Query 008937
Match_columns 548
No_of_seqs 197 out of 382
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 18:25:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 1.6E-90 3.5E-95 695.3 21.2 248 139-410 1-258 (258)
2 PF00651 BTB: BTB/POZ domain; 97.9 2E-05 4.4E-10 67.8 5.3 77 2-86 32-110 (111)
3 smart00225 BTB Broad-Complex, 97.7 4.9E-05 1.1E-09 61.3 5.0 65 2-68 20-84 (90)
4 PHA03098 kelch-like protein; P 97.4 0.00055 1.2E-08 75.4 8.6 142 2-179 32-179 (534)
5 KOG4441 Proteins containing BT 96.7 0.017 3.7E-07 65.3 13.3 198 2-269 57-260 (571)
6 PHA02713 hypothetical protein; 96.6 0.0089 1.9E-07 67.2 9.4 85 2-98 47-132 (557)
7 PHA02790 Kelch-like protein; P 95.8 0.014 2.9E-07 64.4 5.7 94 2-112 42-136 (480)
8 PF11822 DUF3342: Domain of un 89.3 0.42 9.1E-06 50.6 4.2 76 3-85 26-102 (317)
9 smart00512 Skp1 Found in Skp1 76.3 3.9 8.4E-05 35.8 4.2 62 3-66 23-104 (104)
10 PF08581 Tup_N: Tup N-terminal 70.8 7.3 0.00016 33.4 4.4 31 464-494 34-64 (79)
11 PF01166 TSC22: TSC-22/dip/bun 62.2 14 0.00031 30.0 4.2 33 459-491 11-43 (59)
12 KOG2075 Topoisomerase TOP1-int 57.0 79 0.0017 35.7 10.2 135 20-180 158-294 (521)
13 PF14363 AAA_assoc: Domain ass 56.4 6.5 0.00014 34.5 1.6 42 363-405 30-71 (98)
14 PF04508 Pox_A_type_inc: Viral 55.1 16 0.00035 24.5 2.8 18 470-487 2-19 (23)
15 COG2433 Uncharacterized conser 47.6 1.2E+02 0.0027 35.1 10.0 151 326-493 299-467 (652)
16 KOG4603 TBP-1 interacting prot 43.1 26 0.00055 34.5 3.4 55 463-517 108-176 (201)
17 PF07407 Seadorna_VP6: Seadorn 42.0 34 0.00073 36.8 4.3 32 455-486 32-63 (420)
18 TIGR01834 PHA_synth_III_E poly 37.4 47 0.001 35.6 4.6 30 468-497 288-317 (320)
19 TIGR02894 DNA_bind_RsfA transc 36.9 69 0.0015 31.1 5.2 30 461-490 103-132 (161)
20 PF10473 CENP-F_leu_zip: Leuci 34.5 71 0.0015 30.3 4.9 35 459-493 77-111 (140)
21 COG3510 CmcI Cephalosporin hyd 34.1 20 0.00043 36.2 1.2 38 358-395 181-220 (237)
22 PF00170 bZIP_1: bZIP transcri 33.5 1.1E+02 0.0024 24.5 5.2 18 471-488 42-59 (64)
23 PF14077 WD40_alt: Alternative 33.2 26 0.00056 27.3 1.4 20 471-490 13-32 (48)
24 PF10929 DUF2811: Protein of u 32.6 32 0.00069 28.0 1.9 18 373-390 9-26 (57)
25 PHA01750 hypothetical protein 32.1 91 0.002 26.2 4.5 31 462-492 42-72 (75)
26 PF15294 Leu_zip: Leucine zipp 31.9 78 0.0017 33.3 5.1 38 459-496 129-166 (278)
27 PF07716 bZIP_2: Basic region 31.5 1E+02 0.0022 24.0 4.6 30 466-495 22-51 (54)
28 PF09789 DUF2353: Uncharacteri 31.2 66 0.0014 34.5 4.5 37 459-495 76-112 (319)
29 PF13815 Dzip-like_N: Iguana/D 31.2 1.3E+02 0.0028 27.2 5.9 53 421-491 64-116 (118)
30 PF04977 DivIC: Septum formati 29.3 1.4E+02 0.003 24.2 5.3 34 462-495 17-50 (80)
31 KOG4603 TBP-1 interacting prot 29.1 1.1E+02 0.0023 30.3 5.2 39 459-497 76-114 (201)
32 smart00338 BRLZ basic region l 28.9 1.2E+02 0.0026 24.3 4.7 29 463-491 34-62 (65)
33 PRK14127 cell division protein 28.7 47 0.001 30.3 2.5 30 457-486 39-68 (109)
34 KOG4571 Activating transcripti 28.3 76 0.0016 33.6 4.3 41 457-497 250-290 (294)
35 PF07106 TBPIP: Tat binding pr 28.0 1.3E+02 0.0028 28.7 5.5 36 462-497 72-107 (169)
36 PF11365 DUF3166: Protein of u 27.6 1.6E+02 0.0035 26.3 5.6 38 460-497 6-43 (96)
37 PF03931 Skp1_POZ: Skp1 family 27.5 47 0.001 26.5 2.1 37 3-43 22-58 (62)
38 PF07989 Microtub_assoc: Micro 27.4 1.1E+02 0.0023 26.1 4.3 37 457-493 38-74 (75)
39 PF11336 DUF3138: Protein of u 27.0 71 0.0015 35.6 3.9 27 459-485 22-48 (514)
40 PF11853 DUF3373: Protein of u 24.3 54 0.0012 37.0 2.6 34 462-496 25-58 (489)
41 PRK13922 rod shape-determining 23.8 1.2E+02 0.0026 31.0 4.8 35 458-492 72-109 (276)
42 PF11123 DNA_Packaging_2: DNA 23.2 53 0.0011 28.3 1.7 15 372-386 31-45 (82)
43 PF05529 Bap31: B-cell recepto 23.0 1.4E+02 0.003 29.0 4.8 35 462-496 154-188 (192)
44 TIGR02209 ftsL_broad cell divi 22.2 2.1E+02 0.0045 23.8 5.2 35 463-497 25-59 (85)
45 PF12017 Tnp_P_element: Transp 22.2 1.4E+02 0.0031 30.5 4.9 21 462-482 18-38 (236)
46 PLN03205 ATR interacting prote 21.3 87 0.0019 34.9 3.3 29 462-490 134-162 (652)
47 KOG4682 Uncharacterized conser 21.0 1.2E+02 0.0025 33.8 4.2 67 1-67 88-156 (488)
48 PF06005 DUF904: Protein of un 21.0 2.6E+02 0.0056 23.6 5.4 38 460-497 16-53 (72)
49 PRK15322 invasion protein OrgB 20.7 2.2E+02 0.0047 28.9 5.6 85 301-385 88-203 (210)
50 PF08776 VASP_tetra: VASP tetr 20.6 2.1E+02 0.0045 21.8 4.1 12 466-477 15-26 (40)
51 PRK10722 hypothetical protein; 20.4 7.9E+02 0.017 25.6 9.7 109 351-496 88-203 (247)
52 PF10186 Atg14: UV radiation r 20.2 1.3E+02 0.0029 30.3 4.2 33 409-441 13-45 (302)
53 PF10224 DUF2205: Predicted co 20.2 2.1E+02 0.0046 24.7 4.8 33 459-491 20-52 (80)
54 PF10932 DUF2783: Protein of u 20.2 77 0.0017 26.0 2.0 22 372-396 11-32 (60)
55 KOG0783 Uncharacterized conser 20.0 1.2E+02 0.0025 36.8 4.1 86 2-115 579-676 (1267)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=1.6e-90 Score=695.27 Aligned_cols=248 Identities=47% Similarity=0.890 Sum_probs=222.8
Q ss_pred CCceeccccccChhHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcCCCccccccccCCCCCCcchhHhhhccCCcccccc
Q 008937 139 QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVG 218 (548)
Q Consensus 139 ~dWW~eDl~~L~~~~f~rvi~am~~~g~~~~~i~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (548)
+|||||||+.|++|+|+|||.+|+++||+|++||++|++||+||||++.+...+.... ....+..
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~---------------~~~~~~~ 65 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSS---------------AESSTSS 65 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccccccc---------------ccccchh
Confidence 4899999999999999999999999999999999999999999999985431111000 1223446
Q ss_pred hhhhHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcccccccccccccCCCCccccccCCCC
Q 008937 219 QKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPE 298 (548)
Q Consensus 219 ~~~qr~llE~iv~LLP~ek~~vsc~fL~~LLR~A~~l~as~~cr~~LE~RIg~qLdqAtldDLLIPs~~~~~~~~~~~~~ 298 (548)
..+||.+||+||+|||.++++|||+|||+|||+|+++++|++||.+||+|||.|||||||||||||+ ++.++
T Consensus 66 ~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~~~------- 137 (258)
T PF03000_consen 66 ENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPSGE------- 137 (258)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCCcc-------
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 33322
Q ss_pred CCcccchhHHHHHHHHHHhhhhhh----------hhhhcchhhHHHHhHHHHHhhHhcCCCCCChhHHHHHHHhcCCccc
Q 008937 299 HNTMHNIDVVQRIMDYFLMHEQQQ----------QQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENAR 368 (548)
Q Consensus 299 ~~tlyDVd~V~Riv~~Fl~~~~~~----------~~~~~~~~~~kVakLvD~YLaEiA~D~nL~~skF~~LAealPd~AR 368 (548)
+|+||||+|+|||++||.+++.. ...++..++.+||||||+||+|||+|+||+|+||++|||+||++||
T Consensus 138 -~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR 216 (258)
T PF03000_consen 138 -DTLYDVDLVQRIVEHFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSAR 216 (258)
T ss_pred -cchhhHHHHHHHHHHHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhh
Confidence 19999999999999999984321 1125678999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHhhCCCCCHHHhhhhhcccccCCCCHHHh
Q 008937 369 TCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDAC 410 (548)
Q Consensus 369 ~~~DgLYRAIDiYLKaHp~lse~Er~~lCr~mdcqKLS~EAc 410 (548)
++|||||||||||||+||+||++||++||++|||||||+|||
T Consensus 217 ~~hD~LYrAID~YLk~Hp~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 217 PSHDGLYRAIDIYLKAHPGLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred hccchHHHHHHHHHHHcccCCHHHHHHHHhhCCcccCCcccC
Confidence 999999999999999999999999999999999999999999
No 2
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=97.87 E-value=2e-05 Score=67.78 Aligned_cols=77 Identities=23% Similarity=0.320 Sum_probs=66.6
Q ss_pred ccccHHHHHhcCCC-CCCCccceEecCCCCChHHHHHHHhhhcCCccccC-CcchhHHhhhhhhhcCcccccCCchHHHH
Q 008937 2 SKCGYIARLELQPS-ISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFN-PNNIAPLRCASEFLDMSEEYEDGNLISKT 79 (548)
Q Consensus 2 SkSg~l~kli~~~~-~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt-~~NVa~LrCAAeyLeMtE~~~~~NLi~kt 79 (548)
++|.||++++.... ......+|.+.+++ +++|+.+.+|||+..+.++ ..|+..+...|.+++|.+ |...+
T Consensus 32 ~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~------L~~~~ 103 (111)
T PF00651_consen 32 ARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPE------LKKAC 103 (111)
T ss_dssp HHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHH------HHHHH
T ss_pred ccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHH------HHHHH
Confidence 57999999999873 22133478889888 8899999999999999998 999999999999999996 99999
Q ss_pred HHHhhhh
Q 008937 80 EAFLTLV 86 (548)
Q Consensus 80 E~FL~~~ 86 (548)
+.||.+.
T Consensus 104 ~~~l~~~ 110 (111)
T PF00651_consen 104 EKFLQES 110 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999763
No 3
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.73 E-value=4.9e-05 Score=61.30 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=54.6
Q ss_pred ccccHHHHHhcCCCCCCCccceEecCCCCChHHHHHHHhhhcCCccccCCcchhHHhhhhhhhcCcc
Q 008937 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSE 68 (548)
Q Consensus 2 SkSg~l~kli~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE 68 (548)
++|.++++++...........+.+.| ..+++|+.+-+|||+..+.+++.|+..+..+|+|++|.+
T Consensus 20 ~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~ 84 (90)
T smart00225 20 ACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPG 84 (90)
T ss_pred hcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHH
Confidence 46899999998654322345677776 569999999999999999999999999999999999976
No 4
>PHA03098 kelch-like protein; Provisional
Probab=97.35 E-value=0.00055 Score=75.37 Aligned_cols=142 Identities=15% Similarity=0.252 Sum_probs=98.5
Q ss_pred ccccHHHHHhcCCCCCCCccceEecCCCCChHHHHHHHhhhcCCccccCCcchhHHhhhhhhhcCcccccCCchHHHHHH
Q 008937 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (548)
Q Consensus 2 SkSg~l~kli~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE~ 81 (548)
++|.||+.++...-. ..+|.|.+ -+++|+.+.+|-|..+++|+..||..|--||.+|+|.+ |....+.
T Consensus 32 a~S~yF~~mf~~~~~---~~~i~l~~---~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~------l~~~C~~ 99 (534)
T PHA03098 32 SSSEYFKKMFKNNFK---ENEINLNI---DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDF------LINLCIN 99 (534)
T ss_pred hhhHHHHHHHhCCCC---CceEEecC---CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence 579999999875332 35688876 68999999999999999999999999999999999997 9999999
Q ss_pred HhhhhhcCChHHHHHHHhhcccccchhhhhh---hHHHHHHHHHHHhccCCccccccccCCCceeccccccChhHHHHHH
Q 008937 82 FLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRII 158 (548)
Q Consensus 82 FL~~~vl~sW~dsi~vLksce~llp~aE~l~---iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvi 158 (548)
||...+ +-. +|-.++..|+..+ +.+.|.+-|+..... +.. -+|...|+.+....+|
T Consensus 100 ~l~~~l--~~~-------nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~-------v~~-----~~~f~~l~~~~l~~ll 158 (534)
T PHA03098 100 YIIKII--DDN-------NCIDIYRFSFFYGCKKLYSAAYNYIRNNIEL-------IYN-----DPDFIYLSKNELIKIL 158 (534)
T ss_pred HHHHhC--CHh-------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-------Hhc-----CchhhcCCHHHHHHHh
Confidence 998754 223 3444455565544 555676666644210 000 1456677776666554
Q ss_pred HHHHhcCC---CchhHHHHHHHHH
Q 008937 159 TTIKVKGT---KPEIIGKCIMHYA 179 (548)
Q Consensus 159 ~am~~~g~---~~~~i~~~l~~Ya 179 (548)
. +..+ +.+.+-.+++.++
T Consensus 159 ~---~~~L~v~~E~~v~~av~~W~ 179 (534)
T PHA03098 159 S---DDKLNVSSEDVVLEIIIKWL 179 (534)
T ss_pred c---CCCcCcCCHHHHHHHHHHHH
Confidence 4 3332 3445666665554
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.74 E-value=0.017 Score=65.27 Aligned_cols=198 Identities=15% Similarity=0.253 Sum_probs=126.1
Q ss_pred ccccHHHHHhcCCCCCCCccceEecCCCCChHHHHHHHhhhcCCccccCCcchhHHhhhhhhhcCcccccCCchHHHHHH
Q 008937 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (548)
Q Consensus 2 SkSg~l~kli~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE~ 81 (548)
+-|.||+-++...-......+|.|.+ .-++++++...|+|..+++|+..||-.|-=||.+|+|++ +..-.-.
T Consensus 57 a~S~YFraMFt~~l~e~~~~~i~l~~--v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~------v~~~C~~ 128 (571)
T KOG4441|consen 57 ACSPYFRAMFTSGLKESKQKEINLEG--VDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPE------VVDACCE 128 (571)
T ss_pred hccHHHHHHhcCCcccccceEEEEec--CCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHH------HHHHHHH
Confidence 45789999887432222556899999 778999999999999999999999999999999999997 6777888
Q ss_pred HhhhhhcCChHHHHH-----HHhhcccccchhhhhhhHHHHHHHHHHHhccCCccccccccCCCceeccccccChhHHHH
Q 008937 82 FLTLVILSSWKETIT-----VLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMR 156 (548)
Q Consensus 82 FL~~~vl~sW~dsi~-----vLksce~llp~aE~l~iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~r 156 (548)
||...+.. ..++. -+.+|..|...|++. |.+...+ + |=-||...|+.+.+..
T Consensus 129 fL~~~l~~--~Nclgi~~~a~~~~~~~L~~~a~~~-i~~~F~~-----v---------------~~~eefl~L~~~~l~~ 185 (571)
T KOG4441|consen 129 FLESQLDP--SNCLGIRRFAELHSCTELLEVADEY-ILQHFAE-----V---------------SKTEEFLLLSLEELIG 185 (571)
T ss_pred HHHhcCCH--HHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHH-----H---------------hccHHhhCCCHHHHHh
Confidence 99875532 33332 234566555554432 2222111 1 1135555678777666
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhhcCCCccccccccCCCCCCcchhHhhhccCCcccccchhhhHHHHHHHHhhCCCC
Q 008937 157 IITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQ 236 (548)
Q Consensus 157 vi~am~~~g~~~~~i~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llE~iv~LLP~e 236 (548)
+|..-.-.--+++.+..++ -+|+..-. +..+.. +..+|..-
T Consensus 186 ll~~d~l~v~~E~~vf~a~----~~Wv~~d~-------------------------------~~R~~~----~~~ll~~v 226 (571)
T KOG4441|consen 186 LLSSDDLNVDSEEEVFEAA----MRWVKHDF-------------------------------EEREEH----LPALLEAV 226 (571)
T ss_pred hccccCCCcCCHHHHHHHH----HHHHhcCH-------------------------------hhHHHH----HHHHHHhc
Confidence 6655433333444444444 45553210 001111 11122111
Q ss_pred C-CcccHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 008937 237 D-EGVSCKFFLQMLKMAMVYNASPALISELEKRV 269 (548)
Q Consensus 237 k-~~vsc~fL~~LLR~A~~l~as~~cr~~LE~RI 269 (548)
+ .-+|-.||.......-.+..+++|+.-|..=.
T Consensus 227 r~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 227 RLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred CccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 1 23677899999999999999999998876544
No 6
>PHA02713 hypothetical protein; Provisional
Probab=96.56 E-value=0.0089 Score=67.19 Aligned_cols=85 Identities=16% Similarity=0.318 Sum_probs=67.2
Q ss_pred ccccHHHHHhcCCC-CCCCccceEecCCCCChHHHHHHHhhhcCCccccCCcchhHHhhhhhhhcCcccccCCchHHHHH
Q 008937 2 SKCGYIARLELQPS-ISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE 80 (548)
Q Consensus 2 SkSg~l~kli~~~~-~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE 80 (548)
+.|.||+.|+...- ++....+|+|.++ -+++|+.+.+|.|..+ ||+.||-.|--||.||+|++ |....+
T Consensus 47 a~S~YF~amF~~~~~e~~~~~~v~l~~v--~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~------l~~~C~ 116 (557)
T PHA02713 47 AGSKYFRTLFTTPMIIRDLVTRVNLQMF--DKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDD------LVTDCE 116 (557)
T ss_pred hcCHHHHHHhcCCchhhccCceEEeccC--CHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHH------HHHHHH
Confidence 57999999997432 1212357899887 4899999999999986 79999999999999999997 889999
Q ss_pred HHhhhhhcCChHHHHHHH
Q 008937 81 AFLTLVILSSWKETITVL 98 (548)
Q Consensus 81 ~FL~~~vl~sW~dsi~vL 98 (548)
.||.+.+-. ..++.++
T Consensus 117 ~~l~~~l~~--~NCl~i~ 132 (557)
T PHA02713 117 SYIKDYTNH--DTCIYMY 132 (557)
T ss_pred HHHHhhCCc--cchHHHH
Confidence 999875532 3445444
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=95.78 E-value=0.014 Score=64.40 Aligned_cols=94 Identities=12% Similarity=0.060 Sum_probs=71.4
Q ss_pred ccccHHHHHhcCC-CCCCCccceEecCCCCChHHHHHHHhhhcCCccccCCcchhHHhhhhhhhcCcccccCCchHHHHH
Q 008937 2 SKCGYIARLELQP-SISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE 80 (548)
Q Consensus 2 SkSg~l~kli~~~-~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE 80 (548)
+-|.||+.|+... +++ ..+|.+..+--.+++|+.+..|-|..+++||..||-.|-.||.||+|++ ++....
T Consensus 42 a~S~YFraMF~~~~~Es--~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~------v~~~C~ 113 (480)
T PHA02790 42 KLSPYFRTHLRQKYTKN--KDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEF------IIYTCI 113 (480)
T ss_pred hcCHHHHHHhcCCcccc--ccceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHH------HHHHHH
Confidence 4688999998742 222 2245553223458999999999999999999999999999999999996 889999
Q ss_pred HHhhhhhcCChHHHHHHHhhcccccchhhhhh
Q 008937 81 AFLTLVILSSWKETITVLKSCKNLSPWAENLQ 112 (548)
Q Consensus 81 ~FL~~~vl~sW~dsi~vLksce~llp~aE~l~ 112 (548)
.||.+.+-. ..|=.+...|+..+
T Consensus 114 ~fL~~~l~~---------~NCl~i~~~A~~y~ 136 (480)
T PHA02790 114 NFILRDFRK---------EYCVECYMMGIEYG 136 (480)
T ss_pred HHHHhhCCc---------chHHHHHHHHHHhC
Confidence 999986633 24445555666554
No 8
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=89.26 E-value=0.42 Score=50.55 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=55.7
Q ss_pred cccHHHHHhcC-CCCCCCccceEecCCCCChHHHHHHHhhhcCCccccCCcchhHHhhhhhhhcCcccccCCchHHHHHH
Q 008937 3 KCGYIARLELQ-PSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (548)
Q Consensus 3 kSg~l~kli~~-~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE~ 81 (548)
+=+||+.++.. .+++.....|.|. +-=.-.+||.-.++++|-...|||.||+++---++||+|++ |++.+=.
T Consensus 26 ~M~YF~~~l~~~~~~~~~~~~idis-VhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~------Lve~cl~ 98 (317)
T PF11822_consen 26 EMRYFAEYLSRYINDSQRWEEIDIS-VHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES------LVEECLQ 98 (317)
T ss_pred hhHHHHHHHhhcccccCcCCCcceE-EecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH------HHHHHHH
Confidence 34688888853 1111112233331 12445799999999999999999999999999999999997 8888888
Q ss_pred Hhhh
Q 008937 82 FLTL 85 (548)
Q Consensus 82 FL~~ 85 (548)
|...
T Consensus 99 y~~~ 102 (317)
T PF11822_consen 99 YCHD 102 (317)
T ss_pred HHHH
Confidence 8754
No 9
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=76.28 E-value=3.9 Score=35.81 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=41.6
Q ss_pred cccHHHHHhcCCCCC-CCccceEecCCCCChHHHHHHHhhhcCCcc-------------------ccCCcchhHHhhhhh
Q 008937 3 KCGYIARLELQPSIS-NLGYDLKLENFPGGSETFEIILKFCYGLPI-------------------AFNPNNIAPLRCASE 62 (548)
Q Consensus 3 kSg~l~kli~~~~~~-~~~~~i~L~dfPGGaeaFEl~akFCYG~~i-------------------~lt~~NVa~LrCAAe 62 (548)
.|+.|+.++.+.... ++...|.|++++ +.+++++..||+--+- .+...++--|-.||.
T Consensus 23 ~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAn 100 (104)
T smart00512 23 QSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAAN 100 (104)
T ss_pred HHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHH
Confidence 588899998765432 122467777777 6899999999974210 044445666777777
Q ss_pred hhcC
Q 008937 63 FLDM 66 (548)
Q Consensus 63 yLeM 66 (548)
||++
T Consensus 101 yL~I 104 (104)
T smart00512 101 YLDI 104 (104)
T ss_pred hhCC
Confidence 7764
No 10
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=70.78 E-value=7.3 Score=33.43 Aligned_cols=31 Identities=19% Similarity=0.533 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008937 464 IKNLREELENVKTRMAELQKDYSELQREYEK 494 (548)
Q Consensus 464 ~~~Lk~el~~mr~rv~eLEk~c~~mk~~~~k 494 (548)
+...=.||+.||..|.+||..+..||++++.
T Consensus 34 i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 34 INSQIQEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567999999999999999999988863
No 11
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=62.17 E-value=14 Score=30.03 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=28.0
Q ss_pred cchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008937 459 STSIEIKNLREELENVKTRMAELQKDYSELQRE 491 (548)
Q Consensus 459 ~~~rE~~~Lk~el~~mr~rv~eLEk~c~~mk~~ 491 (548)
+.+.|.+.||..+..+..|+.+||.|+.-+|+-
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346788999999999999999999999988765
No 12
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=56.99 E-value=79 Score=35.70 Aligned_cols=135 Identities=13% Similarity=0.226 Sum_probs=90.1
Q ss_pred ccceEecCCCCChHHHHHHHhhhcCCccccCCcchhHHhhhhhhhcCcccccCCchHHHHHHHhhhhhcCChHHHHHHHh
Q 008937 20 GYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLK 99 (548)
Q Consensus 20 ~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE~FL~~~vl~sW~dsi~vLk 99 (548)
..+|.++|+ -+.+|+---||=|+-.+.+.+.||-.+.=+|. .|-.+-|...+-+||....+. .....-|-
T Consensus 158 s~ei~lpdv--epaaFl~~L~flYsdev~~~~dtvi~tl~~Ak------KY~VpaLer~CVkflr~~l~~--~naf~~L~ 227 (521)
T KOG2075|consen 158 SLEIRLPDV--EPAAFLAFLRFLYSDEVKLAADTVITTLYAAK------KYLVPALERQCVKFLRKNLMA--DNAFLELF 227 (521)
T ss_pred CceeecCCc--ChhHhHHHHHHHhcchhhhhHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHhcCC--hHHHHHHH
Confidence 558888876 48999999999999999999999988776664 233455888888888875543 44555555
Q ss_pred hcccccchhhhhhhHHHHHHHHHHHh--ccCCccccccccCCCceeccccccChhHHHHHHHHHHhcCCCchhHHHHHHH
Q 008937 100 SCKNLSPWAENLQIVRRCCDSIAWKA--SRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMH 177 (548)
Q Consensus 100 sce~llp~aE~l~iv~RCidsla~ka--~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvi~am~~~g~~~~~i~~~l~~ 177 (548)
+|-.+ .++=.+.++|++.|.-.. |.++ =||-|.-.+ .++|..|+.. ....++.-.+-++...
T Consensus 228 q~A~l---f~ep~Li~~c~e~id~~~~~al~~-----------EGf~did~~-~dt~~evl~r-~~l~~~e~~lfeA~lk 291 (521)
T KOG2075|consen 228 QRAKL---FDEPSLISICLEVIDKSFEDALTP-----------EGFCDIDST-RDTYEEVLRR-DTLEAREFRLFEAALK 291 (521)
T ss_pred HHHHh---hcCHHHHHHHHHHhhhHHHhhhCc-----------cceeehhhH-HHHHHHHHhh-cccchhHHHHHHHHHh
Confidence 66443 455678899999886432 3222 366666555 7888777653 1122344445555554
Q ss_pred HHH
Q 008937 178 YAK 180 (548)
Q Consensus 178 Ya~ 180 (548)
|+.
T Consensus 292 w~~ 294 (521)
T KOG2075|consen 292 WAE 294 (521)
T ss_pred hcc
Confidence 443
No 13
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=56.35 E-value=6.5 Score=34.48 Aligned_cols=42 Identities=33% Similarity=0.419 Sum_probs=32.9
Q ss_pred cCCccccccchhHHHHHHHHhhCCCCCHHHhhhhhcccccCCC
Q 008937 363 LPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKL 405 (548)
Q Consensus 363 lPd~AR~~~DgLYRAIDiYLKaHp~lse~Er~~lCr~mdcqKL 405 (548)
+|++..-....+|+|+.+||.+.+..+. .|-++++.-|.+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 4555557788999999999999987776 78888877776654
No 14
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=55.15 E-value=16 Score=24.50 Aligned_cols=18 Identities=28% Similarity=0.717 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008937 470 ELENVKTRMAELQKDYSE 487 (548)
Q Consensus 470 el~~mr~rv~eLEk~c~~ 487 (548)
||++.|.|+.+||++...
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 789999999999988653
No 15
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.64 E-value=1.2e+02 Score=35.15 Aligned_cols=151 Identities=18% Similarity=0.208 Sum_probs=89.4
Q ss_pred hcchhhHHHHhHHHHHhhHhcCCCCCChhHHHHHHHhcCCcccccc--chhHHHHHHHHhhCCCCCHHHhhhhhccc--c
Q 008937 326 QQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCH--DGLYRAIDTYLKSHPSLSEHDRRRLCKLM--N 401 (548)
Q Consensus 326 ~~~~~~~kVakLvD~YLaEiA~D~nL~~skF~~LAealPd~AR~~~--DgLYRAIDiYLKaHp~lse~Er~~lCr~m--d 401 (548)
|.+....|+|.-++.-|. -||..|++++=+.+-...+-+....| |.|=-|+..|+.--|.|..-||+-==-.| |
T Consensus 299 p~P~~V~KiAasf~A~ly--~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~~~d 376 (652)
T COG2433 299 PAPETVKKIAASFNAVLY--TPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERKLPELGIWKD 376 (652)
T ss_pred CChHHHHHHHHHcCCccc--CCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 456678888887777663 68999999988888888888888887 89999999999877777777765321111 1
Q ss_pred c--------CCCCHHHhHHHhhCCCCCchHHHHHHHHHhhhhhhccccCCCCccCCCCC------CCCCCCcchHHHhHH
Q 008937 402 C--------EKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSE------QGDTQPSTSIEIKNL 467 (548)
Q Consensus 402 c--------qKLS~EAc~HAaQNeRLPlr~vVQvLf~eQl~lr~~~~~~~~~~~~~~~~------~~~~~~~~~rE~~~L 467 (548)
- .-.|..+|.--+.-++.|=-- .++ |-+. .....+. .......+..||+.|
T Consensus 377 ~~rika~VIrG~~l~eal~~~~e~~~p~e~-~~~----~~~e----------~~ei~~~~~~i~~~~~~ve~l~~e~~~L 441 (652)
T COG2433 377 VERIKALVIRGYPLAEALSKVKEEERPREK-EGT----EEEE----------RREITVYEKRIKKLEETVERLEEENSEL 441 (652)
T ss_pred HHHHHHHeecCCcHHHHHHHHHhhhccccc-ccc----cccc----------ccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 111222222222111111000 000 0000 0000000 001122456788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008937 468 REELENVKTRMAELQKDYSELQREYE 493 (548)
Q Consensus 468 k~el~~mr~rv~eLEk~c~~mk~~~~ 493 (548)
+.+++.|+..+.+|+.+|..++.+++
T Consensus 442 ~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 442 KRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888876654
No 16
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=43.08 E-value=26 Score=34.50 Aligned_cols=55 Identities=24% Similarity=0.442 Sum_probs=33.5
Q ss_pred HHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcccCcC------------cCcccchhhhhhcccC
Q 008937 463 EIKNLREE--LENVKTRMAELQKDYSELQREYEKLSNKHKI------------VSSWSLGWRKIKNSFH 517 (548)
Q Consensus 463 E~~~Lk~e--l~~mr~rv~eLEk~c~~mk~~~~k~~~~~k~------------~~~~~~~wk~l~~~~~ 517 (548)
|+++|... ++.|+....+|-++|..|+..+.++...... -...-++|||.+|.|.
T Consensus 108 Eik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ 176 (201)
T KOG4603|consen 108 EIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFR 176 (201)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555444 4667777777777777777666665432111 1344678999888643
No 17
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=41.97 E-value=34 Score=36.77 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=24.3
Q ss_pred CCCCcchHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008937 455 DTQPSTSIEIKNLREELENVKTRMAELQKDYS 486 (548)
Q Consensus 455 ~~~~~~~rE~~~Lk~el~~mr~rv~eLEk~c~ 486 (548)
++-..+++||..||.|.+.+|.+|..||.+..
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 44456778888888888888888888876654
No 18
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=37.43 E-value=47 Score=35.59 Aligned_cols=30 Identities=23% Similarity=0.532 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008937 468 REELENVKTRMAELQKDYSELQREYEKLSN 497 (548)
Q Consensus 468 k~el~~mr~rv~eLEk~c~~mk~~~~k~~~ 497 (548)
|.||+.+..|+.|||++...|+++++.+.+
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 457999999999999999999999887654
No 19
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.90 E-value=69 Score=31.14 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=16.9
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008937 461 SIEIKNLREELENVKTRMAELQKDYSELQR 490 (548)
Q Consensus 461 ~rE~~~Lk~el~~mr~rv~eLEk~c~~mk~ 490 (548)
..||+.|+.|+..++.++.+||++...+++
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665555555555533
No 20
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=34.47 E-value=71 Score=30.31 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=24.5
Q ss_pred cchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008937 459 STSIEIKNLREELENVKTRMAELQKDYSELQREYE 493 (548)
Q Consensus 459 ~~~rE~~~Lk~el~~mr~rv~eLEk~c~~mk~~~~ 493 (548)
+++.|+..|-.+++.|+.+|.|||.-++.....++
T Consensus 77 ~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 77 TLRSEKENLDKELQKKQEKVSELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45567777777777788888888777766655443
No 21
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=34.10 E-value=20 Score=36.17 Aligned_cols=38 Identities=29% Similarity=0.429 Sum_probs=29.0
Q ss_pred HHHHhcC--CccccccchhHHHHHHHHhhCCCCCHHHhhh
Q 008937 358 VLAESLP--ENARTCHDGLYRAIDTYLKSHPSLSEHDRRR 395 (548)
Q Consensus 358 ~LAealP--d~AR~~~DgLYRAIDiYLKaHp~lse~Er~~ 395 (548)
.+.+-+| +..+..-+|=|+||.-|||.||+==|.++.+
T Consensus 181 s~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~~ 220 (237)
T COG3510 181 SNVNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTSR 220 (237)
T ss_pred ccccCCCCcccchhcCCChHHHHHHHHHhCCcccccchhh
Confidence 3445577 6666678999999999999999766666543
No 22
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=33.51 E-value=1.1e+02 Score=24.51 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008937 471 LENVKTRMAELQKDYSEL 488 (548)
Q Consensus 471 l~~mr~rv~eLEk~c~~m 488 (548)
.+.|+..+..|+.++..|
T Consensus 42 n~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 42 NEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 23
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=33.24 E-value=26 Score=27.33 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008937 471 LENVKTRMAELQKDYSELQR 490 (548)
Q Consensus 471 l~~mr~rv~eLEk~c~~mk~ 490 (548)
-+.+|.||+|||.|-..+++
T Consensus 13 ~e~l~vrv~eLEeEV~~LrK 32 (48)
T PF14077_consen 13 QEQLRVRVSELEEEVRTLRK 32 (48)
T ss_pred cchheeeHHHHHHHHHHHHH
Confidence 46788999999999887753
No 24
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=32.62 E-value=32 Score=27.98 Aligned_cols=18 Identities=22% Similarity=0.656 Sum_probs=16.1
Q ss_pred hhHHHHHHHHhhCCCCCH
Q 008937 373 GLYRAIDTYLKSHPSLSE 390 (548)
Q Consensus 373 gLYRAIDiYLKaHp~lse 390 (548)
-||.|+.-||+.||+-..
T Consensus 9 ~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 9 DLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHcCCCchH
Confidence 599999999999998765
No 25
>PHA01750 hypothetical protein
Probab=32.10 E-value=91 Score=26.20 Aligned_cols=31 Identities=32% Similarity=0.608 Sum_probs=16.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008937 462 IEIKNLREELENVKTRMAELQKDYSELQREY 492 (548)
Q Consensus 462 rE~~~Lk~el~~mr~rv~eLEk~c~~mk~~~ 492 (548)
.|...|+.|++..+.|.-+||++...+++.+
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3455555555555555555555555555443
No 26
>PF15294 Leu_zip: Leucine zipper
Probab=31.92 E-value=78 Score=33.32 Aligned_cols=38 Identities=34% Similarity=0.400 Sum_probs=32.3
Q ss_pred cchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008937 459 STSIEIKNLREELENVKTRMAELQKDYSELQREYEKLS 496 (548)
Q Consensus 459 ~~~rE~~~Lk~el~~mr~rv~eLEk~c~~mk~~~~k~~ 496 (548)
.+..|+..|+.|.+++|.|+..+|++|..+-.|-.++.
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~ 166 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLE 166 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999998865555443
No 27
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=31.51 E-value=1e+02 Score=23.97 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008937 466 NLREELENVKTRMAELQKDYSELQREYEKL 495 (548)
Q Consensus 466 ~Lk~el~~mr~rv~eLEk~c~~mk~~~~k~ 495 (548)
.-|..++.|..+|.+|+.+...|++++..+
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888888888765
No 28
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=31.19 E-value=66 Score=34.46 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=32.8
Q ss_pred cchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008937 459 STSIEIKNLREELENVKTRMAELQKDYSELQREYEKL 495 (548)
Q Consensus 459 ~~~rE~~~Lk~el~~mr~rv~eLEk~c~~mk~~~~k~ 495 (548)
.++.+|..|+.|++.+|.++.|++.+|..+++.+.+.
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 3467899999999999999999999999999887664
No 29
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=31.17 E-value=1.3e+02 Score=27.21 Aligned_cols=53 Identities=15% Similarity=0.373 Sum_probs=32.5
Q ss_pred chHHHHHHHHHhhhhhhccccCCCCccCCCCCCCCCCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008937 421 LRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVKTRMAELQKDYSELQRE 491 (548)
Q Consensus 421 lr~vVQvLf~eQl~lr~~~~~~~~~~~~~~~~~~~~~~~~~rE~~~Lk~el~~mr~rv~eLEk~c~~mk~~ 491 (548)
++..+|=|+.-|-.|-..+. .+..+++.+..+.++++..+.+++.++..+|+|
T Consensus 64 aQl~ieYLl~~q~~L~~~~~------------------~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 64 AQLSIEYLLHCQEYLSSQLE------------------QLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888877766644211 224455666666666666666666666666655
No 30
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.34 E-value=1.4e+02 Score=24.24 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=25.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008937 462 IEIKNLREELENVKTRMAELQKDYSELQREYEKL 495 (548)
Q Consensus 462 rE~~~Lk~el~~mr~rv~eLEk~c~~mk~~~~k~ 495 (548)
.+...++.++..++.++.+++.+-..++++++++
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777777777777777777777776
No 31
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=29.10 E-value=1.1e+02 Score=30.31 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=33.1
Q ss_pred cchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008937 459 STSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 497 (548)
Q Consensus 459 ~~~rE~~~Lk~el~~mr~rv~eLEk~c~~mk~~~~k~~~ 497 (548)
....|...|..++.++..++.+|++.|+.|..||.-+.+
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999888766654
No 32
>smart00338 BRLZ basic region leucin zipper.
Probab=28.86 E-value=1.2e+02 Score=24.34 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=14.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008937 463 EIKNLREELENVKTRMAELQKDYSELQRE 491 (548)
Q Consensus 463 E~~~Lk~el~~mr~rv~eLEk~c~~mk~~ 491 (548)
+...|..+.+.|+.++..|+.++..++++
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555444
No 33
>PRK14127 cell division protein GpsB; Provisional
Probab=28.73 E-value=47 Score=30.25 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=17.4
Q ss_pred CCcchHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008937 457 QPSTSIEIKNLREELENVKTRMAELQKDYS 486 (548)
Q Consensus 457 ~~~~~rE~~~Lk~el~~mr~rv~eLEk~c~ 486 (548)
+..+.+||..|+.++.+++.++.+++..-.
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334455666666666666666666665444
No 34
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=28.30 E-value=76 Score=33.59 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=32.1
Q ss_pred CCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008937 457 QPSTSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 497 (548)
Q Consensus 457 ~~~~~rE~~~Lk~el~~mr~rv~eLEk~c~~mk~~~~k~~~ 497 (548)
|.++..|.+.|-..=+.+|.++.+||+|...||+-|.-.-+
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567777777889999999999999999988865443
No 35
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.01 E-value=1.3e+02 Score=28.67 Aligned_cols=36 Identities=31% Similarity=0.524 Sum_probs=21.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008937 462 IEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 497 (548)
Q Consensus 462 rE~~~Lk~el~~mr~rv~eLEk~c~~mk~~~~k~~~ 497 (548)
.|...|..++..++.++.+|+.++..++.++..+.+
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555556666666666666666666555555544
No 36
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=27.56 E-value=1.6e+02 Score=26.33 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=31.7
Q ss_pred chHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008937 460 TSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 497 (548)
Q Consensus 460 ~~rE~~~Lk~el~~mr~rv~eLEk~c~~mk~~~~k~~~ 497 (548)
+++..+=.+.|-+-||..++|||.+-..|..|+.|...
T Consensus 6 LR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 6 LRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556778899999999999999999999998754
No 37
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=27.53 E-value=47 Score=26.52 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=28.1
Q ss_pred cccHHHHHhcCCCCCCCccceEecCCCCChHHHHHHHhhhc
Q 008937 3 KCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCY 43 (548)
Q Consensus 3 kSg~l~kli~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCY 43 (548)
.|+.|+.++.+..+. +. .|.|+++. +++++.+..+|+
T Consensus 22 ~S~~i~~ml~~~~~~-~~-~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 22 QSKTIKNMLEDLGDE-DE-PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp TSHHHHHHHHCTCCC-GT-EEEETTS---HHHHHHHHHHHH
T ss_pred HhHHHHHHHhhhccc-cc-ccccCccC--HHHHHHHHHHHH
Confidence 588999999875543 22 68888876 479999999997
No 38
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=27.39 E-value=1.1e+02 Score=26.05 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=27.5
Q ss_pred CCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008937 457 QPSTSIEIKNLREELENVKTRMAELQKDYSELQREYE 493 (548)
Q Consensus 457 ~~~~~rE~~~Lk~el~~mr~rv~eLEk~c~~mk~~~~ 493 (548)
......||-+||.+++.|+..+.++++......+.++
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455778888888888888888888877766665553
No 39
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=26.98 E-value=71 Score=35.64 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.2
Q ss_pred cchHHHhHHHHHHHHHHHHHHHHHHHH
Q 008937 459 STSIEIKNLREELENVKTRMAELQKDY 485 (548)
Q Consensus 459 ~~~rE~~~Lk~el~~mr~rv~eLEk~c 485 (548)
+...+|++|+.+|..+|.+|.|||++.
T Consensus 22 a~a~~i~~L~~ql~aLq~~v~eL~~~l 48 (514)
T PF11336_consen 22 ATADQIKALQAQLQALQDQVNELRAKL 48 (514)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999999999999763
No 40
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=24.34 E-value=54 Score=37.03 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=22.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008937 462 IEIKNLREELENVKTRMAELQKDYSELQREYEKLS 496 (548)
Q Consensus 462 rE~~~Lk~el~~mr~rv~eLEk~c~~mk~~~~k~~ 496 (548)
.|...+| +|+.++.++.|||++...|+.+++|..
T Consensus 25 ~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 25 DDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHhhcccccccchhh
Confidence 3445555 677777777777777776666665543
No 41
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.82 E-value=1.2e+02 Score=31.04 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=24.7
Q ss_pred CcchHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 008937 458 PSTSIEIKNLREELENVKTRMAEL---QKDYSELQREY 492 (548)
Q Consensus 458 ~~~~rE~~~Lk~el~~mr~rv~eL---Ek~c~~mk~~~ 492 (548)
..+..||+.||.|+..++.++.++ +.|-..+++.+
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356779999999999998888855 45555554443
No 42
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=23.23 E-value=53 Score=28.28 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=13.6
Q ss_pred chhHHHHHHHHhhCC
Q 008937 372 DGLYRAIDTYLKSHP 386 (548)
Q Consensus 372 DgLYRAIDiYLKaHp 386 (548)
-.||-||+-||.-|.
T Consensus 31 PQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHK 45 (82)
T ss_pred hHHHHHHHHHHHHcc
Confidence 479999999999997
No 43
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.00 E-value=1.4e+02 Score=29.02 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=23.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008937 462 IEIKNLREELENVKTRMAELQKDYSELQREYEKLS 496 (548)
Q Consensus 462 rE~~~Lk~el~~mr~rv~eLEk~c~~mk~~~~k~~ 496 (548)
.++..++.|++.++..+.+-|++...||.|.+.+.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666677777777777776654
No 44
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.23 E-value=2.1e+02 Score=23.76 Aligned_cols=35 Identities=31% Similarity=0.567 Sum_probs=27.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008937 463 EIKNLREELENVKTRMAELQKDYSELQREYEKLSN 497 (548)
Q Consensus 463 E~~~Lk~el~~mr~rv~eLEk~c~~mk~~~~k~~~ 497 (548)
++..+..++++++.++.+++.+...++.|+.++..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566777888888888888888888888887764
No 45
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=22.20 E-value=1.4e+02 Score=30.54 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=8.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 008937 462 IEIKNLREELENVKTRMAELQ 482 (548)
Q Consensus 462 rE~~~Lk~el~~mr~rv~eLE 482 (548)
.||+.||..+.+|+..+..|.
T Consensus 18 ~e~~~Lk~kir~le~~l~~Lk 38 (236)
T PF12017_consen 18 IENKKLKKKIRRLEKELKKLK 38 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 46
>PLN03205 ATR interacting protein; Provisional
Probab=21.29 E-value=87 Score=34.91 Aligned_cols=29 Identities=31% Similarity=0.682 Sum_probs=26.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008937 462 IEIKNLREELENVKTRMAELQKDYSELQR 490 (548)
Q Consensus 462 rE~~~Lk~el~~mr~rv~eLEk~c~~mk~ 490 (548)
-|+..||.|++++..++.+.|.+|+.+|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (652)
T PLN03205 134 LEIDRLKKELERVSKQLLDVEQECSQLKK 162 (652)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 47899999999999999999999998764
No 47
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=21.05 E-value=1.2e+02 Score=33.84 Aligned_cols=67 Identities=7% Similarity=0.075 Sum_probs=56.4
Q ss_pred CccccHHHHHhcCCCCCC--CccceEecCCCCChHHHHHHHhhhcCCccccCCcchhHHhhhhhhhcCc
Q 008937 1 MSKCGYIARLELQPSISN--LGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMS 67 (548)
Q Consensus 1 ~SkSg~l~kli~~~~~~~--~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMt 67 (548)
++-|+||.-+....-... +...++|.|=--.+.+|..|-+==|-..|+|.++-|+.+-.||.||...
T Consensus 88 L~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqld 156 (488)
T KOG4682|consen 88 LFQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLD 156 (488)
T ss_pred eeccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHh
Confidence 356899999988654321 3446778888899999999999999999999999999999999999876
No 48
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=21.01 E-value=2.6e+02 Score=23.58 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=30.8
Q ss_pred chHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008937 460 TSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 497 (548)
Q Consensus 460 ~~rE~~~Lk~el~~mr~rv~eLEk~c~~mk~~~~k~~~ 497 (548)
+...+..|+.|++.++.+..+|..+-..++++.+++..
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34567888999999999988888888888888887754
No 49
>PRK15322 invasion protein OrgB; Provisional
Probab=20.73 E-value=2.2e+02 Score=28.91 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=56.7
Q ss_pred cccchhHHHHHHHHHHhhhhhhhh-h--hcchhhHHHHhHHHHHhhHhcCCC--------------------CCChhHHH
Q 008937 301 TMHNIDVVQRIMDYFLMHEQQQQQ-K--QQNMGKTNVSKILDNYLAEVARDP--------------------NLSITKFQ 357 (548)
Q Consensus 301 tlyDVd~V~Riv~~Fl~~~~~~~~-~--~~~~~~~kVakLvD~YLaEiA~D~--------------------nL~~skF~ 357 (548)
.+-|+|...++++.|+..-..... . .-+..-+..+.-+-.||.|..+++ ..+|..|+
T Consensus 88 ~Ld~pd~LL~~le~Wl~~l~~~~~pL~l~lP~~ak~~~~~L~~~l~e~w~~~~~i~yhd~~rFV~~~g~qIaEFsPq~~v 167 (210)
T PRK15322 88 AVDHPETLLTVLDEWLRDFDKPEGQLFLTLPVNAKKDHQKLMVLLMENWPGTFNLKYHQEQRFIMSCGDQIAEFSPEQFV 167 (210)
T ss_pred HccCHHHHHHHHHHHHHhCccccCceeEecChhhhhhHHHHHHHHHHhcCCCeEEEEcCCCceEEEeCCchhccCHHHHH
Confidence 345788999999999985443221 0 112344556666777888866544 46899999
Q ss_pred HHHHh--------cCCccccccchhHHHHHHHHhhC
Q 008937 358 VLAES--------LPENARTCHDGLYRAIDTYLKSH 385 (548)
Q Consensus 358 ~LAea--------lPd~AR~~~DgLYRAIDiYLKaH 385 (548)
+.|+. +|.-+|...||=--|.=-|||.|
T Consensus 168 ~~a~~~l~~~~d~~~~~~r~ls~~~l~al~~~~~~~ 203 (210)
T PRK15322 168 ETAVGVIKHHLDELPQDCRTISDNAINALIDEWKTK 203 (210)
T ss_pred HHHHHHHHhCccchHHHHHHHhHHHHHHHHHHHHHh
Confidence 99986 55566777776666666666666
No 50
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=20.56 E-value=2.1e+02 Score=21.81 Aligned_cols=12 Identities=42% Similarity=0.711 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 008937 466 NLREELENVKTR 477 (548)
Q Consensus 466 ~Lk~el~~mr~r 477 (548)
++|.||++||..
T Consensus 15 EvrkEl~K~K~E 26 (40)
T PF08776_consen 15 EVRKELQKVKEE 26 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 51
>PRK10722 hypothetical protein; Provisional
Probab=20.40 E-value=7.9e+02 Score=25.62 Aligned_cols=109 Identities=20% Similarity=0.321 Sum_probs=69.5
Q ss_pred CChhHHHHHHHhcCCccccccchhHHHHHHHHhhCCCCCHHHhhhhhcccccCCCCHHHhHHHhhCCCCCchHHHHHHHH
Q 008937 351 LSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFS 430 (548)
Q Consensus 351 L~~skF~~LAealPd~AR~~~DgLYRAIDiYLKaHp~lse~Er~~lCr~mdcqKLS~EAc~HAaQNeRLPlr~vVQvLf~ 430 (548)
|.+..-...|..+|+. .-.+.+++|| |=+|+..|-.||..+=--+|...+..- -+||-..|++--
T Consensus 88 L~~~ear~ea~~~~~~--~w~~afkq~I---LL~~a~~t~~err~~l~rl~~~~~~~p----------~~lrPL~qlwr~ 152 (247)
T PRK10722 88 LMPAQARAQAKRLPDD--SWQNAFKQGI---LLADAKITPAERRQIVERLNAYSLQIP----------AQVRPLYQLWRD 152 (247)
T ss_pred cCHHHHHHHHHhcCCC--CHHHHHHHHH---HHcCCCCChHHHHHHHHHHhhcccccc----------hhhhHHHHHHHH
Confidence 3344445555566633 3456677775 458888889999998777776654432 367778888877
Q ss_pred HhhhhhhccccCCCCccCCCCCCCCCCCcchHHHh---HH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008937 431 EQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIK---NL----REELENVKTRMAELQKDYSELQREYEKLS 496 (548)
Q Consensus 431 eQl~lr~~~~~~~~~~~~~~~~~~~~~~~~~rE~~---~L----k~el~~mr~rv~eLEk~c~~mk~~~~k~~ 496 (548)
+|...=+ +..|.. .| -.+++++|....+||.+.....+.+|.++
T Consensus 153 ~Q~l~l~----------------------LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLT 203 (247)
T PRK10722 153 GQALQLA----------------------LAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLT 203 (247)
T ss_pred hhHHHHh----------------------HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7663211 111211 22 34688888888888888887777666665
No 52
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.20 E-value=1.3e+02 Score=30.34 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=25.2
Q ss_pred HhHHHhhCCCCCchHHHHHHHHHhhhhhhcccc
Q 008937 409 ACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQE 441 (548)
Q Consensus 409 Ac~HAaQNeRLPlr~vVQvLf~eQl~lr~~~~~ 441 (548)
-|.|-++|.-..++.-++-+..+.-+++..+..
T Consensus 13 ~C~~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 13 YCANCVNNRLLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888887788888888888777777665443
No 53
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=20.18 E-value=2.1e+02 Score=24.74 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=27.2
Q ss_pred cchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008937 459 STSIEIKNLREELENVKTRMAELQKDYSELQRE 491 (548)
Q Consensus 459 ~~~rE~~~Lk~el~~mr~rv~eLEk~c~~mk~~ 491 (548)
.+.+++.+|+..|+.|-.||.+.+.+|..+++|
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~E 52 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888999999999999888888655
No 54
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=20.18 E-value=77 Score=26.05 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=18.6
Q ss_pred chhHHHHHHHHhhCCCCCHHHhhhh
Q 008937 372 DGLYRAIDTYLKSHPSLSEHDRRRL 396 (548)
Q Consensus 372 DgLYRAIDiYLKaHp~lse~Er~~l 396 (548)
|+.|.| .+.+|.+||++|-..+
T Consensus 11 D~fY~~---Li~aH~gLs~e~S~~l 32 (60)
T PF10932_consen 11 DDFYEA---LIEAHRGLSDEQSAAL 32 (60)
T ss_pred hHHHHH---HHHHHhCCCHHHHHHH
Confidence 999998 5899999999986544
No 55
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=20.04 E-value=1.2e+02 Score=36.81 Aligned_cols=86 Identities=22% Similarity=0.420 Sum_probs=54.5
Q ss_pred ccccHHHHHhcCCCCC------------CCccceEecCCCCChHHHHHHHhhhcCCccccCCcchhHHhhhhhhhcCccc
Q 008937 2 SKCGYIARLELQPSIS------------NLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEE 69 (548)
Q Consensus 2 SkSg~l~kli~~~~~~------------~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~ 69 (548)
+||..||||+..-.++ ...++|.+.|+|| ..||+...|-|--. -+.|.--=-.-|.+- +
T Consensus 579 ~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p--~mfe~lL~~iYtdt-~~~P~heDdidci~f------s 649 (1267)
T KOG0783|consen 579 ARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPP--LMFEILLHYIYTDT-LLSPWHEDDIDCIRF------S 649 (1267)
T ss_pred eccHHHHHHHHhhccccccceeeeecccccCceeeeccCCH--HHHHHHHHHHhccc-ccCCccccchhhhhc------c
Confidence 6889999999754332 1356777899995 78999999999764 345521111122211 1
Q ss_pred ccCCchHHHHHHHhhhhhcCChHHHHHHHhhcccccchhhhhhhHH
Q 008937 70 YEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVR 115 (548)
Q Consensus 70 ~~~~NLi~ktE~FL~~~vl~sW~dsi~vLksce~llp~aE~l~iv~ 115 (548)
..+.|+..|| ++||-|.|.+|..++++
T Consensus 650 ~~k~N~~qrt-------------------rtCeMl~~~lekf~l~e 676 (1267)
T KOG0783|consen 650 PLKENLSQRT-------------------RTCEMLANLLEKFHLAE 676 (1267)
T ss_pred ccccChhhcc-------------------cHHHHHHHHHhhhhHHh
Confidence 2355666533 57888888888777654
Done!