532 (548)
Q Consensus 481 --~~~~~~~~v~~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~l~~~~~~~ 532 (548)
..+....++.+...+++..++|..|..+|..+-+.+|.+...+.+++.++..
T Consensus 400 ~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~ 453 (530)
T KOG2864|consen 400 HNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRHYYRDL 453 (530)
T ss_pred cccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445556677778889999999999999999999999998887777766654
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.07 E-value=8.1e-08 Score=100.80 Aligned_cols=205 Identities=15% Similarity=0.111 Sum_probs=153.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--c-ChHHHHHHHHHHHHHHHH-HhchhhHHHhhHhhhhhhhhccCC---
Q 008932 326 ATILGLAGPVFITMISKVAFYSLIIYFATS--M-GTNTVAAHQVMIQTYGMC-SVWGEPLSQTAQSFMPELIYGVNR--- 398 (548)
Q Consensus 326 ~~~l~~~~p~~~~~~~~~~~~~i~~~~~~~--~-g~~~~aa~~i~~~i~~l~-~~~~~~l~~a~~~~~~~~~~ga~~--- 398 (548)
++.+++.......++...+..+-+.++++. + ..++-+.|++++|.-++. -.+..++-.+.....++ ....++
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk-~l~~~~~~~ 331 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK-LLSRDNSKK 331 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH-HhcccCchh
Confidence 789999999999999999999999988888 5 678889999999998887 46667787777777755 333211
Q ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhcc
Q 008932 399 -----SLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAG 473 (548)
Q Consensus 399 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~ 473 (548)
+.+++.+.....+++...+++.+.+......+.+..++.++.-.......+++.++..+++.+++++...++++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 134566677777777777777777666666666666654332222235778899999999999999999999986
Q ss_pred CCchhH---HHHHHHHHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 008932 474 RDVKFF---SISMSGCFLLGALVLLFASR-GYGLPGCWFALVCFQSARFLLSLWRLLSPDGT 531 (548)
Q Consensus 474 g~~~~~---~~~~~~~~~v~~~~~~~~~~-~~G~~G~~~a~~~~~~~~~~~~~~~l~~~~~~ 531 (548)
.+.+-. ...+....++.+...+.+.. .+|..|+.+|.++.+.+|.+.+.+.+++....
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~~ 473 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSLRIIYSLRFIRRYFRN 473 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555533 33444555566666677777 59999999999999999999988887764443
No 36
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.02 E-value=1.9e-08 Score=104.08 Aligned_cols=203 Identities=14% Similarity=0.097 Sum_probs=180.3
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HhchhhHHHhhHhhhhhhhhccCCCH
Q 008932 322 TNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMC-SVWGEPLSQTAQSFMPELIYGVNRSL 400 (548)
Q Consensus 322 ~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~~~~~g~~~~aa~~i~~~i~~l~-~~~~~~l~~a~~~~~~~~~~ga~~~~ 400 (548)
..+.|++.+++.|..+..........+...+++++|+.++++.+++.+..+.. +.+..+++.+..+..++ ++|+ +++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQ-a~ga-~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQ-AFGA-KKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHh-hhcc-ccc
Confidence 57889999999999999999999999999999999999999999999888875 77888899999999965 9999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHH
Q 008932 401 VKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFS 480 (548)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~ 480 (548)
+....+..++..+.....++.+... .+.+++...+..|+++...+..+.+......+.+.....+...+++.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 9999999999888888888887755 455888899999999999899988888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH--HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHc
Q 008932 481 ISMSGCFLLGALVLL--FASRGYGLPGCWFALVCFQSARFLLSLWRLLS 527 (548)
Q Consensus 481 ~~~~~~~~v~~~~~~--~~~~~~G~~G~~~a~~~~~~~~~~~~~~~l~~ 527 (548)
+.......+++++.+ ....++|..|..++..++++........+..-
T Consensus 181 ~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~ 229 (473)
T KOG1347|consen 181 VIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVL 229 (473)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhee
Confidence 999999999999887 55677889999999999999998876665543
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.92 E-value=3.1e-06 Score=79.79 Aligned_cols=258 Identities=11% Similarity=0.034 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--h-hHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHH
Q 008932 105 MKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGS--S-VELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEV 181 (548)
Q Consensus 105 ~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~lG--~-~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~ 181 (548)
..++.++-+|..++.+...+...+.+.-+++-. + +.+|+++++..+.-++..+...+-.....++ ++++++.
T Consensus 10 y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V-----~s~rsrr 84 (345)
T PF07260_consen 10 YWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFV-----NSKRSRR 84 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHh-----cchhhhH
Confidence 368999999999999999999988888888733 2 4599999999998887777665555444433 3333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHH-HhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhH
Q 008932 182 QHQISVLLFVGLACGFLMLLF-TRFFGSWAL-TAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGP 259 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~-~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 259 (548)
+........+........++ .-.++..++ +.++. ++++.+.+...+.++.+.-++.++....+|++.-++++...
T Consensus 85 -~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgV--s~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 85 -KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGV--SPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 22222222222222222222 223445555 44444 77999999999999999999999999999999877777666
Q ss_pred HHHHHHHHHHHHHhhHHHhhhc-C--cchhhHHHHHHHHHHHHH--HHHHHHHhhcccccc--cccCCChhHHHHHHHhh
Q 008932 260 LKALAVASAINGIGDVALCSFL-G--YGIAGAAWATMVSQVVSA--YMMIQSLNNKGYNAF--SFSVPSTNELATILGLA 332 (548)
Q Consensus 260 ~~~~~~~~~~~i~l~~~li~~~-~--~Gi~Gaa~a~~i~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~ 332 (548)
...++...+..+++..+++... + -+..--..+...+..+.+ +.+-++..-+...+. ...+.+...+++++++.
T Consensus 162 ~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~ 241 (345)
T PF07260_consen 162 GSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFW 241 (345)
T ss_pred ehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHH
Confidence 6666665555555444444211 1 111111233333333322 222222111111221 22345667899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-c-Ch----HHHHHHHHHHHH
Q 008932 333 GPVFITMISKVAFYSLIIYFATS-M-GT----NTVAAHQVMIQT 370 (548)
Q Consensus 333 ~p~~~~~~~~~~~~~i~~~~~~~-~-g~----~~~aa~~i~~~i 370 (548)
+|.+.........-.+...++++ + |+ +++|..++.+..
T Consensus 242 ~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypv 285 (345)
T PF07260_consen 242 WPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPV 285 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCC
Confidence 99999999999999999999998 4 33 455555444443
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.60 E-value=5.1e-06 Score=72.32 Aligned_cols=80 Identities=25% Similarity=0.196 Sum_probs=74.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 008932 230 VQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNN 309 (548)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~ 309 (548)
+++.+++.++..+....+..+++.||++..++..+++.++|++++++++ +.+|..|+++|+.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999999997 78999999999999999999998888887
Q ss_pred cc
Q 008932 310 KG 311 (548)
Q Consensus 310 ~~ 311 (548)
+-
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 63
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.24 E-value=0.00014 Score=76.63 Aligned_cols=202 Identities=13% Similarity=0.120 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--c-ChhHhhhhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCh---
Q 008932 106 KEIVMFTGPATGLWLCGPLMSLIDTAVIGQ--G-SSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDK--- 178 (548)
Q Consensus 106 ~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~--l-G~~~la~~~~~~~i~~~~~~~~-~gl~~a~~~~~s~~~g~~~~--- 178 (548)
+++++++.....+.++-.+.+--|.+++.. + ..++.|.|+++.+.-.++.-+. ..+--+.-...++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 678999999999999999999999999998 4 6788999999998888875444 56777777777777654322
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Q 008932 179 ------NEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLG 252 (548)
Q Consensus 179 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ 252 (548)
++..+.+...+.+...+++++..+....++.++.++++++ =....+...+++.|..+|+.+++.+.-++.++
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~--w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s 410 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSR--WSSTSAPSLLRAYCYYIPFLAINGITEAFVFS 410 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhc--ccCCCchHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 4466677888888888998888888888888999987643 22233578899999999999999999999999
Q ss_pred CCCChhHH---HHHHHHHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 008932 253 MKDSLGPL---KALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNK 310 (548)
Q Consensus 253 ~g~~~~~~---~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~ 310 (548)
....+... ....+..++.+..+++|+.. ++|..|..+|+++...+..+...+++++.
T Consensus 411 ~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 411 VASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776654 34455667777788888866 79999999999999999999988888764
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.07 E-value=0.0012 Score=63.61 Aligned_cols=189 Identities=20% Similarity=0.199 Sum_probs=112.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHhc-hhhHHHhhHhhhhhhhhccCCCHHHHHHH
Q 008932 329 LGLAGPVFITMISKVAFYSLIIYFATS-MGTNTVAAHQVMIQTYGMCSVW-GEPLSQTAQSFMPELIYGVNRSLVKARML 406 (548)
Q Consensus 329 l~~~~p~~~~~~~~~~~~~i~~~~~~~-~g~~~~aa~~i~~~i~~l~~~~-~~~l~~a~~~~~~~~~~ga~~~~~~~~~~ 406 (548)
+|-................+...+.++ +|+++.+.++....+..+...+ ..|+.++..-..++ . . ++.++.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~-~--~-~~~~~~~~~ 77 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAE-Y--K-DKKELRSAY 77 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-h--h-hhHHHHHHH
Confidence 344555566666666666666655555 5999999999999998887554 77788777655533 1 1 222334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHH
Q 008932 407 LKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGC 486 (548)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 486 (548)
.........+..+....+..+.. .+. +++... ..........++..........+++.++.+.........
T Consensus 78 ~~~~~~~~~~~~~i~~~~~~~~~-----~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (273)
T PF01943_consen 78 FSSVLFLLLIFSLIFLLILLIAS-----FFG-NPSLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIIS 148 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HcC-CchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333333222222222222 233 332211 111111112245667778888999998888887777776
Q ss_pred HHHHHHHHH-HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHcCCC
Q 008932 487 FLLGALVLL-FASRGYGLPGCWFALVCFQSARFLLSLWRLLSPDG 530 (548)
Q Consensus 487 ~~v~~~~~~-~~~~~~G~~G~~~a~~~~~~~~~~~~~~~l~~~~~ 530 (548)
.++...+.+ ....+.++.+..++..++.++..+...+..+++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
T PF01943_consen 149 SLLSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRRKLR 193 (273)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666665544 33333448899999999999888887777775443
No 41
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.04 E-value=3e-05 Score=67.44 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHcCC
Q 008932 450 LIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLLFASRGYGLPGCWFALVCFQSARFLLSLWRLLSPD 529 (548)
Q Consensus 450 l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~l~~~~ 529 (548)
++++++..++.+.+......+++.||+|.....+..+.++++++++.+.+++|..|+.++..+++.+......+..+|+.
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~~ 81 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYVRKKI 81 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred Ccc
Q 008932 530 GTL 532 (548)
Q Consensus 530 ~~~ 532 (548)
+..
T Consensus 82 ~~~ 84 (146)
T PF14667_consen 82 GIK 84 (146)
T ss_pred CCC
Confidence 655
No 42
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.0029 Score=62.96 Aligned_cols=201 Identities=14% Similarity=0.134 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cChhHhhhhcchhHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCh---
Q 008932 106 KEIVMFTGPATGLWLCGPLMSLIDTAVIGQ---GSSVELAALGPGTVMCDYLTY-VFMFLSIATSNMVATSLARQDK--- 178 (548)
Q Consensus 106 ~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~---lG~~~la~~~~~~~i~~~~~~-~~~gl~~a~~~~~s~~~g~~~~--- 178 (548)
++..+.......+.++-.+.+--|.+++.- +.-.+.|.|.+..+.-.++.- ++..+--......+|...+++.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 566777777788888888888888888884 344455666666555555533 3345666666666666655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChh
Q 008932 179 NEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLG 258 (548)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 258 (548)
+++..++...+.+...+++..+.+....++.++.+++|++ =....+...+++.|..+|+.+++.+.-+++.+.+..+.
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~k--wss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSK--WSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCcc--ccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 4445566667777778887777777777888889988753 22223458899999999999999999999999887776
Q ss_pred HH---HHHHHHHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 008932 259 PL---KALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNK 310 (548)
Q Consensus 259 ~~---~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~ 310 (548)
.- +...+..++..+++++++-. +|..|..+|.++...+.-+...+++++.
T Consensus 397 i~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 397 IDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 45667778888899999955 5679999999999888887777777654
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.86 E-value=0.0046 Score=58.80 Aligned_cols=163 Identities=21% Similarity=0.271 Sum_probs=104.4
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHhc-hhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008932 349 IIYFATSMGTNTVAAHQVMIQTYGMCSVW-GEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGAS 427 (548)
Q Consensus 349 ~~~~~~~~g~~~~aa~~i~~~i~~l~~~~-~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (548)
...++..+|+++.+.|+....+..+...+ ..++.+... . . .. ++.++.++..........+.++...++...
T Consensus 8 ~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~-~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PF13440_consen 8 LILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLV----R-S-AA-RDKQDIRSLLRFSLLVSLLLAVILAILAIL 80 (251)
T ss_pred HHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-h-hc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556999999999999988887654 455544432 2 1 22 667777777777766555555444443332
Q ss_pred hhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHHHHHHHHHH-HHHHhcCCchhH
Q 008932 428 VPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVL-LFASRGYGLPGC 506 (548)
Q Consensus 428 ~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~~~~-~~~~~~~G~~G~ 506 (548)
... .+ .+++ ....+....+..++...+......+++.+|.+...........+.+... .....+.++.++
T Consensus 81 ~~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (251)
T PF13440_consen 81 IAY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLWSI 151 (251)
T ss_pred HHH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 222 23 3443 2333445556667778888899999999999988877776666553332 233333488888
Q ss_pred HHHHHHHHHHHHHHHHHHHHc
Q 008932 507 WFALVCFQSARFLLSLWRLLS 527 (548)
Q Consensus 507 ~~a~~~~~~~~~~~~~~~l~~ 527 (548)
.++..++.++..+......++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~ 172 (251)
T PF13440_consen 152 LLAFIISALLALLISFYLLRR 172 (251)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 999888888887766554443
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.62 E-value=0.021 Score=54.59 Aligned_cols=160 Identities=12% Similarity=0.056 Sum_probs=110.2
Q ss_pred CChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhcc
Q 008932 320 PSTNELATILGLAGPVFITMISKVAFYSLIIYFATSM---GTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGV 396 (548)
Q Consensus 320 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~~~~~---g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga 396 (548)
+.....+++.++-+|..++..+..+.-.+.+.-+++- ..+.+|+|+++..+.-++..+...+-+....++ .
T Consensus 5 ~~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V------~ 78 (345)
T PF07260_consen 5 PSLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFV------N 78 (345)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHh------c
Confidence 4556788999999999999999999988887666653 236699999999999888887777776665444 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhhhhc-ccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 008932 397 NRSLVKARMLLKSLLLIGSTLGLVLGTI-----GASVPWFFP-NIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTL 470 (548)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~-~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l 470 (548)
++.+ |+.....+ .+.++..+++ ..-+++.+. .+|.-|+++.+.+...+.++.+.-+++++....+|++
T Consensus 79 -s~rs--rr~~vl~~---~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGIL 152 (345)
T PF07260_consen 79 -SKRS--RRKAVLCM---AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGIL 152 (345)
T ss_pred -chhh--hHHHHHHH---HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 3222 22222222 2222222222 222333333 6778899999999999999999999999999999988
Q ss_pred hccCCchhHHHHHHHHHHHHH
Q 008932 471 LAGRDVKFFSISMSGCFLLGA 491 (548)
Q Consensus 471 ~~~g~~~~~~~~~~~~~~v~~ 491 (548)
--.+++..+...++...+.-+
T Consensus 153 ik~r~s~iV~~aSI~~v~~qv 173 (345)
T PF07260_consen 153 IKHRHSWIVGSASIADVIAQV 173 (345)
T ss_pred hhccceeEeehHHHHHHHHHH
Confidence 866666666655555444433
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=96.66 E-value=0.76 Score=45.16 Aligned_cols=334 Identities=8% Similarity=-0.019 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHH
Q 008932 159 MFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWP 238 (548)
Q Consensus 159 ~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 238 (548)
.|+....+..+|...=+|+.+++..-+.-.+.+....+..+..+ .-...+ ++ ...|=...+....
T Consensus 78 gg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~--------vf~~~~--~~-----si~yk~l~~~~FV 142 (467)
T COG4267 78 GGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI--------VFFVNN--QY-----SIVYKILACALFV 142 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH--------hhhhcC--ch-----hHHHHHHHHHHHH
Confidence 56667777777777667777766555554444444444333321 111111 11 1222223344555
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 008932 239 AVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFS 318 (548)
Q Consensus 239 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~ 318 (548)
..+.......++.+.++.+...+.-.++.++...+..++- .+++.|.-++..++..+...+...++.|.-.-+ +
T Consensus 143 ~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~-~-- 216 (467)
T COG4267 143 GMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKSS-R-- 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc-c--
Confidence 6677778888999999999999999999988888777665 458999999999999998887777775532111 1
Q ss_pred CCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCh-----------HHHHHHHHHHHHHHHHHhchhhHHHhh
Q 008932 319 VPSTNELATILGLAGPVFITMISKVAFYSLIIYFATS--MGT-----------NTVAAHQVMIQTYGMCSVWGEPLSQTA 385 (548)
Q Consensus 319 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~~~~--~g~-----------~~~aa~~i~~~i~~l~~~~~~~l~~a~ 385 (548)
+..++-+. ..+--....+......+.-.++.++.=. .|. -++..+-....+.--+..+...+-+..
T Consensus 217 ~i~FdFL~-~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~lET~F 295 (467)
T COG4267 217 RIGFDFLL-YRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISLETDF 295 (467)
T ss_pred ccceehhh-hhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeeeeehH
Confidence 11111111 1111122233333333333344332111 111 122222111111111122222233333
Q ss_pred Hhhhhhh---hhcc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHH
Q 008932 386 QSFMPEL---IYGV------NRSLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILA 456 (548)
Q Consensus 386 ~~~~~~~---~~ga------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~ 456 (548)
++..-+. .-|- +++.++.....++.+.-.+-+-...++.++++++.+...|.-++.. .++. -.-
T Consensus 296 ~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~----l~lF---~vd 368 (467)
T COG4267 296 QENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYY----LDLF---YVD 368 (467)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHH---HHH
Confidence 3222110 0011 1334444445555555556666677788888888888777655432 2222 222
Q ss_pred HHhhhhhHhhhhhhhc---cCCchhHHHHHHHHHHHHHHHHHH---HHhcCCchhHHHHHHHHHHHHHHHH
Q 008932 457 IVVSPSTHSLEGTLLA---GRDVKFFSISMSGCFLLGALVLLF---ASRGYGLPGCWFALVCFQSARFLLS 521 (548)
Q Consensus 457 ~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~~~~v~~~~~~~---~~~~~G~~G~~~a~~~~~~~~~~~~ 521 (548)
.+...+|.+..+.+.. ..+.+.....+......|..+.++ +.+.|-..|..+|..+...+++...
T Consensus 369 ~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~~~~l 439 (467)
T COG4267 369 VLGVSCQIVFMSLLNIFLYFDYRRIALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLVAFKSL 439 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHHHHhhh
Confidence 2233334444444333 344444554555555556655553 3455656777777776666665543
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=67.60 E-value=1.4e+02 Score=29.99 Aligned_cols=136 Identities=15% Similarity=0.066 Sum_probs=83.1
Q ss_pred hchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHH
Q 008932 376 VWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYIL 455 (548)
Q Consensus 376 ~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l 455 (548)
.++.+++....=.++. .+=+ ++.++......-+..++...+..++.+++.. .++... ..+.+ ...
T Consensus 75 IiTgg~q~iiTRfiSD-~lF~-k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~--------~~~~si---~yk~l--~~~ 139 (467)
T COG4267 75 IITGGFQLIITRFISD-CLFE-KKQRKILPSYIGVILLVTLVAGVIGLIVFFV--------NNQYSI---VYKIL--ACA 139 (467)
T ss_pred HHhhhHHHHHHHHHHH-HHHH-HHHHHHhHhHHHHHHHHHHHHHHHHHHhhhh--------cCchhH---HHHHH--HHH
Confidence 3444555555444544 3334 6777777777666666666555555322211 122222 23333 122
Q ss_pred HHHhhhhhHhhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHc
Q 008932 456 AIVVSPSTHSLEGTLLAGRDVKFFSISMSGCFLLGALVLLFASRGYGLPGCWFALVCFQSARFLLSLWRLLS 527 (548)
Q Consensus 456 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~l~~ 527 (548)
.....+...+..-.+.+.+|-|...+...+++.+.+.+...+ .+.++.|..++..++..+..........|
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~-~~~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLF-LKSPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 233334455666677788999999999999999988877644 34689999999998888877665544433
No 47
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=59.60 E-value=38 Score=25.80 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=24.1
Q ss_pred hhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008932 391 ELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGA 426 (548)
Q Consensus 391 ~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (548)
+..+.+ ||++++++..+++.+++. +++.++++++
T Consensus 45 ~~~~~~-Gd~~~A~~aS~~Ak~~~~-ia~~~g~~~~ 78 (82)
T PF04505_consen 45 RSRYAA-GDYEGARRASRKAKKWSI-IAIIIGIVII 78 (82)
T ss_pred HHHHHC-CCHHHHHHHHHHhHHHHH-HHHHHHHHHH
Confidence 445666 999999999999988774 4444444443
No 48
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=51.76 E-value=1.6e+02 Score=25.55 Aligned_cols=28 Identities=43% Similarity=0.599 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008932 399 SLVKARMLLKSLLLIGSTLGLVLGTIGA 426 (548)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (548)
+.++-++..++...+++.++++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 9 RPEEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777766655
No 49
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=28.86 E-value=6.3e+02 Score=25.65 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=31.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Q 008932 177 DKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAF 214 (548)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 214 (548)
+.++.+++++++...+........++.....-|+...-
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~ 126 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQV 126 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778999999999999999888888887777877643
No 50
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.88 E-value=1.1e+02 Score=25.35 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhc
Q 008932 285 IAGAAWATMVSQVVSAYMMIQSLNNK 310 (548)
Q Consensus 285 i~Gaa~a~~i~~~~~~~~~~~~~~~~ 310 (548)
+.|+.++.+.+-+...++..|+++|+
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544444445555544
No 51
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=24.23 E-value=3.2e+02 Score=20.73 Aligned_cols=36 Identities=14% Similarity=0.020 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHH
Q 008932 161 LSIATSNMVATSLARQDKNEVQHQISVLLFVGLACG 196 (548)
Q Consensus 161 l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (548)
++.-.+..+-..+.++|++++++.-+++-.++.+-.
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~ 71 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAI 71 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHH
Confidence 344445566777778999999988888766654433
No 52
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=23.86 E-value=7.4e+02 Score=24.73 Aligned_cols=45 Identities=18% Similarity=0.082 Sum_probs=27.3
Q ss_pred ChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 008932 321 STNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYG 372 (548)
Q Consensus 321 ~~~~~~~~l~~~~p~~~~~~~~~~~~~i~~~~~~~~g~~~~aa~~i~~~i~~ 372 (548)
.+...++.+|.++|.++..+-.. +...-.+++. -+.|++.+|+-.
T Consensus 85 i~~~~~~~lk~~vPa~iYalqNn----l~yval~~ld---aatyqVt~qlKI 129 (345)
T KOG2234|consen 85 ILAAPRETLKVSVPALIYALQNN----LQYVALSNLD---AATYQVTYQLKI 129 (345)
T ss_pred HHhChHHHHHHHHHHHHHHHhhh----HHHHHHhcCC---chhhhhhhhHHH
Confidence 44556799999999998766553 2223333333 345666665543
Done!