Query 008934
Match_columns 548
No_of_seqs 170 out of 2147
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 15:03:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008934.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008934hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.9 1.9E-23 1.4E-27 216.8 29.3 178 20-225 24-205 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.9 2E-23 1.4E-27 212.2 21.0 400 17-531 7-407 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 99.3 2E-11 1.4E-15 124.9 18.0 179 17-221 249-428 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 99.3 7.1E-12 5.2E-16 125.5 11.6 150 44-224 250-400 (417)
5 d3proc1 d.52.1.1 (C:6-85) Alph 11.2 2E+02 0.014 19.9 5.0 40 41-80 4-43 (80)
6 d1rzhh2 f.23.10.1 (H:11-35) Ph 10.3 96 0.007 16.2 2.2 16 32-47 9-24 (26)
7 d1o82a_ a.64.2.1 (A:) Bacterio 6.0 1.4E+02 0.01 19.1 2.0 22 45-66 2-23 (70)
8 d2qkwa1 a.8.8.1 (A:29-129) Avi 4.3 2E+02 0.015 19.5 2.0 34 433-466 15-49 (101)
9 d2oara1 f.16.1.1 (A:10-118) Ga 4.1 3.8E+02 0.028 19.4 3.8 16 514-529 72-87 (109)
10 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.7 4.2E+02 0.031 18.8 3.8 44 502-545 35-78 (107)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.92 E-value=1.9e-23 Score=216.83 Aligned_cols=178 Identities=12% Similarity=0.002 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHh---hHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 20 PFIIANEAFERMATVG---FTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 20 ~~~~~~~~~~~~~~~~---~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.++...++..+..|. ....+.++++ ++|+|+++.|++.+++.++..++++++|+++||+ |||+++.++.++..+
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4444444443344332 3445556776 6899999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+.++++.+.... .+.+.+++.|++.|++.|...++..++++|.+|+ ++|+++++
T Consensus 102 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~ 155 (447)
T d1pw4a_ 102 VMLFMGFVPWAT-------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVS 155 (447)
T ss_dssp HHHHHHHCHHHH-------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THHHHHHH
T ss_pred HHhhccccchhh-------------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh-------hccccccc
Confidence 888887654111 1567899999999999999999999999999998 44999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-CchhhhHHHHHHHHHHHHHHHhcCC
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALSFFLASP 225 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~-g~~~~f~i~~~~~~i~~~~~~~~~~ 225 (548)
+.+...++|..++|.+++.+.+.. +|++.|++.++..++..++.+...+
T Consensus 156 ~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 156 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred ccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 999999999999999888776654 7999999888766655555444433
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.90 E-value=2e-23 Score=212.21 Aligned_cols=400 Identities=11% Similarity=0.032 Sum_probs=240.4
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.+|.+....++..+++....++++.|+++++|+|+++.|++.+++.++..+++++.|+++||+ ||||++.++.....+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 7788888888999999988999999999999999999999999999999999999999999996 999999999988888
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
+..+.......+. .....++.+.+.+.+.+...........+..++++ +++....+
T Consensus 86 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 141 (417)
T d1pv7a_ 86 MFAPFFIFIFGPL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-----RRSNFEFG 141 (417)
T ss_dssp THHHHHHHTHHHH-------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH-----HHHSCCHH
T ss_pred HHHHHHHhhhhhh-------------------HHHHHHHHHHHhhhcccccccchhhcccccccchh-----hhhHHHHH
Confidence 8777776541110 11123333444444444444444333333333221 23445566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHhcCCceeccCCCCCCchhHHHHHHHHHhhccCCCC
Q 008934 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLP 256 (548)
Q Consensus 177 ~~~~~~~ig~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (548)
........+..++|.+++++.+. +|+..+........+..+......++.+.+++.+++..+ .....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~- 208 (417)
T d1pv7a_ 142 RARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGA-----------NHSAF- 208 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHS-----------CCCCC-
T ss_pred HHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhh-----------hcccc-
Confidence 66677788999999999988775 555555555554444444444433322211111000000 00000
Q ss_pred CcchhhhhhcCCCCcccCCcchhhhHHhhhhhcCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhccCCCCCCceec
Q 008934 257 TQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIP 336 (548)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~i~ 336 (548)
.......... .............. .+......... ........ .
T Consensus 209 --~~~~~~~~~~------~~~~~~~~~~~~~~------------------~~~~~~~~~~~----~~~~~~~~------~ 252 (417)
T d1pv7a_ 209 --SLKLALELFR------QPKLWFLSLYVIGV------------------SCTYDVFDQQF----ANFFTSFF------A 252 (417)
T ss_dssp --CHHHHHHHTT------SSHHHHHHHHHHHH------------------HHHHHHHHHHH----HHHHTTSS------S
T ss_pred --cccccccccc------cccccchhhhhHHH------------------HHHHHhhhccc----cccccccc------c
Confidence 0000000000 00000000000000 00000000000 00001110 0
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccc
Q 008934 337 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV 416 (548)
Q Consensus 337 ~~~~~~~~~~~ii~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (548)
.................+.......+.+++.+| .++++.+.++.++.+++.+.+.+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r---~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 310 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINR---IGGKNALLLAGTIMSVRIIGSSFAT------------------- 310 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHTCC-------------------
T ss_pred ccccchhhhcccccccccccccchhhhhhhhcc---cccccchhhhHHHHHHhhhcccccc-------------------
Confidence 001111111111112222222344455555555 6677778888888888887776543
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhhhhhcccccCchhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCC
Q 008934 417 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS-GAGLSAANLVASLIMNAVDDITKRGGNGGWIPS 495 (548)
Q Consensus 417 ~~~s~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~~g~~lg~~~~~~i~~~~~~~~~~~~~~~ 495 (548)
+.+.+.+..++.+++.+...+...+++.+..|++.||++.|+. ++..++|..+++.+.|.+.+..+
T Consensus 311 ---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g---------- 377 (417)
T d1pv7a_ 311 ---SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG---------- 377 (417)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC----------
T ss_pred ---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
Confidence 6778888889999999999999999999999999999999975 56788999999999998765432
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 008934 496 NINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK 531 (548)
Q Consensus 496 ~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~ 531 (548)
+...|++.+++.++..++..+..++.++..
T Consensus 378 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (417)
T d1pv7a_ 378 ------FQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHSCCSSCTT
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 466788888888887777766666555443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.31 E-value=2e-11 Score=124.87 Aligned_cols=179 Identities=16% Similarity=0.081 Sum_probs=140.1
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 008934 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (548)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (548)
|.++......++.....++...+++.|+.+.+|++..++++......+...++.+++|+++||+ +|++..........+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 327 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHH
Confidence 5667777788888889999999999999999999999999999999999999999999999996 887654444443333
Q ss_pred HHHHHHHhcccCCCCCCCcccccCCCcCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHH
Q 008934 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (548)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 176 (548)
...........+ ..+.+...+..++.|++.++..+....+..|.+|+ +.|+++.+
T Consensus 328 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g 382 (447)
T d1pw4a_ 328 VTIATIVYWMNP------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTAAG 382 (447)
T ss_dssp HHHHHHHTTSCC------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHHHHH
T ss_pred HHHHHHHHHhcc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHH
Confidence 222222211011 12566777777888888888888999999999998 44899999
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHH
Q 008934 177 WYYVFVSA-SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (548)
Q Consensus 177 ~~~~~~~i-g~~~gp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~ 221 (548)
+.+...++ |.+++|.+.|++.+++||+..|++.+++.+++.++..
T Consensus 383 ~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 383 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 99888877 5677899999999999999999887776665555443
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.26 E-value=7.1e-12 Score=125.53 Aligned_cols=150 Identities=8% Similarity=0.025 Sum_probs=126.4
Q ss_pred HhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCCCc
Q 008934 44 LCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCE 123 (548)
Q Consensus 44 l~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 123 (548)
...+.+.+....+.......++..++..+.|++.||+ |+|+++.++.++..++..+....+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~------------------ 310 (417)
T d1pv7a_ 250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT------------------ 310 (417)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC------------------
T ss_pred cccccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc------------------
Confidence 3445566777888888889999999999999999996 999999999998888887777654
Q ss_pred CCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCccchhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhccCc
Q 008934 124 SATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY-VFVSASSIVAVTCIVYIQDNLGW 202 (548)
Q Consensus 124 ~~~~~~~~~~~i~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~~gp~i~~~l~~~~g~ 202 (548)
+.+.+.+..++.|++.+...+...+++.|.+|+ +.|+++++..+ ....+|..++|.+.|++.|++|+
T Consensus 311 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~ 378 (417)
T d1pv7a_ 311 -----SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF 378 (417)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG-------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCH
T ss_pred -----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence 677788888899999999999999999999998 44899999865 45679999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhcC
Q 008934 203 KVGFGVPAVIMLLSALSFFLAS 224 (548)
Q Consensus 203 ~~~f~i~~~~~~i~~~~~~~~~ 224 (548)
+..|++.+++.++..++..+..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 379 QGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999988877776666555443
No 5
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=11.23 E-value=2e+02 Score=19.87 Aligned_cols=40 Identities=8% Similarity=0.042 Sum_probs=32.7
Q ss_pred HHHHhHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008934 41 ILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY 80 (548)
Q Consensus 41 ~~yl~~~lg~s~~~ag~i~~~~~~~~~~~~~~~G~laDr~ 80 (548)
.-=|+++||+++.++.--+..-.-...+-.-+-.-+.|+|
T Consensus 4 ~~AmqRDLgLt~~qa~~RLa~E~~A~~~~~~lr~~lg~~f 43 (80)
T d3proc1 4 KFAMQRDLGIFPTQLPQYLQTEKLARTQAAAIEREFGAQF 43 (80)
T ss_dssp HHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3457899999999999888887777778887878887776
No 6
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.32 E-value=96 Score=16.20 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=11.3
Q ss_pred HHHhhHHHHHHHHhHh
Q 008934 32 ATVGFTPNMILYLCRE 47 (548)
Q Consensus 32 ~~~~~~~~l~~yl~~~ 47 (548)
.++++...+..|++++
T Consensus 9 ~fw~ffalli~ylqte 24 (26)
T d1rzhh2 9 SFWIFLAGLIYYLQTE 24 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3456667788888865
No 7
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=5.96 E-value=1.4e+02 Score=19.06 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=15.5
Q ss_pred hHhhcCChhHHHHHHHHHHHHH
Q 008934 45 CREYNMETTAATNIIFIWTAAT 66 (548)
Q Consensus 45 ~~~lg~s~~~ag~i~~~~~~~~ 66 (548)
.+++|++.+.++.++.+...+.
T Consensus 2 akefgipa~ia~~vlniv~agg 23 (70)
T d1o82a_ 2 AKEFGIPAAVAGTVLNVVEAGG 23 (70)
T ss_dssp HHHHCCCHHHHHHHHHHHHTTC
T ss_pred chhhCCcHHHHHHHHHhhccCc
Confidence 5688888888887776654433
No 8
>d2qkwa1 a.8.8.1 (A:29-129) Avirulence protein AvrPto {Pseudomonas syringae [TaxId: 317]}
Probab=4.28 E-value=2e+02 Score=19.45 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=24.7
Q ss_pred HHHHHHhhh-hhhhcccccCchhhHHHHHHHHHHH
Q 008934 433 LAMAFNMIG-QTEFYYTELPKSMSSIASTLSGAGL 466 (548)
Q Consensus 433 ~g~~~~~~~-~~~~~~~~~P~~~rg~~~g~~~~~~ 466 (548)
++|....|- .-+++++++|...|+.+..++.-.+
T Consensus 15 laesaglprdqhefissqap~slr~~ynnlyshtq 49 (101)
T d2qkwa1 15 LAESAGLPRDQHEFVSSQAPQSLRNRYNNLYSHTQ 49 (101)
T ss_dssp HHHHCCCCHHHHTTTSSSCCSSGGGHHHHHHHHHH
T ss_pred HHHhcCCCccHHHHHhhcCcHHHHHHHhhHHHHHH
Confidence 445444443 3589999999999999998885543
No 9
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.06 E-value=3.8e+02 Score=19.35 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhhcccc
Q 008934 514 MANFLYYLACCKAYGP 529 (548)
Q Consensus 514 ~v~~~~~~~~~~~~~~ 529 (548)
++++++|+...+.+++
T Consensus 72 IiA~vv~F~vvk~~n~ 87 (109)
T d2oara1 72 LIAFAVYFLVVLPYNT 87 (109)
T ss_dssp HHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 10
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.74 E-value=4.2e+02 Score=18.79 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccccCCCCCcc
Q 008934 502 YDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGME 545 (548)
Q Consensus 502 ~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (548)
.+..+++...+.++-.........++++++....+....++..|
T Consensus 35 h~~v~~i~~~I~~~V~~~~~~~~~~~r~~~~~~~~~~~~n~~lE 78 (107)
T d3ehbb2 35 DHFVLYIITAVTIFVCLLLLICIVRFNRRANPVPARFTHNTPIE 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSBTTTSSSCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchHHH
Done!