Query 008932
Match_columns 548
No_of_seqs 304 out of 2441
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 15:00:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008932.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008932hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 22.6 2.3E+02 0.017 24.6 17.4 26 282-307 406-431 (447)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 11.0 2.4E+02 0.017 19.3 9.3 27 320-346 65-91 (100)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 4.8 5.1E+02 0.037 17.7 9.3 28 320-347 71-98 (107)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 4.4 9E+02 0.065 20.0 27.6 30 497-526 403-432 (447)
5 d1lghb_ f.3.1.1 (B:) Light-har 4.1 2.8E+02 0.02 15.9 2.2 29 177-205 10-38 (43)
6 d2axtz1 f.17.5.1 (Z:1-62) Phot 3.1 5.8E+02 0.042 15.7 4.5 27 486-512 18-52 (62)
7 d1xmec1 f.23.9.1 (C:2-34) Bact 3.0 3E+02 0.022 14.0 1.5 9 498-506 20-28 (33)
8 d2yvxa3 f.57.1.1 (A:276-448) M 2.8 9.8E+02 0.071 17.8 9.0 43 161-203 55-99 (173)
9 d1xmeb2 f.17.2.1 (B:3-36) Bact 2.8 4.1E+02 0.03 13.4 3.1 13 507-519 16-28 (34)
10 d1jo5a_ f.3.1.1 (A:) Light-har 2.4 3.5E+02 0.026 15.8 1.4 31 176-206 14-44 (48)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=22.57 E-value=2.3e+02 Score=24.56 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=12.8
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHH
Q 008932 282 GYGIAGAAWATMVSQVVSAYMMIQSL 307 (548)
Q Consensus 282 ~~Gi~Gaa~a~~i~~~~~~~~~~~~~ 307 (548)
..|..+..+.......+..++.+...
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45655555554444444444444443
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.01 E-value=2.4e+02 Score=19.27 Aligned_cols=27 Identities=15% Similarity=-0.027 Sum_probs=18.6
Q ss_pred CChhHHHHHHHhhHHHHHHHHHHHHHH
Q 008932 320 PSTNELATILGLAGPVFITMISKVAFY 346 (548)
Q Consensus 320 ~~~~~~~~~l~~~~p~~~~~~~~~~~~ 346 (548)
.......|+...-+|..+-........
T Consensus 65 ~~~n~~LEiiWTviP~lILi~l~~pS~ 91 (100)
T d3dtub2 65 FTHNSPLEIAWTIVPIVILVAIGAFSL 91 (100)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 344567899999999888666544443
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=4.76 E-value=5.1e+02 Score=17.66 Aligned_cols=28 Identities=14% Similarity=0.038 Sum_probs=19.2
Q ss_pred CChhHHHHHHHhhHHHHHHHHHHHHHHH
Q 008932 320 PSTNELATILGLAGPVFITMISKVAFYS 347 (548)
Q Consensus 320 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~ 347 (548)
.......|+...-+|..+-.........
T Consensus 71 ~~~n~~lEi~WTviP~lIL~~laipSl~ 98 (107)
T d3ehbb2 71 FTHNTPIEVIWTLVPVLILVAIGAFSLP 98 (107)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678899888998877665554443
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.38 E-value=9e+02 Score=20.05 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=17.1
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008932 497 ASRGYGLPGCWFALVCFQSARFLLSLWRLL 526 (548)
Q Consensus 497 ~~~~~G~~G~~~a~~~~~~~~~~~~~~~l~ 526 (548)
....+|..+..+......++..++......
T Consensus 403 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 403 TVDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678777666665555555554444433
No 5
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=4.11 E-value=2.8e+02 Score=15.87 Aligned_cols=29 Identities=7% Similarity=0.017 Sum_probs=16.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008932 177 DKNEVQHQISVLLFVGLACGFLMLLFTRF 205 (548)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (548)
+.++...++.+++..-..++++.=++.+.
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~ 38 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWV 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777766655555555444443
No 6
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.09 E-value=5.8e+02 Score=15.67 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhcCC--------chhHHHHHHH
Q 008932 486 CFLLGALVLLFASRGYG--------LPGCWFALVC 512 (548)
Q Consensus 486 ~~~v~~~~~~~~~~~~G--------~~G~~~a~~~ 512 (548)
..++++|..+..+.+|+ ..++|+++++
T Consensus 18 ~lVVgVPV~~ASP~gW~~sK~lvfsG~~~W~~LV~ 52 (62)
T d2axtz1 18 VMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVL 52 (62)
T ss_dssp HHHHHHHHHHHCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHheeceEEEECCCcccccCceEEEchhHHHHHHH
Confidence 34566676666665554 4566666654
No 7
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=3.00 E-value=3e+02 Score=14.04 Aligned_cols=9 Identities=11% Similarity=-0.086 Sum_probs=3.5
Q ss_pred HhcCCchhH
Q 008932 498 SRGYGLPGC 506 (548)
Q Consensus 498 ~~~~G~~G~ 506 (548)
.+++|+..+
T Consensus 20 vfw~gv~av 28 (33)
T d1xmec1 20 VFWLGVYAV 28 (33)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444333
No 8
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=2.84 E-value=9.8e+02 Score=17.82 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008932 161 LSIATSNMVATSLARQ--DKNEVQHQISVLLFVGLACGFLMLLFT 203 (548)
Q Consensus 161 l~~a~~~~~s~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (548)
.++-..+.+-|..+.+ +.++..+.+.+=+..+++.+..+.++.
T Consensus 55 ~G~Qs~ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i~ 99 (173)
T d2yvxa3 55 TGNQSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLL 99 (173)
T ss_dssp HHHHHHHHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445666666554 445566677776777777777666553
No 9
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=2.83 E-value=4.1e+02 Score=13.42 Aligned_cols=13 Identities=23% Similarity=0.467 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 008932 507 WFALVCFQSARFL 519 (548)
Q Consensus 507 ~~a~~~~~~~~~~ 519 (548)
|+++.++++..++
T Consensus 16 wlafslamlfvfi 28 (34)
T d1xmeb2 16 WLAFSLAMLFVFI 28 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554444
No 10
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.35 E-value=3.5e+02 Score=15.81 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=17.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008932 176 QDKNEVQHQISVLLFVGLACGFLMLLFTRFF 206 (548)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (548)
++-++...++..++..-..++++.=++.+..
T Consensus 14 ~EA~E~H~~~~~g~~~F~~iAvvAH~L~w~w 44 (48)
T d1jo5a_ 14 EQAQELHSVYMSGLWLFSAVAIVAHLAVYIW 44 (48)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666666665555555554444433
Done!