BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008936
(548 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 426 MDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFS 480
+ SS ++E L +Y +K+DS ++ + + + VPCG+ QF + F
Sbjct: 102 LSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFG 156
>pdb|4DIX|A Chain A, Crystal Structure Of The Ig-Ph Domain Of Actin-Binding
Protein Scab1
pdb|4DIX|B Chain B, Crystal Structure Of The Ig-Ph Domain Of Actin-Binding
Protein Scab1
Length = 230
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 10/125 (8%)
Query: 337 CMFQWVRHLQDGT-RHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFAND 395
C QW R DG+ + I GAT Y DV +++ + I D V
Sbjct: 42 CTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADII-YDGHSLSLSTV------ 94
Query: 396 QNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATL-ILRRSIYRIKIDSTEAI 454
KI G+ S ++A + + F+V++ S E+ ++ + RIK+ + +
Sbjct: 95 -GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTV 153
Query: 455 IEERF 459
I + +
Sbjct: 154 IAKEY 158
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 386 GELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYR 445
G+ + R + DQN +K D G DAYI G N EQA + LR++
Sbjct: 27 GQQMGRTSGDQNPLKTDKGRDEARDAYIQLGLGYL-------QRGNTEQAKVPLRKA--- 76
Query: 446 IKIDSTEA 453
++ID + A
Sbjct: 77 LEIDPSSA 84
>pdb|4AFX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In I2
Space Group
pdb|4AJU|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In P41
Space Group
Length = 387
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 61 QKEEIHSLRQQIAV-------ACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALN 113
QK E+H L +Q+ + A L EL + R + + +DE+ EA+ L+
Sbjct: 323 QKYEMHELLRQMGIRRIFSPFADLSELSATGRNLQVSRVLQRTVIEVDERGTEAVAGILS 382
Query: 114 ELARR 118
E+ R
Sbjct: 383 EITAR 387
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 426 MDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFS 480
+ SS ++E L + +Y + ID + + + + + VPCG+ QF + F
Sbjct: 104 LSSSASFEVGILEVLNQLYNLNIDPLKKALLAKKAENEFVGVPCGILDQFAVVFG 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,059,974
Number of Sequences: 62578
Number of extensions: 591556
Number of successful extensions: 1469
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1463
Number of HSP's gapped (non-prelim): 18
length of query: 548
length of database: 14,973,337
effective HSP length: 104
effective length of query: 444
effective length of database: 8,465,225
effective search space: 3758559900
effective search space used: 3758559900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)