Query 008936
Match_columns 548
No_of_seqs 46 out of 48
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 15:06:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dix_A Plectin-related protein 99.9 3.6E-26 1.2E-30 218.7 17.6 189 312-508 15-212 (230)
2 3o0z_A RHO-associated protein 55.6 63 0.0022 30.4 9.4 55 51-105 15-83 (168)
3 2q6q_A Spindle POLE BODY compo 46.3 27 0.00094 29.1 4.8 29 50-78 4-39 (74)
4 2dfs_A Myosin-5A; myosin-V, in 46.2 56 0.0019 37.6 9.0 29 161-189 1020-1048(1080)
5 3he5_B Synzip2; heterodimeric 44.6 34 0.0012 26.5 4.7 40 66-105 6-45 (52)
6 3mq7_A Bone marrow stromal ant 43.8 18 0.0006 32.7 3.6 41 56-96 71-111 (121)
7 4hci_A Cupredoxin 1; structura 40.5 21 0.00071 28.7 3.3 33 458-491 24-56 (100)
8 3oja_B Anopheles plasmodium-re 39.7 76 0.0026 32.4 8.0 8 87-94 526-533 (597)
9 3tnu_B Keratin, type II cytosk 36.2 63 0.0022 28.0 5.9 48 58-105 31-78 (129)
10 3oja_B Anopheles plasmodium-re 35.6 8.8 0.0003 39.3 0.4 27 165-191 552-578 (597)
11 4e81_A Chaperone protein DNAK; 35.0 59 0.002 30.5 5.9 31 85-115 173-203 (219)
12 1gk7_A Vimentin; intermediate 34.0 34 0.0012 25.1 3.2 34 62-95 5-38 (39)
13 2dfs_A Myosin-5A; myosin-V, in 34.0 1.2E+02 0.0041 35.0 9.1 18 57-74 985-1002(1080)
14 1i84_S Smooth muscle myosin he 33.7 87 0.003 36.0 8.0 14 62-75 863-876 (1184)
15 3tnu_A Keratin, type I cytoske 31.6 47 0.0016 29.0 4.3 49 58-106 33-81 (131)
16 2l2l_B Methyl-CPG-binding doma 31.5 25 0.00086 25.9 2.1 21 57-77 11-31 (36)
17 2gtv_X CM, chorismate mutase; 30.3 1.5E+02 0.0053 25.3 7.2 75 64-138 4-103 (104)
18 3kbt_A Beta-I spectrin, spectr 30.2 3.3E+02 0.011 25.2 13.7 127 50-189 38-169 (326)
19 4ani_A Protein GRPE; chaperone 28.2 4.1E+02 0.014 25.5 10.7 63 140-210 109-175 (213)
20 3efg_A Protein SLYX homolog; x 27.2 83 0.0028 25.8 4.8 34 88-124 11-46 (78)
21 4h22_A Leucine-rich repeat fli 27.1 1.3E+02 0.0043 26.6 6.1 61 56-133 37-97 (103)
22 3iyk_A VP5; icosahedral virus; 26.9 4.9E+02 0.017 28.4 11.7 117 41-182 82-207 (526)
23 3dde_A TENA/THI-4 protein, dom 26.7 56 0.0019 30.1 4.1 52 93-144 179-236 (239)
24 4fla_A Regulation of nuclear P 24.9 1.9E+02 0.0064 26.4 7.1 110 18-146 37-147 (152)
25 2etd_A LEMA protein; bromodoma 24.9 53 0.0018 30.2 3.6 48 132-191 75-123 (171)
26 2rlo_A Centaurin-gamma 1; spli 24.7 65 0.0022 26.5 3.8 39 470-508 87-125 (128)
27 1sf9_A YFHH hypothetical prote 24.6 80 0.0027 28.7 4.5 33 60-94 36-68 (128)
28 2lf0_A Uncharacterized protein 23.4 83 0.0028 28.5 4.4 36 62-97 9-56 (123)
29 1u4q_A Spectrin alpha chain, b 22.2 4.6E+02 0.016 24.1 12.0 126 50-188 37-166 (322)
30 1m1j_B Fibrinogen beta chain; 22.2 4.6E+02 0.016 27.9 10.4 19 61-79 98-116 (464)
31 2cx7_A Sterol carrier protein 21.9 31 0.0011 29.8 1.4 50 306-368 29-81 (130)
32 3hnw_A Uncharacterized protein 21.6 1.9E+02 0.0064 25.9 6.4 41 57-97 83-123 (138)
33 1cun_A Protein (alpha spectrin 21.6 3.9E+02 0.013 23.0 13.4 128 51-191 35-166 (213)
34 3ol1_A Vimentin; structural ge 20.2 4.2E+02 0.014 22.8 9.5 36 62-104 19-54 (119)
No 1
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=99.94 E-value=3.6e-26 Score=218.75 Aligned_cols=189 Identities=20% Similarity=0.294 Sum_probs=160.9
Q ss_pred ceeecccCCCcceeeecc--ccCCccceeeEEEEec-cCCccccccCCCCCcceeccccccceeEEEeEecCCCCcccce
Q 008936 312 FQIIGEATPGEKLLGCGY--PVRGTTLCMFQWVRHL-QDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGEL 388 (548)
Q Consensus 312 lqI~Gda~pG~~L~acGy--~inGTt~C~FQWVRhl-eDGs~~~IeGA~~p~Y~vTADDvd~llAiec~PmDdr~RkGel 388 (548)
+.+-|.-..|.-|+...- ..---|+|+|||+|++ |+|+++.|.||+.|.|.++++||+.+|++||+| .|++
T Consensus 15 y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~------~G~k 88 (230)
T 4dix_A 15 YEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY------DGHS 88 (230)
T ss_dssp EEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE------TTEE
T ss_pred eeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec------CCcE
Confidence 345566677776654332 2234799999999999 889999999999999999999999999999998 3999
Q ss_pred eeeeecCCCccccCccchHHHHHHhhccceEEEEeeecccccccc-ceEEEEeecceEEEecC-CcceeeeccCCcceeE
Q 008936 389 VRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWE-QATLILRRSIYRIKIDS-TEAIIEERFPKEVSIK 466 (548)
Q Consensus 389 Vk~~ANd~~kI~cdpeMq~~I~~~l~~G~AsF~V~ll~~~~d~wE-pATLvirR~gY~IK~~~-~~~~I~EKfS~~~~Ik 466 (548)
|.+|+| ++|.|+|+|++.|++++.+|.+.|.|.++...-+.|| ++++|+.+-.|+||... ..+++.|+||++.++=
T Consensus 89 ~t~~T~--gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s~sihvl~vgk~RiKL~kg~~t~akE~YSssmQLC 166 (230)
T 4dix_A 89 LSLSTV--GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQLC 166 (230)
T ss_dssp EEEEEE--EEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCCCCEEEEEEESSEEEEEETTEEEEEEECCTTCEEE
T ss_pred EEEEec--CCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCccceEEEEEeccEEEEEecCceEEeeeeecccceee
Confidence 999999 9999999999999999999999999999977788999 99999999999999985 4499999999999886
Q ss_pred ecCCC--c-ce-EEEEecCCCeeeeccCCCCCchhhHHHHHHHHHH
Q 008936 467 VPCGL--S-TQ-FVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGK 508 (548)
Q Consensus 467 IP~G~--~-~q-fvi~~sdG~e~~L~~~~~~~RD~iVLtlR~F~~~ 508 (548)
=..|- . +| ..-.-.-|.+..|-++..|.|..+++.-|.|-.-
T Consensus 167 GvRggg~aA~~AlfWq~rkgls~~L~fEseReRNaAImLARrfA~D 212 (230)
T 4dix_A 167 GVRGGGNAAAQALYWQAKKGVSFVIAFESERERNAAIMLARRFACD 212 (230)
T ss_dssp ECSSCTTSGGGEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eccCCcccccceeeEeecCCcEEEEEeccchhhhhHHHHHHHHhcc
Confidence 66542 1 22 2234467888999999999999999998988765
No 2
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=55.57 E-value=63 Score=30.38 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=40.5
Q ss_pred hhhHHHHhhccHHHHHHHHHHHHHHhhh---------h-----hhhhcchhhhHHhHhHHHHHHhHHhh
Q 008936 51 AMELYSRARMQKEEIHSLRQQIAVACLK---------E-----LQLQNEKYTLERKVSELRMAIDEKQN 105 (548)
Q Consensus 51 ~~~L~~k~r~~eeEI~~LRk~LadasvK---------E-----~QllnEKyvLErRiA~mRmAfDqqQq 105 (548)
-.++=.+.|..-|--..|||.-++++.. | .+|.+.|-.||+-++.|.-+.++...
T Consensus 15 L~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~ 83 (168)
T 3o0z_A 15 LEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR 83 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666667777888888877643 3 45778899999999999998887653
No 3
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=46.29 E-value=27 Score=29.05 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=23.3
Q ss_pred hhhhHHHHhhccHHHHH-------HHHHHHHHHhhh
Q 008936 50 EAMELYSRARMQKEEIH-------SLRQQIAVACLK 78 (548)
Q Consensus 50 ~~~~L~~k~r~~eeEI~-------~LRk~LadasvK 78 (548)
.++||..+++++.+||. +||.+|-.|+.=
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtel 39 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDI 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999996 567777777653
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=46.18 E-value=56 Score=37.64 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=20.2
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhhhhhcc
Q 008936 161 NASAISNTVKHLYDQLQSQIRTSYDRIRD 189 (548)
Q Consensus 161 DAqSIvsnvKvLf~hLq~kL~~~e~klke 189 (548)
+-+..|++++..-+.|+.++..++..+.+
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33477888888888888877777754433
No 5
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=44.60 E-value=34 Score=26.46 Aligned_cols=40 Identities=33% Similarity=0.423 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhhhhhhcchhhhHHhHhHHHHHHhHHhh
Q 008936 66 HSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQN 105 (548)
Q Consensus 66 ~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQq 105 (548)
.-|||+||..--.-+||-.+..-|||-||.||=-+-.-.+
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 4689999988888899999999999999999965544433
No 6
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=43.84 E-value=18 Score=32.66 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=35.8
Q ss_pred HHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHhHhHH
Q 008936 56 SRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSEL 96 (548)
Q Consensus 56 ~k~r~~eeEI~~LRk~LadasvKE~QllnEKyvLErRiA~m 96 (548)
.++++.+.||..|..+|-|+|.+=-+|+.|...|--||+.-
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 46888999999999999999999999999999998888753
No 7
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=40.55 E-value=21 Score=28.67 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=28.0
Q ss_pred ccCCcceeEecCCCcceEEEEecCCCeeeeccCC
Q 008936 458 RFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYN 491 (548)
Q Consensus 458 KfS~~~~IkIP~G~~~qfvi~~sdG~e~~L~~~~ 491 (548)
+|+|+. |+|+-|.+-.|++...|+..|.+...+
T Consensus 24 ~F~P~~-i~v~~G~tV~~~~~n~d~~~H~~~~~~ 56 (100)
T 4hci_A 24 YFNPNV-ITIPINESTTLLLKNKGKSEHTFTIKK 56 (100)
T ss_dssp EEESSE-EEECTTSCEEEEEEECSSSCEEEEEGG
T ss_pred EEeCCE-EEECCCCEEEEEEEcCCCceEEEEEec
Confidence 588875 899999999999999998889887643
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.68 E-value=76 Score=32.39 Aligned_cols=8 Identities=0% Similarity=-0.051 Sum_probs=2.9
Q ss_pred hhhHHhHh
Q 008936 87 YTLERKVS 94 (548)
Q Consensus 87 yvLErRiA 94 (548)
..+++.+.
T Consensus 526 ~~~~~~~~ 533 (597)
T 3oja_B 526 QARRTEAD 533 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 33333333
No 9
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.20 E-value=63 Score=28.01 Aligned_cols=48 Identities=13% Similarity=0.100 Sum_probs=37.5
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHhHhHHHHHHhHHhh
Q 008936 58 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQN 105 (548)
Q Consensus 58 ~r~~eeEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQq 105 (548)
++..++||..||+.|-...+.=--+.+-|..||+.|+++.--|+.+-.
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~ 78 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALK 78 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999887777666788999999999999887765443
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.55 E-value=8.8 Score=39.25 Aligned_cols=27 Identities=7% Similarity=0.179 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhcccc
Q 008936 165 ISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (548)
Q Consensus 165 IvsnvKvLf~hLq~kL~~~e~klke~q 191 (548)
.....|...+.|+.++..+..++|+..
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555
No 11
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=35.04 E-value=59 Score=30.54 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=13.8
Q ss_pred chhhhHHhHhHHHHHHhHHhhHHHHHHHHHH
Q 008936 85 EKYTLERKVSELRMAIDEKQNEAITSALNEL 115 (548)
Q Consensus 85 EKyvLErRiA~mRmAfDqqQqdlVdAASKaL 115 (548)
||..++..|.+++-+.|.+..+.+.++.++|
T Consensus 173 ~k~~i~~~l~~~~~~L~~~~~~~i~~~~~~L 203 (219)
T 4e81_A 173 DKTAIESALTALETALKGEDKAAIEAKMQEL 203 (219)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444444444444444444334444444444
No 12
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=33.98 E-value=34 Score=25.08 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHhHhH
Q 008936 62 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSE 95 (548)
Q Consensus 62 eeEI~~LRk~LadasvKE~QllnEKyvLErRiA~ 95 (548)
+|++..|-.|||.|.-|--.|-.+...||.+|..
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999988888888899988753
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=33.96 E-value=1.2e+02 Score=35.04 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=8.6
Q ss_pred HhhccHHHHHHHHHHHHH
Q 008936 57 RARMQKEEIHSLRQQIAV 74 (548)
Q Consensus 57 k~r~~eeEI~~LRk~Lad 74 (548)
++++.++||..|++.+..
T Consensus 985 ~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555554443
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=33.72 E-value=87 Score=35.96 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 008936 62 KEEIHSLRQQIAVA 75 (548)
Q Consensus 62 eeEI~~LRk~Lada 75 (548)
++|+..|+.+|...
T Consensus 863 ~~eL~el~~~L~~l 876 (1184)
T 1i84_S 863 DEELQRTKERQQKA 876 (1184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 15
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.57 E-value=47 Score=28.96 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=33.1
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHhHhHHHHHHhHHhhH
Q 008936 58 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNE 106 (548)
Q Consensus 58 ~r~~eeEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqd 106 (548)
++..++||..||+.|-...+.=-.+.+-|..||+.|+++.--|+.+-.+
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~ 81 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ 81 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999988877765667788999999999998877765443
No 16
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=31.48 E-value=25 Score=25.91 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=18.4
Q ss_pred HhhccHHHHHHHHHHHHHHhh
Q 008936 57 RARMQKEEIHSLRQQIAVACL 77 (548)
Q Consensus 57 k~r~~eeEI~~LRk~Ladasv 77 (548)
-+|.||+-...-|++|+++-.
T Consensus 11 DIr~QE~rV~~aR~rL~eaL~ 31 (36)
T 2l2l_B 11 DIRKQEERVQQVRKKLEEALM 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999854
No 17
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=30.30 E-value=1.5e+02 Score=25.30 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhhhh--------hhhcchhhhHHhHhHHHHHH-----hHHhh-HHHHHHHHH-----------HHHh
Q 008936 64 EIHSLRQQIAVACLKEL--------QLQNEKYTLERKVSELRMAI-----DEKQN-EAITSALNE-----------LARR 118 (548)
Q Consensus 64 EI~~LRk~LadasvKE~--------QllnEKyvLErRiA~mRmAf-----DqqQq-dlVdAASKa-----------LSyR 118 (548)
++..||++|.+.--+=+ .|++|.-.|=+.||....+- |.... .+++...+. -..=
T Consensus 4 ~L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~pi~dp~RE~~vl~~~~~~~~~~~l~~~~i~~if 83 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNVDENIGIKIF 83 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHTSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 47788999888877777 88899999999999888653 43333 233332221 1234
Q ss_pred hhhHhhhhhhhhhhhhhhhh
Q 008936 119 KGVLEENLKLAHDLKVAEDE 138 (548)
Q Consensus 119 QdiiEENiRLtyalq~aeQE 138 (548)
+.|+++++++-+.+-...||
T Consensus 84 ~~ii~~s~~~Q~~~l~~~~~ 103 (104)
T 2gtv_X 84 QRLIEHNKALQKQYLEETLE 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 56777777777766655554
No 18
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=30.24 E-value=3.3e+02 Score=25.17 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=73.7
Q ss_pred hhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcch----hhhHHhHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhh
Q 008936 50 EAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEK----YTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEEN 125 (548)
Q Consensus 50 ~~~~L~~k~r~~eeEI~~LRk~LadasvKE~QllnEK----yvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEEN 125 (548)
+++.+..|-+.-+.||...+..+....-.-.+|+.++ -.+.+|+..|+-.|+ .|.+. ..-|+..||+.
T Consensus 38 ~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~----~L~~~----~~~R~~~Le~~ 109 (326)
T 3kbt_A 38 GAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYA----GLKDV----AEERKRKLENM 109 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHH
Confidence 4567777777788888777666655443333344433 356777777766554 33333 34588999999
Q ss_pred hhhhhhhhhhhhhhHHHHHHhHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhh-hhhhcc
Q 008936 126 LKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTS-YDRIRD 189 (548)
Q Consensus 126 iRLtyalq~aeQERstFvSSLLpLLaEY~LqP~V~DAqSIvsnvKvLf~hLq~kL~~~-e~klke 189 (548)
++| |.+...=++--..+..-...|+.-+ +.+--.-|..+..-|+.++..+..+ +.++..
T Consensus 110 l~l-~~f~~~~~~l~~Wl~~~e~~l~~~~----~g~d~~~v~~l~~~~~~f~~el~~~~~~~v~~ 169 (326)
T 3kbt_A 110 YHL-FQLKRETDDLEQWISEKELVASSPE----MGQDFDHVTLLRDKFRDFARETGAIGQERVDN 169 (326)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHCCC----CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHcccc----CCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 887 5544444455566666666665322 2222233344444567777776652 444443
No 19
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=28.17 E-value=4.1e+02 Score=25.51 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=42.2
Q ss_pred HHHHHHhHHHhhhcC--C--CCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCC
Q 008936 140 YFFMSSMLGLLADYG--L--WPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGV 210 (548)
Q Consensus 140 stFvSSLLpLLaEY~--L--qP~V~DAqSIvsnvKvLf~hLq~kL~~~e~klke~q~~pg~~~~~~~~~~~~~q~ 210 (548)
.-|+..|||.|--+. | -|.-.+..++..+|+-++++|..=|. ..-|+.+. ..| . .++|+.|+-
T Consensus 109 e~~~~~LLpVlDnlerAl~~~~~~~~~~~l~eGvemi~k~l~~~L~--k~Gv~~I~-~~G----e-~FDP~~HeA 175 (213)
T 4ani_A 109 QSLASDLLPVLDNFERALKIETDNEQAKSILQGMEMVYRSLVDALK--KEGVEAIE-AVG----K-PFDPYLHQA 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSCCSTHHHHHHHHHHHHHHHHHHHH--HTTEECCC-CSS----S-CCCTTTEEE
T ss_pred HHHHHHHhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH--HCCCEEeC-CCC----C-CCCHHHcee
Confidence 468999999987762 2 24445667899999999999988874 33444443 112 2 366777753
No 20
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.20 E-value=83 Score=25.85 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=24.6
Q ss_pred hhHHhHhH--HHHHHhHHhhHHHHHHHHHHHHhhhhHhh
Q 008936 88 TLERKVSE--LRMAIDEKQNEAITSALNELARRKGVLEE 124 (548)
Q Consensus 88 vLErRiA~--mRmAfDqqQqdlVdAASKaLSyRQdiiEE 124 (548)
.||.||.+ +|+|| |.+.|+.-++++..-|.-|+.
T Consensus 11 ~le~Ri~~LE~klAf---qE~tIeeLn~~v~~Qq~~Id~ 46 (78)
T 3efg_A 11 ELEARLVELETRLSF---QEQALTELSEALADARLTGAR 46 (78)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 35666664 46776 788888888888877777664
No 21
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=27.15 E-value=1.3e+02 Score=26.55 Aligned_cols=61 Identities=21% Similarity=0.173 Sum_probs=36.4
Q ss_pred HHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHhHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhh
Q 008936 56 SRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLK 133 (548)
Q Consensus 56 ~k~r~~eeEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiRLtyalq 133 (548)
.+.-+.||...+|++.+-+-| |-+..++.++|-.|.++.. .--+|.+|-++|+| ||+.||.
T Consensus 37 D~LEe~eE~~aql~Re~~eK~--------------re~e~~Kr~~~~L~~~~~~-lk~~L~qRD~LI~E--~~~~~~~ 97 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKN--------------KEFEREKHAHSILQFQFAE-VKEALKQREEMLEP--KLAAALE 97 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHHHHHTTTSCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHH
Confidence 455677788888887776654 2255666777776666543 45589999999998 5666653
No 22
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=26.86 E-value=4.9e+02 Score=28.38 Aligned_cols=117 Identities=16% Similarity=0.154 Sum_probs=71.5
Q ss_pred CCCccccchhhhhHHHHhhccHHHHH--HHHHHHHHHhhh-hhhhhcchhhhHHhHhHHHHHHhH---HhhHHHHHHHHH
Q 008936 41 DNFISFQDREAMELYSRARMQKEEIH--SLRQQIAVACLK-ELQLQNEKYTLERKVSELRMAIDE---KQNEAITSALNE 114 (548)
Q Consensus 41 ~~~~~~~d~~~~~L~~k~r~~eeEI~--~LRk~LadasvK-E~QllnEKyvLErRiA~mRmAfDq---qQqdlVdAASKa 114 (548)
+...-=-+|-++.++.|+++-|+|.. ..|-+..+.-.+ ...-|.+-| +++.-.--.|+ .|-+.++.|.|+
T Consensus 82 ~~~pDPLsPgE~~~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~----~~~~~~~~~e~~e~~q~~~LekAl~s 157 (526)
T 3iyk_A 82 EEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVY----NFMNGEANAEIEDEKQFDILNKAVTS 157 (526)
T ss_pred CCCCCCCCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 33333457889999999999888875 444444433332 222222222 22221122222 477888888886
Q ss_pred HHHhhhhHhhhh---hhhhhhhhhhhhhHHHHHHhHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHh
Q 008936 115 LARRKGVLEENL---KLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRT 182 (548)
Q Consensus 115 LSyRQdiiEENi---RLtyalq~aeQERstFvSSLLpLLaEY~LqP~V~DAqSIvsnvKvLf~hLq~kL~~ 182 (548)
+. +=+-+||- +|+-|||....+|| .|=..+|+..+.-|+.|++-+..
T Consensus 158 ~~--~i~~~e~~~l~~L~~AL~kE~~~Rt-------------------~dE~~mi~~yr~k~~aL~~aIe~ 207 (526)
T 3iyk_A 158 YN--KILTEEDLQMRRLATALQKEIGERT-------------------HAETVMVKEYRDKIDALKNAIEV 207 (526)
T ss_pred HH--HHHHHHHhHHHHHHHHHHHHHHhhc-------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 44445554 57889999999997 36667777777777777766543
No 23
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=26.66 E-value=56 Score=30.07 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=38.7
Q ss_pred HhHHHHHHh------HHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHH
Q 008936 93 VSELRMAID------EKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMS 144 (548)
Q Consensus 93 iA~mRmAfD------qqQqdlVdAASKaLSyRQdiiEENiRLtyalq~aeQERstFvS 144 (548)
+..+|-..| ++|+.+|++|-.+.....+++++=.+--..++..+-+|+.|+-
T Consensus 179 ~~~~~~~ld~~~~~~~~~~~ii~~a~~~~~l~~~~f~~l~~~~~~~~~~~~~~~~~~~ 236 (239)
T 3dde_A 179 AEEVNEMLHEVCKTQEDVDSVVAVMENSLVLTARILDDVWKEYQLFQSGASDRYAFLR 236 (239)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCCCC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHh
Confidence 344555554 5689999999999999999988866554444999999999873
No 24
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=24.90 E-value=1.9e+02 Score=26.35 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=54.1
Q ss_pred CCChhhhhhcccccccccccccCCCCccccchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHhHhHHH
Q 008936 18 AKNSDFVNRHKIETHLAPTKQKEDNFISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELR 97 (548)
Q Consensus 18 ~~~s~~l~r~~~~~~l~~~~~~~~~~~~~~d~~~~~L~~k~r~~eeEI~~LRk~LadasvKE~QllnEKyvLErRiA~mR 97 (548)
+++||+.+|.+|.. |-+..+...-...+.|++.-+- -.++|..--..|++|.=.=.+=+.+. +++..|=
T Consensus 37 sassDa~vrq~Ia~-LP~eVsd~s~l~klkDk~~~e~------l~~~veeA~~~L~eYn~rL~~E~~dR----~~L~~~L 105 (152)
T 4fla_A 37 AASGDATVRQKIAS-LPQEVQDVSLLEKITDKEAAER------LSKTVDEACLLLAEYNGRLAAELEDR----RQLARML 105 (152)
T ss_dssp HHHHHHHHHHHHHT-SCGGGTCGGGGGGCCSHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred cccchHHHHHHHHc-CCccccCHHHHHHcccHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 57888999988665 3333333333344444432211 12344444455555543311112222 2344555
Q ss_pred HHHhHHhhHHHHHHHHHH-HHhhhhHhhhhhhhhhhhhhhhhhHHHHHHh
Q 008936 98 MAIDEKQNEAITSALNEL-ARRKGVLEENLKLAHDLKVAEDERYFFMSSM 146 (548)
Q Consensus 98 mAfDqqQqdlVdAASKaL-SyRQdiiEENiRLtyalq~aeQERstFvSSL 146 (548)
..|.+.|++.+..|=|-| .||+- .--++....|.---++||
T Consensus 106 ~~~~~~~~~~l~e~e~~leeyK~K--------l~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 106 VEYTQNQKDVLSEKEKKLEEYKQK--------LARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhcC
Confidence 577777777776666555 44443 223444445555555554
No 25
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=24.87 E-value=53 Score=30.25 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=37.8
Q ss_pred hhhhhhhhHHHHHHhHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 008936 132 LKVAEDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (548)
Q Consensus 132 lq~aeQERstFvSSLLpLLaEY-~LqP~V~DAqSIvsnvKvLf~hLq~kL~~~e~klke~q 191 (548)
++.||++.+.-++.|+-+...| +|... .-|.+||.+|..+|.+|.-..
T Consensus 75 ~~~ae~~Ls~aL~~L~av~E~YP~LKan------------~~f~~Lq~eL~~~EnrIa~AR 123 (171)
T 2etd_A 75 SAQADAELSSALSRLLAIAENYPNLXAD------------ANFRQLMDELAGTENRIAVAR 123 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHC------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccC------------hHHHHHHHHHHHHHHHHHHHH
Confidence 4678899988888888877777 55443 358999999999999986655
No 26
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=24.69 E-value=65 Score=26.47 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=32.5
Q ss_pred CCcceEEEEecCCCeeeeccCCCCCchhhHHHHHHHHHH
Q 008936 470 GLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGK 508 (548)
Q Consensus 470 G~~~qfvi~~sdG~e~~L~~~~~~~RD~iVLtlR~F~~~ 508 (548)
....-|.|+..+|..+.|.+++...||.=|-.|+.-+..
T Consensus 87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~ 125 (128)
T 2rlo_A 87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILA 125 (128)
T ss_dssp CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999999999988888766554
No 27
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=24.55 E-value=80 Score=28.74 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHhHh
Q 008936 60 MQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVS 94 (548)
Q Consensus 60 ~~eeEI~~LRk~LadasvKE~QllnEKyvLErRiA 94 (548)
|-++||..|+.+-..| .+.-+.||--|+||||+
T Consensus 36 EL~~EI~~L~EKaRKA--Eq~Gi~NE~aV~erKi~ 68 (128)
T 1sf9_A 36 ELNTEIALLSEKARKA--EQHGIINELAVLERKIT 68 (128)
T ss_dssp HHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHcCCccHHHHHHHHHH
Confidence 3456677776665544 45679999999999985
No 28
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=23.36 E-value=83 Score=28.47 Aligned_cols=36 Identities=44% Similarity=0.523 Sum_probs=25.7
Q ss_pred HHHHHHH-------HHHHHHHhhh-----hhhhhcchhhhHHhHhHHH
Q 008936 62 KEEIHSL-------RQQIAVACLK-----ELQLQNEKYTLERKVSELR 97 (548)
Q Consensus 62 eeEI~~L-------Rk~LadasvK-----E~QllnEKyvLErRiA~mR 97 (548)
+.||.+| |.+||.+... =+|+..|+..|+++|+.||
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566655 4455554432 3688999999999999998
No 29
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=22.20 E-value=4.6e+02 Score=24.09 Aligned_cols=126 Identities=10% Similarity=0.143 Sum_probs=68.6
Q ss_pred hhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchh----hhHHhHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhh
Q 008936 50 EAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKY----TLERKVSELRMAIDEKQNEAITSALNELARRKGVLEEN 125 (548)
Q Consensus 50 ~~~~L~~k~r~~eeEI~~LRk~LadasvKE~QllnEKy----vLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEEN 125 (548)
+.+.|..+-+.-+.+|.....++....-.-.+|..+.+ .++.|+..|.-.|+. |.+. +..|+..||+.
T Consensus 37 ~v~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~~~~~~~~~~i~~~~~~l~~~w~~----L~~~----~~~R~~~Le~~ 108 (322)
T 1u4q_A 37 SVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQR----IKSM----AAARRAKLNES 108 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCSSCTHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHH
Confidence 34555666666677777776666554444444554433 344555554444433 3332 45788999998
Q ss_pred hhhhhhhhhhhhhhHHHHHHhHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhc
Q 008936 126 LKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIR 188 (548)
Q Consensus 126 iRLtyalq~aeQERstFvSSLLpLLaEY~LqP~V~DAqSIvsnvKvLf~hLq~kL~~~e~klk 188 (548)
.+|. .....-+|-...+....++|+.-++- .|..++ .++..-++.|+.+|...+..+.
T Consensus 109 ~~l~-~f~~~~~~~~~Wl~e~e~~~~~~~~g---~dl~~v-~~ll~~h~~l~~el~~~~~~i~ 166 (322)
T 1u4q_A 109 HRLH-QFFRDMDDEESWIKEKKLLVSSEDYG---RDLTGV-QNLRKKHKRLEAELAAHEPAIQ 166 (322)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHTCCCCC---SSHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhccCCCcC---CCHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 8853 33333345566677778888764442 233222 2222335556666655444443
No 30
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=22.20 E-value=4.6e+02 Score=27.92 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=14.0
Q ss_pred cHHHHHHHHHHHHHHhhhh
Q 008936 61 QKEEIHSLRQQIAVACLKE 79 (548)
Q Consensus 61 ~eeEI~~LRk~LadasvKE 79 (548)
-+..|.+|+..|...+-+.
T Consensus 98 V~~~LqeLe~~l~~lsn~T 116 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTS 116 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhh
Confidence 4567889999998876543
No 31
>2cx7_A Sterol carrier protein 2; sterol transfer, SCP-2, RSGI, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB: 1wfr_A
Probab=21.89 E-value=31 Score=29.79 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=31.9
Q ss_pred CCCcccceeecccCCCcceeeeccccCCccceeeEEEEeccCCccccccCC--CC-Ccceeccccc
Q 008936 306 GPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGA--TN-PEYVVTADDV 368 (548)
Q Consensus 306 lPgIeglqI~Gda~pG~~L~acGy~inGTt~C~FQWVRhleDGs~~~IeGA--~~-p~Y~vTADDv 368 (548)
+-|+-.+.|+|++ .||++- + -.|.=.|++|.+.+.+.. .. |+|++|+++-
T Consensus 29 ~~~~~~~~i~~~p-------~~g~~~--~----~~~~l~l~~G~~~~~~~~~~~~~~d~tl~~~~e 81 (130)
T 2cx7_A 29 WEGSLALAVRPDP-------KAGFPK--G----VAVVLDLWHGACRGAKAVEGEAEADFVIEADLA 81 (130)
T ss_dssp CEEEEEEEECCBG-------GGTBTT--C----EEEEEEEETTEEEEEEEEESCCCCSEEEEECHH
T ss_pred CcceEEEEEecCc-------ccCCCC--C----ceEEEEEeCCEEEEccccCCCCCCCEEEEEcHH
Confidence 3456677888876 125432 1 248888999988655532 23 8888887653
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.57 E-value=1.9e+02 Score=25.88 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=22.3
Q ss_pred HhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHhHhHHH
Q 008936 57 RARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELR 97 (548)
Q Consensus 57 k~r~~eeEI~~LRk~LadasvKE~QllnEKyvLErRiA~mR 97 (548)
...+.++||..|+..|..+.+|--.+..|...|.+++..|+
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666665555555555555544443
No 33
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=21.56 E-value=3.9e+02 Score=23.03 Aligned_cols=128 Identities=15% Similarity=0.213 Sum_probs=72.8
Q ss_pred hhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchh----hhHHhHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhh
Q 008936 51 AMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKY----TLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENL 126 (548)
Q Consensus 51 ~~~L~~k~r~~eeEI~~LRk~LadasvKE~QllnEKy----vLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENi 126 (548)
.+.|..+-+.-+.||.....++....-.=-+|+.+.+ .+..|+..|+-.+++-. + ....|+..||+.+
T Consensus 35 v~~ll~kh~~~~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~i~~~~~~l~~~w~~L~----~----~~~~R~~~Le~~~ 106 (213)
T 1cun_A 35 VQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELK----Q----LAAARGQRLEESL 106 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHH
Confidence 3445555566667777655555433333233444332 45666777665554433 2 3357999999998
Q ss_pred hhhhhhhhhhhhhHHHHHHhHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 008936 127 KLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (548)
Q Consensus 127 RLtyalq~aeQERstFvSSLLpLLaEY~LqP~V~DAqSIvsnvKvLf~hLq~kL~~~e~klke~q 191 (548)
.+ +.....=+|-...++--.++|+.-++ ..|-.++ ..+-.=++.++..+...++++..+.
T Consensus 107 ~~-~~f~~~~~e~~~Wl~~~e~~l~~~~~---g~~~~~v-~~ll~~h~~~~~el~~~~~~i~~l~ 166 (213)
T 1cun_A 107 EY-QQFVANVEEEEAWINEKMTLVASEDY---GDTLAAI-QGLLKKHEAFETDFTVHKDRVNDVC 166 (213)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHTCCCC---CSSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHhhCCCC---CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 55555555666777778888864322 2233322 2233335666777776666665554
No 34
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.18 E-value=4.2e+02 Score=22.81 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHhHhHHHHHHhHHh
Q 008936 62 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQ 104 (548)
Q Consensus 62 eeEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQ 104 (548)
|.+|..||++|.+.+.-=++ |+-.+..||.+.|.-.
T Consensus 19 e~~I~~LR~qid~~~~e~a~-------l~leldn~~~~~edfk 54 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKAR-------VEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 67899999999888765444 4444555555554443
Done!