BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008939
(548 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 306 AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365
FS DG +A+ G D L+VF + + K++ +LCCA+S D YI T D V
Sbjct: 629 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 688
Query: 366 QVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425
++W K+V + H+ V+ F T ++ + D L LWDL
Sbjct: 689 KIWDSATGKLVHTYDEHSEQVNCCHF-----------TNKSNHLLLATGSNDFFLKLWDL 737
Query: 426 EMDE 429
E
Sbjct: 738 NQKE 741
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 292 IARWHIC-QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWS 350
I R C QG++ S A S+D T ++ D +++ + + K + G + C A+S
Sbjct: 1084 IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS 1143
Query: 351 MDGKYILTGGEDDLVQVWSMEDRKV------VAWGEG---HNSWVSGVAF 391
+DG + TG ++ +++W++ D ++ ++ EG H WV+ V F
Sbjct: 1144 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1193
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL- 357
+ + AFS+D +Y+AT D ++++D + +L+ + + CC ++ ++L
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 358 -TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF---DSYWSQPNSDGT 403
TG D +++W + ++ GH + V+ F D + ++DGT
Sbjct: 724 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 773
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 55/147 (37%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDY--SKEQLICGGKSYYGA-----------LLC 346
S+N FS D LA+ DG LR++D + E+ K ++ + + C
Sbjct: 751 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC 810
Query: 347 CAWSMDGKYILTGGEDDL------------------------------------------ 364
C+WS DG I+ ++ +
Sbjct: 811 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC 870
Query: 365 VQVWSMEDRKVVAWGEGHNSWVSGVAF 391
V++W+++ R VA GH SWV GV F
Sbjct: 871 VELWNIDSRLKVADCRGHLSWVHGVMF 897
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 35/71 (49%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ ++ S Y+A DG +++ + ++ G + A+ ++ DGK +++
Sbjct: 968 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1027
Query: 359 GGEDDLVQVWS 369
ED ++QVW+
Sbjct: 1028 SSEDSVIQVWN 1038
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 346 CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
CC S +Y+ G ED +++ + + +V + G GH V + F
Sbjct: 973 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF 1018
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 306 AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365
FS DG +A+ G D L+VF + + K++ +LCCA+S D YI T D V
Sbjct: 622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 681
Query: 366 QVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425
++W K+V + H+ V+ F T ++ + D L LWDL
Sbjct: 682 KIWDSATGKLVHTYDEHSEQVNCCHF-----------TNKSNHLLLATGSNDFFLKLWDL 730
Query: 426 EMDE 429
E
Sbjct: 731 NQKE 734
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 292 IARWHIC-QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWS 350
I R C QG++ S A S+D T ++ D +++ + + K + G + C A+S
Sbjct: 1077 IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS 1136
Query: 351 MDGKYILTGGEDDLVQVWSMEDRKV------VAWGEG---HNSWVSGVAF 391
+DG + TG ++ +++W++ D ++ ++ EG H WV+ V F
Sbjct: 1137 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1186
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL- 357
+ + AFS+D +Y+AT D ++++D + +L+ + + CC ++ ++L
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 358 -TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF---DSYWSQPNSDGT 403
TG D +++W + ++ GH + V+ F D + ++DGT
Sbjct: 717 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 55/147 (37%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDY--SKEQLICGGKSYYGA-----------LLC 346
S+N FS D LA+ DG LR++D + E+ K ++ + + C
Sbjct: 744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC 803
Query: 347 CAWSMDGKYILTGGEDDL------------------------------------------ 364
C+WS DG I+ ++ +
Sbjct: 804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC 863
Query: 365 VQVWSMEDRKVVAWGEGHNSWVSGVAF 391
V++W+++ R VA GH SWV GV F
Sbjct: 864 VELWNIDSRLKVADCRGHLSWVHGVMF 890
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 35/71 (49%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ ++ S Y+A DG +++ + ++ G + A+ ++ DGK +++
Sbjct: 961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020
Query: 359 GGEDDLVQVWS 369
ED ++QVW+
Sbjct: 1021 SSEDSVIQVWN 1031
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 346 CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
CC S +Y+ G ED +++ + + +V + G GH V + F
Sbjct: 966 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF 1011
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 306 AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365
FS DG +A+ G D L+VF + + K++ +LCCA+S D ++I T D V
Sbjct: 628 CFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKV 687
Query: 366 QVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425
++W+ ++V + H+ V+ F + ++ ++ GS D L LWDL
Sbjct: 688 KIWNSMTGELVHTYDEHSEQVNCCHFTN---------SSHHLLLATGS--SDCFLKLWDL 736
Query: 426 EMDE 429
E
Sbjct: 737 NQKE 740
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 55/147 (37%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYS--KEQLICGGKSYYGAL-----------LC 346
S+N FS D LA+ DG L+++D + E+ K ++ L C
Sbjct: 750 NSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKC 809
Query: 347 CAWSMDGKYILTGGEDDL------------------------------------------ 364
C+WS DG I+ ++ +
Sbjct: 810 CSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYC 869
Query: 365 VQVWSMEDRKVVAWGEGHNSWVSGVAF 391
V++W+ + R VA GH SWV GV F
Sbjct: 870 VELWNTDSRSKVADCRGHLSWVHGVMF 896
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/213 (18%), Positives = 84/213 (39%), Gaps = 23/213 (10%)
Query: 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNL 255
+ +VY + Q Q+V ++ NK N SR + P D + ++
Sbjct: 578 ETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSR---LVVRPHTDAVYHACFSEDG- 633
Query: 256 YVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLA 315
++ D + V K +T + + + + AFSTD ++A
Sbjct: 634 ---QRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLC-----------CAFSTDDRFIA 679
Query: 316 TVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL--TGGEDDLVQVWSMEDR 373
T D +++++ +L+ + + CC ++ ++L TG D +++W + +
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK 739
Query: 374 KVVAWGEGHNSWVSGVAF---DSYWSQPNSDGT 403
+ GH + V+ F D + ++DGT
Sbjct: 740 ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGT 772
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
QG++ S S D T ++ D +++ + + + + G + C A+S+D + T
Sbjct: 1091 QGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLAT 1150
Query: 359 GGEDDLVQVWSMEDRKVVAWG-----EG---HNSWVSGVAF 391
G ++ +++W++ + +++ EG H WV+ + F
Sbjct: 1151 GDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCF 1191
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL--ICGGKSYYGALLCCAW------SM 351
G + AFS D T LAT +G +R+++ S +L +C S GA W S
Sbjct: 1134 GCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSP 1193
Query: 352 DGKYILTGG 360
DGK +++ G
Sbjct: 1194 DGKMLISAG 1202
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I SIA+S DG YLA+ DG + +FD + +L+ + + + +S D + ++T +
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
D ++++ ++ + GH SWV VAF
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 304 SIAFSTDGTYLATVGRDGYLRVF--DYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
++AFS D YLAT G + +F + K++ + + +L A+S DGKY+ +G
Sbjct: 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF--ILSIAYSPDGKYLASGAI 184
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
D ++ ++ + K++ EGH + + F
Sbjct: 185 DGIINIFDIATGKLLHTLEGHAMPIRSLTF 214
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 31/140 (22%)
Query: 329 SKEQLICGGKSYYG-----------ALLCCAWSMDGK----YILTGGEDDLVQVWSMEDR 373
S+E L G + YG A+ AW + K ++TG DDLV+VW D
Sbjct: 9 SRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE 68
Query: 374 KV-VAWG-EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 431
++ + W EGH V V+ D + P + S D + LWDLE + +
Sbjct: 69 RLDLQWSLEGHQLGV--VSVDISHTLPIA-----------ASSSLDAHIRLWDLENGKQI 115
Query: 432 VPLRRGPLGG-SPTFSTGSQ 450
+ GP+ + FS SQ
Sbjct: 116 KSIDAGPVDAWTLAFSPDSQ 135
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I S+ FS D L T DGY++++D L + +L A+ D + ++
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421
D V+VW + R V H V GV + N +G+ + SVG D +
Sbjct: 269 DKSVKVWDVGTRTCVHTFFDHQDQVWGVKY-------NGNGS------KIVSVGDDQEIH 315
Query: 422 LWD 424
++D
Sbjct: 316 IYD 318
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 27/195 (13%)
Query: 319 RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW 378
RD LRV+D Q + + A+ C + DG+ +++G D +V+VW E +
Sbjct: 217 RDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 274
Query: 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438
+GH + V + FD + GS+ DT + +WD+E +
Sbjct: 275 LQGHTNRVYSLQFDG-------------IHVVSGSL--DTSIRVWDVETGNCI-----HT 314
Query: 439 LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPK---LSPLVAHRVHTEPLSGLIFTQ 495
L G + ++G + DN+ G + D+ L L H ++ L F +
Sbjct: 315 LTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 372
Query: 496 ESVLTVCREGHIKIW 510
V+T +G +K+W
Sbjct: 373 NFVITSSDDGTVKLW 387
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 27/174 (15%)
Query: 296 HICQGSINSI-AFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSM 351
H QG N + + DG ++ + D +RV+D I G +S + +
Sbjct: 273 HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM-----EL 327
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEG---HNSWVSGVAFDSYWSQPNSDGTAETVM 408
+++G D V++W ++ + + +G H S V+ + F+ + +SD
Sbjct: 328 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD------- 380
Query: 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 462
D + LWDL+ E + L GGS ++++ VC VG+
Sbjct: 381 --------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 426
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 16/137 (11%)
Query: 304 SIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAW---SMDGKYILTGG 360
S+AFS D + + GRD LRV++ E + + + + C S+D I++GG
Sbjct: 114 SVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGG 173
Query: 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRL 420
D+LV+VW + ++V +GH ++V+ V + DG+ S +D
Sbjct: 174 WDNLVKVWDLATGRLVTDLKGHTNYVTSVTV-------SPDGSL------CASSDKDGVA 220
Query: 421 LLWDLEMDEIVVPLRRG 437
LWDL E + + G
Sbjct: 221 RLWDLTKGEALSEMAAG 237
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
++ +A S +G + + D LR+++ Q + +L A+S D + I++GG
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 362 DDLVQVWSMEDRKVVAWGEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRL 420
D+ ++VW+++ + G H WVS V F P+ D S G D +
Sbjct: 130 DNALRVWNVKGECMHTLSRGAHTDWVSCVRF-----SPSLDAPV------IVSGGWDNLV 178
Query: 421 LLWDLEMDEIVVPLR 435
+WDL +V L+
Sbjct: 179 KVWDLATGRLVTDLK 193
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC-------GGKSYYGALLCCAWSMDGK 354
IN I FS + ++ G +R+FD + +I G K + AWS DG
Sbjct: 240 INQICFSPNRYWMCAATEKG-IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGS 298
Query: 355 YILTGGEDDLVQVWSMED 372
+ +G D++++VW + +
Sbjct: 299 TLYSGYTDNVIRVWGVSE 316
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 276
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED+LV +W+++ +++V +GH V A
Sbjct: 277 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ K + H+ VS V F+
Sbjct: 150 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 180
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 174 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 230
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 231 AATLDNTLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 280
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 281 NLVYIWNLQTKEIVQKLQ 298
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Query: 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408
+S +G+++ + D L+++W D K GH +S VA WS ++
Sbjct: 53 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN-------- 100
Query: 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPS 468
S D L +WD+ + + L+ G + N+ G+ +
Sbjct: 101 -LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 469 MRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
+ DV L H++P+S + F ++ L V +G +IW
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 278
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED+LV +W+++ +++V +GH V A
Sbjct: 279 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 310
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 151
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ K + H+ VS V F+
Sbjct: 152 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 182
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 176 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 232
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 233 AATLDNTLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 282
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 283 NLVYIWNLQTKEIVQKLQ 300
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Query: 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408
+S +G+++ + D L+++W D K GH +S VA WS ++
Sbjct: 55 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN-------- 102
Query: 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPS 468
S D L +WD+ + + L+ G + N+ G+ +
Sbjct: 103 -LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVR 156
Query: 469 MRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
+ DV L H++P+S + F ++ L V +G +IW
Sbjct: 157 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED+LV +W+++ +++V +GH V A
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ K + H+ VS V F+
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 264
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 265 NLVYIWNLQTKEIVQKLQ 282
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Query: 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408
+S +G+++ + D L+++W D K GH +S VA WS ++
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN-------- 84
Query: 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPS 468
S D L +WD+ + + L+ G + N+ G+ +
Sbjct: 85 -LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 469 MRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
+ DV L H++P+S + F ++ L V +G +IW
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 271
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED+LV +W+++ +++V +GH V A
Sbjct: 272 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 303
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ K + H+ VS V F+
Sbjct: 145 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 175
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Query: 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408
+S +G+++ + D L+++W D K GH +S VA WS ++
Sbjct: 48 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN-------- 95
Query: 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPS 468
S D L +WD+ + + L+ G + N+ G+ +
Sbjct: 96 -LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 469 MRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
+ DV L H++P+S + F ++ L V +G +IW
Sbjct: 150 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 169 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 225
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 226 AATLDNTLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 275
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 276 NLVYIWNLQTKEIVQKLQ 293
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED+LV +W+++ +++V +GH V A
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ K + H+ VS V F+
Sbjct: 128 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 20/163 (12%)
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409
S +G+++ + D L+++W D K GH +S VA WS ++
Sbjct: 32 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN--------- 78
Query: 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSM 469
S D L +WD+ + + L+ G + N+ G+ + +
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 470 RDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
DV L H++P+S + F ++ L V +G +IW
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 209 AATLDNTLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 258
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 259 NLVYIWNLQTKEIVQKLQ 276
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED+LV +W+++ +++V +GH V A
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ K + H+ VS V F+
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 264
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 265 NLVYIWNLQTKEIVQKLQ 282
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 20/163 (12%)
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409
S +G+++ + D L+++W D K GH +S VA WS ++
Sbjct: 38 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN--------- 84
Query: 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSM 469
S D L +WD+ + + L+ G + N+ G+ + +
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 470 RDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
DV L H++P+S + F ++ L V +G +IW
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED+LV +W+++ +++V +GH V A
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ K + H+ VS V F+
Sbjct: 128 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 20/163 (12%)
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409
S +G+++ + D L+++W D K GH +S VA WS ++
Sbjct: 32 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN--------- 78
Query: 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSM 469
S D L +WD+ + + L+ G + N+ G+ + +
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 470 RDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
DV L H++P+S + F ++ L V +G +IW
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 209 AATLDNTLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 258
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 259 NLVYIWNLQTKEIVQKLQ 276
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 250
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED+LV +W+++ +++V +GH V A
Sbjct: 251 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 282
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ K + H+ VS V F+
Sbjct: 124 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 154
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 20/163 (12%)
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409
S +G+++ + D L+++W D K GH +S VA WS ++
Sbjct: 28 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN--------- 74
Query: 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSM 469
S D L +WD+ + + L+ G + N+ G+ + +
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 470 RDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
DV L H++P+S + F ++ L V +G +IW
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 148 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 204
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 205 AATLDNTLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 254
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 255 NLVYIWNLQTKEIVQKLQ 272
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 255
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED+LV +W+++ +++V +GH V A
Sbjct: 256 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 287
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ K + H+ VS V F+
Sbjct: 129 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 159
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 20/163 (12%)
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409
S +G+++ + D L+++W D K GH +S VA WS ++
Sbjct: 33 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN--------- 79
Query: 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSM 469
S D L +WD+ + + L+ G + N+ G+ + +
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 470 RDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
DV L H++P+S + F ++ L V +G +IW
Sbjct: 135 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 153 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 209
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 210 AATLDNTLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 259
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 260 NLVYIWNLQTKEIVQKLQ 277
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED+LV +W+++ +++V +GH V A
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ K + H+ VS V F+
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 20/163 (12%)
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409
S +G+++ + D L+++W D K GH +S VA WS ++
Sbjct: 38 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN--------- 84
Query: 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSM 469
S D L +WD+ + + L+ G + N+ G+ + +
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 470 RDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
DV L H++P+S + F ++ L V +G +IW
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 264
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 265 NLVYIWNLQTKEIVQKLQ 282
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 253
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED+LV +W+++ +++V +GH V A
Sbjct: 254 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 285
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ K + H+ VS V F+
Sbjct: 127 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 157
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 20/163 (12%)
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409
S +G+++ + D L+++W D K GH +S VA WS ++
Sbjct: 31 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN--------- 77
Query: 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSM 469
S D L +WD+ + + L+ G + N+ G+ + +
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 470 RDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
DV L H++P+S + F ++ L V +G +IW
Sbjct: 133 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 151 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 207
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 208 AATLDNTLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 257
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 258 NLVYIWNLQTKEIVQKLQ 275
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 259
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED+LV +W+++ +++V +GH V A
Sbjct: 260 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 291
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ K + H+ VS V F+
Sbjct: 133 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 163
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 20/163 (12%)
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409
S +G+++ + D L+++W D K GH +S VA WS ++
Sbjct: 37 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN--------- 83
Query: 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSM 469
S D L +WD+ + + L+ G + N+ G+ + +
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 470 RDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
DV L H++P+S + F ++ L V +G +IW
Sbjct: 139 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 157 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 213
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 214 AATLDNTLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 263
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 264 NLVYIWNLQTKEIVQKLQ 281
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED+LV +W+++ +++V +GH V A
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ K + H+ VS V F+
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Query: 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408
+S +G+++ + D L+++W D K GH +S VA WS ++
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN-------- 81
Query: 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPS 468
S D L +WD+ + + L+ G + N+ G+ +
Sbjct: 82 -LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 469 MRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
+ DV L H++P+S + F ++ L V +G +IW
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 261
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 262 NLVYIWNLQTKEIVQKLQ 279
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED+LV +W+++ +++V +GH V A
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ K + H+ VS V F+
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Query: 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408
+S +G+++ + D L+++W D K GH +S VA WS ++
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN-------- 81
Query: 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPS 468
S D L +WD+ + + L+ G + N+ G+ +
Sbjct: 82 -LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 469 MRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
+ DV L H++P+S + F ++ L V +G +IW
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 261
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 262 NLVYIWNLQTKEIVQKLQ 279
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED+LV +W+++ +++V +GH V A
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ K + H+ VS V F+
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 20/163 (12%)
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409
S +G+++ D L+++W D K GH +S VA WS ++
Sbjct: 35 SPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN--------- 81
Query: 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSM 469
S D L +WD+ + + L+ G + N+ G+ + +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 470 RDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
DV L H++P+S + F ++ L V +G +IW
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 261
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 262 NLVYIWNLQTKEIVQKLQ 279
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED++V +W+++ +++V +GH V A
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ + H+ VS V F+
Sbjct: 131 DESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 261
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 262 NMVYIWNLQTKEIVQKLQ 279
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 20/163 (12%)
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409
S +G+++ + D L+++W D K GH +S VA WS ++
Sbjct: 35 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN--------- 81
Query: 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSM 469
S D L +WD+ + + L+ G + N+ G+ + +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 470 RDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
DV L H++P+S + F ++ L V +G +IW
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILT 358
++ + FS +G Y+ D L+++DYSK + + G K+ + GK+I++
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
G ED++V +W+++ +++V +GH V A
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I+ +A+S+D L + D L+++D S + + K + + CC ++ I++G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
D+ V++W ++ + H+ VS V F+
Sbjct: 131 DESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 20/163 (12%)
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409
S +G+++ + D L+++W D K GH +S VA WS ++
Sbjct: 35 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA----WSSDSN--------- 81
Query: 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSM 469
S D L +WD+ + + L+ G + N+ G+ + +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 470 RDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR--EGHIKIW 510
DV L H++P+S + F ++ L V +G +IW
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWSMDGKYIL 357
++++ F+ DG+ + + DG R++D + Q + K+ + +S +GKYIL
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D+ +++W K + GH + + Y N T + S +D
Sbjct: 212 AATLDNDLKLWDYSKGKCLKTYTGHKN-------EKYCIFANFSVTGGKWIV---SGSED 261
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L+ EIV L+
Sbjct: 262 NMVYIWNLQTKEIVQKLQ 279
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 19/96 (19%)
Query: 305 IAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA------------------LLC 346
+ FS DG YLAT G + +V+ S L+ A +
Sbjct: 70 VKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 128
Query: 347 CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH 382
+S DGK++ TG ED L+++W +E+RK+V +GH
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH 164
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I S+ FS DG +LAT D +R++D +++ + + + + G +++G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 362 DDLVQVWSME 371
D V++W +
Sbjct: 186 DRTVRIWDLR 195
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 13/135 (9%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360
S+ I+F G LA+ D ++++D+ + I + + + +G +I++
Sbjct: 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 211
Query: 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRL 420
D +++W ++ V GH WV V +PN DGT S D +
Sbjct: 212 RDKTIKMWEVQTGYCVKTFTGHREWVRMV-------RPNQDGTL------IASCSNDQTV 258
Query: 421 LLWDLEMDEIVVPLR 435
+W + E LR
Sbjct: 259 RVWVVATKECKAELR 273
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 20/104 (19%)
Query: 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD----------------- 352
DGT +A+ D +RV+ + ++ + + + C +W+ +
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 304
Query: 353 ---GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393
G ++L+G D +++W + + GH++WV GV F S
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 348
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
+ + F + G ++ + D LRV+DY ++ + ++ + + Y++TG
Sbjct: 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400
Query: 362 DDLVQVW 368
D V+VW
Sbjct: 401 DQTVKVW 407
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/81 (19%), Positives = 39/81 (48%)
Query: 311 GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM 370
G +L + RD ++++D S + + + + GK+IL+ +D ++VW
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 371 EDRKVVAWGEGHNSWVSGVAF 391
++++ + H +V+ + F
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDF 388
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 270 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS 329
+ + KD + VA R + + + + S+DG + + DG LR++D +
Sbjct: 410 WKLTKDDKAYGVAQRRLTGHSHF---------VEDVVLSSDGQFALSGSWDGELRLWDLA 460
Query: 330 KEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR---KVVAWGEGHNSWV 386
+ +L A+S+D + I++ D +++W+ + GEGH WV
Sbjct: 461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520
Query: 387 SGVAFDSYWSQP 398
S V F QP
Sbjct: 521 SCVRFSPNTLQP 532
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 18/127 (14%)
Query: 304 SIAFSTDGTYLATVGRDGYLRVFDY---SKEQLICGGKSYYGALLCCAWSMDG--KYILT 358
S+AFS D + + RD +++++ K + GG+ + + C +S + I++
Sbjct: 477 SVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS 536
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
D V+VW++ + K+ + GH +VS VA + DG+ S G+D
Sbjct: 537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAV-------SPDGSL------CASGGKDG 583
Query: 419 RLLLWDL 425
+LLWDL
Sbjct: 584 VVLLWDL 590
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 16/84 (19%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA-------LLCCAWSMD 352
G ++++A S DG+ A+ G+DG + ++D ++ GK Y LC +
Sbjct: 562 GYVSTVAVSPDGSLCASGGKDGVVLLWDLAE------GKKLYSLEANSVIHALCFS---P 612
Query: 353 GKYILTGGEDDLVQVWSMEDRKVV 376
+Y L + +++W +E + +V
Sbjct: 613 NRYWLCAATEHGIKIWDLESKSIV 636
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360
S+ +AFS DG +A+ D +++++ + QL+ + ++ A+S DG+ I +
Sbjct: 18 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASAS 76
Query: 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
+D V++W+ + +++ GH+S V GVAF
Sbjct: 77 DDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 106
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360
S+N +AF DG +A+ D +++++ + QL+ + ++ A+S DG+ I +
Sbjct: 264 SVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASAS 322
Query: 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
+D V++W+ + + GH+S V GVAF
Sbjct: 323 DDKTVKLWNRNGQHLQTL-TGHSSSVWGVAF 352
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360
S+ +AFS DG +A+ D +++++ + QL+ + ++ A+S DG+ I +
Sbjct: 100 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASAS 158
Query: 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
+D V++W+ + +++ GH+S V GVAF
Sbjct: 159 DDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF 188
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360
S+ +AFS DG +A+ D +++++ + QL+ + ++ A+S DG+ I +
Sbjct: 469 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASAS 527
Query: 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
+D V++W+ + +++ GH+S V GVAF
Sbjct: 528 DDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF 557
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360
S+ +AFS DG +A+ D +++++ + QL+ + ++ A+S DG+ I +
Sbjct: 141 SVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASAS 199
Query: 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
+D V++W+ + +++ GH+S V GVAF
Sbjct: 200 DDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 229
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKE--QLICGGKSYYGALLCCAWSMDGKYILT 358
S+ +AFS DG +A+ D +++++ + + Q + G + ++ A+S DG+ I +
Sbjct: 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTG---HSSSVWGVAFSPDGQTIAS 361
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
+D V++W+ + +++ GH+S V GVAF
Sbjct: 362 ASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 393
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360
S+ +AFS DG +A+ D +++++ + QL+ + ++ A+S D + I +
Sbjct: 387 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASAS 445
Query: 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
+D V++W+ + +++ GH+S V GVAF
Sbjct: 446 DDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 475
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360
S+ +AFS DG +A+ D +++++ + QL+ + ++ A+ DG+ I +
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Query: 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
+D V++W+ + +++ GH+S V GVAF
Sbjct: 282 DDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF 311
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360
S+ +AFS DG +A+ D +++++ + QL+ + ++ A+S DG+ I +
Sbjct: 510 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASAS 568
Query: 361 EDDLVQVW 368
D V++W
Sbjct: 569 SDKTVKLW 576
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
++ +A S + + + D LR++D + + A+S D + IL+ G
Sbjct: 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA 138
Query: 362 DDLVQVWSM--EDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR 419
+ +++W++ E + A E H+ WVS V + N + F SVG D R
Sbjct: 139 EREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANK---VQPFAPYFASVGWDGR 195
Query: 420 LLLWD 424
L +W+
Sbjct: 196 LKVWN 200
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 313 YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM 370
Y A+VG DG L+V++ + Q+ K++ + + S +GKYI TGG+D + +W +
Sbjct: 186 YFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411
DG ++GG+D V+VW + + V+ H+S V+ VA + P D F
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA-----ACPGKDTI-------F 197
Query: 412 GSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHW----DNVCPVGTLQPAP 467
S G+D R+LLWD + P R S T T S W D+ G
Sbjct: 198 LSCGEDGRILLWDTRKPK---PATRIDFCASDTIPT---SVTWHPEKDDTFACGDETGNV 251
Query: 468 SMRDVPKLSPLVAHRVHTEPLSGLIFTQES 497
S+ ++ VH++ ++GL ++ S
Sbjct: 252 SLVNIKNPDSAQTSAVHSQNITGLAYSYHS 281
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 32/150 (21%)
Query: 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY---------SKSNPIARWHICQGS-- 301
G+++V+ K +GA + S QT+ V + S S + W I +
Sbjct: 70 GSIWVF-KDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESL 128
Query: 302 -------------INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY--YGALLC 346
+ +++ +DGT + G+D ++V+D S++ ++ KSY + + +
Sbjct: 129 LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL---KSYNAHSSEVN 185
Query: 347 CAWSMDGK--YILTGGEDDLVQVWSMEDRK 374
C + GK L+ GED + +W K
Sbjct: 186 CVAACPGKDTIFLSCGEDGRILLWDTRKPK 215
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 54/205 (26%)
Query: 230 NSRCTSVTWVPGGDGAFV-VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288
NS C +++ D FV VG D ++VY+ S GA S I HP
Sbjct: 450 NSSCVALS----NDKQFVAVGGQDSKVHVYKLS--GASVSEVKTI--------VHP---- 491
Query: 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK----EQLICGGKSYYGA- 343
I S+AFS +G +L V D +V YS E +++ A
Sbjct: 492 -----------AEITSVAFSNNGAFL--VATDQSRKVIPYSVANNFELAHTNSWTFHTAK 538
Query: 344 LLCCAWSMDGKYILTGGEDDLVQVWSME---DRKVVAWGEGHNSWVSGVAFDSYWSQPNS 400
+ C +WS D + TG D+ V VW+M D ++ G S V+ V W
Sbjct: 539 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV----IWLN--- 591
Query: 401 DGTAETVMYRFGSVGQDTRLLLWDL 425
ET + S GQD+ + W++
Sbjct: 592 ----ETTIV---SAGQDSNIKFWNV 609
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVF---DYSK----EQLICGGKSYYGALLCCAWSMDGK 354
++S+ ++ DG+ A+ G DG + ++ D +K E ++ G++ WS DG
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252
Query: 355 YILTGGEDDLVQVWSMEDRKV 375
I + D +++W++ KV
Sbjct: 253 KIASASADKTIKIWNVATLKV 273
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412
G ++G +D ++VW + + V++ H + V+ VA + P+ D F
Sbjct: 139 GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVA-----ASPHKDSV-------FL 186
Query: 413 SVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHW----DNVCPVGTLQPAPS 468
S +D R+LLWD + + G PT S W V G S
Sbjct: 187 SCSEDNRILLWDTRCPKPASQIGCSAPGYLPT------SLAWHPQQSEVFVFGDENGTVS 240
Query: 469 MRDVPKLSPLVAHRVHTEPLSGLIFTQESV 498
+ D S +++ VH++ ++GL+F+ SV
Sbjct: 241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSV 270
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFD---------YSKEQLICGGKSYYGALLCCAW 349
+ IN+I F +G AT D R+FD YS + +ICG S ++
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV-------SF 278
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 387
S G+ +L G +D VW GH++ VS
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I ++ + TD L + +DG L ++D + ++ CA++ G Y+ GG
Sbjct: 58 IYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 362 DDLVQVWSMEDR----KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D++ +++++ R +V GH ++S F S G D
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--------------D 163
Query: 418 TRLLLWDLE 426
T LWD+E
Sbjct: 164 TTCALWDIE 172
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFD---------YSKEQLICGGKSYYGALLCCAW 349
+ IN+I F +G AT D R+FD YS + +ICG S ++
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV-------SF 278
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 387
S G+ +L G +D VW GH++ VS
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I ++ + TD L + +DG L ++D + ++ CA++ G Y+ GG
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 362 DDLVQVWSMEDR----KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D++ +++++ R +V GH ++S F S G D
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--------------D 163
Query: 418 TRLLLWDLE 426
T LWD+E
Sbjct: 164 TTCALWDIE 172
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFD---------YSKEQLICGGKSYYGALLCCAW 349
+ IN+I F +G AT D R+FD YS + +ICG S ++
Sbjct: 237 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV-------SF 289
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 387
S G+ +L G +D VW GH++ VS
Sbjct: 290 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 327
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I ++ + TD L + +DG L ++D + ++ CA++ G Y+ GG
Sbjct: 69 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 128
Query: 362 DDLVQVWSMEDR----KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D++ +++++ R +V GH ++S F S G D
Sbjct: 129 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--------------D 174
Query: 418 TRLLLWDLE 426
T LWD+E
Sbjct: 175 TTCALWDIE 183
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFD---------YSKEQLICGGKSYYGALLCCAW 349
+ IN+I F +G AT D R+FD YS + +ICG S ++
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV-------SF 278
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 387
S G+ +L G +D VW GH++ VS
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I ++ + TD L + +DG L ++D + ++ CA++ G Y+ GG
Sbjct: 58 IYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 362 DDLVQVWSMEDR----KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D++ +++++ R +V GH ++S F S G D
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--------------D 163
Query: 418 TRLLLWDLE 426
T LWD+E
Sbjct: 164 TTCALWDIE 172
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFD---------YSKEQLICGGKSYYGALLCCAW 349
+ IN+I F +G AT D R+FD YS + +ICG S ++
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV-------SF 278
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 387
S G+ +L G +D VW GH++ VS
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361
I ++ + TD L + +DG L ++D + ++ CA++ G Y+ GG
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 362 DDLVQVWSMEDR----KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D++ +++++ R +V GH ++S F S G D
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--------------D 163
Query: 418 TRLLLWDLE 426
T LWD+E
Sbjct: 164 TTCALWDIE 172
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 12/135 (8%)
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355
HI Q + DG Y + D LR++D + + + ++
Sbjct: 66 HIVQ----DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415
I++G D ++VW+++ + +A GHN WVS V PN ++V S G
Sbjct: 122 IISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRV-----VPNEKADDDSVT--IISAG 173
Query: 416 QDTRLLLWDLEMDEI 430
D + W+L +I
Sbjct: 174 NDKMVKAWNLNQFQI 188
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA--------LLCCAW 349
Q + S+AFS + +LA G ++VF + L+ + + + AW
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294
Query: 350 SMDGKYILTGGEDDLVQVWSM 370
S DG+ + G D++++VW +
Sbjct: 295 SADGQTLFAGYTDNVIRVWQV 315
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411
D I++ G D +V+ W++ ++ A GHNS ++ + + DGT
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-------ASPDGT------LI 211
Query: 412 GSVGQDTRLLLWDLEMDEIVVPL 434
S G+D ++LW+L + + L
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTL 234
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 12/135 (8%)
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355
HI Q + DG Y + D LR++D + + + ++
Sbjct: 66 HIVQ----DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415
I++G D ++VW+++ + +A GHN WVS V PN ++V S G
Sbjct: 122 IISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRV-----VPNEKADDDSVT--IISAG 173
Query: 416 QDTRLLLWDLEMDEI 430
D + W+L +I
Sbjct: 174 NDKMVKAWNLNQFQI 188
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA--------LLCCAW 349
Q + S+AFS + +LA G ++VF + L+ + + + AW
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294
Query: 350 SMDGKYILTGGEDDLVQVW 368
S DG+ + G D++++VW
Sbjct: 295 SADGQTLFAGYTDNVIRVW 313
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411
D I++ G D +V+ W++ ++ A GHNS ++ + + DGT
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-------ASPDGTL------I 211
Query: 412 GSVGQDTRLLLWDLEMDEIVVPL 434
S G+D ++LW+L + + L
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTL 234
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 12/135 (8%)
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355
HI Q + DG Y + D LR++D + + + ++
Sbjct: 60 HIVQ----DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 115
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415
I++G D ++VW+++ + +A GHN WVS V PN ++V S G
Sbjct: 116 IISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRV-----VPNEKADDDSVT--IISAG 167
Query: 416 QDTRLLLWDLEMDEI 430
D + W+L +I
Sbjct: 168 NDKMVKAWNLNQFQI 182
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA--------LLCCAW 349
Q + S+AFS + +LA G ++VF + L+ + + + AW
Sbjct: 230 AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 288
Query: 350 SMDGKYILTGGEDDLVQVWSM 370
S DG+ + G D++++VW +
Sbjct: 289 SADGQTLFAGYTDNVIRVWQV 309
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411
D I++ G D +V+ W++ ++ A GHNS ++ + + DGT
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-------ASPDGTL------I 205
Query: 412 GSVGQDTRLLLWDLEMDEIVVPL 434
S G+D ++LW+L + + L
Sbjct: 206 ASAGKDGEIMLWNLAAKKAMYTL 228
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 12/135 (8%)
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355
HI Q + DG Y + D LR++D + + + ++
Sbjct: 66 HIVQ----DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415
I++G D ++VW+++ + +A GHN WVS V PN ++V S G
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRV-----VPNEKADDDSVT--IISAG 173
Query: 416 QDTRLLLWDLEMDEI 430
D + W+L +I
Sbjct: 174 NDKMVKAWNLNQFQI 188
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA--------LLCCAW 349
Q + S+AFS + +LA G ++VF + L+ + + + AW
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294
Query: 350 SMDGKYILTGGEDDLVQVWSM 370
S DG+ + G D++++VW +
Sbjct: 295 SADGQTLFAGYTDNVIRVWQV 315
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411
D I++ G D +V+ W++ ++ A GHNS ++ + + DGT
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-------ASPDGTL------I 211
Query: 412 GSVGQDTRLLLWDLEMDEIVVPL 434
S G+D ++LW+L + + L
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTL 234
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 12/135 (8%)
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355
HI Q + DG Y + D LR++D + + + ++
Sbjct: 66 HIVQ----DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415
I++G D ++VW+++ + +A GHN WVS V PN ++V S G
Sbjct: 122 IISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRV-----VPNEKADDDSVT--IISAG 173
Query: 416 QDTRLLLWDLEMDEI 430
D + W+L +I
Sbjct: 174 NDKMVKAWNLNQFQI 188
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA--------LLCCAW 349
Q + S+AFS + +LA G ++VF + L+ + + + AW
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAW 294
Query: 350 SMDGKYILTGGEDDLVQVWSM 370
S DG+ + G D++++VW +
Sbjct: 295 SADGQTLFAGYTDNVIRVWQV 315
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411
D I++ G D +V+ W++ ++ A GHNS ++ + + DGT
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-------ASPDGT------LI 211
Query: 412 GSVGQDTRLLLWDLEMDEIVVPL 434
S G+D ++LW+L + + L
Sbjct: 212 ASAGKDGEIMLWNLAAKKAMYTL 234
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 22/140 (15%)
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK---EQLICGGKSYYGALLCCAWSMD 352
HI Q + DG Y + D LR++D + Q G KS ++ +D
Sbjct: 66 HIVQ----DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSV-----DID 116
Query: 353 GK--YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410
K I++G D ++VW+++ + +A GHN WVS V PN ++V
Sbjct: 117 KKASXIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRV-----VPNEKADDDSVT-- 168
Query: 411 FGSVGQDTRLLLWDLEMDEI 430
S G D + W+L +I
Sbjct: 169 IISAGNDKXVKAWNLNQFQI 188
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA--------LLCCAW 349
Q + S+AFS + +LA G ++VF + L+ + + + AW
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294
Query: 350 SMDGKYILTGGEDDLVQVWSM 370
S DG+ + G D++++VW +
Sbjct: 295 SADGQTLFAGYTDNVIRVWQV 315
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 16/146 (10%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCC--AWSMDGKYILTG 359
+++ +F+ + T DG ++D QL+ + +LC A S G ++G
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216
Query: 360 GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR 419
G D VW M + V E H S V+ V + P+ D F S D
Sbjct: 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRY-----YPSGDA--------FASGSDDAT 263
Query: 420 LLLWDLEMD-EIVVPLRRGPLGGSPT 444
L+DL D E+ + + + G+ +
Sbjct: 264 CRLYDLRADREVAIYSKESIIFGASS 289
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 29/134 (21%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFD---------YSKEQLICGGKSYYGALLCCAW 349
+ +NS+ + G A+ D R++D YSKE +I G S +
Sbjct: 240 ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV-------DF 292
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409
S+ G+ + G D + VW + V+ GH + VS + + + DGTA
Sbjct: 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL-------RVSPDGTA----- 340
Query: 410 RFGSVGQDTRLLLW 423
F S D L +W
Sbjct: 341 -FCSGSWDHTLRVW 353
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 317 VGRDGY-LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV 375
VG D + +RVF+Y+ + + +++ + A Y+L+G +D V++W+ E+
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 376 VAWG-EGHNSWVSGVAFD 392
+ EGH +V VAF+
Sbjct: 132 LEQTFEGHEHFVMCVAFN 149
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
D Y++T +D +++W + + VA EGH S VS F
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 317 VGRDGY-LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV 375
VG D + +RVF+Y+ + + +++ + A Y+L+G +D V++W+ E+
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 376 VAWG-EGHNSWVSGVAFD 392
+ EGH +V VAF+
Sbjct: 132 LEQTFEGHEHFVMCVAFN 149
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
D Y++T +D +++W + + VA EGH S VS F
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 317 VGRDGY-LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV 375
VG D + +RVF+Y+ + + +++ + A Y+L+G +D V++W+ E+
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 376 VAWG-EGHNSWVSGVAFD 392
+ EGH +V VAF+
Sbjct: 132 LEQTFEGHEHFVMCVAFN 149
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
D Y++T +D +++W + + VA EGH S VS F
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 317 VGRDGY-LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV 375
VG D + +RVF+Y+ + + +++ + A Y+L+G +D V++W+ E+
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 376 VAWG-EGHNSWVSGVAFD 392
+ EGH +V VAF+
Sbjct: 132 LEQTFEGHEHFVMCVAFN 149
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
D Y++T +D +++W + + VA EGH S VS F
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ ++N + F D Y+ + D ++V++ S + + + + C + + +++
Sbjct: 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVS 311
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393
G D+ +++W +E + EGH V + FD+
Sbjct: 312 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 346
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE---QLICGGKSYYGALLCCAWSMDGKY 355
+ + S+A++ G LAT RD + V++ +E + + S+ + W +
Sbjct: 105 ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWG--EGHNSWVSGVAFD 392
+ + DD V+++ E+ V EGH S V +AFD
Sbjct: 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD 203
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 294 RWHICQGS-INSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLIC----GGKSYYGALLCC 347
R H QGS + + FS D G ++ TVG D + FD + + + G +
Sbjct: 200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 259
Query: 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVV 376
+W +D + T G D ++VW + K V
Sbjct: 260 SW-LDSQKFATVGADATIRVWDVTTSKCV 287
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 294 RWHICQGS-INSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLIC----GGKSYYGALLCC 347
R H QGS + + FS D G ++ TVG D + FD + + + G +
Sbjct: 200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 259
Query: 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVV 376
+W +D + T G D ++VW + K V
Sbjct: 260 SW-LDSQKFATVGADATIRVWDVTTSKCV 287
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 350 SMDGKYILTGGEDDLVQVWS----MEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAE 405
+ + + +TGG D+LV++W + + + EGH+ WV VA WS
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA----WSP-------- 214
Query: 406 TVMYR--FGSVGQDTRLLLW 423
TV+ R SV QD ++W
Sbjct: 215 TVLLRSYLASVSQDRTCIIW 234
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 304 SIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363
++A S D + DG + V+D + L+ + + C S DG + TGG D+
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205
Query: 364 LVQVWSMEDRK 374
V+ W + + +
Sbjct: 206 TVRSWDLREGR 216
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355
H+ + + S+ F+ G + + G+D L + I K ++L C S+D KY
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISVDDKY 320
Query: 356 ILTGGEDDLVQVWSM 370
I+TG D V+ +
Sbjct: 321 IVTGSGDKKATVYEV 335
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 314 LATVGRDGYLRVFDYSKEQLICGGKSYYGALLC-CAWSMDGKYILTGGEDDLVQVWSMED 372
L++ R G + D G + + +C AW DG + +GG D++VQ+W
Sbjct: 189 LSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248
Query: 373 RKVVAWGEGHNSWVSGVAF 391
HN+ V VA+
Sbjct: 249 SIPKFTKTNHNAAVKAVAW 267
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 23/101 (22%)
Query: 333 LICGGKSYYGALLCCAWS-MDGKYILTGGEDDLVQVWSMED-------RKVVAWGEGHNS 384
L+CG + +L AW + I +G ED V VW + D R+ V EGH
Sbjct: 76 LVCG---HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 385 WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425
V VA+ TA+ V+ S G D +L+WD+
Sbjct: 133 RVGIVAWHP---------TAQNVLL---SAGCDNVILVWDV 161
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 306 AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLC-CAWSMDGKYILTGGEDDL 364
+ S + L++ R G++ D + S + +C W+ DG+++ +GG D+L
Sbjct: 194 SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 253
Query: 365 VQVW 368
V VW
Sbjct: 254 VNVW 257
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSY 394
AW +G Y+ G VQ+W ++ +K + H++ V ++++SY
Sbjct: 154 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY 200
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 306 AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLC-CAWSMDGKYILTGGEDDL 364
+ S + L++ R G++ D + S + +C W+ DG+++ +GG D+L
Sbjct: 205 SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 264
Query: 365 VQVW 368
V VW
Sbjct: 265 VNVW 268
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSY 394
AW +G Y+ G VQ+W ++ +K + H++ V ++++SY
Sbjct: 165 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY 211
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Query: 304 SIAFSTDGTYLATVGRDGYLRVFD-YSKEQLICGGKSYYGALLCCAWSMDGK--YILTGG 360
S+AFS+D + + RD +++++ + +S+ + C +S + I++ G
Sbjct: 110 SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 169
Query: 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRL 420
D LV+VW++ + K+ GH +++ V + DG+ S G+D +
Sbjct: 170 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTV-------SPDGSL------CASGGKDGQA 216
Query: 421 LLWDLEMDEIVVPLRRGPLGGSPTFS 446
+LWDL + + L G + + FS
Sbjct: 217 MLWDLNEGKHLYTLDGGDIINALCFS 242
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 302 INSIAFSTDGTYLATV--------GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG 353
IN++ FS + +L +G + V + +E + K+ AWS DG
Sbjct: 236 INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 295
Query: 354 KYILTGGEDDLVQVWSM 370
+ + G D+LV+VW +
Sbjct: 296 QTLFAGYTDNLVRVWQV 312
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY----GALLCCAWSMDGKY 355
G +N++ S DG+ A+ G+DG ++D ++ GK Y G ++ +Y
Sbjct: 193 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNE------GKHLYTLDGGDIINALCFSPNRY 246
Query: 356 ILTGGEDDLVQVWSMEDRKVV 376
L +++W +E + +V
Sbjct: 247 WLCAATGPSIKIWDLEGKIIV 267
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Query: 304 SIAFSTDGTYLATVGRDGYLRVFD-YSKEQLICGGKSYYGALLCCAWSMDGK--YILTGG 360
S+AFS+D + + RD +++++ + +S+ + C +S + I++ G
Sbjct: 133 SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192
Query: 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRL 420
D LV+VW++ + K+ GH +++ V + DG+ S G+D +
Sbjct: 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTV-------SPDGSL------CASGGKDGQA 239
Query: 421 LLWDLEMDEIVVPLRRGPLGGSPTFS 446
+LWDL + + L G + + FS
Sbjct: 240 MLWDLNEGKHLYTLDGGDIINALCFS 265
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 302 INSIAFSTDGTYL-ATVG-------RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG 353
IN++ FS + +L A G +G + V + +E + K+ AWS DG
Sbjct: 259 INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318
Query: 354 KYILTGGEDDLVQVWSM 370
+ + G D+LV+VW +
Sbjct: 319 QTLFAGYTDNLVRVWQV 335
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY----GALLCCAWSMDGKY 355
G +N++ S DG+ A+ G+DG ++D ++ GK Y G ++ +Y
Sbjct: 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNE------GKHLYTLDGGDIINALCFSPNRY 269
Query: 356 ILTGGEDDLVQVWSMEDRKVV 376
L +++W +E + +V
Sbjct: 270 WLCAATGPSIKIWDLEGKIIV 290
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 350 SMDGKYILTGGEDDLVQVWS----MEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAE 405
+ + + +TGG D+LV++W + + + EGH+ WV VA+ +
Sbjct: 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW------------SP 216
Query: 406 TVMYR--FGSVGQDTRLLLW 423
TV+ R SV QD ++W
Sbjct: 217 TVLLRSYLASVSQDRTCIIW 236
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG----GKSYYGALLCCAWSMDGKYIL 357
+ S+AFS G L +G V+D +++ S+ G + C S DG +
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC 360
Query: 358 TGGEDDLVQVWSME-DRKVV 376
TG D +++W+ RK+V
Sbjct: 361 TGSWDKNLKIWAFSGHRKIV 380
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327
S + +H +G INS+ F DG T DG R+FD
Sbjct: 239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYS 329
G +N + F++DG +L TVG D +R+++ S
Sbjct: 246 GKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 350 SMDGKYILTGGEDDLVQVWS----MEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAE 405
+ + + +TGG D+LV++W + + + EGH+ WV VA+ +
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW------------SP 214
Query: 406 TVMYR--FGSVGQDTRLLLW 423
TV+ R SV QD ++W
Sbjct: 215 TVLLRSYLASVSQDRTCIIW 234
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG 342
+P++ R H+ I + F + Y+ T D +RV+D ++ + + G
Sbjct: 107 NPKFVPQRTTLRGHMT-SVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDG 163
Query: 343 ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSY 394
+ ++ G +++G D V+VW ++ EGHNS V + Y
Sbjct: 164 GVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 306 AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLC-CAWSMDGKYILTGGEDDL 364
+ S + L++ R G++ D + S + +C W+ DG+++ +GG D+L
Sbjct: 114 SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 173
Query: 365 VQVW 368
V VW
Sbjct: 174 VNVW 177
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSY 394
AW +G Y+ G VQ+W ++ +K + H++ V ++++SY
Sbjct: 74 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY 120
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 18/78 (23%)
Query: 352 DGKYILTGGEDDLVQVWS----MEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407
+ + +TGG D+LV++W + + + EGH+ WV VA+ + TV
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW------------SPTV 216
Query: 408 MYR--FGSVGQDTRLLLW 423
+ R SV QD ++W
Sbjct: 217 LLRSYMASVSQDRTCIIW 234
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 15/80 (18%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLC--------CAW-SMD 352
+ ++A+ +G +A+VG DG L V+ E++ K + LC W ++
Sbjct: 253 VYNVAWGFNG-LIASVGADGVLAVY----EEVDGEWKVFAKRALCHGVYEINVVKWLELN 307
Query: 353 GKYIL-TGGEDDLVQVWSME 371
GK IL TGG+D +V WS+E
Sbjct: 308 GKTILATGGDDGIVNFWSLE 327
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVF--DYSKEQLICGG--KSYYGALLCCAWSMDGK 354
+ + +A+S DG YLAT RD + ++ D S E+ C + + + W
Sbjct: 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA 166
Query: 355 YILTGGEDDLVQVWS--MEDRKVVAWGEGHNSWVSGVAFD 392
+ + DD V++W +D + VA GH V FD
Sbjct: 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFD 206
>pdb|2OAJ|A Chain A, Crystal Structure Of Sro7 From S. Cerevisiae
Length = 902
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 223 NKDGSVNNSRCTSVTWVPGGDG-AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281
NKD + T +P G AF+ GH++G++ +Y+ S GD I+D F V
Sbjct: 426 NKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH---GD-----IQDNASFEV 477
Query: 282 AHPR-YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL 333
R +K+ +A ++ I+F+ + LA G + +F Y Q
Sbjct: 478 NLSRTLNKAKELA--------VDKISFAAETLELAVSIETGDVVLFKYEVNQF 522
>pdb|1U3E|M Chain M, Dna Binding And Cleavage By The Hnh Homing Endonuclease
I-Hmui
Length = 174
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 196 NSGDVYSV----SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251
N+G+VYS+ +L+ Q+ G +G K + R ++ + G + VV H
Sbjct: 17 NTGEVYSIKSGKTLKHQIPKDGYHRIGLFKGGKGKTFQVHRLVAIHFCEGYEEGLVVDHK 76
Query: 252 DGN 254
DGN
Sbjct: 77 DGN 79
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 350 SMDGKYILTGGEDDLVQVWS----MEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAE 405
+ + + +TGG D+LV++W + + + EGH+ WV VA+ +
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW------------SP 214
Query: 406 TVMYR--FGSVGQDTRLLLW 423
TV+ R SV QD ++W
Sbjct: 215 TVLLRSYXASVSQDRTCIIW 234
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330
G +N++A S GT A+ G DG++R+ + K
Sbjct: 316 GPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 369
+ Y+ T D +RV+D ++ + + G + ++ G +++G D V+VW
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189
Query: 370 MEDRKVVAWGEGHNSWVSGVAFDSY 394
++ EGHNS V + Y
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEY 214
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 206 RQQLQDVGKKLVGAH-HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 264
R+ LQ + + H YN D S+ + T + G DG AD + YE
Sbjct: 422 RKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYES---- 477
Query: 265 AGDSSFPVIKDQTQFS 280
G + PV+ +TQ+S
Sbjct: 478 LGYGNLPVVMAKTQYS 493
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 206 RQQLQDVGKKLVGAH-HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 264
R+ LQ + + H YN D S+ + T + G DG AD + YE
Sbjct: 422 RKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYES---- 477
Query: 265 AGDSSFPVIKDQTQFS 280
G + PV+ +TQ+S
Sbjct: 478 LGYGNLPVVMAKTQYS 493
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 346 CCAWSMDGKYILTGGEDDLVQVWS 369
C AWS DG I+TG E+ +++W+
Sbjct: 113 CLAWSHDGNSIVTGVENGELRLWN 136
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 47/144 (32%), Gaps = 20/144 (13%)
Query: 236 VTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARW 295
+ W P D G D + V+E G ++ + + ++K I W
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGG-------LVLPLREPVITLEGHTKRVGIVAW 139
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS--KEQLICGGKSYYGALLCCAWSMDG 353
H T L + G D + V+D L G + + WS DG
Sbjct: 140 H-----------PTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG 188
Query: 354 KYILTGGEDDLVQVWSMEDRKVVA 377
I T D V+V VVA
Sbjct: 189 ALICTSCRDKRVRVIEPRKGTVVA 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,031,839
Number of Sequences: 62578
Number of extensions: 714744
Number of successful extensions: 2140
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1712
Number of HSP's gapped (non-prelim): 355
length of query: 548
length of database: 14,973,337
effective HSP length: 104
effective length of query: 444
effective length of database: 8,465,225
effective search space: 3758559900
effective search space used: 3758559900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)