Query 008934
Match_columns 548
No_of_seqs 170 out of 2147
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 15:03:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 1.3E-28 4.4E-33 263.7 34.7 437 12-530 8-478 (491)
2 2xut_A Proton/peptide symporte 100.0 7.5E-28 2.6E-32 260.0 25.7 450 13-531 8-510 (524)
3 1pw4_A Glycerol-3-phosphate tr 99.9 2.9E-24 9.8E-29 226.6 31.8 397 16-527 27-437 (451)
4 3o7q_A L-fucose-proton symport 99.9 2.7E-23 9.4E-28 218.4 33.2 353 13-484 22-408 (438)
5 4gc0_A D-xylose-proton symport 99.9 1.3E-20 4.5E-25 201.2 30.4 419 51-545 53-485 (491)
6 2gfp_A EMRD, multidrug resista 99.9 7.6E-22 2.6E-26 203.5 15.4 167 20-218 3-169 (375)
7 2cfq_A Lactose permease; trans 99.8 1.7E-21 5.8E-26 204.6 11.6 394 17-531 7-407 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1E-12 3.4E-17 138.0 18.0 177 17-222 252-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 1.2E-11 4E-16 129.4 19.9 167 17-217 258-426 (438)
10 2cfq_A Lactose permease; trans 99.3 1.1E-11 3.6E-16 129.8 15.0 174 19-223 222-399 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 2E-10 6.9E-15 122.1 12.6 187 17-226 283-474 (491)
12 4gc0_A D-xylose-proton symport 98.9 5.6E-08 1.9E-12 103.0 21.2 184 18-228 277-467 (491)
13 2gfp_A EMRD, multidrug resista 98.8 1.1E-09 3.7E-14 112.1 2.0 163 17-211 199-364 (375)
14 2xut_A Proton/peptide symporte 98.2 7.4E-07 2.5E-11 95.3 4.9 150 54-225 336-504 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=1.3e-28 Score=263.67 Aligned_cols=437 Identities=16% Similarity=0.165 Sum_probs=286.6
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHh-----hcCChhHHHHHHHHHHHHHHHHHHHHHHHhhc-cccchH
Q 008934 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCRE-----YNMETTAATNIIFIWTAATNFLPIVGALLADS-YVGRYR 85 (548)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr-~~Grk~ 85 (548)
.++++|.++.+....+++++++|++..+++.|++++ +|+++.+++++.+.+.++..++++++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~ 86 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP 86 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence 355678899999999999999999999999999998 99999999999999999999999999999999 7 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCC
Q 008934 86 MIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT 165 (548)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 165 (548)
++.++.++..++.+++.+++ +.+.++++|+++|+|.+...++..++++|.+|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-- 141 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPF-----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD-- 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT--
T ss_pred HHHHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc--
Confidence 99999999999998888655 67789999999999999999999999999999866
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceecc---CCCC-CCchhHH
Q 008934 166 KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKS---KANT-SLLPGLT 241 (548)
Q Consensus 166 ~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~~~~~~ 241 (548)
+.|+.++++++...++|..++|.+++++.++.||+++|++.++..+++.+......++..++ ++++ .+..+..
T Consensus 142 ---~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
T 4aps_A 142 ---RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVK 218 (491)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHH
T ss_pred ---ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhH
Confidence 34788999999999999999999999999999999999998877766666554433322211 1111 1111111
Q ss_pred HHH--------------HHHHhhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCC--C
Q 008934 242 QVL--------------VASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNP--N 305 (548)
Q Consensus 242 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~ 305 (548)
+.. ........... +........ ........+... ...... ..+....... +
T Consensus 219 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~ 286 (491)
T 4aps_A 219 PLLVKVSLAVAGFIAIIVVMNLVGWNSL---PAYINLLTI-----VAIAIPVFYFAW---MISSVK-VTSTEHLRVVSYI 286 (491)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHSSCCT---THHHHHHHH-----HHHHHHHHHHHH---HC-------------CTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccc---ccchhhhhH-----HHHHHHHHHHHH---Hhhccc-ccHHHHHHHHHHH
Confidence 100 00000100000 000000000 000000000000 000000 0000000000 0
Q ss_pred ccch--------HHHHHHHHHHHHHhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchH
Q 008934 306 SLCT--------VEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKL 377 (548)
Q Consensus 306 ~~~~--------~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (548)
..+. ..+.......+..+..+.. ..+.+.+...+.+..++..++.++ +.+|+++|+ .....
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----l~~r~~~r~--~~~~~ 355 (491)
T 4aps_A 287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAW----LWTAWKKNQ--PSSPT 355 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHH----HHHHTTTC-----CHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHH----HHHHHhccC--CCchH
Confidence 0000 0000000000001111111 144567777888888877776444 456665553 45667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHH
Q 008934 378 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI 457 (548)
Q Consensus 378 ~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~ 457 (548)
.+.+|.++.+++++.+...... .+ ...+.+.+++++.+++.+++++...+..++++.+..|++.||+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~ 422 (491)
T 4aps_A 356 KFAVGLMFAGLSFLLMAIPGAL-------YG------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQ 422 (491)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHH-------CC------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------cC------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHH
Confidence 7788999999998887665411 00 0123467788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008934 458 ASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 530 (548)
Q Consensus 458 ~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 530 (548)
++|+.+...++|+.+++.+.+.+.+. ++...|+..+++.++..++.+...++.+++
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998776531 245667787888877777766665554433
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=7.5e-28 Score=260.03 Aligned_cols=450 Identities=20% Similarity=0.308 Sum_probs=273.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhc------CChhHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchH
Q 008934 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYN------METTAATNIIFIWTAATNFLPIVGALLADSYV-GRYR 85 (548)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~-Grk~ 85 (548)
++++|.++.+.+..++.++++|++.++++.|+++++| +++.+++++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~ 86 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYN 86 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchH
Confidence 3446778888899999999999999999999999999 999999999999999999999999999999 6 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCC
Q 008934 86 MIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT 165 (548)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 165 (548)
++.++.++..++.+++.++. .+.+.++++|++.|++.+...++..++++|.+|++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r- 143 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK- 143 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTS----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch-
Confidence 99999999999888887643 1567788999999999999999999999999998663
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHH
Q 008934 166 KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLV 245 (548)
Q Consensus 166 ~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (548)
+++...+++.+...++|.+++|.+++++.+..||+++|++.++..+++.+..+...++.+++++++++..+..+.+.
T Consensus 144 ---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (524)
T 2xut_A 144 ---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIR 220 (524)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHH
Confidence 22355666789999999999999999999989999999998887776666555444433322222221111111111
Q ss_pred HHHhhccCCCCC---------------------------------------cchhhh--hhcC-C-CC-cccCCcch-hh
Q 008934 246 ASFKNRRTKLPT---------------------------------------QATEEM--YHHG-K-GS-MRLMPSEN-LR 280 (548)
Q Consensus 246 ~~~~~~~~~~~~---------------------------------------~~~~~~--~~~~-~-~~-~~~~~~~~-~~ 280 (548)
...++++...++ +..+.+ .+.. . .. ........ ..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (524)
T 2xut_A 221 SALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLR 300 (524)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHH
T ss_pred HHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHH
Confidence 111111100000 000000 0000 0 00 00000000 00
Q ss_pred hHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCceecCcccchhhHHHHHHHHHHHHHHHH
Q 008934 281 FLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVL 360 (548)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~~~~~~~~~~~~ii~~~~l~~~~~~ 360 (548)
........ ...|..+ .+....... ....++... + .+.+.+...+.+..++..++.+++..
T Consensus 301 ~~~~~~~~-------------~~~~~~~--~~~~~~~~~-~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (524)
T 2xut_A 301 ILVLFALV-------------TPFWSLF--DQKASTWIL-QANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLY 360 (524)
T ss_dssp HHHHHTTS-------------HHHHTTT--SSTTTHHHH-HHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC--
T ss_pred HHHHHHHH-------------HHHHHHH--hccchhhHH-hHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhH
Confidence 00000000 0000000 000000000 011112110 0 23445556666666777776666555
Q ss_pred hhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhh
Q 008934 361 PLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMI 440 (548)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~ 440 (548)
|..+|..++ .+..+++.+|.++.+++++.+...... .+ .....+.+++++.+++.+++++...+
T Consensus 361 ~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~~~~~~l~g~~~~~~~~ 424 (524)
T 2xut_A 361 PAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLM----------MD---GGSALSIFWQILPYALLTFGEVLVSA 424 (524)
T ss_dssp -------------CCHHHHHTHHHHHHHHHHTTTTTTTT----------TT---TTCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHH----------hc---CCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 555554333 566677888999888888776553200 00 00124677888899999999999999
Q ss_pred hhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHHH
Q 008934 441 GQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPS-NINKGHYDYYYWLLTALSMANFLY 519 (548)
Q Consensus 441 ~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~v~~~~ 519 (548)
..++++.+.+|++.||+++|+.++..++|+.+|+.+.+.+.+..+ .+|..+ +.+ .....|++.+++.+++.++
T Consensus 425 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 498 (524)
T 2xut_A 425 TGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMS--VTAFQMFFFAGFAILAAIV 498 (524)
T ss_dssp HHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSC--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccccccccc--ccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764221 123210 000 1123377778888888777
Q ss_pred HHHhhhcccccC
Q 008934 520 YLACCKAYGPFK 531 (548)
Q Consensus 520 ~~~~~~~~~~~~ 531 (548)
++...+++++++
T Consensus 499 ~~~~~~~~~~~~ 510 (524)
T 2xut_A 499 FALYARSYQMQD 510 (524)
T ss_dssp HC----------
T ss_pred HHHHHHHhccch
Confidence 776666555443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=2.9e-24 Score=226.64 Aligned_cols=397 Identities=10% Similarity=0.011 Sum_probs=252.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
++.++......++..+..+.+.+.++.+ .+++ .++.+.+++.+++.++..++.+++|+++||+ |||+++.++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 3445555666677777777677777765 5567 9999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHH----hcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhh
Q 008934 96 LGMVLLWS----TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (548)
Q Consensus 96 ~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (548)
++.+++++ +. +.+.++++|+++|++.+...++..+++.|.+|+ ++|
T Consensus 104 ~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r 153 (451)
T 1pw4_A 104 AVMLFMGFVPWATS-----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KER 153 (451)
T ss_dssp HHHHHHHHCHHHHS-----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THH
T ss_pred HHHHHHHhhhhccc-----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------hhh
Confidence 99999988 55 667899999999999999999999999999998 449
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHHHHHHhcCCceeccCCC--CCCchhHHHHHHHHH
Q 008934 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLASPFYVKSKAN--TSLLPGLTQVLVASF 248 (548)
Q Consensus 172 ~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 248 (548)
++++++.+...++|.+++|.+++++.+..| |+++|++.++..++..++.....++.+++... .++..+.... ..
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 230 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD---DY 230 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccc---cc
Confidence 999999999999999999999999888888 99999998887766555444433332221110 0000000000 00
Q ss_pred hhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCC
Q 008934 249 KNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRH 328 (548)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (548)
.+.. .++....+... +.......+..+.... .+........... ....+...
T Consensus 231 ~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~-~~~~~~~~ 282 (451)
T 1pw4_A 231 NEKA--EQELTAKQIFM-----QYVLPNKLLWYIAIAN--------------------VFVYLLRYGILDW-SPTYLKEV 282 (451)
T ss_dssp ----------CCTHHHH-----HHTSSCHHHHHHHHHH--------------------HHHHHHHHHHHHH-HHHHBTTB
T ss_pred hhhh--hcccccccchH-----HHHHcCHHHHHHHHHH--------------------HHHHHHHHHHHHH-HHHHHHHh
Confidence 0000 00000000000 0000000000000000 0000000001111 12222222
Q ss_pred CCCCceecCcc---cchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCC--CchHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 008934 329 VTPNFEIPSGS---FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL--SLKLRMGIGLLFST-ASMTAWAIVEAARRS 402 (548)
Q Consensus 329 lg~~~~i~~~~---~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~iG~~l~~-i~~~~~~~~~~~~~~ 402 (548)
.+ .++.. +.....+..++.. ++..++.+| . ++++.+.++.++.. ++++.+...
T Consensus 283 ~g----~~~~~~~~~~~~~~~~~~~~~--------~~~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 341 (451)
T 1pw4_A 283 KH----FALDKSSWAYFLYEYAGIPGT--------LLCGWMSDK---VFRGNRGATGVFFMTLVTIATIVYWMN------ 341 (451)
T ss_dssp SC----CCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH---TSTTCHHHHHHHHHHHHHHHHHHTTSC------
T ss_pred cC----CCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHh------
Confidence 22 33222 2222222222222 223333333 3 44455555655554 555544322
Q ss_pred HhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 008934 403 IAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSA-ANLVASLIMNAVD 481 (548)
Q Consensus 403 ~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~-g~~lg~~~~~~i~ 481 (548)
.+.+.+.+....++.|++.+...+..+.+..+..|++.||+++|+.+...++ |..+++.+.+.+.
T Consensus 342 --------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~ 407 (451)
T 1pw4_A 342 --------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 407 (451)
T ss_dssp --------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1125666777788888888888888889999999999999999999999999 9999999999876
Q ss_pred hhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008934 482 DITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 527 (548)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 527 (548)
+.. ++...|+..+++.+++.++.+...++.
T Consensus 408 ~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (451)
T 1pw4_A 408 DFF----------------GWDGGFMVMIGGSILAVILLIVVMIGE 437 (451)
T ss_dssp HSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 422 256778888888888877766654433
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=2.7e-23 Score=218.44 Aligned_cols=353 Identities=13% Similarity=0.061 Sum_probs=232.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Q 008934 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (548)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~ 92 (548)
+++++.+..+....++..+..+...+.+|. +++++|+|+.+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 344555566666677777777666666665 6889999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHH---HHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccch
Q 008934 93 TCLLGMVLL---WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (548)
Q Consensus 93 ~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 169 (548)
+..++.+++ ..+. +.+.++++|++.|+|.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------ 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEIM-----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------ 150 (438)
T ss_dssp HHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------
T ss_pred HHHHHHHHHHhccccc-----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------
Confidence 999999888 5444 78899999999999999999999999999999854
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccC-------------------------chhhhHHHHHHHHHHHHHHHhc
Q 008934 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQ-DNLG-------------------------WKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 170 ~r~~~~~~~~~~~~ig~~~gp~i~~~l~-~~~g-------------------------~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
|++++++.+...++|..++|.+++++. +..+ |++.|++.++..++..+..+..
T Consensus 151 -r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 151 -GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999988 5544 8999987776555544444332
Q ss_pred -CCceeccCCCCCCchhHHHHHHHHHhhccCCCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCC
Q 008934 224 -SPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRAS 302 (548)
Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 302 (548)
.|+.+++++++++..+..+.....++++. +...-....
T Consensus 230 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~--------------- 268 (438)
T 3o7q_A 230 KFPALQSDNHSDAKQGSFSASLSRLARIRH--------------------------WRWAVLAQF--------------- 268 (438)
T ss_dssp CCCCCTTTCCCCSSTTSHHHHHHHHTTCSH--------------------------HHHHHHHHH---------------
T ss_pred cCCcccccccccccccchhhhHHHHHhChH--------------------------HHHHHHHHH---------------
Confidence 22222111111111111111111111100 000000000
Q ss_pred CCCccchHHHHHHHHHHHHHhh-ccCCCCCCceecCcc---cchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHH
Q 008934 303 NPNSLCTVEQVEELKALIKASS-MDRHVTPNFEIPSGS---FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLR 378 (548)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~-~~~~lg~~~~i~~~~---~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 378 (548)
.+...+ ...... .... ....++ .+... +.....+..++ ..++..++.+| .++++.
T Consensus 269 ----~~~~~~-~~~~~~-~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~--------~~~~~g~l~~r---~~~~~~ 327 (438)
T 3o7q_A 269 ----CYVGAQ-TACWSY-LIRYAVEEIPG----MTAGFAANYLTGTMVCFFI--------GRFTGTWLISR---FAPHKV 327 (438)
T ss_dssp ----HHHHHH-HHHHHH-HHHHHHHHSTT----CCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH---SCHHHH
T ss_pred ----HHHHHH-HHHHHH-HHHHhhhccCC----cchhHHHHHHHHHHHHHHH--------HHHHHHHHHHH---hcchHH
Confidence 000000 000000 0111 112222 22221 12222222222 22233334444 566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHH
Q 008934 379 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 458 (548)
Q Consensus 379 ~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~ 458 (548)
+.++.++.+++++.+.+.. +. +.....++.+++.+...|..+.+..+..|++ ++.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~----------------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 383 (438)
T 3o7q_A 328 LAAYALIAMALCLISAFAG----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYG 383 (438)
T ss_dssp HHHHHHHHHHHHHHHHHCC----------------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHH
T ss_pred HHHHHHHHHHHHHHHHHcC----------------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccch
Confidence 7788888877776665432 22 3344557888899999999999988999977 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008934 459 STLSGAGLSAANLVASLIMNAVDDIT 484 (548)
Q Consensus 459 ~g~~~~~~~~g~~lg~~~~~~i~~~~ 484 (548)
+++.. ...+|+.++|.+.+.+.+..
T Consensus 384 ~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 384 SSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 99887 67799999999999877543
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.88 E-value=1.3e-20 Score=201.25 Aligned_cols=419 Identities=12% Similarity=0.059 Sum_probs=222.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccch
Q 008934 51 ETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQL 130 (548)
Q Consensus 51 s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (548)
+..+.+++.+++.++..++++++|+++||+ |||+++.++.+++.++.++++++.......... ......-..+.
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~-----~~~~~~~a~~~ 126 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPD-----NTVPVYLAGYV 126 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS-----SSCCGGGGGCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch-----hHHHHHHhhhH
Confidence 346678999999999999999999999996 999999999999999999988543100000000 00000012378
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------cCc
Q 008934 131 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN--------LGW 202 (548)
Q Consensus 131 ~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~--------~g~ 202 (548)
+.++++|+++|+|.|+..+..+.+++|..|+ ++|++..++.+....+|..+++.++..+... .+|
T Consensus 127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 8899999999999999999999999999998 4599999999999999999998877766543 246
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCCCCCcchhhhhhcCC--CCcccCCcchhh
Q 008934 203 KVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGK--GSMRLMPSENLR 280 (548)
Q Consensus 203 ~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 280 (548)
+..+.+..+..++..+.. ...|+-+.--..+....+..+.+.....+........+.+....+++ ..+.........
T Consensus 200 ~~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (491)
T 4gc0_A 200 RYMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVI 278 (491)
T ss_dssp HHHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHH
T ss_pred HHHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHH
Confidence 666655554433333322 22222111000000111111111110000000000000000000000 000000000000
Q ss_pred hHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHH-HHhhccCCCCCCceecCc-ccchhhHHHHHHHHHHHHHH
Q 008934 281 FLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALI-KASSMDRHVTPNFEIPSG-SFNIFAILTLTIWIGLYDRA 358 (548)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lg~~~~i~~~-~~~~~~~~~ii~~~~l~~~~ 358 (548)
..... ....++......+. .........+ ...... .......+..++. ..+
T Consensus 279 ~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~ 331 (491)
T 4gc0_A 279 VIGVM---------------------LSIFQQFVGINVVLYYAPEVFKTLG--ASTDIALLQTIIVGVINLTF----TVL 331 (491)
T ss_dssp HHHHH---------------------HHHHHHHTCHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHH---------------------HHHHHHHhhhhHHHhcchHHHHhcC--CCccchhhHHHHHHHHHHHH----HHH
Confidence 00000 00000000000000 0111111111 000000 1111111111111 112
Q ss_pred HHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccchHHHHHHHHHHHHHHHH-
Q 008934 359 VLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAF- 437 (548)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~g~~~- 437 (548)
...+.+| .++++.+..+....+++++.++.... .....+..+....+...+...
T Consensus 332 ~~~l~dr-------~Grr~~~~~~~~~~~~~~~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 332 AIMTVDK-------FGRKPLQIIGALGMAIGMFSLGTAFY------------------TQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp HHHHHHH-------HCSHHHHHHHHHHHHHHHHHHHHHHH------------------TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHh-------hcCcchhccchHHHHHHHHHHHHHHh------------------cccchHHHHHHHHHHHHHHHhH
Confidence 2333444 44456677788888887777655431 111222223333333333322
Q ss_pred HhhhhhhhcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 008934 438 NMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANF 517 (548)
Q Consensus 438 ~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~ 517 (548)
..|..+.+..+..|++.|++++|+.+..+.+++.+++.+.+.+..... .. ...+....|++.+++++++.
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~-------~~---~~~~~~~~~~i~~~~~~~~~ 456 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW-------LV---AHFHNGFSYWIYGCMGVLAA 456 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH-------HH---HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---hhhhhhHHHHHHHHHHHHHH
Confidence 335556778889999999999999999999999999988877543211 00 00012456888899999999
Q ss_pred HHHHHhhhcccccCCCc-ccccCCCCCcc
Q 008934 518 LYYLACCKAYGPFKGRV-GTAFDDKDGME 545 (548)
Q Consensus 518 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 545 (548)
++.+++.+|+++++.|| ++.++++++.+
T Consensus 457 i~~~~~~PETkg~tLeei~~~f~~~~~~~ 485 (491)
T 4gc0_A 457 LFMWKFVPETKGKTLEELEALWEPETKKT 485 (491)
T ss_dssp HHHHHHCCCCTTCCHHHHGGGTC------
T ss_pred HHHHheecCCCCCCHHHHHHHhCCCCccc
Confidence 98888899999999888 55565554433
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.87 E-value=7.6e-22 Score=203.49 Aligned_cols=167 Identities=15% Similarity=0.167 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Q 008934 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99 (548)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 99 (548)
..+....++..+......+.++.+ .+++|.|+.+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 344556667777777777777765 678999999999999999999999999999999996 999999999999999999
Q ss_pred HHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHH
Q 008934 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (548)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 179 (548)
+...++ +.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+
T Consensus 81 ~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 130 (375)
T 2gfp_A 81 VAVTTS-----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ-------LRHANSLLN 130 (375)
T ss_dssp HHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-------CCSHHHHHH
T ss_pred HHHHhc-----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH-------HHHHHHHHH
Confidence 888876 78889999999999999999999999999999854 899999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHH
Q 008934 180 VFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (548)
Q Consensus 180 ~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~ 218 (548)
...++|..++|.+++++.++.||+..|++.++..++..+
T Consensus 131 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 131 MGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888999999988776655544
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.85 E-value=1.7e-21 Score=204.64 Aligned_cols=394 Identities=12% Similarity=0.056 Sum_probs=219.4
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.++......++..+++..+.++++.|+++++|+|+.++|++.+.+.++..++++++|+++||+ ||||++.++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 5677777777777788888899999999999999999999999999999999999999999996 999999998877654
Q ss_pred HHHHH---HHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 97 GMVLL---WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 97 ~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
+.... ...... ...+..++.+.+++.|...+...+...+..++.. ++|+.
T Consensus 86 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~ 138 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-----RRSNF 138 (417)
T ss_dssp CHHHHHHHTHHHHH----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-----HHHTC
T ss_pred HHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-----hhccc
Confidence 32211 111100 0012233444444444444444444444443311 22455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccC
Q 008934 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRT 253 (548)
Q Consensus 174 ~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (548)
.++......++|.+++|.+++++.+ .+|+..|++.++..++..+......++. +++++.++..+ ++
T Consensus 139 ~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~-- 204 (417)
T 2cfq_A 139 EFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA-PSSATVANAVG----------AN-- 204 (417)
T ss_dssp CHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC-SCSSCSSSSSS----------SC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc-ccccccccccc----------cc--
Confidence 5666666778999999999999887 5899999877665433332222212111 00000000000 00
Q ss_pred CCCCcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCc
Q 008934 254 KLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNF 333 (548)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 333 (548)
..+.+.+..... + ....+..+-...... .+.......... ......++ ..
T Consensus 205 -~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~----~~~~~~~~-~~ 254 (417)
T 2cfq_A 205 -HSAFSLKLALEL------F-RQPKLWFLSLYVIGV-----------------SCTYDVFDQQFA----NFFTSFFA-TG 254 (417)
T ss_dssp -CCCCCHHHHHHH------T-TCHHHHHHHHHHHHH-----------------HHHHHHHHHHHH----HHHHHTSS-SH
T ss_pred -cccccHHHHHHH------h-cCCchhhHHHHHHHH-----------------HHHHHHHHHHHH----HHHHHHHh-cc
Confidence 000000000000 0 000000000000000 000000000000 00011110 00
Q ss_pred eecCc---ccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008934 334 EIPSG---SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGIS 410 (548)
Q Consensus 334 ~i~~~---~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 410 (548)
..... ....++.+..++ ...+.+++.|| .++++.+.++.++.+++++.+.+..
T Consensus 255 ~~~~~~~g~~~~~~~~~~~~--------~~~~~g~l~dr---~g~~~~l~~~~~~~~~~~~~~~~~~------------- 310 (417)
T 2cfq_A 255 EQGTRVFGYVTTMGELLNAS--------IMFFAPLIINR---IGGKNALLLAGTIMSVRIIGSSFAT------------- 310 (417)
T ss_dssp HHHTHHHHHHHHHHHHHHHH--------HHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHTTCC-------------
T ss_pred CCChhHHHHHHHHHHHHHHH--------HHHHHHHHHHH---hcHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 01111 111222222222 22233344444 4555667777777777665553321
Q ss_pred CCcccccccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 008934 411 DDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGN 489 (548)
Q Consensus 411 ~~~~~~~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~~g~~lg~~~~~~i~~~~~~~~~ 489 (548)
+.+.++....+.+++.....+....+..+..|++.||++++. ++..+++|+.+||.+.|.+.+..
T Consensus 311 ---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~----- 376 (417)
T 2cfq_A 311 ---------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI----- 376 (417)
T ss_dssp ---------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-----
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-----
Confidence 455566666677777777777778899999999999999999 48888999999999999765321
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 008934 490 GGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK 531 (548)
Q Consensus 490 ~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~ 531 (548)
++...|...+++.+++.++++...+++++.+
T Consensus 377 -----------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 377 -----------GFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred -----------CcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 2466788888888888776665555444333
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.46 E-value=1e-12 Score=138.03 Aligned_cols=177 Identities=16% Similarity=0.154 Sum_probs=149.8
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV--GRYRMIGFGCFTC 94 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~--Grk~~~~~~~~~~ 94 (548)
|.++...+..++..+.++++..+++.|+++.+|+++.+++++.+...++..++.++.|+++|| + |||+.+.++..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 566777778888899999999999999998899999999999999999999999999999999 7 9999888877766
Q ss_pred H-HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 95 L-LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 95 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
. ++.+++.... ..+.+.+.+..++.|++.+...+...+++.|.+|++ .|++
T Consensus 331 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~g~ 382 (451)
T 1pw4_A 331 VTIATIVYWMNP---------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK-------AAGT 382 (451)
T ss_dssp HHHHHHHTTSCC---------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT-------HHHH
T ss_pred HHHHHHHHHHhc---------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh-------hhhh
Confidence 5 4444443321 125566777788889998888888899999999984 4999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHh
Q 008934 174 YFSWYYVFVSA-SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (548)
Q Consensus 174 ~~~~~~~~~~i-g~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~ 222 (548)
++++.+...++ |..++|.+.|++.+..||+..|++.+++.+++.++.+.
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999888877776665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.39 E-value=1.2e-11 Score=129.37 Aligned_cols=167 Identities=11% Similarity=0.044 Sum_probs=138.1
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHH-HhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILY-LCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
|.++......++.....+++..+++.| +++.+|+++.+++++.+...++..++.+++|+++||+ |||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 566777777788888888999999999 8888899999999999999999999999999999996 99999999998888
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
++.++....+ +.+ ..+..++.+++.+...|...++..|.+|++ ++.+.
T Consensus 337 ~~~~~~~~~~-----------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 384 (438)
T 3o7q_A 337 ALCLISAFAG-----------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD--------TKYGS 384 (438)
T ss_dssp HHHHHHHHCC-----------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG--------HHHHH
T ss_pred HHHHHHHHcC-----------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------ccchh
Confidence 8877776543 333 334457888999999999999999998862 55666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC-chhhhHHHHHHHHHHH
Q 008934 176 SWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSA 217 (548)
Q Consensus 176 ~~~~~~~~ig~~~gp~i~~~l~~~~g-~~~~f~i~~~~~~i~~ 217 (548)
++.. ...+|+.++|.+.|++.+..| ++..|++.+++.++..
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 6555 567999999999999999988 9999998766544443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.33 E-value=1.1e-11 Score=129.80 Aligned_cols=174 Identities=9% Similarity=0.018 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 008934 19 LPFIIANEAFERMATVGFTPNMILYLCREYNM---ETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~---s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (548)
++......+.....++....++|.|+.+.++. +....+.+.+...++..++.+++|+++||+ |||+++..+.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence 33333333444445555556788898776653 345567777777788888999999999996 99999998887777
Q ss_pred HHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHH
Q 008934 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (548)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 175 (548)
++..++.+.. +.+.+++...+.+++.+...+....+..|.+|+ +.|++++
T Consensus 301 ~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~ 350 (417)
T 2cfq_A 301 VRIIGSSFAT-----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIY 350 (417)
T ss_dssp HHHHHHTTCC-----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHH
T ss_pred HHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHH
Confidence 7655554322 445566666667777777667778899999998 4589988
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhc
Q 008934 176 SWY-YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (548)
Q Consensus 176 ~~~-~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~ 223 (548)
++. +...++|++++|.++|++.++.|+...|.+.+++.+++.++.+..
T Consensus 351 g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 884 667789999999999999998899999988887777666654443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.13 E-value=2e-10 Score=122.11 Aligned_cols=187 Identities=10% Similarity=-0.002 Sum_probs=140.2
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHH-----HHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIG-----FGC 91 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~-----~~~ 91 (548)
...+......++....++.....++.|+++.++.+..+.+++.....+...++.++.|+++||+ |||+... ++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~ 361 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGL 361 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHH
Confidence 3345555566677777888888999999999999988888888999999999999999999996 9986655 666
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhh
Q 008934 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (548)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 171 (548)
++..++..++........ .....+.+.+.+..++.+++.+...+...+++.|.+|++. |
T Consensus 362 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-------~ 420 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF-------N 420 (491)
T ss_dssp HHHHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC-------S
T ss_pred HHHHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-------H
Confidence 666666555554320000 0011255667778888999999999999999999999955 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCc
Q 008934 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (548)
Q Consensus 172 ~~~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 226 (548)
++++++.+...++|..++|.+.+++.+ .++...|.+.+++.+++.++.+...++
T Consensus 421 g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 421 SQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998876 467778888777776666665555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.93 E-value=5.6e-08 Score=103.03 Aligned_cols=184 Identities=9% Similarity=0.029 Sum_probs=124.3
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 008934 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (548)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (548)
.........++..+..+........++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 334434444444444333444445566778889998888888888899999999999999996 9999999998888877
Q ss_pred HHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhc-cccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGS-GGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~-g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
...+........ ..+..++...+...+. ....+....+.+|.+|.+. |+++++
T Consensus 356 ~~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~-------R~~~~g 409 (491)
T 4gc0_A 356 MFSLGTAFYTQA-------------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI-------RGKALA 409 (491)
T ss_dssp HHHHHHHHHTTC-------------------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT-------HHHHHH
T ss_pred HHHHHHHHhccc-------------------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH-------HHHHHH
Confidence 766654331110 1222222222222222 2234667789999999944 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh------ccCchhhhHHHHHHHHHHHHHHHhcCCcee
Q 008934 177 WYYVFVSASSIVAVTCIVYIQD------NLGWKVGFGVPAVIMLLSALSFFLASPFYV 228 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~------~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~ 228 (548)
+.+...++++.+++.+.+.+.+ ..++...|++.+++.+++.+..++..|+.+
T Consensus 410 ~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 410 IAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 9999999999998877766543 245667788888877777776666666543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.79 E-value=1.1e-09 Score=112.15 Aligned_cols=163 Identities=8% Similarity=-0.033 Sum_probs=127.0
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH-HH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT-CL 95 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~-~~ 95 (548)
|.++......++....++++..++|.|+++.+|+++.+++.+.....++..++.++.|+++||+ |++ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4456666777888888889999999999999999999999999999999999999999999996 772 2333332 22
Q ss_pred HHHH--HHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHH
Q 008934 96 LGMV--LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (548)
Q Consensus 96 ~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 173 (548)
.+.. ...... ..+.+.+.+..++.+++.+...+...++..|.+| ++ |++
T Consensus 276 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~-------~g~ 326 (375)
T 2gfp_A 276 AGLLMWIPDWFG---------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL-------AGT 326 (375)
T ss_dssp TSSSSSHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH-------HHH
T ss_pred HHHHHHHHhhhc---------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc-------cch
Confidence 2222 111110 0145566677888899999999999999999987 33 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHH
Q 008934 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAV 211 (548)
Q Consensus 174 ~~~~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~ 211 (548)
++++.+...++|..++|.+.+.+.+..+|...+.+.+.
T Consensus 327 ~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 327 AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 99999999999999999999999887788877766433
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.20 E-value=7.4e-07 Score=95.29 Aligned_cols=150 Identities=13% Similarity=0.164 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----hccccc----hHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCcCC
Q 008934 54 AATNIIFIWTAATNFLPIVGALLA----DSYVGR----YRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESA 125 (548)
Q Consensus 54 ~ag~i~~~~~~~~~~~~~~~G~la----Dr~~Gr----k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (548)
..+.+.....++..+..++.+++. ||+ |+ ++.+.++.++..++.+++....... +..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------------~~~ 400 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMM--------------DGG 400 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTT--------------TTT
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHh--------------cCC
Confidence 355655555566666666666664 553 43 3556667766666655554321000 000
Q ss_pred CccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--Cc-
Q 008934 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL--GW- 202 (548)
Q Consensus 126 ~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~gp~i~~~l~~~~--g~- 202 (548)
...+.+.+.+..++.|++.+...+...+++.|.+|++. |++++++.+...++|..++|.+.+.+.+.. +|
T Consensus 401 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~ 473 (524)
T 2xut_A 401 SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM-------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQI 473 (524)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC-------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 11245667778889999999999999999999999855 899999999999999999999999987632 12
Q ss_pred --------hhhhHHHHHHHHHHHHHHHhcCC
Q 008934 203 --------KVGFGVPAVIMLLSALSFFLASP 225 (548)
Q Consensus 203 --------~~~f~i~~~~~~i~~~~~~~~~~ 225 (548)
+..|++.+++.+++.++++...+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 474 VQTGMSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33366666665555555444333
Done!