Query 008932
Match_columns 548
No_of_seqs 304 out of 2441
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 15:00:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.6E-46 5.4E-51 392.7 32.3 426 102-532 8-450 (460)
2 3mkt_A Multi antimicrobial ext 99.8 3.5E-19 1.2E-23 185.4 20.6 206 103-310 235-446 (460)
3 2k1k_A Ephrin type-A receptor 37.7 42 0.0015 20.4 3.6 24 285-308 13-36 (38)
4 2ks1_B Epidermal growth factor 25.7 1.3E+02 0.0044 19.0 4.4 13 299-311 27-39 (44)
5 2l2t_A Receptor tyrosine-prote 23.5 1.4E+02 0.0049 18.8 4.3 10 302-311 29-38 (44)
6 2jwa_A Receptor tyrosine-prote 19.9 1.7E+02 0.0058 18.4 4.1 11 301-311 29-39 (44)
7 4hkr_A Calcium release-activat 14.8 5.8E+02 0.02 22.1 13.0 83 357-441 56-145 (214)
8 4ev6_A Magnesium transport pro 14.0 2.4E+02 0.0084 26.6 5.8 26 504-530 313-338 (339)
9 1pw4_A Glycerol-3-phosphate tr 12.8 8.5E+02 0.029 22.9 29.0 27 497-523 406-432 (451)
10 4aps_A DI-OR tripeptide H+ sym 10.8 1E+03 0.035 22.8 26.3 21 500-520 447-467 (491)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.6e-46 Score=392.73 Aligned_cols=426 Identities=15% Similarity=0.149 Sum_probs=391.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHH
Q 008932 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEV 181 (548)
Q Consensus 102 ~~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~lG~~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~ 181 (548)
+++.|++++.++|.++++++..+++.+|+.+++++|++++|+++++.++..+...+..|++.+..+.++|++|++|+++.
T Consensus 8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~ 87 (460)
T 3mkt_A 8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKI 87 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence 45569999999999999999999999999999999999999999999998888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHH
Q 008932 182 QHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLK 261 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 261 (548)
++.+++++.+.++++++.+++ +.+.++++.+++. |++..+.+..|+++++++.++..+....++++|+.|+++.+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (460)
T 3mkt_A 88 PFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDV--EEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV 164 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSS--TTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999999998776 6788899888865 6788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHhhh----cCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc-c----cccCCChhHHHHHHHhh
Q 008932 262 ALAVASAINGIGDVALCSF----LGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNA-F----SFSVPSTNELATILGLA 332 (548)
Q Consensus 262 ~~~~~~~~~i~l~~~li~~----~~~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~l~~~ 332 (548)
.++++.++|++++++++.. +++|+.|+++|+.+++.+..++.++++++++... . +..+++++.+|+++++|
T Consensus 165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (460)
T 3mkt_A 165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG 244 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence 9999999999999999965 3799999999999999999998888776654221 1 12356788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhhhhccCCCHHHHHHHHHHHHH
Q 008932 333 GPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLL 412 (548)
Q Consensus 333 ~p~~~~~~~~~~~~~i~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~~~ga~~~~~~~~~~~~~~~~ 412 (548)
+|.+++.+.+++.+.+++.+++++|++++++|+++.++.++...+..+++++..|.+++ ++|+ ||++++|+..+++.+
T Consensus 245 ~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~-~~g~-~~~~~~~~~~~~~~~ 322 (460)
T 3mkt_A 245 FPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGH-KLGE-QDTKGAAIAANVGLM 322 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHS-SCCCTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999965 8898 999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhhccCCchhHHHHHHHHH-HHHH
Q 008932 413 IGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLAGRDVKFFSISMSGCF-LLGA 491 (548)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~v~~ 491 (548)
++..++++.+++++++++++..+|++|+++.+.+..+++++.+..++++++.+..+++++.||+|.++..++.+. ++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 402 (460)
T 3mkt_A 323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL 402 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888999999999999999999999999999999999999988765 8999
Q ss_pred HHHHHHHhc-------CCchhHHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 008932 492 LVLLFASRG-------YGLPGCWFALVCFQSARFLLSLWRLLSPDGTL 532 (548)
Q Consensus 492 ~~~~~~~~~-------~G~~G~~~a~~~~~~~~~~~~~~~l~~~~~~~ 532 (548)
++.+.+.+. +|+.|+|+|+.+++++..++..++++++.+..
T Consensus 403 ~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 450 (460)
T 3mkt_A 403 PTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQS 450 (460)
T ss_dssp HHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCCST
T ss_pred HHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999877776 99999999999999999998888877766554
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.82 E-value=3.5e-19 Score=185.39 Aligned_cols=206 Identities=17% Similarity=0.104 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHH
Q 008932 103 SQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQ 182 (548)
Q Consensus 103 ~~~~~i~~~~~p~~~~~~~~~~~~~v~~~~ig~lG~~~la~~~~~~~i~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~ 182 (548)
+..|+++++++|.+++.+...+...+|+.+++++|++++|+++++.++.++...+..+++.+..|.+++++|++|+++.+
T Consensus 235 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~ 314 (460)
T 3mkt_A 235 KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAA 314 (460)
T ss_dssp SSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCCcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCChhHHHH
Q 008932 183 HQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKA 262 (548)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 262 (548)
+..++++.+...++++.+++++++++++..++.+ |+++.+.+..++++.+++.++.+++.+..+++++.||++.+++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 315 IAANVGLMTGLATACITALLTVLFREQIALLYTE--NQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999999999999999999999865 67889999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHhhHHHhhh----cC-cchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 008932 263 LAVAS-AINGIGDVALCSF----LG-YGIAGAAWATMVSQVVSAYMMIQSLNNK 310 (548)
Q Consensus 263 ~~~~~-~~~i~l~~~li~~----~~-~Gi~Gaa~a~~i~~~~~~~~~~~~~~~~ 310 (548)
.+++. ++++++++++... ++ +|+.|+++|+.+++.+..++..+.++|+
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 9999999999876 66 9999999999999999988877666554
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=37.71 E-value=42 Score=20.42 Aligned_cols=24 Identities=4% Similarity=0.140 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 008932 285 IAGAAWATMVSQVVSAYMMIQSLN 308 (548)
Q Consensus 285 i~Gaa~a~~i~~~~~~~~~~~~~~ 308 (548)
+.|+.++.+++-.+...+.+++++
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeeeehHHHHHHHHHHHHHHHHee
Confidence 445555555554444444444433
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=25.73 E-value=1.3e+02 Score=18.98 Aligned_cols=13 Identities=8% Similarity=-0.095 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhcc
Q 008932 299 SAYMMIQSLNNKG 311 (548)
Q Consensus 299 ~~~~~~~~~~~~~ 311 (548)
..+..+++++|++
T Consensus 27 i~~~~~~~~RRr~ 39 (44)
T 2ks1_B 27 VALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhH
Confidence 3344445555543
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=23.55 E-value=1.4e+02 Score=18.76 Aligned_cols=10 Identities=10% Similarity=0.096 Sum_probs=4.4
Q ss_pred HHHHHHhhcc
Q 008932 302 MMIQSLNNKG 311 (548)
Q Consensus 302 ~~~~~~~~~~ 311 (548)
..+++++|++
T Consensus 29 ~~~~~~RRRr 38 (44)
T 2l2t_A 29 TFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHhhhhh
Confidence 3344445543
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=19.94 E-value=1.7e+02 Score=18.43 Aligned_cols=11 Identities=0% Similarity=-0.022 Sum_probs=5.1
Q ss_pred HHHHHHHhhcc
Q 008932 301 YMMIQSLNNKG 311 (548)
Q Consensus 301 ~~~~~~~~~~~ 311 (548)
+....|++|++
T Consensus 29 l~~~~~~RRR~ 39 (44)
T 2jwa_A 29 VVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHhheehhh
Confidence 33344555543
No 7
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=14.80 E-value=5.8e+02 Score=22.06 Aligned_cols=83 Identities=7% Similarity=0.097 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhchhhHHHhhHhhhhhh-------hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008932 357 GTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPEL-------IYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGASVP 429 (548)
Q Consensus 357 g~~~~aa~~i~~~i~~l~~~~~~~l~~a~~~~~~~~-------~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (548)
++.-+.+|++...+...+..+..-+++-..|.+-.. .... .-.++.+.+...+-.++..+|+++.+.-....
T Consensus 56 p~~LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~e-sPH~r~~~yIE~AW~fST~lGi~LFL~evall 134 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHE-SPHERLHWYIETAWAFSTLLGLILFLLEIAIL 134 (214)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445577888887776666666666666666666321 0111 34567777777777777666666655443333
Q ss_pred hhhcccccCCHH
Q 008932 430 WFFPNIFTSDKS 441 (548)
Q Consensus 430 ~~i~~lf~~d~~ 441 (548)
-+ ++++..+..
T Consensus 135 ~W-VKF~~~~~~ 145 (214)
T 4hkr_A 135 CW-VKFYDLSRR 145 (214)
T ss_dssp HH-HHHTTTCHH
T ss_pred he-EEeecCCcH
Confidence 33 366654443
No 8
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=14.03 E-value=2.4e+02 Score=26.57 Aligned_cols=26 Identities=8% Similarity=0.289 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCC
Q 008932 504 PGCWFALVCFQSARFLLSLWRLLSPDG 530 (548)
Q Consensus 504 ~G~~~a~~~~~~~~~~~~~~~l~~~~~ 530 (548)
.|.|+.+++ +++.++..+++++|++|
T Consensus 313 ~gy~~~l~~-m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 313 QGFWLVMAL-MVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp THHHHHHHH-HHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 455555544 44555556677888777
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=12.76 E-value=8.5e+02 Score=22.95 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=15.5
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHH
Q 008932 497 ASRGYGLPGCWFALVCFQSARFLLSLW 523 (548)
Q Consensus 497 ~~~~~G~~G~~~a~~~~~~~~~~~~~~ 523 (548)
....+|....++...+..++..++...
T Consensus 406 l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 406 TVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 345567777666666555555554433
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=10.79 E-value=1e+03 Score=22.78 Aligned_cols=21 Identities=0% Similarity=-0.293 Sum_probs=9.4
Q ss_pred cCCchhHHHHHHHHHHHHHHH
Q 008932 500 GYGLPGCWFALVCFQSARFLL 520 (548)
Q Consensus 500 ~~G~~G~~~a~~~~~~~~~~~ 520 (548)
..+....+.......++..+.
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~ 467 (491)
T 4aps_A 447 AKSEVAYFSYFGLGSVVLGIV 467 (491)
T ss_dssp GSSTTHHHHHTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 345444554444444444333
Done!