Query 008936
Match_columns 548
No_of_seqs 46 out of 48
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 15:06:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008936.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008936hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yzma1 a.2.19.1 (A:456-501) F 74.2 2.2 0.00016 31.1 4.7 41 62-104 5-45 (46)
2 d2rnrb1 b.55.1.9 (B:1-108) TFI 35.0 69 0.005 25.9 7.9 63 433-495 20-85 (108)
3 d1r0ah1 b.1.1.1 (H:1-123) Immu 25.8 52 0.0038 27.1 5.6 57 320-377 14-85 (123)
4 d1rz7h1 b.1.1.1 (H:1-113) Immu 25.4 45 0.0033 27.4 5.2 55 319-377 13-84 (119)
5 d2agjh1 b.1.1.1 (H:1-120) Immu 25.1 46 0.0034 27.1 5.2 49 327-376 25-84 (120)
6 d1nuwa_ e.7.1.1 (A:) Fructose- 24.3 19 0.0014 34.2 2.8 76 319-412 147-223 (328)
7 d1lmka1 b.1.1.1 (A:2-127) Immu 23.9 51 0.0037 27.4 5.3 55 320-377 13-83 (126)
8 d1bz7b1 b.1.1.1 (B:1-122) Immu 22.5 57 0.0042 26.8 5.3 54 319-375 13-82 (122)
9 d1nbqa2 b.1.1.4 (A:130-233) Ju 22.1 1.2E+02 0.0089 21.4 6.6 37 307-343 3-39 (104)
10 d1nkpa_ a.38.1.1 (A:) Myc prot 21.8 37 0.0027 25.6 3.7 38 60-97 49-86 (88)
11 d1d9qa_ e.7.1.1 (A:) Fructose- 21.7 36 0.0026 32.1 4.3 79 318-414 161-240 (340)
12 d1u00a1 a.8.4.1 (A:504-615) Ch 21.5 76 0.0055 24.8 5.7 66 47-116 19-86 (112)
13 d1sf9a_ b.34.15.1 (A:) Hypothe 21.2 49 0.0036 27.7 4.5 31 62-94 28-58 (118)
No 1
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.16 E-value=2.2 Score=31.10 Aligned_cols=41 Identities=27% Similarity=0.342 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHhHhHHHHHHhHHh
Q 008936 62 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQ 104 (548)
Q Consensus 62 eeEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQ 104 (548)
-|.|..+|..|-.| |++.=+.|-.+||+-+.+|.-.|++||
T Consensus 5 lqQi~~ik~yI~QA--k~a~R~dEV~~Le~NLreLq~e~~~qq 45 (46)
T d1yzma1 5 LQQIHNITSFIRQA--KAAGRMDEVRTLQENLRQLQDEYDQQQ 45 (46)
T ss_dssp HHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHhcchHHHHHHHHHHHHHHHHHHhhc
Confidence 46788999999887 788899999999999999999999998
No 2
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.99 E-value=69 Score=25.91 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=47.5
Q ss_pred cceEEEEeecceEEEecC-CcceeeeccCCcceeEecCCC--cceEEEEecCCCeeeeccCCCCCc
Q 008936 433 EQATLILRRSIYRIKIDS-TEAIIEERFPKEVSIKVPCGL--STQFVLTFSDGSSYPFSTYNVRMR 495 (548)
Q Consensus 433 EpATLvirR~gY~IK~~~-~~~~I~EKfS~~~~IkIP~G~--~~qfvi~~sdG~e~~L~~~~~~~R 495 (548)
-++||.|.-.+..-+.++ +.+.|.-+|+-=.+.+|..+. --++-|+..+|..|.|.|.|...+
T Consensus 20 ~~GtL~l~~d~l~W~p~~~~~~~v~~~~~~I~~~q~Spe~s~Kv~Lkiv~~~~~s~~F~Ftn~~~~ 85 (108)
T d2rnrb1 20 QDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNESTA 85 (108)
T ss_dssp CEEEEEECSSEEEEEESSCSSCSEEEETTTEEEEEECCTTCSSEEEEEEETTSCEEEEEECCTTTH
T ss_pred CCcEEEEEcCeEEEEcCCCCCceEEEEhhhhhceecCCCCcccceeEEEEeCCCeEEEEECChHHH
Confidence 568888888887777776 557788888877777775433 346777889999999999886543
No 3
>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}
Probab=25.76 E-value=52 Score=27.07 Aligned_cols=57 Identities=11% Similarity=0.282 Sum_probs=32.2
Q ss_pred CCcceee----eccccCCccceeeEEEEeccCCccccc---cCCCCC--------cceeccccccceeEEEeE
Q 008936 320 PGEKLLG----CGYPVRGTTLCMFQWVRHLQDGTRHYI---EGATNP--------EYVVTADDVDKLIAVECI 377 (548)
Q Consensus 320 pG~~L~a----cGy~inGTt~C~FQWVRhleDGs~~~I---eGA~~p--------~Y~vTADDvd~llAiec~ 377 (548)
||..|+- .||++..+.-|+ .|+|+.-....++| -....+ .+.|+.|.-.+-+.++..
T Consensus 14 pg~sv~LsC~~SG~s~s~~~y~~-~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~ 85 (123)
T d1r0ah1 14 PSQPFRLTCTFSGFSLSTSGIGV-TWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMM 85 (123)
T ss_dssp TTCCEEEEEEEESSCTTSTTEEE-EEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEEC
T ss_pred CCCCeEEEEEEcCCccCCCCCee-eccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEccee
Confidence 6665543 378885444454 69999876655543 222222 345666666655555443
No 4
>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}
Probab=25.43 E-value=45 Score=27.39 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=31.3
Q ss_pred CCCcce----eeeccccCCccceeeEEEEeccC-------------CccccccCCCCCcceeccccccceeEEEeE
Q 008936 319 TPGEKL----LGCGYPVRGTTLCMFQWVRHLQD-------------GTRHYIEGATNPEYVVTADDVDKLIAVECI 377 (548)
Q Consensus 319 ~pG~~L----~acGy~inGTt~C~FQWVRhleD-------------Gs~~~IeGA~~p~Y~vTADDvd~llAiec~ 377 (548)
-||..| .+.||+++ +.-+.|||+.-- |+.+|-+.. +=.++++.|.-.+-+-++..
T Consensus 13 kpg~sl~LsC~~SG~~~~---~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~-kgRftiSrD~s~nt~yLqm~ 84 (119)
T d1rz7h1 13 KPGATVKISCKASGYTFS---DFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKF-RGRVTITADTSTDTGYLELS 84 (119)
T ss_dssp CTTCCEEEEEEEESSCGG---GSCEEEEEECTTSCEEEEEEEETTTTEEEECTTT-TTTEEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEEEcCCCCc---CCceEccccCCccceeeeeecCCcccccccccce-eeeEEEecccCceEEEeeee
Confidence 466655 46778873 345689999632 222222221 22567777777766655543
No 5
>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}
Probab=25.13 E-value=46 Score=27.08 Aligned_cols=49 Identities=16% Similarity=0.344 Sum_probs=28.6
Q ss_pred eccccCCccceeeEEEEeccCCcccccc-----CCC------CCcceeccccccceeEEEe
Q 008936 327 CGYPVRGTTLCMFQWVRHLQDGTRHYIE-----GAT------NPEYVVTADDVDKLIAVEC 376 (548)
Q Consensus 327 cGy~inGTt~C~FQWVRhleDGs~~~Ie-----GA~------~p~Y~vTADDvd~llAiec 376 (548)
.||++..+.-+++ |+|+.-....++|- |.+ +-.+.++.|.=.+.+.++.
T Consensus 25 SG~s~ss~~~~~~-WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i 84 (120)
T d2agjh1 25 SGFSLTTTGEGVG-WIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTL 84 (120)
T ss_dssp ESCCTTSSSCEEE-EEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEE
T ss_pred cccCccCCCCeEe-eccccccccceeeecccCCcccccchhhccccceecccccceeeeeE
Confidence 4788876666655 99997765544332 211 2245677776666555543
No 6
>d1nuwa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=24.27 E-value=19 Score=34.20 Aligned_cols=76 Identities=17% Similarity=0.381 Sum_probs=53.4
Q ss_pred CCCcceeeeccccCCccceeeEEEEeccCCccccccCCCCCcceeccccccceeEEEeEecCCCCcccceeeeee-cCCC
Q 008936 319 TPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQN 397 (548)
Q Consensus 319 ~pG~~L~acGy~inGTt~C~FQWVRhleDGs~~~IeGA~~p~Y~vTADDvd~llAiec~PmDdr~RkGelVk~~A-Nd~~ 397 (548)
.||+++.|.||.+=|.+.-.+ -.+.+|..-|.=....-+|++|-.++ .+.++ -+.|+ |++|
T Consensus 147 q~G~~qvAAGY~lYGpsT~lv---~t~g~gv~~FtlD~~~geF~l~~~~i---------~ip~~------~~~ysin~~n 208 (328)
T d1nuwa_ 147 QPGRNLVAAGYALYGSATMLV---LAMVNGVNCFMLDPAIGEFILVDRDV---------KIKKK------GSIYSINEGY 208 (328)
T ss_dssp CCGGGCSEEEEEEESSSEEEE---EEETTEEEEEEEETTTTEEEEEECSC---------CCCSS------CSEEECCGGG
T ss_pred CCChhheeeeeEEEecceEEE---EEECCcEeEEEEcCCCceeeeccccc---------ccCCC------cceeeccccc
Confidence 589999999999988755443 35566766555555555566665442 12233 36788 9999
Q ss_pred ccccCccchHHHHHH
Q 008936 398 KIKCDLGMQSEIDAY 412 (548)
Q Consensus 398 kI~cdpeMq~~I~~~ 412 (548)
.-.++|.||+-|+..
T Consensus 209 ~~~w~~~~~~yi~~~ 223 (328)
T d1nuwa_ 209 AKEFDPAITEYIQRK 223 (328)
T ss_dssp GGGCCHHHHHHHHHH
T ss_pred hhhhCHHHHHHHHHh
Confidence 999999999999864
No 7
>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}
Probab=23.85 E-value=51 Score=27.37 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=30.0
Q ss_pred CCcce----eeeccccCCccceeeEEEEeccCCcccc---cc-CCCCC--------cceeccccccceeEEEeE
Q 008936 320 PGEKL----LGCGYPVRGTTLCMFQWVRHLQDGTRHY---IE-GATNP--------EYVVTADDVDKLIAVECI 377 (548)
Q Consensus 320 pG~~L----~acGy~inGTt~C~FQWVRhleDGs~~~---Ie-GA~~p--------~Y~vTADDvd~llAiec~ 377 (548)
||..| ++.||+++ .+-+.|||+.--.-.+. |- +...+ .+++++|+-.+-+-++..
T Consensus 13 Pg~sl~LsC~~SG~~~~---~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~ 83 (126)
T d1lmka1 13 PGRSLKISCKTTGYIFS---NYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLS 83 (126)
T ss_dssp TTCCEEEEEEEESSCTT---TEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred CCCCeEEEEEEccCCCC---CCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeec
Confidence 55554 45688885 46689999764333222 11 11222 345666666665555543
No 8
>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}
Probab=22.53 E-value=57 Score=26.79 Aligned_cols=54 Identities=15% Similarity=0.441 Sum_probs=30.4
Q ss_pred CCCccee----eeccccCCccceeeEEEEeccCCccccc----cCCCCCc--------ceeccccccceeEEE
Q 008936 319 TPGEKLL----GCGYPVRGTTLCMFQWVRHLQDGTRHYI----EGATNPE--------YVVTADDVDKLIAVE 375 (548)
Q Consensus 319 ~pG~~L~----acGy~inGTt~C~FQWVRhleDGs~~~I----eGA~~p~--------Y~vTADDvd~llAie 375 (548)
-||.-|+ +.||+++ .+.+.|||+.--.-.+.| .+...++ ++++.|+-.+-+-++
T Consensus 13 kPg~sl~LsC~~SG~s~s---~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~ 82 (122)
T d1bz7b1 13 QPGGSRKLSCAASGFTFS---NFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQ 82 (122)
T ss_dssp CTTCCEEEEEEEESSCGG---GSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred CCCCCeEEEEEEcCCCCc---CCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEee
Confidence 3666554 6788884 577899998644333322 1222333 466666655555544
No 9
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.05 E-value=1.2e+02 Score=21.39 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=27.0
Q ss_pred CCcccceeecccCCCcceeeeccccCCccceeeEEEE
Q 008936 307 PGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVR 343 (548)
Q Consensus 307 PgIeglqI~Gda~pG~~L~acGy~inGTt~C~FQWVR 343 (548)
|-|.-+.+......|..++--|....|...-.|.|.+
T Consensus 3 P~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~ 39 (104)
T d1nbqa2 3 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFK 39 (104)
T ss_dssp CCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEE
T ss_pred CcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEE
Confidence 3344445555667788888877777888888999986
No 10
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.83 E-value=37 Score=25.56 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=25.4
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHhHhHHH
Q 008936 60 MQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELR 97 (548)
Q Consensus 60 ~~eeEI~~LRk~LadasvKE~QllnEKyvLErRiA~mR 97 (548)
.--+-|..|.+.+.....+-.++..+...|.++++.|+
T Consensus 49 ~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~ 86 (88)
T d1nkpa_ 49 KATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33456778888777766666666666666777776654
No 11
>d1d9qa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=21.65 E-value=36 Score=32.09 Aligned_cols=79 Identities=20% Similarity=0.364 Sum_probs=54.8
Q ss_pred cCCCcceeeeccccCCccceeeEEEEeccCCccccccCCCCCcceeccccccceeEEEeEecCCCCcccceeeeee-cCC
Q 008936 318 ATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQ 396 (548)
Q Consensus 318 a~pG~~L~acGy~inGTt~C~FQWVRhleDGs~~~IeGA~~p~Y~vTADDvd~llAiec~PmDdr~RkGelVk~~A-Nd~ 396 (548)
--||.++.|.||.+=|.+... |-.+.+|..-|.=....-+|++|.+++- +.++ =++|+ |++
T Consensus 161 lqpG~~~vaAGY~lYG~sT~l---v~t~g~gv~~FtlD~~~gef~lt~~~i~---------ip~~------~~~ys~n~~ 222 (340)
T d1d9qa_ 161 CQPGSNLLAAGYCMYSSSVIF---VLTIGKGVFVFTLDPLYGEFVLTQENLQ---------IPKS------GKIYSFNEG 222 (340)
T ss_dssp CCTTTSEEEEEEEEESSSEEE---EEESSSCCEEEEEETTTTEEEEEESSCC---------CCSC------CSEEECCGG
T ss_pred cCCccceeEEEEEEECCceEE---EEEECCCEEEEEEcCCCCeEEEeccccc---------cCCC------cccccCCcc
Confidence 468999999999998876654 3355556555544444445666665542 2233 37888 889
Q ss_pred CccccCccchHHHHHHhh
Q 008936 397 NKIKCDLGMQSEIDAYIS 414 (548)
Q Consensus 397 ~kI~cdpeMq~~I~~~l~ 414 (548)
|.=.++|.||.-|+....
T Consensus 223 n~~~w~~~~~~yi~~~~~ 240 (340)
T d1d9qa_ 223 NYKLWDENLKKYIDDLKE 240 (340)
T ss_dssp GGGGSCHHHHHHHHHHTS
T ss_pred chhhhhHHHHHHHHHHhc
Confidence 999999999999988754
No 12
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=21.50 E-value=76 Score=24.76 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=50.2
Q ss_pred cchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhh--cchhhhHHhHhHHHHHHhHHhhHHHHHHHHHHH
Q 008936 47 QDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQ--NEKYTLERKVSELRMAIDEKQNEAITSALNELA 116 (548)
Q Consensus 47 ~d~~~~~L~~k~r~~eeEI~~LRk~LadasvKE~Qll--nEKyvLErRiA~mRmAfDqqQqdlVdAASKaLS 116 (548)
.|-....++-...+-+.-|.++++.|.+..- +| .|+..++..|..||-+.+....+.|+++.++|-
T Consensus 19 eD~~~R~~ie~~n~ae~~i~~~e~~L~e~~~----~L~~~e~~~i~~~i~~l~~~l~~~d~~~I~~~~~~L~ 86 (112)
T d1u00a1 19 QDVKARMLAEQKVEAARVLESLHGALAADAA----LLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVD 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG----GSCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh----hCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3555666665556666677788888876532 34 677789999999999999888889999988885
No 13
>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus subtilis [TaxId: 1423]}
Probab=21.19 E-value=49 Score=27.68 Aligned_cols=31 Identities=32% Similarity=0.386 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHhHh
Q 008936 62 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVS 94 (548)
Q Consensus 62 eeEI~~LRk~LadasvKE~QllnEKyvLErRiA 94 (548)
.+||..|+.+-..| ...-++||--|+||||+
T Consensus 28 ~~EIa~L~EKaRKA--Eq~GivnE~aV~erK~~ 58 (118)
T d1sf9a_ 28 NTEIALLSEKARKA--EQHGIINELAVLERKIT 58 (118)
T ss_dssp HHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHccChhHHHHHHHHHH
Confidence 45666666554443 35678999999999986
Done!