Query 008939
Match_columns 548
No_of_seqs 539 out of 2770
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 18:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2394 WD40 protein DMR-N9 [G 100.0 4.4E-57 9.6E-62 431.8 36.1 495 1-516 3-634 (636)
2 KOG0271 Notchless-like WD40 re 100.0 4.1E-48 8.9E-53 356.0 26.1 332 117-511 100-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 2.3E-44 5.1E-49 331.3 25.2 331 164-542 106-472 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 9.2E-42 2E-46 318.3 23.7 282 129-511 174-458 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 8.9E-40 1.9E-44 305.0 22.2 269 173-542 175-451 (459)
6 KOG0291 WD40-repeat-containing 100.0 3.9E-37 8.4E-42 305.7 38.8 370 125-544 140-543 (893)
7 KOG0286 G-protein beta subunit 100.0 5.9E-37 1.3E-41 273.6 31.7 289 124-511 49-343 (343)
8 KOG0279 G protein beta subunit 100.0 2.3E-35 4.9E-40 262.0 29.2 292 165-513 7-313 (315)
9 KOG0284 Polyadenylation factor 100.0 1E-36 2.2E-41 283.4 18.6 285 130-516 96-383 (464)
10 KOG0273 Beta-transducin family 100.0 6.1E-35 1.3E-39 276.1 30.4 319 128-544 176-516 (524)
11 KOG0296 Angio-associated migra 100.0 3.2E-34 6.9E-39 263.5 30.5 330 123-513 57-398 (399)
12 KOG0295 WD40 repeat-containing 100.0 7.9E-35 1.7E-39 267.2 25.5 287 123-512 101-405 (406)
13 KOG0318 WD40 repeat stress pro 100.0 2.4E-33 5.2E-38 268.6 35.9 367 123-545 52-554 (603)
14 KOG0319 WD40-repeat-containing 100.0 6.7E-34 1.4E-38 282.6 32.4 382 128-544 103-570 (775)
15 KOG0315 G-protein beta subunit 100.0 1E-33 2.2E-38 247.4 29.0 252 130-436 40-298 (311)
16 KOG0263 Transcription initiati 100.0 1.5E-34 3.2E-39 290.3 27.2 254 122-430 370-653 (707)
17 KOG0286 G-protein beta subunit 100.0 1.7E-33 3.7E-38 251.5 30.8 283 165-542 47-336 (343)
18 KOG0273 Beta-transducin family 100.0 9E-34 1.9E-38 268.2 30.4 278 129-513 234-523 (524)
19 KOG0263 Transcription initiati 100.0 9.4E-35 2E-39 291.7 22.2 255 172-516 377-652 (707)
20 KOG0279 G protein beta subunit 100.0 3.5E-33 7.7E-38 248.1 28.0 285 125-472 10-312 (315)
21 KOG0285 Pleiotropic regulator 100.0 1.9E-33 4.2E-38 257.3 26.7 291 126-514 147-440 (460)
22 KOG0315 G-protein beta subunit 100.0 1.2E-32 2.6E-37 240.7 29.4 272 143-517 11-292 (311)
23 KOG0291 WD40-repeat-containing 100.0 1.8E-32 3.9E-37 272.6 33.9 324 130-516 265-615 (893)
24 cd00200 WD40 WD40 domain, foun 100.0 4.9E-32 1.1E-36 262.5 36.6 282 126-511 5-289 (289)
25 KOG0281 Beta-TrCP (transducin 100.0 7.2E-35 1.6E-39 265.5 14.2 283 130-516 197-480 (499)
26 KOG0284 Polyadenylation factor 100.0 2.4E-34 5.3E-39 267.5 17.2 266 174-542 97-371 (464)
27 KOG0645 WD40 repeat protein [G 100.0 1.2E-31 2.5E-36 237.4 28.9 292 125-513 9-311 (312)
28 KOG0318 WD40 repeat stress pro 100.0 1E-30 2.2E-35 250.6 36.4 337 132-529 20-369 (603)
29 KOG0266 WD40 repeat-containing 100.0 1.8E-31 3.9E-36 274.9 31.9 285 128-513 157-454 (456)
30 KOG0319 WD40-repeat-containing 100.0 7.4E-32 1.6E-36 268.1 26.9 294 128-512 321-618 (775)
31 KOG0306 WD40-repeat-containing 100.0 2.6E-31 5.7E-36 264.2 29.3 305 116-514 359-665 (888)
32 PLN00181 protein SPA1-RELATED; 100.0 3.9E-30 8.4E-35 284.4 40.2 296 126-512 479-792 (793)
33 KOG0285 Pleiotropic regulator 100.0 1.6E-31 3.5E-36 244.7 23.3 283 163-548 141-438 (460)
34 KOG0276 Vesicle coat complex C 100.0 4.4E-31 9.5E-36 257.6 27.7 251 128-434 11-265 (794)
35 KOG0293 WD40 repeat-containing 100.0 4E-31 8.6E-36 246.3 25.0 290 123-514 217-514 (519)
36 KOG0645 WD40 repeat protein [G 100.0 8.9E-30 1.9E-34 225.6 31.9 280 165-543 6-303 (312)
37 KOG0295 WD40 repeat-containing 100.0 3.7E-31 7.9E-36 243.2 22.3 290 165-542 100-397 (406)
38 KOG0265 U5 snRNP-specific prot 100.0 3.3E-30 7.2E-35 231.4 27.8 285 124-511 41-336 (338)
39 KOG0296 Angio-associated migra 100.0 6.9E-30 1.5E-34 235.0 30.4 321 164-543 55-390 (399)
40 KOG0282 mRNA splicing factor [ 100.0 1.2E-31 2.6E-36 254.8 18.0 286 123-511 207-503 (503)
41 KOG0313 Microtubule binding pr 100.0 4.9E-30 1.1E-34 237.0 27.6 308 129-512 104-417 (423)
42 cd00200 WD40 WD40 domain, foun 100.0 3.1E-29 6.7E-34 242.8 34.6 277 167-545 3-285 (289)
43 KOG0306 WD40-repeat-containing 100.0 2E-29 4.4E-34 250.9 32.8 380 122-543 99-614 (888)
44 KOG0276 Vesicle coat complex C 100.0 1.8E-30 3.8E-35 253.4 24.4 275 229-546 12-294 (794)
45 KOG0292 Vesicle coat complex C 100.0 2.2E-30 4.8E-35 261.4 24.2 273 172-544 8-315 (1202)
46 KOG0266 WD40 repeat-containing 100.0 2.2E-29 4.8E-34 259.4 32.3 270 173-541 159-442 (456)
47 KOG0277 Peroxisomal targeting 100.0 5.7E-30 1.2E-34 224.7 22.4 277 175-546 10-304 (311)
48 KOG0281 Beta-TrCP (transducin 100.0 5E-31 1.1E-35 240.5 14.3 256 229-540 196-466 (499)
49 KOG0277 Peroxisomal targeting 100.0 1.9E-29 4.2E-34 221.3 21.7 265 150-512 37-308 (311)
50 PLN00181 protein SPA1-RELATED; 100.0 3E-28 6.4E-33 269.4 36.7 284 170-545 480-787 (793)
51 KOG0316 Conserved WD40 repeat- 100.0 1.2E-28 2.6E-33 214.0 25.7 254 126-436 13-267 (307)
52 KOG0292 Vesicle coat complex C 100.0 1.1E-28 2.3E-33 249.4 27.9 249 131-436 10-290 (1202)
53 KOG1539 WD repeat protein [Gen 100.0 6E-28 1.3E-32 243.2 33.1 362 144-542 175-638 (910)
54 KOG0265 U5 snRNP-specific prot 100.0 1.6E-28 3.4E-33 220.6 25.3 282 164-543 38-330 (338)
55 KOG0640 mRNA cleavage stimulat 100.0 8.5E-29 1.8E-33 222.9 23.5 308 165-513 104-426 (430)
56 KOG0305 Anaphase promoting com 100.0 1.5E-28 3.3E-33 243.3 24.4 275 178-515 182-463 (484)
57 KOG0264 Nucleosome remodeling 100.0 1.2E-28 2.5E-33 233.4 22.3 278 169-514 120-405 (422)
58 KOG1407 WD40 repeat protein [F 100.0 2.7E-27 5.9E-32 208.7 27.7 285 125-513 15-311 (313)
59 KOG0274 Cdc4 and related F-box 100.0 1.5E-27 3.2E-32 245.2 30.4 280 128-519 206-488 (537)
60 KOG0316 Conserved WD40 repeat- 100.0 4.7E-28 1E-32 210.3 22.4 269 229-546 16-295 (307)
61 KOG0643 Translation initiation 100.0 9.6E-28 2.1E-32 212.2 24.7 306 124-514 4-318 (327)
62 KOG0973 Histone transcription 100.0 8E-28 1.7E-32 249.9 27.7 312 129-516 12-358 (942)
63 KOG0772 Uncharacterized conser 100.0 5.7E-28 1.2E-32 231.1 23.4 306 123-511 160-485 (641)
64 KOG0278 Serine/threonine kinas 100.0 2.4E-28 5.1E-33 213.9 16.8 288 168-516 9-300 (334)
65 KOG1446 Histone H3 (Lys4) meth 100.0 1.4E-25 3.1E-30 203.7 34.1 280 129-513 13-303 (311)
66 PTZ00421 coronin; Provisional 100.0 4.5E-26 9.7E-31 234.1 34.0 220 168-435 70-299 (493)
67 KOG0275 Conserved WD40 repeat- 100.0 2E-28 4.2E-33 221.7 14.5 291 166-511 205-507 (508)
68 KOG1408 WD40 repeat protein [F 100.0 1.2E-26 2.5E-31 229.7 27.4 336 134-515 328-715 (1080)
69 KOG0641 WD40 repeat protein [G 100.0 2.5E-25 5.5E-30 192.1 31.5 298 123-514 25-350 (350)
70 KOG0310 Conserved WD40 repeat- 100.0 7.1E-27 1.5E-31 222.9 23.8 271 172-545 25-303 (487)
71 KOG0310 Conserved WD40 repeat- 100.0 1.2E-26 2.7E-31 221.3 25.4 280 129-514 25-310 (487)
72 KOG0639 Transducin-like enhanc 100.0 8.1E-27 1.8E-31 222.4 22.4 314 94-512 385-703 (705)
73 KOG0313 Microtubule binding pr 100.0 2.7E-26 5.9E-31 212.3 24.5 264 229-542 104-409 (423)
74 PTZ00421 coronin; Provisional 100.0 1.5E-25 3.2E-30 230.2 32.6 210 228-516 73-293 (493)
75 KOG0282 mRNA splicing factor [ 100.0 2.4E-27 5.1E-32 225.8 17.7 274 227-545 211-499 (503)
76 KOG0269 WD40 repeat-containing 100.0 5.6E-27 1.2E-31 234.5 20.9 288 133-516 42-343 (839)
77 KOG0283 WD40 repeat-containing 99.9 2.3E-26 5E-31 233.5 24.1 265 228-514 265-577 (712)
78 KOG0283 WD40 repeat-containing 99.9 2.5E-26 5.5E-31 233.1 24.1 247 125-428 261-578 (712)
79 KOG0300 WD40 repeat-containing 99.9 2.9E-26 6.3E-31 207.2 21.4 316 164-515 139-478 (481)
80 KOG1408 WD40 repeat protein [F 99.9 1.3E-25 2.8E-30 222.3 27.6 374 141-546 269-708 (1080)
81 PTZ00420 coronin; Provisional 99.9 4.6E-25 9.9E-30 227.6 32.9 234 194-516 50-296 (568)
82 KOG0289 mRNA splicing factor [ 99.9 1.5E-25 3.2E-30 210.6 25.6 277 175-512 221-505 (506)
83 PTZ00420 coronin; Provisional 99.9 3E-24 6.5E-29 221.6 36.4 228 152-429 55-296 (568)
84 KOG0305 Anaphase promoting com 99.9 1.4E-25 2.9E-30 222.4 25.1 240 130-428 217-463 (484)
85 KOG0293 WD40 repeat-containing 99.9 4.4E-26 9.5E-31 212.8 20.1 272 229-544 223-506 (519)
86 KOG0264 Nucleosome remodeling 99.9 7.5E-26 1.6E-30 214.5 21.9 259 125-426 119-404 (422)
87 KOG0299 U3 snoRNP-associated p 99.9 1.9E-25 4.1E-30 211.6 24.0 294 166-539 135-443 (479)
88 KOG0288 WD40 repeat protein Ti 99.9 2.6E-26 5.7E-31 214.5 17.9 281 126-511 171-459 (459)
89 KOG0640 mRNA cleavage stimulat 99.9 8.6E-26 1.9E-30 203.6 20.3 254 123-426 105-426 (430)
90 KOG0274 Cdc4 and related F-box 99.9 3E-25 6.6E-30 228.2 27.2 265 172-544 207-475 (537)
91 KOG0294 WD40 repeat-containing 99.9 7.5E-25 1.6E-29 198.3 25.8 275 190-515 3-283 (362)
92 KOG0275 Conserved WD40 repeat- 99.9 1.1E-26 2.4E-31 210.4 13.9 241 229-546 212-462 (508)
93 KOG0268 Sof1-like rRNA process 99.9 4.4E-26 9.6E-31 209.6 16.7 278 126-513 62-345 (433)
94 KOG0647 mRNA export protein (c 99.9 6.7E-25 1.4E-29 197.5 23.5 264 229-539 26-311 (347)
95 KOG0973 Histone transcription 99.9 5E-25 1.1E-29 229.2 26.1 288 229-546 12-350 (942)
96 KOG0301 Phospholipase A2-activ 99.9 7.2E-25 1.6E-29 217.1 25.3 276 126-513 10-288 (745)
97 KOG2106 Uncharacterized conser 99.9 1.6E-23 3.4E-28 200.4 32.4 354 125-542 99-512 (626)
98 KOG1407 WD40 repeat protein [F 99.9 2.4E-24 5.1E-29 190.2 23.8 273 168-541 15-292 (313)
99 KOG0641 WD40 repeat protein [G 99.9 4.9E-23 1.1E-27 178.1 30.2 286 164-539 24-337 (350)
100 KOG2096 WD40 repeat protein [G 99.9 5.4E-24 1.2E-28 192.8 25.3 302 166-542 79-394 (420)
101 KOG0278 Serine/threonine kinas 99.9 1.5E-25 3.1E-30 196.5 14.7 246 125-430 54-301 (334)
102 KOG0308 Conserved WD40 repeat- 99.9 1.7E-24 3.6E-29 213.0 23.4 262 140-445 35-305 (735)
103 KOG4283 Transcription-coupled 99.9 3.8E-24 8.2E-29 191.8 23.6 298 170-512 40-364 (397)
104 KOG0308 Conserved WD40 repeat- 99.9 4.2E-25 9E-30 217.2 17.8 240 185-515 34-287 (735)
105 KOG0294 WD40 repeat-containing 99.9 7.8E-24 1.7E-28 191.7 24.2 247 123-428 36-283 (362)
106 KOG0643 Translation initiation 99.9 4.9E-23 1.1E-27 182.5 27.4 273 169-545 6-311 (327)
107 KOG2096 WD40 repeat protein [G 99.9 2.4E-23 5.3E-28 188.6 25.7 300 119-511 75-400 (420)
108 KOG0268 Sof1-like rRNA process 99.9 5.1E-25 1.1E-29 202.7 14.7 269 227-545 63-339 (433)
109 KOG0301 Phospholipase A2-activ 99.9 5.3E-24 1.1E-28 211.0 22.6 272 165-545 6-282 (745)
110 KOG0288 WD40 repeat protein Ti 99.9 5.4E-25 1.2E-29 205.7 14.4 268 228-542 173-452 (459)
111 KOG1332 Vesicle coat complex C 99.9 4.2E-24 9.1E-29 186.9 18.1 239 188-513 23-286 (299)
112 KOG1036 Mitotic spindle checkp 99.9 4.4E-23 9.5E-28 186.6 25.2 274 173-541 13-294 (323)
113 KOG0646 WD40 repeat protein [G 99.9 1.1E-23 2.4E-28 200.1 21.9 256 143-447 51-329 (476)
114 KOG0299 U3 snoRNP-associated p 99.9 5.8E-23 1.2E-27 194.9 24.4 247 125-428 137-412 (479)
115 KOG0269 WD40 repeat-containing 99.9 7.7E-24 1.7E-28 212.2 18.7 235 230-546 87-335 (839)
116 KOG0646 WD40 repeat protein [G 99.9 7.2E-23 1.6E-27 194.6 23.6 278 148-516 13-310 (476)
117 KOG2106 Uncharacterized conser 99.9 3.1E-21 6.8E-26 184.8 34.7 381 128-546 198-621 (626)
118 KOG1446 Histone H3 (Lys4) meth 99.9 4.8E-22 1E-26 180.8 27.3 240 132-428 58-305 (311)
119 KOG0647 mRNA export protein (c 99.9 2.4E-22 5.2E-27 181.1 24.9 245 129-432 26-287 (347)
120 KOG0639 Transducin-like enhanc 99.9 1.7E-23 3.7E-28 199.9 17.9 269 229-542 418-695 (705)
121 KOG0289 mRNA splicing factor [ 99.9 2.4E-22 5.2E-27 189.2 25.1 241 132-428 221-464 (506)
122 KOG0650 WD40 repeat nucleolar 99.9 5.6E-23 1.2E-27 200.4 21.5 305 123-511 393-733 (733)
123 KOG2055 WD40 repeat protein [G 99.9 7.3E-22 1.6E-26 187.4 25.8 289 127-513 210-512 (514)
124 KOG0267 Microtubule severing p 99.9 3.7E-24 8E-29 212.9 9.6 227 229-542 27-259 (825)
125 KOG0300 WD40 repeat-containing 99.9 1.5E-22 3.3E-27 183.2 18.7 204 227-516 145-389 (481)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.8E-20 6.2E-25 182.6 36.8 287 143-495 2-300 (300)
127 KOG2445 Nuclear pore complex c 99.9 1.6E-21 3.5E-26 176.2 25.2 275 172-512 12-317 (361)
128 KOG0302 Ribosome Assembly prot 99.9 2.9E-22 6.3E-27 185.6 20.3 269 174-508 152-434 (440)
129 KOG4283 Transcription-coupled 99.9 5E-22 1.1E-26 178.3 20.8 232 228-516 41-279 (397)
130 KOG0321 WD40 repeat-containing 99.9 4E-22 8.6E-27 196.0 21.9 297 175-516 51-394 (720)
131 KOG1332 Vesicle coat complex C 99.9 3.1E-22 6.8E-27 175.2 18.9 254 127-427 8-287 (299)
132 KOG2445 Nuclear pore complex c 99.9 6.8E-21 1.5E-25 172.2 27.7 287 126-445 9-340 (361)
133 KOG0270 WD40 repeat-containing 99.9 9.6E-22 2.1E-26 185.9 22.7 296 136-516 131-452 (463)
134 KOG0772 Uncharacterized conser 99.9 1.6E-22 3.4E-27 194.1 17.5 244 169-450 163-422 (641)
135 KOG0302 Ribosome Assembly prot 99.9 1.1E-21 2.3E-26 181.9 22.3 252 121-419 142-432 (440)
136 KOG2048 WD40 repeat protein [G 99.9 1.8E-20 3.8E-25 185.9 31.4 288 166-514 18-320 (691)
137 KOG0267 Microtubule severing p 99.9 2.9E-23 6.3E-28 206.5 11.6 236 125-417 23-259 (825)
138 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.3E-20 1.4E-24 180.1 34.9 267 189-516 2-282 (300)
139 KOG1036 Mitotic spindle checkp 99.9 8.3E-21 1.8E-25 172.0 25.4 243 130-435 13-271 (323)
140 KOG4328 WD40 protein [Function 99.9 1.7E-21 3.6E-26 184.8 21.5 303 164-513 177-495 (498)
141 KOG1539 WD repeat protein [Gen 99.9 4.2E-20 9E-25 187.0 32.8 350 125-511 197-646 (910)
142 KOG1274 WD40 repeat protein [G 99.9 1E-20 2.3E-25 193.4 28.4 242 128-427 11-263 (933)
143 KOG1063 RNA polymerase II elon 99.9 3E-20 6.5E-25 184.5 29.4 403 122-542 46-639 (764)
144 KOG4378 Nuclear protein COP1 [ 99.9 4.7E-21 1E-25 183.1 22.3 293 144-496 5-304 (673)
145 KOG1274 WD40 repeat protein [G 99.9 3.7E-20 7.9E-25 189.5 28.5 265 171-536 11-285 (933)
146 KOG2055 WD40 repeat protein [G 99.9 1.6E-20 3.6E-25 178.2 24.1 279 173-544 213-505 (514)
147 KOG2048 WD40 repeat protein [G 99.9 3.7E-19 8.1E-24 176.6 31.4 245 130-430 25-279 (691)
148 KOG2919 Guanine nucleotide-bin 99.9 1.2E-19 2.5E-24 165.2 22.4 253 135-427 54-328 (406)
149 KOG0321 WD40 repeat-containing 99.9 1E-19 2.2E-24 179.1 23.4 277 124-430 94-395 (720)
150 KOG0307 Vesicle coat complex C 99.9 7.1E-21 1.5E-25 199.3 16.1 275 152-516 40-330 (1049)
151 KOG1007 WD repeat protein TSSC 99.9 2.4E-19 5.2E-24 160.8 22.9 306 152-514 41-362 (370)
152 KOG1273 WD40 repeat protein [G 99.9 3.3E-19 7.2E-24 161.7 24.0 282 133-513 26-322 (405)
153 KOG1063 RNA polymerase II elon 99.8 1.7E-19 3.7E-24 179.2 23.6 358 130-513 316-763 (764)
154 KOG0649 WD40 repeat protein [G 99.8 9.7E-19 2.1E-23 153.3 25.5 257 175-521 12-282 (325)
155 KOG1963 WD40 repeat protein [G 99.8 2.3E-18 5.1E-23 176.1 31.3 365 136-542 22-530 (792)
156 KOG1445 Tumor-specific antigen 99.8 3.9E-19 8.4E-24 174.6 22.4 205 125-370 74-292 (1012)
157 KOG1034 Transcriptional repres 99.8 2.4E-19 5.2E-24 163.6 18.8 293 172-513 37-383 (385)
158 KOG1188 WD40 repeat protein [G 99.8 5.8E-19 1.3E-23 162.0 20.5 289 189-526 41-359 (376)
159 KOG4378 Nuclear protein COP1 [ 99.8 1.4E-19 3.1E-24 173.1 16.7 217 134-393 83-303 (673)
160 KOG0270 WD40 repeat-containing 99.8 5.3E-19 1.2E-23 167.4 20.0 239 141-431 191-454 (463)
161 COG2319 FOG: WD40 repeat [Gene 99.8 4.5E-16 9.8E-21 159.2 42.3 354 125-540 60-431 (466)
162 KOG0307 Vesicle coat complex C 99.8 9.8E-20 2.1E-24 190.9 14.5 250 130-429 64-330 (1049)
163 KOG2919 Guanine nucleotide-bin 99.8 2.3E-18 5E-23 156.9 21.2 251 177-514 53-328 (406)
164 KOG0650 WD40 repeat nucleolar 99.8 6.3E-18 1.4E-22 165.4 24.1 303 166-544 393-728 (733)
165 KOG1538 Uncharacterized conser 99.8 8.8E-18 1.9E-22 166.0 24.2 250 132-426 14-293 (1081)
166 KOG4328 WD40 protein [Function 99.8 1E-17 2.2E-22 159.3 23.6 258 128-436 184-460 (498)
167 KOG1009 Chromatin assembly com 99.8 1.2E-17 2.6E-22 156.7 22.9 314 129-518 12-377 (434)
168 KOG4227 WD40 repeat protein [G 99.8 1.9E-17 4.2E-22 154.2 22.2 312 125-512 51-386 (609)
169 KOG1587 Cytoplasmic dynein int 99.8 6E-17 1.3E-21 165.8 27.0 283 152-515 223-518 (555)
170 KOG0290 Conserved WD40 repeat- 99.8 8E-17 1.7E-21 144.9 24.2 260 130-427 44-319 (364)
171 COG2319 FOG: WD40 repeat [Gene 99.8 1.9E-15 4.1E-20 154.6 37.8 322 132-514 111-443 (466)
172 KOG0303 Actin-binding protein 99.8 1.9E-17 4.1E-22 154.7 20.0 166 228-427 79-250 (472)
173 KOG1523 Actin-related protein 99.8 2.9E-17 6.4E-22 149.7 20.6 246 130-425 10-277 (361)
174 KOG0322 G-protein beta subunit 99.8 7.3E-18 1.6E-22 149.6 15.6 264 127-425 11-322 (323)
175 KOG1009 Chromatin assembly com 99.8 7.8E-17 1.7E-21 151.3 21.8 285 229-543 12-364 (434)
176 KOG1273 WD40 repeat protein [G 99.8 6.3E-17 1.4E-21 147.1 20.0 225 302-541 26-269 (405)
177 KOG0290 Conserved WD40 repeat- 99.8 1.1E-16 2.3E-21 144.1 21.1 255 175-515 46-320 (364)
178 KOG1007 WD repeat protein TSSC 99.8 9.4E-17 2E-21 144.3 19.6 261 119-426 52-361 (370)
179 KOG1034 Transcriptional repres 99.8 1.4E-16 3.1E-21 145.7 20.6 247 127-426 35-383 (385)
180 KOG0322 G-protein beta subunit 99.7 5E-17 1.1E-21 144.3 16.3 272 164-512 5-322 (323)
181 KOG1517 Guanine nucleotide bin 99.7 4.8E-16 1E-20 161.3 25.9 302 130-515 1064-1383(1387)
182 KOG2110 Uncharacterized conser 99.7 1E-14 2.2E-19 135.8 31.6 239 131-429 6-251 (391)
183 KOG1188 WD40 repeat protein [G 99.7 7.1E-17 1.5E-21 148.4 17.0 196 143-375 41-246 (376)
184 KOG1523 Actin-related protein 99.7 2E-16 4.3E-21 144.4 19.7 214 166-429 3-239 (361)
185 KOG0642 Cell-cycle nuclear pro 99.7 4.7E-17 1E-21 158.7 16.4 230 168-435 289-570 (577)
186 KOG0644 Uncharacterized conser 99.7 2.5E-18 5.4E-23 173.9 7.7 236 290-544 181-461 (1113)
187 KOG1963 WD40 repeat protein [G 99.7 2E-15 4.3E-20 154.9 28.7 308 128-515 203-540 (792)
188 PRK11028 6-phosphogluconolacto 99.7 9E-15 2E-19 145.8 32.8 227 150-428 11-260 (330)
189 KOG0649 WD40 repeat protein [G 99.7 1.5E-15 3.3E-20 133.4 22.4 242 133-426 13-274 (325)
190 KOG0642 Cell-cycle nuclear pro 99.7 3.7E-17 8.1E-22 159.5 13.6 251 228-516 292-564 (577)
191 PRK11028 6-phosphogluconolacto 99.7 1.2E-14 2.6E-19 144.9 30.2 250 131-426 35-304 (330)
192 KOG1240 Protein kinase contain 99.7 3.7E-15 7.9E-20 157.3 27.1 344 128-511 1046-1431(1431)
193 KOG1272 WD40-repeat-containing 99.7 4.6E-17 1E-21 155.1 11.8 263 170-495 126-389 (545)
194 KOG0303 Actin-binding protein 99.7 8.9E-16 1.9E-20 143.6 19.9 231 152-429 58-297 (472)
195 KOG4497 Uncharacterized conser 99.7 4.7E-15 1E-19 135.8 23.8 210 135-371 13-240 (447)
196 KOG1445 Tumor-specific antigen 99.7 6.1E-16 1.3E-20 152.4 16.5 194 194-427 599-799 (1012)
197 KOG1524 WD40 repeat-containing 99.7 9.9E-16 2.2E-20 148.3 17.5 202 245-545 77-280 (737)
198 KOG1524 WD40 repeat-containing 99.7 2.8E-15 6.1E-20 145.2 20.6 220 129-393 13-237 (737)
199 KOG1334 WD40 repeat protein [G 99.7 4.9E-16 1.1E-20 149.1 14.9 297 124-514 136-467 (559)
200 KOG1587 Cytoplasmic dynein int 99.7 7.3E-15 1.6E-19 150.5 24.3 264 130-428 242-518 (555)
201 KOG2394 WD40 protein DMR-N9 [G 99.7 6.4E-15 1.4E-19 143.0 21.5 151 172-351 218-384 (636)
202 KOG0644 Uncharacterized conser 99.7 4.1E-16 9E-21 158.1 13.6 248 126-435 186-435 (1113)
203 KOG1538 Uncharacterized conser 99.7 4.6E-15 9.9E-20 147.1 20.5 275 175-513 14-293 (1081)
204 KOG4227 WD40 repeat protein [G 99.7 1.5E-14 3.2E-19 135.2 20.2 280 223-542 49-378 (609)
205 PRK01742 tolB translocation pr 99.7 2E-14 4.3E-19 148.0 23.3 219 152-434 185-411 (429)
206 PRK01742 tolB translocation pr 99.6 1.6E-14 3.5E-19 148.6 21.1 218 128-393 201-425 (429)
207 KOG2111 Uncharacterized conser 99.6 1.3E-12 2.8E-17 119.7 29.6 300 132-515 7-324 (346)
208 KOG0771 Prolactin regulatory e 99.6 7.1E-15 1.5E-19 139.3 14.9 196 234-516 148-357 (398)
209 KOG2110 Uncharacterized conser 99.6 2.7E-13 5.8E-18 126.4 24.2 177 152-373 69-250 (391)
210 KOG0771 Prolactin regulatory e 99.6 1.6E-14 3.4E-19 136.9 15.2 197 177-428 148-356 (398)
211 KOG1240 Protein kinase contain 99.6 2.4E-13 5.3E-18 143.8 25.2 236 165-436 1040-1283(1431)
212 KOG1517 Guanine nucleotide bin 99.6 1.8E-13 3.9E-18 142.6 23.6 278 175-540 1066-1370(1387)
213 KOG3881 Uncharacterized conser 99.6 1.4E-13 2.9E-18 129.2 20.6 269 132-445 57-339 (412)
214 KOG3881 Uncharacterized conser 99.6 1.1E-13 2.3E-18 129.9 19.7 228 130-393 105-341 (412)
215 PF08662 eIF2A: Eukaryotic tra 99.6 4.1E-13 8.8E-18 121.9 20.9 158 234-435 9-187 (194)
216 KOG1409 Uncharacterized conser 99.5 1.5E-12 3.2E-17 120.3 21.3 247 129-430 23-274 (404)
217 KOG2139 WD40 repeat protein [G 99.5 2.1E-12 4.6E-17 120.1 22.1 206 171-418 96-303 (445)
218 PRK03629 tolB translocation pr 99.5 2.2E-12 4.7E-17 132.6 24.8 218 129-393 197-427 (429)
219 PRK04922 tolB translocation pr 99.5 7.1E-12 1.5E-16 129.3 27.3 215 152-428 185-413 (433)
220 KOG1310 WD40 repeat protein [G 99.5 2.5E-13 5.4E-18 132.3 14.8 232 123-375 43-307 (758)
221 KOG2111 Uncharacterized conser 99.5 1.3E-11 2.8E-16 113.2 24.9 178 152-373 76-258 (346)
222 PRK03629 tolB translocation pr 99.5 1.6E-11 3.4E-16 126.2 28.8 220 152-434 180-413 (429)
223 KOG2139 WD40 repeat protein [G 99.5 2.3E-11 4.9E-16 113.3 25.5 201 133-370 101-308 (445)
224 PRK05137 tolB translocation pr 99.5 1.8E-11 4E-16 126.4 28.2 217 152-430 183-416 (435)
225 PF02239 Cytochrom_D1: Cytochr 99.5 5.2E-11 1.1E-15 119.0 30.0 317 146-516 10-350 (369)
226 PF08662 eIF2A: Eukaryotic tra 99.5 6.4E-12 1.4E-16 114.0 21.4 117 230-379 59-186 (194)
227 KOG2321 WD40 repeat protein [G 99.5 6E-12 1.3E-16 123.6 21.6 254 127-426 48-343 (703)
228 KOG1310 WD40 repeat protein [G 99.5 6.9E-13 1.5E-17 129.3 14.8 208 292-516 43-306 (758)
229 KOG2321 WD40 repeat protein [G 99.5 5.6E-12 1.2E-16 123.8 21.1 266 229-514 50-344 (703)
230 PRK02889 tolB translocation pr 99.5 3E-11 6.4E-16 124.3 27.4 222 152-434 177-410 (427)
231 KOG4497 Uncharacterized conser 99.5 1.9E-11 4E-16 112.4 22.4 253 131-431 49-396 (447)
232 PRK04922 tolB translocation pr 99.5 1.6E-11 3.4E-16 126.8 24.4 217 128-393 201-432 (433)
233 PRK02889 tolB translocation pr 99.5 1.7E-11 3.6E-16 126.2 24.2 221 128-393 193-424 (427)
234 KOG1272 WD40-repeat-containing 99.5 2.8E-13 6.1E-18 129.6 9.8 231 130-424 129-360 (545)
235 KOG0974 WD-repeat protein WDR6 99.4 8.3E-12 1.8E-16 130.8 20.8 264 143-516 18-291 (967)
236 KOG0309 Conserved WD40 repeat- 99.4 1.8E-12 4E-17 130.4 14.0 297 134-515 28-341 (1081)
237 PRK05137 tolB translocation pr 99.4 5.7E-11 1.2E-15 122.8 25.2 215 128-393 199-432 (435)
238 PF02239 Cytochrom_D1: Cytochr 99.4 8.7E-10 1.9E-14 110.2 31.4 254 133-436 39-357 (369)
239 PF10282 Lactonase: Lactonase, 99.4 4.8E-09 1E-13 104.9 33.6 264 130-433 36-331 (345)
240 KOG1334 WD40 repeat protein [G 99.4 6.5E-12 1.4E-16 121.1 12.2 271 125-430 180-470 (559)
241 TIGR02800 propeller_TolB tol-p 99.4 7.8E-10 1.7E-14 114.1 28.7 213 152-426 171-397 (417)
242 PRK01029 tolB translocation pr 99.3 1.3E-09 2.8E-14 111.7 27.5 231 152-435 166-412 (428)
243 KOG0280 Uncharacterized conser 99.3 3.6E-10 7.9E-15 102.7 20.2 210 152-393 47-263 (339)
244 COG4946 Uncharacterized protei 99.3 2.3E-08 5E-13 96.7 32.2 207 138-393 274-498 (668)
245 KOG2315 Predicted translation 99.3 7.6E-09 1.6E-13 102.1 29.2 317 133-516 37-393 (566)
246 KOG0974 WD-repeat protein WDR6 99.3 9.4E-11 2E-15 123.0 16.8 190 188-428 99-290 (967)
247 PRK04792 tolB translocation pr 99.3 4.2E-09 9.2E-14 108.8 29.0 220 152-434 199-432 (448)
248 KOG4547 WD40 repeat-containing 99.3 4E-10 8.7E-15 111.8 20.1 196 188-427 5-221 (541)
249 PRK00178 tolB translocation pr 99.3 3.6E-09 7.7E-14 109.5 28.5 215 152-428 180-408 (430)
250 PRK04792 tolB translocation pr 99.3 1.2E-09 2.5E-14 113.0 24.2 215 130-393 217-446 (448)
251 PF10282 Lactonase: Lactonase, 99.2 4.2E-08 9E-13 98.1 32.7 283 151-514 13-323 (345)
252 TIGR02800 propeller_TolB tol-p 99.2 3.8E-09 8.2E-14 109.0 25.9 182 298-542 188-385 (417)
253 PRK00178 tolB translocation pr 99.2 3.3E-09 7.2E-14 109.8 24.9 217 128-393 196-427 (430)
254 KOG1064 RAVE (regulator of V-A 99.2 1.1E-10 2.3E-15 128.2 13.5 193 175-436 2210-2408(2439)
255 PRK01029 tolB translocation pr 99.2 6.4E-09 1.4E-13 106.7 26.0 223 131-393 185-424 (428)
256 KOG4547 WD40 repeat-containing 99.2 1.5E-09 3.3E-14 107.7 20.0 197 245-514 7-221 (541)
257 COG5354 Uncharacterized protei 99.2 1.8E-08 3.9E-13 98.4 26.5 326 129-517 31-399 (561)
258 KOG0280 Uncharacterized conser 99.2 3.6E-09 7.7E-14 96.4 19.6 195 196-431 44-247 (339)
259 KOG1064 RAVE (regulator of V-A 99.2 3.4E-10 7.3E-15 124.4 14.5 207 118-380 2196-2407(2439)
260 TIGR03300 assembly_YfgL outer 99.2 1.2E-07 2.6E-12 96.4 32.1 299 142-510 65-376 (377)
261 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.3E-07 2.9E-12 92.5 30.3 242 138-435 53-339 (352)
262 KOG1409 Uncharacterized conser 99.1 2.1E-09 4.6E-14 99.8 16.4 254 165-516 16-273 (404)
263 KOG2315 Predicted translation 99.1 9.1E-09 2E-13 101.6 21.7 239 134-432 129-395 (566)
264 PLN02919 haloacid dehalogenase 99.1 1E-07 2.2E-12 107.7 32.3 263 134-430 571-892 (1057)
265 KOG1354 Serine/threonine prote 99.1 1.2E-08 2.6E-13 94.9 20.1 235 173-427 25-302 (433)
266 COG2706 3-carboxymuconate cycl 99.1 8E-07 1.7E-11 84.0 31.9 268 121-431 30-328 (346)
267 KOG1912 WD40 repeat protein [G 99.1 3E-07 6.5E-12 94.2 30.4 356 133-540 18-540 (1062)
268 COG2706 3-carboxymuconate cycl 99.1 1.3E-06 2.7E-11 82.7 32.3 240 150-427 15-275 (346)
269 PF04762 IKI3: IKI3 family; I 99.0 3.8E-07 8.3E-12 101.2 32.0 265 131-429 22-336 (928)
270 PF04762 IKI3: IKI3 family; I 99.0 3.5E-07 7.5E-12 101.6 30.9 326 129-514 74-457 (928)
271 TIGR03300 assembly_YfgL outer 99.0 4.4E-07 9.5E-12 92.3 29.7 292 188-546 65-374 (377)
272 KOG1354 Serine/threonine prote 99.0 3.6E-08 7.8E-13 91.7 17.9 266 130-430 25-363 (433)
273 KOG3914 WD repeat protein WDR4 99.0 4.4E-09 9.4E-14 99.9 12.1 166 232-436 64-233 (390)
274 PLN02919 haloacid dehalogenase 99.0 1.5E-06 3.2E-11 98.4 33.5 276 174-516 568-891 (1057)
275 KOG0309 Conserved WD40 repeat- 98.9 7E-09 1.5E-13 105.1 12.3 253 133-427 70-340 (1081)
276 PF15492 Nbas_N: Neuroblastoma 98.9 3.4E-06 7.3E-11 77.5 28.1 249 136-436 3-269 (282)
277 KOG4532 WD40-like repeat conta 98.9 4.1E-07 8.9E-12 82.1 20.6 228 152-436 53-292 (344)
278 KOG2314 Translation initiation 98.9 7E-07 1.5E-11 88.3 24.0 306 134-542 214-558 (698)
279 KOG3914 WD repeat protein WDR4 98.9 6.5E-08 1.4E-12 92.1 15.6 163 133-337 65-231 (390)
280 TIGR02658 TTQ_MADH_Hv methylam 98.9 1.7E-05 3.7E-10 77.9 32.1 261 151-516 27-333 (352)
281 KOG4532 WD40-like repeat conta 98.8 8.7E-07 1.9E-11 80.1 20.0 212 141-393 83-312 (344)
282 KOG4714 Nucleoporin [Nuclear s 98.8 6.5E-08 1.4E-12 86.8 12.8 207 245-511 103-316 (319)
283 KOG2041 WD40 repeat protein [G 98.8 5.9E-07 1.3E-11 91.2 20.8 303 174-512 15-336 (1189)
284 PRK04043 tolB translocation pr 98.8 1.2E-06 2.5E-11 89.5 23.1 191 132-372 189-401 (419)
285 COG5354 Uncharacterized protei 98.8 3.1E-06 6.7E-11 83.1 24.5 282 131-473 72-395 (561)
286 PF08450 SGL: SMP-30/Gluconola 98.7 4.6E-05 1E-09 72.4 30.2 212 135-392 4-233 (246)
287 KOG4190 Uncharacterized conser 98.7 5.4E-08 1.2E-12 95.7 9.6 174 228-436 733-916 (1034)
288 PRK11138 outer membrane biogen 98.7 3.1E-05 6.7E-10 79.1 29.4 236 143-435 121-362 (394)
289 PRK04043 tolB translocation pr 98.7 2.7E-05 6E-10 79.5 28.6 212 152-428 170-402 (419)
290 KOG2695 WD40 repeat protein [G 98.7 8.1E-08 1.7E-12 89.5 8.8 126 300-437 253-387 (425)
291 KOG4714 Nucleoporin [Nuclear s 98.7 5.5E-07 1.2E-11 81.0 13.5 73 300-372 180-255 (319)
292 KOG2041 WD40 repeat protein [G 98.7 2.2E-06 4.7E-11 87.2 18.9 265 124-428 65-339 (1189)
293 COG4946 Uncharacterized protei 98.6 1.3E-05 2.9E-10 78.1 22.8 138 299-450 359-501 (668)
294 KOG4190 Uncharacterized conser 98.6 2E-07 4.4E-12 91.7 10.5 244 124-424 729-986 (1034)
295 KOG2695 WD40 repeat protein [G 98.6 2.7E-07 5.7E-12 86.2 10.4 175 180-393 218-402 (425)
296 KOG1920 IkappaB kinase complex 98.6 3.4E-05 7.4E-10 83.6 26.8 224 174-429 69-325 (1265)
297 PRK11138 outer membrane biogen 98.6 6.6E-05 1.4E-09 76.7 28.6 190 188-433 120-319 (394)
298 COG5170 CDC55 Serine/threonine 98.6 1.2E-06 2.5E-11 80.7 13.6 254 229-540 25-356 (460)
299 PF15492 Nbas_N: Neuroblastoma 98.6 1.6E-05 3.4E-10 73.2 20.8 210 134-381 47-269 (282)
300 COG5170 CDC55 Serine/threonine 98.6 9.3E-07 2E-11 81.4 12.8 243 173-434 26-318 (460)
301 KOG1912 WD40 repeat protein [G 98.6 9.9E-06 2.1E-10 83.4 21.1 243 229-514 14-305 (1062)
302 PF00400 WD40: WD domain, G-be 98.5 3.6E-07 7.8E-12 59.1 6.5 39 331-369 1-39 (39)
303 PF13360 PQQ_2: PQQ-like domai 98.5 0.00012 2.5E-09 69.1 26.0 220 152-433 4-237 (238)
304 KOG0882 Cyclophilin-related pe 98.5 2.4E-06 5.3E-11 82.5 13.6 232 124-379 47-313 (558)
305 PF08450 SGL: SMP-30/Gluconola 98.5 0.00015 3.2E-09 68.9 26.2 208 178-445 4-232 (246)
306 KOG1832 HIV-1 Vpr-binding prot 98.5 8.2E-08 1.8E-12 99.4 3.3 218 163-449 1091-1313(1516)
307 PF07433 DUF1513: Protein of u 98.5 0.00012 2.6E-09 69.5 23.9 237 230-542 4-277 (305)
308 KOG1645 RING-finger-containing 98.5 6E-05 1.3E-09 72.2 21.7 124 129-267 134-272 (463)
309 PF13360 PQQ_2: PQQ-like domai 98.4 6.1E-05 1.3E-09 71.1 21.9 190 310-516 35-233 (238)
310 PF00400 WD40: WD domain, G-be 98.4 7.8E-07 1.7E-11 57.5 6.0 39 373-424 1-39 (39)
311 KOG1832 HIV-1 Vpr-binding prot 98.4 1.3E-07 2.7E-12 98.1 3.3 195 287-515 1089-1293(1516)
312 PF06433 Me-amine-dh_H: Methyl 98.4 0.00029 6.3E-09 67.7 24.7 246 136-436 41-330 (342)
313 PF11768 DUF3312: Protein of u 98.4 0.0031 6.7E-08 64.2 32.9 120 300-434 206-337 (545)
314 PF07433 DUF1513: Protein of u 98.3 0.0016 3.5E-08 62.0 27.8 210 175-436 6-257 (305)
315 PRK02888 nitrous-oxide reducta 98.3 0.00025 5.4E-09 73.6 23.1 104 307-427 284-405 (635)
316 KOG0882 Cyclophilin-related pe 98.3 6.1E-06 1.3E-10 79.8 10.4 218 229-516 8-234 (558)
317 KOG2114 Vacuolar assembly/sort 98.3 0.00029 6.2E-09 74.0 23.0 218 136-386 29-259 (933)
318 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0017 3.8E-08 59.0 24.9 141 189-372 24-166 (354)
319 PF11768 DUF3312: Protein of u 98.2 0.00029 6.2E-09 71.4 21.8 74 298-373 258-331 (545)
320 KOG3621 WD40 repeat-containing 98.2 0.0002 4.4E-09 73.6 20.2 215 173-435 33-254 (726)
321 KOG2314 Translation initiation 98.2 0.00031 6.7E-09 70.1 20.1 233 135-426 310-573 (698)
322 KOG1275 PAB-dependent poly(A) 98.2 4.1E-05 8.9E-10 80.5 14.7 180 188-424 147-340 (1118)
323 KOG1920 IkappaB kinase complex 98.2 0.00066 1.4E-08 74.0 23.7 210 131-374 69-325 (1265)
324 KOG2066 Vacuolar assembly/sort 98.1 0.00027 5.9E-09 73.6 19.8 176 142-373 49-235 (846)
325 KOG1645 RING-finger-containing 98.1 0.00023 5.1E-09 68.3 17.7 249 125-426 188-461 (463)
326 KOG2066 Vacuolar assembly/sort 98.1 0.00011 2.4E-09 76.5 16.2 152 229-436 38-197 (846)
327 KOG1275 PAB-dependent poly(A) 98.1 7.3E-05 1.6E-09 78.6 14.7 180 310-511 146-340 (1118)
328 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0034 7.4E-08 63.0 25.9 193 139-375 1-222 (353)
329 KOG1008 Uncharacterized conser 98.0 1.7E-06 3.8E-11 87.1 2.0 207 175-427 58-276 (783)
330 PF08596 Lgl_C: Lethal giant l 98.0 0.0057 1.2E-07 61.8 25.9 157 232-390 3-199 (395)
331 KOG2114 Vacuolar assembly/sort 98.0 0.0014 3E-08 69.1 21.6 150 237-427 30-202 (933)
332 KOG1008 Uncharacterized conser 98.0 3.3E-06 7.2E-11 85.2 2.6 158 230-425 56-224 (783)
333 PF04841 Vps16_N: Vps16, N-ter 98.0 0.012 2.6E-07 60.2 28.4 207 152-393 62-269 (410)
334 cd00216 PQQ_DH Dehydrogenases 98.0 0.033 7.1E-07 58.6 32.1 291 188-516 61-427 (488)
335 PF06977 SdiA-regulated: SdiA- 97.9 0.0061 1.3E-07 57.1 22.8 218 126-368 17-247 (248)
336 KOG3621 WD40 repeat-containing 97.8 0.0051 1.1E-07 63.6 22.4 123 129-262 32-155 (726)
337 COG0823 TolB Periplasmic compo 97.7 0.0019 4.2E-08 65.8 17.6 199 152-393 174-379 (425)
338 KOG4640 Anaphase-promoting com 97.7 0.00016 3.5E-09 73.3 9.5 93 300-393 21-115 (665)
339 PF08553 VID27: VID27 cytoplas 97.7 0.0017 3.8E-08 70.0 17.6 150 140-328 491-646 (794)
340 KOG3617 WD40 and TPR repeat-co 97.7 0.00031 6.7E-09 73.4 10.8 111 234-373 19-133 (1416)
341 PF08596 Lgl_C: Lethal giant l 97.7 0.025 5.5E-07 57.1 24.1 231 175-436 3-300 (395)
342 PF06977 SdiA-regulated: SdiA- 97.6 0.03 6.6E-07 52.5 22.6 206 173-423 21-247 (248)
343 PF04053 Coatomer_WDAD: Coatom 97.6 0.016 3.5E-07 59.4 22.0 148 167-371 26-173 (443)
344 COG3386 Gluconolactonase [Carb 97.5 0.059 1.3E-06 52.4 24.0 213 136-392 30-263 (307)
345 PRK02888 nitrous-oxide reducta 97.5 0.0082 1.8E-07 62.7 18.7 116 230-360 320-450 (635)
346 PF03178 CPSF_A: CPSF A subuni 97.5 0.088 1.9E-06 52.1 25.8 226 152-423 3-262 (321)
347 COG3391 Uncharacterized conser 97.5 0.092 2E-06 53.3 26.1 219 134-393 77-308 (381)
348 cd00216 PQQ_DH Dehydrogenases 97.5 0.2 4.4E-06 52.7 30.6 261 189-483 111-434 (488)
349 COG0823 TolB Periplasmic compo 97.5 0.0083 1.8E-07 61.2 17.9 188 130-361 192-389 (425)
350 PF04053 Coatomer_WDAD: Coatom 97.4 0.017 3.6E-07 59.3 19.3 143 230-427 32-174 (443)
351 KOG4640 Anaphase-promoting com 97.4 0.0008 1.7E-08 68.5 9.2 94 230-351 20-115 (665)
352 PF08553 VID27: VID27 cytoplas 97.4 0.0074 1.6E-07 65.3 17.0 123 289-426 514-647 (794)
353 PF04841 Vps16_N: Vps16, N-ter 97.3 0.23 5E-06 50.8 26.9 184 199-436 62-256 (410)
354 COG3391 Uncharacterized conser 97.3 0.23 5E-06 50.4 29.4 245 132-436 32-293 (381)
355 PF14583 Pectate_lyase22: Olig 97.3 0.031 6.7E-07 55.1 19.2 270 232-541 37-370 (386)
356 PF06433 Me-amine-dh_H: Methyl 97.3 0.03 6.6E-07 54.2 18.7 216 135-381 99-330 (342)
357 smart00320 WD40 WD40 repeats. 97.3 0.00086 1.9E-08 41.8 5.9 39 331-369 2-40 (40)
358 PF14583 Pectate_lyase22: Olig 97.2 0.18 4E-06 49.8 23.4 159 230-425 187-380 (386)
359 PF02897 Peptidase_S9_N: Proly 97.2 0.32 7E-06 50.0 30.4 251 135-432 128-410 (414)
360 KOG1897 Damage-specific DNA bi 97.2 0.48 1E-05 51.6 33.3 357 135-544 492-891 (1096)
361 COG3386 Gluconolactonase [Carb 97.2 0.091 2E-06 51.1 21.1 133 300-447 111-264 (307)
362 smart00320 WD40 WD40 repeats. 97.2 0.001 2.2E-08 41.5 5.3 38 290-327 3-40 (40)
363 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.029 6.3E-07 44.8 14.3 102 233-367 2-110 (111)
364 PF00780 CNH: CNH domain; Int 97.1 0.31 6.6E-06 47.0 26.9 243 140-436 5-265 (275)
365 KOG4649 PQQ (pyrrolo-quinoline 97.1 0.24 5.2E-06 45.6 21.8 119 237-383 17-135 (354)
366 PHA02713 hypothetical protein; 97.1 0.027 5.8E-07 60.1 17.3 92 322-430 433-537 (557)
367 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.094 2E-06 41.9 15.7 104 302-421 2-109 (111)
368 KOG2444 WD40 repeat protein [G 97.0 0.0012 2.6E-08 59.1 5.5 143 190-372 32-178 (238)
369 COG3490 Uncharacterized protei 97.0 0.3 6.5E-06 45.6 22.7 159 237-433 120-317 (366)
370 KOG3617 WD40 and TPR repeat-co 97.0 0.0016 3.4E-08 68.3 6.5 108 304-426 20-131 (1416)
371 PF03178 CPSF_A: CPSF A subuni 96.9 0.11 2.5E-06 51.3 19.0 120 126-262 84-203 (321)
372 PRK13616 lipoprotein LpqB; Pro 96.8 0.097 2.1E-06 55.9 19.1 88 302-393 399-506 (591)
373 KOG2395 Protein involved in va 96.8 0.064 1.4E-06 54.1 16.1 122 289-426 366-500 (644)
374 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.97 2.1E-05 47.9 26.1 27 410-436 474-500 (527)
375 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.7 1.2 2.5E-05 47.3 31.0 178 188-376 120-338 (527)
376 KOG2395 Protein involved in va 96.7 0.048 1E-06 54.9 13.9 150 140-328 343-499 (644)
377 PF00780 CNH: CNH domain; Int 96.6 0.68 1.5E-05 44.5 28.6 160 188-379 7-173 (275)
378 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 1 2.2E-05 45.7 27.7 94 341-436 307-408 (415)
379 PF07995 GSDH: Glucose / Sorbo 96.6 0.91 2E-05 45.0 22.8 71 476-547 244-331 (331)
380 PRK13616 lipoprotein LpqB; Pro 96.5 0.24 5.2E-06 53.0 19.0 103 300-422 350-472 (591)
381 PF05694 SBP56: 56kDa selenium 96.2 0.84 1.8E-05 45.8 19.4 245 245-540 89-392 (461)
382 PF00930 DPPIV_N: Dipeptidyl p 96.2 1.6 3.6E-05 43.7 27.3 230 131-393 43-337 (353)
383 KOG4499 Ca2+-binding protein R 96.1 1 2.2E-05 41.0 19.5 93 300-392 158-262 (310)
384 COG3490 Uncharacterized protei 96.1 0.93 2E-05 42.5 17.7 107 230-360 67-180 (366)
385 KOG3630 Nuclear pore complex, 95.9 0.1 2.2E-06 57.3 12.6 155 175-359 102-261 (1405)
386 PF14655 RAB3GAP2_N: Rab3 GTPa 95.9 2.3 5E-05 43.1 22.1 40 384-436 308-347 (415)
387 PF02897 Peptidase_S9_N: Proly 95.8 2.8 6E-05 43.1 27.9 204 178-436 128-367 (414)
388 KOG4441 Proteins containing BT 95.8 0.75 1.6E-05 49.2 18.5 218 152-430 302-550 (571)
389 PF12894 Apc4_WD40: Anaphase-p 95.8 0.026 5.7E-07 37.6 4.8 32 229-261 10-41 (47)
390 KOG2079 Vacuolar assembly/sort 95.7 0.031 6.8E-07 60.8 7.9 105 310-426 98-203 (1206)
391 PF12894 Apc4_WD40: Anaphase-p 95.7 0.036 7.8E-07 37.0 5.4 34 341-375 11-44 (47)
392 KOG1897 Damage-specific DNA bi 95.7 4.4 9.4E-05 44.6 30.8 321 130-515 583-944 (1096)
393 TIGR03074 PQQ_membr_DH membran 95.7 4.2 9.2E-05 45.0 24.1 119 311-437 194-355 (764)
394 PHA02713 hypothetical protein; 95.5 0.25 5.4E-06 52.8 13.9 72 310-383 463-545 (557)
395 COG3204 Uncharacterized protei 95.3 2.7 5.8E-05 39.9 21.3 173 130-329 85-263 (316)
396 KOG2444 WD40 repeat protein [G 95.2 0.068 1.5E-06 48.2 7.0 74 310-383 69-144 (238)
397 TIGR02604 Piru_Ver_Nterm putat 95.2 1.1 2.4E-05 45.2 16.7 110 131-248 14-140 (367)
398 KOG2079 Vacuolar assembly/sort 95.1 0.13 2.8E-06 56.3 9.9 98 245-370 101-202 (1206)
399 PF07995 GSDH: Glucose / Sorbo 95.1 4 8.6E-05 40.5 27.4 260 132-421 3-330 (331)
400 PF15390 DUF4613: Domain of un 94.9 0.78 1.7E-05 47.4 14.3 114 300-426 57-186 (671)
401 PF05694 SBP56: 56kDa selenium 94.8 0.69 1.5E-05 46.4 13.3 112 151-265 222-346 (461)
402 PF08728 CRT10: CRT10; InterP 94.6 0.92 2E-05 48.8 14.7 119 245-370 116-245 (717)
403 PF15390 DUF4613: Domain of un 94.6 3.8 8.2E-05 42.6 18.2 127 174-329 57-186 (671)
404 KOG1916 Nuclear protein, conta 94.6 0.0093 2E-07 63.4 -0.2 205 299-512 132-373 (1283)
405 PF10647 Gmad1: Lipoprotein Lp 94.5 3.1 6.7E-05 39.5 16.9 134 231-393 24-175 (253)
406 TIGR02604 Piru_Ver_Nterm putat 94.5 1.4 3.1E-05 44.4 15.5 91 300-393 72-193 (367)
407 TIGR03074 PQQ_membr_DH membran 94.5 8.3 0.00018 42.7 22.1 107 320-435 335-486 (764)
408 KOG3630 Nuclear pore complex, 94.4 0.56 1.2E-05 51.9 12.4 92 300-393 156-253 (1405)
409 TIGR03606 non_repeat_PQQ dehyd 94.4 4.7 0.0001 41.5 18.6 65 131-195 30-103 (454)
410 PHA03098 kelch-like protein; P 94.3 3.3 7.1E-05 44.2 18.4 104 310-430 389-515 (534)
411 PF02333 Phytase: Phytase; In 93.9 7.6 0.00017 38.8 20.2 119 300-428 156-292 (381)
412 PHA03098 kelch-like protein; P 93.6 2.6 5.7E-05 45.0 16.2 63 310-374 437-514 (534)
413 PF08728 CRT10: CRT10; InterP 93.5 5 0.00011 43.4 17.4 118 300-425 101-245 (717)
414 KOG2280 Vacuolar assembly/sort 93.4 12 0.00026 40.2 19.5 184 135-338 48-255 (829)
415 TIGR03118 PEPCTERM_chp_1 conse 93.3 8 0.00017 37.0 26.4 243 135-393 27-307 (336)
416 KOG4441 Proteins containing BT 93.3 5.5 0.00012 42.7 17.6 189 188-432 285-505 (571)
417 COG3204 Uncharacterized protei 93.2 6.2 0.00013 37.5 15.5 114 300-426 86-210 (316)
418 PF14870 PSII_BNR: Photosynthe 93.1 9 0.00019 37.2 25.1 150 230-423 144-301 (302)
419 KOG2247 WD40 repeat-containing 93.1 0.0091 2E-07 59.4 -3.1 150 174-367 35-184 (615)
420 PF05096 Glu_cyclase_2: Glutam 92.9 8.4 0.00018 36.3 18.4 117 302-435 47-166 (264)
421 KOG1916 Nuclear protein, conta 92.8 0.16 3.5E-06 54.4 5.2 99 152-264 154-268 (1283)
422 PF12234 Rav1p_C: RAVE protein 92.7 4 8.8E-05 43.6 15.3 121 343-512 31-155 (631)
423 TIGR03118 PEPCTERM_chp_1 conse 92.6 10 0.00022 36.4 20.5 229 174-436 23-289 (336)
424 PF10313 DUF2415: Uncharacteri 92.5 0.48 1E-05 30.7 5.1 31 300-330 1-34 (43)
425 KOG4499 Ca2+-binding protein R 92.4 8.6 0.00019 35.2 18.1 102 232-352 159-264 (310)
426 PF10313 DUF2415: Uncharacteri 92.2 0.51 1.1E-05 30.5 4.9 31 342-372 1-34 (43)
427 PF14870 PSII_BNR: Photosynthe 92.1 13 0.00027 36.3 23.8 93 300-393 145-242 (302)
428 KOG2247 WD40 repeat-containing 91.9 0.072 1.6E-06 53.3 1.2 152 230-426 34-188 (615)
429 PHA02790 Kelch-like protein; P 91.8 7.6 0.00017 40.8 16.3 100 310-429 362-473 (480)
430 PF10647 Gmad1: Lipoprotein Lp 91.5 13 0.00028 35.3 20.8 109 301-425 25-143 (253)
431 KOG2377 Uncharacterized conser 91.4 5.1 0.00011 40.3 13.2 138 188-359 33-171 (657)
432 PF10168 Nup88: Nuclear pore c 91.1 28 0.0006 38.4 21.6 92 230-331 84-181 (717)
433 KOG2280 Vacuolar assembly/sort 90.7 27 0.00059 37.6 20.2 31 230-262 83-113 (829)
434 PF12234 Rav1p_C: RAVE protein 90.6 9.5 0.00021 40.9 15.4 110 304-428 34-158 (631)
435 COG5167 VID27 Protein involved 90.4 9.3 0.0002 39.1 14.1 152 136-329 473-632 (776)
436 PHA02790 Kelch-like protein; P 90.3 9.4 0.0002 40.1 15.3 60 310-374 407-473 (480)
437 KOG1900 Nuclear pore complex, 90.0 4.8 0.0001 45.8 12.9 181 134-330 82-273 (1311)
438 PF07569 Hira: TUP1-like enhan 89.9 2.2 4.7E-05 39.4 9.0 67 307-374 18-98 (219)
439 PF05096 Glu_cyclase_2: Glutam 89.9 18 0.00038 34.2 20.6 161 232-436 46-213 (264)
440 COG4590 ABC-type uncharacteriz 89.8 1.1 2.5E-05 44.6 7.3 181 165-379 212-394 (733)
441 PF14781 BBS2_N: Ciliary BBSom 88.4 14 0.00029 30.9 12.9 112 134-261 2-125 (136)
442 COG5167 VID27 Protein involved 87.7 11 0.00024 38.5 12.6 120 289-426 500-632 (776)
443 PF10168 Nup88: Nuclear pore c 87.4 25 0.00055 38.7 16.4 28 300-328 85-112 (717)
444 PF07569 Hira: TUP1-like enhan 87.3 5.3 0.00011 36.9 9.7 71 349-433 18-102 (219)
445 PRK10115 protease 2; Provision 86.9 54 0.0012 36.2 31.0 68 132-207 128-208 (686)
446 PF13449 Phytase-like: Esteras 86.8 34 0.00074 33.8 18.4 122 229-361 18-166 (326)
447 PF12657 TFIIIC_delta: Transcr 86.0 5.7 0.00012 35.1 8.9 38 384-428 86-123 (173)
448 COG3823 Glutamine cyclotransfe 86.0 26 0.00057 31.7 13.2 84 309-393 138-238 (262)
449 PF11635 Med16: Mediator compl 85.6 66 0.0014 36.0 22.8 217 143-366 64-345 (753)
450 PF14727 PHTB1_N: PTHB1 N-term 85.5 46 0.001 34.0 25.7 157 187-370 36-203 (418)
451 KOG2377 Uncharacterized conser 85.5 30 0.00066 35.0 14.0 119 299-430 66-189 (657)
452 PF14761 HPS3_N: Hermansky-Pud 85.5 23 0.00049 32.3 12.3 56 312-368 29-92 (215)
453 TIGR03547 muta_rot_YjhT mutatr 85.4 41 0.00088 33.5 15.9 39 322-362 291-331 (346)
454 PF11715 Nup160: Nucleoporin N 85.3 9.9 0.00021 40.7 12.1 38 300-337 215-256 (547)
455 PF10214 Rrn6: RNA polymerase 85.0 71 0.0015 35.8 25.6 130 229-372 144-277 (765)
456 PLN02153 epithiospecifier prot 84.6 45 0.00097 33.1 19.7 64 310-375 137-229 (341)
457 PF05935 Arylsulfotrans: Aryls 84.3 52 0.0011 34.5 16.5 81 303-384 193-314 (477)
458 PLN02153 epithiospecifier prot 84.1 47 0.001 33.0 19.2 53 321-374 217-287 (341)
459 COG1520 FOG: WD40-like repeat 83.6 52 0.0011 33.1 22.1 113 310-436 111-227 (370)
460 PF11725 AvrE: Pathogenicity f 83.6 1.1E+02 0.0023 36.7 19.5 64 485-548 702-769 (1774)
461 COG1520 FOG: WD40-like repeat 83.5 53 0.0011 33.1 19.1 112 310-437 68-182 (370)
462 PRK14131 N-acetylneuraminic ac 82.5 58 0.0013 32.9 15.9 38 323-362 314-353 (376)
463 TIGR03548 mutarot_permut cycli 82.3 53 0.0011 32.3 15.7 22 240-262 170-195 (323)
464 KOG1983 Tomosyn and related SN 81.9 47 0.001 38.3 15.9 32 173-207 35-66 (993)
465 PF14781 BBS2_N: Ciliary BBSom 81.7 30 0.00064 28.9 13.8 117 305-434 4-133 (136)
466 PF08801 Nucleoporin_N: Nup133 81.6 67 0.0015 33.0 17.4 31 342-372 190-220 (422)
467 PRK10115 protease 2; Provision 81.4 92 0.002 34.4 30.7 195 176-426 129-344 (686)
468 TIGR02276 beta_rpt_yvtn 40-res 81.1 7.8 0.00017 24.5 5.9 31 351-381 1-32 (42)
469 PF11715 Nup160: Nucleoporin N 81.0 6.9 0.00015 41.9 8.7 71 309-379 156-256 (547)
470 PRK13684 Ycf48-like protein; P 80.5 64 0.0014 32.0 23.2 109 300-425 215-330 (334)
471 PRK13684 Ycf48-like protein; P 79.8 67 0.0015 31.8 29.6 105 300-421 173-283 (334)
472 PF13449 Phytase-like: Esteras 79.8 66 0.0014 31.8 17.7 114 232-358 86-231 (326)
473 KOG1900 Nuclear pore complex, 79.1 16 0.00035 41.8 10.7 161 315-514 93-273 (1311)
474 PLN02193 nitrile-specifier pro 78.9 89 0.0019 32.7 17.3 65 310-375 328-414 (470)
475 PLN02193 nitrile-specifier pro 78.0 94 0.002 32.5 19.8 64 310-375 278-355 (470)
476 PF08801 Nucleoporin_N: Nup133 78.0 87 0.0019 32.2 16.7 29 486-514 190-220 (422)
477 KOG1896 mRNA cleavage and poly 77.8 1.4E+02 0.003 34.4 20.6 140 188-370 1046-1212(1366)
478 PF10214 Rrn6: RNA polymerase 77.7 1.3E+02 0.0028 33.9 23.3 172 128-330 77-277 (765)
479 PF02333 Phytase: Phytase; In 77.6 83 0.0018 31.7 22.1 212 140-379 66-299 (381)
480 PF05935 Arylsulfotrans: Aryls 76.6 1E+02 0.0022 32.3 17.8 116 305-436 153-311 (477)
481 KOG4460 Nuclear pore complex, 76.1 37 0.0008 35.1 11.2 77 300-376 104-203 (741)
482 TIGR03032 conserved hypothetic 75.2 82 0.0018 30.7 12.8 134 233-393 154-314 (335)
483 PF12768 Rax2: Cortical protei 74.8 44 0.00096 32.1 11.2 72 322-393 17-98 (281)
484 KOG1896 mRNA cleavage and poly 74.2 64 0.0014 37.0 13.3 106 143-262 1108-1214(1366)
485 PF12768 Rax2: Cortical protei 72.8 89 0.0019 30.1 12.7 53 197-262 15-73 (281)
486 COG4590 ABC-type uncharacteriz 72.2 39 0.00085 34.2 10.2 164 130-333 220-390 (733)
487 COG4257 Vgb Streptogramin lyas 71.9 93 0.002 29.6 21.9 235 130-429 61-308 (353)
488 PF12657 TFIIIC_delta: Transcr 71.7 57 0.0012 28.7 10.6 29 486-514 86-122 (173)
489 PF14269 Arylsulfotran_2: Aryl 71.0 1.1E+02 0.0023 29.9 15.7 39 344-382 146-184 (299)
490 COG3823 Glutamine cyclotransfe 70.2 86 0.0019 28.5 13.6 50 310-359 185-247 (262)
491 TIGR02276 beta_rpt_yvtn 40-res 69.4 25 0.00055 22.0 6.1 29 409-437 5-33 (42)
492 PF14761 HPS3_N: Hermansky-Pud 68.8 94 0.002 28.4 16.7 122 134-262 21-164 (215)
493 PF03088 Str_synth: Strictosid 68.4 53 0.0011 25.4 8.3 42 318-360 34-75 (89)
494 COG5290 IkappaB kinase complex 66.9 2.1E+02 0.0045 31.6 14.6 91 301-393 248-346 (1243)
495 PF07676 PD40: WD40-like Beta 66.6 20 0.00044 22.3 4.9 29 230-258 8-38 (39)
496 PF07676 PD40: WD40-like Beta 66.5 23 0.00049 22.0 5.1 27 300-326 9-38 (39)
497 KOG1983 Tomosyn and related SN 66.0 1.1E+02 0.0025 35.2 13.8 26 350-375 243-268 (993)
498 PLN00033 photosystem II stabil 65.5 1.6E+02 0.0036 30.0 24.8 238 132-424 138-397 (398)
499 KOG4460 Nuclear pore complex, 65.3 1.1E+02 0.0023 31.9 11.8 97 230-333 103-202 (741)
500 smart00564 PQQ beta-propeller 63.5 18 0.00038 21.4 4.0 25 313-337 8-32 (33)
No 1
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=100.00 E-value=4.4e-57 Score=431.78 Aligned_cols=495 Identities=49% Similarity=0.827 Sum_probs=404.1
Q ss_pred CccCCCCCcccCCCC----CCCCCcCccceeecCcceEEEEEeecCCCCCcccccCeeeeEEEeccccCCCCCCCCCCCC
Q 008939 1 MINTANGMISQSSSS----ANAQSPGLKTYFKTPEGRYKLHYEKTYPSGLLHYAHGKTVTQATLAHLKEKPAPSTPTAPP 76 (548)
Q Consensus 1 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (548)
|++.+++|+++++++ ++||++++|++|+|||++|++++|++|+.+++||-+|+.+.++++|.++..|++.+++.+.
T Consensus 3 ~~~~s~~~~~~~~~~Ss~qsspqs~g~~l~~~tP~~~~~l~~~~t~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ts 82 (636)
T KOG2394|consen 3 MMNLSNGMISGPSSSSSSQSSPQSPGSKLYFKTPEGKYKLHYEKTHQSGLLHYPHGKTVTQVTLAQLGVHPGGATPAGTS 82 (636)
T ss_pred eecCCCccccCCccCcccccCCCCCcccccCCCcchheeeeeecccccccccccCCceeeeccccccCCCCCCCCCcccc
Confidence 788999998887744 6999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCcccCCcchhhhhhhhccCCCCceeeecCCCCCCCcccCCCCcccccccCCCCCCceeEEeCCCCCEEEEecCCeEEEE
Q 008939 77 SSFSASSGVVRSAAAKLLGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFIS 156 (548)
Q Consensus 77 ~~~~~~~g~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~~~~~d~v~vw 156 (548)
++...++| .++......+.+...+++++.+++++.+....+. .+....++..|++|+++.++.+++|
T Consensus 83 i~~~~s~g-~~s~~n~~~~s~~~~~~~~~~g~~~~~~s~~~sg------------~~~~~~~~~~gd~lcFnvg~~lyv~ 149 (636)
T KOG2394|consen 83 ISETGSSG-FRSALNHSSGSGPNNRALAPVGSNGAPHSNANSG------------IVTNTNQSGKGDRLCFNVGRELYVY 149 (636)
T ss_pred cccccccc-chhhccccccCCCCcceeccccCCCccccccccc------------ceeeccccCCCCEEEEecCCeEEEE
Confidence 88888899 7888999999999999999999998764443322 4456777889999999999999999
Q ss_pred EccC--CCCCCeEEEecCCCCceEEEecCC--CCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcc
Q 008939 157 DLNS--QDKDPIKSIHFSNSNPVCHAFDQD--AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSR 232 (548)
Q Consensus 157 d~~~--~~~~~i~~~~~~~~~~~~~~~~p~--~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (548)
+++. ...++|.+..|....++|++|+.. ..++..|++|...|+|++.|... .+ .. ..++.+..+.+..
T Consensus 150 ~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~--~~-~s-----klfne~r~i~kts 221 (636)
T KOG2394|consen 150 SYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN--FE-VS-----KLFNEERLINKSS 221 (636)
T ss_pred EccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh--hH-HH-----Hhhhhcccccccc
Confidence 9984 445789999999999999999654 34588899999999999998764 11 11 2255666678899
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcCC-CCCCCCCcccccccceeeeecCCCCCC-CCeeEeeecCCCeEEEEECCC
Q 008939 233 CTSVTWVPGGDGAFVVGHADGNLYVYEKSK-DGAGDSSFPVIKDQTQFSVAHPRYSKS-NPIARWHICQGSINSIAFSTD 310 (548)
Q Consensus 233 v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~sp~ 310 (548)
|+|++|.|.++.+|+++..+|.+++||... .+.....++.+++...|.+...++... +|+..|...++.|+.++|+||
T Consensus 222 vT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D 301 (636)
T KOG2394|consen 222 VTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD 301 (636)
T ss_pred eEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC
Confidence 999999999998999999999999999754 345556778888899999888777544 999999999999999999999
Q ss_pred CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEE
Q 008939 311 GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390 (548)
Q Consensus 311 g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~ 390 (548)
|++||+.+.||.+||||+.+.+++..++.+.+.++|++|||||++|++|++|..|.||.+..++.+++-++|.+||+.|+
T Consensus 302 G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~Va 381 (636)
T KOG2394|consen 302 GKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVA 381 (636)
T ss_pred CceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCC------------------------CCCCCccc-----------eeEEEEEEeCCCeEEEEECCCCeEEee--
Q 008939 391 FDSYWSQP------------------------NSDGTAET-----------VMYRFGSVGQDTRLLLWDLEMDEIVVP-- 433 (548)
Q Consensus 391 ~~p~~~~~------------------------~~dg~~~~-----------~~~~l~s~~~Dg~i~lwd~~~~~~~~~-- 433 (548)
|+||.... ++++..+. +.|+|.++++|.+++|||+....+...
T Consensus 382 FDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~~~p 461 (636)
T KOG2394|consen 382 FDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVPHPP 461 (636)
T ss_pred ecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcccCCc
Confidence 99873110 11222222 779999999999999999987766541
Q ss_pred ---eecCCCCCCcee-------------------cC----------------------------------------CCC-
Q 008939 434 ---LRRGPLGGSPTF-------------------ST----------------------------------------GSQ- 450 (548)
Q Consensus 434 ---~~~~~~~~~~~~-------------------~~----------------------------------------~~~- 450 (548)
++.++.....+. .+ ...
T Consensus 462 ~~~~R~~~n~~~pats~~a~s~a~gg~~~pg~~~~P~~~~r~~slp~s~i~~~ag~~~~~~~~~~~~s~~fs~lt~~~r~ 541 (636)
T KOG2394|consen 462 LYRLRRHPNNSSPATSPGAQSSAHGGEIGPGNTSVPGPCTRSASLPSSAISNRAGTPSVAGDGATASSSGFSFLTSACRK 541 (636)
T ss_pred hhhhhcCCCCCCCccCcccchhcccCcccCCCccCCCCcccCCCCccccccccCCCCCccccccccccccceeechhHhc
Confidence 111111000000 00 000
Q ss_pred ------ccccCCeeeeccc---------------------CCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEEC
Q 008939 451 ------SAHWDNVCPVGTL---------------------QPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR 503 (548)
Q Consensus 451 ------~~~~d~~~~~g~~---------------------~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~ 503 (548)
..+-...+..|.. ..+.++.|++..+|+.+.+.-.+.++.+.|..|+|+|+|.
T Consensus 542 ~~~~e~~hhs~Ghi~~~~s~~~k~~~~~~s~~dp~~~lgT~~cPri~~vpllepl~ckkiaherlTvl~F~edcivtacq 621 (636)
T KOG2394|consen 542 TRGNEKTHHSEGHISIWQSPNKKLNISTISSTDPAKTLGTPLCPRIRDVPLLEPLVCKKIAHERLTVLIFREDCIVTACQ 621 (636)
T ss_pred ccccccccccccccccccCCccccCCcccccCChhHhcCCccCCcccccccccccccchhchhheeeeeehhhhhhhhcc
Confidence 0000111111111 2245777778888888888777899999999999999999
Q ss_pred CCeEEEEeCCCCC
Q 008939 504 EGHIKIWMRPGVA 516 (548)
Q Consensus 504 Dg~I~iW~~~~~~ 516 (548)
||.|+-|-+++..
T Consensus 622 eg~ictw~rpg~~ 634 (636)
T KOG2394|consen 622 EGFICTWGRPGKA 634 (636)
T ss_pred cceEEecCCCCCC
Confidence 9999999998764
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-48 Score=356.04 Aligned_cols=332 Identities=17% Similarity=0.283 Sum_probs=293.7
Q ss_pred CCCccc--ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEE
Q 008939 117 GSSRIG--SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLI 193 (548)
Q Consensus 117 ~~~~~~--~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~ 193 (548)
...+++ +..+.||.++|.+++|+|+|..|+++++| ++|+||+.++. |+..+..|..-+.|++|+|+ +..|++
T Consensus 100 rvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT--p~~t~KgH~~WVlcvawsPD---gk~iAS 174 (480)
T KOG0271|consen 100 RVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET--PLFTCKGHKNWVLCVAWSPD---GKKIAS 174 (480)
T ss_pred cccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC--cceeecCCccEEEEEEECCC---cchhhc
Confidence 333444 67888999999999999999999999999 99999999966 99999999999999999999 778999
Q ss_pred EEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec-----CCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 008939 194 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-----GGDGAFVVGHADGNLYVYEKSKDGAGDS 268 (548)
Q Consensus 194 g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-----~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 268 (548)
|+.||+|++||..+ ++.+...+ ..|+..|++++|.| ... +|++++.||.|+|||+..
T Consensus 175 G~~dg~I~lwdpkt-----g~~~g~~l------~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~------ 236 (480)
T KOG0271|consen 175 GSKDGSIRLWDPKT-----GQQIGRAL------RGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKL------ 236 (480)
T ss_pred cccCCeEEEecCCC-----CCcccccc------cCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccC------
Confidence 99999999999776 22222211 25999999999977 344 899999999999999975
Q ss_pred CcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEE
Q 008939 269 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCA 348 (548)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~ 348 (548)
...+..+.+|+.+|+|+.|--+| +|++++.|++|++|+...|.+...+++|..+|+.++
T Consensus 237 --------------------~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la 295 (480)
T KOG0271|consen 237 --------------------GTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA 295 (480)
T ss_pred --------------------ceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeee
Confidence 35678889999999999997654 899999999999999999999999999999999998
Q ss_pred Ec-----------cC-------------------------CCEEEEEeCCCeEEEEECCC-ceeEEeccCCCCCeEEEEE
Q 008939 349 WS-----------MD-------------------------GKYILTGGEDDLVQVWSMED-RKVVAWGEGHNSWVSGVAF 391 (548)
Q Consensus 349 ~s-----------pd-------------------------g~~l~sgs~dg~I~vwd~~~-~~~~~~~~~h~~~V~~v~~ 391 (548)
++ |. ++.|++|++|.++.+|+-.. .+++.++.+|...|..+.|
T Consensus 296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~f 375 (480)
T KOG0271|consen 296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSF 375 (480)
T ss_pred ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEE
Confidence 77 22 34599999999999999765 4588899999999999999
Q ss_pred ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCCCceecCCCCccccCCeeeecccCCCCcee
Q 008939 392 DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMR 470 (548)
Q Consensus 392 ~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~ 470 (548)
+| |+ ++|++++.|..|++||.++|+.+..++.+ ..+..++++.++ ..+..++.|..+++|
T Consensus 376 SP-------d~------r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs------RLlVS~SkDsTLKvw 436 (480)
T KOG0271|consen 376 SP-------DG------RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS------RLLVSGSKDSTLKVW 436 (480)
T ss_pred CC-------Cc------cEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc------cEEEEcCCCceEEEE
Confidence 99 99 89999999999999999999999999854 677888888776 566788999999999
Q ss_pred ecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 471 DVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 471 d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
|+++.+....+.+|.+.|.++.|+||+ +++++.|..+++|.
T Consensus 437 ~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 437 DVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999995 99999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-44 Score=331.28 Aligned_cols=331 Identities=18% Similarity=0.287 Sum_probs=277.3
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+.-.++..|...|.|++|+|+ +..|++|+-|.++++||+.+. .++... +.|...|.|++|+||+.
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~---g~~l~tGsGD~TvR~WD~~Te-----Tp~~t~-------KgH~~WVlcvawsPDgk 170 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPT---GSRLVTGSGDTTVRLWDLDTE-----TPLFTC-------KGHKNWVLCVAWSPDGK 170 (480)
T ss_pred eeccccCCCCCcEEEEEecCC---CceEEecCCCceEEeeccCCC-----Ccceee-------cCCccEEEEEEECCCcc
Confidence 345567789999999999998 888999999999999999873 122111 24999999999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-----CCCEEEEEE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-----DGTYLATVG 318 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-----~g~~l~s~~ 318 (548)
.|++|+.||.|++||..+++. ....+.+|...|++++|.| ..++||+++
T Consensus 171 -~iASG~~dg~I~lwdpktg~~-------------------------~g~~l~gH~K~It~Lawep~hl~p~~r~las~s 224 (480)
T KOG0271|consen 171 -KIASGSKDGSIRLWDPKTGQQ-------------------------IGRALRGHKKWITALAWEPLHLVPPCRRLASSS 224 (480)
T ss_pred -hhhccccCCeEEEecCCCCCc-------------------------ccccccCcccceeEEeecccccCCCccceeccc
Confidence 999999999999999887433 3455678889999999976 467999999
Q ss_pred CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCC---
Q 008939 319 RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYW--- 395 (548)
Q Consensus 319 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~--- 395 (548)
.||.++|||+.-++++..+.+|..+|+|+.|--+| +|++|+.|++|++|+..+|.+...+++|..+|+.++.+-..
T Consensus 225 kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LR 303 (480)
T KOG0271|consen 225 KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLR 303 (480)
T ss_pred CCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhh
Confidence 99999999999999999999999999999998776 89999999999999999999999999999999999887210
Q ss_pred --------CCCCCCCC------------ccceeEEEEEEeCCCeEEEEECCCCe-EEeeee-cCCCCCCceecCCCCccc
Q 008939 396 --------SQPNSDGT------------AETVMYRFGSVGQDTRLLLWDLEMDE-IVVPLR-RGPLGGSPTFSTGSQSAH 453 (548)
Q Consensus 396 --------~~~~~dg~------------~~~~~~~l~s~~~Dg~i~lwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~ 453 (548)
..|++..+ ......+|++|+.|.++.+|+-...+ ++..+. +...++.+.|+|++
T Consensus 304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~---- 379 (480)
T KOG0271|consen 304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG---- 379 (480)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc----
Confidence 00110000 00001479999999999999976543 444443 33567889999997
Q ss_pred cCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCC--ccccCCCCcEE--
Q 008939 454 WDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA--ESQSSSSETVL-- 527 (548)
Q Consensus 454 ~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~--~~~~~~~~~v~-- 527 (548)
..++.+++|..+++|+.++++.+..|++|.+.|+.++|+.| .|++++.|.+|++|++.+.+ ....+|...|+
T Consensus 380 --r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~v 457 (480)
T KOG0271|consen 380 --RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAV 457 (480)
T ss_pred --cEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEE
Confidence 77889999999999999999999999999999999999998 59999999999999999887 45567999998
Q ss_pred EecCCCCceEeeecc
Q 008939 528 STSSKDKPLLSSKVV 542 (548)
Q Consensus 528 ~~s~d~~~l~s~~~~ 542 (548)
.++|||+.+++|+..
T Consensus 458 DwspDG~rV~sggkd 472 (480)
T KOG0271|consen 458 DWSPDGQRVASGGKD 472 (480)
T ss_pred EecCCCceeecCCCc
Confidence 679999999999776
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.2e-42 Score=318.28 Aligned_cols=282 Identities=19% Similarity=0.240 Sum_probs=251.9
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
...++..+.|+.+++.|++++=+ .++||+..+. ..+..+..|...+.++.|+|.. ++..|++|+.||.|++|++++
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~-~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVD-SDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCC-CccceeeeccCCceeeeccCC
Confidence 35667789999999999998765 9999999985 4899999999999999999984 256899999999999999987
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
. ..+. +...|..+|..++|+|+|+ +|++++.|.+-++||+++.
T Consensus 251 e-----~~l~-------~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk------------------------ 293 (459)
T KOG0272|consen 251 E-----TPLQ-------DLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETK------------------------ 293 (459)
T ss_pred C-----cchh-------hhhcchhhheeeeecCCCc-eeeecccccchhhcccccc------------------------
Confidence 2 1111 1224899999999999999 9999999999999999972
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEE
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQV 367 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~v 367 (548)
..+....+|...|.+++|.|||.++++|+.|..-||||+++++++..+.+|...|..++|+|+|..||+|+.|++++|
T Consensus 294 --~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kV 371 (459)
T KOG0272|consen 294 --SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKV 371 (459)
T ss_pred --hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEE
Confidence 345556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecC
Q 008939 368 WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFST 447 (548)
Q Consensus 368 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 447 (548)
||++..+++..+.+|.+-|+.|+|.| +++ ++|+|++.|++++||.-++..++
T Consensus 372 WDLR~r~~ly~ipAH~nlVS~Vk~~p-------~~g-----~fL~TasyD~t~kiWs~~~~~~~---------------- 423 (459)
T KOG0272|consen 372 WDLRMRSELYTIPAHSNLVSQVKYSP-------QEG-----YFLVTASYDNTVKIWSTRTWSPL---------------- 423 (459)
T ss_pred eeecccccceecccccchhhheEecc-------cCC-----eEEEEcccCcceeeecCCCcccc----------------
Confidence 99999999999999999999999998 432 89999999999999998776554
Q ss_pred CCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 448 GSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 448 ~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
..+.||++.|.+++.++|+ |+|++.|.+||+|.
T Consensus 424 -------------------------------ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 424 -------------------------------KSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -------------------------------hhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 4556799999999999985 99999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.9e-40 Score=305.03 Aligned_cols=269 Identities=22% Similarity=0.358 Sum_probs=239.1
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCC-CcEEEEEeC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG-DGAFVVGHA 251 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~-~~~l~s~~~ 251 (548)
..++..+.|+.+ +..|++|+.+|.+++|+..+ . .....+. .|...|.++.|+|.. ...|++|+.
T Consensus 175 ~rPis~~~fS~d---s~~laT~swsG~~kvW~~~~-----~-~~~~~l~------gH~~~v~~~~fhP~~~~~~lat~s~ 239 (459)
T KOG0272|consen 175 TRPISGCSFSRD---SKHLATGSWSGLVKVWSVPQ-----C-NLLQTLR------GHTSRVGAAVFHPVDSDLNLATASA 239 (459)
T ss_pred CCcceeeEeecC---CCeEEEeecCCceeEeecCC-----c-ceeEEEe------ccccceeeEEEccCCCccceeeecc
Confidence 346777888888 78999999999999999876 2 2222222 599999999999983 448999999
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~ 331 (548)
||++++|+++. ..++..+.+|...|..++|+|+|++|++++.|.+-++||++++
T Consensus 240 Dgtvklw~~~~--------------------------e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk 293 (459)
T KOG0272|consen 240 DGTVKLWKLSQ--------------------------ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK 293 (459)
T ss_pred CCceeeeccCC--------------------------CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc
Confidence 99999999986 3678888999999999999999999999999999999999999
Q ss_pred eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE
Q 008939 332 QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 332 ~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
+.+....+|...|.+|+|.|||.++++|+.|..-+|||+++++++..|.+|...|..|+|+| +| +.|
T Consensus 294 ~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-------NG------y~l 360 (459)
T KOG0272|consen 294 SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-------NG------YHL 360 (459)
T ss_pred hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECC-------Cc------eEE
Confidence 99888999999999999999999999999999999999999999999999999999999999 99 999
Q ss_pred EEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEE
Q 008939 412 GSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGL 491 (548)
Q Consensus 412 ~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l 491 (548)
+||+.|++++|||++...++.. +.+|.+-|+.|
T Consensus 361 ATgs~Dnt~kVWDLR~r~~ly~-----------------------------------------------ipAH~nlVS~V 393 (459)
T KOG0272|consen 361 ATGSSDNTCKVWDLRMRSELYT-----------------------------------------------IPAHSNLVSQV 393 (459)
T ss_pred eecCCCCcEEEeeeccccccee-----------------------------------------------cccccchhhhe
Confidence 9999999999999998765433 34699999999
Q ss_pred EEeCC---eEEEEECCCeEEEEeCCCCC--ccccCCCCcEE--EecCCCCceEeeecc
Q 008939 492 IFTQE---SVLTVCREGHIKIWMRPGVA--ESQSSSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 492 ~fspd---~l~t~s~Dg~I~iW~~~~~~--~~~~~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
.|+|+ +|+|++.|++++||.-++-. ....+|...|+ .+++|+++|+++...
T Consensus 394 k~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 394 KYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD 451 (459)
T ss_pred EecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccC
Confidence 99994 49999999999999977755 45568999998 789999999998655
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-37 Score=305.66 Aligned_cols=370 Identities=19% Similarity=0.251 Sum_probs=307.5
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
...+|-..++++.|+.|.+++++++.| .++||+++..+.-....+..|.+.|...-|..+ ...|++-+.||.|.+|
T Consensus 140 ~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~---~~~l~tvskdG~l~~W 216 (893)
T KOG0291|consen 140 TYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN---SLDLYTVSKDGALFVW 216 (893)
T ss_pred eecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccC---cceEEEEecCceEEEE
Confidence 456788999999999999999999999 999999998554346677778999999899888 6679999999999999
Q ss_pred Eeeeccccc------------------ccc-e---e---eeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEE
Q 008939 204 SLRQQLQDV------------------GKK-L---V---GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVY 258 (548)
Q Consensus 204 dl~~~~~~~------------------~~~-~---~---~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vw 258 (548)
.......+. ++. . . ....|..+ ....|++.+|++... +|++|-..|...+|
T Consensus 217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~---~~~kvtaa~fH~~t~-~lvvgFssG~f~Ly 292 (893)
T KOG0291|consen 217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQ---NSSKVTAAAFHKGTN-LLVVGFSSGEFGLY 292 (893)
T ss_pred EecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecc---cccceeeeeccCCce-EEEEEecCCeeEEE
Confidence 887210000 011 0 0 00111111 237899999999888 99999999999999
Q ss_pred EcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-CeEEEEeCCCCeEEEee
Q 008939 259 EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-GYLRVFDYSKEQLICGG 337 (548)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-g~v~vwd~~~~~~~~~~ 337 (548)
++.. .+.++.+...+.+|..++|+..|.+||.++.. |.+-||+..+...+...
T Consensus 293 elP~--------------------------f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ 346 (893)
T KOG0291|consen 293 ELPD--------------------------FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ 346 (893)
T ss_pred ecCC--------------------------ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec
Confidence 9875 46788888888999999999999999998754 89999999999999999
Q ss_pred eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 338 KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 338 ~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
++|...+.+++++|||+++|+|++|+.|+|||...+-|..+|..|++.|+.+.|+. .| +.+++.+.|
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-------~g------~~llssSLD 413 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-------RG------NVLLSSSLD 413 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-------cC------CEEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999998 88 799999999
Q ss_pred CeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccC-CCCceeecCCCCceEEeecCCCCeeEEEEeCC
Q 008939 418 TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQ-PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE 496 (548)
Q Consensus 418 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd 496 (548)
|+|+.||+...+.-+++..+.+....+.+.+-. ...+..|..+ ..+.+|++++++.+..+.||++||.++.|+|+
T Consensus 414 GtVRAwDlkRYrNfRTft~P~p~QfscvavD~s----GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS----GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred CeEEeeeecccceeeeecCCCceeeeEEEEcCC----CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 999999999999999988766665555443310 1344555555 47899999999999999999999999999997
Q ss_pred e--EEEEECCCeEEEEeCCCC--CccccCCCCcEE--EecCCCCceEeeecccc
Q 008939 497 S--VLTVCREGHIKIWMRPGV--AESQSSSSETVL--STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 497 ~--l~t~s~Dg~I~iW~~~~~--~~~~~~~~~~v~--~~s~d~~~l~s~~~~g~ 544 (548)
+ |++++.|.+||+|++-.. ..+.......++ ++.|||+.||+++..|.
T Consensus 490 ~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgq 543 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQ 543 (893)
T ss_pred cCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecce
Confidence 4 999999999999997655 444555555555 78899999999998854
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.9e-37 Score=273.59 Aligned_cols=289 Identities=15% Similarity=0.185 Sum_probs=255.1
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
-...+|.+.|.++.|++|.++|++++.| .+.|||.-+.. .++.+.....-|...+|+|. ++.++.|+-|+...|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn--K~haipl~s~WVMtCA~sPS---g~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN--KVHAIPLPSSWVMTCAYSPS---GNFVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc--ceeEEecCceeEEEEEECCC---CCeEEecCcCceeEE
Confidence 4567899999999999999999999988 99999998854 88888888889999999999 889999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|++.....+...+ ..+....|.+.+.|+.|.+|+ .|++++.|.++.+||+++.
T Consensus 124 y~ls~~d~~g~~~------v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g------------------- 176 (343)
T KOG0286|consen 124 YPLSTRDAEGNVR------VSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETG------------------- 176 (343)
T ss_pred Eecccccccccce------eeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccc-------------------
Confidence 9998622121112 222334699999999999976 5999999999999999973
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~ 361 (548)
..+..|.+|.+.|.+++++| +++.+++|+.|+..++||++.+.+++.+.+|...|+++.|.|+|.-+++|++
T Consensus 177 -------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD 249 (343)
T KOG0286|consen 177 -------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD 249 (343)
T ss_pred -------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC
Confidence 45788999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCceeEEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC
Q 008939 362 DDLVQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL 439 (548)
Q Consensus 362 dg~I~vwd~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~ 439 (548)
|++.++||++..+.+..+.. -...|++++|+- .| ++|.+|..|..+.+||.-.++.+.
T Consensus 250 D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-------SG------RlLfagy~d~~c~vWDtlk~e~vg------- 309 (343)
T KOG0286|consen 250 DATCRLYDLRADQELAVYSHDSIICGITSVAFSK-------SG------RLLFAGYDDFTCNVWDTLKGERVG------- 309 (343)
T ss_pred CceeEEEeecCCcEEeeeccCcccCCceeEEEcc-------cc------cEEEeeecCCceeEeeccccceEE-------
Confidence 99999999999988888872 246899999998 88 899999999999999987766543
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
.+.+|..+|++|..+||+ ++||+.|.+||||.
T Consensus 310 ----------------------------------------~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 310 ----------------------------------------VLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ----------------------------------------EeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 345799999999999996 89999999999994
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-35 Score=262.01 Aligned_cols=292 Identities=16% Similarity=0.203 Sum_probs=246.0
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
....+.+|++.|+.++..+.. ...|+.++.|..|.+|++.......+.... ...+|...|..+..+++++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~--~~~l~sasrDk~ii~W~L~~dd~~~G~~~r-------~~~GHsH~v~dv~~s~dg~- 76 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKN--SDILVSASRDKTIIVWKLTSDDIKYGVPVR-------RLTGHSHFVSDVVLSSDGN- 76 (315)
T ss_pred eeeeecCCCceEEEEEeecCC--CceEEEcccceEEEEEEeccCccccCceee-------eeeccceEecceEEccCCc-
Confidence 445678899999999998883 458999999999999999874333333222 2235899999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
++++++.|+.+++||+.. ..+.+.|.+|...|.+++|++|.+.+++|+.|.+|+
T Consensus 77 ~alS~swD~~lrlWDl~~--------------------------g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLAT--------------------------GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIK 130 (315)
T ss_pred eEEeccccceEEEEEecC--------------------------CcEEEEEEecCCceEEEEecCCCceeecCCCcceee
Confidence 999999999999999987 356788999999999999999999999999999999
Q ss_pred EEeCCCCeEEEeeeec--CCceEEEEEccC--CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCC
Q 008939 325 VFDYSKEQLICGGKSY--YGALLCCAWSMD--GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~--~~~v~~l~~spd--g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~ 400 (548)
+||...+ +..++..+ .+.|.|+.|+|+ ..+|++++.|++|++||+++.+....+.+|.+.|+.++++|
T Consensus 131 lwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp------- 202 (315)
T KOG0279|consen 131 LWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP------- 202 (315)
T ss_pred eeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-------
Confidence 9999744 44444433 789999999998 67999999999999999999999999999999999999999
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEE
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA 480 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~ 480 (548)
|| .++++|+.||.+.+||++.++.+..+.....+.+++|+|.. ..........+++||+.....+..
T Consensus 203 DG------slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr-------ywL~~at~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 203 DG------SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR-------YWLCAATATSIKIWDLESKAVVEE 269 (315)
T ss_pred CC------CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCc-------eeEeeccCCceEEEeccchhhhhh
Confidence 99 89999999999999999999999999998899999999885 222333455688888887777666
Q ss_pred eecC---------CCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 481 HRVH---------TEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 481 ~~~h---------~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
+... .-...+++|++|+ |+.+-.|+.|++|.+.
T Consensus 270 l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 270 LKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 6532 2234678899986 9999999999999874
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1e-36 Score=283.37 Aligned_cols=285 Identities=13% Similarity=0.229 Sum_probs=243.2
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
..+|..+.|.|+|+.|++++.. .+.+|+...-. --..++.|.+.|.++.|+++ +..+++|..+|.|++|+....
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--FEtilQaHDs~Vr~m~ws~~---g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--FETILQAHDSPVRTMKWSHN---GTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee--HHHHhhhhcccceeEEEccC---CCEEEEcCCCceEEecccchh
Confidence 5678899999999999998877 99999986532 22234458899999999999 889999999999999997752
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
. .+ .. . ..|...|++++|+|++. .|++++.||+|+|||....
T Consensus 171 n---Vk-~~--~------ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~------------------------- 212 (464)
T KOG0284|consen 171 N---VK-II--Q------AHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMP------------------------- 212 (464)
T ss_pred h---hH-Hh--h------HhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCC-------------------------
Confidence 1 11 11 1 12568999999999888 9999999999999998862
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 368 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vw 368 (548)
++-..+.+|.-.|.+++|+|...+|++++.|..|++||.++++++.++..|...|..+.|+|++++|++++.|..++++
T Consensus 213 -kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~ 291 (464)
T KOG0284|consen 213 -KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVF 291 (464)
T ss_pred -chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEE
Confidence 3345568888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCC
Q 008939 369 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTG 448 (548)
Q Consensus 369 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 448 (548)
|+++.+.+..+++|+..|+++.|+|. .. .+|.+++.||.|..|.+...+.+..+.
T Consensus 292 DiR~mkEl~~~r~Hkkdv~~~~WhP~------~~------~lftsgg~Dgsvvh~~v~~~~p~~~i~------------- 346 (464)
T KOG0284|consen 292 DIRTMKELFTYRGHKKDVTSLTWHPL------NE------SLFTSGGSDGSVVHWVVGLEEPLGEIP------------- 346 (464)
T ss_pred ehhHhHHHHHhhcchhhheeeccccc------cc------cceeeccCCCceEEEeccccccccCCC-------------
Confidence 99999999999999999999999993 22 589999999999999988444433322
Q ss_pred CCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCC
Q 008939 449 SQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 449 ~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~ 516 (548)
.+|...|++|+|+|= .|++|+.|.++|+|......
T Consensus 347 ---------------------------------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 347 ---------------------------------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred ---------------------------------cccccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence 268999999999995 48999999999999965443
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.1e-35 Score=276.10 Aligned_cols=319 Identities=16% Similarity=0.231 Sum_probs=257.9
Q ss_pred CCCCCceeEEeCCCCC-EEEEecCC-eEEEEEccCCCCCCeE------------EEecCCCCceEEEecCCCCCCceEEE
Q 008939 128 SSSTSMTNTNFDGKGT-YIIFNVGD-AIFISDLNSQDKDPIK------------SIHFSNSNPVCHAFDQDAKDGHDLLI 193 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~-~l~~~~~d-~v~vwd~~~~~~~~i~------------~~~~~~~~~~~~~~~p~~~~~~~l~~ 193 (548)
.|..+|++++|+|-.. +++++.++ ..++|++......... .-.+....+++++|+.+ |.+|++
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~---G~~Lat 252 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND---GTLLAT 252 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC---CCeEEE
Confidence 4999999999999877 78888888 9999998852211111 11123458999999998 889999
Q ss_pred EEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 194 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 194 g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
|+.+|.+++|+.... .+.... .|+++|.+++|+..|. +|++++.|+++.+||..++
T Consensus 253 G~~~G~~riw~~~G~------l~~tl~-------~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g---------- 308 (524)
T KOG0273|consen 253 GSEDGEARIWNKDGN------LISTLG-------QHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTG---------- 308 (524)
T ss_pred eecCcEEEEEecCch------hhhhhh-------ccCCceEEEEEcCCCC-EEEeccCCccEEEEeccCc----------
Confidence 999999999998752 221111 2899999999999999 9999999999999998762
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG 353 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg 353 (548)
...+.+..|..+-..+.|-.+ ..+++++.|+.|+|+.+....++.++.+|.+.|.++.|.|.|
T Consensus 309 ----------------~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg 371 (524)
T KOG0273|consen 309 ----------------TVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG 371 (524)
T ss_pred ----------------eEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC
Confidence 234455556666567888654 468999999999999999889999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCC---CCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYW---SQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 354 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~---~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
.+|++++.|++++||++........+++|...|..+.|+|.- +.|+ ++ ..+++++.|+.|++||+..+.+
T Consensus 372 ~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~-~~------~~l~sas~dstV~lwdv~~gv~ 444 (524)
T KOG0273|consen 372 SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPN-MN------LMLASASFDSTVKLWDVESGVP 444 (524)
T ss_pred ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCc-CC------ceEEEeecCCeEEEEEccCCce
Confidence 999999999999999999999999999999999999999931 1111 12 5899999999999999998876
Q ss_pred EeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEE
Q 008939 431 VVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIK 508 (548)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~ 508 (548)
+.. |..|+++|++|+|+|+ ++++|+.||.|.
T Consensus 445 i~~-----------------------------------------------f~kH~~pVysvafS~~g~ylAsGs~dg~V~ 477 (524)
T KOG0273|consen 445 IHT-----------------------------------------------LMKHQEPVYSVAFSPNGRYLASGSLDGCVH 477 (524)
T ss_pred eEe-----------------------------------------------eccCCCceEEEEecCCCcEEEecCCCCeeE
Confidence 654 4459999999999998 499999999999
Q ss_pred EEeCCCCCccccC-CCCcEE--EecCCCCceEeeecccc
Q 008939 509 IWMRPGVAESQSS-SSETVL--STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 509 iW~~~~~~~~~~~-~~~~v~--~~s~d~~~l~s~~~~g~ 544 (548)
||+.+.++.-... ....|. .|+.+|..|+.+-..|+
T Consensus 478 iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 478 IWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred eccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCC
Confidence 9999988754443 333344 78888888776655444
No 11
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.2e-34 Score=263.47 Aligned_cols=330 Identities=13% Similarity=0.136 Sum_probs=283.2
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
-+.|..|..++++++.+|+.++++++++| .-+||++.++. .+..+..|++.|+|+.|+.+ +.+|++|..+|.|.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~Fshd---gtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSHD---GTLLATGDMSGKVL 131 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--ceeEecCCCCceEEEEEccC---ceEEEecCCCccEE
Confidence 45788999999999999999999998887 88999999976 88899999999999999999 88999999999999
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
||+..+. .....+. .....+.-+.|+|.+. +|++|+.||.+.+|.+.+.
T Consensus 132 v~~~stg------~~~~~~~------~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~------------------ 180 (399)
T KOG0296|consen 132 VFKVSTG------GEQWKLD------QEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ------------------ 180 (399)
T ss_pred EEEcccC------ceEEEee------cccCceEEEEeccccc-EEEeecCCCcEEEEECCCc------------------
Confidence 9998862 1111111 1356778899999888 9999999999999999862
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeec-CCceEEEEEccCCCEEEEEe
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY-YGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~sgs 360 (548)
...+.+.+|+.++++=.|.|+|+.++++..||+|++||+.++++++.+... .....++.++..+..++.|+
T Consensus 181 --------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~ 252 (399)
T KOG0296|consen 181 --------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN 252 (399)
T ss_pred --------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence 456788899999999999999999999999999999999999998877633 34678899999999999999
Q ss_pred CCCeEEEEECCCceeEEecc--------CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEe
Q 008939 361 EDDLVQVWSMEDRKVVAWGE--------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV 432 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~--------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~ 432 (548)
.++.+++.+..+++.+.... .++..+.+|.|.| -. ....++++|+.||+|.|||+.....+.
T Consensus 253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~-------~s---s~lpL~A~G~vdG~i~iyD~a~~~~R~ 322 (399)
T KOG0296|consen 253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP-------SS---SKLPLAACGSVDGTIAIYDLAASTLRH 322 (399)
T ss_pred CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc-------cc---cccchhhcccccceEEEEecccchhhe
Confidence 99999999999998887766 4677788888877 22 122578999999999999999998888
Q ss_pred eeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEE
Q 008939 433 PLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIW 510 (548)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW 510 (548)
..+++..+..+.|.. +.++.++..++.++.||.++++.+..+.+|..+|.+++.+|+ .++|+|.|++.+|+
T Consensus 323 ~c~he~~V~~l~w~~-------t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 323 ICEHEDGVTKLKWLN-------TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred eccCCCceEEEEEcC-------cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence 888876666666543 245678889999999999999999999999999999999997 59999999999999
Q ss_pred eCC
Q 008939 511 MRP 513 (548)
Q Consensus 511 ~~~ 513 (548)
+.+
T Consensus 396 ~v~ 398 (399)
T KOG0296|consen 396 EVP 398 (399)
T ss_pred ecC
Confidence 876
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-35 Score=267.23 Aligned_cols=287 Identities=21% Similarity=0.305 Sum_probs=256.5
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
.....+|..+|+.+-|.|+-.++++++.| +|++||+.+++ ....++.|.+.+..++|+.. |.+|++++.|=.+.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~--~e~~LrGHt~sv~di~~~a~---Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE--LERSLRGHTDSVFDISFDAS---GKYLATCSSDLSAK 175 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchh--hhhhhhccccceeEEEEecC---ccEEEecCCccchh
Confidence 45666799999999999999999999888 99999999966 78899999999999999988 78999999999999
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
+||..+.. +..+.. ..|...|.+++|-|.+. .+++++.|.+|+.|++.++
T Consensus 176 LWd~~~~~-~c~ks~----------~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg------------------ 225 (406)
T KOG0295|consen 176 LWDFDTFF-RCIKSL----------IGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTG------------------ 225 (406)
T ss_pred heeHHHHH-HHHHHh----------cCcccceeeEEEEecCC-eeeecccccceeEEecccc------------------
Confidence 99988631 111111 13788999999999998 9999999999999999972
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC---------
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD--------- 352 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd--------- 352 (548)
-.+..+.+|...|.-++.+.||.++++++.|.+|++|-+.++++...++.|.-+|.|++|-|.
T Consensus 226 --------~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 226 --------YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred --------eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence 457778888899999999999999999999999999999999998899999999999999873
Q ss_pred ------CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 353 ------GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 353 ------g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
++++.+++.|++|++||+.++.++.++.+|..+|..++|+| .| ++|+++..|++|++||++
T Consensus 298 t~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-------~G------kyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-------GG------KYILSCADDKTLRVWDLK 364 (406)
T ss_pred cCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-------CC------eEEEEEecCCcEEEEEec
Confidence 35899999999999999999999999999999999999999 89 899999999999999999
Q ss_pred CCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECC
Q 008939 427 MDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCRE 504 (548)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~D 504 (548)
+.+|+..++ .|..-|++++|+.+ +++||+-|
T Consensus 365 ~~~cmk~~~-----------------------------------------------ah~hfvt~lDfh~~~p~VvTGsVd 397 (406)
T KOG0295|consen 365 NLQCMKTLE-----------------------------------------------AHEHFVTSLDFHKTAPYVVTGSVD 397 (406)
T ss_pred cceeeeccC-----------------------------------------------CCcceeEEEecCCCCceEEecccc
Confidence 999886554 37888999999886 69999999
Q ss_pred CeEEEEeC
Q 008939 505 GHIKIWMR 512 (548)
Q Consensus 505 g~I~iW~~ 512 (548)
.++++|..
T Consensus 398 qt~KvwEc 405 (406)
T KOG0295|consen 398 QTVKVWEC 405 (406)
T ss_pred ceeeeeec
Confidence 99999974
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-33 Score=268.59 Aligned_cols=367 Identities=14% Similarity=0.176 Sum_probs=276.0
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC----
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---- 197 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---- 197 (548)
......|..+++.+.|+|.|.+++++-.. +|||||......-.-..++.-...+..++|+.+ +.+|++.+..
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~d---s~RI~avGEGrerf 128 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFD---SKRIAAVGEGRERF 128 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCC---CcEEEEEecCccce
Confidence 34566789999999999999999887655 999999876331222333334568999999999 5566666544
Q ss_pred CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
|.+.+||-.+.. + +..+|...|++++|-|..+..+++|++|+.|.+|+=.-
T Consensus 129 g~~F~~DSG~Sv---G-----------ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP--------------- 179 (603)
T KOG0318|consen 129 GHVFLWDSGNSV---G-----------EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP--------------- 179 (603)
T ss_pred eEEEEecCCCcc---c-----------eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC---------------
Confidence 458888866521 1 11258999999999999998999999999999997321
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee---ecCCceEEEEEccCCC
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK---SYYGALLCCAWSMDGK 354 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~---~~~~~v~~l~~spdg~ 354 (548)
.+.-..++.|..-|+|+.|+|||.++++++.||.+.+||=.+++.+..+. +|.+.|.+++|+||++
T Consensus 180 -----------FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~ 248 (603)
T KOG0318|consen 180 -----------FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST 248 (603)
T ss_pred -----------eeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc
Confidence 12223456678899999999999999999999999999999999998887 8999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCceeEEec-------------------------------------------cCCCCCeEEEEE
Q 008939 355 YILTGGEDDLVQVWSMEDRKVVAWG-------------------------------------------EGHNSWVSGVAF 391 (548)
Q Consensus 355 ~l~sgs~dg~I~vwd~~~~~~~~~~-------------------------------------------~~h~~~V~~v~~ 391 (548)
.+++++.|.+++|||+.+.+++.++ .||...|+++..
T Consensus 249 ~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv 328 (603)
T KOG0318|consen 249 QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTV 328 (603)
T ss_pred eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEE
Confidence 9999999999999999876544433 589999999999
Q ss_pred ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee-----------ecC-----------------------
Q 008939 392 DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL-----------RRG----------------------- 437 (548)
Q Consensus 392 ~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~-----------~~~----------------------- 437 (548)
+| |+ .+|.+++.||.|.-||..++..-+.. ...
T Consensus 329 ~~-------d~------~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 329 SP-------DG------KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred cC-------CC------CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCc
Confidence 99 88 79999999999999998766542111 000
Q ss_pred ----------CCCCCceecCCCC-------------------------------ccc-cCCeeeecccCCCCceeecCCC
Q 008939 438 ----------PLGGSPTFSTGSQ-------------------------------SAH-WDNVCPVGTLQPAPSMRDVPKL 475 (548)
Q Consensus 438 ----------~~~~~~~~~~~~~-------------------------------~~~-~d~~~~~g~~~~~~~~~d~~~~ 475 (548)
.+...++...++. ... -...+.+|..|..++++.+...
T Consensus 396 ~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~ 475 (603)
T KOG0318|consen 396 YTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGD 475 (603)
T ss_pred ccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCC
Confidence 0000111111110 001 1233467777888888887654
Q ss_pred C--ceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcccc---CCCCcEE--EecCCCCceEeeeccccc
Q 008939 476 S--PLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQS---SSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 476 ~--~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~~---~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
. +...+..|..+|++|+|+||+ |+++...+.+.+||+...+.... -|...|. +++|+.+++|+|...-++
T Consensus 476 ~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 476 ELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred cccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence 3 444566799999999999984 88888889999999887765322 2666666 888999999999776443
No 14
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.7e-34 Score=282.57 Aligned_cols=382 Identities=18% Similarity=0.190 Sum_probs=298.6
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
.|..++..++|+|.|..+++++.| .++|||+..+. .++.++.+++-+..+.|.|+.. ...|++|..|+.|++||++
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~--~th~fkG~gGvVssl~F~~~~~-~~lL~sg~~D~~v~vwnl~ 179 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY--CTHSFKGHGGVVSSLLFHPHWN-RWLLASGATDGTVRVWNLN 179 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE--EEEEecCCCceEEEEEeCCccc-hhheeecCCCceEEEEEcc
Confidence 489999999999999999998877 99999999865 9999999999999999999854 3678999999999999998
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc---------
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT--------- 277 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~--------- 277 (548)
.. +.+.... ..|.+.|++++|.+++. .+++++.|..+.|||+.+ .+.....+.....+
T Consensus 180 ~~-----~tcl~~~------~~H~S~vtsL~~~~d~~-~~ls~~RDkvi~vwd~~~-~~~l~~lp~ye~~E~vv~l~~~~ 246 (775)
T KOG0319|consen 180 DK-----RTCLHTM------ILHKSAVTSLAFSEDSL-ELLSVGRDKVIIVWDLVQ-YKKLKTLPLYESLESVVRLREEL 246 (775)
T ss_pred cC-----chHHHHH------HhhhhheeeeeeccCCc-eEEEeccCcEEEEeehhh-hhhhheechhhheeeEEEechhc
Confidence 62 2211111 13899999999999988 899999999999999954 22222222111000
Q ss_pred -----eeeeecC---------C----------C-------------------------------CCCCCeeEeeecCCCe
Q 008939 278 -----QFSVAHP---------R----------Y-------------------------------SKSNPIARWHICQGSI 302 (548)
Q Consensus 278 -----~~~~~~~---------~----------~-------------------------------~~~~~~~~~~~h~~~v 302 (548)
.+..... . . ....++..+-+..+.|
T Consensus 247 ~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI 326 (775)
T KOG0319|consen 247 GGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEI 326 (775)
T ss_pred CCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhh
Confidence 0000000 0 0 0011111222345788
Q ss_pred EEEEEC-CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce----eEE
Q 008939 303 NSIAFS-TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK----VVA 377 (548)
Q Consensus 303 ~~~~~s-p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~----~~~ 377 (548)
.+|+|- |+.++|+++++.+.+|+|++.+..+. .+.+|...|.+++...+|-+|++|+.|..+++|.++++. +++
T Consensus 327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a 405 (775)
T KOG0319|consen 327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA 405 (775)
T ss_pred eeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence 889875 57789999999999999999887766 789999999999976788899999999999999885542 556
Q ss_pred eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEe----------eeecCCCCCCceecC
Q 008939 378 WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV----------PLRRGPLGGSPTFST 447 (548)
Q Consensus 378 ~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~----------~~~~~~~~~~~~~~~ 447 (548)
...+|...|.+|+++. .+. ..|++++.|++|++|++...+... ...++..++++.+++
T Consensus 406 ~~~gH~~svgava~~~-------~~a-----sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ 473 (775)
T KOG0319|consen 406 QANGHTNSVGAVAGSK-------LGA-----SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP 473 (775)
T ss_pred hhcccccccceeeecc-------cCc-----cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence 6779999999999975 442 589999999999999998722111 111335677777776
Q ss_pred CCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCc--cccCCC
Q 008939 448 GSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--SQSSSS 523 (548)
Q Consensus 448 ~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~--~~~~~~ 523 (548)
+ |..+++|+.|...++|+++....+.++.+|...|.+|.|+|. .++|+|.|++|+||.+.+... ...+|.
T Consensus 474 n------dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~ 547 (775)
T KOG0319|consen 474 N------DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHT 547 (775)
T ss_pred C------CceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcc
Confidence 6 578899999999999999999999999999999999999995 699999999999999998774 344788
Q ss_pred CcEE--EecCCCCceEeeecccc
Q 008939 524 ETVL--STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 524 ~~v~--~~s~d~~~l~s~~~~g~ 544 (548)
..|+ +|-.+|+.|+|+...|-
T Consensus 548 ~aVlra~F~~~~~qliS~~adGl 570 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGL 570 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCc
Confidence 9998 77799999999987764
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1e-33 Score=247.39 Aligned_cols=252 Identities=23% Similarity=0.371 Sum_probs=218.1
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecc
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQL 209 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~ 209 (548)
...|..+...|+++.|++++...||+||+++....|+.++..+..+|+.+.|..+ |+.+++|+.||.++|||++..
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d---grWMyTgseDgt~kIWdlR~~- 115 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD---GRWMYTGSEDGTVKIWDLRSL- 115 (311)
T ss_pred ccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeec---CeEEEecCCCceEEEEeccCc-
Confidence 5678899999999999999999999999999887799999999999999999998 899999999999999999972
Q ss_pred cccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 210 QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
.-.+.. -+..+|+++..+|+.. .|++|..+|.|++||+..+.......+.
T Consensus 116 -~~qR~~-----------~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe----------------- 165 (311)
T KOG0315|consen 116 -SCQRNY-----------QHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIPE----------------- 165 (311)
T ss_pred -ccchhc-----------cCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCCC-----------------
Confidence 111111 1679999999999988 8999999999999999864222211111
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC------eEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE------QLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~------~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
...+|.++...|||++|+.+...|.+.+|++-.. +++..++.|.+.++.+.+|||+++||+++.|.
T Consensus 166 --------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk 237 (311)
T KOG0315|consen 166 --------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK 237 (311)
T ss_pred --------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc
Confidence 1267899999999999999999999999999654 35667889999999999999999999999999
Q ss_pred eEEEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 364 LVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 364 ~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
+++||+.++. +....+++|..+|+..+|+. || .+|++++.|+.+++||+..++.++....
T Consensus 238 tv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-------dg------~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 238 TVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-------DG------EYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred eEEEEecCCceeeEEEeecCCceEEeeeecc-------Cc------cEEEecCCCCceeecccccCceeeecCC
Confidence 9999999987 66677889999999999999 99 8999999999999999999987766544
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.5e-34 Score=290.27 Aligned_cols=254 Identities=20% Similarity=0.286 Sum_probs=226.9
Q ss_pred cccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCC-----------------------------CCCeEEEec
Q 008939 122 GSLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQD-----------------------------KDPIKSIHF 171 (548)
Q Consensus 122 ~~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~-----------------------------~~~i~~~~~ 171 (548)
--..+.+....++|+.|++|+..+|.+..| .|++|.+.... ......+..
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 356777778899999999999999999988 99999987311 112345677
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
|...|..+.|+|+ .++|++++.|+.|++|++++. .-++. ..+|..+|+++.|+|.|- +||+++.
T Consensus 450 H~GPVyg~sFsPd---~rfLlScSED~svRLWsl~t~-----s~~V~-------y~GH~~PVwdV~F~P~Gy-YFatas~ 513 (707)
T KOG0263|consen 450 HSGPVYGCSFSPD---RRFLLSCSEDSSVRLWSLDTW-----SCLVI-------YKGHLAPVWDVQFAPRGY-YFATASH 513 (707)
T ss_pred CCCceeeeeeccc---ccceeeccCCcceeeeecccc-----eeEEE-------ecCCCcceeeEEecCCce-EEEecCC
Confidence 8899999999999 889999999999999999872 11221 125899999999999998 9999999
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~ 331 (548)
|++.++|..+. ..|.+.+.+|...|.|+.|+|+..|+++|+.|.+||+||+.+|
T Consensus 514 D~tArLWs~d~--------------------------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G 567 (707)
T KOG0263|consen 514 DQTARLWSTDH--------------------------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG 567 (707)
T ss_pred Cceeeeeeccc--------------------------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC
Confidence 99999999876 4678889999999999999999999999999999999999999
Q ss_pred eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE
Q 008939 332 QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 332 ~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
..+..+.+|.++|.+++|||+|++|++|++|+.|.+||+.+++.+..+.+|.+.|.+|.|+. || ..|
T Consensus 568 ~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-------dg------~vL 634 (707)
T KOG0263|consen 568 NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-------DG------NVL 634 (707)
T ss_pred cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-------CC------CEE
Confidence 99999999999999999999999999999999999999999999999999999999999999 99 799
Q ss_pred EEEeCCCeEEEEECCCCeE
Q 008939 412 GSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 412 ~s~~~Dg~i~lwd~~~~~~ 430 (548)
++++.|.+|++||+.....
T Consensus 635 asgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 635 ASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EecCCCCeEEEEEchhhcc
Confidence 9999999999999876543
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=251.50 Aligned_cols=283 Identities=16% Similarity=0.198 Sum_probs=240.7
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
..+.++.|...|.++.|+++ .++|++++.||.+.|||.-+. .+..... .....|..++|+|.++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~D---sr~ivSaSqDGklIvWDs~Tt-----nK~haip-------l~s~WVMtCA~sPSg~- 110 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTD---SRRIVSASQDGKLIVWDSFTT-----NKVHAIP-------LPSSWVMTCAYSPSGN- 110 (343)
T ss_pred eEEEecccccceeeeEecCC---cCeEEeeccCCeEEEEEcccc-----cceeEEe-------cCceeEEEEEECCCCC-
Confidence 34678889999999999999 778999999999999998762 2222111 2478899999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
++++|+-|+...||++....... .....+.+.+|++-+.|+.|-+|+ .|++++.|.++.
T Consensus 111 ~VAcGGLdN~Csiy~ls~~d~~g--------------------~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCa 169 (343)
T KOG0286|consen 111 FVACGGLDNKCSIYPLSTRDAEG--------------------NVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCA 169 (343)
T ss_pred eEEecCcCceeEEEecccccccc--------------------cceeeeeecCccceeEEEEEcCCC-ceEecCCCceEE
Confidence 99999999999999998521100 013345678899999999998864 689999999999
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCC
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGT 403 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~ 403 (548)
+||+++++.+..+.+|.+.|.+++++| +++.+++|+-|...+|||++.+.+++.|.+|++-|++|.|.| +|
T Consensus 170 lWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-------~G- 241 (343)
T KOG0286|consen 170 LWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-------SG- 241 (343)
T ss_pred EEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-------CC-
Confidence 999999999999999999999999999 999999999999999999999999999999999999999999 99
Q ss_pred ccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 404 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 404 ~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
.-|++|+.|+..++||++.++.+..+.. ..
T Consensus 242 -----~afatGSDD~tcRlyDlRaD~~~a~ys~---------------------------------------------~~ 271 (343)
T KOG0286|consen 242 -----DAFATGSDDATCRLYDLRADQELAVYSH---------------------------------------------DS 271 (343)
T ss_pred -----CeeeecCCCceeEEEeecCCcEEeeecc---------------------------------------------Cc
Confidence 7899999999999999999988876654 11
Q ss_pred CCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC--ccccCCCCcEE--EecCCCCceEeeecc
Q 008939 484 HTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA--ESQSSSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 484 h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~--~~~~~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
-..+|++++|+-.+ |++|..|..+.+||.-.++ ..+.+|+..|. .++|||--|++|...
T Consensus 272 ~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 272 IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchh
Confidence 24679999999964 8888999999999955444 45568888887 778999999998654
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9e-34 Score=268.22 Aligned_cols=278 Identities=17% Similarity=0.299 Sum_probs=246.9
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
....|++++|+.+|..|+++..+ .++||+... ..+.++..|...|..+.|+.. |.+|++++.|+++.+||..+
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk~---G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG---NLISTLGQHKGPIFSLKWNKK---GTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCc---hhhhhhhccCCceEEEEEcCC---CCEEEeccCCccEEEEeccC
Confidence 45789999999999999999988 999999884 478889999999999999998 89999999999999999865
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
. ...+... .|..+-.+|.|..+.. |++++.|+.|+|+.+..
T Consensus 308 g------~~~q~f~------~~s~~~lDVdW~~~~~--F~ts~td~~i~V~kv~~------------------------- 348 (524)
T KOG0273|consen 308 G------TVKQQFE------FHSAPALDVDWQSNDE--FATSSTDGCIHVCKVGE------------------------- 348 (524)
T ss_pred c------eEEEeee------eccCCccceEEecCce--EeecCCCceEEEEEecC-------------------------
Confidence 2 1111111 2566668899988775 99999999999999975
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC---------EEEE
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK---------YILT 358 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~---------~l~s 358 (548)
..|+..+.+|.+.|.++.|+|.+.+|++++.|++++||+.........+++|...|..+.|+|.|. .|++
T Consensus 349 -~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~s 427 (524)
T KOG0273|consen 349 -DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLAS 427 (524)
T ss_pred -CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEE
Confidence 578999999999999999999999999999999999999988888999999999999999999764 6899
Q ss_pred EeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 359 gs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
++.|.+|++||+..+.+++.|..|..+|++|+|+| +| +++++|+.||.|.+|+++++++.+....
T Consensus 428 as~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-------~g------~ylAsGs~dg~V~iws~~~~~l~~s~~~-- 492 (524)
T KOG0273|consen 428 ASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-------NG------RYLASGSLDGCVHIWSTKTGKLVKSYQG-- 492 (524)
T ss_pred eecCCeEEEEEccCCceeEeeccCCCceEEEEecC-------CC------cEEEecCCCCeeEeccccchheeEeecC--
Confidence 99999999999999999999999999999999999 99 8999999999999999999998876654
Q ss_pred CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCC
Q 008939 439 LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 439 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~ 513 (548)
.+.|..|.|+-+ .|..+-.|+.+++-|+.
T Consensus 493 ----------------------------------------------~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 493 ----------------------------------------------TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ----------------------------------------------CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 456899999986 47788899999999874
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.4e-35 Score=291.65 Aligned_cols=255 Identities=18% Similarity=0.298 Sum_probs=220.3
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecc----cc--cccce--------eeeee-----eccCCcccCcc
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQL----QD--VGKKL--------VGAHH-----YNKDGSVNNSR 232 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~----~~--~~~~~--------~~~~~-----~~~~~~~~~~~ 232 (548)
....++|..|+++ +.+|+.|..|-.|++|.+.... ++ ...++ ..... ..+...+|.++
T Consensus 377 t~~~v~ca~fSdd---ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP 453 (707)
T KOG0263|consen 377 TYQGVTCAEFSDD---SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP 453 (707)
T ss_pred cCCcceeEeecCC---cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence 4568899999999 7799999999999999998411 00 00000 00000 00112359999
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC
Q 008939 233 CTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT 312 (548)
Q Consensus 233 v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~ 312 (548)
|+.+.|+|+.+ +|+++++|+++++|.+++ ...+..+++|..+|.++.|+|-|-
T Consensus 454 Vyg~sFsPd~r-fLlScSED~svRLWsl~t--------------------------~s~~V~y~GH~~PVwdV~F~P~Gy 506 (707)
T KOG0263|consen 454 VYGCSFSPDRR-FLLSCSEDSSVRLWSLDT--------------------------WSCLVIYKGHLAPVWDVQFAPRGY 506 (707)
T ss_pred eeeeeeccccc-ceeeccCCcceeeeeccc--------------------------ceeEEEecCCCcceeeEEecCCce
Confidence 99999999999 999999999999999997 345677889999999999999999
Q ss_pred EEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEe
Q 008939 313 YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392 (548)
Q Consensus 313 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~ 392 (548)
|+|+++.|++.++|.....+.+..+.+|.+.|.|+.|+|+..++++|+.|.+|++||+.++..+..|.||.++|.+|+|+
T Consensus 507 YFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~S 586 (707)
T KOG0263|consen 507 YFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFS 586 (707)
T ss_pred EEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeec
Q 008939 393 SYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDV 472 (548)
Q Consensus 393 p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~ 472 (548)
| +| ++|++|+.|+.|++||+..+..+.
T Consensus 587 p-------~G------r~LaSg~ed~~I~iWDl~~~~~v~---------------------------------------- 613 (707)
T KOG0263|consen 587 P-------CG------RYLASGDEDGLIKIWDLANGSLVK---------------------------------------- 613 (707)
T ss_pred C-------CC------ceEeecccCCcEEEEEcCCCcchh----------------------------------------
Confidence 9 99 899999999999999999887654
Q ss_pred CCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 473 PKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 473 ~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
.+.+|++.|.+|.|+.|+ |++++.|.+|++||+....
T Consensus 614 -------~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 614 -------QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred -------hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 345689999999999986 9999999999999976543
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-33 Score=248.09 Aligned_cols=285 Identities=18% Similarity=0.212 Sum_probs=228.4
Q ss_pred ccCCCCCCceeEEeCCCCCE-EEEecCC-eEEEEEccCCCC---CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc
Q 008939 125 GASSSSTSMTNTNFDGKGTY-IIFNVGD-AIFISDLNSQDK---DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD 199 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~-l~~~~~d-~v~vwd~~~~~~---~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~ 199 (548)
...+|...|+.++..+.+.- +..++.| .+.+|++...+. .+++.+..|...+..++.+++ +++.++++.|+.
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d---g~~alS~swD~~ 86 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD---GNFALSASWDGT 86 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC---CceEEeccccce
Confidence 34578999999999887554 4445666 999999986543 468889999999999999999 999999999999
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
+++||+.+ ++...... +|...|.+++|+++.. .+++|+.|.+|++|++-.+..
T Consensus 87 lrlWDl~~-----g~~t~~f~-------GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck-------------- 139 (315)
T KOG0279|consen 87 LRLWDLAT-----GESTRRFV-------GHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCK-------------- 139 (315)
T ss_pred EEEEEecC-----CcEEEEEE-------ecCCceEEEEecCCCc-eeecCCCcceeeeeeecccEE--------------
Confidence 99999987 22222211 4899999999999999 999999999999999864210
Q ss_pred eeecCCCCCCCCeeEee-ecCCCeEEEEECCC--CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEE
Q 008939 280 SVAHPRYSKSNPIARWH-ICQGSINSIAFSTD--GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI 356 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~--g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l 356 (548)
...-. .|.+.|.|+.|+|+ ..+|++++.|++|++||+++.++...+.+|.+.++.+++||||.++
T Consensus 140 ------------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslc 207 (315)
T KOG0279|consen 140 ------------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLC 207 (315)
T ss_pred ------------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEE
Confidence 11111 12478999999997 6799999999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 357 ~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
++|+.||.+.+||++.++.+..+. |...|.+++|+| +. +.| ....+..|+|||+.++.++..+..
T Consensus 208 asGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp-------nr------ywL-~~at~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 208 ASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP-------NR------YWL-CAATATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred ecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecC-------Cc------eeE-eeccCCceEEEeccchhhhhhccc
Confidence 999999999999999999988887 899999999999 65 444 445566799999999999888765
Q ss_pred CCCC----------CCceecCCCCccccCCeeeecccCCCCceeec
Q 008939 437 GPLG----------GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDV 472 (548)
Q Consensus 437 ~~~~----------~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~ 472 (548)
+... .+++++.++ ..+..|..++.+++|.+
T Consensus 273 d~~g~s~~~~~~~clslaws~dG------~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 273 DGIGPSSKAGDPICLSLAWSADG------QTLFAGYTDNVIRVWQV 312 (315)
T ss_pred cccccccccCCcEEEEEEEcCCC------cEEEeeecCCcEEEEEe
Confidence 4222 223444444 34455556666666654
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=257.30 Aligned_cols=291 Identities=14% Similarity=0.159 Sum_probs=254.4
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
.++|.+=|.+++++|.+.++++++.| ++.|||+.++. ...++..|...+..+++++- ..+|++++.|++|+.||
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~--LkltltGhi~~vr~vavS~r---HpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ--LKLTLTGHIETVRGVAVSKR---HPYLFSAGEDKQVKCWD 221 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe--EEEeecchhheeeeeeeccc---CceEEEecCCCeeEEEe
Confidence 45899999999999999999999998 99999999966 77888889999999999998 66899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
|+. .+++ ++..+|-..|+|++.+|.-+ +|++|+.|..++|||+++
T Consensus 222 Le~------nkvI------R~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRt---------------------- 266 (460)
T KOG0285|consen 222 LEY------NKVI------RHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRT---------------------- 266 (460)
T ss_pred chh------hhhH------HHhccccceeEEEeccccce-eEEecCCcceEEEeeecc----------------------
Confidence 987 2332 23346899999999999998 999999999999999997
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
...+..+.+|..+|..+.+.|-...+++|+.|++|++||++.++....+..|...+.+++.+|....+|+++.| .
T Consensus 267 ----r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-n 341 (460)
T KOG0285|consen 267 ----RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-N 341 (460)
T ss_pred ----cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-c
Confidence 46789999999999999999966789999999999999999999999999999999999999999888888876 7
Q ss_pred EEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCce
Q 008939 365 VQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT 444 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 444 (548)
|+-|++..+..++.+.+|+..|.+++... || ++++|+..|.|.+||.+++...+..+.-..
T Consensus 342 ik~w~~p~g~f~~nlsgh~~iintl~~ns-------D~-------v~~~G~dng~~~fwdwksg~nyQ~~~t~vq----- 402 (460)
T KOG0285|consen 342 IKQWKLPEGEFLQNLSGHNAIINTLSVNS-------DG-------VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQ----- 402 (460)
T ss_pred ceeccCCccchhhccccccceeeeeeecc-------Cc-------eEEEcCCceEEEEEecCcCccccccccccc-----
Confidence 99999999999999999999999999987 88 899999999999999999877655433111
Q ss_pred ecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCC
Q 008939 445 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 445 ~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~ 514 (548)
-|++ ..+..|++.+|... .|+||..|.+|++|.-..
T Consensus 403 ---------------pGSl-------------------~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 403 ---------------PGSL-------------------ESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ---------------CCcc-------------------ccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 1111 12567999999886 499999999999998544
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=240.71 Aligned_cols=272 Identities=14% Similarity=0.168 Sum_probs=225.8
Q ss_pred CEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeee
Q 008939 143 TYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHH 221 (548)
Q Consensus 143 ~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~ 221 (548)
-+|++++.| +||+|...++. ...++......+..+...|+ +.+|++++. -.|++||+++..+.+ +.. .
T Consensus 11 viLvsA~YDhTIRfWqa~tG~--C~rTiqh~dsqVNrLeiTpd---k~~LAaa~~-qhvRlyD~~S~np~P---v~t-~- 79 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI--CSRTIQHPDSQVNRLEITPD---KKDLAAAGN-QHVRLYDLNSNNPNP---VAT-F- 79 (311)
T ss_pred eEEEeccCcceeeeeehhcCe--EEEEEecCccceeeEEEcCC---cchhhhccC-CeeEEEEccCCCCCc---eeE-E-
Confidence 467777878 99999999966 99999999999999999999 556776654 589999999842221 211 1
Q ss_pred eccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCC
Q 008939 222 YNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS 301 (548)
Q Consensus 222 ~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 301 (548)
..|...|+.+.|..+|+ .+++|++||+++|||++... .++.-.|..+
T Consensus 80 -----e~h~kNVtaVgF~~dgr-WMyTgseDgt~kIWdlR~~~---------------------------~qR~~~~~sp 126 (311)
T KOG0315|consen 80 -----EGHTKNVTAVGFQCDGR-WMYTGSEDGTVKIWDLRSLS---------------------------CQRNYQHNSP 126 (311)
T ss_pred -----eccCCceEEEEEeecCe-EEEecCCCceEEEEeccCcc---------------------------cchhccCCCC
Confidence 14889999999999999 99999999999999999621 1222334589
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc------e
Q 008939 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR------K 374 (548)
Q Consensus 302 v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~------~ 374 (548)
|+++..+|+...|+++..+|.|+|||+.+..+.+.+. ...-.|.++...|||..|+.+...|..++|++-.. +
T Consensus 127 Vn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~ 206 (311)
T KOG0315|consen 127 VNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE 206 (311)
T ss_pred cceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce
Confidence 9999999999999999999999999999876655543 34467999999999999999999999999999654 4
Q ss_pred eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCcccc
Q 008939 375 VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHW 454 (548)
Q Consensus 375 ~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (548)
++..++.|+..+....++| |+ ++|++++.|.+++||+.+.- ...
T Consensus 207 P~~k~~ah~~~il~C~lSP-------d~------k~lat~ssdktv~iwn~~~~-~kl---------------------- 250 (311)
T KOG0315|consen 207 PVHKFQAHNGHILRCLLSP-------DV------KYLATCSSDKTVKIWNTDDF-FKL---------------------- 250 (311)
T ss_pred EhhheecccceEEEEEECC-------CC------cEEEeecCCceEEEEecCCc-eee----------------------
Confidence 6778889999999999999 99 89999999999999998865 211
Q ss_pred CCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCc
Q 008939 455 DNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE 517 (548)
Q Consensus 455 d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~ 517 (548)
-..+++|+..+.+.+|+-| +|+||+.|+.+|+|+++.+++
T Consensus 251 -----------------------e~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 251 -----------------------ELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE 292 (311)
T ss_pred -----------------------EEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCce
Confidence 1234678999999999998 599999999999999988763
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=272.62 Aligned_cols=324 Identities=19% Similarity=0.297 Sum_probs=272.8
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC-CcEEEEEeee
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS-GDVYSVSLRQ 207 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d-g~I~iwdl~~ 207 (548)
...+++++|++.-..|+++-.. ...+|++.. ...|+.+......+..++|+.. |..|+.|+.. |++.+|+...
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~--f~lih~LSis~~~I~t~~~N~t---GDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD--FNLIHSLSISDQKILTVSFNST---GDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCC--ceEEEEeecccceeeEEEeccc---CCEEEEcCCccceEEEEEeec
Confidence 4788999999999999998777 788999998 5599999999999999999998 8899999876 9999999876
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
. ..+. ....|...+++++++|||+ ++++|+.||.|+|||...
T Consensus 340 E------sYVl------KQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~S------------------------- 381 (893)
T KOG0291|consen 340 E------SYVL------KQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQS------------------------- 381 (893)
T ss_pred c------ceee------eccccccceeeEEECCCCc-EEEeccCCCcEEEEeccC-------------------------
Confidence 1 1111 1124899999999999999 999999999999999986
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecC-CceEEEEEccCCCEEEEEeCCC-eE
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-GALLCCAWSMDGKYILTGGEDD-LV 365 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~sgs~dg-~I 365 (548)
.-.+..+..|+..|+.+.|+..++.|++.+.||+||.||+...+.-.++.... -...|++..|.|.++++|+.|. .|
T Consensus 382 -gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~I 460 (893)
T KOG0291|consen 382 -GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEI 460 (893)
T ss_pred -ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEE
Confidence 34578889999999999999999999999999999999999888887776533 3578899999999999999886 69
Q ss_pred EEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC-eEEeeeecCCCCCCce
Q 008939 366 QVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD-EIVVPLRRGPLGGSPT 444 (548)
Q Consensus 366 ~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~-~~~~~~~~~~~~~~~~ 444 (548)
.||++++|+.+..+.||+++|.+++|+| +| ..|++++.|.+|++||+-.. ..+.+++..+....+.
T Consensus 461 fvWS~qTGqllDiLsGHEgPVs~l~f~~-------~~------~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vs 527 (893)
T KOG0291|consen 461 FVWSVQTGQLLDILSGHEGPVSGLSFSP-------DG------SLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVS 527 (893)
T ss_pred EEEEeecCeeeehhcCCCCcceeeEEcc-------cc------CeEEeccccceEEEEEeeccCceeeeEeeccceeEEE
Confidence 9999999999999999999999999999 88 79999999999999998654 4556677767888899
Q ss_pred ecCCCCccccCCeeeecccCCCCceeecCCCCceEEee--------------------cCCCCeeEEEEeCCe--EEEEE
Q 008939 445 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR--------------------VHTEPLSGLIFTQES--VLTVC 502 (548)
Q Consensus 445 ~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~--------------------~h~~~V~~l~fspd~--l~t~s 502 (548)
|.|++ ..+.+.++++.+.+||......+.... ......+.|++++|+ |++|+
T Consensus 528 frPdG------~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG 601 (893)
T KOG0291|consen 528 FRPDG------KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG 601 (893)
T ss_pred EcCCC------CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC
Confidence 99998 556677777777777765544332222 123578999999985 99999
Q ss_pred CCCeEEEEeCCCCC
Q 008939 503 REGHIKIWMRPGVA 516 (548)
Q Consensus 503 ~Dg~I~iW~~~~~~ 516 (548)
....|||++++.+.
T Consensus 602 ~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 602 ESNSICIYDVPEGV 615 (893)
T ss_pred CcccEEEEECchhh
Confidence 99999999987753
No 24
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.9e-32 Score=262.49 Aligned_cols=282 Identities=23% Similarity=0.392 Sum_probs=240.9
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
+.+|..++.+++|+|+++++++++.+ .+++|++.... .+..+..+...+.++.|.|+ +..|++++.+|.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--LLRTLKGHTGPVRDVAASAD---GTYLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--cEEEEecCCcceeEEEECCC---CCEEEEEcCCCeEEEEE
Confidence 34788999999999999999998866 99999999744 77777778778889999998 67899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+... +.+.... .|...+.++.|+|++. ++++++.|+.|++||++.
T Consensus 80 ~~~~-----~~~~~~~-------~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~---------------------- 124 (289)
T cd00200 80 LETG-----ECVRTLT-------GHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVET---------------------- 124 (289)
T ss_pred cCcc-----cceEEEe-------ccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCC----------------------
Confidence 9862 1221111 2677899999999977 888888899999999984
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
..++..+..|...|.+++|+|++.++++++.|+.|++||+++++.+..+..|...+.++.|+|+++.+++++.|+.
T Consensus 125 ----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 200 (289)
T cd00200 125 ----GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT 200 (289)
T ss_pred ----cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc
Confidence 2334555677789999999999999998888999999999989888888889889999999999999999999999
Q ss_pred EEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCce
Q 008939 365 VQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT 444 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 444 (548)
|++||+++++.+..+..|...|.++.|+| ++ .++++++.|+.|++||+.+++.+..+
T Consensus 201 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-------~~------~~~~~~~~~~~i~i~~~~~~~~~~~~---------- 257 (289)
T cd00200 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSP-------DG------YLLASGSEDGTIRVWDLRTGECVQTL---------- 257 (289)
T ss_pred EEEEECCCCceecchhhcCCceEEEEEcC-------CC------cEEEEEcCCCcEEEEEcCCceeEEEc----------
Confidence 99999999999998888999999999999 77 68888888999999999876654432
Q ss_pred ecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEe
Q 008939 445 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWM 511 (548)
Q Consensus 445 ~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~ 511 (548)
..|...|.++.|+|+ .|++++.||.|++|+
T Consensus 258 -------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 258 -------------------------------------SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -------------------------------------cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 247788999999996 599999999999996
No 25
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.2e-35 Score=265.53 Aligned_cols=283 Identities=18% Similarity=0.279 Sum_probs=236.6
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
...|+|+.|+. ..++++..| +|+|||.++ ...+..+..|.+.+.|+.|+. ..|++|++|.+|++||+.+
T Consensus 197 skgVYClQYDD--~kiVSGlrDnTikiWD~n~--~~c~~~L~GHtGSVLCLqyd~-----rviisGSSDsTvrvWDv~t- 266 (499)
T KOG0281|consen 197 SKGVYCLQYDD--EKIVSGLRDNTIKIWDKNS--LECLKILTGHTGSVLCLQYDE-----RVIVSGSSDSTVRVWDVNT- 266 (499)
T ss_pred CCceEEEEecc--hhhhcccccCceEEecccc--HHHHHhhhcCCCcEEeeeccc-----eEEEecCCCceEEEEeccC-
Confidence 56788888864 567888877 999999998 458889999999999999974 4899999999999999987
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
++.+...++ |...|..+.|+.. ++++++.|.++.|||+.... .
T Consensus 267 ----ge~l~tlih-------HceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps-----------------------~ 309 (499)
T KOG0281|consen 267 ----GEPLNTLIH-------HCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPT-----------------------D 309 (499)
T ss_pred ----CchhhHHhh-------hcceeEEEEEeCC---EEEEecCCceeEEEeccCch-----------------------H
Confidence 333333333 8899999999743 89999999999999998622 1
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 368 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vw 368 (548)
....+.+.+|..+|+.+.|+ .+++++++.|.+|++|++.+++.+.++.+|...|-|+.+ .++++++|+.|.+|++|
T Consensus 310 it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlw 385 (499)
T KOG0281|consen 310 ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 385 (499)
T ss_pred HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEE
Confidence 22345677888999999995 469999999999999999999999999999999999887 58899999999999999
Q ss_pred ECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCC
Q 008939 369 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTG 448 (548)
Q Consensus 369 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 448 (548)
|++.|.++..++||+.-|.++.|+. ..|++|+.||+|++||+..+...+... .
T Consensus 386 di~~G~cLRvLeGHEeLvRciRFd~---------------krIVSGaYDGkikvWdl~aaldpra~~-----~------- 438 (499)
T KOG0281|consen 386 DIECGACLRVLEGHEELVRCIRFDN---------------KRIVSGAYDGKIKVWDLQAALDPRAPA-----S------- 438 (499)
T ss_pred eccccHHHHHHhchHHhhhheeecC---------------ceeeeccccceEEEEecccccCCcccc-----c-------
Confidence 9999999999999999999999953 689999999999999998765322111 0
Q ss_pred CCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCC
Q 008939 449 SQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 449 ~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~ 516 (548)
.-++..+..|.+.|..+.|..-.|++++.|.+|.|||+..+.
T Consensus 439 --------------------------~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 439 --------------------------TLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred --------------------------chHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCC
Confidence 012334456899999999998889999999999999976543
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.4e-34 Score=267.52 Aligned_cols=266 Identities=17% Similarity=0.264 Sum_probs=229.1
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 253 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg 253 (548)
..|..+.|.|+ |+.|++|+..|.+.+|+.... .|..-...|..+|+++.|++++. .+++|+.+|
T Consensus 97 c~V~~v~WtPe---GRRLltgs~SGEFtLWNg~~f------------nFEtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG 160 (464)
T KOG0284|consen 97 CPVNVVRWTPE---GRRLLTGSQSGEFTLWNGTSF------------NFETILQAHDSPVRTMKWSHNGT-WMISGDKGG 160 (464)
T ss_pred cceeeEEEcCC---CceeEeecccccEEEecCcee------------eHHHHhhhhcccceeEEEccCCC-EEEEcCCCc
Confidence 46788899998 889999999999999987441 11111124899999999999999 999999999
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC-CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ-GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
.|++|+... +-++.++.|. ..|++++|+|+...+++++.||.|+|||....+
T Consensus 161 ~iKyWqpnm---------------------------nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k 213 (464)
T KOG0284|consen 161 MIKYWQPNM---------------------------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK 213 (464)
T ss_pred eEEecccch---------------------------hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc
Confidence 999999875 3355555555 899999999988899999999999999999888
Q ss_pred EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 333 LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 333 ~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
....+.+|.-.|.+++|+|...+|++|+.|..|++||.++++++.++.+|...|.++.|.| ++ ++|+
T Consensus 214 ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-------n~------N~Ll 280 (464)
T KOG0284|consen 214 EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-------NG------NWLL 280 (464)
T ss_pred hhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-------CC------CeeE
Confidence 8778899999999999999999999999999999999999999999999999999999999 88 7999
Q ss_pred EEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEE
Q 008939 413 SVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLI 492 (548)
Q Consensus 413 s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~ 492 (548)
+++.|..++++|+++-+ .++++++|...|+++.
T Consensus 281 t~skD~~~kv~DiR~mk-----------------------------------------------El~~~r~Hkkdv~~~~ 313 (464)
T KOG0284|consen 281 TGSKDQSCKVFDIRTMK-----------------------------------------------ELFTYRGHKKDVTSLT 313 (464)
T ss_pred EccCCceEEEEehhHhH-----------------------------------------------HHHHhhcchhhheeec
Confidence 99999999999998533 3445678999999999
Q ss_pred EeC---CeEEEEECCCeEEEEeCCCCC---ccccCCCCcEE--EecCCCCceEeeecc
Q 008939 493 FTQ---ESVLTVCREGHIKIWMRPGVA---ESQSSSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 493 fsp---d~l~t~s~Dg~I~iW~~~~~~---~~~~~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
|+| +.|.+|+.||.|..|.+...+ +....|...|+ ++.|=|..|++|...
T Consensus 314 WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd 371 (464)
T KOG0284|consen 314 WHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSND 371 (464)
T ss_pred cccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCC
Confidence 999 358999999999999988443 34446777887 556999999998665
No 27
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=237.45 Aligned_cols=292 Identities=14% Similarity=0.176 Sum_probs=233.4
Q ss_pred ccCCCCCCceeEEeCCC-CCEEEEecCC-eEEEEEccCCCC-CCeEEE-ecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 125 GASSSSTSMTNTNFDGK-GTYIIFNVGD-AIFISDLNSQDK-DPIKSI-HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~-g~~l~~~~~d-~v~vwd~~~~~~-~~i~~~-~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
...+|.+.+-.++|+|. |.+|++++.| .|+||+...+.. .....+ .+|+..|..++|+|. +++|++|+.|.++
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~---g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH---GRYLASASFDATV 85 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC---CcEEEEeeccceE
Confidence 45678889999999998 8889998888 999999986331 122222 357889999999999 8899999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.||.-.... -+.+. ..++|...|.|++|+++|. +||++++|..|.||.+..+..
T Consensus 86 ~Iw~k~~~e----fecv~------~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddE--------------- 139 (312)
T KOG0645|consen 86 VIWKKEDGE----FECVA------TLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDE--------------- 139 (312)
T ss_pred EEeecCCCc----eeEEe------eeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCc---------------
Confidence 999755311 11111 2235999999999999999 999999999999999885321
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC---CCeEEEeeeecCCceEEEEEccCCCEEE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS---KEQLICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~---~~~~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
...+..++.|...|..+.|+|...+|++++.|.+|++|+-. ..++++++.+|...|.+++|++.|..|+
T Consensus 140 --------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 140 --------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred --------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEE
Confidence 34577889999999999999999999999999999999876 3468899999999999999999999999
Q ss_pred EEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
++++|++|+||...+.- -..|...++.+.|. +| .|++++.|+.|+|+.-...-.-
T Consensus 212 s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--------~~-------~IaS~ggD~~i~lf~~s~~~d~------ 266 (312)
T KOG0645|consen 212 SCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--------NG-------VIASGGGDDAIRLFKESDSPDE------ 266 (312)
T ss_pred EecCCcceEeeeeccCc----chhcccceEeeeec--------cc-------ceEeccCCCEEEEEEecCCCCC------
Confidence 99999999999865221 12388899999995 34 7999999999999975521100
Q ss_pred CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCce-EEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEeCC
Q 008939 438 PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPL-VAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 438 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~-~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~ 513 (548)
+..+.+ .....|...|++|+|.|. .|++++.||.|++|.+.
T Consensus 267 -----------------------------------p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 267 -----------------------------------PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred -----------------------------------chHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 011111 122468889999999993 59999999999999874
No 28
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1e-30 Score=250.63 Aligned_cols=337 Identities=16% Similarity=0.265 Sum_probs=274.8
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
....+..+|.|+.|++..++.+.+.+++.+. .+.....|...++...|+|. |.++++|...|.|+|||..+.
T Consensus 20 ~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~--~~~iYtEH~~~vtVAkySPs---G~yiASGD~sG~vRIWdtt~~--- 91 (603)
T KOG0318|consen 20 VPIIIGGDPKGDNILYTNGKSVIIRNIDNPA--SVDIYTEHAHQVTVAKYSPS---GFYIASGDVSGKVRIWDTTQK--- 91 (603)
T ss_pred cceEeccCCCCCeEEEeCCCEEEEEECCCcc--ceeeeccccceeEEEEeCCC---ceEEeecCCcCcEEEEeccCc---
Confidence 3456788999999999999999999999855 56666668888999999999 889999999999999998752
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC---CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD---GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
..++ ..+.....++|.+|+|+.++.++.++|... |.+.+||..+
T Consensus 92 --~hiL-----Knef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~-------------------------- 138 (603)
T KOG0318|consen 92 --EHIL-----KNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN-------------------------- 138 (603)
T ss_pred --ceee-----eeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCC--------------------------
Confidence 1111 112224588999999999999666666432 5677777543
Q ss_pred CCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQV 367 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~v 367 (548)
.+-.+.+|...|++++|-|... .+++++.|+.|.+|+=---+...+++.|..-|+|+.|+|||+++++.+.|+.|.+
T Consensus 139 --SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~i 216 (603)
T KOG0318|consen 139 --SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYI 216 (603)
T ss_pred --ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEE
Confidence 3567788999999999999655 6899999999999987666777788889999999999999999999999999999
Q ss_pred EECCCceeEEecc---CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCce
Q 008939 368 WSMEDRKVVAWGE---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT 444 (548)
Q Consensus 368 wd~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 444 (548)
||-.+++.+..+. +|.+.|.+|.|+| |+ ..|++++.|.+++|||+.+..+++++.....+....
T Consensus 217 yDGktge~vg~l~~~~aHkGsIfalsWsP-------Ds------~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqq 283 (603)
T KOG0318|consen 217 YDGKTGEKVGELEDSDAHKGSIFALSWSP-------DS------TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQ 283 (603)
T ss_pred EcCCCccEEEEecCCCCccccEEEEEECC-------CC------ceEEEecCCceEEEEEeeccceEEEeecCCchhceE
Confidence 9999999999998 8999999999999 99 799999999999999999999999887644322211
Q ss_pred ecCCCCccccC-CeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCccc--
Q 008939 445 FSTGSQSAHWD-NVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQ-- 519 (548)
Q Consensus 445 ~~~~~~~~~~d-~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~-- 519 (548)
. ...|. ..+..-++.+.+.+++.....++..+.+|...|+++..+||. |++|+.||.|.-|+...+....
T Consensus 284 v-----G~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~ 358 (603)
T KOG0318|consen 284 V-----GCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA 358 (603)
T ss_pred E-----EEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccc
Confidence 1 22332 334556677788888888888999999999999999999974 9999999999999987765332
Q ss_pred -cCCCCcEEEe
Q 008939 520 -SSSSETVLST 529 (548)
Q Consensus 520 -~~~~~~v~~~ 529 (548)
..|...|..+
T Consensus 359 g~~h~nqI~~~ 369 (603)
T KOG0318|consen 359 GKGHTNQIKGM 369 (603)
T ss_pred cccccceEEEE
Confidence 3455666544
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-31 Score=274.92 Aligned_cols=285 Identities=22% Similarity=0.349 Sum_probs=239.2
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
.+..++.++.|+++|+.++++..+ .+++|++..........+..|...|.+++|+|+ +.++++++.|++|+|||++
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d---~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD---GSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC---CcEEEEecCCceEEEeecc
Confidence 347899999999999999998766 999999965332255566778889999999999 7799999999999999994
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
. ........ ..|...|++++|+|+++ ++++|+.|++|+|||++.
T Consensus 234 ~-----~~~~~~~l------~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~------------------------ 277 (456)
T KOG0266|consen 234 D-----DGRNLKTL------KGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRT------------------------ 277 (456)
T ss_pred C-----CCeEEEEe------cCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccC------------------------
Confidence 3 11222222 24999999999999996 999999999999999986
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe--EEEeeeecCCc--eEEEEEccCCCEEEEEeCC
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ--LICGGKSYYGA--LLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~--v~~l~~spdg~~l~sgs~d 362 (548)
..++..+.+|.+.|++++|++++++|++++.|+.|++||+.+++ ++..+..+... +.++.|+|++++|+++..|
T Consensus 278 --~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 278 --GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred --CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence 35688899999999999999999999999999999999999998 55666666555 9999999999999999999
Q ss_pred CeEEEEECCCceeEEeccCCCCCeEEE---EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC
Q 008939 363 DLVQVWSMEDRKVVAWGEGHNSWVSGV---AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL 439 (548)
Q Consensus 363 g~I~vwd~~~~~~~~~~~~h~~~V~~v---~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~ 439 (548)
+.+++||+..+.++..+.+|...+.++ .+.+ ++ .++++++.|+.|.+||+.++..+..+
T Consensus 356 ~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~~i~sg~~d~~v~~~~~~s~~~~~~l----- 417 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST-------GG------KLIYSGSEDGSVYVWDSSSGGILQRL----- 417 (456)
T ss_pred CeEEEEEccCCcceeeecccCCcceeEecccccC-------CC------CeEEEEeCCceEEEEeCCccchhhhh-----
Confidence 999999999999999999998764332 3333 66 79999999999999999986655433
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecC-CCCeeEEEEeCC--eEEEEE--CCCeEEEEeCC
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH-TEPLSGLIFTQE--SVLTVC--REGHIKIWMRP 513 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h-~~~V~~l~fspd--~l~t~s--~Dg~I~iW~~~ 513 (548)
.+| ...|..+.++|. .+++++ .|+.|++|..+
T Consensus 418 ------------------------------------------~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 ------------------------------------------EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ------------------------------------------cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 357 788899999985 477777 79999999865
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.4e-32 Score=268.09 Aligned_cols=294 Identities=18% Similarity=0.237 Sum_probs=243.5
Q ss_pred CCCCCceeEEeC-CCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 128 SSSTSMTNTNFD-GKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 128 ~h~~~v~~~~~~-~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
|..+.|+.+.|- |+..+++.+++. .+|+|++.+.. -.-+..|.+.+.++.-..+ |.+|++|+.|..+++|-+
T Consensus 321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~---c~ii~GH~e~vlSL~~~~~---g~llat~sKD~svilWr~ 394 (775)
T KOG0319|consen 321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY---CQIIPGHTEAVLSLDVWSS---GDLLATGSKDKSVILWRL 394 (775)
T ss_pred CCchhheeeeecCCccceEEEEeCCCceEEEecCCCc---eEEEeCchhheeeeeeccc---CcEEEEecCCceEEEEEe
Confidence 456777788775 567788888777 99999888743 2367789999999884333 679999999999999988
Q ss_pred eecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
+.. ..+.. .......|...|.+++++..+...|++++.|+++++|++........ +..
T Consensus 395 ~~~---~~~~~-----~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--~~~------------ 452 (775)
T KOG0319|consen 395 NNN---CSKSL-----CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--PIV------------ 452 (775)
T ss_pred cCC---cchhh-----hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--cce------------
Confidence 431 01111 11223469999999999988887999999999999999986221111 100
Q ss_pred CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeE
Q 008939 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I 365 (548)
.+.-..-..|...|+|++++|+.+++|+|+.|.+.+||+++..+++..+.+|...|.|+.|+|..+.++++|.|.+|
T Consensus 453 ---~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~Tv 529 (775)
T KOG0319|consen 453 ---LTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTV 529 (775)
T ss_pred ---ehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceE
Confidence 01111335688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCcee
Q 008939 366 QVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTF 445 (548)
Q Consensus 366 ~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~ 445 (548)
+||.+.+..++++|.||+..|..+.|-. +| ..|+|++.||.|+||++++++|+.++.
T Consensus 530 KIW~is~fSClkT~eGH~~aVlra~F~~-------~~------~qliS~~adGliKlWnikt~eC~~tlD---------- 586 (775)
T KOG0319|consen 530 KIWSISTFSCLKTFEGHTSAVLRASFIR-------NG------KQLISAGADGLIKLWNIKTNECEMTLD---------- 586 (775)
T ss_pred EEEEeccceeeeeecCccceeEeeeeee-------CC------cEEEeccCCCcEEEEeccchhhhhhhh----------
Confidence 9999999999999999999999999987 77 799999999999999999999876554
Q ss_pred cCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeC
Q 008939 446 STGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMR 512 (548)
Q Consensus 446 ~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~ 512 (548)
.|.+.|++++-++. .++||+.||.|.+|.=
T Consensus 587 -------------------------------------~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 587 -------------------------------------AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred -------------------------------------hccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 59999999999995 5899999999999983
No 31
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-31 Score=264.21 Aligned_cols=305 Identities=18% Similarity=0.255 Sum_probs=254.8
Q ss_pred CCCCcccccccCCCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE
Q 008939 116 SGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL 195 (548)
Q Consensus 116 ~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~ 195 (548)
....++..+...+|.+.|..++++.+...+++++++.+.||+..+.+ .++++... .+.|..|-|. ++++++|.
T Consensus 359 p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~k--ciRTi~~~--y~l~~~Fvpg---d~~Iv~G~ 431 (888)
T KOG0306|consen 359 PEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLK--CIRTITCG--YILASKFVPG---DRYIVLGT 431 (888)
T ss_pred ccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcc--eeEEeccc--cEEEEEecCC---CceEEEec
Confidence 34446668899999999999999999999999999999999999855 88888743 8999999998 88999999
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD 275 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 275 (548)
.+|.+.+||+... . +... ...|.+.|.+++.+|++. .+++|+.|.+|++||....... +...
T Consensus 432 k~Gel~vfdlaS~-----~-l~Et------i~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~----~gt~- 493 (888)
T KOG0306|consen 432 KNGELQVFDLASA-----S-LVET------IRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSV----PGTQ- 493 (888)
T ss_pred cCCceEEEEeehh-----h-hhhh------hhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEecc----Cccc-
Confidence 9999999999872 1 1111 114899999999999999 8999999999999998541110 0000
Q ss_pred cceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCE
Q 008939 276 QTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355 (548)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~ 355 (548)
.....+ ...+.++. +..|.|+.+|||+++|+++--|.+|+||-+.+-+....+.+|.-+|.|+..+||++.
T Consensus 494 ~k~lsl--------~~~rtLel-~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkl 564 (888)
T KOG0306|consen 494 KKVLSL--------KHTRTLEL-EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKL 564 (888)
T ss_pred ceeeee--------ccceEEec-cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCe
Confidence 000000 00111111 378999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 356 l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
+++|+.|..|+||-++-|.|-..+.+|.+.|.+|.|.| .. ..+.++|.|+.|+-||-..-+++
T Consensus 565 ivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-------~~------~~FFt~gKD~kvKqWDg~kFe~i---- 627 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-------KT------HLFFTCGKDGKVKQWDGEKFEEI---- 627 (888)
T ss_pred EEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc-------cc------eeEEEecCcceEEeechhhhhhh----
Confidence 99999999999999999999999999999999999999 66 79999999999999997765544
Q ss_pred cCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCC
Q 008939 436 RGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~ 513 (548)
..+.+|...|++++..|+ ++++++.|..||+|+..
T Consensus 628 -------------------------------------------q~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 628 -------------------------------------------QKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred -------------------------------------------eeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 345579999999999998 49999999999999976
Q ss_pred C
Q 008939 514 G 514 (548)
Q Consensus 514 ~ 514 (548)
.
T Consensus 665 d 665 (888)
T KOG0306|consen 665 D 665 (888)
T ss_pred C
Confidence 5
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.9e-30 Score=284.41 Aligned_cols=296 Identities=14% Similarity=0.189 Sum_probs=230.3
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCC------CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK------DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG 198 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~------~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg 198 (548)
..+|.+.|.+++|+++|+++++++.| .|+||++..... .++..+. +...+.+++|+|.. +.+|++++.||
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~--~~~las~~~Dg 555 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYI--KSQVASSNFEG 555 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCC--CCEEEEEeCCC
Confidence 34589999999999999999998888 999999864210 1333333 34578999998862 56899999999
Q ss_pred cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
.|++||+.+. +.+.. . ..|...|++++|+| ++. +|++|+.||.|++||++..
T Consensus 556 ~v~lWd~~~~-----~~~~~-~------~~H~~~V~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~-------------- 608 (793)
T PLN00181 556 VVQVWDVARS-----QLVTE-M------KEHEKRVWSIDYSSADPT-LLASGSDDGSVKLWSINQG-------------- 608 (793)
T ss_pred eEEEEECCCC-----eEEEE-e------cCCCCCEEEEEEcCCCCC-EEEEEcCCCEEEEEECCCC--------------
Confidence 9999998751 22211 1 23889999999997 455 9999999999999999762
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEEC-CCCCEEEEEECCCeEEEEeCCCCe-EEEeeeecCCceEEEEEccCCCE
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFS-TDGTYLATVGRDGYLRVFDYSKEQ-LICGGKSYYGALLCCAWSMDGKY 355 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~g~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~l~~spdg~~ 355 (548)
..+..+..+ ..|.++.|+ +++.+|++|+.|+.|++||+++.+ .+..+.+|...|.++.|. ++.+
T Consensus 609 ------------~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~ 674 (793)
T PLN00181 609 ------------VSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSST 674 (793)
T ss_pred ------------cEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCE
Confidence 223333333 578999995 479999999999999999998765 466778899999999997 7789
Q ss_pred EEEEeCCCeEEEEECCCc------eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 356 ILTGGEDDLVQVWSMEDR------KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 356 l~sgs~dg~I~vwd~~~~------~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
|++++.|+.|++||++.. .++..+.+|...+..+.|+| ++ .+|++++.|+.|++|+.....
T Consensus 675 lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~-------~~------~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 675 LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV-------SD------GYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred EEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC-------CC------CEEEEEeCCCEEEEEECCCCC
Confidence 999999999999999743 56788999999999999999 87 699999999999999987665
Q ss_pred EEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeE
Q 008939 430 IVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHI 507 (548)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I 507 (548)
.+..+..... + . ..-.....|...|.+++|+|+ .|++|+.||.|
T Consensus 742 ~~~s~~~~~~---------------~---------~----------~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 742 PVLSYKFKTI---------------D---------P----------VSGLEVDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred ceEEEecccC---------------C---------c----------ccccccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 4433221000 0 0 000012346678999999997 49999999999
Q ss_pred EEEeC
Q 008939 508 KIWMR 512 (548)
Q Consensus 508 ~iW~~ 512 (548)
+||++
T Consensus 788 ~i~~~ 792 (793)
T PLN00181 788 KILEM 792 (793)
T ss_pred EEEec
Confidence 99996
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-31 Score=244.73 Aligned_cols=283 Identities=14% Similarity=0.167 Sum_probs=238.3
Q ss_pred CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCC
Q 008939 163 KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG 242 (548)
Q Consensus 163 ~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~ 242 (548)
++..+.+..|..-|.|+++.|. ...+++|+.|+.|.|||+.+. ++.... .+|...|..+++++-.
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~---n~wf~tgs~DrtikIwDlatg------~Lkltl------tGhi~~vr~vavS~rH 205 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPG---NEWFATGSADRTIKIWDLATG------QLKLTL------TGHIETVRGVAVSKRH 205 (460)
T ss_pred ceehhhhhhccceEEEEeeCCC---ceeEEecCCCceeEEEEcccC------eEEEee------cchhheeeeeeecccC
Confidence 3455667778899999999998 889999999999999999982 222222 2488999999999999
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCe
Q 008939 243 DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGY 322 (548)
Q Consensus 243 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~ 322 (548)
. +|++++.|+.|+.||+.. .+.++.+++|-..|.|++.+|.-..|++++.|..
T Consensus 206 p-YlFs~gedk~VKCwDLe~--------------------------nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst 258 (460)
T KOG0285|consen 206 P-YLFSAGEDKQVKCWDLEY--------------------------NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDST 258 (460)
T ss_pred c-eEEEecCCCeeEEEechh--------------------------hhhHHHhccccceeEEEeccccceeEEecCCcce
Confidence 9 999999999999999986 3567888999999999999998899999999999
Q ss_pred EEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCC
Q 008939 323 LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDG 402 (548)
Q Consensus 323 v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg 402 (548)
+||||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++||++.++....+..|...|.+++.+| ..
T Consensus 259 ~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-------~e 331 (460)
T KOG0285|consen 259 IRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-------KE 331 (460)
T ss_pred EEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC-------ch
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999 65
Q ss_pred CccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee
Q 008939 403 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR 482 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~ 482 (548)
+.+++++.| .|+-|++..++.++. +.
T Consensus 332 ------~~fASas~d-nik~w~~p~g~f~~n-----------------------------------------------ls 357 (460)
T KOG0285|consen 332 ------NLFASASPD-NIKQWKLPEGEFLQN-----------------------------------------------LS 357 (460)
T ss_pred ------hhhhccCCc-cceeccCCccchhhc-----------------------------------------------cc
Confidence 688888877 588898887765533 34
Q ss_pred cCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCcccc----------CCCCcEE--EecCCCCceEeeecc--ccccc
Q 008939 483 VHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAESQS----------SSSETVL--STSSKDKPLLSSKVV--TSSYR 547 (548)
Q Consensus 483 ~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~~~~----------~~~~~v~--~~s~d~~~l~s~~~~--g~~~~ 547 (548)
+|..-|+.++...|. +++|++.|.|.+||...+---+. ..+..|+ +|--.+..|+++... .-+||
T Consensus 358 gh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 358 GHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred cccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 689999999998875 89999999999999876542222 1233455 444566788888544 66666
Q ss_pred C
Q 008939 548 Q 548 (548)
Q Consensus 548 ~ 548 (548)
|
T Consensus 438 e 438 (460)
T KOG0285|consen 438 E 438 (460)
T ss_pred c
Confidence 4
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-31 Score=257.59 Aligned_cols=251 Identities=16% Similarity=0.229 Sum_probs=224.8
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
.+...|-++.|+|...+++.+--+ .|.||+.+++. .+++++.....+....|-+. .+.+++|+.|.+|++|+..
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt--mVksfeV~~~PvRa~kfiaR---knWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT--MVKSFEVSEVPVRAAKFIAR---KNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccce--eeeeeeecccchhhheeeec---cceEEEecCCceEEEEecc
Confidence 366778899999999999998766 99999999966 89999999889999999887 7899999999999999998
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
+ ++++.... .|.+-|+||+.+|..+ ++++++.|-.|++||.+..
T Consensus 86 t-----~ekV~~Fe-------AH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~----------------------- 129 (794)
T KOG0276|consen 86 T-----GEKVKTFE-------AHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENE----------------------- 129 (794)
T ss_pred c-----ceeeEEee-------ccccceeeeeecCCCC-eEEecCCccEEEEeeccCc-----------------------
Confidence 7 55555443 3999999999999999 9999999999999999863
Q ss_pred CCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC--CEEEEEeCCC
Q 008939 287 SKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG--KYILTGGEDD 363 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg--~~l~sgs~dg 363 (548)
-...+.+.+|+.-|++++|.| |.+.+++++-|++|+||.+....+..++++|...|+|+.|-+-| .+|++|++|.
T Consensus 130 --wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 130 --WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred --eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence 345678899999999999999 78899999999999999999999999999999999999998755 6999999999
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
+|+|||.++..|+++++||...|+.+.|+| .= ..|++|++||+++||+-.+-++..++
T Consensus 208 tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-------~l------piiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 208 TIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-------EL------PIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred eEEEeecchHHHHHHhhcccccceEEEecC-------CC------cEEEEecCCccEEEecCcceehhhhh
Confidence 999999999999999999999999999999 44 68999999999999998876655444
No 35
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-31 Score=246.29 Aligned_cols=290 Identities=16% Similarity=0.201 Sum_probs=236.2
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccC-CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNS-QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
...+..|...|-.+.|+++|+++|+++.| +..||++.. .+.+..+++..|...|..+.|+|+ .++|++++.+..+
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD---dryLlaCg~~e~~ 293 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD---DRYLLACGFDEVL 293 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC---CCeEEecCchHhe
Confidence 44667899999999999999999999998 899998654 334567788889999999999999 7899999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.+||+.+. ....... . .+...+.+++|.||+. .|++|+.|+.+..||++.+
T Consensus 294 ~lwDv~tg-----d~~~~y~----~--~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn----------------- 344 (519)
T KOG0293|consen 294 SLWDVDTG-----DLRHLYP----S--GLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGN----------------- 344 (519)
T ss_pred eeccCCcc-----hhhhhcc----c--CcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcc-----------------
Confidence 99999872 2221111 1 1467899999999999 8999999999999999742
Q ss_pred eecCCCCCCCCeeEeeec-CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE
Q 008939 281 VAHPRYSKSNPIARWHIC-QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
.+..|++- ...|.+++..+||+++++.+.|..|++++.++...+..+. ...+|+++..|.|++++++-
T Consensus 345 ----------~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 345 ----------ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVN 413 (519)
T ss_pred ----------hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEE
Confidence 22233322 1468999999999999999999999999998766554433 45789999999999999999
Q ss_pred eCCCeEEEEECCCceeEEeccCCCCCeE--EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 360 GEDDLVQVWSMEDRKVVAWGEGHNSWVS--GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 360 s~dg~I~vwd~~~~~~~~~~~~h~~~V~--~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
-.+..|++||+++.+.+..+.||...-. .-+|--. +. ..+++|++|+.|+||+..++.++.
T Consensus 414 L~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~------~~------~fiaSGSED~kvyIWhr~sgkll~----- 476 (519)
T KOG0293|consen 414 LQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG------ND------KFIASGSEDSKVYIWHRISGKLLA----- 476 (519)
T ss_pred cccCeeEEeecchhhHHHHhhcccccceEEEeccCCC------Cc------ceEEecCCCceEEEEEccCCceeE-----
Confidence 9999999999999999999999976433 3345210 21 589999999999999998877654
Q ss_pred CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEeCCC
Q 008939 438 PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 438 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~ 514 (548)
.+.||...|++|+|+|. .+++|++||+||||....
T Consensus 477 ------------------------------------------~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 477 ------------------------------------------VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ------------------------------------------eecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 45679999999999994 599999999999998654
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.9e-30 Score=225.56 Aligned_cols=280 Identities=19% Similarity=0.253 Sum_probs=227.9
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
.++.+..|++.+..++|+|.. |..|++++.|..|++|++.. +.... ......+ .|+..|+.++|+|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~--g~ilAscg~Dk~vriw~~~~-----~~s~~-ck~vld~--~hkrsVRsvAwsp~g~- 74 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGK--GVILASCGTDKAVRIWSTSS-----GDSWT-CKTVLDD--GHKRSVRSVAWSPHGR- 74 (312)
T ss_pred eEEeecCCCCcEEEEEeccCC--ceEEEeecCCceEEEEecCC-----CCcEE-EEEeccc--cchheeeeeeecCCCc-
Confidence 566777888899999999973 56899999999999999874 11111 1111112 4899999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
+|++++.|.++.||.-..+ ..+.+..+.+|+..|.|++|+++|.+||+++.|+.|-
T Consensus 75 ~La~aSFD~t~~Iw~k~~~------------------------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVW 130 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDG------------------------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVW 130 (312)
T ss_pred EEEEeeccceEEEeecCCC------------------------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEE
Confidence 9999999999999986531 2456889999999999999999999999999999999
Q ss_pred EEeCCCC---eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC---CceeEEeccCCCCCeEEEEEecCCCCC
Q 008939 325 VFDYSKE---QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME---DRKVVAWGEGHNSWVSGVAFDSYWSQP 398 (548)
Q Consensus 325 vwd~~~~---~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~---~~~~~~~~~~h~~~V~~v~~~p~~~~~ 398 (548)
||.+..+ +++..++.|...|.-+.|+|...+|++++.|++|++|+-. +.++++++.+|...|.+++|+|
T Consensus 131 iWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~----- 205 (312)
T KOG0645|consen 131 IWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN----- 205 (312)
T ss_pred EEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-----
Confidence 9999744 5677899999999999999999999999999999999876 3468999999999999999999
Q ss_pred CCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCce
Q 008939 399 NSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPL 478 (548)
Q Consensus 399 ~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~ 478 (548)
.| .+|++++.|+.++||-+.+.- .
T Consensus 206 --~G------~rl~s~sdD~tv~Iw~~~~~~-----~------------------------------------------- 229 (312)
T KOG0645|consen 206 --IG------SRLVSCSDDGTVSIWRLYTDL-----S------------------------------------------- 229 (312)
T ss_pred --CC------ceEEEecCCcceEeeeeccCc-----c-------------------------------------------
Confidence 88 799999999999999865211 1
Q ss_pred EEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCC-c--------cccCCCCcEE--EecCC-CCceEeeeccc
Q 008939 479 VAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVA-E--------SQSSSSETVL--STSSK-DKPLLSSKVVT 543 (548)
Q Consensus 479 ~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~-~--------~~~~~~~~v~--~~s~d-~~~l~s~~~~g 543 (548)
..|...++.+.|..+.|++++.|+.|+++...... + ....|.-.|. .+.|. ..+|+++...|
T Consensus 230 ---~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG 303 (312)
T KOG0645|consen 230 ---GMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDG 303 (312)
T ss_pred ---hhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCc
Confidence 13778899999995569999999999999865431 1 1123444443 77884 56688877665
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-31 Score=243.19 Aligned_cols=290 Identities=12% Similarity=0.149 Sum_probs=238.1
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
....+..+...++.+.|.|+ -..+++++.|+.|++||..+. .+.. ..++|...+.+|+|+..|.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~---~~~v~~as~d~tikv~D~~tg------~~e~------~LrGHt~sv~di~~~a~Gk- 163 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPS---EALVVSASEDATIKVFDTETG------ELER------SLRGHTDSVFDISFDASGK- 163 (406)
T ss_pred chhhhhccccceeeeeeccC---ceEEEEecCCceEEEEEccch------hhhh------hhhccccceeEEEEecCcc-
Confidence 45555667778899999998 567888889999999999872 1221 1235888999999999998
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
+|++++.|-.+++||..+. ...++.+.+|+..|.+++|-|.|.+|++++.|.+|+
T Consensus 164 ~l~tcSsDl~~~LWd~~~~-------------------------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik 218 (406)
T KOG0295|consen 164 YLATCSSDLSAKLWDFDTF-------------------------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIK 218 (406)
T ss_pred EEEecCCccchhheeHHHH-------------------------HHHHHHhcCcccceeeEEEEecCCeeeeccccccee
Confidence 9999999999999999762 233556677889999999999999999999999999
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCC--
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDG-- 402 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg-- 402 (548)
.|++.++.++.++.+|...|.-++.+.||.++++++.|.+|++|-+.++++...++.|+-+|.+++|.|.-..|+...
T Consensus 219 ~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at 298 (406)
T KOG0295|consen 219 AWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEAT 298 (406)
T ss_pred EEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998644332110
Q ss_pred CccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee
Q 008939 403 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR 482 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~ 482 (548)
........+++++.|+.|++||+.++.|+.++ .
T Consensus 299 ~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL-----------------------------------------------~ 331 (406)
T KOG0295|consen 299 GSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL-----------------------------------------------V 331 (406)
T ss_pred CCCCCccEEEeecccceEEEEeccCCeEEEEE-----------------------------------------------e
Confidence 00112368999999999999999999877544 4
Q ss_pred cCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCcccc--CCCCcEE--EecCCCCceEeeecc
Q 008939 483 VHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQS--SSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 483 ~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~~--~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
+|.+.|.+++|+|. +|+++.+|+++++||+........ .|..-+. .|--+--++++|.+.
T Consensus 332 ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd 397 (406)
T KOG0295|consen 332 GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD 397 (406)
T ss_pred cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecccc
Confidence 69999999999996 599999999999999988763322 4444444 455555578888664
No 38
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=3.3e-30 Score=231.40 Aligned_cols=285 Identities=16% Similarity=0.217 Sum_probs=237.8
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
+-..+|.+.|..+.|+|+|.++++++.| .|.+|++... .+....+..|...|..+.|.++ ++.|++++.|.+|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d---~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRD---GSHILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-ccceeeeccccceeEeeeeccC---CCEEEEecCCceEEE
Confidence 4567899999999999999999999988 9999996643 3567777899999999999999 889999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
||+++ ++..... +.|...|+.+.-+.-|..++.+++.|++++|||+++... ...++
T Consensus 117 wD~~t-----G~~~rk~-------k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~~----------- 172 (338)
T KOG0265|consen 117 WDAET-----GKRIRKH-------KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTFE----------- 172 (338)
T ss_pred Eeccc-----ceeeehh-------ccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhccc-----------
Confidence 99988 3333221 248888999886666666888899999999999996321 11110
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
.+..++++.|..++..+.+|+-|+.|++||++.+.....+.+|.+.|+.+..+|+|.++.+-+.|
T Consensus 173 ---------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd 237 (338)
T KOG0265|consen 173 ---------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD 237 (338)
T ss_pred ---------------cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccccc
Confidence 12568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCC----ceeEEeccCCC----CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 363 DLVQVWSMED----RKVVAWGEGHN----SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 363 g~I~vwd~~~----~~~~~~~~~h~----~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
.++++||++. .+++..+++|. ......+|+| ++ ..+.+++.|..+.+||.....++.
T Consensus 238 ~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-------~~------~~i~ags~dr~vyvwd~~~r~~ly-- 302 (338)
T KOG0265|consen 238 NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-------NG------TKITAGSADRFVYVWDTTSRRILY-- 302 (338)
T ss_pred ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-------CC------CccccccccceEEEeecccccEEE--
Confidence 9999999975 35677887754 3345677888 88 688999999999999987755543
Q ss_pred ecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEe
Q 008939 435 RRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWM 511 (548)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~ 511 (548)
.+.||.+.|+.++|+|. .|.+++.|.+|.+=+
T Consensus 303 ---------------------------------------------klpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 303 ---------------------------------------------KLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ---------------------------------------------EcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 34579999999999996 589999999998744
No 39
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=6.9e-30 Score=234.99 Aligned_cols=321 Identities=13% Similarity=0.148 Sum_probs=260.9
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+.+..+..|...+.+++.+|+ .+++++|+.|..-++|++.+. ..+.. ...|+..|+++.|+.++.
T Consensus 55 dS~~tF~~H~~svFavsl~P~---~~l~aTGGgDD~AflW~~~~g-----e~~~e-------ltgHKDSVt~~~Fshdgt 119 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPN---NNLVATGGGDDLAFLWDISTG-----EFAGE-------LTGHKDSVTCCSFSHDGT 119 (399)
T ss_pred cceeehhhcCCceEEEEeCCC---CceEEecCCCceEEEEEccCC-----cceeE-------ecCCCCceEEEEEccCce
Confidence 356777889999999999997 889999999999999999872 22111 124999999999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
+||+|..+|.|+||+..+.+.. ..+...-..|.=+.|+|-+..|+.|+.||.+
T Consensus 120 -lLATGdmsG~v~v~~~stg~~~--------------------------~~~~~e~~dieWl~WHp~a~illAG~~DGsv 172 (399)
T KOG0296|consen 120 -LLATGDMSGKVLVFKVSTGGEQ--------------------------WKLDQEVEDIEWLKWHPRAHILLAGSTDGSV 172 (399)
T ss_pred -EEEecCCCccEEEEEcccCceE--------------------------EEeecccCceEEEEecccccEEEeecCCCcE
Confidence 9999999999999999873221 1111122567889999999999999999999
Q ss_pred EEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC-CCCeEEEEEecCCCCCCCCC
Q 008939 324 RVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH-NSWVSGVAFDSYWSQPNSDG 402 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~dg 402 (548)
.+|.+.++.....+.+|..++++=.|.|||+.++++..|++|++||+.+++++..+... .....++.++. ++
T Consensus 173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-------~~ 245 (399)
T KOG0296|consen 173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-------AG 245 (399)
T ss_pred EEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-------cc
Confidence 99999988888889999999999999999999999999999999999999999888742 34556777766 66
Q ss_pred CccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC---------CCCCCceecCCCCccccCCeeeecccCCCCceeecC
Q 008939 403 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG---------PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVP 473 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~ 473 (548)
..+++|..++.+++-+..+++.+...... ....++.+.+.+. --...+.|.+++.+-+||+.
T Consensus 246 ------~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss---~lpL~A~G~vdG~i~iyD~a 316 (399)
T KOG0296|consen 246 ------STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS---KLPLAACGSVDGTIAIYDLA 316 (399)
T ss_pred ------ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc---ccchhhcccccceEEEEecc
Confidence 78999999999999999999888766531 2223333333321 11234789999999999998
Q ss_pred CCCceEEeecCCCCeeEEEEeC-CeEEEEECCCeEEEEeCCCCC--ccccCCCCcEE--EecCCCCceEeeeccc
Q 008939 474 KLSPLVAHRVHTEPLSGLIFTQ-ESVLTVCREGHIKIWMRPGVA--ESQSSSSETVL--STSSKDKPLLSSKVVT 543 (548)
Q Consensus 474 ~~~~~~~~~~h~~~V~~l~fsp-d~l~t~s~Dg~I~iW~~~~~~--~~~~~~~~~v~--~~s~d~~~l~s~~~~g 543 (548)
...+-... .|..+|+.+.|-+ ++|++++.||.|++||.+++. ....+|...|+ +++||.+++++....+
T Consensus 317 ~~~~R~~c-~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 317 ASTLRHIC-EHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred cchhheec-cCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 87766655 4899999999999 579999999999999988876 45568999999 7789999999987663
No 40
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=1.2e-31 Score=254.84 Aligned_cols=286 Identities=19% Similarity=0.298 Sum_probs=242.6
Q ss_pred ccccCCCCCCceeEEeCC-CCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 123 SLGASSSSTSMTNTNFDG-KGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~-~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
...+++|...|.++.|.| .+.++++++.| .|+||++-. ..+.++++..|...|..++|+++ +..+++++.|+.|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~---g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNC---GTSFLSASFDRFL 282 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhhhcchhhhhhhhcccc---CCeeeeeecceee
Confidence 567899999999999999 88888888888 999999886 24699999999999999999999 8889999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
++||+++ ++ +....+ ....++|+.|+|++.++|++|..|+.|+.||++.+
T Consensus 283 KlwDtET-----G~-~~~~f~-------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----------------- 332 (503)
T KOG0282|consen 283 KLWDTET-----GQ-VLSRFH-------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----------------- 332 (503)
T ss_pred eeecccc-----ce-EEEEEe-------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch-----------------
Confidence 9999998 33 332232 35678999999999779999999999999999972
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEccCCCEEEEE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~sg 359 (548)
+.++.+..|-++|..+.|-++++++++.+.|+.++||+.+....+..+. .+.-...||..+|++++++.-
T Consensus 333 ---------kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ 403 (503)
T KOG0282|consen 333 ---------KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ 403 (503)
T ss_pred ---------HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh
Confidence 4466677788999999999999999999999999999999876654322 223356789999999999999
Q ss_pred eCCCeEEEEECCCc---eeEEeccCCC--CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 360 GEDDLVQVWSMEDR---KVVAWGEGHN--SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 360 s~dg~I~vwd~~~~---~~~~~~~~h~--~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
+.|+.|.++.+... .....+++|. +.-..+.|+| || .+|++|..||.+.+||.++-+++..
T Consensus 404 s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp-------DG------~~l~SGdsdG~v~~wdwkt~kl~~~- 469 (503)
T KOG0282|consen 404 SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP-------DG------RTLCSGDSDGKVNFWDWKTTKLVSK- 469 (503)
T ss_pred ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC-------CC------CeEEeecCCccEEEeechhhhhhhc-
Confidence 99999999987643 3445677885 4566889999 99 7999999999999999998665443
Q ss_pred ecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEe
Q 008939 435 RRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWM 511 (548)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~ 511 (548)
++.|.+++..+.|+|. .++|++.||.|++|+
T Consensus 470 ----------------------------------------------lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 470 ----------------------------------------------LKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ----------------------------------------------cccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 4468999999999995 499999999999996
No 41
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=4.9e-30 Score=236.97 Aligned_cols=308 Identities=17% Similarity=0.229 Sum_probs=238.7
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
|..=|..+... ++.|++++.| .++|||... +.+..+..|.+.+..++|--.......+++++.|..+++|..+.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCC---ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 44444444444 6788888877 999999984 47788888999998777755433345799999999999998876
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc-cceeeeecCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD-QTQFSVAHPRY 286 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 286 (548)
. ....... +...+|+..|-++...+++. .+++|+.|.+|.||+...+. ...+..... ...........
T Consensus 179 ~-----~~~~~~~---~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~--~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 179 G-----ENKVKAL---KVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDE--EDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred c-----hhhhhHH---hHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCc--cccccccchhhhhhhhhhhcc
Confidence 2 1111111 11125999999999999999 99999999999999943211 111111110 00000111123
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEE
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQ 366 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~ 366 (548)
..+.|+..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.++..+.. ...++|+.++|..++|++|+.|..|+
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred cccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCcee
Confidence 45789999999999999999988 66899999999999999999999888775 46799999999999999999999999
Q ss_pred EEECCCce---eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCc
Q 008939 367 VWSMEDRK---VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSP 443 (548)
Q Consensus 367 vwd~~~~~---~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~ 443 (548)
+||.+++. ..+.|.+|.++|.++.|+| ... ++|++++.|+++++||+++..
T Consensus 326 l~DPR~~~gs~v~~s~~gH~nwVssvkwsp-------~~~-----~~~~S~S~D~t~klWDvRS~k-------------- 379 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGHKNWVSSVKWSP-------TNE-----FQLVSGSYDNTVKLWDVRSTK-------------- 379 (423)
T ss_pred ecCCCCCCCceeEEeeecchhhhhheecCC-------CCc-----eEEEEEecCCeEEEEEeccCC--------------
Confidence 99998863 5678889999999999999 331 799999999999999998744
Q ss_pred eecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC-eEEEEECCCeEEEEeC
Q 008939 444 TFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLTVCREGHIKIWMR 512 (548)
Q Consensus 444 ~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd-~l~t~s~Dg~I~iW~~ 512 (548)
.|+..+.+|.+.|.++.|... +|++|+.|.+|+|+.-
T Consensus 380 --------------------------------~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 380 --------------------------------APLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred --------------------------------CcceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence 244455679999999999986 7999999999999874
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=3.1e-29 Score=242.77 Aligned_cols=277 Identities=22% Similarity=0.350 Sum_probs=228.3
Q ss_pred EEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEE
Q 008939 167 KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAF 246 (548)
Q Consensus 167 ~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l 246 (548)
..+..|...+.+++|+|+ +.+|++++.+|.|++|++... +..... ..|...+..+.|+|+++ .|
T Consensus 3 ~~~~~h~~~i~~~~~~~~---~~~l~~~~~~g~i~i~~~~~~-----~~~~~~-------~~~~~~i~~~~~~~~~~-~l 66 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPD---GKLLATGSGDGTIKVWDLETG-----ELLRTL-------KGHTGPVRDVAASADGT-YL 66 (289)
T ss_pred hHhcccCCCEEEEEEcCC---CCEEEEeecCcEEEEEEeeCC-----CcEEEE-------ecCCcceeEEEECCCCC-EE
Confidence 345568889999999998 789999999999999998862 111111 13677889999999997 89
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 008939 247 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVF 326 (548)
Q Consensus 247 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vw 326 (548)
++++.||.|++||+... ..+..+..|...|.++.|+++++++++++.|+.|++|
T Consensus 67 ~~~~~~~~i~i~~~~~~--------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 120 (289)
T cd00200 67 ASGSSDKTIRLWDLETG--------------------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120 (289)
T ss_pred EEEcCCCeEEEEEcCcc--------------------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEE
Confidence 99999999999999852 3355566777899999999998888888889999999
Q ss_pred eCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccc
Q 008939 327 DYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAET 406 (548)
Q Consensus 327 d~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~ 406 (548)
|+++++.+..+..|...+.+++|+|+++++++++.|+.|++||+++++.+..+..|...|.++.|+| ++
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-------~~---- 189 (289)
T cd00200 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-------DG---- 189 (289)
T ss_pred ECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC-------Cc----
Confidence 9998988888888999999999999999999888899999999999988888889999999999999 87
Q ss_pred eeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCC
Q 008939 407 VMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTE 486 (548)
Q Consensus 407 ~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~ 486 (548)
..+++++.|+.|++||++.++.+..+ ..|..
T Consensus 190 --~~l~~~~~~~~i~i~d~~~~~~~~~~-----------------------------------------------~~~~~ 220 (289)
T cd00200 190 --EKLLSSSSDGTIKLWDLSTGKCLGTL-----------------------------------------------RGHEN 220 (289)
T ss_pred --CEEEEecCCCcEEEEECCCCceecch-----------------------------------------------hhcCC
Confidence 68888989999999999876554332 24677
Q ss_pred CeeEEEEeCCe--EEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 487 PLSGLIFTQES--VLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 487 ~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
.|.++.|+|+. +++++.||.|++|++..... ....+...+. ++++++++|+++...|.+
T Consensus 221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeE
Confidence 89999999963 66666699999999885442 2224555565 788999999998877543
No 43
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2e-29 Score=250.90 Aligned_cols=380 Identities=15% Similarity=0.177 Sum_probs=300.2
Q ss_pred cccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 122 GSLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 122 ~~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
..+.+.+|...|+.+.|+..|.++++++.| .|.|||+-.+. -...++.|++.++..-|... ...|++.+.|+.|
T Consensus 99 ~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~--Gl~rL~GHkd~iT~~~F~~~---~~~lvS~sKDs~i 173 (888)
T KOG0306|consen 99 ILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE--GLFRLRGHKDSITQALFLNG---DSFLVSVSKDSMI 173 (888)
T ss_pred eeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce--eeEEeecchHHHhHHhccCC---CeEEEEeccCceE
Confidence 356788999999999999999999999999 99999998744 78889999999999888875 6789999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC-----------
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS----------- 269 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~----------- 269 (548)
++||++++ .+..... .|...|+.+++.+ . +++++..|+.+++|++..+......
T Consensus 174 K~WdL~tq------hCf~Thv------d~r~Eiw~l~~~~--~-~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~ 238 (888)
T KOG0306|consen 174 KFWDLETQ------HCFETHV------DHRGEIWALVLDE--K-LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGT 238 (888)
T ss_pred EEEecccc------eeeeEEe------cccceEEEEEEec--c-eEEEEecCCceEEEEeecccccccccccceeeccce
Confidence 99999973 2222111 3899999999998 3 8999999999999999221100000
Q ss_pred ---------cccccc-cceeeeec--------------------------------------------------------
Q 008939 270 ---------FPVIKD-QTQFSVAH-------------------------------------------------------- 283 (548)
Q Consensus 270 ---------~~~~~~-~~~~~~~~-------------------------------------------------------- 283 (548)
.....+ ...|.+.+
T Consensus 239 ~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir 318 (888)
T KOG0306|consen 239 FIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR 318 (888)
T ss_pred eeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhee
Confidence 000000 00000000
Q ss_pred ------------CCCCC------------------CCC---------eeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 284 ------------PRYSK------------------SNP---------IARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 284 ------------~~~~~------------------~~~---------~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
..... ... -..+.+|...|.+++||.+...+++++ .+.++
T Consensus 319 ~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~Sik 397 (888)
T KOG0306|consen 319 TSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIK 397 (888)
T ss_pred chhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEE
Confidence 00000 000 133456889999999999987777775 56899
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCc
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
+|+..+.+++.++.. +.+.+..|.|.++++++|...|.+.+||+.....+.+.++|++.|+.++..| |+
T Consensus 398 iWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-------D~-- 466 (888)
T KOG0306|consen 398 IWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-------DN-- 466 (888)
T ss_pred EEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-------CC--
Confidence 999999999999875 4899999999999999999999999999999999999999999999999999 98
Q ss_pred cceeEEEEEEeCCCeEEEEECCCCeE-------------EeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceee
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLEMDEI-------------VVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRD 471 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d 471 (548)
..+++++.|.+|++||..--.. .+.++....+.++.++|++ ..+.++-++..+++|-
T Consensus 467 ----~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg------k~LaVsLLdnTVkVyf 536 (888)
T KOG0306|consen 467 ----KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG------KLLAVSLLDNTVKVYF 536 (888)
T ss_pred ----CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC------cEEEEEeccCeEEEEE
Confidence 7899999999999999752111 1334444667777888886 6678888899999999
Q ss_pred cCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC--ccccCCCCcEE--EecCCCCceEeeeccc
Q 008939 472 VPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA--ESQSSSSETVL--STSSKDKPLLSSKVVT 543 (548)
Q Consensus 472 ~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~--~~~~~~~~~v~--~~s~d~~~l~s~~~~g 543 (548)
+.+.+....+.||.-||.+|..+||. |+|||.|..|+||-+.-+. ...+.|...|+ .|-|+.....++++.+
T Consensus 537 lDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~ 614 (888)
T KOG0306|consen 537 LDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG 614 (888)
T ss_pred ecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcc
Confidence 99999999999999999999999985 9999999999999998776 45568888887 6779888888877664
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-30 Score=253.37 Aligned_cols=275 Identities=18% Similarity=0.249 Sum_probs=238.8
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
+..+|.++.|+|..+ .++++-.+|.|.||+.++ ...++.++..+-+|++..|-
T Consensus 12 rSdRVKsVd~HPteP-w~la~LynG~V~IWnyet--------------------------qtmVksfeV~~~PvRa~kfi 64 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEP-WILAALYNGDVQIWNYET--------------------------QTMVKSFEVSEVPVRAAKFI 64 (794)
T ss_pred cCCceeeeecCCCCc-eEEEeeecCeeEEEeccc--------------------------ceeeeeeeecccchhhheee
Confidence 688999999999999 899999999999999987 35677778888999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc-eeEEeccCCCCCeE
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVS 387 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V~ 387 (548)
+-.+++++|+.|..||||++.+++.+..+.+|.+.|+|++.+|...+++++++|-.|++||.+.. .+.++++||+..|.
T Consensus 65 aRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM 144 (794)
T KOG0276|consen 65 ARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM 144 (794)
T ss_pred eccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEE
Confidence 98999999999999999999999999999999999999999999999999999999999999874 78899999999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCCCceecCCCCccccCCeeeecccCCC
Q 008939 388 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 388 ~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
+|+|.|. |. +.+++++.|++|++|.+....+..+++.+ ..++++.+-+.+. ...+..|..|..
T Consensus 145 qv~fnPk------D~------ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd----kpylIsgaDD~t 208 (794)
T KOG0276|consen 145 QVAFNPK------DP------NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD----KPYLISGADDLT 208 (794)
T ss_pred EEEecCC------Cc------cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC----cceEEecCCCce
Confidence 9999993 44 68999999999999999999999999865 4567777766652 234577888999
Q ss_pred CceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcccc--CCCCcEEEec--CCCCceEeee
Q 008939 467 PSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQS--SSSETVLSTS--SKDKPLLSSK 540 (548)
Q Consensus 467 ~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~~--~~~~~v~~~s--~d~~~l~s~~ 540 (548)
+++||.++..+++++.||...|..+.|+|.. |+||++||++|||+-.+-..+.. -.-+.++++. ..++.++.|-
T Consensus 209 iKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 209 IKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred EEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence 9999999999999999999999999999985 99999999999999766553322 2346677665 6666677777
Q ss_pred cccccc
Q 008939 541 VVTSSY 546 (548)
Q Consensus 541 ~~g~~~ 546 (548)
..|+++
T Consensus 289 Deg~i~ 294 (794)
T KOG0276|consen 289 DEGSVT 294 (794)
T ss_pred cCCcEE
Confidence 666653
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-30 Score=261.44 Aligned_cols=273 Identities=16% Similarity=0.233 Sum_probs=226.7
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
....+..++|+|. .-.++++..+|.|++||.+-. ..+... ..|.++|..++|+|.++ +|++|+.
T Consensus 8 kSsRvKglsFHP~---rPwILtslHsG~IQlWDYRM~-----tli~rF-------deHdGpVRgv~FH~~qp-lFVSGGD 71 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPK---RPWILTSLHSGVIQLWDYRMG-----TLIDRF-------DEHDGPVRGVDFHPTQP-LFVSGGD 71 (1202)
T ss_pred ccccccceecCCC---CCEEEEeecCceeeeehhhhh-----hHHhhh-------hccCCccceeeecCCCC-eEEecCC
Confidence 3446667777777 557999999999999998762 111111 13899999999999999 9999999
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~ 331 (548)
|-.|+||+... ...+..+.+|-.-|..+.|++.-.+|++++.|.+|+||+..++
T Consensus 72 DykIkVWnYk~--------------------------rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr 125 (1202)
T KOG0292|consen 72 DYKIKVWNYKT--------------------------RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR 125 (1202)
T ss_pred ccEEEEEeccc--------------------------ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC
Confidence 99999999986 4567788899999999999999999999999999999999999
Q ss_pred eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC--------c---------------------eeEEeccCC
Q 008939 332 QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED--------R---------------------KVVAWGEGH 382 (548)
Q Consensus 332 ~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~--------~---------------------~~~~~~~~h 382 (548)
+++..+.+|...|.|..|+|...+++++|-|.+|+|||+.- + -..+.++||
T Consensus 126 ~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH 205 (1202)
T KOG0292|consen 126 KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH 205 (1202)
T ss_pred ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence 99999999999999999999999999999999999999841 0 123456799
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecc
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 462 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~ 462 (548)
+..|+-++|+| .- .+|+||+.|..|++|.+..-+
T Consensus 206 DRGVNwaAfhp-------Tl------pliVSG~DDRqVKlWrmnetK--------------------------------- 239 (1202)
T KOG0292|consen 206 DRGVNWAAFHP-------TL------PLIVSGADDRQVKLWRMNETK--------------------------------- 239 (1202)
T ss_pred ccccceEEecC-------Cc------ceEEecCCcceeeEEEecccc---------------------------------
Confidence 99999999999 44 699999999999999986532
Q ss_pred cCCCCceeecCCCCceEEeecCCCCeeEEEEeC--CeEEEEECCCeEEEEeCCCCCcccc-C-CCCcEE--EecCCCCce
Q 008939 463 LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ--ESVLTVCREGHIKIWMRPGVAESQS-S-SSETVL--STSSKDKPL 536 (548)
Q Consensus 463 ~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp--d~l~t~s~Dg~I~iW~~~~~~~~~~-~-~~~~v~--~~s~d~~~l 536 (548)
.|+ +.+.++|.+.|+++.|+| +.|++.++|++||+||+..+...+. . ..+..+ +..|..+++
T Consensus 240 ------aWE------vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLf 307 (1202)
T KOG0292|consen 240 ------AWE------VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLF 307 (1202)
T ss_pred ------cee------ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCccee
Confidence 122 334579999999999999 5799999999999999987763333 2 233333 667999999
Q ss_pred Eeeecccc
Q 008939 537 LSSKVVTS 544 (548)
Q Consensus 537 ~s~~~~g~ 544 (548)
+.|+..|-
T Consensus 308 AAgHDsGm 315 (1202)
T KOG0292|consen 308 AAGHDSGM 315 (1202)
T ss_pred eeecCCce
Confidence 99988864
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.2e-29 Score=259.43 Aligned_cols=270 Identities=21% Similarity=0.334 Sum_probs=224.4
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
...+.|+.|+++ +..|+.++.++.|++|++... +. ........|...|++++|+|++. ++++++.|
T Consensus 159 ~~sv~~~~fs~~---g~~l~~~~~~~~i~~~~~~~~-----~~-----~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D 224 (456)
T KOG0266|consen 159 CPSVTCVDFSPD---GRALAAASSDGLIRIWKLEGI-----KS-----NLLRELSGHTRGVSDVAFSPDGS-YLLSGSDD 224 (456)
T ss_pred cCceEEEEEcCC---CCeEEEccCCCcEEEeecccc-----cc-----hhhccccccccceeeeEECCCCc-EEEEecCC
Confidence 568899999999 888999999999999998441 10 01111134899999999999999 99999999
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
++|++||+... ...++.+.+|...|++++|+|+++++++|+.|++|+|||+++++
T Consensus 225 ~tiriwd~~~~-------------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 225 KTLRIWDLKDD-------------------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred ceEEEeeccCC-------------------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence 99999999442 35578889999999999999999999999999999999999999
Q ss_pred EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce--eEEeccCCCCC--eEEEEEecCCCCCCCCCCcccee
Q 008939 333 LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK--VVAWGEGHNSW--VSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 333 ~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~--~~~~~~~h~~~--V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
++..+.+|.+.|.+++|++++.+|++++.|+.|+|||+.++. ++..+.++... ++.+.|+| ++
T Consensus 280 ~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-------~~------ 346 (456)
T KOG0266|consen 280 CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-------NG------ 346 (456)
T ss_pred EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-------CC------
Confidence 999999999999999999999999999999999999999998 66778777665 99999999 99
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC-
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP- 487 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~- 487 (548)
.+|+++..|+.+++||+..+.++..+.. |...
T Consensus 347 ~~ll~~~~d~~~~~w~l~~~~~~~~~~~-----------------------------------------------~~~~~ 379 (456)
T KOG0266|consen 347 KYLLSASLDRTLKLWDLRSGKSVGTYTG-----------------------------------------------HSNLV 379 (456)
T ss_pred cEEEEecCCCeEEEEEccCCcceeeecc-----------------------------------------------cCCcc
Confidence 7999999999999999999887765543 3222
Q ss_pred --eeEEEEeCC--eEEEEECCCeEEEEeCCCCCc--cccCC-CCcEE--EecCCCCceEeeec
Q 008939 488 --LSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--SQSSS-SETVL--STSSKDKPLLSSKV 541 (548)
Q Consensus 488 --V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~--~~~~~-~~~v~--~~s~d~~~l~s~~~ 541 (548)
+.+..+++. .+++++.|+.|++|++.+... ....| ...+. ++.+...+++++..
T Consensus 380 ~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~ 442 (456)
T KOG0266|consen 380 RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSF 442 (456)
T ss_pred eeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCc
Confidence 223333443 499999999999999987553 33355 44444 77788888888864
No 47
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.7e-30 Score=224.67 Aligned_cols=277 Identities=16% Similarity=0.273 Sum_probs=219.4
Q ss_pred CceEEEecCCCCCCceEEEEE-------cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEE
Q 008939 175 NPVCHAFDQDAKDGHDLLIGL-------NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~-------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 247 (548)
.-..+.|+|-.. ++|+++. -.|.++|.++.. .+.+.....+. -.+.+.+++|++..++.++
T Consensus 10 ~GysvqfSPf~~--nrLavAt~q~yGl~G~G~L~ile~~~-----~~gi~e~~s~d-----~~D~LfdV~Wse~~e~~~~ 77 (311)
T KOG0277|consen 10 HGYSVQFSPFVE--NRLAVATAQHYGLAGNGRLFILEVTD-----PKGIQECQSYD-----TEDGLFDVAWSENHENQVI 77 (311)
T ss_pred ccceeEeccccc--chhheeehhhcccccCceEEEEecCC-----CCCeEEEEeee-----cccceeEeeecCCCcceEE
Confidence 346788888754 3455543 347799988752 12222222221 4678999999999998999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEE
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVF 326 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vw 326 (548)
+++.||.+++||+.. ..+|++.|+.|+..|.++.|++ +.+.+++++.|++|++|
T Consensus 78 ~a~GDGSLrl~d~~~-------------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 78 AASGDGSLRLFDLTM-------------------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred EEecCceEEEeccCC-------------------------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence 999999999999654 2578999999999999999998 67778888999999999
Q ss_pred eCCCCeEEEeeeecCCceEEEEEccC-CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCcc
Q 008939 327 DYSKEQLICGGKSYYGALLCCAWSMD-GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAE 405 (548)
Q Consensus 327 d~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~ 405 (548)
+....+-++++.+|...|...+|+|. .+++++++.|+.+++||++.......+..|...|.++.|+.+ +-
T Consensus 133 ~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky------~~--- 203 (311)
T KOG0277|consen 133 DPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY------NH--- 203 (311)
T ss_pred cCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeeccccc------CC---
Confidence 99999999999999999999999994 568999999999999999875444448889999999999863 44
Q ss_pred ceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCC
Q 008939 406 TVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHT 485 (548)
Q Consensus 406 ~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~ 485 (548)
+++++++.|+.|+.||+++-+ .|+..+.+|.
T Consensus 204 ---~vl~Tg~vd~~vr~wDir~~r----------------------------------------------~pl~eL~gh~ 234 (311)
T KOG0277|consen 204 ---NVLATGGVDNLVRGWDIRNLR----------------------------------------------TPLFELNGHG 234 (311)
T ss_pred ---cEEEecCCCceEEEEehhhcc----------------------------------------------ccceeecCCc
Confidence 799999999999999998632 3566777999
Q ss_pred CCeeEEEEeCC---eEEEEECCCeEEEEeCCCCC---ccccCCCCcEE--EecC-CCCceEeeecccccc
Q 008939 486 EPLSGLIFTQE---SVLTVCREGHIKIWMRPGVA---ESQSSSSETVL--STSS-KDKPLLSSKVVTSSY 546 (548)
Q Consensus 486 ~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~~~---~~~~~~~~~v~--~~s~-d~~~l~s~~~~g~~~ 546 (548)
-.|+.|.|+|. .|++++.|-++||||...+. +....|.+-+. .+|+ +..++|+....+.+|
T Consensus 235 ~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~ 304 (311)
T KOG0277|consen 235 LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLY 304 (311)
T ss_pred eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeeccccccee
Confidence 99999999996 39999999999999977544 33345666665 5563 455677666655443
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=5e-31 Score=240.55 Aligned_cols=256 Identities=18% Similarity=0.258 Sum_probs=216.5
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
....|+|+.+. ++ .+++|..|.+|+|||... ...+..+.+|++.|.|+.|.
T Consensus 196 ~skgVYClQYD--D~-kiVSGlrDnTikiWD~n~--------------------------~~c~~~L~GHtGSVLCLqyd 246 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DE-KIVSGLRDNTIKIWDKNS--------------------------LECLKILTGHTGSVLCLQYD 246 (499)
T ss_pred cCCceEEEEec--ch-hhhcccccCceEEecccc--------------------------HHHHHhhhcCCCcEEeeecc
Confidence 56789999985 33 799999999999999876 34567788999999999985
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce---eEEeccCCCCC
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK---VVAWGEGHNSW 385 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~---~~~~~~~h~~~ 385 (548)
.+.|++|+.|.+|+|||.++++++.++..|...|..+.|+ ..++++++.|..|.+||+.... +...+.||...
T Consensus 247 --~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 247 --ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred --ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 5699999999999999999999999999999999999997 3489999999999999998754 44567899999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC-CCCceecCCCCccccCCeeeecccC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL-GGSPTFSTGSQSAHWDNVCPVGTLQ 464 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~g~~~ 464 (548)
|+.+.|+. ++|++++.|.+|++|++.++++++.+..+.. +.++.+ .+..+..|+.|
T Consensus 323 VNvVdfd~---------------kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--------r~rlvVSGSSD 379 (499)
T KOG0281|consen 323 VNVVDFDD---------------KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--------RDRLVVSGSSD 379 (499)
T ss_pred eeeecccc---------------ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--------cCeEEEecCCC
Confidence 99999964 6999999999999999999999999876422 222221 24566889999
Q ss_pred CCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCCcc-----------ccCCCCcEEEecCCC
Q 008939 465 PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAES-----------QSSSSETVLSTSSKD 533 (548)
Q Consensus 465 ~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~~~-----------~~~~~~~v~~~s~d~ 533 (548)
..+++||+..+.++..++||++-|.++.|....|++|+.||+|++||+...... ...|...|..+-.|.
T Consensus 380 ntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~ 459 (499)
T KOG0281|consen 380 NTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE 459 (499)
T ss_pred ceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc
Confidence 999999999999999999999999999999999999999999999998776533 225666777666776
Q ss_pred CceEeee
Q 008939 534 KPLLSSK 540 (548)
Q Consensus 534 ~~l~s~~ 540 (548)
..|++++
T Consensus 460 fqIvsss 466 (499)
T KOG0281|consen 460 FQIISSS 466 (499)
T ss_pred eEEEecc
Confidence 6666653
No 49
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-29 Score=221.35 Aligned_cols=265 Identities=20% Similarity=0.340 Sum_probs=213.3
Q ss_pred CCeEEEEEccCCC-CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 150 GDAIFISDLNSQD-KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 150 ~d~v~vwd~~~~~-~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
+..+.|-++..+. ......+. ..+....++|++.. .+.++++.-||.+++||+.. +.+++.... .
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~--e~~~~~a~GDGSLrl~d~~~----~s~Pi~~~k-------E 102 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENH--ENQVIAASGDGSLRLFDLTM----PSKPIHKFK-------E 102 (311)
T ss_pred CceEEEEecCCCCCeEEEEeee-cccceeEeeecCCC--cceEEEEecCceEEEeccCC----CCcchhHHH-------h
Confidence 3488899986432 12233333 35688999999985 45899999999999999653 222332222 3
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
|+.+|.++.|++.....+++++.|++|++|+... .+.+..+.+|...|...+|+
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r--------------------------~~Sv~Tf~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR--------------------------PNSVQTFNGHNSCIYQAAFS 156 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCC--------------------------CcceEeecCCccEEEEEecC
Confidence 8999999999998877899999999999999875 36688899999999999999
Q ss_pred C-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCCc-eeEEeccCCCCC
Q 008939 309 T-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSW 385 (548)
Q Consensus 309 p-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~ 385 (548)
| .++++++++.|+.+++||++..-....+..|...|.|+.|+. +...|++|+.|+.|++||++.- .++..+.+|.-.
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A 236 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA 236 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence 9 788999999999999999985443344888999999999997 4567899999999999999984 578889999999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQP 465 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~ 465 (548)
|+.|+|+|. .. .+|++++.|-+++|||...+...
T Consensus 237 VRkvk~Sph------~~------~lLaSasYDmT~riw~~~~~ds~---------------------------------- 270 (311)
T KOG0277|consen 237 VRKVKFSPH------HA------SLLASASYDMTVRIWDPERQDSA---------------------------------- 270 (311)
T ss_pred EEEEecCcc------hh------hHhhhccccceEEecccccchhh----------------------------------
Confidence 999999992 22 58999999999999998754322
Q ss_pred CCceeecCCCCceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEeC
Q 008939 466 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMR 512 (548)
Q Consensus 466 ~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~ 512 (548)
+.+...|++-|..+.|++- .+++++.|+.++||+.
T Consensus 271 ------------~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 271 ------------IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ------------hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 1122358888999999873 5999999999999983
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3e-28 Score=269.44 Aligned_cols=284 Identities=18% Similarity=0.209 Sum_probs=222.3
Q ss_pred ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccc--ceeeeeeeccCCcccCcceEEEEEecCCCcEEE
Q 008939 170 HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK--KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 170 ~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 247 (548)
..|...+.+++|+|+ +.+|++|+.|+.|++||+......... ...... .+...+.+++|+|....+|+
T Consensus 480 ~~~~~~V~~i~fs~d---g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~~la 549 (793)
T PLN00181 480 LNSSNLVCAIGFDRD---GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-------ASRSKLSGICWNSYIKSQVA 549 (793)
T ss_pred cCCCCcEEEEEECCC---CCEEEEEeCCCEEEEEECCcccccccccccceEEe-------cccCceeeEEeccCCCCEEE
Confidence 336778999999998 889999999999999998642111000 000001 13567999999986544899
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEE
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVF 326 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vw 326 (548)
+++.||.|++||+.+ ...+..+..|.+.|++++|+| ++.+|++++.|+.|++|
T Consensus 550 s~~~Dg~v~lWd~~~--------------------------~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iW 603 (793)
T PLN00181 550 SSNFEGVVQVWDVAR--------------------------SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLW 603 (793)
T ss_pred EEeCCCeEEEEECCC--------------------------CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEE
Confidence 999999999999875 234667788999999999997 78999999999999999
Q ss_pred eCCCCeEEEeeeecCCceEEEEEc-cCCCEEEEEeCCCeEEEEECCCce-eEEeccCCCCCeEEEEEecCCCCCCCCCCc
Q 008939 327 DYSKEQLICGGKSYYGALLCCAWS-MDGKYILTGGEDDLVQVWSMEDRK-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 327 d~~~~~~~~~~~~~~~~v~~l~~s-pdg~~l~sgs~dg~I~vwd~~~~~-~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
|+++++.+..+..+ ..+.++.|+ +++.+|++|+.|+.|++||+++.+ .+..+.+|...|.++.|. ++
T Consensus 604 d~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--------~~-- 672 (793)
T PLN00181 604 SINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--------DS-- 672 (793)
T ss_pred ECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--------CC--
Confidence 99999888888754 679999995 578999999999999999998765 567788999999999996 44
Q ss_pred cceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecC
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH 484 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h 484 (548)
..|++++.|+.|++||++.+... ....++..+.+|
T Consensus 673 ----~~lvs~s~D~~ikiWd~~~~~~~-----------------------------------------~~~~~l~~~~gh 707 (793)
T PLN00181 673 ----STLVSSSTDNTLKLWDLSMSISG-----------------------------------------INETPLHSFMGH 707 (793)
T ss_pred ----CEEEEEECCCEEEEEeCCCCccc-----------------------------------------cCCcceEEEcCC
Confidence 47999999999999998753200 011345567789
Q ss_pred CCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCcc---------------ccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 485 TEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAES---------------QSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 485 ~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~---------------~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
...+..+.|+|+ .|++|+.|+.|++|+....... ...+...|. +|+|+++.|+++...|.+
T Consensus 708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 708 TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 999999999996 5999999999999996543210 012223344 788999999999887654
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-28 Score=214.00 Aligned_cols=254 Identities=15% Similarity=0.168 Sum_probs=214.8
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
...+.++|..+.|+.+|+|.++++.| +|++|+...+. .|++...|..++..++.+.+ ...+++|+.|..|++||
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~--liktYsghG~EVlD~~~s~D---nskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA--LIKTYSGHGHEVLDAALSSD---NSKFASCGGDKAVQVWD 87 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeecccccc--eeeeecCCCceeeecccccc---ccccccCCCCceEEEEE
Confidence 35678899999999999999998887 99999998866 99999999999999999888 67899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+.+ ++.+. ....|...|+.++|+.+.. ++++|+.|..+++||-+..
T Consensus 88 V~T-----Gkv~R-------r~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~--------------------- 133 (307)
T KOG0316|consen 88 VNT-----GKVDR-------RFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSR--------------------- 133 (307)
T ss_pred ccc-----Ceeee-------ecccccceeeEEEecCcce-EEEeccccceeEEEEcccC---------------------
Confidence 998 23222 1235999999999999988 9999999999999999863
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
..+|++.+..-...|.++... +..|++|+.||++|.||++.|++...+-+ .+|+|+.|++|++.+++++-|.+
T Consensus 134 ---s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~st 206 (307)
T KOG0316|consen 134 ---SFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDST 206 (307)
T ss_pred ---CCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccce
Confidence 246788887778899999875 56899999999999999999988766554 58999999999999999999999
Q ss_pred EEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 365 VQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
|++.|-++++.++.+++|...=..+..+- .+ .. ..+++|++||.|.+||+.....+..+..
T Consensus 207 lrLlDk~tGklL~sYkGhkn~eykldc~l----~q-sd------thV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 207 LRLLDKETGKLLKSYKGHKNMEYKLDCCL----NQ-SD------THVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred eeecccchhHHHHHhcccccceeeeeeee----cc-cc------eeEEeccCCceEEEEEeccceeeeeecc
Confidence 99999999999999999987555444322 00 11 5899999999999999998877655543
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-28 Score=249.38 Aligned_cols=249 Identities=16% Similarity=0.175 Sum_probs=219.3
Q ss_pred CCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecc
Q 008939 131 TSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQL 209 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~ 209 (548)
..+-.++|+|.-.+|+++-.. .|++||.+-+. .+..+..|...|..++|+|. +.++++|+.|-.|++|+..+
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~t--li~rFdeHdGpVRgv~FH~~---qplFVSGGDDykIkVWnYk~-- 82 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVDFHPT---QPLFVSGGDDYKIKVWNYKT-- 82 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhh--HHhhhhccCCccceeeecCC---CCeEEecCCccEEEEEeccc--
Confidence 344578999999999998876 99999999866 89999999999999999999 77999999999999999886
Q ss_pred cccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 210 QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
+++.... .+|-+-|..+.|++.-+ ++++++.|-+|+||+..+ +
T Consensus 83 ----rrclftL------~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqs--------------------------r 125 (1202)
T KOG0292|consen 83 ----RRCLFTL------LGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQS--------------------------R 125 (1202)
T ss_pred ----ceehhhh------ccccceeEEeeccCCCc-eEEEccCCCeEEEEeccC--------------------------C
Confidence 3333222 25899999999999999 999999999999999987 5
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC--------C-------------------e--EEEeeeec
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK--------E-------------------Q--LICGGKSY 340 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~--------~-------------------~--~~~~~~~~ 340 (548)
+.+..+.+|..-|+|..|+|...++++++-|.+|||||+.- + . ....+.+|
T Consensus 126 ~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH 205 (1202)
T KOG0292|consen 126 KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH 205 (1202)
T ss_pred ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence 78999999999999999999999999999999999999841 1 0 12346789
Q ss_pred CCceEEEEEccCCCEEEEEeCCCeEEEEECCCce--eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 341 YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK--VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 341 ~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
...|+-++|+|.-.+|++|++|+.|++|.+...+ .+.+.++|...|+++-|+| .. .+|+|.++|+
T Consensus 206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp-------~q------~lIlSnsEDk 272 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHP-------HQ------DLILSNSEDK 272 (1202)
T ss_pred ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecC-------cc------ceeEecCCCc
Confidence 9999999999999999999999999999998755 4677889999999999999 55 6999999999
Q ss_pred eEEEEECCCCeEEeeeec
Q 008939 419 RLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 419 ~i~lwd~~~~~~~~~~~~ 436 (548)
.|++||+.....+++++.
T Consensus 273 sirVwDm~kRt~v~tfrr 290 (1202)
T KOG0292|consen 273 SIRVWDMTKRTSVQTFRR 290 (1202)
T ss_pred cEEEEecccccceeeeec
Confidence 999999999999998876
No 53
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=6e-28 Score=243.17 Aligned_cols=362 Identities=17% Similarity=0.202 Sum_probs=273.3
Q ss_pred EEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeec
Q 008939 144 YIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYN 223 (548)
Q Consensus 144 ~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~ 223 (548)
+++......++||+++++. .+..+....+.|+++.-+|- -..+++|..+|+|.+++++. ++.+. ..+
T Consensus 175 IvvGs~~G~lql~Nvrt~K--~v~~f~~~~s~IT~ieqsPa---LDVVaiG~~~G~ViifNlK~-----dkil~-sFk-- 241 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGK--VVYTFQEFFSRITAIEQSPA---LDVVAIGLENGTVIIFNLKF-----DKILM-SFK-- 241 (910)
T ss_pred EEEeecCCcEEEEEeccCc--EEEEecccccceeEeccCCc---ceEEEEeccCceEEEEEccc-----CcEEE-EEE--
Confidence 3333444599999999954 99999988899999999998 67899999999999999987 33333 333
Q ss_pred cCCccc-CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc-cccceeeeecC-----CCCCCCCeeEe-
Q 008939 224 KDGSVN-NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI-KDQTQFSVAHP-----RYSKSNPIARW- 295 (548)
Q Consensus 224 ~~~~~~-~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~- 295 (548)
| .++|+.++|..||+-+|++|+..|.+.+||++............ .........++ ....++.++.|
T Consensus 242 -----~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 242 -----QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV 316 (910)
T ss_pred -----ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence 3 48999999999999889999999999999998633222222111 10011111100 01122333322
Q ss_pred --------------eecCCCeEEEEEC-CCCCEEEEEECCCeEEEEeCCCC-------e---------------------
Q 008939 296 --------------HICQGSINSIAFS-TDGTYLATVGRDGYLRVFDYSKE-------Q--------------------- 332 (548)
Q Consensus 296 --------------~~h~~~v~~~~~s-p~g~~l~s~~~dg~v~vwd~~~~-------~--------------------- 332 (548)
.+|..+..|+.|. .+|..+.+++.|++++.+++... +
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence 3588899999998 58889999999998888765310 0
Q ss_pred EEEeee-------------------------------------ec------CCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 008939 333 LICGGK-------------------------------------SY------YGALLCCAWSMDGKYILTGGEDDLVQVWS 369 (548)
Q Consensus 333 ~~~~~~-------------------------------------~~------~~~v~~l~~spdg~~l~sgs~dg~I~vwd 369 (548)
.+..+. .+ ...+++++.+++|++.+.|...|.|.+|+
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 000000 01 24578899999999999999999999999
Q ss_pred CCCceeEEec---cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceec
Q 008939 370 MEDRKVVAWG---EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFS 446 (548)
Q Consensus 370 ~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 446 (548)
+++|-....+ ..|..+|++++.+- -+ +.+++++.||.+++||+.+..++..++....+..+...
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~D~-------~n------~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~h 543 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAVDG-------TN------RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYH 543 (910)
T ss_pred cccCeeecccccCccccCceeEEEecC-------CC------ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeee
Confidence 9999888888 48999999999954 33 68999999999999999999988888776655555543
Q ss_pred CCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcccc---C
Q 008939 447 TGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQS---S 521 (548)
Q Consensus 447 ~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~~---~ 521 (548)
-.. ..+.+...+..+.++|..+.+.++.+.+|.+.|+++.|+||+ |++++.|++||+||+++...... +
T Consensus 544 r~s------~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd 617 (910)
T KOG1539|consen 544 RVS------DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD 617 (910)
T ss_pred ehh------hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence 332 333556667889999999999999999999999999999996 99999999999999999875433 3
Q ss_pred CCCcEEEecCCCCceEeeecc
Q 008939 522 SSETVLSTSSKDKPLLSSKVV 542 (548)
Q Consensus 522 ~~~~v~~~s~d~~~l~s~~~~ 542 (548)
....-+++||+|.+||+.+.+
T Consensus 618 ~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 618 SPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred CcceeeEECCCCCEEEEEEec
Confidence 333445899999999999888
No 54
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1.6e-28 Score=220.65 Aligned_cols=282 Identities=14% Similarity=0.166 Sum_probs=228.5
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
.|+..+..|+..|.+..|+|+ +.+|++|+.|..|.+|++...... ... .++|+++|..+.|.+++.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~---gs~~aSgG~Dr~I~LWnv~gdceN---~~~--------lkgHsgAVM~l~~~~d~s 103 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPD---GSCFASGGSDRAIVLWNVYGDCEN---FWV--------LKGHSGAVMELHGMRDGS 103 (338)
T ss_pred chhhhcCCCcceEEEEEECCC---CCeEeecCCcceEEEEeccccccc---eee--------eccccceeEeeeeccCCC
Confidence 467777889999999999998 889999999999999997652111 110 115999999999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCe
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGY 322 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~ 322 (548)
.+++++.|.+|+.||.+++ +.++.+++|...|+.+.-+. ...++.+++.|++
T Consensus 104 -~i~S~gtDk~v~~wD~~tG--------------------------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t 156 (338)
T KOG0265|consen 104 -HILSCGTDKTVRGWDAETG--------------------------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT 156 (338)
T ss_pred -EEEEecCCceEEEEecccc--------------------------eeeehhccccceeeecCccccCCeEEEecCCCce
Confidence 9999999999999999983 45777888989999988443 3457888999999
Q ss_pred EEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCC
Q 008939 323 LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDG 402 (548)
Q Consensus 323 v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg 402 (548)
+++||+++.+.+.++. ..-.++++.|..++..+.+|+-|+.|++||++.....+.+.||.+.|+.|..+| +|
T Consensus 157 ~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~-------~g 228 (338)
T KOG0265|consen 157 LKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR-------YG 228 (338)
T ss_pred EEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEecc-------CC
Confidence 9999999988887765 345699999999999999999999999999999999999999999999999999 88
Q ss_pred CccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee
Q 008939 403 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR 482 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~ 482 (548)
..+.+-+.|.++++||++--..- ..++..++
T Consensus 229 ------s~llsnsMd~tvrvwd~rp~~p~-------------------------------------------~R~v~if~ 259 (338)
T KOG0265|consen 229 ------SFLLSNSMDNTVRVWDVRPFAPS-------------------------------------------QRCVKIFQ 259 (338)
T ss_pred ------CccccccccceEEEEEecccCCC-------------------------------------------CceEEEee
Confidence 79999999999999998742211 11122233
Q ss_pred cC----CCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCC--ccccCCCCcEE--EecCCCCceEeeeccc
Q 008939 483 VH----TEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA--ESQSSSSETVL--STSSKDKPLLSSKVVT 543 (548)
Q Consensus 483 ~h----~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~--~~~~~~~~~v~--~~s~d~~~l~s~~~~g 543 (548)
+| +.......|+|+ .+..++.|..+.+||..... ....+|...|. .|.|....|.++...-
T Consensus 260 g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 260 GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred cchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCc
Confidence 32 234567789997 48899999999999977655 34557777776 7888888887776543
No 55
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=8.5e-29 Score=222.93 Aligned_cols=308 Identities=17% Similarity=0.261 Sum_probs=229.1
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc-ccceee----ee-eeccCCcccCcceEEEEE
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV-GKKLVG----AH-HYNKDGSVNNSRCTSVTW 238 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~-~~~~~~----~~-~~~~~~~~~~~~v~~l~~ 238 (548)
....+..|+..+.+.+|+|+ |.++++|+.|..|+|+|++.-+... -+.+.. .. ...+...-|.++|+++.|
T Consensus 104 Et~ylt~HK~~cR~aafs~D---G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPD---GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred ceEEEeecccceeeeeeCCC---CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence 45566779999999999999 9999999999999999998422111 000000 00 001111238899999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE
Q 008939 239 VPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG 318 (548)
Q Consensus 239 ~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~ 318 (548)
+|... +|++|+.|++|++||+.+.. ....+..+. ...+|.++.|+|.|.+|+.|.
T Consensus 181 HPre~-ILiS~srD~tvKlFDfsK~s-aKrA~K~~q-----------------------d~~~vrsiSfHPsGefllvgT 235 (430)
T KOG0640|consen 181 HPRET-ILISGSRDNTVKLFDFSKTS-AKRAFKVFQ-----------------------DTEPVRSISFHPSGEFLLVGT 235 (430)
T ss_pred cchhh-eEEeccCCCeEEEEecccHH-HHHHHHHhh-----------------------ccceeeeEeecCCCceEEEec
Confidence 99998 99999999999999998621 111111111 126799999999999999999
Q ss_pred CCCeEEEEeCCCCeEEEee---eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc-CCC-CCeEEEEEec
Q 008939 319 RDGYLRVFDYSKEQLICGG---KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHN-SWVSGVAFDS 393 (548)
Q Consensus 319 ~dg~v~vwd~~~~~~~~~~---~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-~h~-~~V~~v~~~p 393 (548)
.--.+++||+++-++...- ..|.+.|+++.+++.+++.++++.||.|++||--+++|+.++. .|. +.|.+..|..
T Consensus 236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk 315 (430)
T KOG0640|consen 236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK 315 (430)
T ss_pred CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc
Confidence 9999999999998876542 4588999999999999999999999999999999999998875 465 5789999998
Q ss_pred CCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCee-eecccCCCCceeec
Q 008939 394 YWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVC-PVGTLQPAPSMRDV 472 (548)
Q Consensus 394 ~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~g~~~~~~~~~d~ 472 (548)
|| +++++.|.|..+++|.+.+++++..+..-...+...+.......+....+ ..-.....+.-||.
T Consensus 316 -------n~------kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWda 382 (430)
T KOG0640|consen 316 -------NG------KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDA 382 (430)
T ss_pred -------CC------eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccc
Confidence 88 89999999999999999999999887653211111111111111111111 11122345677888
Q ss_pred CCCCceEEe-ecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCC
Q 008939 473 PKLSPLVAH-RVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 473 ~~~~~~~~~-~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~ 513 (548)
++...+..+ .+|.+.+..+.-+|. .++||+.|-.+|+|-..
T Consensus 383 Rtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 383 RTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred cchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 776655444 379999999999996 49999999999999754
No 56
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-28 Score=243.27 Aligned_cols=275 Identities=17% Similarity=0.280 Sum_probs=229.8
Q ss_pred EEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEE
Q 008939 178 CHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYV 257 (548)
Q Consensus 178 ~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~v 257 (548)
-+.|+. .+.|++|. ...|++|+..+ ..+..... .+...|+++.|+++|. +|++|..+|.|.|
T Consensus 182 lldWss----~n~laVal-g~~vylW~~~s------~~v~~l~~------~~~~~vtSv~ws~~G~-~LavG~~~g~v~i 243 (484)
T KOG0305|consen 182 LLDWSS----ANVLAVAL-GQSVYLWSASS------GSVTELCS------FGEELVTSVKWSPDGS-HLAVGTSDGTVQI 243 (484)
T ss_pred Hhhccc----CCeEEEEe-cceEEEEecCC------CceEEeEe------cCCCceEEEEECCCCC-EEEEeecCCeEEE
Confidence 345553 33455554 44899999765 12222222 1378899999999999 9999999999999
Q ss_pred EEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe
Q 008939 258 YEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG 336 (548)
Q Consensus 258 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~ 336 (548)
||.... +.+..+.+ |...|.+++|. ...+.+|+.|+.|.++|++..+....
T Consensus 244 wD~~~~--------------------------k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 244 WDVKEQ--------------------------KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS 295 (484)
T ss_pred Eehhhc--------------------------cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh
Confidence 998762 33445555 78999999998 56899999999999999998776555
Q ss_pred -eeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe
Q 008939 337 -GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415 (548)
Q Consensus 337 -~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~ 415 (548)
+.+|...|..+.|++|+.+||+|+.|+.+.|||....+++..+..|...|.+++|+|+ .. .+||+|+
T Consensus 296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~------q~------~lLAsGG 363 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPW------QS------GLLATGG 363 (484)
T ss_pred hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCC------cc------CceEEcC
Confidence 8899999999999999999999999999999999888899999999999999999994 22 3788876
Q ss_pred --CCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCee-eecccCCCCceeecCCCCceEEeecCCCCeeEEE
Q 008939 416 --QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVC-PVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLI 492 (548)
Q Consensus 416 --~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~ 492 (548)
.|++|++||..++..+..+....++..+.+++... ..+ ..|..+..+.+|+.++.+++..+.+|..+|..++
T Consensus 364 Gs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~k-----Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la 438 (484)
T KOG0305|consen 364 GSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYK-----ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLA 438 (484)
T ss_pred CCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCC-----EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEE
Confidence 59999999999999999999989999999987752 222 5667778999999999999999999999999999
Q ss_pred EeCCe--EEEEECCCeEEEEeCCCC
Q 008939 493 FTQES--VLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 493 fspd~--l~t~s~Dg~I~iW~~~~~ 515 (548)
++||+ |++|+.|.++++|++-..
T Consensus 439 ~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 439 LSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ECCCCCEEEEecccCcEEeccccCC
Confidence 99985 999999999999997653
No 57
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1.2e-28 Score=233.44 Aligned_cols=278 Identities=18% Similarity=0.279 Sum_probs=216.8
Q ss_pred EecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEE
Q 008939 169 IHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV 248 (548)
Q Consensus 169 ~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s 248 (548)
.-+|+..|..+.+-|.. ...+++.+..+.|+|||...+.... +........-...+|...-+.|+|++.....|++
T Consensus 120 ~i~h~gEVnRaRymPQn--p~iVAt~t~~~dv~Vfd~tk~~s~~--~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQN--PNIVATKTSSGDVYVFDYTKHPSKP--KASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred eccCCccchhhhhCCCC--CcEEEecCCCCCEEEEEeccCCCcc--cccccCCCceEEEeecccccccccccccceeEee
Confidence 34577888888888873 4577888899999999988742111 1110111111122477778899999999889999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEe
Q 008939 249 GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 249 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd 327 (548)
++.|+.|.+||+....... ....+...+++|+..|..++|++ +..+|++++.|+.+.|||
T Consensus 196 ~~~d~~i~lwdi~~~~~~~-------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD 256 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKED-------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWD 256 (422)
T ss_pred ccCCCcEEEEeccccccCC-------------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEE
Confidence 9999999999998643211 11356788899999999999999 677899999999999999
Q ss_pred CC--CCeEEEeeeecCCceEEEEEccCC-CEEEEEeCCCeEEEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCC
Q 008939 328 YS--KEQLICGGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGT 403 (548)
Q Consensus 328 ~~--~~~~~~~~~~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~ 403 (548)
++ +.++.....+|.+.|+|++|+|-+ .+||+|+.|++|++||+++- ++++.+.+|+..|.+|.|+| +-.
T Consensus 257 ~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP-------h~e 329 (422)
T KOG0264|consen 257 TRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP-------HNE 329 (422)
T ss_pred cCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC-------CCC
Confidence 99 566677788999999999999955 57889999999999999984 57899999999999999999 431
Q ss_pred ccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 404 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 404 ~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
..|++.+.|+.+.+||+..-...+.-+. ..+ ...++++.+.|
T Consensus 330 -----tvLASSg~D~rl~vWDls~ig~eq~~ed---------a~d------------------------gppEllF~HgG 371 (422)
T KOG0264|consen 330 -----TVLASSGTDRRLNVWDLSRIGEEQSPED---------AED------------------------GPPELLFIHGG 371 (422)
T ss_pred -----ceeEecccCCcEEEEeccccccccChhh---------hcc------------------------CCcceeEEecC
Confidence 6899999999999999976433222111 000 12346788899
Q ss_pred CCCCeeEEEEeCC---eEEEEECCCeEEEEeCCC
Q 008939 484 HTEPLSGLIFTQE---SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 484 h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~ 514 (548)
|...|..+.|+|. .|+++++|+.+.||.+..
T Consensus 372 H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 372 HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999999999997 399999999999999763
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.7e-27 Score=208.72 Aligned_cols=285 Identities=15% Similarity=0.234 Sum_probs=232.8
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.+|...+-.++|+.+|..++.++-| ++.||+++......-.....|.+.+-.++|+|.. ..++++++.|..|++|
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~--~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH--PDLFATASGDKTIRIW 92 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC--CcceEEecCCceEEEE
Confidence 345678889999999999999998877 9999999976422223334567788889999885 4589999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
|++. ++...... .+..-.-+.|+|+++ +++++..|..|.+.|.++... ....+
T Consensus 93 d~r~-----~k~~~~i~--------~~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~-~~~~~------------ 145 (313)
T KOG1407|consen 93 DIRS-----GKCTARIE--------TKGENINITWSPDGE-YIAVGNKDDRITFIDARTYKI-VNEEQ------------ 145 (313)
T ss_pred Eecc-----CcEEEEee--------ccCcceEEEEcCCCC-EEEEecCcccEEEEEecccce-eehhc------------
Confidence 9997 34333221 244456789999999 999999999999999986211 11110
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
....++.++|+.++.+++.....|.|.|..+..-+.+..+++|.....||.|+|+|++||+|+.|-
T Consensus 146 --------------~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA 211 (313)
T KOG1407|consen 146 --------------FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA 211 (313)
T ss_pred --------------ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccc
Confidence 114577899998888888777789999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCc
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSP 443 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~ 443 (548)
.+.+||++.--++..+..++-+|+.|.|+- || ++|+++++|..|-|=++++|..+..++
T Consensus 212 lvSLWD~~ELiC~R~isRldwpVRTlSFS~-------dg------~~lASaSEDh~IDIA~vetGd~~~eI~-------- 270 (313)
T KOG1407|consen 212 LVSLWDVDELICERCISRLDWPVRTLSFSH-------DG------RMLASASEDHFIDIAEVETGDRVWEIP-------- 270 (313)
T ss_pred eeeccChhHhhhheeeccccCceEEEEecc-------Cc------ceeeccCccceEEeEecccCCeEEEee--------
Confidence 999999999999999999999999999998 99 899999999999999999998776554
Q ss_pred eecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECC---------CeEEEEeC
Q 008939 444 TFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCRE---------GHIKIWMR 512 (548)
Q Consensus 444 ~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~D---------g~I~iW~~ 512 (548)
+.++...|+|+|.. |+-++.| |.++++-+
T Consensus 271 ----------------------------------------~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 271 ----------------------------------------CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred ----------------------------------------ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence 47788999999974 6766655 56666655
Q ss_pred C
Q 008939 513 P 513 (548)
Q Consensus 513 ~ 513 (548)
+
T Consensus 311 ~ 311 (313)
T KOG1407|consen 311 S 311 (313)
T ss_pred C
Confidence 4
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.5e-27 Score=245.20 Aligned_cols=280 Identities=19% Similarity=0.254 Sum_probs=238.7
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEE-EecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKS-IHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~-~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
.+...+++..|. +.++.++..+ +|++||...+. .+.. +..|...+.+++|... +..|++|+.|.++++||+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~--~i~~~l~GH~g~V~~l~~~~~---~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGY--LILTRLVGHFGGVWGLAFPSG---GDKLVSGSTDKTERVWDC 278 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccce--EEEeeccCCCCCceeEEEecC---CCEEEEEecCCcEEeEec
Confidence 356667777777 4566676666 89999999854 6666 8999999999999874 668999999999999998
Q ss_pred eecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
.+ ........ .|...|.++...+. ++++|+.|.+|++|++..
T Consensus 279 ~s------g~C~~~l~------gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n----------------------- 320 (537)
T KOG0274|consen 279 ST------GECTHSLQ------GHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTN----------------------- 320 (537)
T ss_pred CC------CcEEEEec------CCCceEEEEEccCc---eEeeccCCceEEEEeccC-----------------------
Confidence 76 22222222 48899999988654 788899999999999985
Q ss_pred CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeE
Q 008939 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I 365 (548)
...+..+.+|.++|+++..+ +.++++|+.|++|+|||+.+++++..+.+|..+|.++.+.+. +.+++|+.|+.|
T Consensus 321 ---~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 321 ---GACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTI 394 (537)
T ss_pred ---cceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccce
Confidence 34577778899999999997 779999999999999999999999999999999999988765 789999999999
Q ss_pred EEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCce
Q 008939 366 QVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT 444 (548)
Q Consensus 366 ~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 444 (548)
++||+++. +++..+.+|.+-|..+.+.. +.|++++.|+.|++||..+++++..++.
T Consensus 395 kvWdl~~~~~c~~tl~~h~~~v~~l~~~~---------------~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~-------- 451 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTSLVSSLLLRD---------------NFLVSSSADGTIKLWDAEEGECLRTLEG-------- 451 (537)
T ss_pred EeecCCchhhhhhhhcCCccccccccccc---------------ceeEeccccccEEEeecccCceeeeecc--------
Confidence 99999999 99999999999998888843 6899999999999999999999877655
Q ss_pred ecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCCccc
Q 008939 445 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQ 519 (548)
Q Consensus 445 ~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~~~~ 519 (548)
.|...|+.+++..+.+++++.||.+++||++.+....
T Consensus 452 --------------------------------------~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 452 --------------------------------------RHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred --------------------------------------CCcccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence 1567788888886779999999999999999877433
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.7e-28 Score=210.31 Aligned_cols=269 Identities=14% Similarity=0.171 Sum_probs=229.7
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
++++|..+.|+-+|+ +.++++.|.+|++|+... ...++.+.+|...|..++.+
T Consensus 16 ~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~r--------------------------g~liktYsghG~EVlD~~~s 68 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLR--------------------------GALIKTYSGHGHEVLDAALS 68 (307)
T ss_pred cccceEEEEEccCCC-EEEEcCCCceEEeecccc--------------------------cceeeeecCCCceeeecccc
Confidence 789999999999999 999999999999999875 35678888999999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc--eeEEeccCCCCCe
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR--KVVAWGEGHNSWV 386 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~--~~~~~~~~h~~~V 386 (548)
.|...|++++.|..+.+||+++|+.+..+++|.+.|+.++|+.+...+++|+-|..+++||.++. ++++.+......|
T Consensus 69 ~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V 148 (307)
T KOG0316|consen 69 SDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGV 148 (307)
T ss_pred ccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999875 6888888888999
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
.+|.... ..|++|+.||+++.||++.|+.....-. .+++++.|++++ +-...+.++..
T Consensus 149 ~Si~v~~---------------heIvaGS~DGtvRtydiR~G~l~sDy~g-~pit~vs~s~d~------nc~La~~l~st 206 (307)
T KOG0316|consen 149 SSIDVAE---------------HEIVAGSVDGTVRTYDIRKGTLSSDYFG-HPITSVSFSKDG------NCSLASSLDST 206 (307)
T ss_pred eEEEecc---------------cEEEeeccCCcEEEEEeecceeehhhcC-CcceeEEecCCC------CEEEEeeccce
Confidence 9999964 5899999999999999999998766655 889999999987 33467888999
Q ss_pred CceeecCCCCceEEeecCCCCeeEEE--EeC--CeEEEEECCCeEEEEeCCCCCc-cccCCCCcE--E--EecCCCCceE
Q 008939 467 PSMRDVPKLSPLVAHRVHTEPLSGLI--FTQ--ESVLTVCREGHIKIWMRPGVAE-SQSSSSETV--L--STSSKDKPLL 537 (548)
Q Consensus 467 ~~~~d~~~~~~~~~~~~h~~~V~~l~--fsp--d~l~t~s~Dg~I~iW~~~~~~~-~~~~~~~~v--~--~~s~d~~~l~ 537 (548)
+++.|..+++.+..+++|...=+.+. +.. ..+++|++||.|.+||+..... ....+...+ . +..|....++
T Consensus 207 lrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 207 LRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFI 286 (307)
T ss_pred eeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcccee
Confidence 99999999999999999987655554 333 2499999999999999876553 333444444 2 3447777777
Q ss_pred eeecccccc
Q 008939 538 SSKVVTSSY 546 (548)
Q Consensus 538 s~~~~g~~~ 546 (548)
++...+..+
T Consensus 287 ~A~~~~~~~ 295 (307)
T KOG0316|consen 287 TATGHGDLF 295 (307)
T ss_pred EecCCceec
Confidence 776655444
No 61
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=9.6e-28 Score=212.16 Aligned_cols=306 Identities=14% Similarity=0.179 Sum_probs=243.7
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
+..-+|..+++.+.|+.+|++|++++.| ...||=-..+. .+-+...|...|+|++.+.+ ...|++|+.|..+++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe--rlGty~GHtGavW~~Did~~---s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE--RLGTYDGHTGAVWCCDIDWD---SKHLITGSADQTAKL 78 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc--eeeeecCCCceEEEEEecCC---cceeeeccccceeEE
Confidence 4566899999999999999999999998 88999876644 89999999999999999998 668999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC-----CCcEEEEEcCCCCCCCCCcccccccc
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA-----DGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~-----dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
||+++ ++.+... . ...+|..+.|++++. +++.+.. .+.|.++|++.....
T Consensus 79 WDv~t-----Gk~la~~-k-------~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~----------- 133 (327)
T KOG0643|consen 79 WDVET-----GKQLATW-K-------TNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSD----------- 133 (327)
T ss_pred EEcCC-----CcEEEEe-e-------cCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhh-----------
Confidence 99998 4444332 2 478899999999998 5555433 367999999853210
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccCCCEE
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGKYI 356 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg~~l 356 (548)
.....|+..+..+...++.+-|.|-+++|++|..||.|.+||++++ +.+...+.|...|+.+++++|..++
T Consensus 134 --------~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~F 205 (327)
T KOG0643|consen 134 --------IDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYF 205 (327)
T ss_pred --------hcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceE
Confidence 1224667777788899999999999999999999999999999997 4566668899999999999999999
Q ss_pred EEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 357 ~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
++++.|.+-++||+++-++++++. -+.+|++.+++| .-. ..++-|+++.. |+.+-.-
T Consensus 206 iT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP-------~~d-----~VilgGGqeA~----dVTTT~~------ 262 (327)
T KOG0643|consen 206 ITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISP-------LLD-----HVILGGGQEAM----DVTTTST------ 262 (327)
T ss_pred EecccCccceeeeccceeeEEEee-ecccccceeccc-------ccc-----eEEecCCceee----eeeeecc------
Confidence 999999999999999999999988 778999999998 320 34555554421 2111000
Q ss_pred CCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 437 GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
+.| ....+++++...+.+..+++|-++|++|+|+|++ .++|++||.||+..+..
T Consensus 263 ----------------------r~G--KFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 263 ----------------------RAG--KFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ----------------------ccc--chhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 001 0122445555556777888999999999999996 89999999999987654
No 62
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=8e-28 Score=249.88 Aligned_cols=312 Identities=16% Similarity=0.205 Sum_probs=242.3
Q ss_pred CCCCceeEEeCCCCCEEEEec--CC-eEEEEEccCCC----------CCCeEEEecCCCCceEEEecCCCCCCceEEEEE
Q 008939 129 SSTSMTNTNFDGKGTYIIFNV--GD-AIFISDLNSQD----------KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL 195 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~--~d-~v~vwd~~~~~----------~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~ 195 (548)
+..+|+.+..+|+|..+++++ .| .++||+.+.-- .+.+..+.-|...+.|+.|+|+ |.+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d---G~~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD---GSYLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC---CCeEeecc
Confidence 455789999999999999988 56 77799865311 2456677778899999999999 88999999
Q ss_pred cCCcEEEEEeeec-----ccc-cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 008939 196 NSGDVYSVSLRQQ-----LQD-VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS 269 (548)
Q Consensus 196 ~dg~I~iwdl~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 269 (548)
.|+.|.||+.... ... .+.+.+..-+...-...|...|.+++|+|++. +|++++.|++|.+|+..+
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~t------- 160 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKT------- 160 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEcccc-------
Confidence 9999999998730 000 00000000000011224999999999999999 999999999999999987
Q ss_pred cccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecC------Cc
Q 008939 270 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY------GA 343 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~------~~ 343 (548)
...+.++++|++.|..+.|.|-|+|||+-+.|++|+||++.+..+.+.+..+. ..
T Consensus 161 -------------------F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~ 221 (942)
T KOG0973|consen 161 -------------------FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTF 221 (942)
T ss_pred -------------------ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcce
Confidence 35688899999999999999999999999999999999987766666655443 35
Q ss_pred eEEEEEccCCCEEEEEeC----CCeEEEEECCCceeEEeccCCCCCeEEEEEecC-CCCCCCCCCccc---eeEEEEEEe
Q 008939 344 LLCCAWSMDGKYILTGGE----DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSY-WSQPNSDGTAET---VMYRFGSVG 415 (548)
Q Consensus 344 v~~l~~spdg~~l~sgs~----dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~-~~~~~~dg~~~~---~~~~l~s~~ 415 (548)
++.+.|||||++|++... -..+.|.+-.+.+.-..|-||.+++.+++|+|. +..++.+|.... ....+++|+
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 788999999999998542 347899988888888899999999999999997 344444442211 123788999
Q ss_pred CCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeC
Q 008939 416 QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ 495 (548)
Q Consensus 416 ~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp 495 (548)
+|++|.||.....+++..+.. .....|.+|.|+|
T Consensus 302 qDrSlSVW~T~~~RPl~vi~~----------------------------------------------lf~~SI~DmsWsp 335 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFVIHN----------------------------------------------LFNKSIVDMSWSP 335 (942)
T ss_pred CCccEEEEecCCCCchhhhhh----------------------------------------------hhcCceeeeeEcC
Confidence 999999999866555433221 2357899999999
Q ss_pred Ce--EEEEECCCeEEEEeCCCCC
Q 008939 496 ES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 496 d~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
|+ |+.+|.||+|.+..+...+
T Consensus 336 dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 336 DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCCeEEEEecCCeEEEEEcchHH
Confidence 96 9999999999999987654
No 63
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=5.7e-28 Score=231.15 Aligned_cols=306 Identities=14% Similarity=0.185 Sum_probs=225.1
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCC--CCeEEEe-cCCCCceEEEecCCCCCCceEEEEEcCC
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK--DPIKSIH-FSNSNPVCHAFDQDAKDGHDLLIGLNSG 198 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~--~~i~~~~-~~~~~~~~~~~~p~~~~~~~l~~g~~dg 198 (548)
.+-+.+|...|..++++|.|.++++++-| .|++||++.... +..+.+. .....+..+.|++. +..|++.+..-
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T---g~~iLvvsg~a 236 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT---GDQILVVSGSA 236 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC---CCeEEEEecCc
Confidence 56788899999999999999999999999 999999987441 1122221 12347899999998 78899999999
Q ss_pred cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccce
Q 008939 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
+.+|+|-.....-.--+--+.+.-...-++|...++|.+|+|.....|++++.||++++||++........+.+...
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~--- 313 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA--- 313 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC---
Confidence 99999966421100000000011111234589999999999999889999999999999999863322222211110
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe---EEEeeeecCC--ceEEEEEccCC
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ---LICGGKSYYG--ALLCCAWSMDG 353 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~---~~~~~~~~~~--~v~~l~~spdg 353 (548)
.+..-+++.++|++||++||+|..||.|.+|+..... ..+.-.+|.. .|+||.||+||
T Consensus 314 -----------------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 314 -----------------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred -----------------CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 1123578899999999999999999999999985432 2334467776 89999999999
Q ss_pred CEEEEEeCCCeEEEEECCCc-eeEEeccCC--CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC------CCeEEEEE
Q 008939 354 KYILTGGEDDLVQVWSMEDR-KVVAWGEGH--NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ------DTRLLLWD 424 (548)
Q Consensus 354 ~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h--~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~------Dg~i~lwd 424 (548)
++|++-+.|+.+++||+++. +++....+- .-+-+.++|+| |. .+|++|.. .+.+.+||
T Consensus 377 ~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-------d~------kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 377 NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-------DD------KLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-------Cc------eEEEecccccCCCCCceEEEEe
Confidence 99999999999999999985 455555443 23557889999 87 78888753 45677777
Q ss_pred CCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEE
Q 008939 425 LEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVC 502 (548)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s 502 (548)
..+-+.+..+.. ....|..+.|+|. .|+.++
T Consensus 444 ~~t~d~v~ki~i-----------------------------------------------~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 444 RMTLDTVYKIDI-----------------------------------------------STASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred ccceeeEEEecC-----------------------------------------------CCceEEEEeecchhhheeeec
Confidence 766555544432 3567889999995 599999
Q ss_pred CCCeEEEEe
Q 008939 503 REGHIKIWM 511 (548)
Q Consensus 503 ~Dg~I~iW~ 511 (548)
.||.++++=
T Consensus 477 gdG~~~vyY 485 (641)
T KOG0772|consen 477 GDGTAHVYY 485 (641)
T ss_pred CCCceEEEE
Confidence 999999875
No 64
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=2.4e-28 Score=213.90 Aligned_cols=288 Identities=20% Similarity=0.242 Sum_probs=242.3
Q ss_pred EEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEE
Q 008939 168 SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 247 (548)
....|...+..++|+|-.++|-.|++++.||.-.+-+=++ +. .+. ...+|++.|.......+.. ..+
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t-----gd-wig------tfeghkgavw~~~l~~na~-~aa 75 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT-----GD-WIG------TFEGHKGAVWSATLNKNAT-RAA 75 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC-----CC-cEE------eeeccCcceeeeecCchhh-hhh
Confidence 4556777889999999888899999999998865443322 22 222 2235999999999988876 788
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd 327 (548)
++..|=+-+|||.-+ +.....+ .|+.-|..++|+.|.++|++|+.+..+||||
T Consensus 76 saaadftakvw~a~t-gdelhsf--------------------------~hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVT-GDELHSF--------------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred hhcccchhhhhhhhh-hhhhhhh--------------------------hhhheeeeEEecccchhhhccchHHHhhhhh
Confidence 899999999999876 3222222 2456799999999999999999999999999
Q ss_pred CCCCe-EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccc
Q 008939 328 YSKEQ-LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAET 406 (548)
Q Consensus 328 ~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~ 406 (548)
++..+ ....+.+|.+.|..+.|....+.|++...|+.||+||.+++..++.++ -..+|+++.+++ ||
T Consensus 129 ln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~-------dG---- 196 (334)
T KOG0278|consen 129 LNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQ-------DG---- 196 (334)
T ss_pred ccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeecc-------CC----
Confidence 98654 456788999999999999999999999999999999999999999998 778899999999 99
Q ss_pred eeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEe-ecCC
Q 008939 407 VMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH-RVHT 485 (548)
Q Consensus 407 ~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~-~~h~ 485 (548)
.+++....+.|++||..+-.++..++.+..+.+....|.. ..+..|..+..++.+|..+.+.+..+ ++|-
T Consensus 197 ---~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k------~~fVaGged~~~~kfDy~TgeEi~~~nkgh~ 267 (334)
T KOG0278|consen 197 ---RILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK------EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHF 267 (334)
T ss_pred ---CEEEEecCceeEEeccccccceeeccCccccccccccCCC------ceEEecCcceEEEEEeccCCceeeecccCCC
Confidence 6778888899999999999999999887778877777765 55678888999999999999999996 8999
Q ss_pred CCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 486 EPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 486 ~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
++|.+|.|+||+ .++|++||+||||.....+
T Consensus 268 gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 268 GPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 999999999986 7899999999999975544
No 65
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-25 Score=203.67 Aligned_cols=280 Identities=17% Similarity=0.221 Sum_probs=224.9
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc--CCcEEEEEe
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN--SGDVYSVSL 205 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~--dg~I~iwdl 205 (548)
....|.++.|+.+|.++++++.| .++|||..++. .++.+.-.+-.+..+.|... .+.++.++. |.+|+..++
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~--~~~ti~skkyG~~~~~Fth~---~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK--QVKTINSKKYGVDLACFTHH---SNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc--eeeEeecccccccEEEEecC---CceEEEccCCCCCceEEEEe
Confidence 35678899999999999997776 99999999966 88888888778888888877 556777776 778999998
Q ss_pred eecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
.. .+.+.. ..+|...|+.|+.+|-++ .|++++.|++|++||++...
T Consensus 88 ~d------NkylRY------F~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~--------------------- 133 (311)
T KOG1446|consen 88 HD------NKYLRY------FPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKK--------------------- 133 (311)
T ss_pred ec------CceEEE------cCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCC---------------------
Confidence 86 333332 336999999999999998 99999999999999999521
Q ss_pred CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC--eEEEee--e-ecCCceEEEEEccCCCEEEEEe
Q 008939 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE--QLICGG--K-SYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~--~~~~~~--~-~~~~~v~~l~~spdg~~l~sgs 360 (548)
....+.. ..-..++|+|+|-++|++.....|++||++.- .+..++ . ........+.|||||++|+.+.
T Consensus 134 -----cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT 206 (311)
T KOG1446|consen 134 -----CQGLLNL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST 206 (311)
T ss_pred -----CceEEec--CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe
Confidence 1111111 23345789999999999988889999999853 222222 2 3456789999999999999999
Q ss_pred CCCeEEEEECCCceeEEeccCCCCCe---EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 361 EDDLVQVWSMEDRKVVAWGEGHNSWV---SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~~h~~~V---~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
..+.+++.|--+|..+..+.++...- -...|.| || +.+++++.||+|.+|+++++..+..++.
T Consensus 207 ~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-------ds------~Fvl~gs~dg~i~vw~~~tg~~v~~~~~- 272 (311)
T KOG1446|consen 207 NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP-------DS------KFVLSGSDDGTIHVWNLETGKKVAVLRG- 272 (311)
T ss_pred CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC-------CC------cEEEEecCCCcEEEEEcCCCcEeeEecC-
Confidence 99999999999999988888765432 4678899 99 7999999999999999999988766554
Q ss_pred CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCC
Q 008939 438 PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRP 513 (548)
Q Consensus 438 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~ 513 (548)
.+..++.++.|.|.+..-++.|..+-+|-..
T Consensus 273 ---------------------------------------------~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 273 ---------------------------------------------PNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred ---------------------------------------------CCCCCccccccCCceeeeeecCceEEEEecc
Confidence 2577889999999987777788899999654
No 66
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=4.5e-26 Score=234.06 Aligned_cols=220 Identities=15% Similarity=0.205 Sum_probs=172.4
Q ss_pred EEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc--ccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 168 SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ--DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
.+..|...|.+++|+|. ++.+|++|+.||.|++||+..... .....+. ....|...|.+++|+|++.++
T Consensus 70 ~l~GH~~~V~~v~fsP~--d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~-------~L~gH~~~V~~l~f~P~~~~i 140 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPF--DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIV-------HLQGHTKKVGIVSFHPSAMNV 140 (493)
T ss_pred eEeCCCCCEEEEEEcCC--CCCEEEEEeCCCEEEEEecCCCccccccCcceE-------EecCCCCcEEEEEeCcCCCCE
Confidence 35678889999999993 167899999999999999975210 0001111 112488999999999987559
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 325 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~v 325 (548)
|++++.|+.|+|||+... ..+..+..|...|.+++|+|++++|++++.|+.|++
T Consensus 141 LaSgs~DgtVrIWDl~tg--------------------------~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrI 194 (493)
T PTZ00421 141 LASAGADMVVNVWDVERG--------------------------KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194 (493)
T ss_pred EEEEeCCCEEEEEECCCC--------------------------eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEE
Confidence 999999999999999862 345567778899999999999999999999999999
Q ss_pred EeCCCCeEEEeeeecCCc-eEEEEEccCCCEEEEEe----CCCeEEEEECCCce-eEEeccCC-CCCeEEEEEecCCCCC
Q 008939 326 FDYSKEQLICGGKSYYGA-LLCCAWSMDGKYILTGG----EDDLVQVWSMEDRK-VVAWGEGH-NSWVSGVAFDSYWSQP 398 (548)
Q Consensus 326 wd~~~~~~~~~~~~~~~~-v~~l~~spdg~~l~sgs----~dg~I~vwd~~~~~-~~~~~~~h-~~~V~~v~~~p~~~~~ 398 (548)
||+++++.+..+.+|.+. +..+.|.+++..|++++ .|+.|++||+++.. ++.....+ ...+....|++
T Consensus 195 wD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~----- 269 (493)
T PTZ00421 195 IDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE----- 269 (493)
T ss_pred EECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC-----
Confidence 999999999888888764 45678999888777654 47899999998754 44444333 34566677888
Q ss_pred CCCCCccceeEEEEEEe-CCCeEEEEECCCCeEEeeee
Q 008939 399 NSDGTAETVMYRFGSVG-QDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 399 ~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~~~~~~~~~~ 435 (548)
|+ .+|++++ .|+.|++||+..++.+....
T Consensus 270 --d~------~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 270 --DT------NLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred --CC------CEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 88 6777777 59999999999988766543
No 67
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2e-28 Score=221.68 Aligned_cols=291 Identities=16% Similarity=0.238 Sum_probs=234.6
Q ss_pred eEEEec-CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeecc--CCcccCcceEEEEEecCC
Q 008939 166 IKSIHF-SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNK--DGSVNNSRCTSVTWVPGG 242 (548)
Q Consensus 166 i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~~p~~ 242 (548)
.+.+.| .++.+-|..|+|+ +++|++|+.||-|.+|+.-+.. +.....+.. ...-+..+|.|+.|+.|.
T Consensus 205 ~r~IKFg~KSh~EcA~FSPD---gqyLvsgSvDGFiEVWny~~GK------lrKDLkYQAqd~fMMmd~aVlci~FSRDs 275 (508)
T KOG0275|consen 205 ARSIKFGQKSHVECARFSPD---GQYLVSGSVDGFIEVWNYTTGK------LRKDLKYQAQDNFMMMDDAVLCISFSRDS 275 (508)
T ss_pred hhheecccccchhheeeCCC---CceEeeccccceeeeehhccch------hhhhhhhhhhcceeecccceEEEeecccH
Confidence 445555 4568899999999 9999999999999999987621 111111111 112368899999999999
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee-ecCCCeEEEEECCCCCEEEEEECCC
Q 008939 243 DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGRDG 321 (548)
Q Consensus 243 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg 321 (548)
+ .|++|+.||.|++|.+.++ ..+++|+ .|...|+|+.|+.|+..+++++.|.
T Consensus 276 E-MlAsGsqDGkIKvWri~tG--------------------------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~ 328 (508)
T KOG0275|consen 276 E-MLASGSQDGKIKVWRIETG--------------------------QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQ 328 (508)
T ss_pred H-HhhccCcCCcEEEEEEecc--------------------------hHHHHhhhhhccCeeEEEEccCcchhhcccccc
Confidence 9 9999999999999999973 2344444 7889999999999999999999999
Q ss_pred eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC--CCCCeEEEEEecCCCCCC
Q 008939 322 YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPN 399 (548)
Q Consensus 322 ~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~ 399 (548)
++|+.-+..|+++..+++|...|+...|.+||..+++++.||+|++|+..+.+++.+++. .+.+|..+..-|
T Consensus 329 tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~P------ 402 (508)
T KOG0275|consen 329 TVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLP------ 402 (508)
T ss_pred eEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcC------
Confidence 999999999999999999999999999999999999999999999999999999998873 556888888877
Q ss_pred CCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC-CCCC---ceecCCCCccccCCeeeecccCCCCceeecCCC
Q 008939 400 SDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP-LGGS---PTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL 475 (548)
Q Consensus 400 ~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~ 475 (548)
... ..++.|...++|.|-++. |+.++.+..+. ..+. .+.++.+ ..+..-..|..++.+.+..+
T Consensus 403 -Knp-----eh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG------ewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 403 -KNP-----EHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKG------EWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred -CCC-----ceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCC------cEEEEEccCcEEEEEEeecC
Confidence 221 478889899999999985 67777765432 2222 2334443 23334445677788888888
Q ss_pred CceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEe
Q 008939 476 SPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWM 511 (548)
Q Consensus 476 ~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~ 511 (548)
..-..+..|+..|-.++-+|. .|++-++||.+++|.
T Consensus 470 ~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 470 KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 889999999999999999996 489999999999995
No 68
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.2e-26 Score=229.66 Aligned_cols=336 Identities=15% Similarity=0.208 Sum_probs=253.0
Q ss_pred eeEEeCCCCCEEEEecCC-eEEEEEccCCCC-CCeEEEecCCCCceEEEecC-CCC-------CCceEEEEEcCCcEEEE
Q 008939 134 TNTNFDGKGTYIIFNVGD-AIFISDLNSQDK-DPIKSIHFSNSNPVCHAFDQ-DAK-------DGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~-~~i~~~~~~~~~~~~~~~~p-~~~-------~~~~l~~g~~dg~I~iw 203 (548)
..+.|++....+.+-.+| .++|||++...+ .....+-+|...|+.+.--| +-. -...+++++.|++|++|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 468999998888887777 999999997542 34566677887777775555 111 12358999999999999
Q ss_pred Eeeeccccc--ccceeee-----------e---------eeccCC---cccCcceEEEEEecCCCcEEEEEeCCCcEEEE
Q 008939 204 SLRQQLQDV--GKKLVGA-----------H---------HYNKDG---SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVY 258 (548)
Q Consensus 204 dl~~~~~~~--~~~~~~~-----------~---------~~~~~~---~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vw 258 (548)
|++.-.... .+.+... . .|.+.. ......+.+++.+|+++ .|++|..-|+++||
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-hLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-HLASGDRGGNLRVY 486 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-eecccCccCceEEE
Confidence 997611100 0000000 0 011100 01456899999999999 99999999999999
Q ss_pred EcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC---CCCEEEEEECCCeEEEEeCCC-CeEE
Q 008939 259 EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST---DGTYLATVGRDGYLRVFDYSK-EQLI 334 (548)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp---~g~~l~s~~~dg~v~vwd~~~-~~~~ 334 (548)
++.. .........|+..|.|+.|+. ..++||+++.|..|.|||... ..++
T Consensus 487 ~Lq~--------------------------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~ 540 (1080)
T KOG1408|consen 487 DLQE--------------------------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV 540 (1080)
T ss_pred Eehh--------------------------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchh
Confidence 9975 234556678999999999985 357899999999999999964 3567
Q ss_pred EeeeecCCceEEEEEccCC--CEEEEEeCCCeEEEEECCCceeEEeccCC-----CCCeEEEEEecCCCCCCCCCCccce
Q 008939 335 CGGKSYYGALLCCAWSMDG--KYILTGGEDDLVQVWSMEDRKVVAWGEGH-----NSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 335 ~~~~~~~~~v~~l~~spdg--~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-----~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
.++.+|...|+++.|.-.| ..+++++.|..|.+--.+.......+..| ...++.|+..| ..
T Consensus 541 qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-------~~----- 608 (1080)
T KOG1408|consen 541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-------TS----- 608 (1080)
T ss_pred hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-------Cc-----
Confidence 8899999999999998877 67899999988765433321111122212 35678999988 65
Q ss_pred eEEEEEEeCCCeEEEEECCCCeEEeeeecCCCC-CC---ceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 408 MYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG-GS---PTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
.+++++++|..|+|||+..++....++..... +. +...|.+ .++.....+..+.++|...++++..+.|
T Consensus 609 -k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg------iY~atScsdktl~~~Df~sgEcvA~m~G 681 (1080)
T KOG1408|consen 609 -KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG------IYLATSCSDKTLCFVDFVSGECVAQMTG 681 (1080)
T ss_pred -ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc------cEEEEeecCCceEEEEeccchhhhhhcC
Confidence 69999999999999999999999999864322 22 2223333 4567777889999999999999999999
Q ss_pred CCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCC
Q 008939 484 HTEPLSGLIFTQES--VLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 484 h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~ 515 (548)
|.+.|+.|.|.+|+ |++++.||+|.||.++..
T Consensus 682 HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 682 HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred cchheeeeeecccchhheeecCCceEEEEECchh
Confidence 99999999999996 999999999999998764
No 69
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.5e-25 Score=192.14 Aligned_cols=298 Identities=14% Similarity=0.241 Sum_probs=229.8
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccC------CC---CCC-e---EEEecCCCCceEEEecCCCCCC
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNS------QD---KDP-I---KSIHFSNSNPVCHAFDQDAKDG 188 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~------~~---~~~-i---~~~~~~~~~~~~~~~~p~~~~~ 188 (548)
.+..-.....|..++|.|.|.+.+++++. +++|..... .+ +.| . +.-+.|...+.|.+|+|. |
T Consensus 25 ~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~---g 101 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC---G 101 (350)
T ss_pred EEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc---c
Confidence 44455567788999999999999998876 888765432 21 112 1 222347789999999999 8
Q ss_pred ceEEEEEcCCcEEEEEeeeccccc-ccceeeeeeeccCCcccCcceEEEEEecCCC---cEEEEEe-CCCcEEEEEcCCC
Q 008939 189 HDLLIGLNSGDVYSVSLRQQLQDV-GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD---GAFVVGH-ADGNLYVYEKSKD 263 (548)
Q Consensus 189 ~~l~~g~~dg~I~iwdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~---~~l~s~~-~dg~v~vwd~~~~ 263 (548)
.+|++|+.|..|++.-+.....+. +..+. ...|.+.|.+++|..+.+ .+|++++ .|.+|++-|-..
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle--------~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~- 172 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLE--------FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR- 172 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCccee--------eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC-
Confidence 899999999999988766521111 11111 123889999999975432 2666654 455666655543
Q ss_pred CCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee--c-
Q 008939 264 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--Y- 340 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~- 340 (548)
..+.+.+.+|++-|.++ ++=++-++++|+.|.+||+||++-..++.++.. |
T Consensus 173 -------------------------g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~ 226 (350)
T KOG0641|consen 173 -------------------------GQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD 226 (350)
T ss_pred -------------------------CCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccC
Confidence 35678888999999887 344678999999999999999998877766532 2
Q ss_pred ----CCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC
Q 008939 341 ----YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416 (548)
Q Consensus 341 ----~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~ 416 (548)
...|.+++..|.|++|++|-.|....+||++.++.++.+..|...|.++.|+| .. +++++++.
T Consensus 227 ~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp-------~a------~yllt~sy 293 (350)
T KOG0641|consen 227 GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP-------GA------HYLLTCSY 293 (350)
T ss_pred CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC-------Cc------eEEEEecc
Confidence 25789999999999999999999999999999999999999999999999999 66 89999999
Q ss_pred CCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC
Q 008939 417 DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE 496 (548)
Q Consensus 417 Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd 496 (548)
|..|++-|+...- ....+++....|.+.+..+.|+|.
T Consensus 294 d~~ikltdlqgdl-------------------------------------------a~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 294 DMKIKLTDLQGDL-------------------------------------------AHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred cceEEEeecccch-------------------------------------------hhcCceEEEEeccCceEEEEecCc
Confidence 9999999986421 122355566679999999999996
Q ss_pred --eEEEEECCCeEEEEeCCC
Q 008939 497 --SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 497 --~l~t~s~Dg~I~iW~~~~ 514 (548)
.+++.+.|.++.+|.+++
T Consensus 331 d~sfisssadkt~tlwa~~~ 350 (350)
T KOG0641|consen 331 DFSFISSSADKTATLWALNG 350 (350)
T ss_pred cceeeeccCcceEEEeccCC
Confidence 389999999999998763
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.1e-27 Score=222.91 Aligned_cols=271 Identities=17% Similarity=0.214 Sum_probs=216.3
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
..+.|..++|+|..+. .+++.++ -.+.||+... ....+.+. -.+..|+++.|..||. +|++|..
T Consensus 25 e~~~vssl~fsp~~P~--d~aVt~S-~rvqly~~~~--~~~~k~~s----------rFk~~v~s~~fR~DG~-LlaaGD~ 88 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPY--DFAVTSS-VRVQLYSSVT--RSVRKTFS----------RFKDVVYSVDFRSDGR-LLAAGDE 88 (487)
T ss_pred ccCcceeEecCCCCCC--ceEEecc-cEEEEEecch--hhhhhhHH----------hhccceeEEEeecCCe-EEEccCC
Confidence 3467899999997542 3444443 4688888765 12222221 1477899999999999 9999999
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.|.|+|||+.+ ...++.++.|+.+|+.+.|+| ++..|++|+.|+.+++||+.+
T Consensus 89 sG~V~vfD~k~--------------------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 89 SGHVKVFDMKS--------------------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred cCcEEEecccc--------------------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 99999999654 345677889999999999999 567888999999999999999
Q ss_pred CeEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCcccee
Q 008939 331 EQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
......+.+|+++|.|.+|+|-.. .+++|+.||.|++||++.. ..+.++. |..+|..+.|-| .|
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lp-------sg------ 208 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALP-------SG------ 208 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcC-------CC------
Confidence 988778999999999999999654 7899999999999999987 6677776 999999999999 87
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCe
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPL 488 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V 488 (548)
.+|++++. ..|++||+.+|..+.. .+..|...|
T Consensus 209 s~iasAgG-n~vkVWDl~~G~qll~----------------------------------------------~~~~H~KtV 241 (487)
T KOG0310|consen 209 SLIASAGG-NSVKVWDLTTGGQLLT----------------------------------------------SMFNHNKTV 241 (487)
T ss_pred CEEEEcCC-CeEEEEEecCCceehh----------------------------------------------hhhcccceE
Confidence 57888774 6899999997664422 122488999
Q ss_pred eEEEEeCC--eEEEEECCCeEEEEeCCCCCc-cccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 489 SGLIFTQE--SVLTVCREGHIKIWMRPGVAE-SQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 489 ~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~-~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
+|+.+..+ .|++++-|+.++++|+..-+. .-.....+|+ +++||++.++.|..+|-+
T Consensus 242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred EEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEeccccee
Confidence 99999985 599999999999999766553 3345667777 788999999999877543
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=221.26 Aligned_cols=280 Identities=16% Similarity=0.190 Sum_probs=228.2
Q ss_pred CCCCceeEEeCCCCCE-EEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 129 SSTSMTNTNFDGKGTY-IIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~-l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
-.++|..++|+|...+ +++.+.-.+.||+..+.. .++.+.--...+.++.|..| |.+|++|...|.|++||+.+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~--~~k~~srFk~~v~s~~fR~D---G~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS--VRKTFSRFKDVVYSVDFRSD---GRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhh--hhhhHHhhccceeEEEeecC---CeEEEccCCcCcEEEecccc
Confidence 3567889999997665 455666699999988733 66655545668999999998 89999999999999999654
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
+.++... ..|..+|..+.|+|++...|++|+.|+.+++||+.+.
T Consensus 100 ------r~iLR~~------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a------------------------ 143 (487)
T KOG0310|consen 100 ------RVILRQL------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA------------------------ 143 (487)
T ss_pred ------HHHHHHH------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc------------------------
Confidence 2221111 2489999999999999889999999999999999862
Q ss_pred CCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeE
Q 008939 288 KSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I 365 (548)
..+..+.+|+..|.|.+|+| ++.++++|+.||.|++||++.. ..+..+. |..+|..+.+-|.|.++++++. ..|
T Consensus 144 --~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~v 219 (487)
T KOG0310|consen 144 --YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSV 219 (487)
T ss_pred --EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeE
Confidence 12457788999999999999 5678999999999999999877 6666665 8899999999999999999864 599
Q ss_pred EEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCce
Q 008939 366 QVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT 444 (548)
Q Consensus 366 ~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 444 (548)
+|||+-+| +.+..+..|...|+|+++.. ++ ..|++++.|+.+++||+.+-+.+..+..
T Consensus 220 kVWDl~~G~qll~~~~~H~KtVTcL~l~s-------~~------~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-------- 278 (487)
T KOG0310|consen 220 KVWDLTTGGQLLTSMFNHNKTVTCLRLAS-------DS------TRLLSGSLDRHVKVFDTTNYKVVHSWKY-------- 278 (487)
T ss_pred EEEEecCCceehhhhhcccceEEEEEeec-------CC------ceEeecccccceEEEEccceEEEEeeec--------
Confidence 99999965 45555556999999999987 77 7999999999999999887776665544
Q ss_pred ecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCC
Q 008939 445 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 445 ~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~ 514 (548)
.++|.+++.+|+ .++.|-.||.+.+=++..
T Consensus 279 ----------------------------------------~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 279 ----------------------------------------PGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred ----------------------------------------ccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 578899999995 488888999888775443
No 72
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=8.1e-27 Score=222.43 Aligned_cols=314 Identities=14% Similarity=0.207 Sum_probs=249.3
Q ss_pred ccCCCCceeeecCCCCCCCcccCCCCcccccccCCCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCC-CCCeEEEec-
Q 008939 94 LGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQD-KDPIKSIHF- 171 (548)
Q Consensus 94 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~-~~~i~~~~~- 171 (548)
..+++-.+++.|.+.+-.+ ..-....-.+..-.|++-|..++.+...+.+.+++...|+|||+.... +.|+..+..
T Consensus 385 ~~~dg~~qPvpfP~dal~g--~gIPrharq~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl 462 (705)
T KOG0639|consen 385 VSADGQMQPVPFPPDALVG--PGIPRHARQINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCL 462 (705)
T ss_pred ecCCCcccCCCCCchhhcC--CCCCchHHhhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCcccccccc
Confidence 3344556667776654322 222233335677789999999999999999988888899999998643 456766654
Q ss_pred -CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 172 -SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 172 -~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
..+.+..+...|+ ++.|++|+.-.+|.||||..........+ ....-.++.++.+||.+ +.++++
T Consensus 463 ~rdnyiRSckL~pd---grtLivGGeastlsiWDLAapTprikael----------tssapaCyALa~spDak-vcFscc 528 (705)
T KOG0639|consen 463 NRDNYIRSCKLLPD---GRTLIVGGEASTLSIWDLAAPTPRIKAEL----------TSSAPACYALAISPDAK-VCFSCC 528 (705)
T ss_pred CcccceeeeEecCC---CceEEeccccceeeeeeccCCCcchhhhc----------CCcchhhhhhhcCCccc-eeeeec
Confidence 3457888889998 88899999999999999987321111111 11345788999999999 899999
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.||+|.|||+.. ...++.|++|+..+.|+.+++||..|-+|+-|.+||.||+++
T Consensus 529 sdGnI~vwDLhn--------------------------q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 529 SDGNIAVWDLHN--------------------------QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred cCCcEEEEEccc--------------------------ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence 999999999986 356888999999999999999999999999999999999999
Q ss_pred CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 331 EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
++.+.... ....|.++.++|.+.+|++|-+++.+.|......+. +.+.-|++.|.++.|.+ .| ++
T Consensus 583 grqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlhlheScVLSlKFa~-------cG------kw 647 (705)
T KOG0639|consen 583 GRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLHLHESCVLSLKFAY-------CG------KW 647 (705)
T ss_pred hhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccc-eeecccccEEEEEEecc-------cC------ce
Confidence 88765533 457899999999999999999999999988765443 45556999999999999 88 89
Q ss_pred EEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeE
Q 008939 411 FGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG 490 (548)
Q Consensus 411 l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~ 490 (548)
+++.+.|..+..|...-|..+...+. ..+|.+
T Consensus 648 fvStGkDnlLnawrtPyGasiFqskE------------------------------------------------~SsVls 679 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPYGASIFQSKE------------------------------------------------SSSVLS 679 (705)
T ss_pred eeecCchhhhhhccCccccceeeccc------------------------------------------------cCccee
Confidence 99999999999999887776544332 456777
Q ss_pred EEEeCC--eEEEEECCCeEEEEeC
Q 008939 491 LIFTQE--SVLTVCREGHIKIWMR 512 (548)
Q Consensus 491 l~fspd--~l~t~s~Dg~I~iW~~ 512 (548)
...+-| +|+||+.|....+|.+
T Consensus 680 CDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 680 CDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeeccCceEEEecCCCcceEEEEE
Confidence 777664 6999999999888875
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.7e-26 Score=212.29 Aligned_cols=264 Identities=17% Similarity=0.237 Sum_probs=219.9
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
|.+.|.++... +. .+++|+.||.+++||..- +.+....+|.++|.+++|.
T Consensus 104 hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~G---------------------------k~~~~~~Ght~~ik~v~~v 153 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKG---------------------------KSIKTIVGHTGPIKSVAWV 153 (423)
T ss_pred chhhhhhhccc--Cc-eEEEeecCCeeEEEecCC---------------------------ceEEEEecCCcceeeeEEE
Confidence 78889998887 34 899999999999999863 5577788999999988885
Q ss_pred C---CCCEEEEEECCCeEEEEeCCCCeE----EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC----------
Q 008939 309 T---DGTYLATVGRDGYLRVFDYSKEQL----ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME---------- 371 (548)
Q Consensus 309 p---~g~~l~s~~~dg~v~vwd~~~~~~----~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~---------- 371 (548)
- ....|++++.|.++++|-++.++. +..-++|...|.++...++|..+++|+.|.+|.||+..
T Consensus 154 ~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~ 233 (423)
T KOG0313|consen 154 IKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESS 233 (423)
T ss_pred ecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcccccccc
Confidence 4 234699999999999999987754 23345899999999999999999999999999999932
Q ss_pred ---------------CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 372 ---------------DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 372 ---------------~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
++.++..+.||..+|.+|.|++ .+ .+.+++.|.+|+.||+.++.+...+..
T Consensus 234 s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-------~~-------v~yS~SwDHTIk~WDletg~~~~~~~~ 299 (423)
T KOG0313|consen 234 SNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-------AT-------VIYSVSWDHTIKVWDLETGGLKSTLTT 299 (423)
T ss_pred chhhhhhhhhhhcccccCceEEecccccceeeEEEcC-------CC-------ceEeecccceEEEEEeecccceeeeec
Confidence 1236678899999999999986 44 899999999999999999999988877
Q ss_pred CCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCC---ceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEE
Q 008939 437 GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS---PLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIW 510 (548)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~---~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW 510 (548)
.....++...+.. ..+..|+.+..+++||.++.. +...+.+|..-|.++.|+|. .|++++.|+++++|
T Consensus 300 ~ksl~~i~~~~~~------~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 300 NKSLNCISYSPLS------KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred CcceeEeeccccc------ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence 5555555555543 567889999999999988764 56788899999999999995 49999999999999
Q ss_pred eCCCCCcc---ccCCCCcEEEec-CCCCceEeeecc
Q 008939 511 MRPGVAES---QSSSSETVLSTS-SKDKPLLSSKVV 542 (548)
Q Consensus 511 ~~~~~~~~---~~~~~~~v~~~s-~d~~~l~s~~~~ 542 (548)
|++....+ ...|.+.|+++- .++..|++|+..
T Consensus 374 DvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD 409 (423)
T KOG0313|consen 374 DVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGAD 409 (423)
T ss_pred EeccCCCcceeeccCCceEEEEeccCCceEEeccCc
Confidence 99887633 447888998665 777889999776
No 74
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.5e-25 Score=230.25 Aligned_cols=210 Identities=17% Similarity=0.272 Sum_probs=167.9
Q ss_pred ccCcceEEEEEec-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 228 VNNSRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 228 ~~~~~v~~l~~~p-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
.|.+.|++++|+| ++. +|++|+.|++|++||+...+... ....++..+.+|...|.+++
T Consensus 73 GH~~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~-------------------~~~~~l~~L~gH~~~V~~l~ 132 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQ-------------------NISDPIVHLQGHTKKVGIVS 132 (493)
T ss_pred CCCCCEEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCcccc-------------------ccCcceEEecCCCCcEEEEE
Confidence 4899999999999 566 99999999999999997532110 01246778889999999999
Q ss_pred ECCCC-CEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCC
Q 008939 307 FSTDG-TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 385 (548)
Q Consensus 307 ~sp~g-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~ 385 (548)
|+|++ ++|++++.|+.|+|||+++++.+..+..|...|.+++|+|++.+|++++.|+.|+|||+++++.+..+.+|...
T Consensus 133 f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred eCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 99975 79999999999999999999999899999999999999999999999999999999999999999999989765
Q ss_pred e-EEEEEecCCCCCCCCCCccceeEEEEEEe----CCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeee
Q 008939 386 V-SGVAFDSYWSQPNSDGTAETVMYRFGSVG----QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 460 (548)
Q Consensus 386 V-~~v~~~p~~~~~~~dg~~~~~~~~l~s~~----~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 460 (548)
+ ..+.|.+ ++ ..|++++ .|+.|++||+++.......
T Consensus 213 ~~~~~~w~~-------~~------~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~-------------------------- 253 (493)
T PTZ00421 213 KSQRCLWAK-------RK------DLIITLGCSKSQQRQIMLWDTRKMASPYST-------------------------- 253 (493)
T ss_pred cceEEEEcC-------CC------CeEEEEecCCCCCCeEEEEeCCCCCCceeE--------------------------
Confidence 4 4677887 65 3565554 4899999999864321110
Q ss_pred cccCCCCceeecCCCCceEEeec-CCCCeeEEEEeCCe--EEEEE-CCCeEEEEeCCCCC
Q 008939 461 GTLQPAPSMRDVPKLSPLVAHRV-HTEPLSGLIFTQES--VLTVC-REGHIKIWMRPGVA 516 (548)
Q Consensus 461 g~~~~~~~~~d~~~~~~~~~~~~-h~~~V~~l~fspd~--l~t~s-~Dg~I~iW~~~~~~ 516 (548)
... +...+....|+++. |++++ .|+.|++||+..+.
T Consensus 254 --------------------~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 254 --------------------VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred --------------------eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 011 12345556788864 66666 69999999998765
No 75
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=2.4e-27 Score=225.77 Aligned_cols=274 Identities=14% Similarity=0.240 Sum_probs=216.2
Q ss_pred cccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 227 SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 227 ~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
..|...|+++.|.|-..++|++++.|+.|+||++..+ ...++.+.+|..+|..++
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-------------------------~~~lrtf~gH~k~Vrd~~ 265 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-------------------------RRCLRTFKGHRKPVRDAS 265 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEecC-------------------------cceehhhhcchhhhhhhh
Confidence 4599999999999944449999999999999999763 456788889999999999
Q ss_pred ECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC-CEEEEEeCCCeEEEEECCCceeEEeccCCCCC
Q 008939 307 FSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 385 (548)
Q Consensus 307 ~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~ 385 (548)
|+++|..+++++-|+.|++||+++|+++..+.. ...+.|+.|+||+ +.+++|+.|+.|+.||+++++.++.+..|-+.
T Consensus 266 ~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~ 344 (503)
T KOG0282|consen 266 FNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA 344 (503)
T ss_pred ccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh
Confidence 999999999999999999999999999988863 4678999999999 78999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCC--ceecCCCCccccCCeeeeccc
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGS--PTFSTGSQSAHWDNVCPVGTL 463 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~g~~ 463 (548)
|..+.|-+ +| +++++.+.|+.++||+.+..-.+..+........ +...|.+ ..+..-++
T Consensus 345 i~~i~F~~-------~g------~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~------~~~~aQs~ 405 (503)
T KOG0282|consen 345 ILDITFVD-------EG------RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNG------KWFAAQSM 405 (503)
T ss_pred eeeeEEcc-------CC------ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCC------Ceehhhcc
Confidence 99999999 88 8999999999999999998877665544333332 2333333 22333344
Q ss_pred CCCCceeecC---CCCceEEeecCCC--CeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcc--ccCCCCcEE--EecCC
Q 008939 464 QPAPSMRDVP---KLSPLVAHRVHTE--PLSGLIFTQES--VLTVCREGHIKIWMRPGVAES--QSSSSETVL--STSSK 532 (548)
Q Consensus 464 ~~~~~~~d~~---~~~~~~~~~~h~~--~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~--~~~~~~~v~--~~s~d 532 (548)
+..+.++.+. .......+++|.. --..+.|+||+ |++|..||.+.+||..+.+.. ...|...+. .+.|.
T Consensus 406 dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 406 DNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred CceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC
Confidence 4444454432 2234456677744 34568899985 999999999999998876632 334545554 55665
Q ss_pred C-CceEeeeccccc
Q 008939 533 D-KPLLSSKVVTSS 545 (548)
Q Consensus 533 ~-~~l~s~~~~g~~ 545 (548)
. ..+|+++..|.+
T Consensus 486 e~Skvat~~w~G~I 499 (503)
T KOG0282|consen 486 EPSKVATCGWDGLI 499 (503)
T ss_pred CcceeEecccCcee
Confidence 5 358888887765
No 76
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.6e-27 Score=234.53 Aligned_cols=288 Identities=16% Similarity=0.293 Sum_probs=220.8
Q ss_pred ceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCC-----CCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 133 MTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSN-----SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~-----~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
...++..++-..|+.++...+.||.++...+.+-..+.+.. -.+..|.|... +.++|++++.+|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~--~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQL--YSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccc--hhhhheeecCCCcEEEEecCc
Confidence 34566677778888877778999998865533333333211 13456677744 367999999999999999986
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
.... +.+.. ..-|...++++.|++...++|++|+.||.|++||++...
T Consensus 120 ~~rn--k~l~~-------f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~----------------------- 167 (839)
T KOG0269|consen 120 SIRN--KLLTV-------FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK----------------------- 167 (839)
T ss_pred cccc--hhhhH-------hhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-----------------------
Confidence 3211 11111 113899999999999999999999999999999998632
Q ss_pred CCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeE
Q 008939 288 KSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I 365 (548)
....+......|..+.|+| .+.+++++...|.|++||++.. ++...+.+|.++|.|+.|+|++.+||+|+.|+.|
T Consensus 168 ---S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 168 ---SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV 244 (839)
T ss_pred ---ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence 1222333447899999999 6789999999999999999854 4567788999999999999999999999999999
Q ss_pred EEEECCCce--eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe--CCCeEEEEECCCCeEEeeeecCCCCC
Q 008939 366 QVWSMEDRK--VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG--QDTRLLLWDLEMDEIVVPLRRGPLGG 441 (548)
Q Consensus 366 ~vwd~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~--~Dg~i~lwd~~~~~~~~~~~~~~~~~ 441 (548)
+|||+.+.+ .+.++. -..+|..|+|-| +.. +.|++++ .|..|+|||++...
T Consensus 245 kiWd~t~~~~~~~~tIn-Tiapv~rVkWRP-------~~~-----~hLAtcsmv~dtsV~VWDvrRPY------------ 299 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTIN-TIAPVGRVKWRP-------ARS-----YHLATCSMVVDTSVHVWDVRRPY------------ 299 (839)
T ss_pred EEEeccCCCccceeEEe-ecceeeeeeecc-------Ccc-----chhhhhhccccceEEEEeecccc------------
Confidence 999998754 333443 457899999999 542 6788887 48999999998643
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeC---CeEEEEECCCeEEEEeCCCCC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ---ESVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp---d~l~t~s~Dg~I~iW~~~~~~ 516 (548)
-|..++..|...++.++|.. +.+.+++.||+|..-.+....
T Consensus 300 ----------------------------------IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 300 ----------------------------------IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred ----------------------------------ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 24556678999999999976 359999999999877766544
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-26 Score=233.46 Aligned_cols=265 Identities=14% Similarity=0.224 Sum_probs=209.5
Q ss_pred ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcc----------------cccccc--------------
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFP----------------VIKDQT-------------- 277 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----------------~~~~~~-------------- 277 (548)
.|++.|.++.|++||+ +||+|+.|+.|+||.+........... +.....
T Consensus 265 ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 5999999999999999 999999999999999865111000000 000000
Q ss_pred --eeeee--cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc-C
Q 008939 278 --QFSVA--HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-D 352 (548)
Q Consensus 278 --~~~~~--~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp-d 352 (548)
.-... ..-.....|++.+.+|.+.|..+.||.+ ++|++++.|.+||+|++...++++.+. |.+.|+|++|+| |
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 00000 0011347899999999999999999986 489999999999999999999999887 999999999999 7
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEe
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV 432 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~ 432 (548)
.+++++|+-|+.|+||++.+.+.+.+...+ .-|++++|.| || ...+.|+.+|.+++|+...-+...
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~P-------dG------k~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSP-------DG------KGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEecc-------CC------ceEEEEEeccEEEEEEccCCeEEE
Confidence 789999999999999999999888877744 8899999999 99 789999999999999998777665
Q ss_pred eeecC---------CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCC--CeeEEEEeCCe--EE
Q 008939 433 PLRRG---------PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTE--PLSGLIFTQES--VL 499 (548)
Q Consensus 433 ~~~~~---------~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~--~V~~l~fspd~--l~ 499 (548)
...-. ..++.+.|.+.... .+.+.+-|..++++|.+...++..++++.. .-....|+.|+ |+
T Consensus 488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~-----~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV 562 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGKRITGLQFFPGDPD-----EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIV 562 (712)
T ss_pred eeeEeeccCccccCceeeeeEecCCCCC-----eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEE
Confidence 54321 23555666555422 567788899999999999999999987644 33556788874 99
Q ss_pred EEECCCeEEEEeCCC
Q 008939 500 TVCREGHIKIWMRPG 514 (548)
Q Consensus 500 t~s~Dg~I~iW~~~~ 514 (548)
++++|..|+||+++.
T Consensus 563 s~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 563 SASEDSWVYIWKNDS 577 (712)
T ss_pred EeecCceEEEEeCCC
Confidence 999999999999744
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-26 Score=233.13 Aligned_cols=247 Identities=17% Similarity=0.248 Sum_probs=206.3
Q ss_pred ccC-CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccC--------------------------------CC--------
Q 008939 125 GAS-SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNS--------------------------------QD-------- 162 (548)
Q Consensus 125 ~~~-~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~--------------------------------~~-------- 162 (548)
... .|.++|.++.|++||+|||+++.| .|+||.+.. ..
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 444 899999999999999999999999 999998765 00
Q ss_pred ------------------CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeecc
Q 008939 163 ------------------KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNK 224 (548)
Q Consensus 163 ------------------~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 224 (548)
.+|++.+..|...|+.+.|+.+ ++|++++.|.+|++|++.. +.++..+.
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn----~fLLSSSMDKTVRLWh~~~------~~CL~~F~--- 407 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN----NFLLSSSMDKTVRLWHPGR------KECLKVFS--- 407 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC----CeeEeccccccEEeecCCC------cceeeEEe---
Confidence 3566777778889999999974 5899999999999999886 45555554
Q ss_pred CCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEE
Q 008939 225 DGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINS 304 (548)
Q Consensus 225 ~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (548)
|.+.|+||+|+|-++++|++|+-||.|+||++.. +.+..|.....-|++
T Consensus 408 ----HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d---------------------------~~Vv~W~Dl~~lITA 456 (712)
T KOG0283|consen 408 ----HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD---------------------------KKVVDWNDLRDLITA 456 (712)
T ss_pred ----cCCeeEEEEecccCCCcEeecccccceEEeecCc---------------------------CeeEeehhhhhhhee
Confidence 9999999999998888999999999999999974 446667666789999
Q ss_pred EEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee--c------CCceEEEEEccCC-CEEEEEeCCCeEEEEECCCcee
Q 008939 305 IAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--Y------YGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKV 375 (548)
Q Consensus 305 ~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~------~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~~ 375 (548)
++|.|||++.+.|+.+|.+++|+....+++....- | ...|+.+.|.|.. ..+++.+.|..|+|||+++..+
T Consensus 457 vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l 536 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL 536 (712)
T ss_pred EEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhh
Confidence 99999999999999999999999987776554321 1 2279999999744 3577888999999999999999
Q ss_pred EEeccCCCCCe--EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 376 VAWGEGHNSWV--SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 376 ~~~~~~h~~~V--~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+..|+|+...= ....|+. || ++|++++.|..|++|++...
T Consensus 537 v~KfKG~~n~~SQ~~Asfs~-------Dg------k~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 537 VHKFKGFRNTSSQISASFSS-------DG------KHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred hhhhcccccCCcceeeeEcc-------CC------CEEEEeecCceEEEEeCCCC
Confidence 99999764322 3567888 99 89999999999999998543
No 79
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.9e-26 Score=207.17 Aligned_cols=316 Identities=14% Similarity=0.175 Sum_probs=244.1
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
..++.+..|.+.++.++-... ...+.+++.|.+-+||.++. ++-+... .+|.+.|++|+|++.+.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~t---qpi~gtASADhTA~iWs~Es-----g~CL~~Y-------~GH~GSVNsikfh~s~~ 203 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADST---QPICGTASADHTARIWSLES-----GACLATY-------TGHTGSVNSIKFHNSGL 203 (481)
T ss_pred eehhhhcccccceeeehhhcC---CcceeecccccceeEEeecc-----ccceeee-------cccccceeeEEeccccc
Confidence 345566678888888877766 55788899999999999987 3333322 25999999999999998
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCC-----C------cccccccceeeeecCCC---CCCCCeeEeeecCCCeEEEEECC
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDS-----S------FPVIKDQTQFSVAHPRY---SKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~-----~------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
++++++.|++..||...-+-.... . .........+.-...+. --..|+..+.+|.+.|.++.|-.
T Consensus 204 -L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 204 -LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA 282 (481)
T ss_pred -eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence 999999999999998422100000 0 00000000000000000 12467889999999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc-eeEEeccCCCCCeEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSG 388 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V~~ 388 (548)
.|+.+++++.|.+..+||+++++++..+.+|...++.|+-+|..+++++.+.|-+.++||++.. ..+..|+||...|++
T Consensus 283 gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 283 GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence 9999999999999999999999999999999999999999999999999999999999999864 467889999999999
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC-CeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCC
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM-DEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAP 467 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~ 467 (548)
+.|.. |. .+++++.|.+|++||++. ...+.+++...+.+.+..+.+.. .+.+-.....+
T Consensus 363 ~vF~~-------dd-------~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~------iIAiPhDNRqv 422 (481)
T KOG0300|consen 363 VVFNT-------DD-------RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHP------IIAIPHDNRQV 422 (481)
T ss_pred EEEec-------CC-------ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCc------eEEeccCCceE
Confidence 99986 53 799999999999999986 45677888888888888877763 23333445567
Q ss_pred ceeecCCCC----ceEEeecCCCCeeEEEEeCC----eEEEEECCCeEEEEeCCCC
Q 008939 468 SMRDVPKLS----PLVAHRVHTEPLSGLIFTQE----SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 468 ~~~d~~~~~----~~~~~~~h~~~V~~l~fspd----~l~t~s~Dg~I~iW~~~~~ 515 (548)
+++|+.-.. |-..-++|..-|++++|..+ .|++++.|..+.-|.+...
T Consensus 423 RlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 423 RLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 777765332 33345689999999999986 2999999999999997654
No 80
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.3e-25 Score=222.32 Aligned_cols=374 Identities=16% Similarity=0.193 Sum_probs=256.7
Q ss_pred CCCEEEEecCC-eEEEEEccCCCCCCeEEEec----------------------CC--CCceEEEecCCCCCCceEEEEE
Q 008939 141 KGTYIIFNVGD-AIFISDLNSQDKDPIKSIHF----------------------SN--SNPVCHAFDQDAKDGHDLLIGL 195 (548)
Q Consensus 141 ~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~----------------------~~--~~~~~~~~~p~~~~~~~l~~g~ 195 (548)
..++|+++..+ .|++++-++-+ -+.++.+ .. -....+.|++. ...|.+..
T Consensus 269 s~r~I~cgCa~g~vrlFnp~tL~--y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet---~~klscVY 343 (1080)
T KOG1408|consen 269 SSRLIACGCAKGMVRLFNPETLD--YAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDET---TDKLSCVY 343 (1080)
T ss_pred ecceEEEeeccceeeecCcchhh--hccccccccccccchhhcccccccccccCcccCCceeEEEecCC---CceEEEEE
Confidence 45788887777 99999876632 1111111 00 12355678877 66899999
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCC----------CcEEEEEeCCCcEEEEEcCCCCC
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG----------DGAFVVGHADGNLYVYEKSKDGA 265 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~----------~~~l~s~~~dg~v~vwd~~~~~~ 265 (548)
.|..||+||++.. ...+ +....+ -|...|+++.-.|-. +..|++++.|++|++|++.....
T Consensus 344 ndhSlYvWDvrD~-~kvg-k~~s~l-------yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn 414 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDV-NKVG-KCSSML-------YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN 414 (1080)
T ss_pred cCceEEEEecccc-cccc-ceeeee-------eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc
Confidence 9999999999862 1112 222211 166667776665511 11699999999999999976211
Q ss_pred CCCCcc------------cccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE
Q 008939 266 GDSSFP------------VIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL 333 (548)
Q Consensus 266 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~ 333 (548)
...+. -.....++........-++.....-.....+.+++.+|+|++||+|..-|.|+|||+..-+.
T Consensus 415 -n~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~ 493 (1080)
T KOG1408|consen 415 -NQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY 493 (1080)
T ss_pred -cceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh
Confidence 11110 00001111111111111112222222346899999999999999999999999999999888
Q ss_pred EEeeeecCCceEEEEEccC---CCEEEEEeCCCeEEEEECCC-ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeE
Q 008939 334 ICGGKSYYGALLCCAWSMD---GKYILTGGEDDLVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409 (548)
Q Consensus 334 ~~~~~~~~~~v~~l~~spd---g~~l~sgs~dg~I~vwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~ 409 (548)
...+.+|...|.|+.|+-. .++||+++.|+.|+|||+.. ..+++++.+|.+.|++|.|-- +| ...
T Consensus 494 ~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-------~g----ln~ 562 (1080)
T KOG1408|consen 494 TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-------NG----LNR 562 (1080)
T ss_pred hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-------cC----Cce
Confidence 9999999999999999863 36899999999999999964 467889999999999999976 44 116
Q ss_pred EEEEEeCCCeEEEEECCCCeEEeeeecCCC------CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPL------GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 410 ~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
.+++++.|..|.+=-.+.......+..+.. ...+...+. -..+.++..|..++++++...+....+++
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~------~k~v~t~cQDrnirif~i~sgKq~k~FKg 636 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT------SKLVVTVCQDRNIRIFDIESGKQVKSFKG 636 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC------cceEEEEecccceEEEeccccceeeeecc
Confidence 799999998776432221111111111100 011111111 13456788899999999999999988875
Q ss_pred ---CCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeecccccc
Q 008939 484 ---HTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTSSY 546 (548)
Q Consensus 484 ---h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~~~ 546 (548)
|.+..-.+...|. +|+|.+.|.+|+++|+..++. ...+|.+.|. .|++|.+.||+..-.|.+|
T Consensus 637 s~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 637 SRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred cccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEE
Confidence 6667888888996 599999999999999888773 4458999887 8999999999998887776
No 81
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=4.6e-25 Score=227.59 Aligned_cols=234 Identities=14% Similarity=0.159 Sum_probs=173.2
Q ss_pred EEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 194 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 194 g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
|+.++.|.+|++... ...... ..|...|.+++|+|+..++|++|+.|+.|+|||+...+.....
T Consensus 50 GG~~gvI~L~~~~r~------~~v~~L------~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---- 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRK------PPVIKL------KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---- 113 (568)
T ss_pred CCceeEEEeeecCCC------ceEEEE------cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc----
Confidence 456678888886541 111111 2489999999999984449999999999999999753211000
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCE-EEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTY-LATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~-l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd 352 (548)
...++..+.+|...|.+++|+|++.. |++++.|+.|+|||+++++.+..+. |...|.+++|+|+
T Consensus 114 --------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd 178 (568)
T PTZ00420 114 --------------IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK 178 (568)
T ss_pred --------------cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC
Confidence 01355677889999999999998875 5789999999999999998777765 5678999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEE-----EecCCCCCCCCCCccceeEEEEEEeCCC----eEEEE
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA-----FDSYWSQPNSDGTAETVMYRFGSVGQDT----RLLLW 423 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~-----~~p~~~~~~~dg~~~~~~~~l~s~~~Dg----~i~lw 423 (548)
|.+|++++.|+.|+|||+++++.+..+.+|.+.+.... |++ ++ .+|++++.|+ .|+||
T Consensus 179 G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-------d~------~~IlTtG~d~~~~R~VkLW 245 (568)
T PTZ00420 179 GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG-------DD------NYILSTGFSKNNMREMKLW 245 (568)
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC-------CC------CEEEEEEcCCCCccEEEEE
Confidence 99999999999999999999999999999988764433 345 66 5788887764 79999
Q ss_pred ECCC-CeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEE
Q 008939 424 DLEM-DEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLT 500 (548)
Q Consensus 424 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t 500 (548)
|++. ..++..+.. ..+...+......++ .+++
T Consensus 246 Dlr~~~~pl~~~~l---------------------------------------------d~~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 246 DLKNTTSALVTMSI---------------------------------------------DNASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred ECCCCCCceEEEEe---------------------------------------------cCCccceEEeeeCCCCCEEEE
Confidence 9985 333332221 112233333333333 4789
Q ss_pred EECCCeEEEEeCCCCC
Q 008939 501 VCREGHIKIWMRPGVA 516 (548)
Q Consensus 501 ~s~Dg~I~iW~~~~~~ 516 (548)
|+.|+.|++|++..+.
T Consensus 281 GkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 281 GKGDGNCRYYQHSLGS 296 (568)
T ss_pred EECCCeEEEEEccCCc
Confidence 9999999999987654
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=210.60 Aligned_cols=277 Identities=15% Similarity=0.213 Sum_probs=222.8
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN 254 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~ 254 (548)
.++.+...|. ...+++|+.|..+.++|... ..+... ..+|...|+.+.|+|+.. .+++++.|-.
T Consensus 221 gi~ald~~~s---~~~ilTGG~d~~av~~d~~s------~q~l~~------~~Gh~kki~~v~~~~~~~-~v~~aSad~~ 284 (506)
T KOG0289|consen 221 GITALDIIPS---SSKILTGGEDKTAVLFDKPS------NQILAT------LKGHTKKITSVKFHKDLD-TVITASADEI 284 (506)
T ss_pred CeeEEeecCC---CCcceecCCCCceEEEecch------hhhhhh------ccCcceEEEEEEeccchh-heeecCCcce
Confidence 4455555554 45799999999999999765 122211 225899999999999998 8999999999
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI 334 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~ 334 (548)
|+||...... .......|+.+|+.+..+|.|.||++++.|++..+.|++++.++
T Consensus 285 i~vws~~~~s--------------------------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l 338 (506)
T KOG0289|consen 285 IRVWSVPLSS--------------------------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQL 338 (506)
T ss_pred EEeecccccc--------------------------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEE
Confidence 9999987521 23445667899999999999999999999999999999999987
Q ss_pred Eeeeec--CCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 335 CGGKSY--YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 335 ~~~~~~--~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
...... .-.+++.+|+|||.+|.+|..|+.|+|||+.++..+..|.+|.++|..|+|+. +| |+|+
T Consensus 339 t~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-------NG------Y~La 405 (506)
T KOG0289|consen 339 TVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-------NG------YWLA 405 (506)
T ss_pred EEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-------Cc------eEEE
Confidence 765532 23589999999999999999999999999999999999999999999999998 99 9999
Q ss_pred EEeCCCeEEEEECCCCeEEeeeecCCC--CCCceecCCCCccccCCeeeecccCCCCceee--cCCCCceEEeecCCCCe
Q 008939 413 SVGQDTRLLLWDLEMDEIVVPLRRGPL--GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRD--VPKLSPLVAHRVHTEPL 488 (548)
Q Consensus 413 s~~~Dg~i~lwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d--~~~~~~~~~~~~h~~~V 488 (548)
+++.|+.|++||++.-+...++..+.. ...+.|...|. .+.++..+-.+++++ ...+..+..+..|.+..
T Consensus 406 t~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt------~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~s 479 (506)
T KOG0289|consen 406 TAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT------YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLS 479 (506)
T ss_pred EEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCC------eEEeecceeEEEEEecccccceeeehhhhccccc
Confidence 999999999999999888887776543 66677766663 222332222233333 23667778888899899
Q ss_pred eEEEEeCC--eEEEEECCCeEEEEeC
Q 008939 489 SGLIFTQE--SVLTVCREGHIKIWMR 512 (548)
Q Consensus 489 ~~l~fspd--~l~t~s~Dg~I~iW~~ 512 (548)
+.+.|..+ .+++++.|..++++.+
T Consensus 480 t~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 480 TGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeeecccceEEeeccchhheEEeec
Confidence 99999885 5999999999998865
No 83
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=3e-24 Score=221.57 Aligned_cols=228 Identities=13% Similarity=0.135 Sum_probs=172.7
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccc--cceeeeeeeccCCccc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVG--KKLVGAHHYNKDGSVN 229 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~--~~~~~~~~~~~~~~~~ 229 (548)
.+++|+... ..++..+..|...|.+++|+|+. +.+|++|+.||.|++||+........ ..... ....|
T Consensus 55 vI~L~~~~r--~~~v~~L~gH~~~V~~lafsP~~--~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~------~L~gH 124 (568)
T PTZ00420 55 AIRLENQMR--KPPVIKLKGHTSSILDLQFNPCF--SEILASGSEDLTIRVWEIPHNDESVKEIKDPQC------ILKGH 124 (568)
T ss_pred EEEeeecCC--CceEEEEcCCCCCEEEEEEcCCC--CCEEEEEeCCCeEEEEECCCCCccccccccceE------EeecC
Confidence 789999876 34788889999999999999972 56899999999999999975210000 00010 11247
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...|.+++|+|++..+|++++.|+.|+|||++... .+..+. |...|.+++|+|
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--------------------------~~~~i~-~~~~V~Slswsp 177 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--------------------------RAFQIN-MPKKLSSLKWNI 177 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--------------------------EEEEEe-cCCcEEEEEECC
Confidence 89999999999988567899999999999998621 122232 346799999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEE-----EEEccCCCEEEEEeCCC----eEEEEECCC-ceeEEec
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLC-----CAWSMDGKYILTGGEDD----LVQVWSMED-RKVVAWG 379 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~-----l~~spdg~~l~sgs~dg----~I~vwd~~~-~~~~~~~ 379 (548)
+|.+|++++.|+.|+|||+++++.+..+.+|.+.+.+ ..|++++.+|++++.|+ .|+|||+++ .+++..+
T Consensus 178 dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~ 257 (568)
T PTZ00420 178 KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM 257 (568)
T ss_pred CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence 9999999999999999999999999999999876533 33568989999987764 799999995 5566554
Q ss_pred cC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 380 EG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 380 ~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
.. +.+.+.. .|++ .+| .++++|..|+.|++|++..+.
T Consensus 258 ~ld~~~~~L~p-~~D~------~tg------~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 258 SIDNASAPLIP-HYDE------STG------LIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred EecCCccceEE-eeeC------CCC------CEEEEEECCCeEEEEEccCCc
Confidence 42 2222222 3333 046 688999999999999998764
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-25 Score=222.39 Aligned_cols=240 Identities=19% Similarity=0.316 Sum_probs=210.6
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
.+.|+++.|+++|.+|+++..+ .|+|||..... .+..+.. |...+-|++|+.. .+.+|+.++.|..+|++.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~~~-----~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--KTRTLRGSHASRVGSLAWNSS-----VLSSGSRDGKILNHDVRI 289 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcc--ccccccCCcCceeEEEeccCc-----eEEEecCCCcEEEEEEec
Confidence 8899999999999999999988 99999999844 8888888 8999999999844 799999999999999997
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
...... . ...|...|..++|++++. +|++|+.|+.+.|||...
T Consensus 290 ~~~~~~-~----------~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~------------------------- 332 (484)
T KOG0305|consen 290 SQHVVS-T----------LQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLS------------------------- 332 (484)
T ss_pred chhhhh-h----------hhcccceeeeeEECCCCC-eeccCCCccceEeccCCC-------------------------
Confidence 321111 1 225899999999999999 999999999999999854
Q ss_pred CCCCeeEeeecCCCeEEEEECC-CCCEEEEEE--CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE--EeCC
Q 008939 288 KSNPIARWHICQGSINSIAFST-DGTYLATVG--RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT--GGED 362 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s--gs~d 362 (548)
..+...+..|...|.+++|+| ...+||+|+ .|+.|++||..+++.+..+. ....|..|.|++..+-|++ |..+
T Consensus 333 -~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 333 -PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred -ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCC
Confidence 467888899999999999999 677899864 79999999999999988766 4578999999999876665 4457
Q ss_pred CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 363 DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 363 g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+.|.||+..+.+.+..+.+|...|..++++| || ..+++++.|.+|++|++-..
T Consensus 411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-------dg------~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 411 NQITLWKYPSMKLVAELLGHTSRVLYLALSP-------DG------ETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CcEEEEeccccceeeeecCCcceeEEEEECC-------CC------CEEEEecccCcEEeccccCC
Confidence 8999999999999999999999999999999 99 79999999999999998764
No 85
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.4e-26 Score=212.77 Aligned_cols=272 Identities=18% Similarity=0.169 Sum_probs=225.0
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
|...|.-+.|+++|. +||+++.|.+..+|++..+.. .+..+++.+|..+|.-+.||
T Consensus 223 htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~-----------------------~kl~~tlvgh~~~V~yi~wS 278 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVH-----------------------FKLKKTLVGHSQPVSYIMWS 278 (519)
T ss_pred CCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcc-----------------------eeeeeeeecccCceEEEEEC
Confidence 899999999999999 999999999999999875322 23467788899999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeee-cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC-CCCe
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH-NSWV 386 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-~~~V 386 (548)
||.++|++|+.|..+++||..++.+...+.. +...+.+++|.|||..+++|+.|+.|..||++ ++.+..+++- ...|
T Consensus 279 PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v 357 (519)
T KOG0293|consen 279 PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKV 357 (519)
T ss_pred CCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccccccee
Confidence 9999999999999999999999998776643 45789999999999999999999999999997 4445555543 3568
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
.+++..+ || .++++.+.|..|++++..+...+..+..+.++++.+++.++ ..+.+--.+..
T Consensus 358 ~dlait~-------Dg------k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~------k~~LvnL~~qe 418 (519)
T KOG0293|consen 358 HDLAITY-------DG------KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDG------KLALVNLQDQE 418 (519)
T ss_pred EEEEEcC-------CC------cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCC------cEEEEEcccCe
Confidence 9999999 99 78889999999999999988887777777888888888887 33344455678
Q ss_pred CceeecCCCCceEEeecCCCCe--eEEEEeC---CeEEEEECCCeEEEEeCCCCC--ccccCCCCcEE--EecCCC-Cce
Q 008939 467 PSMRDVPKLSPLVAHRVHTEPL--SGLIFTQ---ESVLTVCREGHIKIWMRPGVA--ESQSSSSETVL--STSSKD-KPL 536 (548)
Q Consensus 467 ~~~~d~~~~~~~~~~~~h~~~V--~~l~fsp---d~l~t~s~Dg~I~iW~~~~~~--~~~~~~~~~v~--~~s~d~-~~l 536 (548)
+.+||+.....+..+.||...- -.-+|-- ..+++|++|++|+||++.+++ ....+|...|. +++|.+ .++
T Consensus 419 i~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ 498 (519)
T KOG0293|consen 419 IHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMF 498 (519)
T ss_pred eEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHh
Confidence 9999999989999999997653 3334543 359999999999999998877 45568887776 677777 458
Q ss_pred Eeeecccc
Q 008939 537 LSSKVVTS 544 (548)
Q Consensus 537 ~s~~~~g~ 544 (548)
|+|...|.
T Consensus 499 ASasDDgt 506 (519)
T KOG0293|consen 499 ASASDDGT 506 (519)
T ss_pred hccCCCCe
Confidence 88877654
No 86
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=7.5e-26 Score=214.49 Aligned_cols=259 Identities=15% Similarity=0.280 Sum_probs=208.4
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecC--CeEEEEEccCCCCC--------CeEEEecCCCCceEEEecCCCCCCceEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVG--DAIFISDLNSQDKD--------PIKSIHFSNSNPVCHAFDQDAKDGHDLLIG 194 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~--d~v~vwd~~~~~~~--------~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g 194 (548)
..-.|.+.|..+.+.|+...|++... ..++|||....... |-..+.+|...-..+.|++.. ...|+++
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~--~g~Lls~ 196 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQ--EGTLLSG 196 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccc--ceeEeec
Confidence 44568999999999999888877433 39999998865422 233777888778889999984 4589999
Q ss_pred EcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccc
Q 008939 195 LNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 195 ~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 274 (548)
+.|+.|++||+.....+ .+.+... .....|...|.+++|++....+|++++.|+.+.|||++.. .
T Consensus 197 ~~d~~i~lwdi~~~~~~-~~~~~p~----~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~--------- 261 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKE-DKVVDPK----TIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-T--------- 261 (422)
T ss_pred cCCCcEEEEeccccccC-Cccccce----EEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-C---------
Confidence 99999999999874221 1111111 1123589999999999998889999999999999999962 1
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccC
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spd 352 (548)
.++.+...+|.+.|+|++|+| ++..||+|+.|++|++||++.. +.+.++.+|...|.++.|+|+
T Consensus 262 --------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 262 --------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred --------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence 345566778899999999999 7788999999999999999875 467889999999999999997
Q ss_pred CC-EEEEEeCCCeEEEEECCCc--------------eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 353 GK-YILTGGEDDLVQVWSMEDR--------------KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 353 g~-~l~sgs~dg~I~vwd~~~~--------------~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
.+ .||+++.|+.+.|||+..- +++....||...|..+.|+| +.. ..|+|++.|
T Consensus 328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp-------~eP-----W~I~SvaeD 395 (422)
T KOG0264|consen 328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP-------NEP-----WTIASVAED 395 (422)
T ss_pred CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC-------CCC-----eEEEEecCC
Confidence 65 7889999999999999641 23455568999999999999 431 689999999
Q ss_pred CeEEEEECC
Q 008939 418 TRLLLWDLE 426 (548)
Q Consensus 418 g~i~lwd~~ 426 (548)
+.+.||.+.
T Consensus 396 N~LqIW~~s 404 (422)
T KOG0264|consen 396 NILQIWQMA 404 (422)
T ss_pred ceEEEeecc
Confidence 999999976
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.9e-25 Score=211.65 Aligned_cols=294 Identities=15% Similarity=0.172 Sum_probs=230.1
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccccee---eeeeec--cCC-cccCcceEEEEEe
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLV---GAHHYN--KDG-SVNNSRCTSVTWV 239 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~---~~~~~~--~~~-~~~~~~v~~l~~~ 239 (548)
+..+.-|.-.++|++++|+ ..+.+.++.+|.|.-|++.+.......... ...++. +.. +.|...+.+++.+
T Consensus 135 ~~~~~~H~~s~~~vals~d---~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS 211 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPD---DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS 211 (479)
T ss_pred ceeeccccCcceEEEeecc---ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence 5566668889999999999 778999999999999998874221000000 000111 111 3689999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC
Q 008939 240 PGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR 319 (548)
Q Consensus 240 p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~ 319 (548)
+|+. +|++|+.|..|.||+.++ .++++.|.+|.+.|.+++|-.....|++++.
T Consensus 212 ~Dgk-ylatgg~d~~v~Iw~~~t--------------------------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~ 264 (479)
T KOG0299|consen 212 SDGK-YLATGGRDRHVQIWDCDT--------------------------LEHVKVFKGHRGAVSSLAFRKGTSELYSASA 264 (479)
T ss_pred CCCc-EEEecCCCceEEEecCcc--------------------------cchhhcccccccceeeeeeecCccceeeeec
Confidence 9999 999999999999999987 5678889999999999999988888999999
Q ss_pred CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCC
Q 008939 320 DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPN 399 (548)
Q Consensus 320 dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 399 (548)
|+.|++|+++....+.++.+|.+.|..|....-++.+-+|+.|+++++|++..- ....+.+|.+.+-|++|-.
T Consensus 265 Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In------ 337 (479)
T KOG0299|consen 265 DRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN------ 337 (479)
T ss_pred CCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec------
Confidence 999999999988889999999999999998888888888889999999999543 3345678999999999974
Q ss_pred CCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceE
Q 008939 400 SDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV 479 (548)
Q Consensus 400 ~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~ 479 (548)
+ ..|++|+.||.|.||++.+.+++...+..+..... ..+
T Consensus 338 -~-------~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~-------------------------------~~~-- 376 (479)
T KOG0299|consen 338 -D-------EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPE-------------------------------LDP-- 376 (479)
T ss_pred -c-------cceeeccCCceEEEeeecccCceeEeeccccccCC-------------------------------ccc--
Confidence 4 48999999999999999999888776542211100 000
Q ss_pred EeecCCCCeeEEEEeC--CeEEEEECCCeEEEEeCCCCCcccc-----CCCCcEE--EecCCCCceEee
Q 008939 480 AHRVHTEPLSGLIFTQ--ESVLTVCREGHIKIWMRPGVAESQS-----SSSETVL--STSSKDKPLLSS 539 (548)
Q Consensus 480 ~~~~h~~~V~~l~fsp--d~l~t~s~Dg~I~iW~~~~~~~~~~-----~~~~~v~--~~s~d~~~l~s~ 539 (548)
..+...|++|+..| |.+++|+.+|.||+|.+..+..... ....-|. +|+++|++|++|
T Consensus 377 --~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 377 --VNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred --cccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 02335799999988 5799999999999999887742221 2223333 678999988777
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=2.6e-26 Score=214.48 Aligned_cols=281 Identities=16% Similarity=0.210 Sum_probs=232.6
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
...|.+.+-.+.|-++...+++++.| .|++|+...+..+.+.++......++.++|+++ +..+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~---~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD---NKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC---CceEEeecCCCceeeee
Confidence 34678888899999998899998888 999999988776788889888899999999999 88899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+.+. +.. ....+|.+.|+++.|..... .+++|+.|.+|++||+.+.......++.
T Consensus 248 vd~~-----r~~-------~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~~------------ 302 (459)
T KOG0288|consen 248 VDSL-----RLR-------HTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLPG------------ 302 (459)
T ss_pred ccch-----hhh-------hhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheecccccc------------
Confidence 9872 111 11235999999999998876 6999999999999999873332222221
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
..+..++.+ ...++++-.|+.||+||.+...++.....+ +.|+++..++++..|.+++.|.+
T Consensus 303 ---------------S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdt 364 (459)
T KOG0288|consen 303 ---------------SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDT 364 (459)
T ss_pred ---------------ccccceEec--ceeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCc
Confidence 344555554 456888999999999999999998888766 58999999999999999999999
Q ss_pred EEEEECCCceeEEeccCC----CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCC
Q 008939 365 VQVWSMEDRKVVAWGEGH----NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG 440 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~h----~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~ 440 (548)
+.+.|+++.+..+.+.+. ....+.+.|+| ++ .++++|+.||.|+||++.++++...+..
T Consensus 365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-------d~------~YvaAGS~dgsv~iW~v~tgKlE~~l~~---- 427 (459)
T KOG0288|consen 365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-------DG------SYVAAGSADGSVYIWSVFTGKLEKVLSL---- 427 (459)
T ss_pred eeeeecccccEEEEeeccccccccccceeEECC-------CC------ceeeeccCCCcEEEEEccCceEEEEecc----
Confidence 999999998887777532 23478999999 99 7999999999999999999998876654
Q ss_pred CCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCC-CCeeEEEEeCC--eEEEEECCCeEEEEe
Q 008939 441 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHT-EPLSGLIFTQE--SVLTVCREGHIKIWM 511 (548)
Q Consensus 441 ~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~-~~V~~l~fspd--~l~t~s~Dg~I~iW~ 511 (548)
.+. ..|++++|+|. +|++++.++.+++|.
T Consensus 428 ------------------------------------------s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 428 ------------------------------------------STSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ------------------------------------------CCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 122 26999999996 599999999999993
No 89
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=8.6e-26 Score=203.61 Aligned_cols=254 Identities=19% Similarity=0.296 Sum_probs=205.7
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccC------C---------CC-CCeEEEecCCCCceEEEecCCC
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNS------Q---------DK-DPIKSIHFSNSNPVCHAFDQDA 185 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~------~---------~~-~~i~~~~~~~~~~~~~~~~p~~ 185 (548)
..-...|..+..+.+|++||.++++++.| .|+|.|++. . .. ..|+++.-|-+.+.++.|+|.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr- 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR- 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch-
Confidence 34556799999999999999999999999 999999872 0 01 246777778999999999999
Q ss_pred CCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 008939 186 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 265 (548)
Q Consensus 186 ~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~ 265 (548)
...|++|+.|+.|++||+........-++++ ...+|.+|.|+|.|+ +|++|..-..+++||+++-..
T Consensus 184 --e~ILiS~srD~tvKlFDfsK~saKrA~K~~q----------d~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Qc 250 (430)
T KOG0640|consen 184 --ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ----------DTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQC 250 (430)
T ss_pred --hheEEeccCCCeEEEEecccHHHHHHHHHhh----------ccceeeeEeecCCCc-eEEEecCCCceeEEeccceeE
Confidence 7789999999999999988632111112211 467899999999999 999999999999999987211
Q ss_pred CCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-ecC-Cc
Q 008939 266 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYY-GA 343 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~-~~ 343 (548)
... .+| -+.|.+.|+++.+++.+++.++++.||.|++||--.++++.++. .|. ..
T Consensus 251 fvs--------------------anP---d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse 307 (430)
T KOG0640|consen 251 FVS--------------------ANP---DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE 307 (430)
T ss_pred eee--------------------cCc---ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCce
Confidence 100 011 14577999999999999999999999999999999999887754 454 47
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec--------------------------------------------
Q 008939 344 LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG-------------------------------------------- 379 (548)
Q Consensus 344 v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~-------------------------------------------- 379 (548)
|.+..|..+++++++.+.|..+++|.+.+++++..+
T Consensus 308 vcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr 387 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR 387 (430)
T ss_pred eeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence 889999999999999999999999999888766644
Q ss_pred -----cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 380 -----EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 380 -----~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
.+|++.+..+.-+| .+ ..+++|+.|-.+++|--+
T Consensus 388 ~~l~slgHn~a~R~i~HSP-------~~------p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 388 VALLSLGHNGAVRWIVHSP-------VE------PAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhcccCCCCCceEEEeCC-------CC------Cceeeecccceeeeeeec
Confidence 36788888888888 66 679999999999999644
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=3e-25 Score=228.18 Aligned_cols=265 Identities=19% Similarity=0.269 Sum_probs=218.8
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
+...++|..|..+ .+++++.+..|.+||..+ +..+... ...|.+.|.++++...+. +|++|+.
T Consensus 207 ~~~~~~~~q~~~~-----~~~~~s~~~tl~~~~~~~-----~~~i~~~------l~GH~g~V~~l~~~~~~~-~lvsgS~ 269 (537)
T KOG0274|consen 207 DDHVVLCLQLHDG-----FFKSGSDDSTLHLWDLNN-----GYLILTR------LVGHFGGVWGLAFPSGGD-KLVSGST 269 (537)
T ss_pred CcchhhhheeecC-----eEEecCCCceeEEeeccc-----ceEEEee------ccCCCCCceeEEEecCCC-EEEEEec
Confidence 4567788888743 799999999999999876 2222221 225999999999987555 9999999
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~ 331 (548)
|.++++||..+ ...+..+.+|+..|.++...+ .++++|+.|.+|++|++.++
T Consensus 270 D~t~rvWd~~s--------------------------g~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~ 321 (537)
T KOG0274|consen 270 DKTERVWDCST--------------------------GECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG 321 (537)
T ss_pred CCcEEeEecCC--------------------------CcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCc
Confidence 99999999876 356888899999999998754 47888999999999999999
Q ss_pred eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE
Q 008939 332 QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 332 ~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
.++..+.+|.++|+++... +.++++|+.|+.|++||+.++++++.+.+|..+|.++.+.+ . .++
T Consensus 322 ~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-------~-------~~~ 385 (537)
T KOG0274|consen 322 ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-------E-------NRL 385 (537)
T ss_pred ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-------c-------ceE
Confidence 9999999999999999998 77999999999999999999999999999999999999864 2 389
Q ss_pred EEEeCCCeEEEEECCCC-eEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeE
Q 008939 412 GSVGQDTRLLLWDLEMD-EIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG 490 (548)
Q Consensus 412 ~s~~~Dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~ 490 (548)
++|+.|+.|++||+++. +|+. .+.+|.+-|..
T Consensus 386 ~Sgs~D~~IkvWdl~~~~~c~~-----------------------------------------------tl~~h~~~v~~ 418 (537)
T KOG0274|consen 386 LSGSLDTTIKVWDLRTKRKCIH-----------------------------------------------TLQGHTSLVSS 418 (537)
T ss_pred EeeeeccceEeecCCchhhhhh-----------------------------------------------hhcCCcccccc
Confidence 99999999999999987 5443 45568888999
Q ss_pred EEEeCCeEEEEECCCeEEEEeCCCCCcccc--C-CCCcEEEecCCCCceEeeecccc
Q 008939 491 LIFTQESVLTVCREGHIKIWMRPGVAESQS--S-SSETVLSTSSKDKPLLSSKVVTS 544 (548)
Q Consensus 491 l~fspd~l~t~s~Dg~I~iW~~~~~~~~~~--~-~~~~v~~~s~d~~~l~s~~~~g~ 544 (548)
+.+....|++++.|++|++||......... . +...+.++....+.++.+...|.
T Consensus 419 l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~ 475 (537)
T KOG0274|consen 419 LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGS 475 (537)
T ss_pred cccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCe
Confidence 999889999999999999999887663322 3 44677777766555555544443
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.5e-25 Score=198.28 Aligned_cols=275 Identities=16% Similarity=0.220 Sum_probs=213.5
Q ss_pred eEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 008939 190 DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS 269 (548)
Q Consensus 190 ~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 269 (548)
.|++|+....|.-+++..................-....|.+.|++++.+ +. ++++|+.|.+|+|||+++.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~------ 73 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP-YVASGSSDETIHIYDMRKR------ 73 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce-eEeccCCCCcEEEEeccch------
Confidence 48889999888888876421111111111111111233589999999985 55 9999999999999999872
Q ss_pred cccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC--EEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEE
Q 008939 270 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT--YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCC 347 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 347 (548)
..+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|+....+++..+++|.+.|+.+
T Consensus 74 --------------------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~l 133 (362)
T KOG0294|consen 74 --------------------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDL 133 (362)
T ss_pred --------------------hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccccee
Confidence 33455666789999999998654 89999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 348 ~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+.+|.+++.++.+.|+.+++||+-+++.-..+. -...-+.|.|+| .| .+++..+.+ .|-+|.+..
T Consensus 134 siHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~-------~G------d~F~v~~~~-~i~i~q~d~ 198 (362)
T KOG0294|consen 134 SIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSP-------QG------DHFVVSGRN-KIDIYQLDN 198 (362)
T ss_pred EecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcC-------CC------CEEEEEecc-EEEEEeccc
Confidence 999999999999999999999999887654444 222234499999 77 466666654 699999998
Q ss_pred CeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC----eEEEEEC
Q 008939 428 DEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE----SVLTVCR 503 (548)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd----~l~t~s~ 503 (548)
..+...+..+..+.++.|-. ...+.+|..+..+.+||.....++..+.+|..+|.++.+-.+ +|+|++.
T Consensus 199 A~v~~~i~~~~r~l~~~~l~-------~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 199 ASVFREIENPKRILCATFLD-------GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred HhHhhhhhccccceeeeecC-------CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence 88777666643333333322 345678888899999999999999999999999999996443 6999999
Q ss_pred CCeEEEEeCCCC
Q 008939 504 EGHIKIWMRPGV 515 (548)
Q Consensus 504 Dg~I~iW~~~~~ 515 (548)
||.|++||+...
T Consensus 272 DG~I~vWd~~~~ 283 (362)
T KOG0294|consen 272 DGFIKVWDIDME 283 (362)
T ss_pred CceEEEEEcccc
Confidence 999999998765
No 92
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.1e-26 Score=210.39 Aligned_cols=241 Identities=20% Similarity=0.291 Sum_probs=200.4
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
.+.-+.|..|+||++ +|++|+.||-|.+|+..+ ++....+.- .....+-.+..+|.|+.|+
T Consensus 212 ~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~-GKlrKDLkY-----------------QAqd~fMMmd~aVlci~FS 272 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTT-GKLRKDLKY-----------------QAQDNFMMMDDAVLCISFS 272 (508)
T ss_pred cccchhheeeCCCCc-eEeeccccceeeeehhcc-chhhhhhhh-----------------hhhcceeecccceEEEeec
Confidence 466788999999999 999999999999999976 444433321 1122344456899999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeE
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 387 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~ 387 (548)
.|...||+|+.||.|+||.+++|+++..+. +|...|+|+.|+.|+..+++++.|.++++.-+.+|++++.++||.+.|+
T Consensus 273 RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 273 RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 999999999999999999999999998876 8999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCC
Q 008939 388 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAP 467 (548)
Q Consensus 388 ~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~ 467 (548)
...|.+ || ..+++++.||+|++|+.++.+|+.+++..
T Consensus 353 ~a~ft~-------dG------~~iisaSsDgtvkvW~~KtteC~~Tfk~~------------------------------ 389 (508)
T KOG0275|consen 353 EATFTD-------DG------HHIISASSDGTVKVWHGKTTECLSTFKPL------------------------------ 389 (508)
T ss_pred ceEEcC-------CC------CeEEEecCCccEEEecCcchhhhhhccCC------------------------------
Confidence 999999 99 89999999999999999999999877651
Q ss_pred ceeecCCCCceEEeecCCCCeeEEEEeC---CeEEEEECCCeEEEEeCCCCCccccC--CC---CcEE-EecCCCCceEe
Q 008939 468 SMRDVPKLSPLVAHRVHTEPLSGLIFTQ---ESVLTVCREGHIKIWMRPGVAESQSS--SS---ETVL-STSSKDKPLLS 538 (548)
Q Consensus 468 ~~~d~~~~~~~~~~~~h~~~V~~l~fsp---d~l~t~s~Dg~I~iW~~~~~~~~~~~--~~---~~v~-~~s~d~~~l~s 538 (548)
+...+|+.+..-| +.++.+....+|.|-++.+.....+. .. .-+. .+||.|+++..
T Consensus 390 ---------------~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYc 454 (508)
T KOG0275|consen 390 ---------------GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYC 454 (508)
T ss_pred ---------------CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEE
Confidence 1244667776655 46888999999999999887654442 22 2233 67899998887
Q ss_pred eecccccc
Q 008939 539 SKVVTSSY 546 (548)
Q Consensus 539 ~~~~g~~~ 546 (548)
.+..+..|
T Consensus 455 igED~vlY 462 (508)
T KOG0275|consen 455 IGEDGVLY 462 (508)
T ss_pred EccCcEEE
Confidence 77666554
No 93
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.4e-26 Score=209.63 Aligned_cols=278 Identities=12% Similarity=0.176 Sum_probs=227.2
Q ss_pred cCCCCCCceeEEeCCCC-CEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 126 ASSSSTSMTNTNFDGKG-TYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g-~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
..+|...|.+++-+|.. ..+++++.| .|+|||+.. ...+..+..|.+.|..++++.. .+++++.|.+|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--R~~~~~f~AH~G~V~Gi~v~~~-----~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--RECIRTFKAHEGLVRGICVTQT-----SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhh--hhhhheeecccCceeeEEeccc-----ceEEecCCcceeee
Confidence 37899999999999987 567777777 999999998 4588999999999999999874 58999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
.++. ++.+.+. .+..+..|.-+..+. .|++++. .|.|||...
T Consensus 135 k~~~---~p~~til-----------g~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R--------------------- 176 (433)
T KOG0268|consen 135 KIDG---PPLHTIL-----------GKSVYLGIDHHRKNS-VFATCGE--QIDIWDEQR--------------------- 176 (433)
T ss_pred eccC---Ccceeee-----------ccccccccccccccc-cccccCc--eeeeccccc---------------------
Confidence 8875 1111111 466677787777776 8888876 599999875
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
.+|+..+......|.++.|+|- ...|+++..|+.|.+||+++..++..+. ....-+.|+|+|.+-.+++|++|
T Consensus 177 -----~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED 250 (433)
T KOG0268|consen 177 -----DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANED 250 (433)
T ss_pred -----CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeecccc
Confidence 4677777777789999999994 5678888899999999999998776654 23446789999988889999999
Q ss_pred CeEEEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCC
Q 008939 363 DLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGG 441 (548)
Q Consensus 363 g~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~ 441 (548)
..++.||++.- +++....+|.+.|..|+|+| -| .-|++|+.|.+|+||..+.+.....+..
T Consensus 251 ~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-------tG------~EfvsgsyDksIRIf~~~~~~SRdiYht----- 312 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-------TG------QEFVSGSYDKSIRIFPVNHGHSRDIYHT----- 312 (433)
T ss_pred ccceehhhhhhcccchhhcccceeEEEeccCC-------Cc------chhccccccceEEEeecCCCcchhhhhH-----
Confidence 99999999874 57888899999999999999 88 7899999999999999987654322111
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~ 513 (548)
--...|.+|.|+.| ++++||+|+.||+|.-.
T Consensus 313 -----------------------------------------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 313 -----------------------------------------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred -----------------------------------------hhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 11356999999998 59999999999999843
No 94
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.7e-25 Score=197.54 Aligned_cols=264 Identities=13% Similarity=0.215 Sum_probs=199.3
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
..+.|.+|+|+|...++|++++.||+||+|++...+.... +....|.++|.+++|+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------------ka~~~~~~PvL~v~Ws 81 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------------KAQQSHDGPVLDVCWS 81 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------------hhhhccCCCeEEEEEc
Confidence 4788999999996665888999999999999986433221 2234467999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC--EEEEEeCCCeEEEEECCCceeEEeccCCCCCe
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK--YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 386 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~--~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V 386 (548)
.||..+++++.|+.+++||+.+++. ..+..|.++|.++.|-+... .|++|+.|.+|+.||++...++.+++ -.+.|
T Consensus 82 ddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRv 159 (347)
T KOG0647|consen 82 DDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERV 159 (347)
T ss_pred cCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-cccee
Confidence 9999999999999999999999965 45677999999999988765 89999999999999999999999888 55677
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC---CCCCCceecCCCCccccCCeeeeccc
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG---PLGGSPTFSTGSQSAHWDNVCPVGTL 463 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~~~g~~ 463 (548)
+++..-. .+++.+..+..|.+|+|+.+......... -+..++++..+. ....+|+.
T Consensus 160 Ya~Dv~~---------------pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~------~~~alGsi 218 (347)
T KOG0647|consen 160 YAADVLY---------------PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK------DGFALGSI 218 (347)
T ss_pred eehhccC---------------ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC------CceEeeee
Confidence 7776632 37888889999999999876543322111 223334443333 22267777
Q ss_pred CCCCceeecCCC--CceEEeecCCC---------CeeEEEEeCC--eEEEEECCCeEEEEeCCCCC--ccccCCCCcEE-
Q 008939 464 QPAPSMRDVPKL--SPLVAHRVHTE---------PLSGLIFTQE--SVLTVCREGHIKIWMRPGVA--ESQSSSSETVL- 527 (548)
Q Consensus 464 ~~~~~~~d~~~~--~~~~~~~~h~~---------~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~--~~~~~~~~~v~- 527 (548)
++.+.+..+... +.-+.++.|.. .|++|+|+|. .|+|++.||++.+||-..+. .....+...|.
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItc 298 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITC 298 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccce
Confidence 777777666554 55566666752 5788999995 39999999999999965433 22233444444
Q ss_pred -EecCCCCceEee
Q 008939 528 -STSSKDKPLLSS 539 (548)
Q Consensus 528 -~~s~d~~~l~s~ 539 (548)
+|+.+|.+++.+
T Consensus 299 c~fn~~G~ifaYA 311 (347)
T KOG0647|consen 299 CSFNRNGSIFAYA 311 (347)
T ss_pred eEecCCCCEEEEE
Confidence 888999988776
No 95
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=5e-25 Score=229.22 Aligned_cols=288 Identities=17% Similarity=0.230 Sum_probs=222.0
Q ss_pred cCcceEEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGH--ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
+...|.+|..+|++. .+++|+ .||.++||+.+.-........ ......+.....|.+.|+|+.
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~--------------~~l~k~l~~m~~h~~sv~CVR 76 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKN--------------ENLPKHLCTMDDHDGSVNCVR 76 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccchhhhhh--------------cccchhheeeccccCceeEEE
Confidence 456699999999999 999999 999999999764111000000 001355677788999999999
Q ss_pred ECCCCCEEEEEECCCeEEEEeCCC------------------CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 008939 307 FSTDGTYLATVGRDGYLRVFDYSK------------------EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 368 (548)
Q Consensus 307 ~sp~g~~l~s~~~dg~v~vwd~~~------------------~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vw 368 (548)
|+|||++||+|+.|+.|.||+... .+.+..+.+|...|..++|+|++.+|++++-|+.|.||
T Consensus 77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIW 156 (942)
T ss_pred ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEE
Confidence 999999999999999999999872 13567789999999999999999999999999999999
Q ss_pred ECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-------CCCC
Q 008939 369 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-------PLGG 441 (548)
Q Consensus 369 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-------~~~~ 441 (548)
|..+.+.+..+++|.+.|..+.|+| -| ++|++-+.|++|++|++..-.+...+..+ ....
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP-------~G------ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDP-------IG------KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred ccccceeeeeeecccccccceEECC-------cc------CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence 9999999999999999999999999 88 89999999999999998776666655442 1123
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeC-------C------------eEEEEE
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ-------E------------SVLTVC 502 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp-------d------------~l~t~s 502 (548)
.+.++|+|....-...+ -.-...+.+.+...++.-..+-||..++.++.|+| . .+++|+
T Consensus 224 RlSWSPDG~~las~nA~--n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 224 RLSWSPDGHHLASPNAV--NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred ecccCCCcCeecchhhc--cCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 45667777421111111 11233455666677777788899999999999998 2 268999
Q ss_pred CCCeEEEEeCCCCCcccc---CCCCcEE--EecCCCCceEeeecccccc
Q 008939 503 REGHIKIWMRPGVAESQS---SSSETVL--STSSKDKPLLSSKVVTSSY 546 (548)
Q Consensus 503 ~Dg~I~iW~~~~~~~~~~---~~~~~v~--~~s~d~~~l~s~~~~g~~~ 546 (548)
.|++|-||.......... -....|+ +|+|||-.|......|+++
T Consensus 302 qDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~ 350 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVA 350 (942)
T ss_pred CCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEE
Confidence 999999999643331111 1223344 8999999999998888764
No 96
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=7.2e-25 Score=217.13 Aligned_cols=276 Identities=14% Similarity=0.171 Sum_probs=222.3
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceE-EEecCCCCCCceEEEEEcCCcEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVC-HAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~-~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
..+|..-|..+++.+. ..++.++.| +++||+-.....-+.+.+..+.+-+.+ ++|.+. ++-.|++|+.|..|.+|
T Consensus 10 l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~--~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES--DKGRLVVGGMDTTIIVF 86 (745)
T ss_pred eccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccc--cCcceEeecccceEEEE
Confidence 4567777777776544 466677766 999999876554555666656666666 777762 35679999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
.+.+. .++... ..|+..|+|+....++. +++|+.|.++++|....
T Consensus 87 ~~~~~-----~P~~~L-------kgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~--------------------- 131 (745)
T KOG0301|consen 87 KLSQA-----EPLYTL-------KGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE--------------------- 131 (745)
T ss_pred ecCCC-----Cchhhh-------hccccceeeeecCCcCc--eEecccccceEEecchh---------------------
Confidence 98762 222111 24999999999877764 99999999999998764
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
....|++|+.+|.++++-|++ .+++|+.|.+|++|.- ++++.++.+|.+.|+.+++-+++ .++++++||
T Consensus 132 -------l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg 200 (745)
T KOG0301|consen 132 -------LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDG 200 (745)
T ss_pred -------hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCc
Confidence 244588999999999999987 8999999999999976 78888999999999999999886 478999999
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCc
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSP 443 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~ 443 (548)
.|++|++ +++++.++.+|++.|+++.... ++ ..++++++|++++||+.. ++.+.+..
T Consensus 201 ~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-------~~------~~Ivs~gEDrtlriW~~~--e~~q~I~l------- 257 (745)
T KOG0301|consen 201 SIRLWDL-DGEVLLEMHGHTNFVYSISMAL-------SD------GLIVSTGEDRTLRIWKKD--ECVQVITL------- 257 (745)
T ss_pred eEEEEec-cCceeeeeeccceEEEEEEecC-------CC------CeEEEecCCceEEEeecC--ceEEEEec-------
Confidence 9999999 7899999999999999999554 44 489999999999999976 67766654
Q ss_pred eecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCC
Q 008939 444 TFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRP 513 (548)
Q Consensus 444 ~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~ 513 (548)
..-.|+++.+-+++ |++|+.||.||||...
T Consensus 258 ----------------------------------------PttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 258 ----------------------------------------PTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred ----------------------------------------CccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 23467888877765 9999999999999865
No 97
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.6e-23 Score=200.40 Aligned_cols=354 Identities=17% Similarity=0.196 Sum_probs=258.5
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecC-----C----eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVG-----D----AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL 195 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~-----d----~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~ 195 (548)
...+|...+.++..+|+-..++++-. + .++|||-.+-. -+..+-+-...+.|++|++... |.+|+.-.
T Consensus 99 ~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~--TL~V~g~f~~GV~~vaFsk~~~-G~~l~~vD 175 (626)
T KOG2106|consen 99 HYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS--TLHVIGFFDRGVTCVAFSKING-GSLLCAVD 175 (626)
T ss_pred cccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce--eeeeeccccccceeeeecccCC-CceEEEec
Confidence 56789999999999998877775321 1 69999966533 5555556677999999999854 44444443
Q ss_pred cC--CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 196 NS--GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 196 ~d--g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
.. ..+.+||... +.+..... ..+..|....|+|.+.+++++++ .|.+++|+.+.+.-. ..
T Consensus 176 ~s~~h~lSVWdWqk-----~~~~~~vk-------~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~-k~---- 237 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQK-----KAKLGPVK-------TSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLV-KR---- 237 (626)
T ss_pred CCCccccchhhchh-----hhccCcce-------eccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceE-EE----
Confidence 32 3377898654 22221111 14677889999999996655554 589999998863211 11
Q ss_pred cccceeeeecCCCCCCCCeeEeeec-CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHIC-QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd 352 (548)
...+..+ +.-|.|++|.++|. +++|..+|.|.||+..+.+.......|.+.|.+++.-.+
T Consensus 238 ------------------~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~ 298 (626)
T KOG2106|consen 238 ------------------QGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD 298 (626)
T ss_pred ------------------eeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC
Confidence 1111111 25689999999986 789999999999999988887777799999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCce-----------eE-----------------------------EeccCCCCCeEEEEEe
Q 008939 353 GKYILTGGEDDLVQVWSMEDRK-----------VV-----------------------------AWGEGHNSWVSGVAFD 392 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~-----------~~-----------------------------~~~~~h~~~V~~v~~~ 392 (548)
|.+| +|+.|+.|..||-.-.+ .+ ...++|....+.++-+
T Consensus 299 Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h 377 (626)
T KOG2106|consen 299 GTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH 377 (626)
T ss_pred ccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC
Confidence 9755 59999999999832100 00 0124788888899999
Q ss_pred cCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeec
Q 008939 393 SYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDV 472 (548)
Q Consensus 393 p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~ 472 (548)
| +. .+++++++|+.++||+ ..+++.+.....+..++.|.+.+ .+++|+..+.--+.|.
T Consensus 378 p-------s~------~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-------~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 378 P-------SK------NQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-------VVAVGTATGRWFVLDT 435 (626)
T ss_pred C-------Ch------hheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-------eEEEeeccceEEEEec
Confidence 8 65 6899999999999999 66666666666777777777664 5677777777778888
Q ss_pred CCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcccc----CCCCcEE--EecCCCCceEeeecc
Q 008939 473 PKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQS----SSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 473 ~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~~----~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
.+...+..... .++++.|.|+|++ |+.|+.|+.|.|+.+........ .+...+. .+|+|+++|.+-...
T Consensus 436 e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 436 ETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred ccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCc
Confidence 88777766666 8999999999985 99999999999999876542211 1224444 889999999876544
No 98
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2.4e-24 Score=190.24 Aligned_cols=273 Identities=16% Similarity=0.182 Sum_probs=220.6
Q ss_pred EEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEE
Q 008939 168 SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 247 (548)
..+.+...+..++|+.+ |..|+.|+.|+.+.+|+++.. +.. .......|.+.|-.++|+|..+.+|+
T Consensus 15 ~~~~~~~~v~Sv~wn~~---g~~lasgs~dktv~v~n~e~~-----r~~-----~~~~~~gh~~svdql~w~~~~~d~~a 81 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCD---GTKLASGSFDKTVSVWNLERD-----RFR-----KELVYRGHTDSVDQLCWDPKHPDLFA 81 (313)
T ss_pred HhhhhhhcceEEEEccc---CceeeecccCCceEEEEecch-----hhh-----hhhcccCCCcchhhheeCCCCCcceE
Confidence 34456778999999999 888999999999999999862 111 22234458899999999999888999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd 327 (548)
+++.|.+|++||++.. +++.......+.| -+.|+|+|++++++..|..|.+.|
T Consensus 82 tas~dk~ir~wd~r~~--------------------------k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id 134 (313)
T KOG1407|consen 82 TASGDKTIRIWDIRSG--------------------------KCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFID 134 (313)
T ss_pred EecCCceEEEEEeccC--------------------------cEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEE
Confidence 9999999999999873 2222222222333 478999999999999999999999
Q ss_pred CCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 328 YSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 328 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
.++.+.+...+ ..-.+..+.|+-++.+++.-...|.|.|.....-+++..+++|.....||.|+| +|
T Consensus 135 ~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-------~G----- 201 (313)
T KOG1407|consen 135 ARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-------DG----- 201 (313)
T ss_pred ecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECC-------CC-----
Confidence 99888776654 345678899998888877777789999999999999999999999999999999 99
Q ss_pred eEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC
Q 008939 408 MYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP 487 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~ 487 (548)
++|++|+.|..+.|||+..--|++.+. -+.-+
T Consensus 202 -ryfA~GsADAlvSLWD~~ELiC~R~is-----------------------------------------------Rldwp 233 (313)
T KOG1407|consen 202 -RYFATGSADALVSLWDVDELICERCIS-----------------------------------------------RLDWP 233 (313)
T ss_pred -ceEeeccccceeeccChhHhhhheeec-----------------------------------------------cccCc
Confidence 899999999999999998766555443 36778
Q ss_pred eeEEEEeCCe--EEEEECCCeEEEEeCCCCC-ccccCCCCcEE--EecCCCCceEeeec
Q 008939 488 LSGLIFTQES--VLTVCREGHIKIWMRPGVA-ESQSSSSETVL--STSSKDKPLLSSKV 541 (548)
Q Consensus 488 V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~-~~~~~~~~~v~--~~s~d~~~l~s~~~ 541 (548)
|+.|.|+.|+ |++|++|..|-|=+++++. ..+.++..+.. ++.|..-+||.+-.
T Consensus 234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 234 VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred eEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEec
Confidence 9999999984 9999999999998888766 34445554444 78898888887643
No 99
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.9e-23 Score=178.06 Aligned_cols=286 Identities=20% Similarity=0.299 Sum_probs=214.4
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc------ccccceeeeeeeccCCcccCcceEEEE
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ------DVGKKLVGAHHYNKDGSVNNSRCTSVT 237 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~l~ 237 (548)
+.|..+. ....+..++|.|. |.+.++|+...+++|........ ....+.. . .-+..+.|++.|+|.+
T Consensus 24 ~~i~~l~-dsqairav~fhp~---g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~--v-~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 24 EAINILE-DSQAIRAVAFHPA---GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPS--V-LCKRNKHHKGSIYCTA 96 (350)
T ss_pred EEEEEec-chhheeeEEecCC---CceEEeccCCceEEEEccccccCcccccccccCCCe--E-EeeeccccCccEEEEE
Confidence 3444444 3457889999999 88999999999988775433110 0111101 1 1112335899999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC----CCE
Q 008939 238 WVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD----GTY 313 (548)
Q Consensus 238 ~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~----g~~ 313 (548)
|+|+|+ +|++|+.|.+|++..++.+.. ....+-..+..|.+.|..++|-.+ +.+
T Consensus 97 ws~~ge-liatgsndk~ik~l~fn~dt~---------------------~~~g~dle~nmhdgtirdl~fld~~~s~~~i 154 (350)
T KOG0641|consen 97 WSPCGE-LIATGSNDKTIKVLPFNADTC---------------------NATGHDLEFNMHDGTIRDLAFLDDPESGGAI 154 (350)
T ss_pred ecCccC-eEEecCCCceEEEEecccccc---------------------cccCcceeeeecCCceeeeEEecCCCcCceE
Confidence 999999 999999999999988765321 112344567889999999999643 457
Q ss_pred EEEEE-CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC--C-----CCC
Q 008939 314 LATVG-RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG--H-----NSW 385 (548)
Q Consensus 314 l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~--h-----~~~ 385 (548)
|++++ .|..|.+-|..+++....+.+|.+.|.++ ++=++-.+++|+.|.+|++||++-..++.++.. | .+.
T Consensus 155 l~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa 233 (350)
T KOG0641|consen 155 LASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA 233 (350)
T ss_pred EEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence 77765 46778888888999999999999999887 344577899999999999999998888877641 2 368
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQP 465 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~ 465 (548)
|.+++.+| .| ++|+++-.|....+||++.++.++.+
T Consensus 234 vaav~vdp-------sg------rll~sg~~dssc~lydirg~r~iq~f------------------------------- 269 (350)
T KOG0641|consen 234 VAAVAVDP-------SG------RLLASGHADSSCMLYDIRGGRMIQRF------------------------------- 269 (350)
T ss_pred eEEEEECC-------Cc------ceeeeccCCCceEEEEeeCCceeeee-------------------------------
Confidence 99999999 88 89999999999999999988766543
Q ss_pred CCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCcccc------CCCCcEE--EecCCCCc
Q 008939 466 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQS------SSSETVL--STSSKDKP 535 (548)
Q Consensus 466 ~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~~------~~~~~v~--~~s~d~~~ 535 (548)
..|...|.++.|+|. +++|++.|..|++-|+.+....+. .|...++ .|.|++-.
T Consensus 270 ----------------~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~s 333 (350)
T KOG0641|consen 270 ----------------HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFS 333 (350)
T ss_pred ----------------CCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccce
Confidence 458999999999996 699999999999999988653222 4555444 56666654
Q ss_pred eEee
Q 008939 536 LLSS 539 (548)
Q Consensus 536 l~s~ 539 (548)
+++.
T Consensus 334 fiss 337 (350)
T KOG0641|consen 334 FISS 337 (350)
T ss_pred eeec
Confidence 4444
No 100
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.4e-24 Score=192.80 Aligned_cols=302 Identities=21% Similarity=0.249 Sum_probs=216.2
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
+..+..|..+++|++|+.+ |..|++++.|+.|++|+++...+...+-+... ..-+-.+.+.|.||...+
T Consensus 79 ~~~LKgH~~~vt~~~FsSd---GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--------ve~dhpT~V~FapDc~s~ 147 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSD---GKKLATISGDRSIRLWDVRDFENKEHRCIRQN--------VEYDHPTRVVFAPDCKSV 147 (420)
T ss_pred hhhhhccCCceeeeEEcCC---CceeEEEeCCceEEEEecchhhhhhhhHhhcc--------ccCCCceEEEECCCcceE
Confidence 4566779999999999999 78899999999999999987544333322211 123466899999999866
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 325 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~v 325 (548)
+++.....++++|-+.+.......++.... .-...-+.|+-.|-.+-.-.++++|++++.|..|.+
T Consensus 148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~--------------D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l 213 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHI--------------DNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL 213 (420)
T ss_pred EEEEccCCEEEEEEeeecccCCCCcccccc--------------cccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence 777777789999988664333222222211 111122345667777777778899999999999999
Q ss_pred EeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC---Cc-----eeEEeccCCCCCeEEEEEecCCCC
Q 008939 326 FDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME---DR-----KVVAWGEGHNSWVSGVAFDSYWSQ 397 (548)
Q Consensus 326 wd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~---~~-----~~~~~~~~h~~~V~~v~~~p~~~~ 397 (548)
|+++ |+++..+......-+..+.||+|++|++++---.|++|.+- +| ..+..++||.+.|..++|++
T Consensus 214 w~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn---- 288 (420)
T KOG2096|consen 214 WDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN---- 288 (420)
T ss_pred EecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC----
Confidence 9998 88888887776777788999999999999999999999863 22 24567889999999999998
Q ss_pred CCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCc
Q 008939 398 PNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSP 477 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~ 477 (548)
+. .++++.+.||.++|||+.-.... ..++. .+..|. .|
T Consensus 289 ---~S------~r~vtvSkDG~wriwdtdVrY~~---~qDpk-----------------~Lk~g~-------------~p 326 (420)
T KOG2096|consen 289 ---SS------TRAVTVSKDGKWRIWDTDVRYEA---GQDPK-----------------ILKEGS-------------AP 326 (420)
T ss_pred ---Cc------ceeEEEecCCcEEEeeccceEec---CCCch-----------------HhhcCC-------------cc
Confidence 87 79999999999999998642211 00000 000000 01
Q ss_pred eEEeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCc---cccCCCCcEE--EecCCCCceEeeecc
Q 008939 478 LVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAE---SQSSSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 478 ~~~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~---~~~~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
+. ....+++ .++.+|++ ++..+.-..|+++.-+.++. ...-|.+.+. +++++|+++++.+..
T Consensus 327 l~--aag~~p~-RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 327 LH--AAGSEPV-RLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR 394 (420)
T ss_pred hh--hcCCCce-EEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce
Confidence 11 1123455 78999986 77777778899888766552 2335666666 777999999988653
No 101
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.5e-25 Score=196.49 Aligned_cols=246 Identities=17% Similarity=0.216 Sum_probs=208.1
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.|-+|.+.|-.+..+.+....++++.| +-+|||.-++. .+.++. |+.-+..++|+.+ .++|++|+.+.-+++|
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgd--elhsf~-hkhivk~~af~~d---s~~lltgg~ekllrvf 127 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGD--ELHSFE-HKHIVKAVAFSQD---SNYLLTGGQEKLLRVF 127 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhh--hhhhhh-hhheeeeEEeccc---chhhhccchHHHhhhh
Confidence 577899999999999999999999999 99999998866 888887 7789999999999 7789999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
|+.....++ ++...|.+.|..+.|+...+ .|+++..|++|++||.+++.
T Consensus 128 dln~p~App-----------~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt------------------- 176 (334)
T KOG0278|consen 128 DLNRPKAPP-----------KEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGT------------------- 176 (334)
T ss_pred hccCCCCCc-----------hhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCc-------------------
Confidence 998632111 12235899999999999888 88888999999999999732
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
.++.+.. ..+|+++.++++|++|.++ ..+.|.+||..+-.++..++- ...|.+..++|+...+++|++|.
T Consensus 177 -------~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~ 246 (334)
T KOG0278|consen 177 -------EVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDF 246 (334)
T ss_pred -------EEEEEec-CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcce
Confidence 2222222 2679999999999877666 456899999998888877653 35688999999999999999999
Q ss_pred eEEEEECCCceeEEec-cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 364 LVQVWSMEDRKVVAWG-EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
.++.||..+++.+..+ ++|-++|.||.|+| || ...++|++||+|+||....++.
T Consensus 247 ~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-------dG------E~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 247 KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-------DG------ELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEEEEeccCCceeeecccCCCCceEEEEECC-------CC------ceeeccCCCceEEEEEecCCCc
Confidence 9999999999988886 89999999999999 99 6899999999999999876553
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.7e-24 Score=213.02 Aligned_cols=262 Identities=15% Similarity=0.147 Sum_probs=207.8
Q ss_pred CCCCEEEEecCC-eEEEEEccCCCCC----CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccc
Q 008939 140 GKGTYIIFNVGD-AIFISDLNSQDKD----PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK 214 (548)
Q Consensus 140 ~~g~~l~~~~~d-~v~vwd~~~~~~~----~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~ 214 (548)
|.++++.+++.| .|++|++.....+ .+.+++.|.+-+..++...+ ++.|++++.|-+|.+|+..... ..-.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~---~~tlIS~SsDtTVK~W~~~~~~-~~c~ 110 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN---GKTLISASSDTTVKVWNAHKDN-TFCM 110 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC---CCceEEecCCceEEEeecccCc-chhH
Confidence 456678888888 9999998764432 36677778877777777777 6679999999999999987621 0111
Q ss_pred ceeeeeeeccCCcccCcceEEEEE-ecCCCcEEEEEeCCCcEEEEEcCCCCC-CCCCcccccccceeeeecCCCCCCCCe
Q 008939 215 KLVGAHHYNKDGSVNNSRCTSVTW-VPGGDGAFVVGHADGNLYVYEKSKDGA-GDSSFPVIKDQTQFSVAHPRYSKSNPI 292 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~v~~l~~-~p~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (548)
.. ..-|.+-|.|++. .++.+ ++|+|+-|+.|.+||++.... ....+. .-+.
T Consensus 111 st---------ir~H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n-----------------~~t~ 163 (735)
T KOG0308|consen 111 ST---------IRTHKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTATLVASFN-----------------NVTV 163 (735)
T ss_pred hh---------hhcccchheeeeecccCce-eEEecCCCccEEEEEccCcchhhhhhcc-----------------cccc
Confidence 11 1138999999999 66666 999999999999999987422 111111 1112
Q ss_pred eEee-ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 008939 293 ARWH-ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME 371 (548)
Q Consensus 293 ~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~ 371 (548)
..+- ++..+|++++.++.|..|++|+..+.|++||.++.+.+..+++|...|.++..++||..+++++.|++|++||+.
T Consensus 164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG 243 (735)
T ss_pred ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence 2222 677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC-CeEEeeeecCCCCCCcee
Q 008939 372 DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM-DEIVVPLRRGPLGGSPTF 445 (548)
Q Consensus 372 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~ 445 (548)
..+++.++..|...|+++..+| += ..+.+|+.|+.|..=|+++ .++...++.+.++..+..
T Consensus 244 qQrCl~T~~vH~e~VWaL~~~~-------sf------~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~ 305 (735)
T KOG0308|consen 244 QQRCLATYIVHKEGVWALQSSP-------SF------THVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHL 305 (735)
T ss_pred ccceeeeEEeccCceEEEeeCC-------Cc------ceEEecCCCCcEEecccCCchhheEeecCCCchhhhhh
Confidence 9999999999999999999987 54 6899999999999999998 444444444444444433
No 103
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=3.8e-24 Score=191.83 Aligned_cols=298 Identities=17% Similarity=0.242 Sum_probs=220.9
Q ss_pred ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeee-e--eeccCCcccCcceEEEEEecCCCcEE
Q 008939 170 HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGA-H--HYNKDGSVNNSRCTSVTWVPGGDGAF 246 (548)
Q Consensus 170 ~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~-~--~~~~~~~~~~~~v~~l~~~p~~~~~l 246 (548)
.-|...|..+...+. +++++++|+.||.|.+||++........-++.. . --......|+-.|.++.|-|-+..+|
T Consensus 40 r~HgGsvNsL~id~t--egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLT--EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred ccCCCccceeeeccc--cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 346678888888887 488999999999999999987432111111110 0 01123345899999999999888799
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC---CCEEEEEECCCeE
Q 008939 247 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD---GTYLATVGRDGYL 323 (548)
Q Consensus 247 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~---g~~l~s~~~dg~v 323 (548)
.+++.|.+++|||.++-. . ...|. -++.|..-+++|- ..++|+|..|-.|
T Consensus 118 tssSFDhtlKVWDtnTlQ-~-------------------------a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~V 170 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQ-E-------------------------AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQV 170 (397)
T ss_pred ecccccceEEEeecccce-e-------------------------eEEee-cCceeehhhcChhhhcceEEEEecCCCcE
Confidence 999999999999998721 1 11111 1267888888882 4578899999999
Q ss_pred EEEeCCCCeEEEeeeecCCceEEEEEccCCCE-EEEEeCCCeEEEEECCCc-eeEEe--------------ccCCCCCeE
Q 008939 324 RVFDYSKEQLICGGKSYYGALLCCAWSMDGKY-ILTGGEDDLVQVWSMEDR-KVVAW--------------GEGHNSWVS 387 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~-l~sgs~dg~I~vwd~~~~-~~~~~--------------~~~h~~~V~ 387 (548)
++.|+..|..-+++.+|.+.|.++.|+|..++ |++|+.||.|++||++.- .+... -..|.+.|.
T Consensus 171 rLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn 250 (397)
T KOG4283|consen 171 RLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN 250 (397)
T ss_pred EEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee
Confidence 99999999999999999999999999998885 788999999999999753 22222 235788999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC---CCCCCceecCCCCccccCCeeeecccC
Q 008939 388 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG---PLGGSPTFSTGSQSAHWDNVCPVGTLQ 464 (548)
Q Consensus 388 ~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~~~g~~~ 464 (548)
+++|.. || .++++++.|..+++|+...|+-...-..+ ..-..+.+... ....+..+ ....+
T Consensus 251 gla~tS-------d~------~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~--~~~s~vfv-~~p~~ 314 (397)
T KOG4283|consen 251 GLAWTS-------DA------RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ--SMDSDVFV-LFPND 314 (397)
T ss_pred eeeecc-------cc------hhhhhccCccceEEeecccCcccccccccccccccccceEEEe--ecccceEE-EEecC
Confidence 999998 99 79999999999999999988643211110 11122222211 12222222 22223
Q ss_pred CCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeC
Q 008939 465 PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMR 512 (548)
Q Consensus 465 ~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~ 512 (548)
..+.+..+-.++.+..+..|-..|.+.+|.|+. +.++..|+.|..|-.
T Consensus 315 ~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 315 GSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 667778888888999999999999999999985 999999999999975
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.2e-25 Score=217.21 Aligned_cols=240 Identities=19% Similarity=0.279 Sum_probs=200.6
Q ss_pred CCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 008939 185 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 264 (548)
Q Consensus 185 ~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~ 264 (548)
...+++|++|+.||.|++|++......+..+ +....+.|.+.|+++....+++ .|++++.|-+|++|+...+.
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~------~~asme~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTP------YIASMEHHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccc------hhhhhhhhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCc
Confidence 3347789999999999999998743222222 1122235899999999999998 89999999999999988632
Q ss_pred CCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE-CCCCCEEEEEECCCeEEEEeCCCC--eEEEe-----
Q 008939 265 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF-STDGTYLATVGRDGYLRVFDYSKE--QLICG----- 336 (548)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-sp~g~~l~s~~~dg~v~vwd~~~~--~~~~~----- 336 (548)
.-.+..+..|..-|.|+++ -++..++|+|+.|+.|.+||++++ +++..
T Consensus 107 ------------------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 107 ------------------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred ------------------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 1234556778899999999 778889999999999999999977 23322
Q ss_pred ---ee-ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 337 ---GK-SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 337 ---~~-~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
+. ++...|++++..+.|..|++|+.++.|++||.++++.+..++||...|..+..++ || .+++
T Consensus 163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d-------DG------t~~l 229 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-------DG------TRLL 229 (735)
T ss_pred cccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC-------CC------CeEe
Confidence 22 6778999999999999999999999999999999999999999999999999999 99 7999
Q ss_pred EEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEE
Q 008939 413 SVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLI 492 (548)
Q Consensus 413 s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~ 492 (548)
+++.||+|++||+...+|+.++. .|.+.|+++.
T Consensus 230 s~sSDgtIrlWdLgqQrCl~T~~-----------------------------------------------vH~e~VWaL~ 262 (735)
T KOG0308|consen 230 SASSDGTIRLWDLGQQRCLATYI-----------------------------------------------VHKEGVWALQ 262 (735)
T ss_pred ecCCCceEEeeeccccceeeeEE-----------------------------------------------eccCceEEEe
Confidence 99999999999999888776543 5888899999
Q ss_pred EeCC--eEEEEECCCeEEEEeCCCC
Q 008939 493 FTQE--SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 493 fspd--~l~t~s~Dg~I~iW~~~~~ 515 (548)
.+|+ .+.+|+.||.|..=|+...
T Consensus 263 ~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 263 SSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eCCCcceEEecCCCCcEEecccCCc
Confidence 9986 4899999999999888774
No 105
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.8e-24 Score=191.73 Aligned_cols=247 Identities=16% Similarity=0.274 Sum_probs=196.5
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
-..+..|.+++++++. ++.++++++.| +|+|||+.. ...+..+.-|.+.++++.|.+... ...|++|+.||.|.
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k--~~qlg~ll~HagsitaL~F~~~~S-~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK--RKQLGILLSHAGSITALKFYPPLS-KSHLLSGSDDGHII 110 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccc--hhhhcceeccccceEEEEecCCcc-hhheeeecCCCcEE
Confidence 3567789999999997 47999998888 999999998 448888888999999999999843 33799999999999
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
+|+... +...+. + +.|...|+.++.+|.+. +.++.+.|+.+++||+-.+ +....+.
T Consensus 111 iw~~~~--W~~~~s----l------K~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~G-r~a~v~~---------- 166 (362)
T KOG0294|consen 111 IWRVGS--WELLKS----L------KAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRG-RVAFVLN---------- 166 (362)
T ss_pred EEEcCC--eEEeee----e------cccccccceeEecCCCc-eEEEEcCCceeeeehhhcC-ccceeec----------
Confidence 999876 222221 1 24888899999999999 8889999999999999753 2111111
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~ 361 (548)
+. ..-+.+.|+|.|.+++.+..+ .|-||.+.+..+...+.. ...+.|+.|. ++..|++|++
T Consensus 167 -------------L~---~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d 227 (362)
T KOG0294|consen 167 -------------LK---NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGD 227 (362)
T ss_pred -------------cC---CcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecC
Confidence 11 223348999999999988876 589999987766544432 2457777776 5568999999
Q ss_pred CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 362 dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
|+.|++||.++..+...+.+|...|..+.+-- ++++ .+|++++.||.|++||+++.
T Consensus 228 ~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~-----~~~~------~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 228 NEWISLKDTDSDTPLTEFLAHENRVKDIASYT-----NPEH------EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CceEEEeccCCCccceeeecchhheeeeEEEe-----cCCc------eEEEEeccCceEEEEEcccc
Confidence 99999999999999999999999999998532 1156 79999999999999999987
No 106
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=4.9e-23 Score=182.48 Aligned_cols=273 Identities=14% Similarity=0.175 Sum_probs=210.4
Q ss_pred EecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEE
Q 008939 169 IHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV 248 (548)
Q Consensus 169 ~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s 248 (548)
+..|...++.+.|+.+ |.+|++++.|..+.+|--.+ ++.+-.. .+|.+.|+|+...-+.. .+++
T Consensus 6 l~GHERplTqiKyN~e---GDLlFscaKD~~~~vw~s~n-----GerlGty-------~GHtGavW~~Did~~s~-~liT 69 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNRE---GDLLFSCAKDSTPTVWYSLN-----GERLGTY-------DGHTGAVWCCDIDWDSK-HLIT 69 (327)
T ss_pred cccCccccceEEecCC---CcEEEEecCCCCceEEEecC-----Cceeeee-------cCCCceEEEEEecCCcc-eeee
Confidence 4456667778888887 88999999999999996543 3333222 25999999999999988 9999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-----CeE
Q 008939 249 GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-----GYL 323 (548)
Q Consensus 249 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-----g~v 323 (548)
|+.|.++++||+.++. .+..|+. ..+|..+.|+++|++++....+ +.|
T Consensus 70 GSAD~t~kLWDv~tGk--------------------------~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v 122 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGK--------------------------QLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFV 122 (327)
T ss_pred ccccceeEEEEcCCCc--------------------------EEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEE
Confidence 9999999999999732 2333332 2689999999999988877543 679
Q ss_pred EEEeCC-------CCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc-eeEEeccCCCCCeEEEEEecCC
Q 008939 324 RVFDYS-------KEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYW 395 (548)
Q Consensus 324 ~vwd~~-------~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~ 395 (548)
.++|++ ..++...+..+...++.+.|.|-+++|++|.+||.|.+||++++ +.+...+.|...|+.|+|+|
T Consensus 123 ~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-- 200 (327)
T KOG0643|consen 123 SVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-- 200 (327)
T ss_pred EEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC--
Confidence 999998 44557777778899999999999999999999999999999997 55667778999999999999
Q ss_pred CCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCC
Q 008939 396 SQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL 475 (548)
Q Consensus 396 ~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~ 475 (548)
|. .++++++.|.+-++||.++-+++.++..
T Consensus 201 -----d~------T~FiT~s~Dttakl~D~~tl~v~Kty~t--------------------------------------- 230 (327)
T KOG0643|consen 201 -----DR------TYFITGSKDTTAKLVDVRTLEVLKTYTT--------------------------------------- 230 (327)
T ss_pred -----Cc------ceEEecccCccceeeeccceeeEEEeee---------------------------------------
Confidence 88 7999999999999999999888877765
Q ss_pred CceEEeecCCCCeeEEEEeC--CeEEEEECCCeEEEE--eCCCCC--------------ccccCCCCcEE--EecCCCCc
Q 008939 476 SPLVAHRVHTEPLSGLIFTQ--ESVLTVCREGHIKIW--MRPGVA--------------ESQSSSSETVL--STSSKDKP 535 (548)
Q Consensus 476 ~~~~~~~~h~~~V~~l~fsp--d~l~t~s~Dg~I~iW--~~~~~~--------------~~~~~~~~~v~--~~s~d~~~ 535 (548)
..||++.+++| |.++.++.....-+= +-+.++ ....+|-.++. +++|||+.
T Consensus 231 ---------e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks 301 (327)
T KOG0643|consen 231 ---------ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS 301 (327)
T ss_pred ---------cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc
Confidence 45677777777 344443322221111 111111 12336666665 89999999
Q ss_pred eEeeeccccc
Q 008939 536 LLSSKVVTSS 545 (548)
Q Consensus 536 l~s~~~~g~~ 545 (548)
-++|+..|-+
T Consensus 302 YsSGGEDG~V 311 (327)
T KOG0643|consen 302 YSSGGEDGYV 311 (327)
T ss_pred cccCCCCceE
Confidence 9999887643
No 107
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.4e-23 Score=188.59 Aligned_cols=300 Identities=15% Similarity=0.233 Sum_probs=215.1
Q ss_pred CcccccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEE--ecCCCCceEEEecCCCCCCceEEEEE
Q 008939 119 SRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSI--HFSNSNPVCHAFDQDAKDGHDLLIGL 195 (548)
Q Consensus 119 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~--~~~~~~~~~~~~~p~~~~~~~l~~g~ 195 (548)
.+.+....-+|...|++++|+.||+++++.++| .|+||+++.-..+.-+.+ ...-+.++.++|.|+.+ -+++..
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~---s~vv~~ 151 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK---SVVVSV 151 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc---eEEEEE
Confidence 344556677999999999999999999999988 999999886322222222 22335889999999943 355555
Q ss_pred cC-CcEEEEEeeecccccccceeeeeeecc--CCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc
Q 008939 196 NS-GDVYSVSLRQQLQDVGKKLVGAHHYNK--DGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 196 ~d-g~I~iwdl~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
.. ..+++|.+..+. .+.-.....++.. -.+.|+..+-.+-...++. +|++++.|..|.+|++. ++.
T Consensus 152 ~~g~~l~vyk~~K~~--dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk--Gq~------ 220 (420)
T KOG2096|consen 152 KRGNKLCVYKLVKKT--DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK--GQL------ 220 (420)
T ss_pred ccCCEEEEEEeeecc--cCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC--Cce------
Confidence 44 569999887632 2332222222211 1122566777777777777 99999999999999997 322
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC---CC-----eEEEeeeecCCce
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS---KE-----QLICGGKSYYGAL 344 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~---~~-----~~~~~~~~~~~~v 344 (548)
+...+..+..-+..+.||+|++|++++..-.|+||.+- .| ..+..+++|...|
T Consensus 221 -------------------L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV 281 (420)
T KOG2096|consen 221 -------------------LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV 281 (420)
T ss_pred -------------------eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe
Confidence 22222223445668899999999999988889999873 22 2456789999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCc-------eeEEec----cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 008939 345 LCCAWSMDGKYILTGGEDDLVQVWSMEDR-------KVVAWG----EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413 (548)
Q Consensus 345 ~~l~~spdg~~l~sgs~dg~I~vwd~~~~-------~~~~~~----~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s 413 (548)
..++|+++.+.+++.+.||.++|||.+-. +.+... ..-.+.-..+..+| +| .++.
T Consensus 282 ~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-------~g-------~~lA 347 (420)
T KOG2096|consen 282 LAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-------SG-------DSLA 347 (420)
T ss_pred eeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-------CC-------cEEE
Confidence 99999999999999999999999998531 222222 12223334789999 88 3455
Q ss_pred EeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEE
Q 008939 414 VGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIF 493 (548)
Q Consensus 414 ~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~f 493 (548)
.+....|+++..++++....++. .|...|++|.|
T Consensus 348 ~s~gs~l~~~~se~g~~~~~~e~----------------------------------------------~h~~~Is~is~ 381 (420)
T KOG2096|consen 348 VSFGSDLKVFASEDGKDYPELED----------------------------------------------IHSTTISSISY 381 (420)
T ss_pred eecCCceEEEEcccCccchhHHH----------------------------------------------hhcCceeeEEe
Confidence 56667899999988876655544 58999999999
Q ss_pred eCCe-EEEEECCCeEEEEe
Q 008939 494 TQES-VLTVCREGHIKIWM 511 (548)
Q Consensus 494 spd~-l~t~s~Dg~I~iW~ 511 (548)
++++ .+..+.|..+++..
T Consensus 382 ~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 382 SSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred cCCCcEEeeecceeeeeec
Confidence 9986 66667788999887
No 108
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=5.1e-25 Score=202.68 Aligned_cols=269 Identities=15% Similarity=0.175 Sum_probs=223.5
Q ss_pred cccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 227 SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 227 ~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
.+|.+.|.|++=+|..-..+++|+.||.|++||+.. .+.+..++.|.+.|..++
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--------------------------R~~~~~f~AH~G~V~Gi~ 116 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--------------------------RECIRTFKAHEGLVRGIC 116 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhh--------------------------hhhhheeecccCceeeEE
Confidence 469999999999999855899999999999999986 567888999999999999
Q ss_pred ECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCe
Q 008939 307 FSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 386 (548)
Q Consensus 307 ~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V 386 (548)
++. ..+++++.|.+|+.|-+.- ..+.++.+ ...+..+.-+..+..+++|++ .|.|||.+-..++..+.--...|
T Consensus 117 v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti 190 (433)
T KOG0268|consen 117 VTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSI 190 (433)
T ss_pred ecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCce
Confidence 987 5789999999999999874 45666554 355777777777778899886 59999999888999988778889
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
.++.|+| ... ..|++|+.|+.|.|||++++.++..+-..-..+.+++.|.. -.+..++.|..
T Consensus 191 ~svkfNp-------vET-----sILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea------fnF~~a~ED~n 252 (433)
T KOG0268|consen 191 SSVKFNP-------VET-----SILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA------FNFVAANEDHN 252 (433)
T ss_pred eEEecCC-------Ccc-----hheeeeccCCceEEEecccCCccceeeeeccccceecCccc------cceeecccccc
Confidence 9999998 432 58999999999999999999998887766666777887743 34567888899
Q ss_pred CceeecCCC-CceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCccccCCC---CcEE--EecCCCCceEe
Q 008939 467 PSMRDVPKL-SPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQSSSS---ETVL--STSSKDKPLLS 538 (548)
Q Consensus 467 ~~~~d~~~~-~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~~~~~---~~v~--~~s~d~~~l~s 538 (548)
++.+|++.+ .|+..+++|...|.+|+|+|.+ +++||.|.+|||+....+.....-|. ..|. .+|.|.++|++
T Consensus 253 lY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~S 332 (433)
T KOG0268|consen 253 LYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIIS 332 (433)
T ss_pred ceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEe
Confidence 999999876 5899999999999999999976 99999999999999887654443332 2233 78999999999
Q ss_pred eeccccc
Q 008939 539 SKVVTSS 545 (548)
Q Consensus 539 ~~~~g~~ 545 (548)
|...+++
T Consensus 333 GSdd~nv 339 (433)
T KOG0268|consen 333 GSDDGNV 339 (433)
T ss_pred cCCCcce
Confidence 9887553
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=5.3e-24 Score=211.01 Aligned_cols=272 Identities=17% Similarity=0.277 Sum_probs=209.8
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEE-EEEecCCC
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTS-VTWVPGGD 243 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~p~~~ 243 (548)
.-+.+..|...+..+++.+. ..++.++.||++++|+-.. +....... ...+.+.|.+ +++.+..+
T Consensus 6 ls~~l~gH~~DVr~v~~~~~----~~i~s~sRd~t~~vw~~~~------~~~l~~~~----~~~~~g~i~~~i~y~e~~~ 71 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDG----VCIISGSRDGTVKVWAKKG------KQYLETHA----FEGPKGFIANSICYAESDK 71 (745)
T ss_pred eEEEeccCccchheeEecCC----eEEeecCCCCceeeeeccC------ccccccee----cccCcceeeccceeccccC
Confidence 34566778888877777664 3689999999999998654 22221110 1125566666 77776444
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
..+++|+.|.++.+|.+.. ..|+..+++|+..|.++....++. +++|+.|.++
T Consensus 72 ~~l~~g~~D~~i~v~~~~~--------------------------~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~Ta 124 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQ--------------------------AEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTA 124 (745)
T ss_pred cceEeecccceEEEEecCC--------------------------CCchhhhhccccceeeeecCCcCc-eEecccccce
Confidence 4799999999999999876 578999999999999999888877 9999999999
Q ss_pred EEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCC
Q 008939 324 RVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGT 403 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~ 403 (548)
++|-. +++...+++|...|.+++.-|++ .+++|+.|.+|++|.- ++.+.+|.+|.+.|+++++-| ++
T Consensus 125 kvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~-------~~- 191 (745)
T KOG0301|consen 125 KVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD-------DS- 191 (745)
T ss_pred EEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec-------CC-
Confidence 99976 56677799999999999999998 7899999999999976 778999999999999999998 65
Q ss_pred ccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 404 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 404 ~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
.|+||+.||.|++||+ +++++.+ +.+
T Consensus 192 ------~flScsNDg~Ir~w~~-~ge~l~~-----------------------------------------------~~g 217 (745)
T KOG0301|consen 192 ------HFLSCSNDGSIRLWDL-DGEVLLE-----------------------------------------------MHG 217 (745)
T ss_pred ------CeEeecCCceEEEEec-cCceeee-----------------------------------------------eec
Confidence 6999999999999999 6665543 346
Q ss_pred CCCCeeEEEEeC-C-eEEEEECCCeEEEEeCCCCCccccCCCCcEEEe--cCCCCceEeeeccccc
Q 008939 484 HTEPLSGLIFTQ-E-SVLTVCREGHIKIWMRPGVAESQSSSSETVLST--SSKDKPLLSSKVVTSS 545 (548)
Q Consensus 484 h~~~V~~l~fsp-d-~l~t~s~Dg~I~iW~~~~~~~~~~~~~~~v~~~--s~d~~~l~s~~~~g~~ 545 (548)
|+.-|+++...+ + .++++++|+++|||+............-.+++. -++|+ |++|...|.+
T Consensus 218 htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~V 282 (745)
T KOG0301|consen 218 HTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRV 282 (745)
T ss_pred cceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCC-EEEeccCceE
Confidence 899999999444 4 499999999999999873323333333355532 35666 5555555443
No 110
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=5.4e-25 Score=205.74 Aligned_cols=268 Identities=15% Similarity=0.190 Sum_probs=220.9
Q ss_pred ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
.|.+.|..+.|-++.. .|++|+.|..|++|++..+. ...+..+.+..+.|+.++|
T Consensus 173 ~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k------------------------~~~~~tLaGs~g~it~~d~ 227 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEK------------------------SELISTLAGSLGNITSIDF 227 (459)
T ss_pred ccccccceeEEccCcc-hhhhcchhhhhhhhhcccch------------------------hhhhhhhhccCCCcceeee
Confidence 3889999999999977 89999999999999987532 2334455566688999999
Q ss_pred CCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeE
Q 008939 308 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 387 (548)
Q Consensus 308 sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~ 387 (548)
.++++++++++.|+.+++|++...++..++.+|.+.|+++.|......+++|+.|.+|++||+....+..++. ..+.+.
T Consensus 228 d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cn 306 (459)
T KOG0288|consen 228 DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCN 306 (459)
T ss_pred cCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-cccccc
Confidence 9999999999999999999999999999999999999999999877779999999999999999988877765 455667
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCC
Q 008939 388 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAP 467 (548)
Q Consensus 388 ~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~ 467 (548)
.|...+ ..++++..|+.|++||+++..++..+..+..+.++..+.++ ..+....-|..+
T Consensus 307 DI~~~~---------------~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g------~~lLsssRDdtl 365 (459)
T KOG0288|consen 307 DIVCSI---------------SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDG------LELLSSSRDDTL 365 (459)
T ss_pred ceEecc---------------eeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCC------eEEeeecCCCce
Confidence 777655 57899999999999999999999999988888888888887 333344556677
Q ss_pred ceeecCCCCceEEeecC----CCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCcccc---CCCC-cEE--EecCCCCc
Q 008939 468 SMRDVPKLSPLVAHRVH----TEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQS---SSSE-TVL--STSSKDKP 535 (548)
Q Consensus 468 ~~~d~~~~~~~~~~~~h----~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~~---~~~~-~v~--~~s~d~~~ 535 (548)
.+.|++.......+..- ...++.+.|+|+ ++++|+.||.|+||++.+++.+.. .+.. .+. +|+|.|..
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 77788777666665531 234899999997 599999999999999998874322 2222 455 78899999
Q ss_pred eEeeecc
Q 008939 536 LLSSKVV 542 (548)
Q Consensus 536 l~s~~~~ 542 (548)
|++++..
T Consensus 446 Llsadk~ 452 (459)
T KOG0288|consen 446 LLSADKQ 452 (459)
T ss_pred hhcccCC
Confidence 9999876
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.2e-24 Score=186.91 Aligned_cols=239 Identities=19% Similarity=0.316 Sum_probs=184.7
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec--CCCcEEEEEeCCCcEEEEEcCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP--GGDGAFVVGHADGNLYVYEKSKDGA 265 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p--~~~~~l~s~~~dg~v~vwd~~~~~~ 265 (548)
|.+|+++++|+.|+|+.++...+ .++... ..+|.++|..++|.. .|. +|++++.||.|.||....+ +
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~---s~ll~~------L~Gh~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~g-~ 91 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQ---SKLLAE------LTGHSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEENG-R 91 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCC---ceeeeE------ecCCCCCeeEEeecccccCc-EeeEeecCceEEEEecCCC-c
Confidence 77899999999999999987321 122222 236999999999976 666 9999999999999997652 1
Q ss_pred CCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC--CCEEEEEECCCeEEEEeCCCC-e--EEEeeeec
Q 008939 266 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRDGYLRVFDYSKE-Q--LICGGKSY 340 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~~~dg~v~vwd~~~~-~--~~~~~~~~ 340 (548)
-+....+..|...|++++|-|. |-.|++++.||.|.|.+++.. . .......|
T Consensus 92 -----------------------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 92 -----------------------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred -----------------------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 2334566778999999999994 678999999999999999754 2 23346789
Q ss_pred CCceEEEEEccC---C-----------CEEEEEeCCCeEEEEECCCce--eEEeccCCCCCeEEEEEecCCCCCCCCCCc
Q 008939 341 YGALLCCAWSMD---G-----------KYILTGGEDDLVQVWSMEDRK--VVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 341 ~~~v~~l~~spd---g-----------~~l~sgs~dg~I~vwd~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
.-.|+++.|.|. | +.|++|+.|..|+||+..+++ ...+|++|.++|+.++|.|. .|
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~------~g-- 220 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS------VG-- 220 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc------cC--
Confidence 999999999995 4 569999999999999998864 44568999999999999993 22
Q ss_pred cceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecC
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH 484 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h 484 (548)
.....|+++++||++.||..+........ .+ +...
T Consensus 221 -l~~s~iAS~SqDg~viIwt~~~e~e~wk~-----------------------------------------tl---l~~f 255 (299)
T KOG1332|consen 221 -LPKSTIASCSQDGTVIIWTKDEEYEPWKK-----------------------------------------TL---LEEF 255 (299)
T ss_pred -CCceeeEEecCCCcEEEEEecCccCcccc-----------------------------------------cc---cccC
Confidence 12258999999999999987632111100 11 1124
Q ss_pred CCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 485 TEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 485 ~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
.+.+..+.|+..+ |+.++.|..|.+|.-.
T Consensus 256 ~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 256 PDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 5789999999964 8888999999999844
No 112
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=4.4e-23 Score=186.64 Aligned_cols=274 Identities=15% Similarity=0.164 Sum_probs=199.4
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
.+.|..+.|+|. +..|++++.||.+++||+... .+..... |..++.+++|.++. .+++|+.|
T Consensus 13 ~d~IS~v~f~~~---~~~LLvssWDgslrlYdv~~~------~l~~~~~-------~~~plL~c~F~d~~--~~~~G~~d 74 (323)
T KOG1036|consen 13 EDGISSVKFSPS---SSDLLVSSWDGSLRLYDVPAN------SLKLKFK-------HGAPLLDCAFADES--TIVTGGLD 74 (323)
T ss_pred hhceeeEEEcCc---CCcEEEEeccCcEEEEeccch------hhhhhee-------cCCceeeeeccCCc--eEEEeccC
Confidence 457889999977 678999999999999999873 1111122 78999999999876 49999999
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
|.|+.+|+... ....+..|..+|.|+.+++....+++|+.|++|++||.+...
T Consensus 75 g~vr~~Dln~~---------------------------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 75 GQVRRYDLNTG---------------------------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred ceEEEEEecCC---------------------------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc
Confidence 99999999873 233455678999999999987889999999999999999765
Q ss_pred EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec--cCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 333 LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG--EGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 333 ~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
.+..+.. ...|.|+... ++.|++|+.|..|.+||+++....... ..-+-.+++|++-| ++ .=
T Consensus 128 ~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-------n~------eG 191 (323)
T KOG1036|consen 128 VVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-------NG------EG 191 (323)
T ss_pred ccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-------CC------Cc
Confidence 5555543 3478887765 668999999999999999986543322 23456788999988 65 34
Q ss_pred EEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeE
Q 008939 411 FGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG 490 (548)
Q Consensus 411 l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~ 490 (548)
++.++-||.|.+=.++..+..+..+. +|-.-... ... ..---+|++
T Consensus 192 y~~sSieGRVavE~~d~s~~~~skky-------aFkCHr~~---------------------~~~------~~~~yPVNa 237 (323)
T KOG1036|consen 192 YVVSSIEGRVAVEYFDDSEEAQSKKY-------AFKCHRLS---------------------EKD------TEIIYPVNA 237 (323)
T ss_pred eEEEeecceEEEEccCCchHHhhhce-------eEEeeecc---------------------cCC------ceEEEEece
Confidence 78889999998877766533222111 11000000 000 001237999
Q ss_pred EEEeCC--eEEEEECCCeEEEEeCCCCCc-cccCCC-CcE--EEecCCCCceEeeec
Q 008939 491 LIFTQE--SVLTVCREGHIKIWMRPGVAE-SQSSSS-ETV--LSTSSKDKPLLSSKV 541 (548)
Q Consensus 491 l~fspd--~l~t~s~Dg~I~iW~~~~~~~-~~~~~~-~~v--~~~s~d~~~l~s~~~ 541 (548)
|+|+|- .|+||+.||.|.+||+..++. .+.... ..| ++|+.||..||.+..
T Consensus 238 i~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 238 IAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999995 499999999999999887663 333322 223 388899999998854
No 113
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-23 Score=200.12 Aligned_cols=256 Identities=17% Similarity=0.208 Sum_probs=206.5
Q ss_pred CEEEEec-CC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeee
Q 008939 143 TYIIFNV-GD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAH 220 (548)
Q Consensus 143 ~~l~~~~-~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~ 220 (548)
.+++++. .+ .|.+|.+.... .......-|..+.|++-+|. |.+|+.|+-.|.||+|.+.+ ++.+...
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~--~~~q~~v~Pg~v~al~s~n~---G~~l~ag~i~g~lYlWelss-----G~LL~v~- 119 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKD--QVVQYIVLPGPVHALASSNL---GYFLLAGTISGNLYLWELSS-----GILLNVL- 119 (476)
T ss_pred hheeeecccCccccccccCchh--hhhhhcccccceeeeecCCC---ceEEEeecccCcEEEEEecc-----ccHHHHH-
Confidence 4455543 44 89999998633 44333336778999999999 88999999999999999988 3332211
Q ss_pred eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 221 HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 221 ~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
..|-..|+|+.|+.|+. +|++|+.||.|.+|++..--... ....-.|++.|..|.-
T Consensus 120 ------~aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~-----------------~~~~~~p~~~f~~Htl 175 (476)
T KOG0646|consen 120 ------SAHYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSAD-----------------NDHSVKPLHIFSDHTL 175 (476)
T ss_pred ------HhhccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccc-----------------cCCCccceeeeccCcc
Confidence 13889999999999999 99999999999999986411100 0113578999999999
Q ss_pred CeEEEEECCC--CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC------
Q 008939 301 SINSIAFSTD--GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED------ 372 (548)
Q Consensus 301 ~v~~~~~sp~--g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~------ 372 (548)
+|+++...+. ..+|++++.|.++++||+..+.++.++. ....+.+++.+|-+..+++|+++|.|.+.++..
T Consensus 176 sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 176 SITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred eeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc
Confidence 9999998875 3589999999999999999999988765 457799999999999999999999999988743
Q ss_pred ----------ceeEEeccCCCC--CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee-cCCC
Q 008939 373 ----------RKVVAWGEGHNS--WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR-RGPL 439 (548)
Q Consensus 373 ----------~~~~~~~~~h~~--~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~-~~~~ 439 (548)
+..+..+.||.+ .|+|++.+- || .+|++|+.||.|+|||+.+.++++++. ...+
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-------Dg------tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgp 321 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAIST-------DG------TLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGP 321 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEec-------Cc------cEEEeeCCCCCEEEEecchHHHHHHHhhhccc
Confidence 224556678988 999999998 99 899999999999999999999999887 5567
Q ss_pred CCCceecC
Q 008939 440 GGSPTFST 447 (548)
Q Consensus 440 ~~~~~~~~ 447 (548)
++.+.+.+
T Consensus 322 VtnL~i~~ 329 (476)
T KOG0646|consen 322 VTNLQINP 329 (476)
T ss_pred cceeEeec
Confidence 77776633
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=5.8e-23 Score=194.89 Aligned_cols=247 Identities=17% Similarity=0.215 Sum_probs=200.8
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCC---------------CeEEE-ecCCCCceEEEecCCCCC
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKD---------------PIKSI-HFSNSNPVCHAFDQDAKD 187 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~---------------~i~~~-~~~~~~~~~~~~~p~~~~ 187 (548)
-...|.-++++++++|++++.+.++.+ +|.=|++.++... ++..- ..|...+.|++.+++
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D--- 213 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD--- 213 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC---
Confidence 345789999999999999999998887 9999998776521 11111 145668899999999
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
+.+|++|..|..|.||+.++. ..+. ....|.+.|.+++|-.... .|++++.|..|++|+++.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~-----ehv~-------~~~ghr~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~----- 275 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTL-----EHVK-------VFKGHRGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQ----- 275 (479)
T ss_pred CcEEEecCCCceEEEecCccc-----chhh-------cccccccceeeeeeecCcc-ceeeeecCCceEEEehhH-----
Confidence 889999999999999999872 1111 1235899999999987666 899999999999999986
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEE
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCC 347 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 347 (548)
...+..+.+|+..|.++.-..-++.+-+|+.|+++++|++. .+....+.++.+.+-|+
T Consensus 276 ---------------------~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv 333 (479)
T KOG0299|consen 276 ---------------------LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCV 333 (479)
T ss_pred ---------------------hHHHHHHhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeE
Confidence 34567778899999999888777777778899999999995 33444678888899999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCceeEEecc-CC-----------CCCeEEEEEecCCCCCCCCCCccceeEEEEEEe
Q 008939 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GH-----------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415 (548)
Q Consensus 348 ~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-~h-----------~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~ 415 (548)
+|-.+ ..+++|+.||.|.+|++.+.+++.+.. +| ..||++|+..| .. .++++++
T Consensus 334 ~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-------~s------dL~asGS 399 (479)
T KOG0299|consen 334 AFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-------GS------DLLASGS 399 (479)
T ss_pred EEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-------cC------ceEEecC
Confidence 99865 578999999999999999988776553 22 23999999998 55 6999999
Q ss_pred CCCeEEEEECCCC
Q 008939 416 QDTRLLLWDLEMD 428 (548)
Q Consensus 416 ~Dg~i~lwd~~~~ 428 (548)
.+|+|+||-+..+
T Consensus 400 ~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 400 WSGCVRLWKIEDG 412 (479)
T ss_pred CCCceEEEEecCC
Confidence 9999999998876
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.7e-24 Score=212.23 Aligned_cols=235 Identities=13% Similarity=0.190 Sum_probs=186.2
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+.+|+|.....++|++++..|.|.+||+.... +...+..|..|+..+++++|++
T Consensus 87 ~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~-----------------------rnk~l~~f~EH~Rs~~~ldfh~ 143 (839)
T KOG0269|consen 87 FYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI-----------------------RNKLLTVFNEHERSANKLDFHS 143 (839)
T ss_pred eeehhhcccccchhhhheeecCCCcEEEEecCccc-----------------------cchhhhHhhhhccceeeeeecc
Confidence 34577899997777799999999999999998621 2344567788999999999998
Q ss_pred -CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCCc-eeEEeccCCCCCe
Q 008939 310 -DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWV 386 (548)
Q Consensus 310 -~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V 386 (548)
...+|++|++||+|++||++..+-..++.+....|+.++|+| .+..++++.+.|.+++||++.. ++...+.+|.++|
T Consensus 144 tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV 223 (839)
T KOG0269|consen 144 TEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV 223 (839)
T ss_pred CCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce
Confidence 567899999999999999999888888888888999999999 4568999999999999999875 5677888999999
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
.++.|+| ++ .+|||||.|+.|+|||+...+.-...
T Consensus 224 ~c~nwhP-------nr------~~lATGGRDK~vkiWd~t~~~~~~~~-------------------------------- 258 (839)
T KOG0269|consen 224 LCLNWHP-------NR------EWLATGGRDKMVKIWDMTDSRAKPKH-------------------------------- 258 (839)
T ss_pred EEEeecC-------CC------ceeeecCCCccEEEEeccCCCcccee--------------------------------
Confidence 9999999 88 79999999999999999865432111
Q ss_pred CceeecCCCCceEEeecCCCCeeEEEEeCCe---EEEEE--CCCeEEEEeCCCCCcccc---CCCCcEE--Eec-CCCCc
Q 008939 467 PSMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTVC--REGHIKIWMRPGVAESQS---SSSETVL--STS-SKDKP 535 (548)
Q Consensus 467 ~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~---l~t~s--~Dg~I~iW~~~~~~~~~~---~~~~~v~--~~s-~d~~~ 535 (548)
+. .-..+|..|.|.|++ |++++ .|-.|+|||+...-.+.. .|...+. +|- .|-..
T Consensus 259 -------------tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~ 324 (839)
T KOG0269|consen 259 -------------TI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRIN 324 (839)
T ss_pred -------------EE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCcee
Confidence 11 124689999999974 77776 788999999877653322 3444444 332 34456
Q ss_pred eEeeecccccc
Q 008939 536 LLSSKVVTSSY 546 (548)
Q Consensus 536 l~s~~~~g~~~ 546 (548)
|.+..+.|.++
T Consensus 325 l~s~sKD~tv~ 335 (839)
T KOG0269|consen 325 LWSCSKDGTVL 335 (839)
T ss_pred eEeecCccHHH
Confidence 77777666654
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.2e-23 Score=194.61 Aligned_cols=278 Identities=16% Similarity=0.111 Sum_probs=206.3
Q ss_pred ecCC--eEEEEEccCCCCCCeEEEecC-CCC-ceEEEecCCCCCCceEEEEEc-CCcEEEEEeeecccccccceeeeeee
Q 008939 148 NVGD--AIFISDLNSQDKDPIKSIHFS-NSN-PVCHAFDQDAKDGHDLLIGLN-SGDVYSVSLRQQLQDVGKKLVGAHHY 222 (548)
Q Consensus 148 ~~~d--~v~vwd~~~~~~~~i~~~~~~-~~~-~~~~~~~p~~~~~~~l~~g~~-dg~I~iwdl~~~~~~~~~~~~~~~~~ 222 (548)
.+.+ ++.+||++++. .+.++... ... -.+-+.. ..+++++.. ...|.+|.+....+...+ .
T Consensus 13 sS~d~~~~~~~dl~TGt--~~~~ykg~~~a~~~sl~~l~-----~~yllsaq~~rp~l~vw~i~k~~~~~q~-~------ 78 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGT--SLLQYKGSYLAQAASLTALN-----NEYLLSAQLKRPLLHVWEILKKDQVVQY-I------ 78 (476)
T ss_pred cCCCCcceeEEecCCCc--eeEEecCcccccchhhhhhc-----hhheeeecccCccccccccCchhhhhhh-c------
Confidence 4445 79999999976 33333322 111 1111222 235555544 346889988763222211 1
Q ss_pred ccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCe
Q 008939 223 NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI 302 (548)
Q Consensus 223 ~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 302 (548)
...++|.+++-+|.|. +|+.|...|+||+|.+.+ ...+..|..|=..|
T Consensus 79 -----v~Pg~v~al~s~n~G~-~l~ag~i~g~lYlWelss--------------------------G~LL~v~~aHYQ~I 126 (476)
T KOG0646|consen 79 -----VLPGPVHALASSNLGY-FLLAGTISGNLYLWELSS--------------------------GILLNVLSAHYQSI 126 (476)
T ss_pred -----ccccceeeeecCCCce-EEEeecccCcEEEEEecc--------------------------ccHHHHHHhhccce
Confidence 2578899999999998 777777999999999997 35567778888999
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEeCC---------CCeEEEeeeecCCceEEEEEccCC--CEEEEEeCCCeEEEEECC
Q 008939 303 NSIAFSTDGTYLATVGRDGYLRVFDYS---------KEQLICGGKSYYGALLCCAWSMDG--KYILTGGEDDLVQVWSME 371 (548)
Q Consensus 303 ~~~~~sp~g~~l~s~~~dg~v~vwd~~---------~~~~~~~~~~~~~~v~~l~~spdg--~~l~sgs~dg~I~vwd~~ 371 (548)
+|+.|+-|+.+|++++.||.|.+|++. +-+.++.+..|.-+|+.+...+-| .+|++.+.|.++++||+.
T Consensus 127 TcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS 206 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS 206 (476)
T ss_pred eEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEec
Confidence 999999999999999999999999873 235678889999999999887653 589999999999999999
Q ss_pred CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCc
Q 008939 372 DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQS 451 (548)
Q Consensus 372 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (548)
.+.++..+. ....+.+++.+| .+ ..+..|+.+|.|.+.++..-..... ...
T Consensus 207 ~g~LLlti~-fp~si~av~lDp-------ae------~~~yiGt~~G~I~~~~~~~~~~~~~-----~v~---------- 257 (476)
T KOG0646|consen 207 LGVLLLTIT-FPSSIKAVALDP-------AE------RVVYIGTEEGKIFQNLLFKLSGQSA-----GVN---------- 257 (476)
T ss_pred cceeeEEEe-cCCcceeEEEcc-------cc------cEEEecCCcceEEeeehhcCCcccc-----ccc----------
Confidence 999888876 678899999999 66 7899999999999998865321000 000
Q ss_pred cccCCeeeecccCCCCceeecCCCCceEEeecCCC--CeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 452 AHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTE--PLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 452 ~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~--~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
.+.+ ......+..+.+|.+ .|++++.+-|+ |++|+.||+++|||+....
T Consensus 258 ---------------~k~~-~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 258 ---------------QKGR-HEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred ---------------cccc-ccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 0000 012234556678988 99999999985 9999999999999987765
No 117
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=3.1e-21 Score=184.77 Aligned_cols=381 Identities=15% Similarity=0.191 Sum_probs=257.0
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEe----cCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIH----FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~----~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
...+.+..+.|.|.+..++...++ .+++|+++.+. .++... ..+..++|++|.+++ .+++|.++|.|.|
T Consensus 198 ~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~--l~k~~~~fek~ekk~Vl~v~F~eng----dviTgDS~G~i~I 271 (626)
T KOG2106|consen 198 TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGS--LVKRQGIFEKREKKFVLCVTFLENG----DVITGDSGGNILI 271 (626)
T ss_pred eccceEEEEEeccCCCcEEEEeCCceEEEEEccCCc--eEEEeeccccccceEEEEEEEcCCC----CEEeecCCceEEE
Confidence 446778899999998888877777 99999998765 222221 133689999999974 4899999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc--------c
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI--------K 274 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--------~ 274 (548)
|+... .++....+ .|.+.|.+++...+|. |++|+.|..|..||-+-.......+|.. +
T Consensus 272 w~~~~------~~~~k~~~------aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e 337 (626)
T KOG2106|consen 272 WSKGT------NRISKQVH------AHDGGVFSLCMLRDGT--LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAE 337 (626)
T ss_pred EeCCC------ceEEeEee------ecCCceEEEEEecCcc--EeecCccceEEeccccccccccccCchhcCCeeEEec
Confidence 99865 22221111 4899999999999996 7779999999999943221111111111 1
Q ss_pred ccceeeeecCC------CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEE
Q 008939 275 DQTQFSVAHPR------YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCA 348 (548)
Q Consensus 275 ~~~~~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~ 348 (548)
....+.+...+ ..........++|......++.+|+...+++++.|+.+++|+ ..+++.+.. ...++.|++
T Consensus 338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~ 414 (626)
T KOG2106|consen 338 GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECAD 414 (626)
T ss_pred CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEee
Confidence 11112222111 012333455678989999999999999999999999999999 556665544 457899999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 349 ~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
|+|.| .+|.|...|.-.+.|.++...+..-.. +.++++|+|+| +| .+|+.++.|+.|.||-+..+
T Consensus 415 fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-------~G------~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 415 FHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-------DG------AFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred ccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-------CC------CEEEEecCCCeEEEEEECCC
Confidence 99999 999999999999999999777766554 89999999999 99 79999999999999998765
Q ss_pred eEEee-ee--cCCCCCCceecCCCC---ccccCCeeeecccCC---CCceeecCCC--CceEEe----ecCCCCeeEEEE
Q 008939 429 EIVVP-LR--RGPLGGSPTFSTGSQ---SAHWDNVCPVGTLQP---APSMRDVPKL--SPLVAH----RVHTEPLSGLIF 493 (548)
Q Consensus 429 ~~~~~-~~--~~~~~~~~~~~~~~~---~~~~d~~~~~g~~~~---~~~~~d~~~~--~~~~~~----~~h~~~V~~l~f 493 (548)
..... +. ...++..+.++++++ ...-|..+..|.-.. ...+.|++-. .+..-+ ..|...|..++-
T Consensus 480 g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~r 559 (626)
T KOG2106|consen 480 GRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVAR 559 (626)
T ss_pred CcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhh
Confidence 43322 22 226677788888875 122222222221110 1112222111 111111 123334444444
Q ss_pred eC--CeEEEEECCCeEEEEeCCCCCc-----cccCCCCcEE--EecCCCCceEeeecccccc
Q 008939 494 TQ--ESVLTVCREGHIKIWMRPGVAE-----SQSSSSETVL--STSSKDKPLLSSKVVTSSY 546 (548)
Q Consensus 494 sp--d~l~t~s~Dg~I~iW~~~~~~~-----~~~~~~~~v~--~~s~d~~~l~s~~~~g~~~ 546 (548)
+. +.+++|.+.|+|+++..|-... +...|...+. +|.-++..|++.....|++
T Consensus 560 s~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~ 621 (626)
T KOG2106|consen 560 SHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIM 621 (626)
T ss_pred hhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEE
Confidence 44 3488888889999999775442 3335666665 7777777777666666554
No 118
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.8e-22 Score=180.85 Aligned_cols=240 Identities=19% Similarity=0.250 Sum_probs=191.3
Q ss_pred CceeEEeCCCCCEEEEecC--C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 132 SMTNTNFDGKGTYIIFNVG--D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~--d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
.+-.+.|-.....++.++. | +||.-++.+ .+-++.+..|...|..+..+|- +..+++++.|++|++||++..
T Consensus 58 G~~~~~Fth~~~~~i~sStk~d~tIryLsl~d--NkylRYF~GH~~~V~sL~~sP~---~d~FlS~S~D~tvrLWDlR~~ 132 (311)
T KOG1446|consen 58 GVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD--NKYLRYFPGHKKRVNSLSVSPK---DDTFLSSSLDKTVRLWDLRVK 132 (311)
T ss_pred cccEEEEecCCceEEEccCCCCCceEEEEeec--CceEEEcCCCCceEEEEEecCC---CCeEEecccCCeEEeeEecCC
Confidence 4456677665566665554 3 999999998 4599999999999999999999 678999999999999999962
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC-CCCCcccccccceeeeecCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA-GDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
+..... +...-..++|.|+|- +||++...+.|++||++.-++ +...+....
T Consensus 133 ------~cqg~l--------~~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~------------- 184 (311)
T KOG1446|consen 133 ------KCQGLL--------NLSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITD------------- 184 (311)
T ss_pred ------CCceEE--------ecCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCC-------------
Confidence 221111 344456789999998 888888888999999987422 222221110
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCce---EEEEEccCCCEEEEEeCCCe
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL---LCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v---~~l~~spdg~~l~sgs~dg~ 364 (548)
......+.+.|+|||++|+.++..+.+.+.|.-+|..+.++..+...- ....|+||++++++|+.||.
T Consensus 185 ---------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~ 255 (311)
T KOG1446|consen 185 ---------NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGT 255 (311)
T ss_pred ---------CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCc
Confidence 113678899999999999999999999999999999998888776543 57789999999999999999
Q ss_pred EEEEECCCceeEEeccC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 365 VQVWSMEDRKVVAWGEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
|++|+++++..+..+++ +..++.++.|+| ++..-++.+..+.+|=....
T Consensus 256 i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP---------------~~~mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 256 IHVWNLETGKKVAVLRGPNGGPVSCVRFNP---------------RYAMFVSASSNLVFWLPDED 305 (311)
T ss_pred EEEEEcCCCcEeeEecCCCCCCccccccCC---------------ceeeeeecCceEEEEecccc
Confidence 99999999999999998 799999999999 45555566788999976543
No 119
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=2.4e-22 Score=181.13 Aligned_cols=245 Identities=15% Similarity=0.204 Sum_probs=182.0
Q ss_pred CCCCceeEEeCCCCCEEE-EecCC-eEEEEEccCC-CCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 129 SSTSMTNTNFDGKGTYII-FNVGD-AIFISDLNSQ-DKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~-~~~~d-~v~vwd~~~~-~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
-..+|..++|+|....++ +++=| +||+|+++.. ...+ +...-++..+.|++|+.+ |..+++|+.|+++++|||
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsdd---gskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDD---GSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccC---CceEEeeccCCceEEEEc
Confidence 457788999999544444 55545 9999999873 3333 445557889999999998 788999999999999999
Q ss_pred eecccccccceeeeeeeccCCcccCcceEEEEEecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD-GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
.+. ++.... .|..+|.++.|.+... ..|++|+.|.+|+.||++..
T Consensus 102 ~S~------Q~~~v~-------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~--------------------- 147 (347)
T KOG0647|consen 102 ASG------QVSQVA-------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS--------------------- 147 (347)
T ss_pred cCC------Ceeeee-------ecccceeEEEEecCCCcceeEecccccceeecccCCC---------------------
Confidence 872 222222 2899999999987654 37899999999999999862
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee--eecCCceEEEEEccCCCEEEEEeCC
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~--~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
+++..++.. +.++++.. -..+++++..++.|.+|+++.+...... ....-.++|++..+|.+..+.|+-+
T Consensus 148 -----~pv~t~~LP-eRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 148 -----NPVATLQLP-ERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred -----Ceeeeeecc-ceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 334333332 44555544 3347888889999999999866432211 1123458899999999888999999
Q ss_pred CeEEEEECCCc--eeEEeccCCC---------CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEE
Q 008939 363 DLVQVWSMEDR--KVVAWGEGHN---------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 363 g~I~vwd~~~~--~~~~~~~~h~---------~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~ 431 (548)
|.+.|..++.+ +.-..|+.|. ..|..|+|+| .- ..|+++|.||...+||-.....+
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-------~h------gtlvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-------VH------GTLVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-------cc------ceEEEecCCceEEEecchhhhhh
Confidence 99999999886 3334555665 2578899999 32 38999999999999997765544
Q ss_pred e
Q 008939 432 V 432 (548)
Q Consensus 432 ~ 432 (548)
.
T Consensus 287 k 287 (347)
T KOG0647|consen 287 K 287 (347)
T ss_pred h
Confidence 3
No 120
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.7e-23 Score=199.85 Aligned_cols=269 Identities=20% Similarity=0.220 Sum_probs=210.4
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec--CCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC--QGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~ 306 (548)
|..-|..+.++.... .+++|+. |.|+|||+...+. ..|+..+..- ..-|.++.
T Consensus 418 HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~-----------------------k~PvsqLdcl~rdnyiRSck 472 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGN-----------------------KSPVSQLDCLNRDNYIRSCK 472 (705)
T ss_pred cCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCC-----------------------CCccccccccCcccceeeeE
Confidence 677788888888877 7888775 8899999976432 2223222221 36788999
Q ss_pred ECCCCCEEEEEECCCeEEEEeCCCCeEE--EeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCC
Q 008939 307 FSTDGTYLATVGRDGYLRVFDYSKEQLI--CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS 384 (548)
Q Consensus 307 ~sp~g~~l~s~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~ 384 (548)
+.|||+.|++|+.-.+|.|||+...... ..+..-.-...+++.+||.+..+++..||.|.|||+++...+..|+||.+
T Consensus 473 L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence 9999999999999999999999865443 22333334567889999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccC
Q 008939 385 WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQ 464 (548)
Q Consensus 385 ~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~ 464 (548)
.+.||..++ || +.|-+|+-|.+|+.||+++++.++......++.++-..+.+ ..+.+|-..
T Consensus 553 GascIdis~-------dG------tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~------dWlavGMen 613 (705)
T KOG0639|consen 553 GASCIDISK-------DG------TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTG------DWLAVGMEN 613 (705)
T ss_pred CceeEEecC-------CC------ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCc------cceeeeccc
Confidence 999999999 99 89999999999999999999988776665666666665554 334555555
Q ss_pred CCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCC-ccccCCCCcEE--EecCCCCceEee
Q 008939 465 PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA-ESQSSSSETVL--STSSKDKPLLSS 539 (548)
Q Consensus 465 ~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~-~~~~~~~~~v~--~~s~d~~~l~s~ 539 (548)
..+.+......+ ...+..|+..|.++.|.+- .+++.+.|..+..|..+-+. ..+......|+ .||.|+++|++|
T Consensus 614 s~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTG 692 (705)
T KOG0639|consen 614 SNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTG 692 (705)
T ss_pred CcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEec
Confidence 444444443332 3344568999999999995 49999999999999988665 55566667777 899999999998
Q ss_pred ecc
Q 008939 540 KVV 542 (548)
Q Consensus 540 ~~~ 542 (548)
.-.
T Consensus 693 SGd 695 (705)
T KOG0639|consen 693 SGD 695 (705)
T ss_pred CCC
Confidence 543
No 121
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=2.4e-22 Score=189.18 Aligned_cols=241 Identities=16% Similarity=0.212 Sum_probs=197.7
Q ss_pred CceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc
Q 008939 132 SMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ 210 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~ 210 (548)
.++.+...+....+.+++.| ++.++|...++ .+..+..|.-.++.+.|+|+ ...+++++.|-.|++|......
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q--~l~~~~Gh~kki~~v~~~~~---~~~v~~aSad~~i~vws~~~~s- 294 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQ--ILATLKGHTKKITSVKFHKD---LDTVITASADEIIRVWSVPLSS- 294 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhh--hhhhccCcceEEEEEEeccc---hhheeecCCcceEEeecccccc-
Confidence 34556666666788888888 99999999854 88888999999999999999 6679999999999999987521
Q ss_pred ccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCC
Q 008939 211 DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSN 290 (548)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (548)
...+ ...|..+|+.+..+|.++ +|++++.|++..+.|++.+....
T Consensus 295 --~~~~---------~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt----------------------- 339 (506)
T KOG0289|consen 295 --EPTS---------SRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLT----------------------- 339 (506)
T ss_pred --Cccc---------cccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEE-----------------------
Confidence 1111 113899999999999999 99999999999999998732110
Q ss_pred CeeEee-ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 008939 291 PIARWH-ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 369 (548)
Q Consensus 291 ~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd 369 (548)
..-. ...-.+++.+|+|||.+|.+|..|+.|+|||+..+..+..|.+|.++|..++|+.+|-+|+++.+|+.|++||
T Consensus 340 --~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 340 --VVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWD 417 (506)
T ss_pred --EEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEE
Confidence 0000 1124589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeccC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 370 MEDRKVVAWGEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 370 ~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
++..+...++.- ....|..+.|++ .| .+|+.++.|=+|++++-.+.
T Consensus 418 LRKl~n~kt~~l~~~~~v~s~~fD~-------SG------t~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 418 LRKLKNFKTIQLDEKKEVNSLSFDQ-------SG------TYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred ehhhcccceeeccccccceeEEEcC-------CC------CeEEeecceeEEEEEecccc
Confidence 998887776653 234799999998 88 78888888877777774443
No 122
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.6e-23 Score=200.38 Aligned_cols=305 Identities=17% Similarity=0.222 Sum_probs=228.2
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
++-+.+|.+.|.+++.+|.|.+|+.++.| +|+||.+.++. +|+.+.+. +.|.|++|+|.+. -..|+++... .+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR--cvr~~~~d-~~I~~vaw~P~~~-~~vLAvA~~~-~~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR--CVRTVQFD-SEIRSVAWNPLSD-LCVLAVAVGE-CVL 467 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce--EEEEEeec-ceeEEEEecCCCC-ceeEEEEecC-ceE
Confidence 67788999999999999999999999998 99999999966 99999865 4999999999964 3344444443 465
Q ss_pred EEEeeec---ccccccceee-----------eeeeccC----Cc-------ccCcceEEEEEecCCCcEEEEEeCC---C
Q 008939 202 SVSLRQQ---LQDVGKKLVG-----------AHHYNKD----GS-------VNNSRCTSVTWVPGGDGAFVVGHAD---G 253 (548)
Q Consensus 202 iwdl~~~---~~~~~~~~~~-----------~~~~~~~----~~-------~~~~~v~~l~~~p~~~~~l~s~~~d---g 253 (548)
|.+..-. .....+.++. ...|.+. .. .|...|+.|.|+..|. +|++...+ .
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~ 546 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNK 546 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCcc
Confidence 5553211 0001111111 1122222 11 2778999999999999 88887654 4
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL 333 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~ 333 (548)
.|.|+++.+... .. -|+...+.|.++.|+|...+|++++. ..|+|||+..+++
T Consensus 547 ~VliHQLSK~~s-Q~-------------------------PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel 599 (733)
T KOG0650|consen 547 SVLIHQLSKRKS-QS-------------------------PFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL 599 (733)
T ss_pred eEEEEecccccc-cC-------------------------chhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHH
Confidence 688999876211 11 12222378999999999888888875 5799999998888
Q ss_pred EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 334 ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 334 ~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
+..+......|..++.+|.|..|+.|+.|+.++.+|+.-. ++.++++-|...|+.|+||+ .= .+|+
T Consensus 600 vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-------ry------PLfa 666 (733)
T KOG0650|consen 600 VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-------RY------PLFA 666 (733)
T ss_pred HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-------cc------ceee
Confidence 8877777778999999999999999999999999999864 67888999999999999998 22 6899
Q ss_pred EEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC----e
Q 008939 413 SVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP----L 488 (548)
Q Consensus 413 s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~----V 488 (548)
+|+.||.+.|+.-.--. .+. .-+...|+..+++|... |
T Consensus 667 s~sdDgtv~Vfhg~VY~---Dl~-----------------------------------qnpliVPlK~L~gH~~~~~~gV 708 (733)
T KOG0650|consen 667 SGSDDGTVIVFHGMVYN---DLL-----------------------------------QNPLIVPLKRLRGHEKTNDLGV 708 (733)
T ss_pred eecCCCcEEEEeeeeeh---hhh-----------------------------------cCCceEeeeeccCceeecccce
Confidence 99999999988532100 000 00223467778888665 8
Q ss_pred eEEEEeCC--eEEEEECCCeEEEEe
Q 008939 489 SGLIFTQE--SVLTVCREGHIKIWM 511 (548)
Q Consensus 489 ~~l~fspd--~l~t~s~Dg~I~iW~ 511 (548)
..+.|+|. .|++++.||+|++|.
T Consensus 709 Ld~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 709 LDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred EeecccCCCceEEecCCCceEEeeC
Confidence 89999997 499999999999993
No 123
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.3e-22 Score=187.39 Aligned_cols=289 Identities=14% Similarity=0.235 Sum_probs=224.9
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCc-eEEEEEcCCcEEEEE
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGH-DLLIGLNSGDVYSVS 204 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~-~l~~g~~dg~I~iwd 204 (548)
....+.|+++.|+|.-..+++++-| +++||.++......++.+.+....+.+.+|.|+ |. .+++++.....+.||
T Consensus 210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~---G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN---GHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC---CceEEEecccceEEEEee
Confidence 3446788999999999999998877 999999998777889999999999999999998 55 899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+.+......+++. ......+.....+|+++ +|+..+..|.|.+....+. ..
T Consensus 287 le~ak~~k~~~~~---------g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~-el------------------ 337 (514)
T KOG2055|consen 287 LETAKVTKLKPPY---------GVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTK-EL------------------ 337 (514)
T ss_pred ccccccccccCCC---------CcccchhheeEecCCCC-eEEEcccCceEEeehhhhh-hh------------------
Confidence 9873222222221 11345677888899999 9999999999999987762 21
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCce--EEEEEccCCCEEEEEeCC
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL--LCCAWSMDGKYILTGGED 362 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v--~~l~~spdg~~l~sgs~d 362 (548)
+..++. .+.|..++|+.|++.|+.++.+|.|.+||++...++..+... +.| ++++.++++.+||+|++.
T Consensus 338 -------i~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~ 408 (514)
T KOG2055|consen 338 -------ITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDS 408 (514)
T ss_pred -------hheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCc
Confidence 111221 378999999999999999999999999999999888887643 333 567778999999999999
Q ss_pred CeEEEEECCC------ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe--CCCeEEEEECCCCeEEeee
Q 008939 363 DLVQVWSMED------RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG--QDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 363 g~I~vwd~~~------~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~--~Dg~i~lwd~~~~~~~~~~ 434 (548)
|.|.|||.++ .+++..+..-...|+.|.|+| |+ .+|+.++ .+..++|-.+.+...-..+
T Consensus 409 GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~-------d~------qiLAiaS~~~knalrLVHvPS~TVFsNf 475 (514)
T KOG2055|consen 409 GIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH-------DA------QILAIASRVKKNALRLVHVPSCTVFSNF 475 (514)
T ss_pred ceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc-------ch------hhhhhhhhccccceEEEeccceeeeccC
Confidence 9999999764 357777777788999999999 88 5666555 4667777766554322211
Q ss_pred ecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeC
Q 008939 435 RRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMR 512 (548)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~ 512 (548)
.. . ....+.|++|+|+|. +|+.|..+|.+.+|.+
T Consensus 476 P~--------------------------------------~------n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 476 PT--------------------------------------S------NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred CC--------------------------------------C------CCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 11 0 012356999999996 3899999999999987
Q ss_pred C
Q 008939 513 P 513 (548)
Q Consensus 513 ~ 513 (548)
.
T Consensus 512 ~ 512 (514)
T KOG2055|consen 512 H 512 (514)
T ss_pred c
Confidence 4
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.7e-24 Score=212.87 Aligned_cols=227 Identities=17% Similarity=0.304 Sum_probs=196.4
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
|...|.|+..-..++ .+++|+.|..+-+|.+.+ -+++..+.+|+.+|.++.|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~k--------------------------p~~i~S~~~hespIeSl~f~ 79 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGK--------------------------PNAITSLTGHESPIESLTFD 79 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccC--------------------------CchhheeeccCCcceeeecC
Confidence 788888888855556 899999999999999875 34556688999999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEE
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 388 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~ 388 (548)
++..+|++|+.+|+|++||+++.+.+.++.+|...+.++.|+|-+.+.+.|+.|..+++||++...|.+.+.+|...|..
T Consensus 80 ~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~ 159 (825)
T KOG0267|consen 80 TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV 159 (825)
T ss_pred cchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCc
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPS 468 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~ 468 (548)
+.|+| +| +++++++.|..++|||+..|+.+..+
T Consensus 160 l~lsP-------~G------r~v~~g~ed~tvki~d~~agk~~~ef---------------------------------- 192 (825)
T KOG0267|consen 160 LRLSP-------DG------RWVASGGEDNTVKIWDLTAGKLSKEF---------------------------------- 192 (825)
T ss_pred EeecC-------CC------ceeeccCCcceeeeeccccccccccc----------------------------------
Confidence 99999 99 89999999999999999988766544
Q ss_pred eeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCccccC--CCCcEE--EecCCCCceEeeecc
Q 008939 469 MRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQSS--SSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 469 ~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~~~--~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
..|++.|..+.|+|. .+++|+.|++|++||+++-+..-.. ....|. +|.|+++.+.+|-+.
T Consensus 193 -------------~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 193 -------------KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred -------------ccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 458899999999995 3889999999999999865432222 223333 788999888877543
No 125
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.5e-22 Score=183.20 Aligned_cols=204 Identities=18% Similarity=0.303 Sum_probs=177.6
Q ss_pred cccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 227 SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 227 ~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
.+|++.|+.++-....+ ++.+++.|.+.+||.+++ ...+..+.+|.+.|+++.
T Consensus 145 ~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Es--------------------------g~CL~~Y~GH~GSVNsik 197 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQP-ICGTASADHTARIWSLES--------------------------GACLATYTGHTGSVNSIK 197 (481)
T ss_pred cccccceeeehhhcCCc-ceeecccccceeEEeecc--------------------------ccceeeecccccceeeEE
Confidence 35899999999888777 999999999999999997 345777889999999999
Q ss_pred ECCCCCEEEEEECCCeEEEEeCC------C----------------------------------CeEEEeeeecCCceEE
Q 008939 307 FSTDGTYLATVGRDGYLRVFDYS------K----------------------------------EQLICGGKSYYGALLC 346 (548)
Q Consensus 307 ~sp~g~~l~s~~~dg~v~vwd~~------~----------------------------------~~~~~~~~~~~~~v~~ 346 (548)
|++.+.++++++.|++-.||... . ..+++.+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 99999999999999999999621 0 0134667889999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 347 CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 347 l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+.|-..|+.+++++.|.+..+||+++++++..+.||+...+.++-+| .. +++++.+.|.+.++||++
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-------tQ------rLVvTsSrDtTFRLWDFR 344 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-------TQ------RLVVTSSRDTTFRLWDFR 344 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-------cc------eEEEEeccCceeEeccch
Confidence 99999999999999999999999999999999999999999999998 66 789999999999999998
Q ss_pred CCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC-eEEEEECCC
Q 008939 427 MDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLTVCREG 505 (548)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd-~l~t~s~Dg 505 (548)
.. + ..+..|++|.+.|+++.|..+ .++++++|.
T Consensus 345 ea--I--------------------------------------------~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDr 378 (481)
T KOG0300|consen 345 EA--I--------------------------------------------QSVAVFQGHTDTVTSVVFNTDDRVVSGSDDR 378 (481)
T ss_pred hh--c--------------------------------------------ceeeeecccccceeEEEEecCCceeecCCCc
Confidence 32 2 224467899999999999986 599999999
Q ss_pred eEEEEeCCCCC
Q 008939 506 HIKIWMRPGVA 516 (548)
Q Consensus 506 ~I~iW~~~~~~ 516 (548)
+|++||+..-.
T Consensus 379 TvKvWdLrNMR 389 (481)
T KOG0300|consen 379 TVKVWDLRNMR 389 (481)
T ss_pred eEEEeeecccc
Confidence 99999976543
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2.8e-20 Score=182.62 Aligned_cols=287 Identities=16% Similarity=0.179 Sum_probs=200.8
Q ss_pred CEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceE-EEEEcCCcEEEEEeeecccccccceeeee
Q 008939 143 TYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDL-LIGLNSGDVYSVSLRQQLQDVGKKLVGAH 220 (548)
Q Consensus 143 ~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l-~~g~~dg~I~iwdl~~~~~~~~~~~~~~~ 220 (548)
..++++..+ .+++||+.++. .+..+..+ ..+.+++|+|+ +..+ +++..++.|++||+.+. + .....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~--~~~~~~~~-~~~~~l~~~~d---g~~l~~~~~~~~~v~~~d~~~~-----~-~~~~~ 69 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLE--VTRTFPVG-QRPRGITLSKD---GKLLYVCASDSDTIQVIDLATG-----E-VIGTL 69 (300)
T ss_pred cEEEEecCCCEEEEEECCCCc--eEEEEECC-CCCCceEECCC---CCEEEEEECCCCeEEEEECCCC-----c-EEEec
Confidence 455666666 99999998754 66666643 45788999998 6555 56677899999998762 1 11111
Q ss_pred eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 221 HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 221 ~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
. ....+..++|+|+++.+++++..|+.|++||+.... .+..+.. ..
T Consensus 70 ~-------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~--------------------------~~~~~~~-~~ 115 (300)
T TIGR03866 70 P-------SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRK--------------------------VLAEIPV-GV 115 (300)
T ss_pred c-------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCe--------------------------EEeEeeC-CC
Confidence 1 122356789999998444455678999999997521 1111211 13
Q ss_pred CeEEEEECCCCCEEEEEECCC-eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCceeEEe
Q 008939 301 SINSIAFSTDGTYLATVGRDG-YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~~~~~~ 378 (548)
.+.+++|+|++++++++..++ .+.+||..+++.+..... .....+++|+|++++|+++ ..++.|++||+++++.+..
T Consensus 116 ~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~ 194 (300)
T TIGR03866 116 EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK 194 (300)
T ss_pred CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee
Confidence 467899999999999988765 567889988877655432 3346789999999988655 4589999999999887766
Q ss_pred ccCCC-----C--CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCc
Q 008939 379 GEGHN-----S--WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQS 451 (548)
Q Consensus 379 ~~~h~-----~--~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (548)
+..+. . ....++|+| ||. ..+++.+.++.|.+||+++++.+..+........+.|++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~i~~s~-------dg~-----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~- 261 (300)
T TIGR03866 195 ITFEIPGVHPEAVQPVGIKLTK-------DGK-----TAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEK- 261 (300)
T ss_pred eeecccccccccCCccceEECC-------CCC-----EEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCC-
Confidence 54221 1 234688998 882 234555667789999999988877665545667778877763
Q ss_pred cccCCeeee-cccCCCCceeecCCCCceEEeecCCCCeeEEEEeC
Q 008939 452 AHWDNVCPV-GTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ 495 (548)
Q Consensus 452 ~~~d~~~~~-g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp 495 (548)
.+.. ...++.+.+||+...+.+..++.+. ..+.|+|+|
T Consensus 262 -----~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~ 300 (300)
T TIGR03866 262 -----YLLTTNGVSNDVSVIDVAALKVIKSIKVGR-LPWGVVVRP 300 (300)
T ss_pred -----EEEEEcCCCCeEEEEECCCCcEEEEEEccc-ccceeEeCC
Confidence 3333 3457788999999999888887654 448888875
No 127
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.6e-21 Score=176.20 Aligned_cols=275 Identities=12% Similarity=0.191 Sum_probs=190.2
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec--CCCcEEEEE
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP--GGDGAFVVG 249 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p--~~~~~l~s~ 249 (548)
|.+-+.|+.|++- |+.+++|+.|+.|.|||.+.. ...-.+.. .-+.|.+.|..|.|.+ .|+ +++++
T Consensus 12 h~DlihdVs~D~~---GRRmAtCSsDq~vkI~d~~~~--s~~W~~Ts------~Wrah~~Si~rV~WAhPEfGq-vvA~c 79 (361)
T KOG2445|consen 12 HKDLIHDVSFDFY---GRRMATCSSDQTVKIWDSTSD--SGTWSCTS------SWRAHDGSIWRVVWAHPEFGQ-VVATC 79 (361)
T ss_pred Ccceeeeeeeccc---CceeeeccCCCcEEEEeccCC--CCceEEee------eEEecCCcEEEEEecCccccc-eEEEE
Confidence 5677899999998 889999999999999997541 11111111 2235899999999965 345 99999
Q ss_pred eCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC--CCCEEEEEECCCeEEEEe
Q 008939 250 HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST--DGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 250 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~~~dg~v~vwd 327 (548)
+.|+++.||....... ... ...-.....+......|+.+.|.| -|-.||+++.||.||||+
T Consensus 80 S~Drtv~iWEE~~~~~-~~~----------------~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYE 142 (361)
T KOG2445|consen 80 SYDRTVSIWEEQEKSE-EAH----------------GRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYE 142 (361)
T ss_pred ecCCceeeeeeccccc-ccc----------------cceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEe
Confidence 9999999998742110 000 000112233344458999999999 477899999999999998
Q ss_pred CCCC------eEEEeee-------ecCCceEEEEEccC---CCEEEEEeCC-----CeEEEEECCCc----eeEEeccCC
Q 008939 328 YSKE------QLICGGK-------SYYGALLCCAWSMD---GKYILTGGED-----DLVQVWSMEDR----KVVAWGEGH 382 (548)
Q Consensus 328 ~~~~------~~~~~~~-------~~~~~v~~l~~spd---g~~l~sgs~d-----g~I~vwd~~~~----~~~~~~~~h 382 (548)
.-.- .+...++ .+..+..|+.|+|. .++||+|+.+ +.+.||..... ..+.++.+|
T Consensus 143 A~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~ 222 (361)
T KOG2445|consen 143 APDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH 222 (361)
T ss_pred cCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC
Confidence 7432 2223333 35567889999974 3578888766 47888876543 356778899
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecc
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 462 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~ 462 (548)
..+|+.|+|.| +- .....+|++++.|| |+||.++..... ++.+ .. ..++.
T Consensus 223 ~dpI~di~wAP-------n~--Gr~y~~lAvA~kDg-v~I~~v~~~~s~--i~~e-e~----~~~~~------------- 272 (361)
T KOG2445|consen 223 TDPIRDISWAP-------NI--GRSYHLLAVATKDG-VRIFKVKVARSA--IEEE-EV----LAPDL------------- 272 (361)
T ss_pred CCcceeeeecc-------cc--CCceeeEEEeecCc-EEEEEEeeccch--hhhh-cc----cCCCC-------------
Confidence 99999999999 43 23447899999999 999998753311 1100 00 00000
Q ss_pred cCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeC
Q 008939 463 LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMR 512 (548)
Q Consensus 463 ~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~ 512 (548)
+.++ ..+.+..+..|.+.|..+.|.-.+ |.+.+.||+||+|..
T Consensus 273 ------~~~l-~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 273 ------MTDL-PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred ------cccc-ceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 0010 123455667899999999999865 889999999999984
No 128
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=2.9e-22 Score=185.56 Aligned_cols=269 Identities=14% Similarity=0.254 Sum_probs=187.8
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceee--ee--eeccCCcccCcceEEEEEecCCCcEEEEE
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVG--AH--HYNKDGSVNNSRCTSVTWVPGGDGAFVVG 249 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~--~~--~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 249 (548)
..+..+.-++-+. ..+.++-+..|.|+||++...++.....-.. .. ...-...+|+..=+.|+|+|-....|++|
T Consensus 152 g~~NRvr~~~~~~-~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 152 GGINRVRVSRLGN-EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred cccceeeecccCC-cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 3445555555421 4466667778999999998754432111100 00 00011234888889999999555569999
Q ss_pred eCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeC
Q 008939 250 HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDY 328 (548)
Q Consensus 250 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~ 328 (548)
..-+.|++|...+ +.-... .. -+-+|+.+|..++||| ....|++|+.||+|+|||+
T Consensus 231 Dc~~~I~lw~~~~-g~W~vd-------------------~~---Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi 287 (440)
T KOG0302|consen 231 DCVKGIHLWEPST-GSWKVD-------------------QR---PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI 287 (440)
T ss_pred ccccceEeeeecc-Cceeec-------------------Cc---cccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence 9999999999876 221110 11 1334789999999999 4568999999999999999
Q ss_pred CCC---eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC---ceeEEeccCCCCCeEEEEEecCCCCCCCCC
Q 008939 329 SKE---QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED---RKVVAWGEGHNSWVSGVAFDSYWSQPNSDG 402 (548)
Q Consensus 329 ~~~---~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~---~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg 402 (548)
+.+ .++.. +.|.+.|+.|.|+.+-.+||+|+.||+++|||+++ +++++.|+-|..+|++|.|+|. +.
T Consensus 288 Rs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~------e~ 360 (440)
T KOG0302|consen 288 RSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH------ED 360 (440)
T ss_pred cCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc------cC
Confidence 987 34444 88999999999999988999999999999999986 5689999999999999999992 33
Q ss_pred CccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee
Q 008939 403 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR 482 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~ 482 (548)
..|++++.|.+|.|||+....-...... . ... .+-|++. +.++.++
T Consensus 361 ------s~iaasg~D~QitiWDlsvE~D~ee~~~-~--------------------a~~------~L~dlPp-QLLFVHq 406 (440)
T KOG0302|consen 361 ------SVIAASGEDNQITIWDLSVEADEEEIDQ-E--------------------AAE------GLQDLPP-QLLFVHQ 406 (440)
T ss_pred ------ceEEeccCCCcEEEEEeeccCChhhhcc-c--------------------ccc------chhcCCc-eeEEEec
Confidence 5899999999999999875332111100 0 000 0122221 2333333
Q ss_pred cCCCCeeEEEEeCC---eEEEEECCCeEE
Q 008939 483 VHTEPLSGLIFTQE---SVLTVCREGHIK 508 (548)
Q Consensus 483 ~h~~~V~~l~fspd---~l~t~s~Dg~I~ 508 (548)
+ +..|..|.|++. +|++.+.||.-.
T Consensus 407 G-Qke~KevhWH~QiPG~lvsTa~dGfnV 434 (440)
T KOG0302|consen 407 G-QKEVKEVHWHRQIPGLLVSTAIDGFNV 434 (440)
T ss_pred c-hhHhhhheeccCCCCeEEEecccceeE
Confidence 3 345899999985 589999998643
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=5e-22 Score=178.31 Aligned_cols=232 Identities=17% Similarity=0.196 Sum_probs=179.0
Q ss_pred ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
.|.+.|+.+...+....++++|+.||.|.|||+......+...-..+..-.. ....-..|+-.|..+.|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v-----------~~~h~~~Hky~iss~~W 109 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIV-----------AKQHENGHKYAISSAIW 109 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeec-----------cccCCccceeeeeeeEE
Confidence 4889999999999776699999999999999997633211111110000000 01122457789999999
Q ss_pred CC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC---CEEEEEeCCCeEEEEECCCceeEEeccCCC
Q 008939 308 ST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG---KYILTGGEDDLVQVWSMEDRKVVAWGEGHN 383 (548)
Q Consensus 308 sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg---~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~ 383 (548)
-| |.-++.+++.|.+++|||..+-+....++ ..+.|.+-+|+|-. -++|+|..|-.|++.|+..|..-+.+.||.
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 99 77789999999999999999998877776 56778899999843 478889999999999999999999999999
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC-eEEeeeecCCCCCCceecCCCCccccCCeeeecc
Q 008939 384 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD-EIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 462 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~ 462 (548)
+.|.+|.|+| ..+ ..|++++.||.|++||++.. .|...+..+...
T Consensus 189 ~~vlaV~Wsp-------~~e-----~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k---------------------- 234 (397)
T KOG4283|consen 189 DGVLAVEWSP-------SSE-----WVLATGSADGAIRLWDIRRASGCFRVLDQHNTK---------------------- 234 (397)
T ss_pred CceEEEEecc-------Cce-----eEEEecCCCceEEEEEeecccceeEEeecccCc----------------------
Confidence 9999999999 331 78999999999999999976 555555431100
Q ss_pred cCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 463 LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 463 ~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
....+..-..|.+.|++++|+.++ +++++.|..+++|+...+.
T Consensus 235 -----------~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 235 -----------RPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred -----------cCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 011122234689999999999975 9999999999999987665
No 130
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=4e-22 Score=196.01 Aligned_cols=297 Identities=17% Similarity=0.224 Sum_probs=203.5
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN 254 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~ 254 (548)
.+....|++.....+.|+++..+|.|.++|.+...-...+. -.+....|...|.++.|.| ++..|++++.|.+
T Consensus 51 pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~------~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT 123 (720)
T KOG0321|consen 51 PPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEER------QLKKPLAHKNAIFDLKWAP-GESLLVSASGDST 123 (720)
T ss_pred CCccccccCCCCccceEEEecCCCceeeecchhhhcchhhh------hhcccccccceeEeeccCC-CceeEEEccCCce
Confidence 44556777665557899999999999999988632221111 1122235999999999999 5549999999999
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCe-
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQ- 332 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~- 332 (548)
+++||+...+ ..-...+.+|++.|.+++|.| +...|++|+.||.|.|||++...
T Consensus 124 ~r~Wdvk~s~------------------------l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~ 179 (720)
T KOG0321|consen 124 IRPWDVKTSR------------------------LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV 179 (720)
T ss_pred eeeeeeccce------------------------eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccch
Confidence 9999998632 111234778999999999999 56789999999999999996322
Q ss_pred --------------------------EEEeeeecCCceEE---EEEccCCCEEEEEeC-CCeEEEEECCCceeEEec---
Q 008939 333 --------------------------LICGGKSYYGALLC---CAWSMDGKYILTGGE-DDLVQVWSMEDRKVVAWG--- 379 (548)
Q Consensus 333 --------------------------~~~~~~~~~~~v~~---l~~spdg~~l~sgs~-dg~I~vwd~~~~~~~~~~--- 379 (548)
.+...+.+...|.. +.+..|...||+++. |+.|+|||+++.......
T Consensus 180 d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~ 259 (720)
T KOG0321|consen 180 DALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR 259 (720)
T ss_pred hhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCC
Confidence 01111223344444 556678889999888 999999999875433222
Q ss_pred -----cCC---CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCc
Q 008939 380 -----EGH---NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQS 451 (548)
Q Consensus 380 -----~~h---~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (548)
.-| .-.+.++..+. .|. +++|+| .|+.|.+||+..-...-.... .......|......
T Consensus 260 ~~~~~~t~skrs~G~~nL~lDs-------sGt-----~L~AsC-tD~sIy~ynm~s~s~sP~~~~-sg~~~~sf~vks~l 325 (720)
T KOG0321|consen 260 GSDKYPTHSKRSVGQVNLILDS-------SGT-----YLFASC-TDNSIYFYNMRSLSISPVAEF-SGKLNSSFYVKSEL 325 (720)
T ss_pred cccCccCcccceeeeEEEEecC-------CCC-----eEEEEe-cCCcEEEEeccccCcCchhhc-cCcccceeeeeeec
Confidence 123 23455666654 452 455555 599999999986432211111 01111111111112
Q ss_pred cccCCeeeecccCCCCceeecCCC-CceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEeCCCCC
Q 008939 452 AHWDNVCPVGTLQPAPSMRDVPKL-SPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 452 ~~~d~~~~~g~~~~~~~~~d~~~~-~~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~~~ 516 (548)
.--+..+..|+.+....+|.+... .+...+.+|.-.|+.++|.|. -++|+++|-.++||++....
T Consensus 326 Spd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 326 SPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred CCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 222456688899999999988765 467788899999999999995 29999999999999986554
No 131
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.1e-22 Score=175.23 Aligned_cols=254 Identities=15% Similarity=0.219 Sum_probs=199.9
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCC-CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK-DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~-~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
..|...|-.+..+--|++|++++.| +|+|+..+.... .++..+..|...+.-++|...- -|..|++++.||.|.||.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk-~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPK-FGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccc-cCcEeeEeecCceEEEEe
Confidence 3567777777778889999999888 999999986443 6788999999999999997632 288999999999999998
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc-EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG-AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
-++..+.... +...|...|++|+|.|.+-. +|++++.||.|.|.+.+.++.-
T Consensus 87 e~~g~w~k~~----------e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w----------------- 139 (299)
T KOG1332|consen 87 EENGRWTKAY----------EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW----------------- 139 (299)
T ss_pred cCCCchhhhh----------hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc-----------------
Confidence 7763221111 22358999999999997643 7888999999999999875221
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCC---C-----------CEEEEEECCCeEEEEeCCCCe--EEEeeeecCCceEEE
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTD---G-----------TYLATVGRDGYLRVFDYSKEQ--LICGGKSYYGALLCC 347 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~---g-----------~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~l 347 (548)
..-+....|.-.|++++|.|. | +.|++|+.|..|+||+...++ +.+.+.+|.+.|+.+
T Consensus 140 ------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDV 213 (299)
T KOG1332|consen 140 ------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDV 213 (299)
T ss_pred ------cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhh
Confidence 112334567788999999985 4 569999999999999998763 345589999999999
Q ss_pred EEccCC----CEEEEEeCCCeEEEEECCCc--e-eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeE
Q 008939 348 AWSMDG----KYILTGGEDDLVQVWSMEDR--K-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRL 420 (548)
Q Consensus 348 ~~spdg----~~l~sgs~dg~I~vwd~~~~--~-~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i 420 (548)
+|.|.- .+||++++||.|.||..+.. + ....++.....+..+.|++ .| +.|+.++.|+.|
T Consensus 214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~-------sG------n~LaVs~GdNkv 280 (299)
T KOG1332|consen 214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL-------SG------NILAVSGGDNKV 280 (299)
T ss_pred hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEec-------cc------cEEEEecCCcEE
Confidence 999965 37999999999999987632 1 1223344567899999999 88 799999999999
Q ss_pred EEEECCC
Q 008939 421 LLWDLEM 427 (548)
Q Consensus 421 ~lwd~~~ 427 (548)
.+|.-..
T Consensus 281 tlwke~~ 287 (299)
T KOG1332|consen 281 TLWKENV 287 (299)
T ss_pred EEEEeCC
Confidence 9997543
No 132
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.8e-21 Score=172.24 Aligned_cols=287 Identities=16% Similarity=0.172 Sum_probs=205.7
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCC--CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQD--KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
-++|..-+.++.|++.|+++++++.| +|+|||++... .......+.|.+.+..+.|.+.+- |+.+++++.|+.|.|
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf-GqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEF-GQVVATCSYDRTVSI 87 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccc-cceEEEEecCCceee
Confidence 35688889999999999999999988 99999976533 456667778999999999988765 889999999999999
Q ss_pred EEeee-cccccccceeeeeeeccCCcccCcceEEEEEecCCCc-EEEEEeCCCcEEEEEcCCCCCCC-CCccccccccee
Q 008939 203 VSLRQ-QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG-AFVVGHADGNLYVYEKSKDGAGD-SSFPVIKDQTQF 279 (548)
Q Consensus 203 wdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~-~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~~~~~~ 279 (548)
|+-.. .....++........ .-....|++|.|.|.... .|++++.||.|+||+.-...... ..++.-.
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl----~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei----- 158 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTL----VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI----- 158 (361)
T ss_pred eeecccccccccceeEEEEEe----ecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh-----
Confidence 98532 112222222221111 124789999999997543 78899999999999976422211 1111000
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCC---CCEEEEEECC-----CeEEEEeCCCC----eEEEeeeecCCceEEE
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTD---GTYLATVGRD-----GYLRVFDYSKE----QLICGGKSYYGALLCC 347 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~---g~~l~s~~~d-----g~v~vwd~~~~----~~~~~~~~~~~~v~~l 347 (548)
.+.+.....+..+..|+.|+|. ..+||+|+.+ +.+.||....+ ..+.++..|..+|+.+
T Consensus 159 ---------~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di 229 (361)
T KOG2445|consen 159 ---------QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDI 229 (361)
T ss_pred ---------hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceee
Confidence 0000111234577889999983 4678888765 47899987543 2456678999999999
Q ss_pred EEccCC----CEEEEEeCCCeEEEEECCCc--------------------eeEEeccCCCCCeEEEEEecCCCCCCCCCC
Q 008939 348 AWSMDG----KYILTGGEDDLVQVWSMEDR--------------------KVVAWGEGHNSWVSGVAFDSYWSQPNSDGT 403 (548)
Q Consensus 348 ~~spdg----~~l~sgs~dg~I~vwd~~~~--------------------~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~ 403 (548)
+|.|+- ..||+++.|| |+||++... +.+..+.+|++.|..+.|+- -|
T Consensus 230 ~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-------tG- 300 (361)
T KOG2445|consen 230 SWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-------TG- 300 (361)
T ss_pred eeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-------ee-
Confidence 999963 4799999999 999998731 24556778999999999987 77
Q ss_pred ccceeEEEEEEeCCCeEEEEECC---CCeEEeeeecCCCCCCcee
Q 008939 404 AETVMYRFGSVGQDTRLLLWDLE---MDEIVVPLRRGPLGGSPTF 445 (548)
Q Consensus 404 ~~~~~~~l~s~~~Dg~i~lwd~~---~~~~~~~~~~~~~~~~~~~ 445 (548)
..|.+.|.||+|++|... .-.|...+..+.......|
T Consensus 301 -----tiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~ 340 (361)
T KOG2445|consen 301 -----TILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDF 340 (361)
T ss_pred -----eEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCccc
Confidence 799999999999999754 2345555655444444433
No 133
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=9.6e-22 Score=185.89 Aligned_cols=296 Identities=13% Similarity=0.190 Sum_probs=208.9
Q ss_pred EEeCCCCCEEEEecC-C---eEEEEEccCCCCC-CeEEEecCCCCceEEEecCC----CCCCceEEEEEcCCcEEEEEee
Q 008939 136 TNFDGKGTYIIFNVG-D---AIFISDLNSQDKD-PIKSIHFSNSNPVCHAFDQD----AKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~-d---~v~vwd~~~~~~~-~i~~~~~~~~~~~~~~~~p~----~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
+..-|+..+|+++-. + .+.||=++..... -++.=..-+..+.|++|-.- +..|+++++|+.+-.|.|||+.
T Consensus 131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLD 210 (463)
T KOG0270|consen 131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLD 210 (463)
T ss_pred ceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccc
Confidence 444565556655432 2 4444444432211 12211224667899988643 3348899999999999999986
Q ss_pred ecccccccceeee-----------eeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc
Q 008939 207 QQLQDVGKKLVGA-----------HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD 275 (548)
Q Consensus 207 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 275 (548)
-. +...+.... ..-......|...|..+.|+..-.++|++|+.|.+|.+||+.+
T Consensus 211 I~--d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~------------- 275 (463)
T KOG0270|consen 211 IV--DAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT------------- 275 (463)
T ss_pred cc--cccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC-------------
Confidence 41 111111100 0011122358999999999999888999999999999999997
Q ss_pred cceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC
Q 008939 276 QTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK 354 (548)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~ 354 (548)
.+|...+..|.+.|.++.|+| ...+|++|+.|++|++.|.+........-...+.|-.++|.|...
T Consensus 276 -------------g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 276 -------------GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE 342 (463)
T ss_pred -------------CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc
Confidence 345566666789999999999 678999999999999999985433322233457899999999775
Q ss_pred -EEEEEeCCCeEEEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEe
Q 008939 355 -YILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV 432 (548)
Q Consensus 355 -~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~ 432 (548)
.++++..||.|+-+|++.. +++.+++.|.+.|++|++++ . ...++++++.|+.|++|++.......
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~-------~-----~p~~l~t~s~d~~Vklw~~~~~~~~~ 410 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNI-------Q-----TPGLLSTASTDKVVKLWKFDVDSPKS 410 (463)
T ss_pred eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecC-------C-----CCcceeeccccceEEEEeecCCCCcc
Confidence 5677789999999999985 89999999999999999976 1 11589999999999999987644321
Q ss_pred eeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEE
Q 008939 433 PLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKI 509 (548)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~i 509 (548)
...+ .+ ..+...+.++.|+ .|+.|+.-+.++|
T Consensus 411 v~~~-------------------------------------------~~--~~~rl~c~~~~~~~a~~la~GG~k~~~~v 445 (463)
T KOG0270|consen 411 VKEH-------------------------------------------SF--KLGRLHCFALDPDVAFTLAFGGEKAVLRV 445 (463)
T ss_pred cccc-------------------------------------------cc--cccceeecccCCCcceEEEecCccceEEE
Confidence 1111 00 1223667777776 3888888889999
Q ss_pred EeCCCCC
Q 008939 510 WMRPGVA 516 (548)
Q Consensus 510 W~~~~~~ 516 (548)
||+-...
T Consensus 446 wd~~~~~ 452 (463)
T KOG0270|consen 446 WDIFTNS 452 (463)
T ss_pred eecccCh
Confidence 9976543
No 134
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=1.6e-22 Score=194.06 Aligned_cols=244 Identities=19% Similarity=0.244 Sum_probs=175.6
Q ss_pred EecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEE
Q 008939 169 IHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV 248 (548)
Q Consensus 169 ~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s 248 (548)
+..+...|..++++|. |..|++|+.|..|++||+..- +...+....+ .......|+++.|++.+. .|++
T Consensus 163 l~hgtk~Vsal~~Dp~---GaR~~sGs~Dy~v~~wDf~gM--das~~~fr~l-----~P~E~h~i~sl~ys~Tg~-~iLv 231 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPS---GARFVSGSLDYTVKFWDFQGM--DASMRSFRQL-----QPCETHQINSLQYSVTGD-QILV 231 (641)
T ss_pred ccCCceEEEEeeecCC---CceeeeccccceEEEEecccc--cccchhhhcc-----CcccccccceeeecCCCC-eEEE
Confidence 3445668899999999 889999999999999998752 1111111000 012456899999999999 7777
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEe
Q 008939 249 GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFD 327 (548)
Q Consensus 249 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd 327 (548)
.+..-..+|+|-+- .....+ ..+.++.. -+..-++|...++|.+|+|. ...+++++.||++||||
T Consensus 232 vsg~aqakl~DRdG--~~~~e~---~KGDQYI~---------Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWd 297 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDG--FEIVEF---SKGDQYIR---------DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWD 297 (641)
T ss_pred EecCcceeEEccCC--ceeeee---eccchhhh---------hhhccCCceeeeeccccccCcccceEEecCCCcEEEEe
Confidence 77778999999652 221111 11222221 13445788899999999994 56899999999999999
Q ss_pred CCCCe-EEEeee-----ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce--e-EEeccCCCC--CeEEEEEecCCC
Q 008939 328 YSKEQ-LICGGK-----SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK--V-VAWGEGHNS--WVSGVAFDSYWS 396 (548)
Q Consensus 328 ~~~~~-~~~~~~-----~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~--~-~~~~~~h~~--~V~~v~~~p~~~ 396 (548)
+..-+ .+..++ +..-.++.|+|++||++||+|..||.|.+|+..... + .+.-.+|.. .|++|.|++
T Consensus 298 v~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~--- 374 (641)
T KOG0772|consen 298 VNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY--- 374 (641)
T ss_pred cCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc---
Confidence 97543 222222 223468999999999999999999999999986532 2 233346876 999999999
Q ss_pred CCCCCCCccceeEEEEEEeCCCeEEEEECCCCe-EEeeee---cCCCCCCceecCCCC
Q 008939 397 QPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE-IVVPLR---RGPLGGSPTFSTGSQ 450 (548)
Q Consensus 397 ~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~-~~~~~~---~~~~~~~~~~~~~~~ 450 (548)
|| ++|++-+.|..+++|||+.-+ ++.... ..-+.+.++|+|+..
T Consensus 375 ----dg------~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k 422 (641)
T KOG0772|consen 375 ----DG------NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK 422 (641)
T ss_pred ----cc------chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCce
Confidence 99 899999999999999998743 343332 224567888988864
No 135
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=181.88 Aligned_cols=252 Identities=15% Similarity=0.200 Sum_probs=188.9
Q ss_pred ccccccCCCCCCceeEEeCCCCC-EEEEec-CC-eEEEEEccCC--------------CCCCeEEEecCCCCceEEEecC
Q 008939 121 IGSLGASSSSTSMTNTNFDGKGT-YIIFNV-GD-AIFISDLNSQ--------------DKDPIKSIHFSNSNPVCHAFDQ 183 (548)
Q Consensus 121 ~~~~~~~~h~~~v~~~~~~~~g~-~l~~~~-~d-~v~vwd~~~~--------------~~~~i~~~~~~~~~~~~~~~~p 183 (548)
...+..-+|.+.+..+.-++-|+ .++.+- .. .|+||++... ..+|+.++..|...-..++|+|
T Consensus 142 ~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 142 QIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred cccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccc
Confidence 33555666766666666665532 233322 22 8888887542 2478999999999999999999
Q ss_pred CCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 008939 184 DAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKD 263 (548)
Q Consensus 184 ~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~ 263 (548)
-. ...|++|..-+.|++|...+..+...+..+ ..|...|-+|+|+|...++|++|+.||+|+|||++..
T Consensus 222 ~~--~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf---------~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~ 290 (440)
T KOG0302|consen 222 IK--TGRLLSGDCVKGIHLWEPSTGSWKVDQRPF---------TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSG 290 (440)
T ss_pred cc--ccccccCccccceEeeeeccCceeecCccc---------cccccchhhhccCCccCceEEeeecCceEEEEEecCC
Confidence 53 346889999999999998774444333322 2489999999999999889999999999999999973
Q ss_pred CCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC---CeEEEeeeec
Q 008939 264 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK---EQLICGGKSY 340 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~---~~~~~~~~~~ 340 (548)
. ..+....+.|.+.|+.+.|+....+||+|+.||+++|||++. ++++..++-|
T Consensus 291 ~------------------------~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H 346 (440)
T KOG0302|consen 291 P------------------------KKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH 346 (440)
T ss_pred C------------------------ccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec
Confidence 1 233444588999999999999877999999999999999974 5678899999
Q ss_pred CCceEEEEEccCC-CEEEEEeCCCeEEEEECCCce----------------eEEeccCC--CCCeEEEEEecCCCCCCCC
Q 008939 341 YGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRK----------------VVAWGEGH--NSWVSGVAFDSYWSQPNSD 401 (548)
Q Consensus 341 ~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~----------------~~~~~~~h--~~~V~~v~~~p~~~~~~~d 401 (548)
..+|++|.|+|.. ..|++++.|..|.|||+..-. +-+.+.-| ...|..|.|++. ..
T Consensus 347 k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Q-----iP 421 (440)
T KOG0302|consen 347 KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQ-----IP 421 (440)
T ss_pred cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccC-----CC
Confidence 9999999999965 468888999999999985211 00111123 456788999871 12
Q ss_pred CCccceeEEEEEEeCCCe
Q 008939 402 GTAETVMYRFGSVGQDTR 419 (548)
Q Consensus 402 g~~~~~~~~l~s~~~Dg~ 419 (548)
| +|++.+.||-
T Consensus 422 G-------~lvsTa~dGf 432 (440)
T KOG0302|consen 422 G-------LLVSTAIDGF 432 (440)
T ss_pred C-------eEEEecccce
Confidence 3 7888888884
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.8e-20 Score=185.91 Aligned_cols=288 Identities=15% Similarity=0.203 Sum_probs=216.4
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
++.+.+.|..++|+||+.. .+.|+++-.+|.|.+|+++.. --....++- .....|..++|++.+ .
T Consensus 18 crf~d~~Ps~I~slA~s~k---S~~lAvsRt~g~IEiwN~~~~-----w~~~~vi~g-----~~drsIE~L~W~e~~--R 82 (691)
T KOG2048|consen 18 CRFVDYKPSEIVSLAYSHK---SNQLAVSRTDGNIEIWNLSNN-----WFLEPVIHG-----PEDRSIESLAWAEGG--R 82 (691)
T ss_pred EEEEeeeccceEEEEEecc---CCceeeeccCCcEEEEccCCC-----ceeeEEEec-----CCCCceeeEEEccCC--e
Confidence 3455678999999999998 667999999999999999872 111111111 146789999999666 5
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 325 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~v 325 (548)
|.+.+.+|.|.-||+.+ .++....+.-.+.|.+++.+|.+..++.++.||.+..
T Consensus 83 LFS~g~sg~i~EwDl~~--------------------------lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~ 136 (691)
T KOG2048|consen 83 LFSSGLSGSITEWDLHT--------------------------LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYD 136 (691)
T ss_pred EEeecCCceEEEEeccc--------------------------CceeEEecCCCcceeEEEeCCccceEEeecCCceEEE
Confidence 89999999999999986 2445555555689999999999999999999998888
Q ss_pred EeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec-------c-CCCCCeEEEEEecCC
Q 008939 326 FDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG-------E-GHNSWVSGVAFDSYW 395 (548)
Q Consensus 326 wd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~-------~-~h~~~V~~v~~~p~~ 395 (548)
++...++.... +....+.|.++.|+|++..|+.|+.||.|++||...+..++.. . +..--|++|.|-.
T Consensus 137 ~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-- 214 (691)
T KOG2048|consen 137 FSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-- 214 (691)
T ss_pred EecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--
Confidence 88887776543 4445689999999999999999999999999999998766622 1 1344678999887
Q ss_pred CCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCCCceecCCCCccccCCeeeecccCCCCcee-ecC
Q 008939 396 SQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMR-DVP 473 (548)
Q Consensus 396 ~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~-d~~ 473 (548)
|+ .|++|..-|.|.+||-..+.+++....+ ..+.+++.+.+. ..+..+..|+.+-.+ ...
T Consensus 215 -----d~-------tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~------d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 215 -----DS-------TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE------DRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred -----cC-------cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC------CeEEEccCCCceEEEEecC
Confidence 77 8999999999999999999988877643 344555554443 223333333333332 222
Q ss_pred CCC---ceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCC
Q 008939 474 KLS---PLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 474 ~~~---~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~ 514 (548)
... .......|...|.+++..++.|++|+.|..+.+-....
T Consensus 277 ~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 277 NKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSRE 320 (691)
T ss_pred CccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccc
Confidence 211 22333468889999999999999999999998877544
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.9e-23 Score=206.55 Aligned_cols=236 Identities=20% Similarity=0.255 Sum_probs=204.5
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+..|...+.++..-..++.++.++.+ .+-+|.+.... ++..+..|...|-|+.|++. ..+|+.|..+|.|++|
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~--~i~S~~~hespIeSl~f~~~---E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN--AITSLTGHESPIESLTFDTS---ERLLAAGSASGTIKVW 97 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc--hhheeeccCCcceeeecCcc---hhhhcccccCCceeee
Confidence 344566666677766667788888888 77799998854 88889999999999999998 7789999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
|++.. +.+. ...+|...+..+.|+|-+. +++.|+.|+.+.+||.++
T Consensus 98 DleeA-----k~vr-------tLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk--------------------- 143 (825)
T KOG0267|consen 98 DLEEA-----KIVR-------TLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRK--------------------- 143 (825)
T ss_pred ehhhh-----hhhh-------hhhccccCcceeeeccceE-Eeccccccccceehhhhc---------------------
Confidence 99861 2111 1224889999999999999 889999999999999986
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
.++.+.+++|...|.++.|+|+|++++.++.|..++|||+..|+++..|+.|.+.+..+.|+|..-+++.|+.|+
T Consensus 144 -----~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~ 218 (825)
T KOG0267|consen 144 -----KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR 218 (825)
T ss_pred -----cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc
Confidence 466888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
+|++||+++.+.+.........|.+++|+| +| ..+.+|.++
T Consensus 219 tv~f~dletfe~I~s~~~~~~~v~~~~fn~-------~~------~~~~~G~q~ 259 (825)
T KOG0267|consen 219 TVRFWDLETFEVISSGKPETDGVRSLAFNP-------DG------KIVLSGEQI 259 (825)
T ss_pred eeeeeccceeEEeeccCCccCCceeeeecC-------Cc------eeeecCchh
Confidence 999999999999988888889999999999 88 556655544
No 138
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=6.3e-20 Score=180.14 Aligned_cols=267 Identities=12% Similarity=0.073 Sum_probs=186.2
Q ss_pred ceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 008939 189 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDS 268 (548)
Q Consensus 189 ~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 268 (548)
..+++++.|+.|++||+.+ ++ ...... ....+.+++|+|++..+++++..++.|++||.....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t-----~~-~~~~~~-------~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---- 64 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTAT-----LE-VTRTFP-------VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE---- 64 (300)
T ss_pred cEEEEecCCCEEEEEECCC-----Cc-eEEEEE-------CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc----
Confidence 3678889999999999875 22 222111 123467899999998444677889999999987521
Q ss_pred CcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCCCeEEEeeeecCCceEEE
Q 008939 269 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSKEQLICGGKSYYGALLCC 347 (548)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 347 (548)
.+..+..+ ..+..++|+|+++.++++ ..|+.|++||+++.+.+..+.. ...+.++
T Consensus 65 ----------------------~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~ 120 (300)
T TIGR03866 65 ----------------------VIGTLPSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGM 120 (300)
T ss_pred ----------------------EEEeccCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceE
Confidence 11112222 235678999999877655 5689999999998887776653 3346889
Q ss_pred EEccCCCEEEEEeCCC-eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE-EEEeCCCeEEEEEC
Q 008939 348 AWSMDGKYILTGGEDD-LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF-GSVGQDTRLLLWDL 425 (548)
Q Consensus 348 ~~spdg~~l~sgs~dg-~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l-~s~~~Dg~i~lwd~ 425 (548)
+|+|++++++++..++ .+.+||.++++.+..+. ....+..++|+| +| .+| +++..++.|++||+
T Consensus 121 ~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~-------dg------~~l~~~~~~~~~v~i~d~ 186 (300)
T TIGR03866 121 AVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTA-------DG------KELWVSSEIGGTVSVIDV 186 (300)
T ss_pred EECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECC-------CC------CEEEEEcCCCCEEEEEEc
Confidence 9999999999988765 57788999887765543 233457899999 88 455 45556999999999
Q ss_pred CCCeEEeeeecCCC--------CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe
Q 008939 426 EMDEIVVPLRRGPL--------GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES 497 (548)
Q Consensus 426 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~ 497 (548)
++++++..+..... ...+.+++++.. .+.....+..+.+||+.+.+.+..+. +...+.+++|+|++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~-----~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g 260 (300)
T TIGR03866 187 ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT-----AFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDE 260 (300)
T ss_pred CcceeeeeeeecccccccccCCccceEECCCCCE-----EEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCC
Confidence 99988776643211 123445555421 11222234568889998777665543 44579999999974
Q ss_pred --EEEE-ECCCeEEEEeCCCCC
Q 008939 498 --VLTV-CREGHIKIWMRPGVA 516 (548)
Q Consensus 498 --l~t~-s~Dg~I~iW~~~~~~ 516 (548)
|+++ ..++.|++||+.+.+
T Consensus 261 ~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 261 KYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCc
Confidence 6665 569999999998866
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=8.3e-21 Score=171.97 Aligned_cols=243 Identities=13% Similarity=0.159 Sum_probs=182.3
Q ss_pred CCCceeEEeCCCCCEEEEec-CCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 130 STSMTNTNFDGKGTYIIFNV-GDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~-~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
...|..+.|+|.+..|++++ +..+++||+.... ....+. +...+++.+|.++ ..+++|+.||.|+.+|+...
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--l~~~~~-~~~plL~c~F~d~----~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--LKLKFK-HGAPLLDCAFADE----STIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--hhhhee-cCCceeeeeccCC----ceEEEeccCceEEEEEecCC
Confidence 45677899998877666655 5599999999743 333333 6778999999874 35899999999999999872
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
. ...+ . .|...|.||.+++... .+++|+.|++|++||.+... ...
T Consensus 86 ~---~~~i---g-------th~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~-~~~-------------------- 130 (323)
T KOG1036|consen 86 N---EDQI---G-------THDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKV-VVG-------------------- 130 (323)
T ss_pred c---ceee---c-------cCCCceEEEEeeccCC-eEEEcccCccEEEEeccccc-ccc--------------------
Confidence 1 1111 1 2899999999998777 89999999999999998511 000
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee--ecCCceEEEEEccCCCEEEEEeCCCeEE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMDGKYILTGGEDDLVQ 366 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~spdg~~l~sgs~dg~I~ 366 (548)
.+.. ...|.++.. .++.|++|+.|..+.+||+++.....+.+ ...-.++|+++-|++.-.++++-||.|.
T Consensus 131 -----~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVa 202 (323)
T KOG1036|consen 131 -----TFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVA 202 (323)
T ss_pred -----cccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEE
Confidence 0110 146777765 46689999999999999999765443211 2334689999999888899999999999
Q ss_pred EEECCCc----eeEEeccCCC---------CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 367 VWSMEDR----KVVAWGEGHN---------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 367 vwd~~~~----~~~~~~~~h~---------~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
+=.++.. +....|+.|. -+|.+|+|+| -- ..|+||+.||.|.+||+...+.+..
T Consensus 203 vE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-------~~------~tfaTgGsDG~V~~Wd~~~rKrl~q 269 (323)
T KOG1036|consen 203 VEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-------IH------GTFATGGSDGIVNIWDLFNRKRLKQ 269 (323)
T ss_pred EEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-------cc------ceEEecCCCceEEEccCcchhhhhh
Confidence 9777665 3444566664 3899999999 22 4799999999999999998776654
Q ss_pred ee
Q 008939 434 LR 435 (548)
Q Consensus 434 ~~ 435 (548)
+.
T Consensus 270 ~~ 271 (323)
T KOG1036|consen 270 LA 271 (323)
T ss_pred cc
Confidence 43
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.7e-21 Score=184.84 Aligned_cols=303 Identities=12% Similarity=0.115 Sum_probs=216.8
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
.+...+..+...+++++|+|... -.++++|...|+|-+||++.+..+..+... +..|..+|.+|.|+|.+.
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~-~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~--------f~~hs~~Vs~l~F~P~n~ 247 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTEN-RKLVAVGDKGGQVGLWNFGTQEKDKDGVYL--------FTPHSGPVSGLKFSPANT 247 (498)
T ss_pred eecceeEecccceEEEEecccCc-ceEEEEccCCCcEEEEecCCCCCccCceEE--------eccCCccccceEecCCCh
Confidence 35566677888999999999853 468999999999999999753223222221 124899999999999988
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
..+++.+.||+|++-|++..- .. .+..++.....+..+.|+.+...++.+..=|.+
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i-~e-----------------------~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f 303 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNI-SE-----------------------EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNF 303 (498)
T ss_pred hheeeeccCceeeeeeecchh-hH-----------------------HHhhcCccceeeeeccccCCCccEEEeecccce
Confidence 899999999999999998621 11 111111122457788899888888888888899
Q ss_pred EEEeCCCCeE-EEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCCcee----EEeccCCCCCeEEEEEecCCCC
Q 008939 324 RVFDYSKEQL-ICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDRKV----VAWGEGHNSWVSGVAFDSYWSQ 397 (548)
Q Consensus 324 ~vwd~~~~~~-~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~~~~----~~~~~~h~~~V~~v~~~p~~~~ 397 (548)
.+||+++... ...+.-|...|..++++|... +|++++.|++++|||++.-.. +.....|...|.+..|+|
T Consensus 304 ~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSP---- 379 (498)
T KOG4328|consen 304 NVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSP---- 379 (498)
T ss_pred EEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcC----
Confidence 9999997654 555667888999999999654 789999999999999987432 223345999999999999
Q ss_pred CCCCCCccceeEEEEEEeCCCeEEEEEC----CCCeEEeeeecCCCCCCceecCCCCccccC-CeeeecccCCCCceeec
Q 008939 398 PNSDGTAETVMYRFGSVGQDTRLLLWDL----EMDEIVVPLRRGPLGGSPTFSTGSQSAHWD-NVCPVGTLQPAPSMRDV 472 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~~Dg~i~lwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~g~~~~~~~~~d~ 472 (548)
+| -.|++.++|..|+|||. ...+...++.+. ....-..++-.....|+ ..+.+|.....+-++|-
T Consensus 380 ---s~------gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn-~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 380 ---SG------GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN-NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred ---CC------CceEeeccCCceEEeecccccccCCccceeecc-CcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 66 35999999999999998 444555555542 22222222222223333 45588888888888888
Q ss_pred CCCCceEEeecCCC-CeeEE-EEeCC--eEEEE-ECCCeEEEEeCC
Q 008939 473 PKLSPLVAHRVHTE-PLSGL-IFTQE--SVLTV-CREGHIKIWMRP 513 (548)
Q Consensus 473 ~~~~~~~~~~~h~~-~V~~l-~fspd--~l~t~-s~Dg~I~iW~~~ 513 (548)
...+.+..+..... .|.++ .|+|- .+++| +.-|.|.||.-.
T Consensus 450 ~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 450 NGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred CCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 77777776544333 55554 68883 35555 467889988644
No 141
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=4.2e-20 Score=187.03 Aligned_cols=350 Identities=16% Similarity=0.199 Sum_probs=270.8
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.++...|+++.-+|-=+.++.+..+ +|.|++++..+ .+.+++-..+.|+.+.|.-|+ ...+++|...|.+.+|
T Consensus 197 ~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk--il~sFk~d~g~VtslSFrtDG--~p~las~~~~G~m~~w 272 (910)
T KOG1539|consen 197 TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK--ILMSFKQDWGRVTSLSFRTDG--NPLLASGRSNGDMAFW 272 (910)
T ss_pred EecccccceeEeccCCcceEEEEeccCceEEEEEcccCc--EEEEEEccccceeEEEeccCC--CeeEEeccCCceEEEE
Confidence 556677889999999999999999888 99999999844 788888555899999999883 3467777888999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcc------------
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFP------------ 271 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~------------ 271 (548)
|++. +++..... ..|.+.|....|.|..+ ++++++.|..+++|=.+++......+.
T Consensus 273 DLe~------kkl~~v~~-----nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~i 340 (910)
T KOG1539|consen 273 DLEK------KKLINVTR-----NAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCI 340 (910)
T ss_pred EcCC------Ceeeeeee-----ccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhe
Confidence 9986 33322211 13788899999999988 999999999988886653211000000
Q ss_pred -cccccceeeee----------------------c--C------------CCCC--------------------------
Q 008939 272 -VIKDQTQFSVA----------------------H--P------------RYSK-------------------------- 288 (548)
Q Consensus 272 -~~~~~~~~~~~----------------------~--~------------~~~~-------------------------- 288 (548)
.......+... + . ...+
T Consensus 341 rfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~ 420 (910)
T KOG1539|consen 341 RFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKG 420 (910)
T ss_pred eeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecC
Confidence 00000000000 0 0 0000
Q ss_pred CCCeeEeee-----------c------CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee---eecCCceEEEE
Q 008939 289 SNPIARWHI-----------C------QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG---KSYYGALLCCA 348 (548)
Q Consensus 289 ~~~~~~~~~-----------h------~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~---~~~~~~v~~l~ 348 (548)
......|+. + ...+++++.++.|++.+.|+..|.|-+|++.+|-....+ ..|.++|+.++
T Consensus 421 ~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla 500 (910)
T KOG1539|consen 421 KRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLA 500 (910)
T ss_pred cceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEE
Confidence 111111211 1 257889999999999999999999999999999888877 58999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 349 ~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
...-++.+++++.+|.+.+||..+...+..+. -...+.++.++. .. -+++.+..|-.|+++|..+.
T Consensus 501 ~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-------~s------~l~a~~~ddf~I~vvD~~t~ 566 (910)
T KOG1539|consen 501 VDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-------VS------DLLAIALDDFSIRVVDVVTR 566 (910)
T ss_pred ecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-------hh------hhhhhhcCceeEEEEEchhh
Confidence 99989999999999999999999988887777 556778888876 44 47899999999999999999
Q ss_pred eEEeeee-cCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECC-
Q 008939 429 EIVVPLR-RGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCRE- 504 (548)
Q Consensus 429 ~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~D- 504 (548)
+.++.+. +...++.++|++++ ..+.+.+.|..++.||+++...+..+.. ..+.+.|.|+|+ .|+|+..|
T Consensus 567 kvvR~f~gh~nritd~~FS~Dg------rWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 567 KVVREFWGHGNRITDMTFSPDG------RWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred hhhHHhhccccceeeeEeCCCC------cEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecC
Confidence 9999988 44789999999998 6667888899999999999999887753 577899999996 59999998
Q ss_pred CeEEEEe
Q 008939 505 GHIKIWM 511 (548)
Q Consensus 505 g~I~iW~ 511 (548)
.-|++|.
T Consensus 640 ~gIylWs 646 (910)
T KOG1539|consen 640 NGIYLWS 646 (910)
T ss_pred ceEEEEE
Confidence 6699997
No 142
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1e-20 Score=193.44 Aligned_cols=242 Identities=16% Similarity=0.216 Sum_probs=195.0
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
.|....+.++|+++|.+|++++.| .|++|+......+| ..+..+...+.+++.. ..+|++|+.++.|.+|.+.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-~ti~~~g~~v~~ia~~-----s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-ETIDISGELVSSIACY-----SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-chhhccCceeEEEeec-----ccceEEeeccceEEEeeCC
Confidence 466667899999999999998887 99999977642222 2222255666666665 4489999999999999887
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
... ....+.. ..-++++++|+.+|. +++.|+.|-.|++-++...
T Consensus 85 s~~--~~~iL~R----------ftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~----------------------- 128 (933)
T KOG1274|consen 85 SGE--EDTILAR----------FTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDS----------------------- 128 (933)
T ss_pred CCC--ccceeee----------eeccceEEEEecCCc-EEEeecCceeEEEEecccc-----------------------
Confidence 621 1111111 356889999999999 9999999999999998762
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeec--------CCceEEEEEccCCCEEEE
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY--------YGALLCCAWSMDGKYILT 358 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--------~~~v~~l~~spdg~~l~s 358 (548)
.....+++|+++|.++.|+|++++||+.+.||.|+|||+.++.+...+.+- ...+..++|+|++..|+.
T Consensus 129 ---s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 129 ---SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred ---chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe
Confidence 346778899999999999999999999999999999999988776554321 345677899999888888
Q ss_pred EeCCCeEEEEECCCceeEEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 359 GGEDDLVQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 359 gs~dg~I~vwd~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
...|+.|++|+.........++. +...+..+.|+| +| .+||+++.||.|.|||.++
T Consensus 206 ~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-------nG------~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 206 PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-------NG------KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eccCCeEEEEccCCceeheeecccccccceEEEEEcC-------CC------cEEeeeccCCcEEEEeccc
Confidence 88999999999999988777763 455599999999 99 8999999999999999987
No 143
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=3e-20 Score=184.50 Aligned_cols=403 Identities=12% Similarity=0.105 Sum_probs=258.4
Q ss_pred cccccCCCCCCceeEEeCCCCC---EEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC
Q 008939 122 GSLGASSSSTSMTNTNFDGKGT---YIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS 197 (548)
Q Consensus 122 ~~~~~~~h~~~v~~~~~~~~g~---~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d 197 (548)
......+|..+|+|+.+-|+.+ +++++..| .|.+|.++......+..+..+...+.|+.-.+. ...+...|
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~-----~~~~~~ad 120 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSS-----VMTCKAAD 120 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeee-----EEEeeccC
Confidence 3567789999999999999888 77787777 999999996554556666654444444433322 22233689
Q ss_pred CcEEEEEeeecc----------------------cccccceeee------e----------eeccCCcccCcceEEEEEe
Q 008939 198 GDVYSVSLRQQL----------------------QDVGKKLVGA------H----------HYNKDGSVNNSRCTSVTWV 239 (548)
Q Consensus 198 g~I~iwdl~~~~----------------------~~~~~~~~~~------~----------~~~~~~~~~~~~v~~l~~~ 239 (548)
+.+++||..+.. +..+..+... . ....+..+|.+.|.+|+|.
T Consensus 121 ~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~ 200 (764)
T KOG1063|consen 121 GTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFA 200 (764)
T ss_pred ceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhh
Confidence 999999984311 0000000000 0 0001123589999999998
Q ss_pred cCCC--cEEEEEeCCCcEEEEEcCCCCCCC-----CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC
Q 008939 240 PGGD--GAFVVGHADGNLYVYEKSKDGAGD-----SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT 312 (548)
Q Consensus 240 p~~~--~~l~s~~~dg~v~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~ 312 (548)
..+. .+|++++.|..|+||.+...+... .......+...|.....-.-+...-..+.+|+..|+++.|+|.+.
T Consensus 201 ~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~ 280 (764)
T KOG1063|consen 201 RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL 280 (764)
T ss_pred ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh
Confidence 7554 478889999999999986544222 001111111111111000000011134458999999999999999
Q ss_pred EEEEEECCCeEEEEeCCCC--eE-----EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc---eeEEeccCC
Q 008939 313 YLATVGRDGYLRVFDYSKE--QL-----ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR---KVVAWGEGH 382 (548)
Q Consensus 313 ~l~s~~~dg~v~vwd~~~~--~~-----~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~---~~~~~~~~h 382 (548)
.|++++.|.++.+|...+. -- +..+-+..+....+.|+|++..+++-+.-|-.++|...+. .....+.||
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH 360 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH 360 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc
Confidence 9999999999999987654 11 2223334567899999999999999999999999984332 344456799
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe-EEeeeecC----CCCCCcee------------
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE-IVVPLRRG----PLGGSPTF------------ 445 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~-~~~~~~~~----~~~~~~~~------------ 445 (548)
.+.|..|+|+| .| .+|++++.|.+-|||---..+ .-.++..+ ....++.|
T Consensus 361 ~~~V~dv~W~p-------sG------eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAd 427 (764)
T KOG1063|consen 361 VDGVKDVDWDP-------SG------EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGAD 427 (764)
T ss_pred cccceeeeecC-------CC------CEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeeccc
Confidence 99999999999 88 699999999998887533000 00011000 00000000
Q ss_pred ------------------------------cCCCC------------c--------------------------------
Q 008939 446 ------------------------------STGSQ------------S-------------------------------- 451 (548)
Q Consensus 446 ------------------------------~~~~~------------~-------------------------------- 451 (548)
.+++. .
T Consensus 428 EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed 507 (764)
T KOG1063|consen 428 EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED 507 (764)
T ss_pred ceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence 00000 0
Q ss_pred -----ccc--------------------CCe-eeecc-----cCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eE
Q 008939 452 -----AHW--------------------DNV-CPVGT-----LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SV 498 (548)
Q Consensus 452 -----~~~--------------------d~~-~~~g~-----~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l 498 (548)
..| +.. ++... ....+++|+...+..+..+.+|.-.|+.|+|+|| +|
T Consensus 508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 508 QLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL 587 (764)
T ss_pred HHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence 000 000 00000 0346888999999999999999999999999998 49
Q ss_pred EEEECCCeEEEEeCCCCCcc------ccCCCCcEE--EecCCCCceEeeecc
Q 008939 499 LTVCREGHIKIWMRPGVAES------QSSSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 499 ~t~s~Dg~I~iW~~~~~~~~------~~~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
+++|+|.++.+|+....... ...|..-|+ +++||+++++++...
T Consensus 588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD 639 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRD 639 (764)
T ss_pred EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCC
Confidence 99999999999997543311 235666666 789999999998655
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=4.7e-21 Score=183.13 Aligned_cols=293 Identities=13% Similarity=0.177 Sum_probs=221.8
Q ss_pred EEEEecCCeEEEEEccCCCCCC-eEEEecCCCCceEEEecCCCCCCceEEEEEcCCc--EEEEEeeecccccccceeeee
Q 008939 144 YIIFNVGDAIFISDLNSQDKDP-IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD--VYSVSLRQQLQDVGKKLVGAH 220 (548)
Q Consensus 144 ~l~~~~~d~v~vwd~~~~~~~~-i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~--I~iwdl~~~~~~~~~~~~~~~ 220 (548)
+.+.+++|.+++||+.....++ +.... .+..+..+.|+.. +.|++++..|. |.+|.-..+.. .-+++.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-~~pg~~s~~w~~~----n~lvvas~~gdk~~~~~~K~g~~~--~Vp~~~-- 75 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-AEPGDFSFNWQRR----NFLVVASMAGDKVMRIKEKDGKTP--EVPRVR-- 75 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-CCCcceeeecccc----ceEEEeecCCceeEEEecccCCCC--ccceee--
Confidence 5677788899999998643222 11111 2224677777764 23677766554 77776544210 011111
Q ss_pred eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 221 HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 221 ~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
+. ..+.-.|++...... ++++|+..+.|+|||++. .-..+.++.|+.
T Consensus 76 ---k~---~gd~~~Cv~~~s~S~-y~~sgG~~~~Vkiwdl~~--------------------------kl~hr~lkdh~s 122 (673)
T KOG4378|consen 76 ---KL---TGDNAFCVACASQSL-YEISGGQSGCVKIWDLRA--------------------------KLIHRFLKDHQS 122 (673)
T ss_pred ---cc---ccchHHHHhhhhcce-eeeccCcCceeeehhhHH--------------------------HHHhhhccCCcc
Confidence 11 122334444444445 899999999999999984 123455678899
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeec-CCceEEEEEccCCCE-EEEEeCCCeEEEEECCCceeEEe
Q 008939 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY-YGALLCCAWSMDGKY-ILTGGEDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~spdg~~-l~sgs~dg~I~vwd~~~~~~~~~ 378 (548)
.|+++.++....|||+++..|.|.|..+.++.....+... ...|+-+.|+|..++ |.+++.+|.|.+||+....++..
T Consensus 123 tvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~ 202 (673)
T KOG4378|consen 123 TVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH 202 (673)
T ss_pred eeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc
Confidence 9999999998899999999999999999998877666644 345668999998875 56789999999999988776654
Q ss_pred -ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCe
Q 008939 379 -GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNV 457 (548)
Q Consensus 379 -~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 457 (548)
.+.|..+...|+|+| ... .+|++.|.|..|.+||++.......+....+-..++|.++| .+
T Consensus 203 ~~~~HsAP~~gicfsp-------sne-----~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G------~~ 264 (673)
T KOG4378|consen 203 ASEAHSAPCRGICFSP-------SNE-----ALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECG------TY 264 (673)
T ss_pred hhhhccCCcCcceecC-------Ccc-----ceEEEecccceEEEeecccccccceeeecCCcceeeecCCc------eE
Confidence 467999999999999 331 68999999999999999999988888888999999999887 66
Q ss_pred eeecccCCCCceeecCCC-CceEEeecCCCCeeEEEEeCC
Q 008939 458 CPVGTLQPAPSMRDVPKL-SPLVAHRVHTEPLSGLIFTQE 496 (548)
Q Consensus 458 ~~~g~~~~~~~~~d~~~~-~~~~~~~~h~~~V~~l~fspd 496 (548)
+..|+..+.+..||++.. .|+..+..|...|++|+|-|.
T Consensus 265 L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 265 LCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred EEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 789999999999999854 689999999999999999875
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.7e-20 Score=189.49 Aligned_cols=265 Identities=14% Similarity=0.234 Sum_probs=202.7
Q ss_pred cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 171 FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 171 ~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
+|...-+.++|.|+ |..|++++.||.|++|+......++ +.+ .++...|.+++... . .|++|+
T Consensus 11 aht~G~t~i~~d~~---gefi~tcgsdg~ir~~~~~sd~e~P--~ti---------~~~g~~v~~ia~~s--~-~f~~~s 73 (933)
T KOG1274|consen 11 AHTGGLTLICYDPD---GEFICTCGSDGDIRKWKTNSDEEEP--ETI---------DISGELVSSIACYS--N-HFLTGS 73 (933)
T ss_pred hccCceEEEEEcCC---CCEEEEecCCCceEEeecCCcccCC--chh---------hccCceeEEEeecc--c-ceEEee
Confidence 46677899999999 7799999999999999876521111 111 01456677776643 3 799999
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.+++|.+|.+.... ... .+.++ +-++++++|+-+|+++|.|+.|-.|++.++.+
T Consensus 74 ~~~tv~~y~fps~~-~~~----------------------iL~Rf---tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D 127 (933)
T KOG1274|consen 74 EQNTVLRYKFPSGE-EDT----------------------ILARF---TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD 127 (933)
T ss_pred ccceEEEeeCCCCC-ccc----------------------eeeee---eccceEEEEecCCcEEEeecCceeEEEEeccc
Confidence 99999999987632 111 11122 26799999999999999999999999999999
Q ss_pred CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC--------CCCeEEEEEecCCCCCCCCC
Q 008939 331 EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH--------NSWVSGVAFDSYWSQPNSDG 402 (548)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h--------~~~V~~v~~~p~~~~~~~dg 402 (548)
......+++|.++|.++.|+|.+++||+.+-||.|++||+.++.+..++.+- ...+..++|+| +|
T Consensus 128 ~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-------k~ 200 (933)
T KOG1274|consen 128 SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-------KG 200 (933)
T ss_pred cchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-------CC
Confidence 9889999999999999999999999999999999999999998877666421 35667899999 86
Q ss_pred CccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee
Q 008939 403 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR 482 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~ 482 (548)
..++..+.|+.|++|+....+....+.. .
T Consensus 201 ------g~la~~~~d~~Vkvy~r~~we~~f~Lr~---------------------------------------------~ 229 (933)
T KOG1274|consen 201 ------GTLAVPPVDNTVKVYSRKGWELQFKLRD---------------------------------------------K 229 (933)
T ss_pred ------CeEEeeccCCeEEEEccCCceeheeecc---------------------------------------------c
Confidence 4788889999999999998877665544 1
Q ss_pred cCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCccccCCCCcEEEecCCCCce
Q 008939 483 VHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQSSSSETVLSTSSKDKPL 536 (548)
Q Consensus 483 ~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~~~~~~~v~~~s~d~~~l 536 (548)
.|...+..+.|+|. +|++++.||.|.|||..+.........-...+|-|+...|
T Consensus 230 ~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 230 LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred ccccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCCCCee
Confidence 23344889999997 4999999999999998873332111111222555666543
No 146
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.6e-20 Score=178.24 Aligned_cols=279 Identities=14% Similarity=0.206 Sum_probs=214.5
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
...++++.|+|. ...|++++.||.++||.++.+.. +.+...+ ....+|.+.+|.|+|...+++++..
T Consensus 213 ~~~I~sv~FHp~---~plllvaG~d~~lrifqvDGk~N----~~lqS~~------l~~fPi~~a~f~p~G~~~i~~s~rr 279 (514)
T KOG2055|consen 213 HGGITSVQFHPT---APLLLVAGLDGTLRIFQVDGKVN----PKLQSIH------LEKFPIQKAEFAPNGHSVIFTSGRR 279 (514)
T ss_pred cCCceEEEecCC---CceEEEecCCCcEEEEEecCccC----hhheeee------eccCccceeeecCCCceEEEecccc
Confidence 357888888888 66899999999999999986322 2222233 2578899999999998788899999
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec-CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~ 331 (548)
..++.||+.+.... .. ....++ +..+..+..++++++|+..+..|.|.+....++
T Consensus 280 ky~ysyDle~ak~~-k~-----------------------~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 280 KYLYSYDLETAKVT-KL-----------------------KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred eEEEEeeccccccc-cc-----------------------cCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh
Confidence 99999999763211 11 111111 256778899999999999999999999999999
Q ss_pred eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeE--EEEEecCCCCCCCCCCccceeE
Q 008939 332 QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS--GVAFDSYWSQPNSDGTAETVMY 409 (548)
Q Consensus 332 ~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~--~v~~~p~~~~~~~dg~~~~~~~ 409 (548)
+.+..++ ..+.|..++|+.|++.|++.+.+|.|.+||++...+++++. ..+.|. .++.++ +| .
T Consensus 336 eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~-D~G~v~gts~~~S~-------ng------~ 400 (514)
T KOG2055|consen 336 ELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV-DDGSVHGTSLCISL-------NG------S 400 (514)
T ss_pred hhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe-ecCccceeeeeecC-------CC------c
Confidence 9998887 46889999999999999999999999999999999999887 445554 445556 77 7
Q ss_pred EEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCee
Q 008939 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLS 489 (548)
Q Consensus 410 ~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~ 489 (548)
+|++|+..|.|.|||..+...- ...+|+..+..-...|+
T Consensus 401 ylA~GS~~GiVNIYd~~s~~~s-----------------------------------------~~PkPik~~dNLtt~It 439 (514)
T KOG2055|consen 401 YLATGSDSGIVNIYDGNSCFAS-----------------------------------------TNPKPIKTVDNLTTAIT 439 (514)
T ss_pred eEEeccCcceEEEeccchhhcc-----------------------------------------CCCCchhhhhhhheeee
Confidence 9999999999999997653210 12245555555567899
Q ss_pred EEEEeCCe----EEEEECCCeEEEEeCCCCCc-cccCC------CCcEEEecCCCCceEeeecccc
Q 008939 490 GLIFTQES----VLTVCREGHIKIWMRPGVAE-SQSSS------SETVLSTSSKDKPLLSSKVVTS 544 (548)
Q Consensus 490 ~l~fspd~----l~t~s~Dg~I~iW~~~~~~~-~~~~~------~~~v~~~s~d~~~l~s~~~~g~ 544 (548)
+|.|++|. |++-..+..+|+-.++.... ..++. ...-++|||.+-+||.|+.+|-
T Consensus 440 sl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 440 SLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred eeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 99999984 45556788999999998662 22221 1223499999999999998864
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.7e-19 Score=176.58 Aligned_cols=245 Identities=18% Similarity=0.194 Sum_probs=191.4
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecC-CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFS-NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~-~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
...|.+++|+.+...+|.+-.+ .|.||++...- -....++.+ +..+-.++|.+ +..|++.+.+|.|..||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w-~~~~vi~g~~drsIE~L~W~e----~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW-FLEPVIHGPEDRSIESLAWAE----GGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc-eeeEEEecCCCCceeeEEEcc----CCeEEeecCCceEEEEeccc
Confidence 4578899999999999988766 99999998632 233344443 34788999994 66799999999999999987
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
+++..... ...+.|++++.+|.+. .++.|+.||.++.++...+. .
T Consensus 100 -----lk~~~~~d-------~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~-I--------------------- 144 (691)
T KOG2048|consen 100 -----LKQKYNID-------SNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDK-I--------------------- 144 (691)
T ss_pred -----CceeEEec-------CCCcceeEEEeCCccc-eEEeecCCceEEEEecCCce-E---------------------
Confidence 23332211 2578999999999998 99999999977777765421 0
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee--------cCCceEEEEEccCCCEEEEE
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--------YYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~--------~~~~v~~l~~spdg~~l~sg 359 (548)
..-..+...++.|.+++|+|++..|+.|+.||.|++||..++..+..... ..--|.++.|-.|+ .|++|
T Consensus 145 --~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg 221 (691)
T KOG2048|consen 145 --TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG 221 (691)
T ss_pred --EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe
Confidence 00112222358899999999999999999999999999998876652111 22246677777665 68999
Q ss_pred eCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 360 GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 360 s~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
..-|.|++||...+.+++.+..|.+.|.+++..+ ++ .+++++|.|+.|..+-..+...
T Consensus 222 DS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-------~~------d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 222 DSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-------NE------DRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred cCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-------CC------CeEEEccCCCceEEEEecCCcc
Confidence 9999999999999999999999999999999988 76 6899999999999998877643
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=1.2e-19 Score=165.23 Aligned_cols=253 Identities=17% Similarity=0.233 Sum_probs=180.0
Q ss_pred eEEeCCCCCEEEEecCC-eEEEEEccCCC--C--------CCeEEEec-CCCCceEEEec----CCCCCCceEEEEEcCC
Q 008939 135 NTNFDGKGTYIIFNVGD-AIFISDLNSQD--K--------DPIKSIHF-SNSNPVCHAFD----QDAKDGHDLLIGLNSG 198 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d-~v~vwd~~~~~--~--------~~i~~~~~-~~~~~~~~~~~----p~~~~~~~l~~g~~dg 198 (548)
.+.|+|||..|++.+.| .+.+|++.... + .....+++ .+..+...+|- .+.++..++++.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 47999999999998887 99999986421 0 11222222 23344444443 2223478999999999
Q ss_pred cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccce
Q 008939 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
-|++||.-+. +.-.....+.... .-....+++|+|||+ .|++|. ...|++||+...+.-...++.....
T Consensus 134 PIh~wdaftG-----~lraSy~~ydh~d--e~taAhsL~Fs~DGe-qlfaGy-krcirvFdt~RpGr~c~vy~t~~~~-- 202 (406)
T KOG2919|consen 134 PIHLWDAFTG-----KLRASYRAYDHQD--EYTAAHSLQFSPDGE-QLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKG-- 202 (406)
T ss_pred ceeeeecccc-----ccccchhhhhhHH--hhhhheeEEecCCCC-eEeecc-cceEEEeeccCCCCCCcchhhhhcc--
Confidence 9999998762 2111111111111 123456899999999 666654 5799999996545433333322211
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEE
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
-.+..+-|.+++|+| +.+.++.++--..+-||.-..+.++..+-+|.+.|+.+.|.++|+.|+
T Consensus 203 ----------------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lf 266 (406)
T KOG2919|consen 203 ----------------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLF 266 (406)
T ss_pred ----------------cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeec
Confidence 012247789999999 667999999888999999888899999999999999999999999999
Q ss_pred EEeC-CCeEEEEECCCc-eeEEeccCCCC-CeEEEEE--ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 358 TGGE-DDLVQVWSMEDR-KVVAWGEGHNS-WVSGVAF--DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 358 sgs~-dg~I~vwd~~~~-~~~~~~~~h~~-~V~~v~~--~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+|.. |..|..||++.. .++..+..|.. .=..|.| .| +| .+|++|+.||.|++||++.
T Consensus 267 sGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-------~~------~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 267 SGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-------KG------EILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-------CC------ceeeccCCCccEEEEecCC
Confidence 9986 789999999874 56777777765 3334555 45 66 7999999999999999986
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=1e-19 Score=179.14 Aligned_cols=277 Identities=14% Similarity=0.123 Sum_probs=189.8
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
..+-.|.+.|..+.|-|....|+..++| ++++||++.....-......|...+..++|.|.. ...+++|+.||.|.|
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n--~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN--PAVFCTGGRDGEILL 171 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCC--CcceeeccCCCcEEE
Confidence 5677899999999999977788888888 9999999986533334467788999999999984 568999999999999
Q ss_pred EEeeecccccccc---------------eeeeeeeccCCcccCcceEE---EEEecCCCcEEEEEeC-CCcEEEEEcCCC
Q 008939 203 VSLRQQLQDVGKK---------------LVGAHHYNKDGSVNNSRCTS---VTWVPGGDGAFVVGHA-DGNLYVYEKSKD 263 (548)
Q Consensus 203 wdl~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~v~~---l~~~p~~~~~l~s~~~-dg~v~vwd~~~~ 263 (548)
||++....+.... ......-.+....+...|.. +.+..|.. .||+++. |+.|+|||+++.
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeeccc
Confidence 9998643111000 00000001111223334444 44445555 6888776 999999999974
Q ss_pred CCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe--EEEeeeecC
Q 008939 264 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ--LICGGKSYY 341 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~ 341 (548)
......-+...+.. +.. ....-.+.++.....|.+|++.+.|+.|..||+.... .+..+.++.
T Consensus 251 ~~~~r~ep~~~~~~-------------~t~--skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~ 315 (720)
T KOG0321|consen 251 YTAYRQEPRGSDKY-------------PTH--SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL 315 (720)
T ss_pred ccccccCCCcccCc-------------cCc--ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc
Confidence 33222111110000 000 0002457778888888888887789999999997543 233333332
Q ss_pred C--ceEEEEEccCCCEEEEEeCCCeEEEEECCCce-eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 342 G--ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 342 ~--~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~-~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
. --..-..+||+.+|++|+.|...++|.+.+.+ ....+.+|.-.|++++|.| ...+ -+++|+.|-
T Consensus 316 ~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p-----S~~t-------~v~TcSdD~ 383 (720)
T KOG0321|consen 316 NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP-----SATT-------PVATCSDDF 383 (720)
T ss_pred cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc-----ccCC-------CceeeccCc
Confidence 1 11223478999999999999999999998864 4667789999999999987 1122 588889999
Q ss_pred eEEEEECCCCeE
Q 008939 419 RLLLWDLEMDEI 430 (548)
Q Consensus 419 ~i~lwd~~~~~~ 430 (548)
.+++|++..+.+
T Consensus 384 ~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 384 RVKIWRLSNGLE 395 (720)
T ss_pred ceEEEeccCchh
Confidence 999999966544
No 150
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.1e-21 Score=199.33 Aligned_cols=275 Identities=17% Similarity=0.265 Sum_probs=205.6
Q ss_pred eEEEEEcc--CCCC--CCeEEEecCCCCceEEEecCCCCC-CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCC
Q 008939 152 AIFISDLN--SQDK--DPIKSIHFSNSNPVCHAFDQDAKD-GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDG 226 (548)
Q Consensus 152 ~v~vwd~~--~~~~--~~i~~~~~~~~~~~~~~~~p~~~~-~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 226 (548)
++.||.+. .... +++-.+. .......++|.+...+ ..+|+.|..||.|.+||....+......++. ..
T Consensus 40 slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la------~~ 112 (1049)
T KOG0307|consen 40 SLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLA------TK 112 (1049)
T ss_pred ccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHh------hh
Confidence 44555444 3221 3444444 4568899999998442 1258888999999999987632222222221 12
Q ss_pred cccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 227 SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 227 ~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
..|.+.|..+.|++...++|++|..||.|.|||+.+... ...+. . ..-...|.+++
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t-P~~~~--~---------------------~~~~~eI~~ls 168 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET-PFTPG--S---------------------QAPPSEIKCLS 168 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC-CCCCC--C---------------------CCCcccceEec
Confidence 248999999999999998999999999999999987221 11111 0 00127799999
Q ss_pred ECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCC--ceEEEEEccCCC-EEEEEeCCC---eEEEEECCCc-eeEEe
Q 008939 307 FST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG--ALLCCAWSMDGK-YILTGGEDD---LVQVWSMEDR-KVVAW 378 (548)
Q Consensus 307 ~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~l~~spdg~-~l~sgs~dg---~I~vwd~~~~-~~~~~ 378 (548)
|+. ..+.|++++.+|.+.|||++..+.+..+..+.+ .+..++|+|+.- .|+++++|. .|.+||++.- .+++.
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 997 456789999999999999998887777665543 477899999874 566776654 6999999864 57888
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCee
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVC 458 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 458 (548)
+++|...|.+|.|++. |. .+|+|++.|+.|.+|+.++++.+..+..
T Consensus 249 ~~~H~~GilslsWc~~------D~------~lllSsgkD~~ii~wN~~tgEvl~~~p~---------------------- 294 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQ------DP------RLLLSSGKDNRIICWNPNTGEVLGELPA---------------------- 294 (1049)
T ss_pred hcccccceeeeccCCC------Cc------hhhhcccCCCCeeEecCCCceEeeecCC----------------------
Confidence 8999999999999982 43 6899999999999999999998866543
Q ss_pred eecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEeCCCCC
Q 008939 459 PVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 459 ~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~~~ 516 (548)
..+.+..+.|+|. .++.++-||.|-|+.+.+..
T Consensus 295 -------------------------~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 295 -------------------------QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -------------------------CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 3567899999995 48899999999999987755
No 151
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=2.4e-19 Score=160.79 Aligned_cols=306 Identities=15% Similarity=0.157 Sum_probs=202.0
Q ss_pred eEEEEEccCCCCCCeEEEe-cCCCCceEEEecCCCCCCceEEEEEcC-------CcEEEEEeeecccccccceeeeeeec
Q 008939 152 AIFISDLNSQDKDPIKSIH-FSNSNPVCHAFDQDAKDGHDLLIGLNS-------GDVYSVSLRQQLQDVGKKLVGAHHYN 223 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~-~~~~~~~~~~~~p~~~~~~~l~~g~~d-------g~I~iwdl~~~~~~~~~~~~~~~~~~ 223 (548)
.|.+.+++.+........- .+.+.|..++-+|. +...|+++..+ -.+.||.+...+............
T Consensus 41 qVhll~~d~e~s~l~skvf~h~agEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~-- 116 (370)
T KOG1007|consen 41 QVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA-- 116 (370)
T ss_pred eeEEEEecCccchhhhhhhhcCCcceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh--
Confidence 6777777765544443333 35678888888887 34566666553 126789887643221111110000
Q ss_pred cCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeE
Q 008939 224 KDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSIN 303 (548)
Q Consensus 224 ~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 303 (548)
.-...+-+.|.|+.|.|++. .+++-. |..|.+|++.............. -..|+...+
T Consensus 117 ~Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~--------------------s~e~~~~ft 174 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSE--------------------SAEMRHSFT 174 (370)
T ss_pred cCCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheeecccc--------------------cccccceec
Confidence 00112456899999999988 566544 88999999986332111111000 011346678
Q ss_pred EEEECC--CCCEEEEEECCCeEEEEeCCCCeEEEee-eecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCC-ceeEEe
Q 008939 304 SIAFST--DGTYLATVGRDGYLRVFDYSKEQLICGG-KSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMED-RKVVAW 378 (548)
Q Consensus 304 ~~~~sp--~g~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~-~~~~~~ 378 (548)
+-+|+| +++.+++. .|++++.||+++.+....+ .+|...|..+.|.|+-+ +|++|++|+.|+|||.+. ..++..
T Consensus 175 sg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e 253 (370)
T KOG1007|consen 175 SGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE 253 (370)
T ss_pred ccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence 889999 78878776 5899999999988765544 56888899999999876 588999999999999986 458899
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCee
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVC 458 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 458 (548)
+.+|..||++|.|+|. -. .+|++++.|..|.+|....-.....++....... .++.
T Consensus 254 l~~HsHWvW~VRfn~~------hd------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese---~e~~--------- 309 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPE------HD------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE---SEDE--------- 309 (370)
T ss_pred cCCCceEEEEEEecCc------cc------eEEEecCCCceeEEEecccccccccccccccccc---Ccch---------
Confidence 9999999999999982 22 6999999999999998765433333322110000 0000
Q ss_pred eecccCCCCceeecCCCCceEEeecCCCCeeEEEEeC-C--eEEEEECCCeEEEEeCCC
Q 008939 459 PVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ-E--SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 459 ~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp-d--~l~t~s~Dg~I~iW~~~~ 514 (548)
+..-+.. .-....+.++..|++.|++++|+. | .+++-+.||.+.|=.++.
T Consensus 310 -----dseer~k-pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 310 -----DSEERVK-PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred -----hhHHhcc-cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0000000 011124566778999999999987 3 488999999999877764
No 152
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.3e-19 Score=161.72 Aligned_cols=282 Identities=16% Similarity=0.234 Sum_probs=207.5
Q ss_pred ceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 133 MTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
..++.|++.|.+++.+..+ .|.|||+.+ ...-+.+..|-..+.|++|+++ |+.|++++.|..|.+||+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T--~~iar~lsaH~~pi~sl~WS~d---gr~LltsS~D~si~lwDl~~g--- 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT--FRIARMLSAHVRPITSLCWSRD---GRKLLTSSRDWSIKLWDLLKG--- 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc--cchhhhhhccccceeEEEecCC---CCEeeeecCCceeEEEeccCC---
Confidence 5689999999999999888 999999998 4477777788889999999999 889999999999999999872
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNP 291 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (548)
. +....+ ...+|+.+.|+|...+.+++.-.+..-.+-++... ...+-+..+....
T Consensus 98 --s-~l~rir-------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~---~h~~Lp~d~d~dl------------ 152 (405)
T KOG1273|consen 98 --S-PLKRIR-------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP---KHSVLPKDDDGDL------------ 152 (405)
T ss_pred --C-ceeEEE-------ccCccceeeeccccCCeEEEEEecCCcEEEEecCC---ceeeccCCCcccc------------
Confidence 2 222233 47899999999988877777777777777776531 1111111111000
Q ss_pred eeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecC-CceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 008939 292 IARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-GALLCCAWSMDGKYILTGGEDDLVQVWSM 370 (548)
Q Consensus 292 ~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~sgs~dg~I~vwd~ 370 (548)
...-.+..|.+.|+++++|...|.+.++|.++-+++..++-.. ..|..+.++..|+.|+.-+.|+.|+.|++
T Consensus 153 -------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 153 -------NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred -------ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 0112233688999999999999999999999999998887666 78999999999999999999999999998
Q ss_pred CCc-------e--eEEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC
Q 008939 371 EDR-------K--VVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL 439 (548)
Q Consensus 371 ~~~-------~--~~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~ 439 (548)
++- + +.+.++. ..-.=.+++|+. ||. +.+++...-..++||.-..|.++..+..
T Consensus 226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-------dge-----Yv~a~s~~aHaLYIWE~~~GsLVKILhG--- 290 (405)
T KOG1273|consen 226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-------DGE-----YVCAGSARAHALYIWEKSIGSLVKILHG--- 290 (405)
T ss_pred hhhcccCccCCcChhHHHHHHHhhhhhhheeecC-------Ccc-----EEEeccccceeEEEEecCCcceeeeecC---
Confidence 631 1 1122221 111224667776 772 4444455567899999998888776654
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
...+...++.|+|-. |++- ..|.++||...
T Consensus 291 -------------------------------------------~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 291 -------------------------------------------TKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred -------------------------------------------Cchhheeecccccceeeeeec-cCCceEEEEee
Confidence 112456788898854 4444 77999999843
No 153
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=1.7e-19 Score=179.20 Aligned_cols=358 Identities=13% Similarity=0.126 Sum_probs=248.2
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccC-CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNS-QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
...-..+-|+|++..+++.+.. ..++|--+. ....+...+..|-+.|..++|+|. |.+|++.+.|-+-+++-.-.
T Consensus 316 a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~ps---GeflLsvs~DQTTRlFa~wg 392 (764)
T KOG1063|consen 316 AGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPS---GEFLLSVSLDQTTRLFARWG 392 (764)
T ss_pred ccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCC---CCEEEEeccccceeeecccc
Confidence 3445678899999888876654 999998322 122344455678889999999999 88999999999999886441
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCC---------CCCC---C------CC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK---------DGAG---D------SS 269 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~---------~~~~---~------~~ 269 (548)
++..- +-.....+|...++|++|.+... .|++|.....+|+|+..+ .+.. . ..
T Consensus 393 ------~q~~w--HEiaRPQiHGyDl~c~~~vn~~~-~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~ 463 (764)
T KOG1063|consen 393 ------RQQEW--HEIARPQIHGYDLTCLSFVNEDL-QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGAN 463 (764)
T ss_pred ------cccce--eeecccccccccceeeehccCCc-eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccc
Confidence 11110 00012235889999999999644 799999999999999854 0100 0 00
Q ss_pred cccccccc-eee---------------ee--cCCC--------------CCCCCeeEeeecCCCeEEEEECCCCCEEEEE
Q 008939 270 FPVIKDQT-QFS---------------VA--HPRY--------------SKSNPIARWHICQGSINSIAFSTDGTYLATV 317 (548)
Q Consensus 270 ~~~~~~~~-~~~---------------~~--~~~~--------------~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 317 (548)
.+.+.... .+. .. .... -.-..++.+-+|...|.+++.+|+++++|++
T Consensus 464 VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASa 543 (764)
T KOG1063|consen 464 VPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASA 543 (764)
T ss_pred cccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeeh
Confidence 01000000 000 00 0000 0122345667899999999999999999998
Q ss_pred ECC-----CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce----eEEeccCCCCCeEE
Q 008939 318 GRD-----GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK----VVAWGEGHNSWVSG 388 (548)
Q Consensus 318 ~~d-----g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~----~~~~~~~h~~~V~~ 388 (548)
... -.|++|+..+...+..+.+|.-.|+.++|||||++|++.+.|+++.+|...... .....+.|...|+.
T Consensus 544 CKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWd 623 (764)
T KOG1063|consen 544 CKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWD 623 (764)
T ss_pred hhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEE
Confidence 754 459999999888888899999999999999999999999999999999885432 23346789999999
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC--eEEeee---ecCCCCCCceecCCCCccccCCeeeeccc
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD--EIVVPL---RRGPLGGSPTFSTGSQSAHWDNVCPVGTL 463 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~g~~ 463 (548)
..|+| ++ .+|+|++.|..|++|..... +.+..+ +.....+.+.+.+-.. ..-...+.+|..
T Consensus 624 csW~p-------de------~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~-~e~~~~vavGle 689 (764)
T KOG1063|consen 624 CSWSP-------DE------KYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDH-NEKGDVVAVGLE 689 (764)
T ss_pred cccCc-------cc------ceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccc-ccccceEEEEec
Confidence 99999 88 67999999999999998876 333332 2223333333332210 111124577777
Q ss_pred CCCCceeecCCC------------CceEEeecCCCCeeEEEEeCC------------eEEEEECCCeEEEEeCC
Q 008939 464 QPAPSMRDVPKL------------SPLVAHRVHTEPLSGLIFTQE------------SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 464 ~~~~~~~d~~~~------------~~~~~~~~h~~~V~~l~fspd------------~l~t~s~Dg~I~iW~~~ 513 (548)
.+.+.+|..+.. ..+....+|.+.|+.+.|.|. .|+.|++|-.+||+++.
T Consensus 690 ~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 690 KGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 788888875411 122233467888999999973 17999999999999864
No 154
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=9.7e-19 Score=153.31 Aligned_cols=257 Identities=18% Similarity=0.231 Sum_probs=185.7
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc----cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD----VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
.+..-+++|. +++|++|..+|+|.++.+...... +++...-.. ..|.++|+.++|..+ +|++|+
T Consensus 12 tvf~qa~sp~---~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~e------qahdgpiy~~~f~d~---~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPS---KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPE------QAHDGPIYYLAFHDD---FLLSGG 79 (325)
T ss_pred HHHHHhhCCc---ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeec------cccCCCeeeeeeehh---heeecc
Confidence 3455577887 789999999999999998764222 222222111 248999999999832 566554
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
||.|+-|..+.........+..+. ..|.+.=...--.|++|...|..+-+++++.|+.+..||+++
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~-------------~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~ 145 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEV-------------KIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED 145 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhh-------------cCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC
Confidence 599999987653321111111110 011111011125689999999777777777999999999999
Q ss_pred CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC---------C-CCCeEEEEEecCCCCCCC
Q 008939 331 EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG---------H-NSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~---------h-~~~V~~v~~~p~~~~~~~ 400 (548)
|+....+++|.+.|.++.--.....+++|++||++++||.++++++..+.. | ..||-+++-+.
T Consensus 146 G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e------- 218 (325)
T KOG0649|consen 146 GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE------- 218 (325)
T ss_pred CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC-------
Confidence 999999999999999999854445689999999999999999998877652 2 35778888754
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEE
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA 480 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~ 480 (548)
.+|+.| ....+.+|.++..++...+..
T Consensus 219 --------dWlvCG-gGp~lslwhLrsse~t~vfpi-------------------------------------------- 245 (325)
T KOG0649|consen 219 --------DWLVCG-GGPKLSLWHLRSSESTCVFPI-------------------------------------------- 245 (325)
T ss_pred --------ceEEec-CCCceeEEeccCCCceEEEec--------------------------------------------
Confidence 356544 457899999999887765543
Q ss_pred eecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCCccccC
Q 008939 481 HRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQSS 521 (548)
Q Consensus 481 ~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~~~~~~ 521 (548)
..+|..+.|-.|.+++++.-..|.-|.+.+....+.+
T Consensus 246 ----pa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gvl~a~ip 282 (325)
T KOG0649|consen 246 ----PARVHLVDFVDDCVLIGGEGNHVQSYTLNGVLQANIP 282 (325)
T ss_pred ----ccceeEeeeecceEEEeccccceeeeeeccEEEEecc
Confidence 3568888999999999999999999998876644443
No 155
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.3e-18 Score=176.09 Aligned_cols=365 Identities=17% Similarity=0.205 Sum_probs=255.2
Q ss_pred EEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc----c
Q 008939 136 TNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ----D 211 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~----~ 211 (548)
..|++|+++++...++.|.||...++. +++.+..+...++.+.+.|....-.++++++.+|.|++||...... +
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~--~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGE--CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHh--hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 578999999999999999999999966 9999999999999999999866457889999999999999765200 0
Q ss_pred cc-c------------------------ceeeee---------------------------------eeccCC-------
Q 008939 212 VG-K------------------------KLVGAH---------------------------------HYNKDG------- 226 (548)
Q Consensus 212 ~~-~------------------------~~~~~~---------------------------------~~~~~~------- 226 (548)
.. + ...... .++..+
T Consensus 100 ~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~ 179 (792)
T KOG1963|consen 100 NNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH 179 (792)
T ss_pred cCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE
Confidence 00 0 000000 000000
Q ss_pred ----------------------cccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 227 ----------------------SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 227 ----------------------~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
..|.-.++|.+++|.+. +++++..||.|.+|.--..
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~--------------------- 237 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGS--------------------- 237 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEecccc---------------------
Confidence 01556689999999999 9999999999999974321
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
.........|+.|...|++++|+++|.+|++|+..+.+.+|.+.+++ ..-+..-.++|..+.++||+.+.+...+|+.
T Consensus 238 -~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNq 315 (792)
T KOG1963|consen 238 -SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQ 315 (792)
T ss_pred -ccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCce
Confidence 01234567899999999999999999999999999999999999988 4445667789999999999999999999999
Q ss_pred EEEEECCCceeEEeccC-----------CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 365 VQVWSMEDRKVVAWGEG-----------HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~-----------h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
|.+..+.+......+.+ ..+-.+.++++| .- +.++-.+..+.|.+||+-+...+..
T Consensus 316 I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-------r~------~~~vln~~~g~vQ~ydl~td~~i~~ 382 (792)
T KOG1963|consen 316 IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-------RT------NSLVLNGHPGHVQFYDLYTDSTIYK 382 (792)
T ss_pred EEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-------CC------CceeecCCCceEEEEeccccceeee
Confidence 99998866544333332 234567788887 22 4688889999999999999888766
Q ss_pred eecC----CCCC--------CceecCCCCccccCCee-----eeccc--CCCCceeecCCCCceE-----EeecCCCCee
Q 008939 434 LRRG----PLGG--------SPTFSTGSQSAHWDNVC-----PVGTL--QPAPSMRDVPKLSPLV-----AHRVHTEPLS 489 (548)
Q Consensus 434 ~~~~----~~~~--------~~~~~~~~~~~~~d~~~-----~~g~~--~~~~~~~d~~~~~~~~-----~~~~h~~~V~ 489 (548)
++.. ..+. .++.+.. +.|-.++ ..... .-.+++|.......-. ....|...+.
T Consensus 383 ~~v~~~n~~~~~~n~~v~itav~~~~~---gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~v 459 (792)
T KOG1963|consen 383 LQVCDENYSDGDVNIQVGITAVARSRF---GSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFV 459 (792)
T ss_pred EEEEeecccCCcceeEEeeeeehhhcc---ceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeE
Confidence 6432 1111 1111111 1221111 11111 2245556543332222 2236888777
Q ss_pred EEEEeC----CeEEEEECCCeEEEEeCCCCCcccc----------C--CCCc--EEEecCCCCceEeeecc
Q 008939 490 GLIFTQ----ESVLTVCREGHIKIWMRPGVAESQS----------S--SSET--VLSTSSKDKPLLSSKVV 542 (548)
Q Consensus 490 ~l~fsp----d~l~t~s~Dg~I~iW~~~~~~~~~~----------~--~~~~--v~~~s~d~~~l~s~~~~ 542 (548)
..+|.+ ++++|++.||.++||-+.+.+.... + |... ..+|+.||..|+.+...
T Consensus 460 at~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~ 530 (792)
T KOG1963|consen 460 ATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDD 530 (792)
T ss_pred EEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCC
Confidence 777765 3699999999999999854432111 1 1222 22788999988888655
No 156
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=3.9e-19 Score=174.60 Aligned_cols=205 Identities=16% Similarity=0.191 Sum_probs=131.7
Q ss_pred ccCCCCCCceeEEeCCC-CCEEEEecCC-eEEEEEccCCCCCCe----EEEecCCCCceEEEecCCCCCCceEEEEEcCC
Q 008939 125 GASSSSTSMTNTNFDGK-GTYIIFNVGD-AIFISDLNSQDKDPI----KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG 198 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~-g~~l~~~~~d-~v~vwd~~~~~~~~i----~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg 198 (548)
...+|...|+.+.|+|- ..+|++++.| .|+||.+..+....+ ..+-..+-.+-|+.|+|...+ |++....|
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg---il~s~a~g 150 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG---ILASGAHG 150 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc---eEEeccCc
Confidence 45689999999999995 4466678888 999999996553333 112223346789999999543 77788889
Q ss_pred cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccce
Q 008939 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
.++|||+.++ +.++.. ..|.+.|.++.|+.||. +|++++.|.+|+|||.+...
T Consensus 151 ~v~i~D~stq-----k~~~el-------~~h~d~vQSa~WseDG~-llatscKdkqirifDPRa~~-------------- 203 (1012)
T KOG1445|consen 151 SVYITDISTQ-----KTAVEL-------SGHTDKVQSADWSEDGK-LLATSCKDKQIRIFDPRASM-------------- 203 (1012)
T ss_pred eEEEEEcccC-----ceeecc-------cCCchhhhccccccCCc-eEeeecCCcceEEeCCccCC--------------
Confidence 9999999873 333221 24899999999999999 99999999999999998643
Q ss_pred eeeecCCCCCCCCeeEeeecCCC-eEEEEECCCCCEEEEEECC----CeEEEEeCCCC-eEEEeeee-cCCceEEEEEcc
Q 008939 279 FSVAHPRYSKSNPIARWHICQGS-INSIAFSTDGTYLATVGRD----GYLRVFDYSKE-QLICGGKS-YYGALLCCAWSM 351 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~g~~l~s~~~d----g~v~vwd~~~~-~~~~~~~~-~~~~v~~l~~sp 351 (548)
.+++..++|.+. =..+.|--+-..|++.+.+ ..|++||.+.- ..+.++.- ..-.|.---|.|
T Consensus 204 -----------~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~Dp 272 (1012)
T KOG1445|consen 204 -----------EPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDP 272 (1012)
T ss_pred -----------CccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecC
Confidence 445555555432 1234555443344444332 56788887642 22222221 112233344566
Q ss_pred CCCEEEEE-eCCCeEEEEEC
Q 008939 352 DGKYILTG-GEDDLVQVWSM 370 (548)
Q Consensus 352 dg~~l~sg-s~dg~I~vwd~ 370 (548)
|.++|+.+ -.+..|..+.+
T Consensus 273 Dt~llfLaGKG~~~l~~lE~ 292 (1012)
T KOG1445|consen 273 DTRLLFLAGKGTNKLFMLEM 292 (1012)
T ss_pred CCceEEEecCCcceEEEEEe
Confidence 66544433 33455555544
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=2.4e-19 Score=163.65 Aligned_cols=293 Identities=16% Similarity=0.243 Sum_probs=202.5
Q ss_pred CCCCceEEEecCCCC-CCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC---cEEE
Q 008939 172 SNSNPVCHAFDQDAK-DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD---GAFV 247 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~-~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~---~~l~ 247 (548)
++..+..++|++-.. +...+++..-...+.+|+...+. ...+++.. . +. -+......++|+-+.. -++|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~---~ir~lq~y--~-D~-d~~Esfytcsw~yd~~~~~p~la 109 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG---GIRLLQSY--A-DE-DHDESFYTCSWSYDSNTGNPFLA 109 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc---ceeeeeec--c-CC-CCCcceEEEEEEecCCCCCeeEE
Confidence 334566666764322 12233433444568888776521 11222111 1 11 2567778888876533 2888
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEE
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVF 326 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vw 326 (548)
+++.-|.|+|.|+.+ ......+.+|...|+.+.|+|+ .++|++++.|..||+|
T Consensus 110 ~~G~~GvIrVid~~~--------------------------~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVS--------------------------GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred eecceeEEEEEecch--------------------------hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 899999999999986 3456677889999999999995 5799999999999999
Q ss_pred eCCCCeEEEee---eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE--------------------------
Q 008939 327 DYSKEQLICGG---KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA-------------------------- 377 (548)
Q Consensus 327 d~~~~~~~~~~---~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~-------------------------- 377 (548)
|+++..++..+ .+|.+.|.++.|+++|.+|++++.|..|++|++...+...
T Consensus 164 nI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred eccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 99999998775 5799999999999999999999999999999997422100
Q ss_pred --eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC-CCCeEEeeeecCCC-----------CCCc
Q 008939 378 --WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL-EMDEIVVPLRRGPL-----------GGSP 443 (548)
Q Consensus 378 --~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~-~~~~~~~~~~~~~~-----------~~~~ 443 (548)
+-.-|...|-|+.|- | .++++-+-++.|..|.. +-.+.+..+..+.. ...+
T Consensus 244 fst~diHrnyVDCvrw~---------g------d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~i 308 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF---------G------DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDI 308 (385)
T ss_pred ccccccccchHHHHHHH---------h------hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccce
Confidence 112467777777774 3 58999999999999987 33333222211111 1111
Q ss_pred eecCCCCccccCCeeeecccCCCCceeecCCCCceE--Eee--cCCCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 444 TFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV--AHR--VHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 444 ~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~--~~~--~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
+|..- ....|...++.|...+.+.+||+...+|.. ++. .....|...+|+.|+ |+..++|++|.-||+-
T Consensus 309 Wfirf-~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 309 WFIRF-AFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEE-eecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 11110 123456677889999999999998877732 111 124578999999985 8899999999999964
No 158
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.8e-19 Score=162.04 Aligned_cols=289 Identities=14% Similarity=0.197 Sum_probs=195.2
Q ss_pred ceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC-CCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 189 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG-GDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 189 ~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~-~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
..++++.++|.|++||..+ ++.+. ..+.++..++.++|..+ +.+.+.+|+.||.|++||++...+
T Consensus 41 ~~vav~lSngsv~lyd~~t-----g~~l~-------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-- 106 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-----GQLLE-------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-- 106 (376)
T ss_pred eeEEEEecCCeEEEEeccc-----hhhhh-------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh--
Confidence 4699999999999999886 22221 12246788889999875 556899999999999999997432
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecC-CCeEEEEECCCCCEEEEEE----CCCeEEEEeCCCCeE-EEe-eeec
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ-GSINSIAFSTDGTYLATVG----RDGYLRVFDYSKEQL-ICG-GKSY 340 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~g~~l~s~~----~dg~v~vwd~~~~~~-~~~-~~~~ 340 (548)
.+...|..|. .+..+++..-.++.+++|+ .|-.|.+||++..+. +.. ...|
T Consensus 107 ----------------------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH 164 (376)
T KOG1188|consen 107 ----------------------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESH 164 (376)
T ss_pred ----------------------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhc
Confidence 2233344443 4666777766777888775 467899999997765 433 4679
Q ss_pred CCceEEEEEccCC-CEEEEEeCCCeEEEEECCCce----eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe
Q 008939 341 YGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRK----VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415 (548)
Q Consensus 341 ~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~----~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~ 415 (548)
...|+++.|+|.. ++|++|+.||.|.|||+.... ++..+ .|...|..+.|.. ++ +..|.+-+
T Consensus 165 ~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~-------~~-----ykrI~clT 231 (376)
T KOG1188|consen 165 NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLS-------KK-----YKRIMCLT 231 (376)
T ss_pred cCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeec-------CC-----cceEEEEE
Confidence 9999999999955 689999999999999997642 23333 4888999999986 55 14688889
Q ss_pred CCCeEEEEECCCCeEEeeeecCCCCC-------CceecCCCC-ccccCCeeeecccCCCCceeec------CCCCceEEe
Q 008939 416 QDTRLLLWDLEMDEIVVPLRRGPLGG-------SPTFSTGSQ-SAHWDNVCPVGTLQPAPSMRDV------PKLSPLVAH 481 (548)
Q Consensus 416 ~Dg~i~lwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~d~~~~~g~~~~~~~~~d~------~~~~~~~~~ 481 (548)
.+....+|+++.+.+...++.+.... ...+-.+.- ...-+.-...|..-+...++-+ ....++..+
T Consensus 232 H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l 311 (376)
T KOG1188|consen 232 HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAIL 311 (376)
T ss_pred ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccc
Confidence 99999999999888665554320000 000000000 0011111122222222233222 234566667
Q ss_pred ec-CCCCeeEEEEeC--CeEEEEECCCeEEEEeCCCCCccccCCCCcE
Q 008939 482 RV-HTEPLSGLIFTQ--ESVLTVCREGHIKIWMRPGVAESQSSSSETV 526 (548)
Q Consensus 482 ~~-h~~~V~~l~fsp--d~l~t~s~Dg~I~iW~~~~~~~~~~~~~~~v 526 (548)
++ |.+.|+++.|.. +.+.||++||.+++|..+...+..+.-.+..
T Consensus 312 ~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da~e~~~s~~esl 359 (376)
T KOG1188|consen 312 QGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDATEINFSWTESL 359 (376)
T ss_pred cCCcHHHHHHHhhhcccceeeccCCCceEEEEecCCcccccccccccc
Confidence 76 777888888875 4699999999999999866555555444433
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.4e-19 Score=173.10 Aligned_cols=217 Identities=17% Similarity=0.220 Sum_probs=177.9
Q ss_pred eeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc
Q 008939 134 TNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV 212 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~ 212 (548)
.|++......+++.++.. .|+|||++. +..++.+..|.+.|+|+.|+.. ..+|++++..|+|.|..+.+.
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~--kl~hr~lkdh~stvt~v~YN~~---DeyiAsvs~gGdiiih~~~t~---- 153 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRA--KLIHRFLKDHQSTVTYVDYNNT---DEYIASVSDGGDIIIHGTKTK---- 153 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHH--HHHhhhccCCcceeEEEEecCC---cceeEEeccCCcEEEEecccC----
Confidence 444444555788887765 999999996 5578888889999999999998 779999999999999998772
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCe
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 292 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (548)
.+...... .....|.-+.|+|..+.+|.+++.+|.|.+||+.. ..|+
T Consensus 154 -~~tt~f~~------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g--------------------------~sp~ 200 (673)
T KOG4378|consen 154 -QKTTTFTI------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG--------------------------MSPI 200 (673)
T ss_pred -ccccceec------CCCCeEEEeecccccceeeEeeccCCeEEEEeccC--------------------------CCcc
Confidence 11111111 13456779999999988899999999999999975 2333
Q ss_pred eEe-eecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 008939 293 ARW-HICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM 370 (548)
Q Consensus 293 ~~~-~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~ 370 (548)
..| ..|..+...++|+| +..+|++.+.|..|.+||....+....+. +..++..++|+++|.+|+.|...|.|..||+
T Consensus 201 ~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 201 FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEec
Confidence 333 56889999999999 66789999999999999999777666554 5678999999999999999999999999999
Q ss_pred CC-ceeEEeccCCCCCeEEEEEec
Q 008939 371 ED-RKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 371 ~~-~~~~~~~~~h~~~V~~v~~~p 393 (548)
+. ..++..+..|...|++|+|-|
T Consensus 280 R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 280 RSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred ccCCCCceEeeecccceeEEEeee
Confidence 86 468889999999999999987
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=5.3e-19 Score=167.45 Aligned_cols=239 Identities=17% Similarity=0.264 Sum_probs=179.2
Q ss_pred CCCEEEEecCC-eEEEEEccCCCC-CCeE------------------EEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 141 KGTYIIFNVGD-AIFISDLNSQDK-DPIK------------------SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 141 ~g~~l~~~~~d-~v~vwd~~~~~~-~~i~------------------~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
.|.++|.+..+ .|.|||+.-... .|.- ....|.+.+..++|+..- .+.|++|+.|.+|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~--~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF--RNVLASGSADKTV 268 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc--ceeEEecCCCceE
Confidence 47799999988 999999875320 1111 122466677788888774 5689999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.+||+.. ++...... .|...|.++.|+|....+|++|+.|++|.+.|.+.....
T Consensus 269 ~lWD~~~-----g~p~~s~~-------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-------------- 322 (463)
T KOG0270|consen 269 KLWDVDT-----GKPKSSIT-------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-------------- 322 (463)
T ss_pred EEEEcCC-----CCcceehh-------hcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc--------------
Confidence 9999987 33322222 389999999999998889999999999999999852211
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccCCC-EEE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGK-YIL 357 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg~-~l~ 357 (548)
-..|+. .+.|..++|.| ....+++++.||+|+-+|++.. +++.++++|.+.|.+|++++.-. +|+
T Consensus 323 -----------~~~wk~-~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 323 -----------GKEWKF-DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred -----------CceEEe-ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCccee
Confidence 112222 27899999999 4567788889999999999865 89999999999999999998654 688
Q ss_pred EEeCCCeEEEEECCCceeEEecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEE
Q 008939 358 TGGEDDLVQVWSMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~ 431 (548)
+++.|+.|++|++..-....... -.-+...|.+++| +-. ..++.|+..+.++|||+.+...+
T Consensus 391 t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~-------~~a-----~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDP-------DVA-----FTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eccccceEEEEeecCCCCcccccccccccceeecccCC-------Ccc-----eEEEecCccceEEEeecccChhH
Confidence 99999999999997544321111 1112355667766 331 58999999999999999887654
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=4.5e-16 Score=159.19 Aligned_cols=354 Identities=23% Similarity=0.345 Sum_probs=249.6
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCC-CceEEEe-cCCCCCCc-eEEEEEc-CCc
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNS-NPVCHAF-DQDAKDGH-DLLIGLN-SGD 199 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~-~~~~~~~-~p~~~~~~-~l~~g~~-dg~ 199 (548)
....|...+..+.|.+.+..++..+.+ .+.+|+..... ..+..+..... .+..+.+ .++ +. .++.... ++.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~ 135 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPD---GNSILLASSSLDGT 135 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCC---cceEEeccCCCCcc
Confidence 456788899999999999999988755 99999998743 24555554332 5666666 555 43 4444344 899
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCcccccccce
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA-DGNLYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
+.+|++... ...... . ..|...|.+++|+|++. .+++++. |+.+++|++..
T Consensus 136 ~~~~~~~~~----~~~~~~-~------~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------- 187 (466)
T COG2319 136 VKLWDLSTP----GKLIRT-L------EGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRT---------------- 187 (466)
T ss_pred EEEEEecCC----CeEEEE-E------ecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCC----------------
Confidence 999998740 011111 1 13788999999999998 7888875 99999999985
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCeEEE-eeeecCCceEEEEEccCCCEE
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQLIC-GGKSYYGALLCCAWSMDGKYI 356 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~~v~~l~~spdg~~l 356 (548)
...+..+..|...|.+++|+|++. .+++++.|+.|++||...+..+. .+..|.... ...|+|++.++
T Consensus 188 ----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 256 (466)
T COG2319 188 ----------GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLL 256 (466)
T ss_pred ----------CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEE
Confidence 234556666889999999999987 55555899999999999887777 677787765 44899999899
Q ss_pred EEEeCCCeEEEEECCCcee-EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 357 LTGGEDDLVQVWSMEDRKV-VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 357 ~sgs~dg~I~vwd~~~~~~-~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
++++.|+.+++|++..... +..+.+|...|.++.|.| ++ ..+++++.|+.+.+||+..........
T Consensus 257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~------~~~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-------DG------KLLASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred EEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-------CC------CEEEEeeCCCcEEEEEcCCCceEEEee
Confidence 9999999999999987654 444467899999999998 77 567778889899999999887766665
Q ss_pred --cCCC-CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC-eEEE-EECCCeEEEE
Q 008939 436 --RGPL-GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLT-VCREGHIKIW 510 (548)
Q Consensus 436 --~~~~-~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd-~l~t-~s~Dg~I~iW 510 (548)
.... ...+.+ ... .......+..+..+.+|+............+ ..+..+.+.++ .++. +..++.+.+|
T Consensus 324 ~~~~~~~~~~~~~-~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (466)
T COG2319 324 LKGHEGPVSSLSF-SPD----GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLW 397 (466)
T ss_pred ecccCCceEEEEE-CCC----CCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECCCCCEEEEecCCCceEEE
Confidence 2222 333344 211 1122222245566777887776633332222 22788888872 2333 7899999999
Q ss_pred eCCCCCccccCCC--CcEE--EecCCCCceEeee
Q 008939 511 MRPGVAESQSSSS--ETVL--STSSKDKPLLSSK 540 (548)
Q Consensus 511 ~~~~~~~~~~~~~--~~v~--~~s~d~~~l~s~~ 540 (548)
+............ ..+. .+++++..++++.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (466)
T COG2319 398 DLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS 431 (466)
T ss_pred ecccCeeeeeccCCCCcEEEEEECCCCcEEEEec
Confidence 9887664333221 3333 6778888777643
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=9.8e-20 Score=190.86 Aligned_cols=250 Identities=15% Similarity=0.261 Sum_probs=195.9
Q ss_pred CCCceeEEeCCCCCE----EEEecCC-eEEEEEccC----CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 130 STSMTNTNFDGKGTY----IIFNVGD-AIFISDLNS----QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~----l~~~~~d-~v~vwd~~~----~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
...-..++|.+.|.. |+.+..| .|-+||... .....+....-|.+.|..+.|++.. +++|++|..+|+|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q--~nlLASGa~~geI 141 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQ--GNLLASGADDGEI 141 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccC--CceeeccCCCCcE
Confidence 444567888887776 6666677 999999765 2234566777789999999999983 5699999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.|||+.+.. .+ +........+.|.+++|+..-.++|++++.+|.+.|||++..
T Consensus 142 ~iWDlnn~~-tP---------~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~----------------- 194 (1049)
T KOG0307|consen 142 LIWDLNKPE-TP---------FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK----------------- 194 (1049)
T ss_pred EEeccCCcC-CC---------CCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-----------------
Confidence 999998621 11 111111247889999999988889999999999999999973
Q ss_pred eecCCCCCCCCeeEeeecC--CCeEEEEECCCC-CEEEEEECCC---eEEEEeCCCC-eEEEeeeecCCceEEEEEccCC
Q 008939 281 VAHPRYSKSNPIARWHICQ--GSINSIAFSTDG-TYLATVGRDG---YLRVFDYSKE-QLICGGKSYYGALLCCAWSMDG 353 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~g-~~l~s~~~dg---~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg 353 (548)
+++..+..|. ..+..++|+|+. ..|++++.|. .|.+||++.- ..+..+++|...|.++.|++.+
T Consensus 195 ---------~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D 265 (1049)
T KOG0307|consen 195 ---------KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD 265 (1049)
T ss_pred ---------CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCC
Confidence 2222222221 347789999965 4677776554 5899999753 4567788999999999999976
Q ss_pred -CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 354 -KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 354 -~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
++|++++.|+.|.+|+.++++.+..+....+|+..+.|+|. +- .+|+.++.||.|.|+.+....
T Consensus 266 ~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr------~P------~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 266 PRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPR------NP------SVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred chhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCC------Cc------chhhhheeccceeeeeeecCC
Confidence 78999999999999999999999999988999999999982 22 479999999999999987654
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=2.3e-18 Score=156.88 Aligned_cols=251 Identities=20% Similarity=0.319 Sum_probs=182.7
Q ss_pred eEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCC---cccCcceEEEEEe-------cCCCcEE
Q 008939 177 VCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDG---SVNNSRCTSVTWV-------PGGDGAF 246 (548)
Q Consensus 177 ~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~l~~~-------p~~~~~l 246 (548)
....|+|+ |..|++-+.|..+.+|++...+...... ....+.+.. ......|++.+|- |+.. ++
T Consensus 53 kgckWSPD---GSciL~~sedn~l~~~nlP~dlys~~~~--~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l~ 126 (406)
T KOG2919|consen 53 KGCKWSPD---GSCILSLSEDNCLNCWNLPFDLYSKKAD--GPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-LF 126 (406)
T ss_pred ccceeCCC---CceEEeecccCeeeEEecChhhcccCCC--CccccccceeEEeccCCEEEEEEeeeccccCCCccc-ee
Confidence 45679999 8899999999999999997643222100 000011110 1246778888886 4555 99
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 008939 247 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVF 326 (548)
Q Consensus 247 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vw 326 (548)
++.+.+.-|++||.-+ +..+..+......+.+ ..-.+++|+|||.+|+.|. ...|++|
T Consensus 127 a~ssr~~PIh~wdaft-G~lraSy~~ydh~de~--------------------taAhsL~Fs~DGeqlfaGy-krcirvF 184 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFT-GKLRASYRAYDHQDEY--------------------TAAHSLQFSPDGEQLFAGY-KRCIRVF 184 (406)
T ss_pred eeccccCceeeeeccc-cccccchhhhhhHHhh--------------------hhheeEEecCCCCeEeecc-cceEEEe
Confidence 9999999999999876 6666555544332222 3456899999999999875 6789999
Q ss_pred eC-CCCeE--EEe-----eeecCCceEEEEEccCC-CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCC
Q 008939 327 DY-SKEQL--ICG-----GKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQ 397 (548)
Q Consensus 327 d~-~~~~~--~~~-----~~~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 397 (548)
|+ +.|+- +.. -.+..+-+.|++|+|-. +.+++|+-...+-||.-..++++..+.+|.+.|+.+.|++
T Consensus 185 dt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e---- 260 (406)
T KOG2919|consen 185 DTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE---- 260 (406)
T ss_pred eccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc----
Confidence 99 55432 111 12235678999999955 4899999999999999999999999999999999999999
Q ss_pred CCCCCCccceeEEEEEEeC-CCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCC
Q 008939 398 PNSDGTAETVMYRFGSVGQ-DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS 476 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~~-Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~ 476 (548)
|| +.|.+|+. |-.|..||++.-. .
T Consensus 261 ---dG------n~lfsGaRk~dkIl~WDiR~~~----------------------------------------------~ 285 (406)
T KOG2919|consen 261 ---DG------NKLFSGARKDDKILCWDIRYSR----------------------------------------------D 285 (406)
T ss_pred ---Cc------CeecccccCCCeEEEEeehhcc----------------------------------------------c
Confidence 99 67777775 8899999998633 1
Q ss_pred ceEEeecCCC-CeeEEEEeCC----eEEEEECCCeEEEEeCCC
Q 008939 477 PLVAHRVHTE-PLSGLIFTQE----SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 477 ~~~~~~~h~~-~V~~l~fspd----~l~t~s~Dg~I~iW~~~~ 514 (548)
++..+..|.+ .-..|.|.-+ .|++|+.||.|++||+.+
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 2333444544 4445666543 489999999999999887
No 164
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=6.3e-18 Score=165.44 Aligned_cols=303 Identities=15% Similarity=0.178 Sum_probs=220.1
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
-..+.+|.+.+.|+..+|. |..|++|+.||.|+||.+.+ ++.+.... ..+.|.||+|+|....-
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~---G~wlasGsdDGtvriWEi~T-----gRcvr~~~--------~d~~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPS---GEWLASGSDDGTVRIWEIAT-----GRCVRTVQ--------FDSEIRSVAWNPLSDLC 456 (733)
T ss_pred eeeEeccCCeEEEEEecCC---cceeeecCCCCcEEEEEeec-----ceEEEEEe--------ecceeEEEEecCCCCce
Confidence 3455678999999999997 88999999999999999998 34333222 36689999999998764
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCC-----Ccccc---cccc-eeeeecCCC--CCCCCeeEeeecCCCeEEEEECCCCCEE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDS-----SFPVI---KDQT-QFSVAHPRY--SKSNPIARWHICQGSINSIAFSTDGTYL 314 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~-----~~~~~---~~~~-~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~sp~g~~l 314 (548)
+++...+..+.|-+..-+.+... .+... .... +........ ....-++..-.|...|..+.|+..|.||
T Consensus 457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL 536 (733)
T ss_pred eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceE
Confidence 55555555577766544311111 11111 0000 001110000 1122245556678999999999999999
Q ss_pred EEEECC---CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEE
Q 008939 315 ATVGRD---GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391 (548)
Q Consensus 315 ~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~ 391 (548)
++...+ ..|.|+++...+...-++--.+.|.++.|+|...+|++++. ..|+|||+..++.+..+.....+|..++.
T Consensus 537 atV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msi 615 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSI 615 (733)
T ss_pred EEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeee
Confidence 998654 56889999877766667666788999999999999999864 68999999998888888878889999999
Q ss_pred ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceee
Q 008939 392 DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRD 471 (548)
Q Consensus 392 ~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d 471 (548)
+| .| -.|+.++.|+.++.+|+....
T Consensus 616 hp-------~G------Dnli~gs~d~k~~WfDldlss------------------------------------------ 640 (733)
T KOG0650|consen 616 HP-------NG------DNLILGSYDKKMCWFDLDLSS------------------------------------------ 640 (733)
T ss_pred cC-------CC------CeEEEecCCCeeEEEEcccCc------------------------------------------
Confidence 99 88 578899999999999987542
Q ss_pred cCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe--CCCCC---------ccccCCCCc----EE--EecCC
Q 008939 472 VPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM--RPGVA---------ESQSSSSET----VL--STSSK 532 (548)
Q Consensus 472 ~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~--~~~~~---------~~~~~~~~~----v~--~~s~d 532 (548)
+|...++.|...|++|+|++.+ +++|+.||++.|+. +.+.. ..+.+|... |+ .|.|.
T Consensus 641 ----kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~ 716 (733)
T KOG0650|consen 641 ----KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR 716 (733)
T ss_pred ----chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCC
Confidence 3455667799999999999975 88999999999987 22211 122244433 55 57899
Q ss_pred CCceEeeecccc
Q 008939 533 DKPLLSSKVVTS 544 (548)
Q Consensus 533 ~~~l~s~~~~g~ 544 (548)
.-+|.+++..|-
T Consensus 717 qpWLfsAGAd~t 728 (733)
T KOG0650|consen 717 QPWLFSAGADGT 728 (733)
T ss_pred CceEEecCCCce
Confidence 999999877653
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=8.8e-18 Score=166.03 Aligned_cols=250 Identities=18% Similarity=0.298 Sum_probs=198.8
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee--cc
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ--QL 209 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~--~~ 209 (548)
.|..++|.|||..++.+.++.++|||.+.+. .+..+..|++.+.|++|+.+ |.++++|+.|..|.+|+-.- .+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~--llqtLKgHKDtVycVAys~d---GkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKD---GKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcc--cccccccccceEEEEEEccC---CceeccCCCceeEEEeccccccee
Confidence 6788999999999999999999999999977 89999999999999999999 88999999999999997542 12
Q ss_pred cccccceeeeeeeccCCc-----------------------ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 008939 210 QDVGKKLVGAHHYNKDGS-----------------------VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 266 (548)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~ 266 (548)
.-.....++...|++-.. -...+|.+++|..||. +|+.|..||+|.+-+...+...
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcce
Confidence 222333444555554211 1356889999999999 9999999999998865432111
Q ss_pred CCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC-----CEEEEEECCCeEEEEeCCCCeEEEeeeecC
Q 008939 267 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG-----TYLATVGRDGYLRVFDYSKEQLICGGKSYY 341 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-----~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 341 (548)
. +.+-.+.+.+|.+++|+|.. ..+++.....++.+|.+. |+.+..-+.-.
T Consensus 168 --~----------------------I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~ 222 (1081)
T KOG1538|consen 168 --K----------------------IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALN 222 (1081)
T ss_pred --E----------------------EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCC
Confidence 1 11112235789999999952 478888888999999886 66666545455
Q ss_pred CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 342 GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 342 ~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
-...|+.+.++|++++.|+.|+.+++|- +.|-.+.++-..+.||+.|+..| ++ +.++.|+.||+|-
T Consensus 223 FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P-------Ns------Q~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 223 FDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP-------NS------QYVVVGCQDGTIA 288 (1081)
T ss_pred CCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc-------CC------ceEEEEEccCeee
Confidence 5677999999999999999999999996 45767777776889999999999 88 7899999999999
Q ss_pred EEECC
Q 008939 422 LWDLE 426 (548)
Q Consensus 422 lwd~~ 426 (548)
.|++.
T Consensus 289 CyNl~ 293 (1081)
T KOG1538|consen 289 CYNLI 293 (1081)
T ss_pred hhhhH
Confidence 99874
No 166
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=1e-17 Score=159.32 Aligned_cols=258 Identities=14% Similarity=0.198 Sum_probs=192.7
Q ss_pred CCCCCceeEEeCCCCC-EEEEecCC--eEEEEEccCCC--CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 128 SSSTSMTNTNFDGKGT-YIIFNVGD--AIFISDLNSQD--KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~-~l~~~~~d--~v~vwd~~~~~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
-+.+.|++++|+|... .++..+++ .|=+||+.++. .+.+..+.-|...|.++.|+|.. ...+++.+.||.|++
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n--~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN--TSQIYSSSYDGTIRL 261 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC--hhheeeeccCceeee
Confidence 4578899999999877 45554444 99999996433 34566666677799999999984 568999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
-|++....+ .+.. .+ -....+..+.|+.+.. .++.+..=|.+.+||++.++.
T Consensus 262 ~D~~~~i~e---~v~s-----~~--~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s----------------- 313 (498)
T KOG4328|consen 262 QDFEGNISE---EVLS-----LD--TDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGS----------------- 313 (498)
T ss_pred eeecchhhH---HHhh-----cC--ccceeeeeccccCCCc-cEEEeecccceEEEEeecCCc-----------------
Confidence 999873221 1111 00 1345677888888888 566666667999999998542
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCe----EEEeeeecCCceEEEEEccCCCEEE
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQ----LICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
....|..|...|..++++| ...+||+++.|++++|||++.-. .+...-.|...|.+..|||++-.|+
T Consensus 314 --------~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~ 385 (498)
T KOG4328|consen 314 --------EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL 385 (498)
T ss_pred --------cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceE
Confidence 3445667778999999999 56789999999999999997532 2233345889999999999988899
Q ss_pred EEeCCCeEEEEECC----CceeEEecc---CCCCCeE--EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 358 TGGEDDLVQVWSME----DRKVVAWGE---GHNSWVS--GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 358 sgs~dg~I~vwd~~----~~~~~~~~~---~h~~~V~--~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+-+.|..|+|||.. .-.+...+. .+..+++ ...|+| |. .+|+++-.-..|-|+|-..+
T Consensus 386 TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P-------~~------~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 386 TTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP-------DY------NLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred eeccCCceEEeecccccccCCccceeeccCcccccccchhheeCC-------Cc------cEEEEeccCcceeEEcCCCC
Confidence 99999999999983 333343443 1223443 457888 76 68999999899999999988
Q ss_pred eEEeeeec
Q 008939 429 EIVVPLRR 436 (548)
Q Consensus 429 ~~~~~~~~ 436 (548)
+.+..+..
T Consensus 453 q~v~el~~ 460 (498)
T KOG4328|consen 453 QMVCELHD 460 (498)
T ss_pred EEeeeccC
Confidence 87776654
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.2e-17 Score=156.73 Aligned_cols=314 Identities=16% Similarity=0.204 Sum_probs=210.0
Q ss_pred CCCCceeEEeCCCCC-EEEEecCC-eEEEEEccCCCCC-------CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc
Q 008939 129 SSTSMTNTNFDGKGT-YIIFNVGD-AIFISDLNSQDKD-------PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD 199 (548)
Q Consensus 129 h~~~v~~~~~~~~g~-~l~~~~~d-~v~vwd~~~~~~~-------~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~ 199 (548)
...++..+.|.++.. .++++++| .|+||-++....+ -+..+..|...++++.|+|+ |..|++|+.+|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~---gelLASg~D~g~ 88 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD---GELLASGGDGGE 88 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC---cCeeeecCCCce
Confidence 467888999998877 89998888 9999998764421 23445568889999999999 889999999999
Q ss_pred EEEEEeeec-------ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc
Q 008939 200 VYSVSLRQQ-------LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 200 I~iwdl~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
|.+|..... ..+..++... ..+....|...|+.++|+|++. .+++++.|..+++||+..
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~---v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~---------- 154 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWV---VKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHA---------- 154 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceE---EEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEecc----------
Confidence 999987621 0000111000 1112224889999999999999 999999999999999987
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-----e--------
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-----S-------- 339 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-----~-------- 339 (548)
...+..+..|..-+..++|.|-.+++++-+.|...+++.+...+.++... .
T Consensus 155 ----------------G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~ 218 (434)
T KOG1009|consen 155 ----------------GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREG 218 (434)
T ss_pred ----------------ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCc
Confidence 34567778888999999999999999999999888888776544332211 0
Q ss_pred ------cC----CceEEEEEccCCCEEEEEeC----CC-----eEEEEECCC-ceeEEeccCCCCCeEEEEEecCCCCCC
Q 008939 340 ------YY----GALLCCAWSMDGKYILTGGE----DD-----LVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPN 399 (548)
Q Consensus 340 ------~~----~~v~~l~~spdg~~l~sgs~----dg-----~I~vwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~ 399 (548)
|. .-...++|+|||.+|++... .+ ..++++-.. .++...+.+...++..+.|+|..
T Consensus 219 ~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy---- 294 (434)
T KOG1009|consen 219 KSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVY---- 294 (434)
T ss_pred ceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeE----
Confidence 11 12456789999999887542 12 234454432 35667777777888888888731
Q ss_pred CCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceE
Q 008939 400 SDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV 479 (548)
Q Consensus 400 ~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~ 479 (548)
+.|---..... ++.+.- ..+..-.....+.+||.++..|+.
T Consensus 295 ---------~elrp~~~~~~--~~~lpy----------------------------rlvfaiAt~~svyvydtq~~~P~~ 335 (434)
T KOG1009|consen 295 ---------YELRPLSSEKF--LFVLPY----------------------------RLVFAIATKNSVYVYDTQTLEPLA 335 (434)
T ss_pred ---------EEecccccccc--cccccc----------------------------ceEEEEeecceEEEeccccccceE
Confidence 00000000000 111100 000011112334444444444544
Q ss_pred Eee-cCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcc
Q 008939 480 AHR-VHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAES 518 (548)
Q Consensus 480 ~~~-~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~ 518 (548)
... .|-..|++++|++|+ |+..+.||...+-.+...+.-
T Consensus 336 ~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 336 VVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred EEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 443 478899999999994 899999999988887766543
No 168
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.9e-17 Score=154.22 Aligned_cols=312 Identities=13% Similarity=0.174 Sum_probs=218.7
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCC----CCCCeEEEec-CCCCceEEEecCCCCCCceEEEEEcCC
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQ----DKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIGLNSG 198 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~----~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg 198 (548)
-..+|.+.|..+.|+.++++|+++++| .++||+++.. ..+||..... |..+|.|++|+.. ...|++|..++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~---N~~~~SG~~~~ 127 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE---NRFLYSGERWG 127 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC---CeeEecCCCcc
Confidence 345789999999999999999999998 9999998641 1256766544 4489999999988 78899999999
Q ss_pred cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccce
Q 008939 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
+|.+.|+++. +.+.- ++.. -..+.|+.+..+|..+ .|++.+.++.|.+||.+........+.+.
T Consensus 128 ~VI~HDiEt~-----qsi~V---~~~~--~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A----- 191 (609)
T KOG4227|consen 128 TVIKHDIETK-----QSIYV---ANEN--NNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPA----- 191 (609)
T ss_pred eeEeeecccc-----eeeee---eccc--CcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeec-----
Confidence 9999999872 11111 1111 1466999999999976 99999999999999998633222211111
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeE-EE------eeeecCCceEEEEEc
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQL-IC------GGKSYYGALLCCAWS 350 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~-~~------~~~~~~~~v~~l~~s 350 (548)
........+.|+| ...+|++.+..+-+.+||.+..+. +. .++........+.|+
T Consensus 192 ------------------N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~ 253 (609)
T KOG4227|consen 192 ------------------NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS 253 (609)
T ss_pred ------------------CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC
Confidence 1125577889999 567888999999999999986542 11 122212223567899
Q ss_pred cCCCEEEEEeCCCeEEEEECCCcee-EEeccCCC-------CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEE
Q 008939 351 MDGKYILTGGEDDLVQVWSMEDRKV-VAWGEGHN-------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLL 422 (548)
Q Consensus 351 pdg~~l~sgs~dg~I~vwd~~~~~~-~~~~~~h~-------~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~l 422 (548)
|+|..|++--....-.+||+...++ +..+. |+ ..+.+++|.- . +.+++|+.+-.|.+
T Consensus 254 ~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~--------D------~~v~tGSD~~~i~~ 318 (609)
T KOG4227|consen 254 PSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFID--------D------YTVATGSDHWGIHI 318 (609)
T ss_pred CCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeec--------c------eeeeccCcccceEE
Confidence 9999988877777778899987554 33332 43 3566778863 3 67999999999999
Q ss_pred EECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEE
Q 008939 423 WDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLT 500 (548)
Q Consensus 423 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t 500 (548)
|.+.....-.-+. .+|.... -.--++-....++.+++|..-++.|.|+|. .|++
T Consensus 319 WklP~~~ds~G~~-----------------------~IG~~~~-~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~S 374 (609)
T KOG4227|consen 319 WKLPRANDSYGFT-----------------------QIGHDEE-EMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVS 374 (609)
T ss_pred EecCCCccccCcc-----------------------ccCcchh-hCchhheecceeEEEecccccccceeecCCcceEec
Confidence 9987543211110 0111000 000011122457788999999999999996 4888
Q ss_pred EECCCeEEEEeC
Q 008939 501 VCREGHIKIWMR 512 (548)
Q Consensus 501 ~s~Dg~I~iW~~ 512 (548)
.+-+..++||.-
T Consensus 375 SGVE~~~KlWS~ 386 (609)
T KOG4227|consen 375 SGVENSFKLWSD 386 (609)
T ss_pred cchhhheecccc
Confidence 899999999983
No 169
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=6e-17 Score=165.75 Aligned_cols=283 Identities=16% Similarity=0.154 Sum_probs=198.5
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNS 231 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (548)
.++||++... ..|-..+. .+..++|+.|+|.. ..+|+.|..+|+|.+||++.....+-..+ ......|..
T Consensus 223 ~~~vW~~~~p-~~Pe~~~~-~~s~v~~~~f~p~~--p~ll~gG~y~GqV~lWD~~~~~~~~~s~l------s~~~~sh~~ 292 (555)
T KOG1587|consen 223 VLLVWSLKNP-NTPELVLE-SPSEVTCLKFCPFD--PNLLAGGCYNGQVVLWDLRKGSDTPPSGL------SALEVSHSE 292 (555)
T ss_pred eEEEEecCCC-CCceEEEe-cCCceeEEEeccCC--cceEEeeccCceEEEEEccCCCCCCCccc------ccccccCCc
Confidence 5899999986 23444444 67899999999984 56899999999999999987422110111 111123899
Q ss_pred ceEEEEEecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-
Q 008939 232 RCTSVTWVPGGD-GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST- 309 (548)
Q Consensus 232 ~v~~l~~~p~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp- 309 (548)
+|+.+.|..+-. .-|++++.||.|..|+++.-..+......-... ......+ ....+++++|.+
T Consensus 293 ~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~------------~~~~~~~--~~~~~t~~~F~~~ 358 (555)
T KOG1587|consen 293 PVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK------------HKGQQSS--KAVGATSLKFEPT 358 (555)
T ss_pred CeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc------------ccccccc--cccceeeEeeccC
Confidence 999999987544 248999999999999887632211111100000 0000001 125788999998
Q ss_pred CCCEEEEEECCCeEEEEeC---CCCe-----EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC-CceeEEecc
Q 008939 310 DGTYLATVGRDGYLRVFDY---SKEQ-----LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME-DRKVVAWGE 380 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~---~~~~-----~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~-~~~~~~~~~ 380 (548)
+...+++|+.+|.|..-+- +... ....+..|.+.|.++.++|-+..++..+.|..|+||+.. ...++..+.
T Consensus 359 ~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~ 438 (555)
T KOG1587|consen 359 DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD 438 (555)
T ss_pred CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh
Confidence 6678999999999887333 2222 133456688999999999988765555559999999998 677888888
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeee
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 460 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 460 (548)
.+...|++++|+|. - ...|+++..||.|.+||+......
T Consensus 439 ~~~~~v~~vaWSpt-------r-----pavF~~~d~~G~l~iWDLl~~~~~----------------------------- 477 (555)
T KOG1587|consen 439 SSPDYVTDVAWSPT-------R-----PAVFATVDGDGNLDIWDLLQDDEE----------------------------- 477 (555)
T ss_pred hccceeeeeEEcCc-------C-----ceEEEEEcCCCceehhhhhccccC-----------------------------
Confidence 88899999999982 1 158999999999999999764422
Q ss_pred cccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCC
Q 008939 461 GTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 461 g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~ 515 (548)
|+.....+....+.+.|++++ |+.|...|.+.+|+++..
T Consensus 478 ----------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 478 ----------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ----------------CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 222233345667778888865 888889999999998643
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=8e-17 Score=144.88 Aligned_cols=260 Identities=19% Similarity=0.224 Sum_probs=180.8
Q ss_pred CCCceeEEeCC---CCCEEEEecC-----CeEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 130 STSMTNTNFDG---KGTYIIFNVG-----DAIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 130 ~~~v~~~~~~~---~g~~l~~~~~-----d~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
.-.++.+.|+. ...+|+.++- +.|.|-.+.....+.+..-.| ++-.++.+.|.|+.+...-=+.++.+..+
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~L 123 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFL 123 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeE
Confidence 34556677762 3445665542 367777766443334443333 66788999999996522112234455689
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
++|.+...... -.+......++ ..-+..++++..|+.-..+++.+++-|.++.|||+..+..
T Consensus 124 RlWri~~ee~~--~~~~~~L~~~k-ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~--------------- 185 (364)
T KOG0290|consen 124 RLWRIGDEESR--VELQSVLNNNK-NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS--------------- 185 (364)
T ss_pred EEEeccCcCCc--eehhhhhccCc-ccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc---------------
Confidence 99998742111 11111111222 2236789999999998888999999999999999987311
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCeE---EEeeeecCCceEEEEEccCC-CE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQL---ICGGKSYYGALLCCAWSMDG-KY 355 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~~~~---~~~~~~~~~~v~~l~~spdg-~~ 355 (548)
...-..+-.|...|..++|...+ +.+|+++.||.+|+||++.-+- +..-.....++..++|++.. ++
T Consensus 186 --------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpny 257 (364)
T KOG0290|consen 186 --------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNY 257 (364)
T ss_pred --------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchH
Confidence 01123455688999999999854 5899999999999999986543 32222224578899999854 56
Q ss_pred EEEEeCC-CeEEEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 356 ILTGGED-DLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 356 l~sgs~d-g~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+|+-..| ..|.|.|++.. .++.++++|.+.|++|+|.|. .. ..|+++|.|.++.+||+..
T Consensus 258 mATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPh------S~------~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 258 MATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPH------SS------SHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred HhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCC------CC------ceeeecCCcceEEEEeccc
Confidence 7765444 67999999874 688999999999999999992 22 6899999999999999975
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=1.9e-15 Score=154.56 Aligned_cols=322 Identities=23% Similarity=0.363 Sum_probs=230.3
Q ss_pred CceeEEe-CCCCC-EEEEecC-C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc-CCcEEEEEee
Q 008939 132 SMTNTNF-DGKGT-YIIFNVG-D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN-SGDVYSVSLR 206 (548)
Q Consensus 132 ~v~~~~~-~~~g~-~l~~~~~-d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~-dg~I~iwdl~ 206 (548)
.+..+.+ .+++. ++..... + .+++|++... ...+..+..+...+.+++|+|+ +..++.+.. ++.+++|++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 186 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP-GKLIRTLEGHSESVTSLAFSPD---GKLLASGSSLDGTIKLWDLR 186 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCC-CeEEEEEecCcccEEEEEECCC---CCEEEecCCCCCceEEEEcC
Confidence 4555555 77777 4444343 5 9999999861 1367778889999999999999 657888875 9999999987
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
. .+.+.. .. .|...|.+++|+|++..++++++.|+.|++||....
T Consensus 187 ~-----~~~~~~-~~------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~----------------------- 231 (466)
T COG2319 187 T-----GKPLST-LA------GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG----------------------- 231 (466)
T ss_pred C-----CceEEe-ec------cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-----------------------
Confidence 5 111111 11 278899999999988734444589999999976631
Q ss_pred CCCCCee-EeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE-EEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 287 SKSNPIA-RWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL-ICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 287 ~~~~~~~-~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
..+. .+..|...+ ...|++++.++++++.|+.+++|++..... +..+..|...+.++.|.|++..+++++.|+.
T Consensus 232 ---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~ 307 (466)
T COG2319 232 ---KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT 307 (466)
T ss_pred ---cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc
Confidence 1122 345555554 338999998999999999999999986654 4444678889999999998888888999989
Q ss_pred EEEEECCCceeEEecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCC
Q 008939 365 VQVWSMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGS 442 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~ 442 (548)
+.+||+.......... .|...|..+.|.+ ++. ..+..+..|+.+.+|++.................
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (466)
T COG2319 308 VRLWDLETGKLLSSLTLKGHEGPVSSLSFSP-------DGS-----LLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS 375 (466)
T ss_pred EEEEEcCCCceEEEeeecccCCceEEEEECC-------CCC-----EEEEeecCCCcEEeeecCCCceeEEecCCceEEE
Confidence 9999999887666655 7888899999943 320 3344446889999999998873322222111222
Q ss_pred ceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 443 PTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 443 ~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
+.+.. . ......+..+..+.+|+............+...+....+.++. +++++.++.+++|++..
T Consensus 376 ~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 376 VSFSP-D-----GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEECC-C-----CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 23322 1 1112245667788899988877776665544678888888864 77789999999999887
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=1.9e-17 Score=154.65 Aligned_cols=166 Identities=17% Similarity=0.295 Sum_probs=141.8
Q ss_pred ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
+|..+|.+++|+|.+.+.||+|++|.+|.||++..++.... ...|+..+.+|+..|.-++|
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~-------------------ltepvv~L~gH~rrVg~V~w 139 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD-------------------LTEPVVELYGHQRRVGLVQW 139 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccC-------------------cccceEEEeecceeEEEEee
Confidence 59999999999999988999999999999999976443211 23689999999999999999
Q ss_pred CC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCe
Q 008939 308 ST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 386 (548)
Q Consensus 308 sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V 386 (548)
+| -.+.|++++.|..|.+||+.+++.+.++. |.+.|.++.|+.||.+|++.+.|..|+|||.++++.+....+|.+.-
T Consensus 140 HPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k 218 (472)
T KOG0303|consen 140 HPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK 218 (472)
T ss_pred cccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC
Confidence 99 45789999999999999999999888887 99999999999999999999999999999999999999888887632
Q ss_pred -EEEEEecCCCCCCCCCCccceeEEEEEEe----CCCeEEEEECCC
Q 008939 387 -SGVAFDSYWSQPNSDGTAETVMYRFGSVG----QDTRLLLWDLEM 427 (548)
Q Consensus 387 -~~v~~~p~~~~~~~dg~~~~~~~~l~s~~----~Dg~i~lwd~~~ 427 (548)
..+.|-. +| . |++.+ .+.++-|||...
T Consensus 219 ~~Raifl~-------~g------~-i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 219 PARAIFLA-------SG------K-IFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred cceeEEec-------cC------c-eeeeccccccccceeccCccc
Confidence 3455665 77 4 55554 467899998654
No 173
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.78 E-value=2.9e-17 Score=149.72 Aligned_cols=246 Identities=17% Similarity=0.168 Sum_probs=187.3
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCC-CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQD-KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~-~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
.++|++.+|++|...++.+... .|.||.....+ .++.+.+.-|...+++++|+|. .+.|++++.|..-++|....
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~---snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK---SNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC---CCceeEccCCCCccccccCC
Confidence 5788999999999999998887 99999988766 7889999999999999999999 77899999999999998743
Q ss_pred -cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 208 -QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 208 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
..+. +..-..+ ++...+++.|+|.++ .|++|+....|.||-++.+..- .....++
T Consensus 87 ~~~Wk---ptlvLlR-------iNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdW-WVsKhik------------ 142 (361)
T KOG1523|consen 87 GGTWK---PTLVLLR-------INRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDW-WVSKHIK------------ 142 (361)
T ss_pred CCeec---cceeEEE-------eccceeeEeecCcCc-eEEeccCccEEEEEEEecccce-ehhhhhC------------
Confidence 2222 2222222 688899999999998 9999999999999998863321 1111111
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC-----C-------------CeEEEeeeecCCceEEEE
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS-----K-------------EQLICGGKSYYGALLCCA 348 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~-----~-------------~~~~~~~~~~~~~v~~l~ 348 (548)
+.+...|.+++|+|++-+|++|+.|+.+|||..- + |+++..+....+.+..+.
T Consensus 143 ---------kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~ 213 (361)
T KOG1523|consen 143 ---------KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL 213 (361)
T ss_pred ---------CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE
Confidence 1123789999999999999999999999999652 1 223334434567899999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCce-eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 349 WSMDGKYILTGGEDDLVQVWSMEDRK-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 349 ~spdg~~l~sgs~dg~I~vwd~~~~~-~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
|+|+|..|+-.+.|..+.+-|-.... .+..+..-.-+..++.|-. + ..++.++.|..=.++..
T Consensus 214 fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is-------e-------~~vv~ag~~c~P~lf~~ 277 (361)
T KOG1523|consen 214 FSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS-------E-------NSVVAAGYDCGPVLFVT 277 (361)
T ss_pred eCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec-------C-------CceeecCCCCCceEEEe
Confidence 99999999999999999999987654 3444433336777777754 3 35777777754444443
No 174
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.78 E-value=7.3e-18 Score=149.62 Aligned_cols=264 Identities=16% Similarity=0.102 Sum_probs=186.0
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe-cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH-FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~-~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
.+|.+.++++.|..+++++.-.....|.+|++.+.. ++..++ ++...++.+.--|+ ..|.+-+.|+.+.+|++
T Consensus 11 Rp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r--~~~~~r~~g~~~it~lq~~p~----d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTER--DLPLIRLFGRLFITNLQSIPN----DSLDTQGRDPLLILWTI 84 (323)
T ss_pred ccccchheehhhccchhhhcccccceEEEEEeecCc--cchhhhhhccceeeceeecCC----cchhhcCCCceEEEEEc
Confidence 378899999999988874433334499999999854 666666 56666676666664 35788888899999987
Q ss_pred eec-------------------ccccccceeeeeeeccC----------------------CcccCcceEEEEEecCCC-
Q 008939 206 RQQ-------------------LQDVGKKLVGAHHYNKD----------------------GSVNNSRCTSVTWVPGGD- 243 (548)
Q Consensus 206 ~~~-------------------~~~~~~~~~~~~~~~~~----------------------~~~~~~~v~~l~~~p~~~- 243 (548)
.-. +....++......+... .....+.+.|..|..+..
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 641 00001111000001000 001345677777544332
Q ss_pred -cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCe
Q 008939 244 -GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGY 322 (548)
Q Consensus 244 -~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~ 322 (548)
-+|++|.++|.|.+||+..+.... .++.. ...+.....|..+|.++.|.+.-..=++++.+..
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~-~~~~~---------------~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKII-QLPQS---------------SKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceee-ccccc---------------cccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 267788999999999998742221 11110 1223344567799999999886556678888889
Q ss_pred EEEEeCCCC--eE--EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCC
Q 008939 323 LRVFDYSKE--QL--ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQP 398 (548)
Q Consensus 323 v~vwd~~~~--~~--~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 398 (548)
+..|++... .+ ...+.-....|..+..-||++.+|+++.|+.||||+.++.+++..++-|.+.|.+++|+|
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp----- 303 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP----- 303 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-----
Confidence 999998643 22 122223345688899999999999999999999999999999999999999999999999
Q ss_pred CCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 399 NSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 399 ~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
|. .++++++.|++|.+|++
T Consensus 304 --d~------~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 304 --DC------ELMAAASKDARISLWKL 322 (323)
T ss_pred --CC------chhhhccCCceEEeeec
Confidence 86 59999999999999986
No 175
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=7.8e-17 Score=151.30 Aligned_cols=285 Identities=15% Similarity=0.208 Sum_probs=200.2
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
...++..+.|.++..+.|++|+.|..|++|.+......... .+-..+..+..|+..|+++.|+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-----------------~~V~y~s~Ls~H~~aVN~vRf~ 74 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-----------------MKVEYLSSLSRHTRAVNVVRFS 74 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-----------------eeEEEeecccCCcceeEEEEEc
Confidence 36789999999998889999999999999998763221100 0123355677899999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCC--------C--------CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008939 309 TDGTYLATVGRDGYLRVFDYS--------K--------EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~--------~--------~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~ 372 (548)
|+|.+||+|+.+|.|.+|-.. + ......+.+|...|..++|+||+.++++++-|..+++||+..
T Consensus 75 p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 75 PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc
Confidence 999999999999999999765 2 223456778999999999999999999999999999999999
Q ss_pred ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC---------CC----
Q 008939 373 RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG---------PL---- 439 (548)
Q Consensus 373 ~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~---------~~---- 439 (548)
++.++.+..|...|..++|+| -+ +++++-+.|...+.+.+...+.+..+... ..
T Consensus 155 G~l~~~~~dh~~yvqgvawDp-------l~------qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~ 221 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDP-------LN------QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKST 221 (434)
T ss_pred ceeEeeccccccccceeecch-------hh------hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCccee
Confidence 999999999999999999999 65 68888888887777777655544333210 00
Q ss_pred -----------CCCceecCCCCc-cccCCeeeeccc--CCCCceeecC-CCCceEEeecCCCCeeEEEEeCC--------
Q 008939 440 -----------GGSPTFSTGSQS-AHWDNVCPVGTL--QPAPSMRDVP-KLSPLVAHRVHTEPLSGLIFTQE-------- 496 (548)
Q Consensus 440 -----------~~~~~~~~~~~~-~~~d~~~~~g~~--~~~~~~~d~~-~~~~~~~~~~h~~~V~~l~fspd-------- 496 (548)
-..+.|++++.. ....+.+..+.. ....++++-. ...|...+..-..++..+.|+|=
T Consensus 222 rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~ 301 (434)
T KOG1009|consen 222 RLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLS 301 (434)
T ss_pred eeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccc
Confidence 012345555531 112222222211 1223333322 33567777777777888888761
Q ss_pred -----------eEEEEECCCeEEEEeCCCCCcc---ccCCCCcEE--EecCCCCceEeeeccc
Q 008939 497 -----------SVLTVCREGHIKIWMRPGVAES---QSSSSETVL--STSSKDKPLLSSKVVT 543 (548)
Q Consensus 497 -----------~l~t~s~Dg~I~iW~~~~~~~~---~~~~~~~v~--~~s~d~~~l~s~~~~g 543 (548)
.++.......|.|+|.+..... ..-|-..+. +|++||..|+.+...|
T Consensus 302 ~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 302 SEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred ccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence 1344455568899997654311 113334444 8899998887776654
No 176
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6.3e-17 Score=147.05 Aligned_cols=225 Identities=14% Similarity=0.179 Sum_probs=166.6
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC
Q 008939 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG 381 (548)
Q Consensus 302 v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 381 (548)
-.|+.|++.|.+||+|..||.|.|||+.+...-..+.+|-.+|.+++||+||+.|++++.|..|.+||+..+.+++.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7799999999999999999999999999988877889999999999999999999999999999999999999999988
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCC-ccccCCeeee
Q 008939 382 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ-SAHWDNVCPV 460 (548)
Q Consensus 382 h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~ 460 (548)
..++|+...|+|. +- +..+..-.+..-.+-++..+.- ..+.. .....+..+.... ..-....+.+
T Consensus 105 f~spv~~~q~hp~------k~------n~~va~~~~~sp~vi~~s~~~h-~~Lp~-d~d~dln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 105 FDSPVWGAQWHPR------KR------NKCVATIMEESPVVIDFSDPKH-SVLPK-DDDGDLNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred ccCccceeeeccc------cC------CeEEEEEecCCcEEEEecCCce-eeccC-CCccccccccccccccCCCCEEEE
Confidence 7899999999992 22 2333333344444445543211 11111 1122222222111 1112356789
Q ss_pred cccCCCCceeecCCCCceEEeecCC-CCeeEEEEeCC--eEEEEECCCeEEEEeCCCCC------ccccCC---------
Q 008939 461 GTLQPAPSMRDVPKLSPLVAHRVHT-EPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA------ESQSSS--------- 522 (548)
Q Consensus 461 g~~~~~~~~~d~~~~~~~~~~~~h~-~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~------~~~~~~--------- 522 (548)
|+..+.+.+++..+.+.+..++.-. ..|..+.|+.. .|+.-+.|..||.+++..-. +....|
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 9999999999999999999888766 78888998875 59999999999999975321 111111
Q ss_pred CCcEEEecCCCCceEeeec
Q 008939 523 SETVLSTSSKDKPLLSSKV 541 (548)
Q Consensus 523 ~~~v~~~s~d~~~l~s~~~ 541 (548)
...-..||.||++++.++.
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~ 269 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSA 269 (405)
T ss_pred hhhheeecCCccEEEeccc
Confidence 1122278999999998864
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=1.1e-16 Score=144.09 Aligned_cols=255 Identities=13% Similarity=0.200 Sum_probs=176.2
Q ss_pred CceEEEecCCCCCCceEEEEEcC----CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC----cEE
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNS----GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD----GAF 246 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~d----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~----~~l 246 (548)
.+..+.|+.......+|++|+-. +.|.|..+... .+ .++.... .-|.-+++.+-|.|+.. .+|
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~---s~-e~~~~a~-----fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDED---SG-ELVEDAN-----FDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccC---CC-ceeccCC-----CCCCCCccceEecCCccccCcchh
Confidence 44555565432235678888743 55777766531 11 1211111 13788999999999874 255
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEE
Q 008939 247 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRV 325 (548)
Q Consensus 247 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~v 325 (548)
++++ ..+++|.+..+......-..+... .-..+..+++++.|+. +.++|.+.+-|-++.|
T Consensus 117 ATs~--D~LRlWri~~ee~~~~~~~~L~~~-----------------kns~~~aPlTSFDWne~dp~~igtSSiDTTCTi 177 (364)
T KOG0290|consen 117 ATSS--DFLRLWRIGDEESRVELQSVLNNN-----------------KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTI 177 (364)
T ss_pred hccc--CeEEEEeccCcCCceehhhhhccC-----------------cccccCCcccccccccCCcceeEeecccCeEEE
Confidence 5544 479999987532111000000000 0011237899999997 7889999999999999
Q ss_pred EeCCCCe---EEEeeeecCCceEEEEEccCC-CEEEEEeCCCeEEEEECCCcee---EEeccCCCCCeEEEEEecCCCCC
Q 008939 326 FDYSKEQ---LICGGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKV---VAWGEGHNSWVSGVAFDSYWSQP 398 (548)
Q Consensus 326 wd~~~~~---~~~~~~~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~~---~~~~~~h~~~V~~v~~~p~~~~~ 398 (548)
||++++. +...+.+|...|..++|...+ +.+|+.+.||.||+||++..+. +.+-.....+...++|++.
T Consensus 178 Wdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq---- 253 (364)
T KOG0290|consen 178 WDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ---- 253 (364)
T ss_pred EEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC----
Confidence 9999873 355678899999999999866 4789999999999999987643 2222222457778888762
Q ss_pred CCCCCccceeEEEEEEeCC-CeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCc
Q 008939 399 NSDGTAETVMYRFGSVGQD-TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSP 477 (548)
Q Consensus 399 ~~dg~~~~~~~~l~s~~~D-g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~ 477 (548)
|- ++|++-..| ..|.|-|++... .+
T Consensus 254 --Dp------nymATf~~dS~~V~iLDiR~P~----------------------------------------------tp 279 (364)
T KOG0290|consen 254 --DP------NYMATFAMDSNKVVILDIRVPC----------------------------------------------TP 279 (364)
T ss_pred --Cc------hHHhhhhcCCceEEEEEecCCC----------------------------------------------cc
Confidence 33 677777766 468888887533 35
Q ss_pred eEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEeCCCC
Q 008939 478 LVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 478 ~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~~ 515 (548)
+..+++|...|++|+|.|. .|.|+++|.++.|||++.-
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 6778899999999999996 4999999999999998654
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=9.4e-17 Score=144.29 Aligned_cols=261 Identities=18% Similarity=0.214 Sum_probs=183.6
Q ss_pred CcccccccCCCCCCceeEEeCCCCCEEEE-ecC---C-----eEEEEEccCCC-------CCCeEEEe-cCCCCceEEEe
Q 008939 119 SRIGSLGASSSSTSMTNTNFDGKGTYIIF-NVG---D-----AIFISDLNSQD-------KDPIKSIH-FSNSNPVCHAF 181 (548)
Q Consensus 119 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~~-~~~---d-----~v~vwd~~~~~-------~~~i~~~~-~~~~~~~~~~~ 181 (548)
+++.+-.+-.|.+.|-.++-+|....|++ ... + ...||.+...- .+.+..+. -+-..+.|+.|
T Consensus 52 s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew 131 (370)
T KOG1007|consen 52 SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW 131 (370)
T ss_pred chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE
Confidence 44555677788889999998887665554 222 1 46799987532 12233332 12348899999
Q ss_pred cCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 008939 182 DQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKS 261 (548)
Q Consensus 182 ~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~ 261 (548)
.|+ +..|+ +..+..|.+|++... .++.......... .+....++-+|+|..+...+....|+++..||++
T Consensus 132 ~Pn---s~kla-sm~dn~i~l~~l~es-----s~~vaev~ss~s~-e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~R 201 (370)
T KOG1007|consen 132 EPN---SDKLA-SMDDNNIVLWSLDES-----SKIVAEVLSSESA-EMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLR 201 (370)
T ss_pred cCC---CCeeE-EeccCceEEEEcccC-----cchheeecccccc-cccceecccccCCCCccceEEEeCCCcEEEEEcc
Confidence 998 44455 444899999999862 2322222211121 2577889999999333234445567999999999
Q ss_pred CCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCC-eEEEeeee
Q 008939 262 KDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKE-QLICGGKS 339 (548)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~-~~~~~~~~ 339 (548)
+..+ ....-+.|...|..+.|+|+.+ +|++++.||.|+|||.+.- ..+..+.+
T Consensus 202 T~~~-------------------------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~ 256 (370)
T KOG1007|consen 202 TMKK-------------------------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG 256 (370)
T ss_pred chhh-------------------------hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC
Confidence 7422 1222345667899999999765 6889999999999999854 56888999
Q ss_pred cCCceEEEEEccCC-CEEEEEeCCCeEEEEECCC-----------------------------ceeEEeccCCCCCeEEE
Q 008939 340 YYGALLCCAWSMDG-KYILTGGEDDLVQVWSMED-----------------------------RKVVAWGEGHNSWVSGV 389 (548)
Q Consensus 340 ~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~-----------------------------~~~~~~~~~h~~~V~~v 389 (548)
|..+|.++.|+|.. ++|++|+.|..|.+|.... ...+.++..|++.|+++
T Consensus 257 HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~ 336 (370)
T KOG1007|consen 257 HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL 336 (370)
T ss_pred CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEE
Confidence 99999999999954 5788999999999996421 01334666799999999
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 390 AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 390 ~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+|+.. |- -.|++-+.||.+.|=.+.
T Consensus 337 aWSsa------dP------WiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 337 AWSSA------DP------WIFASLSYDGRVIISSVP 361 (370)
T ss_pred eeccC------CC------eeEEEeccCceEEeecCC
Confidence 99751 33 688999999999886654
No 179
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=1.4e-16 Score=145.65 Aligned_cols=247 Identities=15% Similarity=0.187 Sum_probs=179.2
Q ss_pred CCCCCCceeEEeCC-----CCCEEEEecCCeEEEEEccCCCCCCeEEEec-----CCCCceEEEecCCCCC-CceEEEEE
Q 008939 127 SSSSTSMTNTNFDG-----KGTYIIFNVGDAIFISDLNSQDKDPIKSIHF-----SNSNPVCHAFDQDAKD-GHDLLIGL 195 (548)
Q Consensus 127 ~~h~~~v~~~~~~~-----~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~-----~~~~~~~~~~~p~~~~-~~~l~~g~ 195 (548)
-.|..++..++|++ .-..+++.+++.+.+|...... .++.++- ++.....++|.-+..+ .-+|++|+
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--GIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--ceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 35677888888872 2345666677799999987633 2333221 4456677888887664 56788899
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD 275 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 275 (548)
.-|.|+|.|+.+. + +.+....|...|+.|+++|+..+++++++.|..|++|+++++
T Consensus 113 ~~GvIrVid~~~~------~------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~------------ 168 (385)
T KOG1034|consen 113 YLGVIRVIDVVSG------Q------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD------------ 168 (385)
T ss_pred ceeEEEEEecchh------h------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC------------
Confidence 9999999998862 1 222233589999999999999889999999999999999872
Q ss_pred cceeeeecCCCCCCCCeeE---eeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE------E------------
Q 008939 276 QTQFSVAHPRYSKSNPIAR---WHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL------I------------ 334 (548)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~------~------------ 334 (548)
..+.. ..+|.+.|.++.|+++|.+|++++.|..|++|++...+. .
T Consensus 169 --------------~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pf 234 (385)
T KOG1034|consen 169 --------------VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPF 234 (385)
T ss_pred --------------eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcC
Confidence 22333 356889999999999999999999999999999973210 0
Q ss_pred ----Eee------eecCCc------------------------------------------------------eE--EEE
Q 008939 335 ----CGG------KSYYGA------------------------------------------------------LL--CCA 348 (548)
Q Consensus 335 ----~~~------~~~~~~------------------------------------------------------v~--~l~ 348 (548)
..+ .-|..+ |. ..+
T Consensus 235 pt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~ 314 (385)
T KOG1034|consen 235 PTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFA 314 (385)
T ss_pred CccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEe
Confidence 000 001111 11 123
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCceeE--Eecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 008939 349 WSMDGKYILTGGEDDLVQVWSMEDRKVV--AWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424 (548)
Q Consensus 349 ~spdg~~l~sgs~dg~I~vwd~~~~~~~--~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd 424 (548)
|.|-++.||.|...|.|.+||++..++. .++. .-...|.+.+|+. || ..|+..+.|+.|.-||
T Consensus 315 ~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-------dg------s~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 315 FDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-------DG------SILVLVCDDGTVWRWD 381 (385)
T ss_pred ecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-------cC------cEEEEEeCCCcEEEEE
Confidence 4445667888999999999999876552 1222 1346889999998 99 7999999999999999
Q ss_pred CC
Q 008939 425 LE 426 (548)
Q Consensus 425 ~~ 426 (548)
..
T Consensus 382 rv 383 (385)
T KOG1034|consen 382 RV 383 (385)
T ss_pred ee
Confidence 64
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=5e-17 Score=144.35 Aligned_cols=272 Identities=18% Similarity=0.235 Sum_probs=188.6
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+|...++-+...++|+.|..+ .+|+.|...|.|.+|++.+. +.... .+ ..+...|+.+.-.|++
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~----~rL~sg~~~G~V~~w~lqt~-----r~~~~-~r-----~~g~~~it~lq~~p~d- 68 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQAN----ERLMSGLSVGIVKMWVLQTE-----RDLPL-IR-----LFGRLFITNLQSIPND- 68 (323)
T ss_pred CCeeEeccccchheehhhccc----hhhhcccccceEEEEEeecC-----ccchh-hh-----hhccceeeceeecCCc-
Confidence 466677777788999999876 35999999999999999872 21111 10 0267889999999986
Q ss_pred cEEEEEeCCCcEEEEEcCCCCC-----------CCCCccccccc---ceeeeecCCCC---------CCCCeeEe----e
Q 008939 244 GAFVVGHADGNLYVYEKSKDGA-----------GDSSFPVIKDQ---TQFSVAHPRYS---------KSNPIARW----H 296 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~-----------~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~----~ 296 (548)
.|.+-+.|+.+.+|++.-..- ....+...+.. .+....+.... +...++.. .
T Consensus 69 -~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~ 147 (323)
T KOG0322|consen 69 -SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSER 147 (323)
T ss_pred -chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhc
Confidence 488999999999999875110 01111111111 11111111111 11111111 1
Q ss_pred ecCCCeEEEEECC-CCC--EEEEEECCCeEEEEeCCCCe----------EEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 297 ICQGSINSIAFST-DGT--YLATVGRDGYLRVFDYSKEQ----------LICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 297 ~h~~~v~~~~~sp-~g~--~l~s~~~dg~v~vwd~~~~~----------~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
...+.++|..+.- ++. +|+.|.++|.+.+||+.++. .+.....|..+|.++.|.+.-..=++|+.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 1347788887654 443 46778899999999999873 3334456889999999988666678888999
Q ss_pred eEEEEECCCc--ee--EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC
Q 008939 364 LVQVWSMEDR--KV--VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL 439 (548)
Q Consensus 364 ~I~vwd~~~~--~~--~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~ 439 (548)
.+..|+++.. .+ ..++.-.+-.|..+...| |+ +.++++|.|+.|++|..++...+
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-------D~------KIlATAGWD~RiRVyswrtl~pL-------- 286 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-------DG------KILATAGWDHRIRVYSWRTLNPL-------- 286 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEcc-------CC------cEEeecccCCcEEEEEeccCCch--------
Confidence 9999998653 21 122222345688889999 99 89999999999999998876544
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeC
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMR 512 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~ 512 (548)
..++-|.+.|++++|+|+. ++.++.|++|.+|++
T Consensus 287 ---------------------------------------AVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 287 ---------------------------------------AVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ---------------------------------------hhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 4455699999999999984 899999999999996
No 181
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=4.8e-16 Score=161.33 Aligned_cols=302 Identities=12% Similarity=0.147 Sum_probs=202.3
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEe---cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIH---FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~---~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
..+...+.|+|-...++++.++ .|+|||.+.+. .+..+. +....|+.+.+-.+ .+..++++|+.||.|+||+-
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~--~l~~F~n~~~~~t~Vs~l~liNe-~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGR--LLNGFDNGAFPDTRVSDLELINE-QDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCc--eeccccCCCCCCCccceeeeecc-cchhheeeeccCceEEEecc
Confidence 3356678899999999988866 99999999855 554443 34456777776543 23678999999999999975
Q ss_pred eecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
-...+..-+.+..............+.=.-+.|..... .|++++.-..|+|||..++... ..++.-
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~-~diP~~------------ 1206 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVV-ADIPYG------------ 1206 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeE-eecccC------------
Confidence 43222222222221111111111112224567888777 6666666789999999873221 111110
Q ss_pred CCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCC---eEEEeeeecCCc--eEEEEEccCCCE-EEE
Q 008939 286 YSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE---QLICGGKSYYGA--LLCCAWSMDGKY-ILT 358 (548)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~---~~~~~~~~~~~~--v~~l~~spdg~~-l~s 358 (548)
-...|+++.-+. .|+.|+.|..||.|++||.+.. ..+...+.|... |..+.+.+.|-- |++
T Consensus 1207 ------------s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvS 1274 (1387)
T KOG1517|consen 1207 ------------SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVS 1274 (1387)
T ss_pred ------------CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceee
Confidence 124566665443 5799999999999999999754 356778888887 999999987754 999
Q ss_pred EeCCCeEEEEECCCceeEEec--cCC---CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 359 GGEDDLVQVWSMEDRKVVAWG--EGH---NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 359 gs~dg~I~vwd~~~~~~~~~~--~~h---~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
|+.||.|++||++.......+ ..| .+.++++..|+ +. ..+++|+. +.|+||++... .+..
T Consensus 1275 gs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-------ha------piiAsGs~-q~ikIy~~~G~-~l~~ 1339 (1387)
T KOG1517|consen 1275 GSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE-------HA------PIIASGSA-QLIKIYSLSGE-QLNI 1339 (1387)
T ss_pred eccCCeEEEEecccCcccccceeeeccccCccceeeeecc-------CC------CeeeecCc-ceEEEEecChh-hhcc
Confidence 999999999999974222222 223 23589999998 66 57888887 99999998643 3333
Q ss_pred eecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 434 LRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
++.. ..| +......+.+++|+|.. |+.|+.|..|.||.
T Consensus 1340 ~k~n-----~~F-----------------------------------~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1340 IKYN-----PGF-----------------------------------MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred cccC-----ccc-----------------------------------ccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 3220 000 00123457999999974 88899999999998
Q ss_pred CCCC
Q 008939 512 RPGV 515 (548)
Q Consensus 512 ~~~~ 515 (548)
.+..
T Consensus 1380 ~~k~ 1383 (1387)
T KOG1517|consen 1380 CEKP 1383 (1387)
T ss_pred cCCc
Confidence 7654
No 182
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1e-14 Score=135.76 Aligned_cols=239 Identities=16% Similarity=0.150 Sum_probs=176.0
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc--EEEEEeeec
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD--VYSVSLRQQ 208 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~--I~iwdl~~~ 208 (548)
..+....|+.+...|..++.+..++|..+... ......-....|.-+-|+.. ++++.+.+.. +++++++.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~--k~~~~~~~~~~IvEmLFSSS-----LvaiV~~~qpr~Lkv~~~Kk- 77 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGYKIFSCSPFE--KCFSKDTEGVSIVEMLFSSS-----LVAIVSIKQPRKLKVVHFKK- 77 (391)
T ss_pred cceeeeeeccceeEEEccCCCceeEEecCchH--HhhcccCCCeEEEEeecccc-----eeEEEecCCCceEEEEEccc-
Confidence 34556779999999999999999999988633 22222223345566667644 5655555433 77777664
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
+..++... -...|.+|.++.+ .|+++-.+ .|+|||++...- ..
T Consensus 78 -----~~~ICe~~-------fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~Mkl-Lh-------------------- 120 (391)
T KOG2110|consen 78 -----KTTICEIF-------FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKL-LH-------------------- 120 (391)
T ss_pred -----CceEEEEe-------cCCceEEEEEccc---eEEEEEcc-cEEEEeccccee-eh--------------------
Confidence 33444443 3678889998765 56666654 499999987321 11
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEE--CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe-E
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVG--RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL-V 365 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~-I 365 (548)
.+..+..+...+.++.+++++.+|+.-+ ..|.|.+||..+-+.+..+..|.+.+-|++|+++|.+||++++.|+ |
T Consensus 121 --TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVI 198 (391)
T KOG2110|consen 121 --TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVI 198 (391)
T ss_pred --hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEE
Confidence 1222222335576777777778888743 4689999999999999999999999999999999999999999986 6
Q ss_pred EEEECCCceeEEeccCC--CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 366 QVWSMEDRKVVAWGEGH--NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 366 ~vwd~~~~~~~~~~~~h--~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
||+++.+++.+.+|+.- -..|.+++|+| |+ .+|++.+..++|.+|.+....
T Consensus 199 RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-------ds------~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-------DS------QFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEcCCccEeeeeeCCceeeEEEEEEECC-------CC------CeEEEecCCCeEEEEEecccc
Confidence 99999999999998743 34678999999 98 788899999999999998755
No 183
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=7.1e-17 Score=148.43 Aligned_cols=196 Identities=12% Similarity=0.157 Sum_probs=143.7
Q ss_pred CEEEEecC-CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeee
Q 008939 143 TYIIFNVG-DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHH 221 (548)
Q Consensus 143 ~~l~~~~~-d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~ 221 (548)
..++++.. ..|++||..++. .+..+.+++..+..++|.... ..+.+++++.||.|++||++.+...... .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~--~l~~fk~~~~~~N~vrf~~~d-s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~------~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ--LLEEFKGPPATTNGVRFISCD-SPHGVISCSSDGTVRLWDIRSQAESARI------S 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchh--hhheecCCCCcccceEEecCC-CCCeeEEeccCCeEEEEEeecchhhhhe------e
Confidence 34555544 499999999955 888999999999999998753 2678999999999999999984211111 1
Q ss_pred eccCCcccCcceEEEEEecCCCcEEEEEe----CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee
Q 008939 222 YNKDGSVNNSRCTSVTWVPGGDGAFVVGH----ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI 297 (548)
Q Consensus 222 ~~~~~~~~~~~v~~l~~~p~~~~~l~s~~----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (548)
+... ...+..|++....+. ++++|. .|-.|.+||++...+.. -.....
T Consensus 112 ~~~~---~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l------------------------~~~~eS 163 (376)
T KOG1188|consen 112 WTQQ---SGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLL------------------------RQLNES 163 (376)
T ss_pred ccCC---CCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchh------------------------hhhhhh
Confidence 1111 135667777766666 777775 46789999999743211 122356
Q ss_pred cCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeE---EEeeeecCCceEEEEEccCC-CEEEEEeCCCeEEEEECCC
Q 008939 298 CQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQL---ICGGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 298 h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~---~~~~~~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~ 372 (548)
|...|+++.|+| +.++|++|+.||.|.+||+..... +...-.|...|.++.|..++ +.|.+-+......+|+++.
T Consensus 164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence 789999999999 678999999999999999975421 22223467779999999887 4588888899999999876
Q ss_pred cee
Q 008939 373 RKV 375 (548)
Q Consensus 373 ~~~ 375 (548)
+.+
T Consensus 244 ~~~ 246 (376)
T KOG1188|consen 244 GSE 246 (376)
T ss_pred CCh
Confidence 543
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=2e-16 Score=144.35 Aligned_cols=214 Identities=20% Similarity=0.320 Sum_probs=170.7
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecc-cccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQL-QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
+..+......++|++|+++ ...++++-.+.+|.||...... +.....+ .-|...|++|+|.|..+
T Consensus 3 ~~~~~~~~~pitchAwn~d---rt~iAv~~~~~evhiy~~~~~~~w~~~htl----------s~Hd~~vtgvdWap~sn- 68 (361)
T KOG1523|consen 3 VVVFHRLLEPITCHAWNSD---RTQIAVSPNNHEVHIYSMLGADLWEPAHTL----------SEHDKIVTGVDWAPKSN- 68 (361)
T ss_pred eEEeeeccCceeeeeecCC---CceEEeccCCceEEEEEecCCCCceeceeh----------hhhCcceeEEeecCCCC-
Confidence 3445556778999999999 7789999999999999987632 2222221 12889999999999998
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
.|++++.|.+-+||....++. -.|...+..++...+++.|+|.++.||+|+....|.
T Consensus 69 rIvtcs~drnayVw~~~~~~~-----------------------WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~is 125 (361)
T KOG1523|consen 69 RIVTCSHDRNAYVWTQPSGGT-----------------------WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLIS 125 (361)
T ss_pred ceeEccCCCCccccccCCCCe-----------------------eccceeEEEeccceeeEeecCcCceEEeccCccEEE
Confidence 899999999999999865332 345556666779999999999999999999999999
Q ss_pred EEeCCCCeE----EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEEC-----CC-------------ceeEEeccCC
Q 008939 325 VFDYSKEQL----ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM-----ED-------------RKVVAWGEGH 382 (548)
Q Consensus 325 vwd~~~~~~----~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~-----~~-------------~~~~~~~~~h 382 (548)
||-++..+- .+.-+.+...|++++|+|++-+|++|+.|+..+|+.. ++ |+++.++...
T Consensus 126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ 205 (361)
T KOG1523|consen 126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS 205 (361)
T ss_pred EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC
Confidence 998875432 1233456788999999999999999999999999864 21 2344445456
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
.++|..+.|+| +| ..|+-.+.|..+.+=|.....
T Consensus 206 ggwvh~v~fs~-------sG------~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 206 GGWVHGVLFSP-------SG------NRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCceeeeEeCC-------CC------CEeeEecCCCceEEeecCCCc
Confidence 78999999999 88 799999999999999987664
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=4.7e-17 Score=158.73 Aligned_cols=230 Identities=17% Similarity=0.204 Sum_probs=179.3
Q ss_pred EEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEE
Q 008939 168 SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 247 (548)
++..|.+.+..++|.|. ...|++++.||.|.+|++........+.+.... ....|.++|.|++..++++ .++
T Consensus 289 tl~s~~d~ir~l~~~~s---ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~----tfraH~gPVl~v~v~~n~~-~~y 360 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPS---EPVLITASEDGTLKLWNLQKAKKSAEKDVEPIL----TFRAHEGPVLCVVVPSNGE-HCY 360 (577)
T ss_pred eeecchhhhhhhhcCCC---CCeEEEeccccchhhhhhcccCCccccceeeeE----EEecccCceEEEEecCCce-EEE
Confidence 44556778888899888 446999999999999999432112222222211 1235999999999999999 999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd 327 (548)
+|+-||+|+.|++.........+. .......+.+|.+.|..+++|+....|++++.||+++.|+
T Consensus 361 sgg~Dg~I~~w~~p~n~dp~ds~d----------------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLPPNQDPDDSYD----------------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE 424 (577)
T ss_pred eeccCceeeeeccCCCCCcccccC----------------cchhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence 999999999998864332222221 1344567889999999999999888999999999999998
Q ss_pred CCCCeEEEeeee----------------------------------------------------cCCceEEEEEccCCCE
Q 008939 328 YSKEQLICGGKS----------------------------------------------------YYGALLCCAWSMDGKY 355 (548)
Q Consensus 328 ~~~~~~~~~~~~----------------------------------------------------~~~~v~~l~~spdg~~ 355 (548)
...... +++.. -...+..+.++|...+
T Consensus 425 ~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~ 503 (577)
T KOG0642|consen 425 PTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADI 503 (577)
T ss_pred cCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCe
Confidence 864433 11100 1123567788899999
Q ss_pred EEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 356 l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
.+++.+|+.|+++|..++.+++....|...|+++++.| +| -+|++++.|+.+++|.+....++....
T Consensus 504 ~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-------ng------~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 504 TFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-------NG------PYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred eEecccCCceecccccccccchheeeccceecceeecC-------CC------ceEEeecCCceeehhhccchheeeccc
Confidence 99999999999999999999999999999999999999 88 799999999999999998888776543
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=2.5e-18 Score=173.93 Aligned_cols=236 Identities=15% Similarity=0.192 Sum_probs=178.9
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 369 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd 369 (548)
+.+..+.+|..+|+|+.|...|.++++++.|..++||.++++.++...++|.+.|+.++.+.+.-.+++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 44667788999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred CCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee--------------ee
Q 008939 370 MEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP--------------LR 435 (548)
Q Consensus 370 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~--------------~~ 435 (548)
+.++.++..+++|++.|++++|+| +.+.+.||++++||.+-.-.... +.
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP-----------------~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~ 323 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSP-----------------RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSIL 323 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCc-----------------cccCCCCCceEeccccccccccCCCCCCcccccceeeee
Confidence 999999999999999999999999 44778899999999882111111 10
Q ss_pred cCCCCCCceecC---CCCcc---------------------ccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEE
Q 008939 436 RGPLGGSPTFST---GSQSA---------------------HWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGL 491 (548)
Q Consensus 436 ~~~~~~~~~~~~---~~~~~---------------------~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l 491 (548)
.... ...|.. ++... ..+..+.+...+-.++.|++-.+..+..+.+|.+.+..|
T Consensus 324 ~~~~--~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvL 401 (1113)
T KOG0644|consen 324 FENN--GDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVL 401 (1113)
T ss_pred cccc--ccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeee
Confidence 0000 001111 11000 011112223334457778888999999999999999999
Q ss_pred EEeC-C--eEEEEECCCeEEEEeCCCCCccc---cCCCCcEE-EecCCCCceEeeecccc
Q 008939 492 IFTQ-E--SVLTVCREGHIKIWMRPGVAESQ---SSSSETVL-STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 492 ~fsp-d--~l~t~s~Dg~I~iW~~~~~~~~~---~~~~~~v~-~~s~d~~~l~s~~~~g~ 544 (548)
.++| + ...+++.||.+.|||+-.+.... .+|...+- +||+||..++.....|-
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgq 461 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQ 461 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCc
Confidence 9999 3 26799999999999976544221 23444444 88888877666654443
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2e-15 Score=154.92 Aligned_cols=308 Identities=17% Similarity=0.204 Sum_probs=217.2
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEE-cc-CCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISD-LN-SQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd-~~-~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
.|.-.+++.+++|++++++++..+ .|.||. +. .......+.++||.+.+.+++|+++ |.+|++|+..|.+.+|.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~---G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD---GAYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC---CceEeecccceEEEEEe
Confidence 455568899999999999998877 999997 33 3445678899999999999999999 88999999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+++.. ++.+.. -.++|..+.++||+. +.+....|..|.+....... .......+.....
T Consensus 280 ~~T~~----kqfLPR---------Lgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~-~k~tIsgi~~~~~------ 338 (792)
T KOG1963|consen 280 LETGK----KQFLPR---------LGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLE-IKSTISGIKPPTP------ 338 (792)
T ss_pred ecCCC----cccccc---------cCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchh-hhhhccCccCCCc------
Confidence 98732 222221 378999999999999 88888899999999875421 1111111111000
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee-----------cCCceEEEEEccCC
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS-----------YYGALLCCAWSMDG 353 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~-----------~~~~v~~l~~spdg 353 (548)
.. -...++-.+.++++|--+.++..+..|.|.+||+.+.+.+..+.. +.-.++.++.+-.|
T Consensus 339 ~~--------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g 410 (792)
T KOG1963|consen 339 ST--------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG 410 (792)
T ss_pred cc--------cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccc
Confidence 00 001125567788999667788888999999999988766554431 12357778888889
Q ss_pred CEEEEEe--------CC--CeEEEEECCCce----eEEe-ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 354 KYILTGG--------ED--DLVQVWSMEDRK----VVAW-GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 354 ~~l~sgs--------~d--g~I~vwd~~~~~----~~~~-~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
.+++|.- .| ..+++|-..... +... ...|+..+...+|.+ -- ...++++++.||
T Consensus 411 s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~-------~~----rs~~~vta~~dg 479 (792)
T KOG1963|consen 411 SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLN-------PT----RSVRCVTASVDG 479 (792)
T ss_pred eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEec-------Cc----ccceeEEeccCC
Confidence 9998853 23 357888665432 2222 246988888888765 11 112799999999
Q ss_pred eEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe-
Q 008939 419 RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES- 497 (548)
Q Consensus 419 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~- 497 (548)
.+++|-+...+.+..... .| .+...-.-|..+++.++|+.|+
T Consensus 480 ~~KiW~~~~~~n~~k~~s--------------------------------~W-----~c~~i~sy~k~~i~a~~fs~dGs 522 (792)
T KOG1963|consen 480 DFKIWVFTDDSNIYKKSS--------------------------------NW-----TCKAIGSYHKTPITALCFSQDGS 522 (792)
T ss_pred eEEEEEEecccccCcCcc--------------------------------ce-----EEeeeeccccCcccchhhcCCCc
Confidence 999999866543322111 01 0111111278899999999997
Q ss_pred EEEEECCCeEEEEeCCCC
Q 008939 498 VLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 498 l~t~s~Dg~I~iW~~~~~ 515 (548)
+++++.|++|.+||..+.
T Consensus 523 lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 523 LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred EEEEecCCEEEEecCCCh
Confidence 999999999999998773
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=9e-15 Score=145.76 Aligned_cols=227 Identities=15% Similarity=0.183 Sum_probs=147.6
Q ss_pred CCeEEEEEccC-CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcEEEEEeeecccccccc-eeeeeeeccCC
Q 008939 150 GDAIFISDLNS-QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSVSLRQQLQDVGKK-LVGAHHYNKDG 226 (548)
Q Consensus 150 ~d~v~vwd~~~-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iwdl~~~~~~~~~~-~~~~~~~~~~~ 226 (548)
++.|++||+.+ +....+..+. ....+..++++|+ ++.|+++. .++.|.+|+++.. ++. ......
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd---~~~lyv~~~~~~~i~~~~~~~~----g~l~~~~~~~----- 77 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPD---KRHLYVGVRPEFRVLSYRIADD----GALTFAAESP----- 77 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCC---CCEEEEEECCCCcEEEEEECCC----CceEEeeeec-----
Confidence 34999999964 2223455554 3467889999998 77777764 5788999998631 111 111111
Q ss_pred cccCcceEEEEEecCCCcEEEEE-eCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 227 SVNNSRCTSVTWVPGGDGAFVVG-HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 227 ~~~~~~v~~l~~~p~~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
.......+.|+|+++ +|+++ ..++.|.+|+++.++..... +.... +...+.++
T Consensus 78 --~~~~p~~i~~~~~g~-~l~v~~~~~~~v~v~~~~~~g~~~~~----------------------~~~~~-~~~~~~~~ 131 (330)
T PRK11028 78 --LPGSPTHISTDHQGR-FLFSASYNANCVSVSPLDKDGIPVAP----------------------IQIIE-GLEGCHSA 131 (330)
T ss_pred --CCCCceEEEECCCCC-EEEEEEcCCCeEEEEEECCCCCCCCc----------------------eeecc-CCCcccEe
Confidence 123467899999999 55554 45899999999754322111 11111 11346778
Q ss_pred EECCCCCEEEEEE-CCCeEEEEeCCCCeEEEe-----ee-ecCCceEEEEEccCCCEEEEEeC-CCeEEEEECCC--c--
Q 008939 306 AFSTDGTYLATVG-RDGYLRVFDYSKEQLICG-----GK-SYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMED--R-- 373 (548)
Q Consensus 306 ~~sp~g~~l~s~~-~dg~v~vwd~~~~~~~~~-----~~-~~~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~~--~-- 373 (548)
+|+|++++++++. .++.|.+||+.+...+.. .. ........++|+|+|+++++..+ ++.|.+||++. +
T Consensus 132 ~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 132 NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 9999999886655 569999999976332211 11 11234678999999999988876 89999999973 2
Q ss_pred eeEEeccC------CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEECCCC
Q 008939 374 KVVAWGEG------HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDLEMD 428 (548)
Q Consensus 374 ~~~~~~~~------h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~~~ 428 (548)
+.+..+.. +..+...+.|+| || ++|+++. .++.|.+|++...
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~p-------dg------~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITP-------DG------RHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECC-------CC------CEEEEecCCCCeEEEEEEeCC
Confidence 23333322 122445688999 88 5666654 5789999998654
No 189
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.5e-15 Score=133.44 Aligned_cols=242 Identities=16% Similarity=0.167 Sum_probs=177.8
Q ss_pred ceeEEeCCCCCEEEEecCC-eEEEEEccCC--------CCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 133 MTNTNFDGKGTYIIFNVGD-AIFISDLNSQ--------DKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~--------~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
|..-+++|.+++++.+..+ .|.|..+++- .+.++-..+.|...+..++|..+ .|++| .||.|+-|
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-----~Lls~-gdG~V~gw 86 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-----FLLSG-GDGLVYGW 86 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-----heeec-cCceEEEe
Confidence 4456788999999988776 8888887652 13556666779999999999844 44444 55999999
Q ss_pred Eeeecccc-cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 204 SLRQQLQD-VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 204 dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
..+..... ..+++.........+......|++|...|..+ -++.++.|+.++-||++++
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G------------------- 146 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDG------------------- 146 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCC-------------------
Confidence 87753321 12222222211122233567899999999887 5666669999999999972
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecC----------CceEEEEEccC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY----------GALLCCAWSMD 352 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~----------~~v~~l~~spd 352 (548)
...+.+++|++-|.++.--.....+++|+.||++|+||+++++.+..+..+. .+|-+++-+
T Consensus 147 -------~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~-- 217 (325)
T KOG0649|consen 147 -------RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN-- 217 (325)
T ss_pred -------EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--
Confidence 4467889999999999986555679999999999999999999887765432 245566554
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
..+|++|+ ...+.+|+++..++...+. -...|..+.|.. ..++++++..+|.-|.+.
T Consensus 218 edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~---------------d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 218 EDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDFVD---------------DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CceEEecC-CCceeEEeccCCCceEEEe-cccceeEeeeec---------------ceEEEeccccceeeeeec
Confidence 45777664 5689999999998888776 567788899964 368899988999999875
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.7e-17 Score=159.45 Aligned_cols=251 Identities=12% Similarity=0.143 Sum_probs=180.3
Q ss_pred ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
.|.+.|+.+.|.|-.. .|++++.||.|.+|++.+... .......|+..|++|.++|.|+++
T Consensus 292 s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~------------------s~~~~~epi~tfraH~gPVl~v~v 352 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKK------------------SAEKDVEPILTFRAHEGPVLCVVV 352 (577)
T ss_pred cchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCC------------------ccccceeeeEEEecccCceEEEEe
Confidence 3788999999999988 999999999999999954100 012235789999999999999999
Q ss_pred CCCCCEEEEEECCCeEEEEeCCCC----------eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 308 STDGTYLATVGRDGYLRVFDYSKE----------QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 308 sp~g~~l~s~~~dg~v~vwd~~~~----------~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
.++++++++|+.||+|+.|++-.. .+...+.+|.+.++.+++|+....|++++.||++++|+.....+ .
T Consensus 353 ~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~ 431 (577)
T KOG0642|consen 353 PSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-C 431 (577)
T ss_pred cCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-c
Confidence 999999999999999999965311 23456789999999999999999999999999999999876655 3
Q ss_pred eccCCC--CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC--------CCCCceecC
Q 008939 378 WGEGHN--SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP--------LGGSPTFST 447 (548)
Q Consensus 378 ~~~~h~--~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~--------~~~~~~~~~ 447 (548)
++.... +.-..+.|-.. +- ..+++...-+.--+.|+.....+..+.... .++.++..+
T Consensus 432 ~f~~~~e~g~Plsvd~~ss------~~------a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~ 499 (577)
T KOG0642|consen 432 TFGEPKEHGYPLSVDRTSS------RP------AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP 499 (577)
T ss_pred ccCCccccCCcceEeeccc------hh------HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC
Confidence 333221 22334555320 00 122332233333444455444444443321 111111111
Q ss_pred CCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 448 GSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 448 ~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
.. ........+..++++|..+..++.....|...++++++.|++ |++++.|+.+++|.+....
T Consensus 500 ~~------~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 500 TA------DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred CC------CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 11 222445557789999999999999999999999999999985 9999999999999986544
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=1.2e-14 Score=144.89 Aligned_cols=250 Identities=13% Similarity=0.143 Sum_probs=159.9
Q ss_pred CCceeEEeCCCCCEEEEecC--CeEEEEEccC-CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc-CCcEEEEEee
Q 008939 131 TSMTNTNFDGKGTYIIFNVG--DAIFISDLNS-QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN-SGDVYSVSLR 206 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~--d~v~vwd~~~-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~-dg~I~iwdl~ 206 (548)
+.+..++++|++++|.++.. +.|.+|+++. +....+.... ....+..++|+|+ ++.|+++.. ++.|.+|+++
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~---g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQ---GRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCC---CCEEEEEEcCCCeEEEEEEC
Confidence 34557899999998877543 3899999973 2212233333 3346789999998 777777664 7889999986
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
.. ........... +...+.+++++|+++.++++...++.|.+||++..+.........
T Consensus 111 ~~--g~~~~~~~~~~-------~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~------------- 168 (330)
T PRK11028 111 KD--GIPVAPIQIIE-------GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE------------- 168 (330)
T ss_pred CC--CCCCCceeecc-------CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc-------------
Confidence 41 10011111110 234467889999998455666677999999997633221100000
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCC--Ce--EEEeeeec------CCceEEEEEccCCCE
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGR-DGYLRVFDYSK--EQ--LICGGKSY------YGALLCCAWSMDGKY 355 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~~~--~~--~~~~~~~~------~~~v~~l~~spdg~~ 355 (548)
+. .. .......++|+|++++|+++.. ++.|.+|++.. ++ .+..+..+ ......+.++|++++
T Consensus 169 -----~~-~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 169 -----VT-TV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred -----ee-cC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 00 00 0134567999999999988876 89999999973 33 23333221 122346889999999
Q ss_pred EEEEeC-CCeEEEEECCCceeEEeccCC---CCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEECC
Q 008939 356 ILTGGE-DDLVQVWSMEDRKVVAWGEGH---NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDLE 426 (548)
Q Consensus 356 l~sgs~-dg~I~vwd~~~~~~~~~~~~h---~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~ 426 (548)
|+++.. ++.|.+|+++.......+.++ ......+.|+| || ++|+++. .++.|.+|++.
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~-------dg------~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDH-------SG------KYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECC-------CC------CEEEEEEccCCcEEEEEEc
Confidence 998854 789999999654321122212 13456789999 98 5565555 48999999875
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=3.7e-15 Score=157.26 Aligned_cols=344 Identities=13% Similarity=0.122 Sum_probs=204.8
Q ss_pred CCCCCceeEEeCCCC-CEEEEecCC-eEEEEEccCCCC-----CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 128 SSSTSMTNTNFDGKG-TYIIFNVGD-AIFISDLNSQDK-----DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g-~~l~~~~~d-~v~vwd~~~~~~-----~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
-|...+..++.++.. .+++++++| +|+||++..-.. +...+.......+.++.+.+. ++.+++++.||.|
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~---~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN---GDQFAVSTKDGSV 1122 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC---CCeEEEEcCCCeE
Confidence 456667777776655 899999988 999999875322 222233334678899999888 8899999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc-EEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG-AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
.+.+++.. ..++........++......-|..-+|...... .++.+..-+.|..||+++..... ..
T Consensus 1123 ~~~~id~~---~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w-~l--------- 1189 (1431)
T KOG1240|consen 1123 RVLRIDHY---NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW-RL--------- 1189 (1431)
T ss_pred EEEEcccc---ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH-hh---------
Confidence 99998862 122222222222222212223344455444333 77888888999999998732211 00
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEccCC---CE
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWSMDG---KY 355 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~spdg---~~ 355 (548)
......|.|++++.+|.+++++.|+..|.+.+||++-+.++.... .+..++..+..+|-. ..
T Consensus 1190 --------------k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1190 --------------KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred --------------hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCce
Confidence 011123899999999999999999999999999999888876643 234567777666633 34
Q ss_pred EEE-Ee-CCCeEEEEECCCceeEEeccCCCCCeEEEEE-ecCC---CCC--------CCCCCccceeEEEEEEeCCCeEE
Q 008939 356 ILT-GG-EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF-DSYW---SQP--------NSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 356 l~s-gs-~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~-~p~~---~~~--------~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
.++ ++ ..+.|.+|++.++.+...+..-+ .+..+.+ .|.- +++ ..+++ ..+.+++.|..|+
T Consensus 1256 ~vs~~~~~~nevs~wn~~~g~~~~vl~~s~-~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-----~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNMETGLRQTVLWASD-GAPILSYALPSNDARKPDSLAGISCGVCEKN-----GFLLTGGSDMKIR 1329 (1431)
T ss_pred EEEecccCCCceeeeecccCcceEEEEcCC-CCcchhhhcccccCCCCCcccceeeecccCC-----ceeeecCCcccee
Confidence 444 44 57899999999987665554221 1111111 1100 000 00111 3789999999999
Q ss_pred EEECCCCeEEeeeecCCCCC---------CceecCCCCccccCCee----eecccCCCCceeecCCCCceEEeecCCCCe
Q 008939 422 LWDLEMDEIVVPLRRGPLGG---------SPTFSTGSQSAHWDNVC----PVGTLQPAPSMRDVPKLSPLVAHRVHTEPL 488 (548)
Q Consensus 422 lwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~d~~~----~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V 488 (548)
.||....+... +....+.. .....+++. .-+..+ .++.. ...+--......+...-..|.++|
T Consensus 1330 ~wD~~~p~~ss-~~~~~~s~~~~~~~~s~~~~~i~~~~--~i~e~i~~~~tv~~t-~~~~~~~~~~~~~~~ps~~H~d~I 1405 (1431)
T KOG1240|consen 1330 KWDPTRPEISS-YAVPGPSTSYSTNSESYDLSTIPGSQ--FIDEFIIYQQTVGLT-EALRENQKLRPGPSDPSTYHHDPI 1405 (1431)
T ss_pred eccCCCccccc-ccccCccccccccchhccccccCCCc--cchhhhhhhhhcCch-hhcccccccccCCCCCcccccchh
Confidence 99998766542 11111100 011111110 001000 00000 000001111111222223688999
Q ss_pred eEEEEeCC---eEEEEECCCeEEEEe
Q 008939 489 SGLIFTQE---SVLTVCREGHIKIWM 511 (548)
Q Consensus 489 ~~l~fspd---~l~t~s~Dg~I~iW~ 511 (548)
++|++... .|++++.||.|+||.
T Consensus 1406 tdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1406 TDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhhhccCccEEEEecCCCeeeecC
Confidence 99998763 499999999999994
No 193
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=4.6e-17 Score=155.12 Aligned_cols=263 Identities=19% Similarity=0.246 Sum_probs=203.4
Q ss_pred ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEE
Q 008939 170 HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVG 249 (548)
Q Consensus 170 ~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 249 (548)
.+..-.+..+.|..+ |..|+.|+..|.|..+|..+ +.+...+. ....|.++.|..+.+ +||++
T Consensus 126 ~l~eFGPY~~~ytrn---GrhlllgGrKGHlAa~Dw~t------~~L~~Ei~-------v~Etv~Dv~~LHneq-~~AVA 188 (545)
T KOG1272|consen 126 SLPEFGPYHLDYTRN---GRHLLLGGRKGHLAAFDWVT------KKLHFEIN-------VMETVRDVTFLHNEQ-FFAVA 188 (545)
T ss_pred cccccCCeeeeecCC---ccEEEecCCccceeeeeccc------ceeeeeee-------hhhhhhhhhhhcchH-HHHhh
Confidence 334456788888888 88999999999999999887 44444444 467899999998887 66666
Q ss_pred eCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q 008939 250 HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS 329 (548)
Q Consensus 250 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~ 329 (548)
- ...++|||-.- ..+++++.| ..|..+.|-|..=+|++++..|.++--|+.
T Consensus 189 Q-K~y~yvYD~~G---------------------------tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS 239 (545)
T KOG1272|consen 189 Q-KKYVYVYDNNG---------------------------TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVS 239 (545)
T ss_pred h-hceEEEecCCC---------------------------cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeec
Confidence 4 57899998542 224444444 678899999988889999999999999999
Q ss_pred CCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeE
Q 008939 330 KEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409 (548)
Q Consensus 330 ~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~ 409 (548)
+|+++..+..-.+.+..++-+|-+-.+-+|..+|+|.+|+....+++..+..|.++|.+|++++ +| +
T Consensus 240 ~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-------~G------~ 306 (545)
T KOG1272|consen 240 TGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-------GG------R 306 (545)
T ss_pred hhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-------CC------c
Confidence 9999999988888999999999998999999999999999999999999999999999999999 99 8
Q ss_pred EEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCC-ccccCCeeeecccCCCCceeecCCCCceEEeecCCCCe
Q 008939 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ-SAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPL 488 (548)
Q Consensus 410 ~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V 488 (548)
+++|.|.|..++|||+++-..+.++....+...+.++..+. ...+...+.+|....... -....|.+.+.. ..+|
T Consensus 307 YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s---~~~~~pYm~H~~-~~~V 382 (545)
T KOG1272|consen 307 YMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGS---GHGETPYMNHRC-GGPV 382 (545)
T ss_pred EEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehhhhcCC---CCCCcchhhhcc-Cccc
Confidence 99999999999999999998888887766777777777664 223333332222110000 011123332222 3489
Q ss_pred eEEEEeC
Q 008939 489 SGLIFTQ 495 (548)
Q Consensus 489 ~~l~fsp 495 (548)
..+.|.|
T Consensus 383 ~~l~FcP 389 (545)
T KOG1272|consen 383 EDLRFCP 389 (545)
T ss_pred ccceecc
Confidence 9999999
No 194
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.71 E-value=8.9e-16 Score=143.61 Aligned_cols=231 Identities=13% Similarity=0.195 Sum_probs=168.7
Q ss_pred eEEEEEccCCC--CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCccc
Q 008939 152 AIFISDLNSQD--KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVN 229 (548)
Q Consensus 152 ~v~vwd~~~~~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 229 (548)
...|.-+.... .+..-.+..|...+..++|+|. +.+.|++|+.|..|.||++... .....+. .......+|
T Consensus 58 af~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~Pf--nD~vIASgSeD~~v~vW~IPe~--~l~~~lt---epvv~L~gH 130 (472)
T KOG0303|consen 58 AFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPF--NDCVIASGSEDTKVMVWQIPEN--GLTRDLT---EPVVELYGH 130 (472)
T ss_pred ceeecccccccccCCCCCCccCccccccccccCcc--CCceeecCCCCceEEEEECCCc--ccccCcc---cceEEEeec
Confidence 55555544311 1234455678899999999998 4678999999999999998763 1111111 111222359
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
..+|--++|+|...++|++++.|..|.+|++.++. .+..+. |..-|.++.|+.
T Consensus 131 ~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--------------------------ali~l~-hpd~i~S~sfn~ 183 (472)
T KOG0303|consen 131 QRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--------------------------ALITLD-HPDMVYSMSFNR 183 (472)
T ss_pred ceeEEEEeecccchhhHhhccCCceEEEEeccCCc--------------------------eeeecC-CCCeEEEEEecc
Confidence 99999999999999999999999999999999842 233344 779999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCC-ceEEEEEccCCCEEEEEe---CCCeEEEEECCCce---eEEeccCC
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG-ALLCCAWSMDGKYILTGG---EDDLVQVWSMEDRK---VVAWGEGH 382 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~sgs---~dg~I~vwd~~~~~---~~~~~~~h 382 (548)
||.+|++.+.|..|||||.++++++....+|.+ .-..+.|-.+|.++-+|- .+..+-+||..+-+ ....+. .
T Consensus 184 dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-t 262 (472)
T KOG0303|consen 184 DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-T 262 (472)
T ss_pred CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-c
Confidence 999999999999999999999999988888876 344566888998555553 47889999876643 233343 3
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
.+.|.---|+| |.. -..+.|-.|+.|+.|.+....
T Consensus 263 SnGvl~PFyD~-------dt~-----ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 263 SNGVLLPFYDP-------DTS-----IVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred CCceEEeeecC-------CCC-----EEEEEecCCcceEEEEecCCC
Confidence 44555555666 541 234455569999999998766
No 195
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.71 E-value=4.7e-15 Score=135.76 Aligned_cols=210 Identities=18% Similarity=0.199 Sum_probs=126.5
Q ss_pred eEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccc
Q 008939 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK 214 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~ 214 (548)
.+.|+|+|+++++...-.+.|.|.++-+ .+ .+-..-+.+..+.|..+. -..|.+...++.|.+|++.+..
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq--~~-qlf~cldki~yieW~ads--~~ilC~~yk~~~vqvwsl~Qpe----- 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQ--LH-QLFLCLDKIVYIEWKADS--CHILCVAYKDPKVQVWSLVQPE----- 82 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhh--HH-HHHHHHHHhhheeeeccc--eeeeeeeeccceEEEEEeecce-----
Confidence 5899999999999887799999988632 22 222223466677777662 3355666778899999998732
Q ss_pred ceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc--------cceeeeecCCC
Q 008939 215 KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD--------QTQFSVAHPRY 286 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 286 (548)
....+. .....+..++|+|+|+++|.+...|-.|.||.+.+........+.... ..-..+.....
T Consensus 83 -w~ckId------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 83 -WYCKID------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred -eEEEec------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeeccc
Confidence 111111 146789999999999879999999999999999874322222211110 00000000000
Q ss_pred ----------CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEE
Q 008939 287 ----------SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI 356 (548)
Q Consensus 287 ----------~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l 356 (548)
..-..++.++..+-..+.+.|+|||+.|+ |||.--.-.+..+. ..-.+..++|+|.+++|
T Consensus 156 Ckdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aYe-~~lG~k~v~wsP~~qfl 225 (447)
T KOG4497|consen 156 CKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFL 225 (447)
T ss_pred HHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecchhhheeeeee-eccceeEEEeccccceE
Confidence 00001111222234455566666655444 44432111121221 12358889999999999
Q ss_pred EEEeCCCeEEEEECC
Q 008939 357 LTGGEDDLVQVWSME 371 (548)
Q Consensus 357 ~sgs~dg~I~vwd~~ 371 (548)
++|+.|+.++|.+--
T Consensus 226 avGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 226 AVGSYDQMLRVLNHF 240 (447)
T ss_pred Eeeccchhhhhhcee
Confidence 999999999986543
No 196
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.69 E-value=6.1e-16 Score=152.37 Aligned_cols=194 Identities=22% Similarity=0.334 Sum_probs=150.4
Q ss_pred EEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 194 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 194 g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
.+..|.|-||+++.. ++..-..+ .+..+...|+++.|.|.+...|++++.||.|++|.+..++.....
T Consensus 599 ~g~gG~iai~el~~P----GrLPDgv~----p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~---- 666 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEP----GRLPDGVM----PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE---- 666 (1012)
T ss_pred cCCCceEEEEEcCCC----CCCCcccc----cccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc----
Confidence 355689999999863 22211111 111267889999999988879999999999999999876543332
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd 352 (548)
..|-..+.+|...|+.+.|+| ....|++++.|-+|++||+.+++....+.+|.+.|..++||||
T Consensus 667 ---------------~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd 731 (1012)
T KOG1445|consen 667 ---------------MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD 731 (1012)
T ss_pred ---------------CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCC
Confidence 356678889999999999999 5678999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCce-eEEeccCCCC-CeEEEEEecCCCCCCCCCCccceeEEEEEEeCC----CeEEEEECC
Q 008939 353 GKYILTGGEDDLVQVWSMEDRK-VVAWGEGHNS-WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD----TRLLLWDLE 426 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~-~~~~~~~h~~-~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D----g~i~lwd~~ 426 (548)
|+.+++.+.||.|++|+-+.++ ++..-.+..+ .--.|.|.- || ++++..+.| .+|.+||..
T Consensus 732 Gr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-------dg------r~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 732 GRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-------DG------RIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred CcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-------cC------cEEEEecccccchhhhhhhhhh
Confidence 9999999999999999998764 4444433221 223466665 77 566666655 468888876
Q ss_pred C
Q 008939 427 M 427 (548)
Q Consensus 427 ~ 427 (548)
+
T Consensus 799 ~ 799 (1012)
T KOG1445|consen 799 T 799 (1012)
T ss_pred h
Confidence 5
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=9.9e-16 Score=148.34 Aligned_cols=202 Identities=16% Similarity=0.262 Sum_probs=146.2
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
.|+.++.||.+.+.+..- + .-.....|.+.+.+-.|+|||.-|++++.||.|+
T Consensus 77 ~~~i~s~DGkf~il~k~~--r-------------------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iK 129 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA--R-------------------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIK 129 (737)
T ss_pred eEEEEcCCceEEEecccc--h-------------------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEE
Confidence 799999999999887542 1 1233456779999999999999999999999999
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCc
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
+|.- +|-+..++.....+|.|++|.|+.+.++-+ ..+.+.|=.+.....+..+++|++-|.++.|+| ..
T Consensus 130 iWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-------~s-- 198 (737)
T KOG1524|consen 130 IWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWST-------QS-- 198 (737)
T ss_pred EEec-cchHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCc-------cc--
Confidence 9974 465555555567789999999998876665 345677777776666778889999999999998 55
Q ss_pred cceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecC
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH 484 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h 484 (548)
.+|+++|+|-..++||-.... +..-..|
T Consensus 199 ----~lI~sgGED~kfKvWD~~G~~------------------------------------------------Lf~S~~~ 226 (737)
T KOG1524|consen 199 ----NIIASGGEDFRFKIWDAQGAN------------------------------------------------LFTSAAE 226 (737)
T ss_pred ----cceeecCCceeEEeecccCcc------------------------------------------------cccCChh
Confidence 699999999999999965322 2222356
Q ss_pred CCCeeEEEEeCCeEEEEECCCeEEEEeCCCCCccccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 485 TEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 485 ~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~~~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
..+|++++|.||.+...+.-.++|+ ..+....++ ++|+||..++.|+..|-+
T Consensus 227 ey~ITSva~npd~~~~v~S~nt~R~---------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 227 EYAITSVAFNPEKDYLLWSYNTARF---------SSPRVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred ccceeeeeeccccceeeeeeeeeee---------cCCCccceEEEEEcCCCceeeccccCceE
Confidence 7777777777775433333334441 112233444 667777777776666543
No 198
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=2.8e-15 Score=145.23 Aligned_cols=220 Identities=17% Similarity=0.271 Sum_probs=157.0
Q ss_pred CCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCc-eEEEecCC----CCCCceEEEEEcCCcEEEE
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNP-VCHAFDQD----AKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~-~~~~~~p~----~~~~~~l~~g~~dg~I~iw 203 (548)
|.+.+.++.|......+.++.++.+.+|.-.... .+..+...++.+ +.+-.-+- ++....++++++||.+.+.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~--s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD--SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccch--hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4566678888888877777777766665533322 222222222222 11111111 1234689999999999988
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
+-.. ++ .+....|.+.+.+-.|+|+|. -|+++++||.|++|.-.- -.+..+
T Consensus 91 ~k~~-------rV------E~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsG--MLRStl------------- 141 (737)
T KOG1524|consen 91 NKSA-------RV------ERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSG--MLRSTV------------- 141 (737)
T ss_pred cccc-------hh------hhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEeccc--hHHHHH-------------
Confidence 7443 11 111224899999999999999 799999999999998542 111111
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
-....+|.|++|.|+.+.++.+. .+.+.|=.+.....+...++|.+-|.++.|++..+++++|++|-
T Consensus 142 ------------~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~ 208 (737)
T KOG1524|consen 142 ------------VQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDF 208 (737)
T ss_pred ------------hhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCce
Confidence 11127899999999887776664 45677777776666777899999999999999999999999999
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
..+|||-. |+.+..-..|+.+|++++|.|
T Consensus 209 kfKvWD~~-G~~Lf~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 209 RFKIWDAQ-GANLFTSAAEEYAITSVAFNP 237 (737)
T ss_pred eEEeeccc-CcccccCChhccceeeeeecc
Confidence 99999975 667777778999999999999
No 199
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4.9e-16 Score=149.07 Aligned_cols=297 Identities=14% Similarity=0.140 Sum_probs=216.2
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
-....|.+.|..+.|+..|+.++++++| .|.+||+..+. ..+.....|..++....|-|... ...|+..+.||+|++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~-~~l~f~SGH~~NvfQaKFiP~s~-d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS-PKLSFESGHCNNVFQAKFIPFSG-DRTIVTSSRDGQVRV 213 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccC-cccccccccccchhhhhccCCCC-CcCceeccccCceee
Confidence 3567899999999999999999999999 99999998754 23344455777888888988864 567899999999998
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
=.+.......+ .... .-|.++|..++.-|+....|.+++.|+.+.-+|++.+........
T Consensus 214 s~i~~t~~~e~--t~rl-------~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c----------- 273 (559)
T KOG1334|consen 214 SEILETGYVEN--TKRL-------APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC----------- 273 (559)
T ss_pred eeeccccceec--ceec-------ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee-----------
Confidence 76654211111 1111 128999999999999998999999999999999987432211110
Q ss_pred cCCCCCCCCeeEeeecC---CCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeE------EEeeee------cCCceEE
Q 008939 283 HPRYSKSNPIARWHICQ---GSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQL------ICGGKS------YYGALLC 346 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~---~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~------~~~~~~------~~~~v~~ 346 (548)
-..+. -..+.++..| +..++++++.|-.+++||.+.-.. +..+.. ..-.|+|
T Consensus 274 ------------r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITg 341 (559)
T KOG1334|consen 274 ------------READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITG 341 (559)
T ss_pred ------------eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCccccee
Confidence 01111 2466788888 445899999999999999864221 122211 2236999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCC--c----------eeEEe-ccCCCC--CeEEEEEe-cCCCCCCCCCCccceeEE
Q 008939 347 CAWSMDGKYILTGGEDDLVQVWSMED--R----------KVVAW-GEGHNS--WVSGVAFD-SYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 347 l~~spdg~~l~sgs~dg~I~vwd~~~--~----------~~~~~-~~~h~~--~V~~v~~~-p~~~~~~~dg~~~~~~~~ 410 (548)
++|+.++.-|++.-.|-.|+++.-.- + ..+.. ++||.. .|.++-|- | .. .+
T Consensus 342 l~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-------rs------Ey 408 (559)
T KOG1334|consen 342 LVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-------RS------EY 408 (559)
T ss_pred EEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccC-------cc------ce
Confidence 99998877777777889999994322 2 22333 678864 57788773 3 33 58
Q ss_pred EEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeE
Q 008939 411 FGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG 490 (548)
Q Consensus 411 l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~ 490 (548)
+++|+.-|.|.|||-.+++.++-++. ...-|+|
T Consensus 409 VvSGSDCGhIFiW~K~t~eii~~Meg-----------------------------------------------Dr~VVNC 441 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWDKKTGEIIRFMEG-----------------------------------------------DRHVVNC 441 (559)
T ss_pred EEecCccceEEEEecchhHHHHHhhc-----------------------------------------------ccceEec
Confidence 99999999999999999888765554 2237899
Q ss_pred EEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 491 LIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 491 l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
|.-+|.. |++.+-|.-||||...+
T Consensus 442 LEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 442 LEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred cCCCCCCchhhccCCccceeeecCCc
Confidence 9999964 99999999999998644
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=7.3e-15 Score=150.55 Aligned_cols=264 Identities=14% Similarity=0.149 Sum_probs=188.8
Q ss_pred CCCceeEEeCCCCCEEEEec-CC-eEEEEEccCCCCCCeEEE----ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 130 STSMTNTNFDGKGTYIIFNV-GD-AIFISDLNSQDKDPIKSI----HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~-~d-~v~vwd~~~~~~~~i~~~----~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
...++++.|+|....+++++ .+ .|.+||+..+...+...+ .-|...++.+.|..+..+ ..+++++.||.|..|
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~-~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHN-TEFFSLSSDGSICSW 320 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCC-CceEEEecCCcEeee
Confidence 56788999999777666644 44 999999998764322222 236778899999988664 779999999999999
Q ss_pred Eeeecccccccceeeeeeec-cCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcC-CCCCCCCCcccccccceeee
Q 008939 204 SLRQQLQDVGKKLVGAHHYN-KDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKS-KDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~~ 281 (548)
+++.........+. ..... .........+++++|.+...+.|++|..+|.|+--+-. .......
T Consensus 321 ~~~~l~~P~e~~~~-~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~------------- 386 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLL-ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV------------- 386 (555)
T ss_pred eccccccchhhccc-ccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc-------------
Confidence 88763221111111 11110 01111346789999999999899999999999873322 1111100
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCC-CCeEEEeeeecCCceEEEEEccCCC-EEEE
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYS-KEQLICGGKSYYGALLCCAWSMDGK-YILT 358 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~-~~~~~~~~~~~~~~v~~l~~spdg~-~l~s 358 (548)
..+++..+..|.++|+++.++|=+. .+++++ |.+++||... ...++..+..+...|++++|||-.. .+++
T Consensus 387 ------~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 387 ------SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ------cccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 1233456667889999999999554 455554 9999999987 6667777777888899999999764 6777
Q ss_pred EeCCCeEEEEECCCc--eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 359 GGEDDLVQVWSMEDR--KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 359 gs~dg~I~vwd~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+..||.|.+||+... .++.....+......+.|++ +| ..|+.|...|.+.+|++...
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~-------~g------~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSP-------NG------KLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCC-------CC------cEEEEecCCCcEEEEEcCch
Confidence 888999999999754 45555555566667788887 78 78999999999999999643
No 201
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.68 E-value=6.4e-15 Score=143.03 Aligned_cols=151 Identities=16% Similarity=0.309 Sum_probs=113.8
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc---------cccce-eeeeeeccC------CcccCcceEE
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD---------VGKKL-VGAHHYNKD------GSVNNSRCTS 235 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~---------~~~~~-~~~~~~~~~------~~~~~~~v~~ 235 (548)
.+..++|+.|-|.. ...++++..+|.+++||.+-.... .+... +........ ..+..+.|+.
T Consensus 218 ~ktsvT~ikWvpg~--~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~ 295 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGS--DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINE 295 (636)
T ss_pred cccceEEEEEEeCC--CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccc
Confidence 45799999999984 458899999999999987531100 00000 000000000 1134678999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEE
Q 008939 236 VTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLA 315 (548)
Q Consensus 236 l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~ 315 (548)
++|+||+. +||+.+.||.++|||..+.. .+...+..=+...|++|||||+||+
T Consensus 296 f~FS~DG~-~LA~VSqDGfLRvF~fdt~e--------------------------Llg~mkSYFGGLLCvcWSPDGKyIv 348 (636)
T KOG2394|consen 296 FAFSPDGK-YLATVSQDGFLRIFDFDTQE--------------------------LLGVMKSYFGGLLCVCWSPDGKYIV 348 (636)
T ss_pred eeEcCCCc-eEEEEecCceEEEeeccHHH--------------------------HHHHHHhhccceEEEEEcCCccEEE
Confidence 99999999 99999999999999998721 1111111227899999999999999
Q ss_pred EEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc
Q 008939 316 TVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM 351 (548)
Q Consensus 316 s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp 351 (548)
+|+.|..|.||.+..++++..-++|..+|..++|.|
T Consensus 349 tGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 349 TGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999999999999984
No 202
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.67 E-value=4.1e-16 Score=158.10 Aligned_cols=248 Identities=17% Similarity=0.199 Sum_probs=188.2
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
..+|-++|+|+.|+..|.+|+++++| .++||..+++. ++..+..|...++.++.+.+ ..++++++.|..|++|-
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~--~lAs~rGhs~ditdlavs~~---n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR--CLASCRGHSGDITDLAVSSN---NTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchh--hhccCCCCccccchhccchh---hhhhhhcccCceEEEEe
Confidence 34899999999999999999999999 99999988854 89999999999999999887 77899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+... ..+. .+ ..|.+.|++|+|+|-. +.+.||++++||.+.........+.....
T Consensus 261 l~~~-----~pvs-vL------rghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~-------- 315 (1113)
T KOG0644|consen 261 LPDG-----APVS-VL------RGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTE-------- 315 (1113)
T ss_pred cCCC-----chHH-HH------hccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCccc--------
Confidence 8762 2221 11 1489999999999954 67899999999998321111100000000
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC-CEEEEEeCCC
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG-KYILTGGEDD 363 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~sgs~dg 363 (548)
...+..+.|...+.-+++++.|+.-+.|.+..... +...+.-+..+.|- .+.+++-.+.
T Consensus 316 --------------~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~ 375 (1113)
T KOG0644|consen 316 --------------KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDH 375 (1113)
T ss_pred --------------ccceeeeeccccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeee
Confidence 14466777888888999999999999887752211 11111112222222 4567777888
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
.+++|++-++..++.+.+|...+..+.++|+ |- ....+++.||...|||+-.+..++...
T Consensus 376 ~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf------n~------ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 376 RLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF------NP------RIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred EeeeeecccchhhhhhcccccceeeeeecCC------Cc------HhhhhccCCCceEeeecccCCcceeee
Confidence 9999999999999999999999999999994 44 577899999999999999887766544
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.67 E-value=4.6e-15 Score=147.09 Aligned_cols=275 Identities=15% Similarity=0.192 Sum_probs=194.3
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN 254 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~ 254 (548)
.+..++|-|+ |..|+.+. +..+++||... +..+.. .+.|++.|+|++|+.+|+ .|++|+.|..
T Consensus 14 ci~d~afkPD---GsqL~lAA-g~rlliyD~nd-----G~llqt-------LKgHKDtVycVAys~dGk-rFASG~aDK~ 76 (1081)
T KOG1538|consen 14 CINDIAFKPD---GTQLILAA-GSRLLVYDTSD-----GTLLQP-------LKGHKDTVYCVAYAKDGK-RFASGSADKS 76 (1081)
T ss_pred chheeEECCC---CceEEEec-CCEEEEEeCCC-----cccccc-------cccccceEEEEEEccCCc-eeccCCCcee
Confidence 6788899999 55666654 45799999876 222211 125999999999999999 9999999999
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI 334 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~ 334 (548)
|.+|....++... -.|...|.||.|+|-.+.|++++-. ..-+|...... +
T Consensus 77 VI~W~~klEG~Lk----------------------------YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V 126 (1081)
T KOG1538|consen 77 VIIWTSKLEGILK----------------------------YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-V 126 (1081)
T ss_pred EEEecccccceee----------------------------eccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-H
Confidence 9999976543211 2366899999999988899998754 46788776433 2
Q ss_pred EeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeE---EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE
Q 008939 335 CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV---AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 335 ~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~---~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
...+ ....+.+++|..||++|+.|-.||+|.+-+-. ++.. .+--|.+++|++++|+| ... ......+
T Consensus 127 ~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p-------~sg-~G~~di~ 196 (1081)
T KOG1538|consen 127 SKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNP-------SSG-EGRNDIL 196 (1081)
T ss_pred Hhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecC-------CCC-CCccceE
Confidence 2222 24578999999999999999999999998643 3332 23335789999999998 221 1122478
Q ss_pred EEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEE
Q 008939 412 GSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGL 491 (548)
Q Consensus 412 ~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l 491 (548)
+......++.++.+.....-..-...-...++.+-++| ..+.+|..++.+.++.. .+..+.++......|+.+
T Consensus 197 aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NG------Ey~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV 269 (1081)
T KOG1538|consen 197 AVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNG------EYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTV 269 (1081)
T ss_pred EEEeccceeEEEEecceeecccccCCCCchhheeccCC------cEEEEccCCCceEEEee-cCeEEeeccccceeEEEE
Confidence 88888899999988654332222121222333333333 55677777777777743 344455555567789999
Q ss_pred EEeCCe--EEEEECCCeEEEEeCC
Q 008939 492 IFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 492 ~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
+..|+. ++.|+.||+|--+++-
T Consensus 270 ~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 270 QAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEccCCceEEEEEccCeeehhhhH
Confidence 999974 9999999999999853
No 204
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.5e-14 Score=135.18 Aligned_cols=280 Identities=15% Similarity=0.121 Sum_probs=193.4
Q ss_pred ccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-cCCC
Q 008939 223 NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGS 301 (548)
Q Consensus 223 ~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~ 301 (548)
.++...|.+.|+.|.|+.+++ +|++|+.|-.+++|+++.- .... ..+|+..... |...
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~--~~~k------------------~~KPI~~~~~~H~SN 107 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDEL--MVRK------------------TPKPIGVMEHPHRSN 107 (609)
T ss_pred hhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHH--Hhhc------------------CCCCceeccCccccc
Confidence 344556999999999999988 9999999999999998641 0000 1244544433 4589
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee--cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce-eEE-
Q 008939 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK-VVA- 377 (548)
Q Consensus 302 v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~-~~~- 377 (548)
|.|++|.....+|++|..+++|...|+++.+.+..+.. ..+.|..+..+|-.+.|++.+.++.|.+||.+... .+.
T Consensus 108 IF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 108 IFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL 187 (609)
T ss_pred eEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence 99999999889999999999999999999988776542 23589999999999999999999999999998765 221
Q ss_pred -eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee----ecCCC----CCCceecCC
Q 008939 378 -WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL----RRGPL----GGSPTFSTG 448 (548)
Q Consensus 378 -~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~----~~~~~----~~~~~~~~~ 448 (548)
.+.........+.|+| .- ..+|++.+..+-+-+||++..+...-- ...+. -....|++.
T Consensus 188 ~~~AN~~~~F~t~~F~P-------~~-----P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~ 255 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHP-------ET-----PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS 255 (609)
T ss_pred eeecCCCccceeeeecC-------CC-----ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC
Confidence 1223456677889998 32 168899999999999999876532110 00011 133455555
Q ss_pred CCccccCCeeeecccCCCCceeecCCCC-ceEEeecC-------CCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCc--
Q 008939 449 SQSAHWDNVCPVGTLQPAPSMRDVPKLS-PLVAHRVH-------TEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAE-- 517 (548)
Q Consensus 449 ~~~~~~d~~~~~g~~~~~~~~~d~~~~~-~~~~~~~h-------~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~-- 517 (548)
+. .+..-.......++|+.... ++..+. | ...+.+++|..|+ +++|+.|=.|.+|.++....
T Consensus 256 G~------Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~ 328 (609)
T KOG4227|consen 256 GN------QFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSY 328 (609)
T ss_pred CC------eehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCcccc
Confidence 52 11111123345566665533 333332 2 2357888998886 99999999999999876431
Q ss_pred --ccc---------------------CCCCcE--EEecCCCCceEeeecc
Q 008939 518 --SQS---------------------SSSETV--LSTSSKDKPLLSSKVV 542 (548)
Q Consensus 518 --~~~---------------------~~~~~v--~~~s~d~~~l~s~~~~ 542 (548)
.+. +|..-+ +.|+|-..+|+++++.
T Consensus 329 G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE 378 (609)
T KOG4227|consen 329 GFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVE 378 (609)
T ss_pred CccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchh
Confidence 122 222211 2678888888887765
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=2e-14 Score=147.99 Aligned_cols=219 Identities=16% Similarity=0.168 Sum_probs=143.4
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC---CcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|+|||..... ...+..+...+...+|+|+ +..|+..+.+ .+|++||+++.. ...+..
T Consensus 185 ~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPD---G~~la~~s~~~~~~~i~i~dl~tg~----~~~l~~--------- 245 (429)
T PRK01742 185 EVRVADYDGFN---QFIVNRSSQPLMSPAWSPD---GSKLAYVSFENKKSQLVVHDLRSGA----RKVVAS--------- 245 (429)
T ss_pred EEEEECCCCCC---ceEeccCCCccccceEcCC---CCEEEEEEecCCCcEEEEEeCCCCc----eEEEec---------
Confidence 89999987643 3445556678899999999 7778777654 369999987521 111110
Q ss_pred cCcceEEEEEecCCCcEEEE-EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVV-GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
.......++|+|+++ .|+. ...+|.+.||.++..+. .+..+..+...+....|
T Consensus 246 ~~g~~~~~~wSPDG~-~La~~~~~~g~~~Iy~~d~~~~-------------------------~~~~lt~~~~~~~~~~w 299 (429)
T PRK01742 246 FRGHNGAPAFSPDGS-RLAFASSKDGVLNIYVMGANGG-------------------------TPSQLTSGAGNNTEPSW 299 (429)
T ss_pred CCCccCceeECCCCC-EEEEEEecCCcEEEEEEECCCC-------------------------CeEeeccCCCCcCCEEE
Confidence 122234689999999 5555 45788766665443111 12223334456788999
Q ss_pred CCCCCEEEEEE-CCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCC
Q 008939 308 STDGTYLATVG-RDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 385 (548)
Q Consensus 308 sp~g~~l~s~~-~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~ 385 (548)
+|||+.|+..+ .++..+||++... .....+ .+.. .++.|+|||++|+..+.++ +.+||+.+++.......+ .
T Consensus 300 SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~ 373 (429)
T PRK01742 300 SPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--L 373 (429)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--C
Confidence 99999877665 5788888877432 212222 3333 4578999999998887765 556999988654333322 2
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC--CCeEEeee
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE--MDEIVVPL 434 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~--~~~~~~~~ 434 (548)
...+.|+| || .+|+.++.++.+.+|++. .+..++.+
T Consensus 374 ~~~~~~sP-------dG------~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 374 DESPSISP-------NG------IMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred CCCceECC-------CC------CEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 35678999 99 789988889988888763 34444444
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.6e-14 Score=148.61 Aligned_cols=218 Identities=19% Similarity=0.252 Sum_probs=150.3
Q ss_pred CCCCCceeEEeCCCCCEEEEecC---C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcEEE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVG---D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYS 202 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~---d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~i 202 (548)
.|...+...+|+|||+.|++.+. + .|++||+.++..+.+..+ +......+|+|+ +..|+.+. .+|.+.|
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~---~g~~~~~~wSPD---G~~La~~~~~~g~~~I 274 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF---RGHNGAPAFSPD---GSRLAFASSKDGVLNI 274 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC---CCccCceeECCC---CCEEEEEEecCCcEEE
Confidence 45677889999999999998653 2 799999987542333332 234457899999 77777765 6787655
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|.++.. ...+.... .+...+....|+|+++.+++++..+|...||+++..+..
T Consensus 275 y~~d~~----~~~~~~lt-------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---------------- 327 (429)
T PRK01742 275 YVMGAN----GGTPSQLT-------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---------------- 327 (429)
T ss_pred EEEECC----CCCeEeec-------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----------------
Confidence 544321 11111111 134567889999999944555667889999987653221
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
...+ .+.+ ....|+|||++|+..+.++ +.+||+.+++.......+ ....+.|+|||++|+.++.+
T Consensus 328 ---------~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 328 ---------ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred ---------eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcC
Confidence 1111 1222 4578999999999888765 556999888654322222 23567899999999999999
Q ss_pred CeEEEEEC--CCceeEEeccCCCCCeEEEEEec
Q 008939 363 DLVQVWSM--EDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 363 g~I~vwd~--~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
+.+.+|++ .+++.+..+..|.+.+..++|+|
T Consensus 393 g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 393 GLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 98888876 35778888888988899999988
No 207
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1.3e-12 Score=119.71 Aligned_cols=300 Identities=14% Similarity=0.156 Sum_probs=191.9
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCC--CceEEEecCCCCCCceEEEEEcC------CcEEEE
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNS--NPVCHAFDQDAKDGHDLLIGLNS------GDVYSV 203 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~--~~~~~~~~p~~~~~~~l~~g~~d------g~I~iw 203 (548)
....++|+.|...++++.++-.+||+++- .+......+... .+.-+-|..+ -+.++|+.+ ..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P--~ke~~~r~~~~~G~~~veMLfR~N----~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDP--FKESASRQFIDGGFKIVEMLFRSN----YLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCc--hhhhhhhccccCchhhhhHhhhhc----eEEEecCCCCCCCCCceEEEE
Confidence 34569999999999999999999999874 122222222222 2222233322 234455443 359999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
|=. .++.+.... ...+|.+|.+.++ .|++.- .+.|+||....+-+....+....++
T Consensus 81 DD~------k~~~i~el~-------f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NP------- 136 (346)
T KOG2111|consen 81 DDL------KERCIIELS-------FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP------- 136 (346)
T ss_pred ecc------cCcEEEEEE-------eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCC-------
Confidence 922 233333333 4788999999887 455554 4789999987543332222221111
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECC--CCCEEEE-EECCCeEEEEeCCCCeE--EEeeeecCCceEEEEEccCCCEEEE
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFST--DGTYLAT-VGRDGYLRVFDYSKEQL--ICGGKSYYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s-~~~dg~v~vwd~~~~~~--~~~~~~~~~~v~~l~~spdg~~l~s 358 (548)
... ++.+| +..+||. |-.-|.|+|-|+...+. ...+.+|...|.|++++-+|..+|+
T Consensus 137 ----------------kGl--C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vAT 198 (346)
T KOG2111|consen 137 ----------------KGL--CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVAT 198 (346)
T ss_pred ----------------Cce--EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEE
Confidence 122 33344 3445554 44569999999976554 3678899999999999999999999
Q ss_pred EeCCCe-EEEEECCCceeEEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 359 GGEDDL-VQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 359 gs~dg~-I~vwd~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
++..|+ |||||.++++.+++++. ....|.+|+|+| |+ .+|+..+.-|+|.|+.++....-..
T Consensus 199 aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-------~~------s~LavsSdKgTlHiF~l~~~~~~~~-- 263 (346)
T KOG2111|consen 199 ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-------NS------SWLAVSSDKGTLHIFSLRDTENTED-- 263 (346)
T ss_pred eccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-------Cc------cEEEEEcCCCeEEEEEeecCCCCcc--
Confidence 999885 79999999999999873 456899999999 88 7999999999999999886442211
Q ss_pred cCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCC
Q 008939 436 RGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~ 513 (548)
. ..++.+ +...+ .+..+ ....+..++...++..-++|-.+ .++..+.||.-.-+.+.
T Consensus 264 ~---~SSl~~--------~~~~l--------pky~~--S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 264 E---SSSLSF--------KRLVL--------PKYFS--SEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred c---cccccc--------ccccc--------chhcc--cceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 0 000000 00000 00000 01122333344566777888765 58999999987766654
Q ss_pred CC
Q 008939 514 GV 515 (548)
Q Consensus 514 ~~ 515 (548)
..
T Consensus 323 ~~ 324 (346)
T KOG2111|consen 323 PK 324 (346)
T ss_pred cc
Confidence 43
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=7.1e-15 Score=139.26 Aligned_cols=196 Identities=18% Similarity=0.233 Sum_probs=151.3
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCE
Q 008939 234 TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTY 313 (548)
Q Consensus 234 ~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~ 313 (548)
.+++|++++. .|++++.||.+|||+... ..++.....|.+.|.++.|+|||++
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps--------------------------~~t~l~e~~~~~eV~DL~FS~dgk~ 200 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPS--------------------------MLTILEEIAHHAEVKDLDFSPDGKF 200 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCc--------------------------chhhhhhHhhcCccccceeCCCCcE
Confidence 7899999998 999999999999999654 2345555677899999999999999
Q ss_pred EEEEECCCeEEEEeCCCCeEEEeee--ecCCceEEEEEccCC-----CEEEEEeCCCeEEEEECCCcee-----EEeccC
Q 008939 314 LATVGRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMDG-----KYILTGGEDDLVQVWSMEDRKV-----VAWGEG 381 (548)
Q Consensus 314 l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~spdg-----~~l~sgs~dg~I~vwd~~~~~~-----~~~~~~ 381 (548)
|++.+.| ..+||+.+++..+.... .....+..|.|+-|+ .+++.-..-+.|+.||+..... ......
T Consensus 201 lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~ 279 (398)
T KOG0771|consen 201 LASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK 279 (398)
T ss_pred EEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh
Confidence 9999999 89999999996655443 223356778888877 2333344456777777643221 111112
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeec
Q 008939 382 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVG 461 (548)
Q Consensus 382 h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g 461 (548)
-...|++++.++ || ++++.|+.||.|.|++..+-++++-++.
T Consensus 280 ~~~siSsl~VS~-------dG------kf~AlGT~dGsVai~~~~~lq~~~~vk~------------------------- 321 (398)
T KOG0771|consen 280 RFKSISSLAVSD-------DG------KFLALGTMDGSVAIYDAKSLQRLQYVKE------------------------- 321 (398)
T ss_pred ccCcceeEEEcC-------CC------cEEEEeccCCcEEEEEeceeeeeEeehh-------------------------
Confidence 345799999999 99 8999999999999999988776654443
Q ss_pred ccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCC
Q 008939 462 TLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 462 ~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~ 516 (548)
.|...|+.|.|+|| ++++.+.|..+.+..+.-..
T Consensus 322 ---------------------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 322 ---------------------AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred ---------------------hheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 68889999999997 48889999998888876533
No 209
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=2.7e-13 Score=126.44 Aligned_cols=177 Identities=18% Similarity=0.341 Sum_probs=138.7
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNS 231 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (548)
.+++.+++... .|..+.| +..+.+|.++.+ +|++.-.+. |+|||++. .++...+... ..+..
T Consensus 69 ~Lkv~~~Kk~~--~ICe~~f-pt~IL~VrmNr~-----RLvV~Lee~-IyIydI~~------MklLhTI~t~---~~n~~ 130 (391)
T KOG2110|consen 69 KLKVVHFKKKT--TICEIFF-PTSILAVRMNRK-----RLVVCLEES-IYIYDIKD------MKLLHTIETT---PPNPK 130 (391)
T ss_pred eEEEEEcccCc--eEEEEec-CCceEEEEEccc-----eEEEEEccc-EEEEeccc------ceeehhhhcc---CCCcc
Confidence 68999998744 7777776 459999999876 677777664 99999987 2222222111 11455
Q ss_pred ceEEEEEecCCCcEEEE-Ee-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 232 RCTSVTWVPGGDGAFVV-GH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s-~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
.+.++.+++.+. +|+- ++ ..|.|+|||+.+ ..++..+..|++.+-+++|++
T Consensus 131 gl~AlS~n~~n~-ylAyp~s~t~GdV~l~d~~n--------------------------l~~v~~I~aH~~~lAalafs~ 183 (391)
T KOG2110|consen 131 GLCALSPNNANC-YLAYPGSTTSGDVVLFDTIN--------------------------LQPVNTINAHKGPLAALAFSP 183 (391)
T ss_pred ceEeeccCCCCc-eEEecCCCCCceEEEEEccc--------------------------ceeeeEEEecCCceeEEEECC
Confidence 566777766666 5555 33 458999999986 467888999999999999999
Q ss_pred CCCEEEEEECCCe-EEEEeCCCCeEEEeeeecC--CceEEEEEccCCCEEEEEeCCCeEEEEECCCc
Q 008939 310 DGTYLATVGRDGY-LRVFDYSKEQLICGGKSYY--GALLCCAWSMDGKYILTGGEDDLVQVWSMEDR 373 (548)
Q Consensus 310 ~g~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~ 373 (548)
+|.+||+++..|+ ||||.+.+|+.+..++... ..|.+++|+||+++|++.++.++|++|.+++.
T Consensus 184 ~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 184 DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9999999999997 7899999999998887533 36889999999999999999999999998754
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.6e-14 Score=136.94 Aligned_cols=197 Identities=22% Similarity=0.275 Sum_probs=144.2
Q ss_pred eEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEE
Q 008939 177 VCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLY 256 (548)
Q Consensus 177 ~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~ 256 (548)
.+++|+.+ +..|++|..||.+++|+..+. ..+.... .|...|.++.|+||++ .|++-+.| ..+
T Consensus 148 k~vaf~~~---gs~latgg~dg~lRv~~~Ps~-----~t~l~e~-------~~~~eV~DL~FS~dgk-~lasig~d-~~~ 210 (398)
T KOG0771|consen 148 KVVAFNGD---GSKLATGGTDGTLRVWEWPSM-----LTILEEI-------AHHAEVKDLDFSPDGK-FLASIGAD-SAR 210 (398)
T ss_pred eEEEEcCC---CCEeeeccccceEEEEecCcc-----hhhhhhH-------hhcCccccceeCCCCc-EEEEecCC-ceE
Confidence 89999998 889999999999999996652 2222212 2789999999999999 89999998 999
Q ss_pred EEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC---CE--EEEEECCCeEEEEeCCCC
Q 008939 257 VYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG---TY--LATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 257 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g---~~--l~s~~~dg~v~vwd~~~~ 331 (548)
||++++. .......+... ......+.|+.|+ .+ ++....-+.|+.||+...
T Consensus 211 VW~~~~g-~~~a~~t~~~k-----------------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w 266 (398)
T KOG0771|consen 211 VWSVNTG-AALARKTPFSK-----------------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLW 266 (398)
T ss_pred EEEeccC-chhhhcCCccc-----------------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeee
Confidence 9999974 22222221111 1234456777665 22 222334456777666432
Q ss_pred e------EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc-CCCCCeEEEEEecCCCCCCCCCCc
Q 008939 332 Q------LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 332 ~------~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
. ....+. ....|.+++.++||++++.|+.||.|.|++..+.+.++..+ .|...|+.|.|+| |.
T Consensus 267 ~~~~~l~~~~~~~-~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-------ds-- 336 (398)
T KOG0771|consen 267 SGSNFLRLRKKIK-RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-------DS-- 336 (398)
T ss_pred ccccccchhhhhh-ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-------Cc--
Confidence 1 111122 23469999999999999999999999999999988776664 7999999999999 88
Q ss_pred cceeEEEEEEeCCCeEEEEECCCC
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+++++.+.|..+.+..+.-.
T Consensus 337 ----r~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 337 ----RYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ----CcccccccCCceeEEEEeec
Confidence 68888999988888877653
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=2.4e-13 Score=143.75 Aligned_cols=236 Identities=15% Similarity=0.146 Sum_probs=163.6
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
.|..++.|...+..++.++.. +.++++|+.||+|++|+++....+. ........+.. ...++.++...+.++
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~--~s~FvsgS~DGtVKvW~~~k~~~~~-~s~rS~ltys~----~~sr~~~vt~~~~~~- 1111 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEH--TSLFVSGSDDGTVKVWNLRKLEGEG-GSARSELTYSP----EGSRVEKVTMCGNGD- 1111 (1431)
T ss_pred EeehhhhccccccceeecCCC--CceEEEecCCceEEEeeehhhhcCc-ceeeeeEEEec----cCCceEEEEeccCCC-
Confidence 466666677778888887773 5799999999999999998633221 11122222222 467899999999998
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec-CCCeE-EEEECC-CCC-EEEEEECC
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGSIN-SIAFST-DGT-YLATVGRD 320 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~-~~~~sp-~g~-~l~s~~~d 320 (548)
.+|+++.||.|++.+++............ +....+ .+.+. .-+|.. .+. .|+.+...
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~-------------------ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~ 1172 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQV-------------------RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDL 1172 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeee-------------------ecccccCCCceEEeecccccccceeEEEEEec
Confidence 89999999999999998621111111000 000000 12333 333443 333 78888889
Q ss_pred CeEEEEeCCCCeEEEeee--ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc-CCCCCeEEEEEecCCCC
Q 008939 321 GYLRVFDYSKEQLICGGK--SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQ 397 (548)
Q Consensus 321 g~v~vwd~~~~~~~~~~~--~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~ 397 (548)
+.|..||+++......++ ...+.|++++.+|.+.++++|...|.+.+||++-+.++..++ ++..+++.|..+|....
T Consensus 1173 ~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~ 1252 (1431)
T KOG1240|consen 1173 SRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQ 1252 (1431)
T ss_pred cceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCC
Confidence 999999998776554433 234789999999999999999999999999999998887776 46688999988873111
Q ss_pred CCCCCCccceeEEEEEEe-CCCeEEEEECCCCeEEeeeec
Q 008939 398 PNSDGTAETVMYRFGSVG-QDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
+. ..+.++. ..+.|.+|++.+|.+...+-.
T Consensus 1253 ---~S------~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1253 ---ES------VSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred ---Cc------eEEEecccCCCceeeeecccCcceEEEEc
Confidence 11 3344444 578899999999987766654
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.8e-13 Score=142.61 Aligned_cols=278 Identities=18% Similarity=0.225 Sum_probs=180.4
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC-cEEEEEeCCC
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD-GAFVVGHADG 253 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~-~~l~s~~~dg 253 (548)
.+..+.|+|- ...++++...-.|.+||.+. ++.+.. |. .+......|+.+.+-.+.+ .++++|+.||
T Consensus 1066 ~pk~~~~hpf---~p~i~~ad~r~~i~vwd~e~-----~~~l~~---F~-n~~~~~t~Vs~l~liNe~D~aLlLtas~dG 1133 (1387)
T KOG1517|consen 1066 PPKTLKFHPF---EPQIAAADDRERIRVWDWEK-----GRLLNG---FD-NGAFPDTRVSDLELINEQDDALLLTASSDG 1133 (1387)
T ss_pred CCceeeecCC---CceeEEcCCcceEEEEeccc-----Cceecc---cc-CCCCCCCccceeeeecccchhheeeeccCc
Confidence 4677888887 45688888778899999876 232211 11 1223567899998865433 3899999999
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec-------CCCeEEEEECCCCCEEEEEECCCeEEEE
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-------QGSINSIAFSTDGTYLATVGRDGYLRVF 326 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~sp~g~~l~s~~~dg~v~vw 326 (548)
.|+||+--...-. +.+.+..|..- .+.=.-++|-.+..+|++++.-..|+||
T Consensus 1134 vIRIwk~y~~~~~---------------------~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIW 1192 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWK---------------------KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIW 1192 (1387)
T ss_pred eEEEecccccccC---------------------CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEE
Confidence 9999985432100 01111112110 1111346777755566666668899999
Q ss_pred eCCCCeEEEeeeec-CCceEEEEEc-cCCCEEEEEeCCCeEEEEECCCc---eeEEeccCCCCC--eEEEEEecCCCCCC
Q 008939 327 DYSKEQLICGGKSY-YGALLCCAWS-MDGKYILTGGEDDLVQVWSMEDR---KVVAWGEGHNSW--VSGVAFDSYWSQPN 399 (548)
Q Consensus 327 d~~~~~~~~~~~~~-~~~v~~l~~s-pdg~~l~sgs~dg~I~vwd~~~~---~~~~~~~~h~~~--V~~v~~~p~~~~~~ 399 (548)
|....+++..+... ...++++.-+ +.|+.+++|..||.|++||.+.. ..+...+.|+.+ |..+.+.+
T Consensus 1193 Da~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~------ 1266 (1387)
T KOG1517|consen 1193 DAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR------ 1266 (1387)
T ss_pred ecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec------
Confidence 99988877765533 2345555432 34689999999999999999864 356777889888 99999987
Q ss_pred CCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceE
Q 008939 400 SDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV 479 (548)
Q Consensus 400 ~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~ 479 (548)
.|- ..|++++.||.|++||+++......+.. ... |
T Consensus 1267 -~G~-----~elvSgs~~G~I~~~DlR~~~~e~~~~i--------------v~~----------------~--------- 1301 (1387)
T KOG1517|consen 1267 -QGL-----GELVSGSQDGDIQLLDLRMSSKETFLTI--------------VAH----------------W--------- 1301 (1387)
T ss_pred -CCC-----cceeeeccCCeEEEEecccCccccccee--------------eec----------------c---------
Confidence 662 2599999999999999998522211110 000 0
Q ss_pred EeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCccccCCC--------C--cEEEecCCCCceEeee
Q 008939 480 AHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQSSSS--------E--TVLSTSSKDKPLLSSK 540 (548)
Q Consensus 480 ~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~~~~~--------~--~v~~~s~d~~~l~s~~ 540 (548)
.-...+++|..+++ .|++|+. +.|+||++.+......... . .-++|.|-.-.||.|.
T Consensus 1302 ---~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1302 ---EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred ---ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhcc
Confidence 01224888888886 4778877 9999999988764333111 1 2225666655566663
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.4e-13 Score=129.25 Aligned_cols=269 Identities=12% Similarity=0.123 Sum_probs=186.3
Q ss_pred CceeEEeCCCCC--EEEEe-cCCeEEEEEccCCCC----CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 132 SMTNTNFDGKGT--YIIFN-VGDAIFISDLNSQDK----DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 132 ~v~~~~~~~~g~--~l~~~-~~d~v~vwd~~~~~~----~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
.+..+.|..+++ .+... .++.+...++..... ..+..+.+....+..++.. ...|++|..+|.+.+|.
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-----dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-----DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-----CCEEEEEecCCcEEEEe
Confidence 444556654444 34444 344676666665321 1222444445555555554 33789999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC--CcEEEEEcCCCCCCCCCccccc-ccceeee
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD--GNLYVYEKSKDGAGDSSFPVIK-DQTQFSV 281 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d--g~v~vwd~~~~~~~~~~~~~~~-~~~~~~~ 281 (548)
.+.......+.+. .. ....+..|.-++..++++++|+.. ..+.+||+... ...+.-.-.+ +.-...
T Consensus 132 ~k~~d~hss~l~~-la--------~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~Lr- 200 (412)
T KOG3881|consen 132 DKSGDLHSSKLIK-LA--------TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLR- 200 (412)
T ss_pred ccCCcccccccee-ee--------cCCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccce-
Confidence 8752211111111 10 245677888888888788889988 89999999864 2111111010 000000
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCC--CCEEEEEECCCeEEEEeCCCCe-EEEeeeecCCceEEEEEccCCCEEEE
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRDGYLRVFDYSKEQ-LICGGKSYYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~s 358 (548)
+- -.++++.|-+. ...|++++.-+.||+||.+.++ ++..+.-...++.++...|+++++++
T Consensus 201 ----------VP------vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~ 264 (412)
T KOG3881|consen 201 ----------VP------VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYT 264 (412)
T ss_pred ----------ee------eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEE
Confidence 00 34677888886 7889999999999999998764 57777777889999999999999999
Q ss_pred EeCCCeEEEEECCCceeEEe-ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 359 GGEDDLVQVWSMEDRKVVAW-GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 359 gs~dg~I~vwd~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
|..-+.+..+|++.++.... +.+-.+.|++|..+| .+ .++++||.|..|+|+|+.+.+++..+...
T Consensus 265 gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-------~~------~~las~GLDRyvRIhD~ktrkll~kvYvK 331 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-------TH------PVLASCGLDRYVRIHDIKTRKLLHKVYVK 331 (412)
T ss_pred ecccchhheecccCceeeccccCCccCCcceEEEcC-------CC------ceEEeeccceeEEEeecccchhhhhhhhh
Confidence 99999999999999988766 889999999999999 76 79999999999999999997776555443
Q ss_pred CCCCCcee
Q 008939 438 PLGGSPTF 445 (548)
Q Consensus 438 ~~~~~~~~ 445 (548)
...+.+.+
T Consensus 332 s~lt~il~ 339 (412)
T KOG3881|consen 332 SRLTFILL 339 (412)
T ss_pred ccccEEEe
Confidence 44444444
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.1e-13 Score=129.90 Aligned_cols=228 Identities=15% Similarity=0.189 Sum_probs=172.5
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCC--CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC--CcEEEEEe
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQD--KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS--GDVYSVSL 205 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d--g~I~iwdl 205 (548)
..+|-.+.. .+|.++.+-....+++|..+.+. ..++..+..+ ..+..+.-.+.. ...+++|+.. ..+.+||+
T Consensus 105 ~~~I~gl~~-~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~--p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 105 TKSIKGLKL-ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTD--PYIVATGGKENINELKIWDL 180 (412)
T ss_pred cccccchhh-cCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCC--CceEecCchhcccceeeeec
Confidence 344444443 35556655555599999998644 3455555544 345555555553 3466779998 88999999
Q ss_pred eecccccccceeeeeeeccCCcc--cCcceEEEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGSV--NNSRCTSVTWVPG--GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~p~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
++ .+++.......++... ..-.++++.|.+. .. .|+++..-+.|++||.+.+
T Consensus 181 e~-----~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~-~fat~T~~hqvR~YDt~~q------------------ 236 (412)
T KOG3881|consen 181 EQ-----SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNY-KFATITRYHQVRLYDTRHQ------------------ 236 (412)
T ss_pred cc-----ceeeeeccCCCCccccceeeeeeccceecCCCCCc-eEEEEecceeEEEecCccc------------------
Confidence 87 3555544444443322 3456778999887 44 8999999999999999863
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe-eeecCCceEEEEEccCCCEEEEEe
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG-GKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
+.|+..+..-+.+|+++...|++++++++..-+.+..||++.+++... +++..+.|.++..+|.+++|++++
T Consensus 237 -------RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 237 -------RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred -------CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec
Confidence 567777777789999999999999999999999999999999998766 888999999999999999999999
Q ss_pred CCCeEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
-|+.|||+|+++.++++... -...+++|.+.+
T Consensus 310 LDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~ 341 (412)
T KOG3881|consen 310 LDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD 341 (412)
T ss_pred cceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence 99999999999977765543 345567777765
No 215
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=4.1e-13 Score=121.88 Aligned_cols=158 Identities=18% Similarity=0.403 Sum_probs=115.6
Q ss_pred EEEEEecCCCcEEEEEeC---------CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec-CCCeE
Q 008939 234 TSVTWVPGGDGAFVVGHA---------DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGSIN 303 (548)
Q Consensus 234 ~~l~~~p~~~~~l~s~~~---------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~ 303 (548)
..+.|+|.|..+++.... -|...+|.++..+ .++..+... .++|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-------------------------~~~~~i~l~~~~~I~ 63 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-------------------------IPVESIELKKEGPIH 63 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-------------------------CccceeeccCCCceE
Confidence 578899999855555541 1345566654322 233333332 35799
Q ss_pred EEEECCCCCEEEEE--ECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC---CeEEEEECCCceeEEe
Q 008939 304 SIAFSTDGTYLATV--GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED---DLVQVWSMEDRKVVAW 378 (548)
Q Consensus 304 ~~~~sp~g~~l~s~--~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d---g~I~vwd~~~~~~~~~ 378 (548)
+++|+|+++.|++. ..+..|.+||++ ++.+..+. ...++.+.|+|+|++|++++.+ |.|.+||+++.+.+..
T Consensus 64 ~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~ 140 (194)
T PF08662_consen 64 DVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST 140 (194)
T ss_pred EEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec
Confidence 99999999987655 357799999997 66666654 4678899999999999998754 6799999999988887
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC------CCeEEEEECCCCeEEeeee
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ------DTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~------Dg~i~lwd~~~~~~~~~~~ 435 (548)
.+ |. .++.++|+| || ++|+++.. |..++||++. |+++....
T Consensus 141 ~~-~~-~~t~~~WsP-------dG------r~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 141 FE-HS-DATDVEWSP-------DG------RYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred cc-cC-cEEEEEEcC-------CC------CEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 76 44 478999999 99 67777763 8899999985 66655443
No 216
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.54 E-value=1.5e-12 Score=120.33 Aligned_cols=247 Identities=17% Similarity=0.280 Sum_probs=168.0
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEcc-CCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLN-SQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~-~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
|...+.....-|...-++..+.| +++||--. .++ .--.-..+.+..++++.|.++ ...|++|..+|.+.-+.+.
T Consensus 23 ~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q-~wpsI~~~mP~~~~~~~y~~e---~~~L~vg~~ngtvtefs~s 98 (404)
T KOG1409|consen 23 SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ-YWPSIYHYMPSPCSAMEYVSE---SRRLYVGQDNGTVTEFALS 98 (404)
T ss_pred chhhhhhheeccCCCCeEEccccceeeeEEeccccc-cCchhhhhCCCCceEeeeecc---ceEEEEEEecceEEEEEhh
Confidence 33444444455556667777777 99999744 332 112223457889999999998 7789999999999998876
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
.. ..+ ..+.+....|..++..+-|+-..+ .+++.+.|..+. |.-...+...-.+-..
T Consensus 99 ed---fnk-----m~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~------------- 155 (404)
T KOG1409|consen 99 ED---FNK-----MTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFA-WHCTESGNRLGGYNFE------------- 155 (404)
T ss_pred hh---hhh-----cchhhhhhhhhcceeeEEecCCce-eEEEeccccceE-EEeeccCCcccceEee-------------
Confidence 52 122 123344456899999999998887 788888876654 4433222211111000
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC--CCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS--KEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
...+++.|.-. +...|...|.|.+..+. .-.++.++.+|.+.+.++.|.|....|++|..|..
T Consensus 156 -------------~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~ 220 (404)
T KOG1409|consen 156 -------------TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS 220 (404)
T ss_pred -------------ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc
Confidence 01111111111 44445555555554443 34567889999999999999999999999999999
Q ss_pred EEEEECCCce-eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 365 VQVWSMEDRK-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 365 I~vwd~~~~~-~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
|.+||+--++ ....+.+|...|..+.+.+ -- +.+.+++.||.|.+||++....
T Consensus 221 vi~wdigg~~g~~~el~gh~~kV~~l~~~~-------~t------~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 221 VIMWDIGGRKGTAYELQGHNDKVQALSYAQ-------HT------RQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred eEEEeccCCcceeeeeccchhhhhhhhhhh-------hh------eeeeeccCCCeEEEEeccceee
Confidence 9999997544 4567789999999998865 33 7899999999999999976543
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.1e-12 Score=120.05 Aligned_cols=206 Identities=16% Similarity=0.228 Sum_probs=141.4
Q ss_pred cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 171 FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 171 ~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
+....+..++|++- -..++++..|..|++||-........+. .....|+|++|-|.+...|++|+
T Consensus 96 ws~~dlr~~aWhqH---~~~fava~nddvVriy~ksst~pt~Lks------------~sQrnvtclawRPlsaselavgC 160 (445)
T KOG2139|consen 96 WSEIDLRGVAWHQH---IIAFAVATNDDVVRIYDKSSTCPTKLKS------------VSQRNVTCLAWRPLSASELAVGC 160 (445)
T ss_pred hhhcceeeEeechh---hhhhhhhccCcEEEEeccCCCCCceecc------------hhhcceeEEEeccCCcceeeeee
Confidence 34456667777775 4568999999999999866421111110 14678999999999887888888
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYS 329 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~ 329 (548)
.. -|.+|..+............. .....+..-.+| ..|++|.|.+||..+++++ .|..|.|||..
T Consensus 161 r~-gIciW~~s~tln~~r~~~~~s------------~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd 226 (445)
T KOG2139|consen 161 RA-GICIWSDSRTLNANRNIRMMS------------THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD 226 (445)
T ss_pred cc-eeEEEEcCccccccccccccc------------ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC
Confidence 85 488998865332221111000 001112222334 7899999999999999887 46789999999
Q ss_pred CCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCcccee
Q 008939 330 KEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 330 ~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
++..+.......+.+.-+.||||+.+|+++.-|+..++|+.... ....... -.+.|...+|+| +|.
T Consensus 227 tg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWsp-------cGs----- 293 (445)
T KOG2139|consen 227 TGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSP-------CGS----- 293 (445)
T ss_pred CCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecC-------CCC-----
Confidence 98876554444577889999999999999999999999966543 3333333 344899999999 882
Q ss_pred EEEEEEeCCC
Q 008939 409 YRFGSVGQDT 418 (548)
Q Consensus 409 ~~l~s~~~Dg 418 (548)
.+|.+++..-
T Consensus 294 fLLf~~sgsp 303 (445)
T KOG2139|consen 294 FLLFACSGSP 303 (445)
T ss_pred EEEEEEcCCc
Confidence 4455555433
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2.2e-12 Score=132.61 Aligned_cols=218 Identities=16% Similarity=0.219 Sum_probs=142.3
Q ss_pred CCCCceeEEeCCCCCEEEEec---CC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEE-EcCC--cEE
Q 008939 129 SSTSMTNTNFDGKGTYIIFNV---GD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIG-LNSG--DVY 201 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~---~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g-~~dg--~I~ 201 (548)
+...+...+|+|||+.|++.. ++ .+++|++.++..+.+ ...+......+|+|+ +..|+.. ..+| +|+
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l---~~~~~~~~~~~~SPD---G~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV---ASFPRHNGAPAFSPD---GSKLAFALSKTGSLNLY 270 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc---cCCCCCcCCeEECCC---CCEEEEEEcCCCCcEEE
Confidence 455778999999999998743 33 899999987542223 223344557899999 6667654 4455 488
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
+||+.+. .+..... +...+....|+|+++.++++...++...||.++..+..
T Consensus 271 ~~d~~tg------~~~~lt~-------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--------------- 322 (429)
T PRK03629 271 VMDLASG------QIRQVTD-------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--------------- 322 (429)
T ss_pred EEECCCC------CEEEccC-------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---------------
Confidence 8998752 1111111 23456789999999943344444555566644322111
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC---CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 358 (548)
...+..+........|+|||++|+....+ ..|.+||+.+++... +... .......|+|||+.|+.
T Consensus 323 ----------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 323 ----------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIY 390 (429)
T ss_pred ----------eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEE
Confidence 11111222345678899999999887654 358899998876442 2221 22346789999999999
Q ss_pred EeCCCe---EEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 359 GGEDDL---VQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 359 gs~dg~---I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
.+.++. +.+++++ ++....+.+|.+.+...+|+|
T Consensus 391 ~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 391 SSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCC
Confidence 887764 6777774 556667778888899899987
No 219
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=7.1e-12 Score=129.33 Aligned_cols=215 Identities=15% Similarity=0.080 Sum_probs=139.5
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC---CcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|++||.... ..+.+..+...+...+|+|+ +..|+..+.+ .+|++||+... +. .....
T Consensus 185 ~l~i~D~~g~---~~~~lt~~~~~v~~p~wSpD---g~~la~~s~~~~~~~l~~~dl~~g-----~~-~~l~~------- 245 (433)
T PRK04922 185 ALQVADSDGY---NPQTILRSAEPILSPAWSPD---GKKLAYVSFERGRSAIYVQDLATG-----QR-ELVAS------- 245 (433)
T ss_pred EEEEECCCCC---CceEeecCCCccccccCCCC---CCEEEEEecCCCCcEEEEEECCCC-----CE-EEecc-------
Confidence 6889998643 34455556678899999999 7778777643 36999998752 11 11000
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
......+++|+|+++.++++.+.+| .|++||+.... +..+..+.......+
T Consensus 246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~---------------------------~~~lt~~~~~~~~~~ 298 (433)
T PRK04922 246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ---------------------------LTRLTNHFGIDTEPT 298 (433)
T ss_pred CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC---------------------------eEECccCCCCccceE
Confidence 2333457899999995555666666 58888887521 111222223456789
Q ss_pred ECCCCCEEEEEEC-CCe--EEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC---eEEEEECCCceeEEecc
Q 008939 307 FSTDGTYLATVGR-DGY--LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD---LVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 307 ~sp~g~~l~s~~~-dg~--v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg---~I~vwd~~~~~~~~~~~ 380 (548)
|+|||+.|+..+. +|. |.++|+.+++... +..+......++|+|||++|+..+.++ .|.+||+.+++.. .+.
T Consensus 299 ~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt 376 (433)
T PRK04922 299 WAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT 376 (433)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC
Confidence 9999998887764 444 6667777665432 222233445789999999988765433 6999999887655 333
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC---CCeEEEEECCCC
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ---DTRLLLWDLEMD 428 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~---Dg~i~lwd~~~~ 428 (548)
+........|+| || ++|+..+. ...|.++|+..+
T Consensus 377 -~~~~~~~p~~sp-------dG------~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 377 -PGSLDESPSFAP-------NG------SMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred -CCCCCCCceECC-------CC------CEEEEEEecCCceEEEEEECCCC
Confidence 333455678999 98 55555554 346888888543
No 220
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.5e-13 Score=132.30 Aligned_cols=232 Identities=14% Similarity=0.171 Sum_probs=162.1
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEe-cCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIH-FSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~-~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
.....||.+-|.++.|+.+|.+|+++++| .+.|||.-. .++++.+. .|..+|.|+.|-|... ...+++|..|..|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~--~KllhsI~TgHtaNIFsvKFvP~tn-nriv~sgAgDk~i 119 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE--YKLLHSISTGHTANIFSVKFVPYTN-NRIVLSGAGDKLI 119 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchh--cceeeeeecccccceeEEeeeccCC-CeEEEeccCcceE
Confidence 44667999999999999999999999999 999999875 55777774 5888999999999864 6788999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
+++|+..... .+.. ............|..+|..|+-.|++++.|.++++||+|+-||++.............
T Consensus 120 ~lfdl~~~~~-~~~d-~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~------ 191 (758)
T KOG1310|consen 120 KLFDLDSSKE-GGMD-HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS------ 191 (758)
T ss_pred EEEecccccc-cccc-cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH------
Confidence 9999985210 0000 0000011112248889999999999988999999999999999986332221110000
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCC--------Ce----------EEEee-eec
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSK--------EQ----------LICGG-KSY 340 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~--------~~----------~~~~~-~~~ 340 (548)
.+..+...--...|+..+| +..+|++|+.|-..++||.+. +. ++..+ .+|
T Consensus 192 ----------~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h 261 (758)
T KOG1310|consen 192 ----------ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH 261 (758)
T ss_pred ----------HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc
Confidence 0000111113567899999 567899999999999999532 11 11111 111
Q ss_pred C--------Cc---eEEEEEccCCCEEEEEeCCCeEEEEECCCcee
Q 008939 341 Y--------GA---LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV 375 (548)
Q Consensus 341 ~--------~~---v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~ 375 (548)
. .. ++-+.|+|+|.-|++.-....|+++|+..++.
T Consensus 262 lkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 262 LKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred ccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 1 12 45568999998777777777999999987653
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=1.3e-11 Score=113.22 Aligned_cols=178 Identities=16% Similarity=0.264 Sum_probs=132.0
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceee-eeeeccCCcccC
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVG-AHHYNKDGSVNN 230 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~-~~~~~~~~~~~~ 230 (548)
.|.|||-.. .+++..+.|.. .|..+.+.++ .++.-..+.|++|...... +.+.. .... +.
T Consensus 76 kviIWDD~k--~~~i~el~f~~-~I~~V~l~r~------riVvvl~~~I~VytF~~n~----k~l~~~et~~------NP 136 (346)
T KOG2111|consen 76 KVIIWDDLK--ERCIIELSFNS-EIKAVKLRRD------RIVVVLENKIYVYTFPDNP----KLLHVIETRS------NP 136 (346)
T ss_pred eEEEEeccc--CcEEEEEEecc-ceeeEEEcCC------eEEEEecCeEEEEEcCCCh----hheeeeeccc------CC
Confidence 688999444 56899999764 8999999887 5556667799999887521 11111 1111 12
Q ss_pred cceEEEEEecCCCcEEEE-EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 231 SRCTSVTWVPGGDGAFVV-GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 231 ~~v~~l~~~p~~~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
..+.+++-..+.. +||. |..-|.|+|-|+.... .++-.....|...|.|++.+.
T Consensus 137 kGlC~~~~~~~k~-~LafPg~k~GqvQi~dL~~~~------------------------~~~p~~I~AH~s~Iacv~Ln~ 191 (346)
T KOG2111|consen 137 KGLCSLCPTSNKS-LLAFPGFKTGQVQIVDLASTK------------------------PNAPSIINAHDSDIACVALNL 191 (346)
T ss_pred CceEeecCCCCce-EEEcCCCccceEEEEEhhhcC------------------------cCCceEEEcccCceeEEEEcC
Confidence 2233333333333 4444 5567999999998621 123466788999999999999
Q ss_pred CCCEEEEEECCCe-EEEEeCCCCeEEEeeeec--CCceEEEEEccCCCEEEEEeCCCeEEEEECCCc
Q 008939 310 DGTYLATVGRDGY-LRVFDYSKEQLICGGKSY--YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR 373 (548)
Q Consensus 310 ~g~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~ 373 (548)
+|.++|+++..|+ |||||..+++.+..++.. ...|.|++|||+..+|++.++.|+|+|+.++..
T Consensus 192 ~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 192 QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999998 789999999999887643 347999999999999999999999999998763
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.6e-11 Score=126.24 Aligned_cols=220 Identities=14% Similarity=0.078 Sum_probs=139.0
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc---CCcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN---SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~---dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|++||.+... .+.+..+...+...+|+|+ |..|+..+. +..|++|++.... .+.+. .
T Consensus 180 ~l~~~d~dg~~---~~~lt~~~~~~~~p~wSPD---G~~la~~s~~~g~~~i~i~dl~~G~---~~~l~---~------- 240 (429)
T PRK03629 180 ELRVSDYDGYN---QFVVHRSPQPLMSPAWSPD---GSKLAYVTFESGRSALVIQTLANGA---VRQVA---S------- 240 (429)
T ss_pred eEEEEcCCCCC---CEEeecCCCceeeeEEcCC---CCEEEEEEecCCCcEEEEEECCCCC---eEEcc---C-------
Confidence 78999988643 2334446668899999999 667776543 3468999986511 11111 0
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
....+..++|+|||+.++++...+| .|++||+.... +..+..+...+....
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~---------------------------~~~lt~~~~~~~~~~ 293 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---------------------------IRQVTDGRSNNTEPT 293 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC---------------------------EEEccCCCCCcCceE
Confidence 1233456899999994444445555 48888886521 111111224567889
Q ss_pred ECCCCCEEEEEECC-Ce--EEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC---CeEEEEECCCceeEEecc
Q 008939 307 FSTDGTYLATVGRD-GY--LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED---DLVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 307 ~sp~g~~l~s~~~d-g~--v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d---g~I~vwd~~~~~~~~~~~ 380 (548)
|+|||+.|+..+.+ +. |.++|+.+++.. .+...........|+|||++|+..+.+ ..|.+||+++++... +.
T Consensus 294 wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt 371 (429)
T PRK03629 294 WFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LT 371 (429)
T ss_pred ECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eC
Confidence 99999988877754 44 555577666443 333333455678999999998876543 368899998876443 32
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCe---EEEEECCCCeEEeee
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR---LLLWDLEMDEIVVPL 434 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~---i~lwd~~~~~~~~~~ 434 (548)
.. .......|+| || .+|+..+.++. +.+|++. +.....+
T Consensus 372 ~~-~~~~~p~~Sp-------DG------~~i~~~s~~~~~~~l~~~~~~-G~~~~~l 413 (429)
T PRK03629 372 DT-FLDETPSIAP-------NG------TMVIYSSSQGMGSVLNLVSTD-GRFKARL 413 (429)
T ss_pred CC-CCCCCceECC-------CC------CEEEEEEcCCCceEEEEEECC-CCCeEEC
Confidence 11 2234677898 99 67877777653 7777874 3333444
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.3e-11 Score=113.31 Aligned_cols=201 Identities=16% Similarity=0.235 Sum_probs=128.7
Q ss_pred ceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 133 MTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
+..++|++.=..++++..| .|+|||-.. +.+..-..-...+++|++|.|.+. ..|++|... -|.+|........
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~kss--t~pt~Lks~sQrnvtclawRPlsa--selavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKLKSVSQRNVTCLAWRPLSA--SELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCC--CCCceecchhhcceeEEEeccCCc--ceeeeeecc-eeEEEEcCccccc
Confidence 4467887744344455555 999999876 223333333567999999999953 367777665 5889987652111
Q ss_pred ccccee--e--eeeeccCCcccCcceEEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 212 VGKKLV--G--AHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 212 ~~~~~~--~--~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
++... . .....+ .. ....|++|.|.+|+. .+++++ .|..|.|||.+++.....
T Consensus 176 -~r~~~~~s~~~~qvl~-~p-gh~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL------------------ 233 (445)
T KOG2139|consen 176 -NRNIRMMSTHHLQVLQ-DP-GHNPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPL------------------ 233 (445)
T ss_pred -ccccccccccchhhee-CC-CCceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcccc------------------
Confidence 11100 0 000111 11 237999999999998 777766 567899999987432111
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeE
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I 365 (548)
. ...-+.+.-+.||||+.+|+.+.-|+..++|+.... ..... .--.+.|...+|+|+|.+|+.... +.-
T Consensus 234 ------~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw-~lgsgrvqtacWspcGsfLLf~~s-gsp 303 (445)
T KOG2139|consen 234 ------I--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW-ILGSGRVQTACWSPCGSFLLFACS-GSP 303 (445)
T ss_pred ------c--ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce-eccCCceeeeeecCCCCEEEEEEc-CCc
Confidence 1 011277889999999999999999999999965433 22222 223458999999999997554332 233
Q ss_pred EEEEC
Q 008939 366 QVWSM 370 (548)
Q Consensus 366 ~vwd~ 370 (548)
++|.+
T Consensus 304 ~lysl 308 (445)
T KOG2139|consen 304 RLYSL 308 (445)
T ss_pred eEEEE
Confidence 44443
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.8e-11 Score=126.42 Aligned_cols=217 Identities=15% Similarity=0.114 Sum_probs=142.5
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc---CCcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN---SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~---dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|+++|.+.. ..+.+..+...+.+.+|+|+ +..|+..+. +..|++||+.... .+.+. .
T Consensus 183 ~l~~~d~dg~---~~~~lt~~~~~v~~p~wSpD---G~~lay~s~~~g~~~i~~~dl~~g~---~~~l~----------~ 243 (435)
T PRK05137 183 RLAIMDQDGA---NVRYLTDGSSLVLTPRFSPN---RQEITYMSYANGRPRVYLLDLETGQ---RELVG----------N 243 (435)
T ss_pred EEEEECCCCC---CcEEEecCCCCeEeeEECCC---CCEEEEEEecCCCCEEEEEECCCCc---EEEee----------c
Confidence 7888888653 44556667778999999999 667777654 3579999987621 01111 1
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGN--LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
+...+...+|+|+|+.++++.+.++. |++||+.... +..+..+........
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---------------------------~~~Lt~~~~~~~~~~ 296 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---------------------------TTRLTDSPAIDTSPS 296 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---------------------------eEEccCCCCccCcee
Confidence 34566788999999955566666665 6666766421 112222334456789
Q ss_pred ECCCCCEEEEEEC-CC--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC---CeEEEEECCCceeEEecc
Q 008939 307 FSTDGTYLATVGR-DG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED---DLVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 307 ~sp~g~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d---g~I~vwd~~~~~~~~~~~ 380 (548)
|+|||+.|+..+. +| .|.+||+..++... +..+.+.+....|+|||++|+....+ ..|.+||+..+.. ..+.
T Consensus 297 ~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt 374 (435)
T PRK05137 297 YSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT 374 (435)
T ss_pred EcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc
Confidence 9999999888764 33 68888887665433 33334556778999999998876543 3688899865543 3333
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC------CeEEEEECCCCeE
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD------TRLLLWDLEMDEI 430 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D------g~i~lwd~~~~~~ 430 (548)
....+..+.|+| || +.|+..+.+ ..|.++|+..+..
T Consensus 375 -~~~~~~~p~~sp-------DG------~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 375 -SGFLVEGPTWAP-------NG------RVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred -CCCCCCCCeECC-------CC------CEEEEEEccCCCCCcceEEEEECCCCce
Confidence 223467789999 98 455544432 3678888876544
No 225
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=5.2e-11 Score=118.95 Aligned_cols=317 Identities=15% Similarity=0.143 Sum_probs=188.2
Q ss_pred EEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeecc
Q 008939 146 IFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNK 224 (548)
Q Consensus 146 ~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 224 (548)
++..++ .|.|.|..+ .+.+..+.........+.|+|+ ++++++.+.||.|.++|+.+ .+++....
T Consensus 10 V~~~~~~~v~viD~~t--~~~~~~i~~~~~~h~~~~~s~D---gr~~yv~~rdg~vsviD~~~------~~~v~~i~--- 75 (369)
T PF02239_consen 10 VVERGSGSVAVIDGAT--NKVVARIPTGGAPHAGLKFSPD---GRYLYVANRDGTVSVIDLAT------GKVVATIK--- 75 (369)
T ss_dssp EEEGGGTEEEEEETTT---SEEEEEE-STTEEEEEE-TT----SSEEEEEETTSEEEEEETTS------SSEEEEEE---
T ss_pred EEecCCCEEEEEECCC--CeEEEEEcCCCCceeEEEecCC---CCEEEEEcCCCeEEEEECCc------ccEEEEEe---
Confidence 344444 999999988 4488888765433455788998 88999999999999999987 23443333
Q ss_pred CCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-------
Q 008939 225 DGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI------- 297 (548)
Q Consensus 225 ~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 297 (548)
......+++++++|+.++++...++.+.++|.++. ++++.+..
T Consensus 76 ----~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl--------------------------e~v~~I~~~~~~~~~ 125 (369)
T PF02239_consen 76 ----VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL--------------------------EPVKTIPTGGMPVDG 125 (369)
T ss_dssp -----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT----------------------------EEEEEE--EE-TTT
T ss_pred ----cCCCcceEEEcCCCCEEEEEecCCCceeEeccccc--------------------------cceeecccccccccc
Confidence 34567899999999944444557899999998762 12222211
Q ss_pred cCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCCCeEEE-eeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCce
Q 008939 298 CQGSINSIAFSTDGTYLATVGR-DGYLRVFDYSKEQLIC-GGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRK 374 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~~~~~~~~-~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~~ 374 (548)
....+.++..+|....++..-. .+.|.+.|+...+.+. .............|+|++++++++ ..++.|-++|.++++
T Consensus 126 ~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 126 PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence 1246778888888776655554 4888888987654332 222234567789999999987664 557799999999988
Q ss_pred eEEecc----CCCCCeEEEEEecC----CCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceec
Q 008939 375 VVAWGE----GHNSWVSGVAFDSY----WSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFS 446 (548)
Q Consensus 375 ~~~~~~----~h~~~V~~v~~~p~----~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 446 (548)
.+..+. .|...+..+- +|. |.... .+ ...++.-....+.+||....+.++.+........+..+
T Consensus 206 ~v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~-~~------~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~th 277 (369)
T PF02239_consen 206 LVALIDTGKKPHPGPGANFP-HPGFGPVWATSG-LG------YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTH 277 (369)
T ss_dssp EEEEEE-SSSBEETTEEEEE-ETTTEEEEEEEB-SS------SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--
T ss_pred EEEEeecccccccccccccc-CCCcceEEeecc-cc------ceecccccCCccccchhhcCeEEEEEECCCCcceeecC
Confidence 776553 3444554432 331 10000 11 11222222346678999999999999876555555566
Q ss_pred CCCCccccCCeeeecccCCCCceeecCCCCceEEeecC-CCCeeEEEEeCCe---EEEEECCC-eEEEEeCCCCC
Q 008939 447 TGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH-TEPLSGLIFTQES---VLTVCREG-HIKIWMRPGVA 516 (548)
Q Consensus 447 ~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h-~~~V~~l~fspd~---l~t~s~Dg-~I~iW~~~~~~ 516 (548)
|++...--+. ..+.....+.++|..+.+.+..+... ...+..+.|++|+ ++|.-.++ .|.++|-.+.+
T Consensus 278 P~s~~vwvd~--~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 278 PDSRYVWVDT--FLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp TT-SEEEEE---TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred CCCccEEeec--cCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 7663111110 11223567889999988777666532 2358899999985 55555444 89999987755
No 226
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.49 E-value=6.4e-12 Score=114.05 Aligned_cols=117 Identities=26% Similarity=0.495 Sum_probs=90.5
Q ss_pred CcceEEEEEecCCCcEEEE--EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 230 NSRCTSVTWVPGGDGAFVV--GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s--~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
.++|.+++|+|++. .|++ |..+..|.+||++. .++.. .+...++.+.|
T Consensus 59 ~~~I~~~~WsP~g~-~favi~g~~~~~v~lyd~~~---------------------------~~i~~--~~~~~~n~i~w 108 (194)
T PF08662_consen 59 EGPIHDVAWSPNGN-EFAVIYGSMPAKVTLYDVKG---------------------------KKIFS--FGTQPRNTISW 108 (194)
T ss_pred CCceEEEEECcCCC-EEEEEEccCCcccEEEcCcc---------------------------cEeEe--ecCCCceEEEE
Confidence 45799999999999 5544 44678999999862 11222 23467889999
Q ss_pred CCCCCEEEEEEC---CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC------CCeEEEEECCCceeEEe
Q 008939 308 STDGTYLATVGR---DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE------DDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 308 sp~g~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~------dg~I~vwd~~~~~~~~~ 378 (548)
+|+|++|++++. .|.|.+||.++.+.+.... | ..+..++|+|||++|+++.. |..++||+.. |+.+..
T Consensus 109 sP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 109 SPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 999999999874 3679999999888887765 3 34789999999999998864 7889999985 665544
Q ss_pred c
Q 008939 379 G 379 (548)
Q Consensus 379 ~ 379 (548)
.
T Consensus 186 ~ 186 (194)
T PF08662_consen 186 K 186 (194)
T ss_pred c
Confidence 3
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=6e-12 Score=123.56 Aligned_cols=254 Identities=15% Similarity=0.210 Sum_probs=174.4
Q ss_pred CCCCCCceeEEeCCCCCEEEEec-CC-eEEEEEccCCC--------CCCe------------------EEEecCC-----
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNV-GD-AIFISDLNSQD--------KDPI------------------KSIHFSN----- 173 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~-~d-~v~vwd~~~~~--------~~~i------------------~~~~~~~----- 173 (548)
-.+...-+.+..+|||+|+++.+ -+ .|++||+..-. .+.| +.+.||.
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 34566667899999999988754 45 99999997632 0111 1222221
Q ss_pred ------CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEE
Q 008939 174 ------SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 174 ------~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 247 (548)
.....++++.. ...|++++....|+-++|++ ++-+.. .......+++|..++... +|+
T Consensus 128 y~~RIP~~GRDm~y~~~---scDly~~gsg~evYRlNLEq-----GrfL~P-------~~~~~~~lN~v~in~~hg-Lla 191 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKP---SCDLYLVGSGSEVYRLNLEQ-----GRFLNP-------FETDSGELNVVSINEEHG-LLA 191 (703)
T ss_pred eeeecCcCCccccccCC---CccEEEeecCcceEEEEccc-----cccccc-------cccccccceeeeecCccc-eEE
Confidence 12233444444 33488888888999999987 333322 223568899999999988 999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd 327 (548)
+|..+|.|.+||.+....... +....... . .........|+++.|+.+|-.+++|+.+|.+.|||
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~-l~~~~~v~-----------s---~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD 256 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGT-LDAASSVN-----------S---HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD 256 (703)
T ss_pred ecccCceEEEecchhhhhhee-eecccccC-----------C---CccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence 999999999999986322111 00000000 0 00000114599999999999999999999999999
Q ss_pred CCCCeEEEe-eeecCCceEEEEEccC--CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCc
Q 008939 328 YSKEQLICG-GKSYYGALLCCAWSMD--GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 328 ~~~~~~~~~-~~~~~~~v~~l~~spd--g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
+++.+++.. -....-+|..+.|.+. ++.+++. +...++|||-.+++....++ ....+..+++-| ++
T Consensus 257 LRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p-------~s-- 325 (703)
T KOG2321|consen 257 LRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-PTSDLNDFCFVP-------GS-- 325 (703)
T ss_pred cccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-ccCCcCceeeec-------CC--
Confidence 998887654 2334558999999776 3445554 56789999999999998888 455599999998 66
Q ss_pred cceeEEEEEEeCCCeEEEEECC
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
-+++++-.+..+..|=+.
T Consensus 326 ----Gm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 326 ----GMFFTANESSKMHTYYIP 343 (703)
T ss_pred ----ceEEEecCCCcceeEEcc
Confidence 488888888877766554
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=6.9e-13 Score=129.26 Aligned_cols=208 Identities=17% Similarity=0.229 Sum_probs=148.0
Q ss_pred eeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee-eecCCceEEEEEcc--CCCEEEEEeCCCeEEEE
Q 008939 292 IARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG-KSYYGALLCCAWSM--DGKYILTGGEDDLVQVW 368 (548)
Q Consensus 292 ~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~l~~sp--dg~~l~sgs~dg~I~vw 368 (548)
.+.+.+|++.|+|++|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-| +.+++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 4567899999999999999999999999999999999888877665 57999999999998 44689999999999999
Q ss_pred ECCCc----------eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-
Q 008939 369 SMEDR----------KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG- 437 (548)
Q Consensus 369 d~~~~----------~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~- 437 (548)
|+... +....+..|...|..|+-.| ++. ..+.++++||+|+-+|++....-..-...
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p-------~~P-----htfwsasEDGtirQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAP-------NGP-----HTFWSASEDGTIRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCC-------CCC-----ceEEEecCCcceeeecccCCccCCcccccc
Confidence 99842 34455667999999999888 552 58999999999999999974321111100
Q ss_pred ----------CCCCCceecCCCCccccCCeeeecccCCCCceeecCCC-C------------c-----eEEe-ecCC---
Q 008939 438 ----------PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL-S------------P-----LVAH-RVHT--- 485 (548)
Q Consensus 438 ----------~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~-~------------~-----~~~~-~~h~--- 485 (548)
-...++.+++. ....+.+|..++-.+++|.+.. + | +.-+ .+|.
T Consensus 191 ~~l~ny~~~lielk~ltisp~-----rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~ 265 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPS-----RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNS 265 (758)
T ss_pred HHHHHhchhhheeeeeeecCC-----CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCc
Confidence 01122333333 2455678888888888883211 1 0 1111 1222
Q ss_pred --------CCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 486 --------EPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 486 --------~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
..++-+.|+|++ |+..-.-..|.++|+...+
T Consensus 266 ~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 266 QGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred ccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 125678899984 4433344578999987655
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=5.6e-12 Score=123.79 Aligned_cols=266 Identities=15% Similarity=0.186 Sum_probs=183.9
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCe---eEeeecC------
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI---ARWHICQ------ 299 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~------ 299 (548)
+....+.|..+|||+.++++|..--.|++||+..- .+...-..-.+...|.+....+++...+ +.+..|.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL-SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL-SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccc-eeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 67888999999999988888999999999999751 1111111112223343333333322111 1111221
Q ss_pred -----CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce
Q 008939 300 -----GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK 374 (548)
Q Consensus 300 -----~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~ 374 (548)
..-..++++.-..-|+.++....|.-++++.|+.+..+....+.+++|..++...+|++|+.+|.|..||.++..
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 223345555433335555556679999999999998888888999999999999999999999999999999887
Q ss_pred eEEeccC------CCC-----CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC--CCCC
Q 008939 375 VVAWGEG------HNS-----WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG--PLGG 441 (548)
Q Consensus 375 ~~~~~~~------h~~-----~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~--~~~~ 441 (548)
.+..+.. |.. .|+++.|+- || ..++.|..+|.+.|||+++.+.+..-.+. -++.
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d-------~g------L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~ 275 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRD-------DG------LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIK 275 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecC-------Cc------eeEEeeccCCcEEEEEcccCCceeecccCCcccee
Confidence 6665542 322 499999986 78 88999999999999999998887655442 2333
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
.+.|.... +....+......+++||-.++++...+..- ..++.+++-|+. +++|-++..+-.+=++.
T Consensus 276 ~l~~~~~~-----~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 276 KLDWQDTD-----QQNKVVSMDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred eecccccC-----CCceEEecchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 33332221 111122223456889999999998888754 459999999973 78888888887777664
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=3e-11 Score=124.34 Aligned_cols=222 Identities=20% Similarity=0.174 Sum_probs=137.1
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC---CcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|.++|.... ....+..+...+.+.+|+|+ ++.|+..+.+ ..|++||+... +. .....
T Consensus 177 ~L~~~D~dG~---~~~~l~~~~~~v~~p~wSPD---G~~la~~s~~~~~~~I~~~dl~~g-----~~-~~l~~------- 237 (427)
T PRK02889 177 QLQISDADGQ---NAQSALSSPEPIISPAWSPD---GTKLAYVSFESKKPVVYVHDLATG-----RR-RVVAN------- 237 (427)
T ss_pred EEEEECCCCC---CceEeccCCCCcccceEcCC---CCEEEEEEccCCCcEEEEEECCCC-----CE-EEeec-------
Confidence 6778887542 33444456678889999999 7778776643 35999998762 11 11111
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
....+...+|+|++..++++.+.+|...||.++..+.. ...+..+.+......|+
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-------------------------~~~lt~~~~~~~~~~wS 292 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-------------------------LRRLTQSSGIDTEPFFS 292 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-------------------------cEECCCCCCCCcCeEEc
Confidence 23345688999999945556778888777776542211 11222223445667899
Q ss_pred CCCCEEEEEEC-CCeEEEEeC--CCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC---eEEEEECCCceeEEeccCC
Q 008939 309 TDGTYLATVGR-DGYLRVFDY--SKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD---LVQVWSMEDRKVVAWGEGH 382 (548)
Q Consensus 309 p~g~~l~s~~~-dg~v~vwd~--~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg---~I~vwd~~~~~~~~~~~~h 382 (548)
|||+.|+..+. ++...+|.+ ..++... +..........+|+|||++|+..+.++ .|.+||+.+++......
T Consensus 293 pDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-- 369 (427)
T PRK02889 293 PDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-- 369 (427)
T ss_pred CCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--
Confidence 99998887664 456666654 4444322 211223344678999999998776554 69999998876543322
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC---eEEEEECCCCeEEeee
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT---RLLLWDLEMDEIVVPL 434 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg---~i~lwd~~~~~~~~~~ 434 (548)
........|+| || +.|+..+.++ .+.+.++. +.....+
T Consensus 370 ~~~~~~p~~sp-------dg------~~l~~~~~~~g~~~l~~~~~~-g~~~~~l 410 (427)
T PRK02889 370 TTRDESPSFAP-------NG------RYILYATQQGGRSVLAAVSSD-GRIKQRL 410 (427)
T ss_pred CCCccCceECC-------CC------CEEEEEEecCCCEEEEEEECC-CCceEEe
Confidence 23446788999 98 5665555433 35555653 4434333
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.47 E-value=1.9e-11 Score=112.44 Aligned_cols=253 Identities=16% Similarity=0.156 Sum_probs=160.1
Q ss_pred CCceeEEeCCCCCEEEEec-CC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCC-ceEEEEEcCCcEEEEEeee
Q 008939 131 TSMTNTNFDGKGTYIIFNV-GD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDG-HDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~-~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~-~~l~~g~~dg~I~iwdl~~ 207 (548)
..|..+.|..|.-+++.+. .| .|.+|++..++ -..++...++......|+|+ | ..|.+..-+-.|.+|.+.+
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--w~ckIdeg~agls~~~WSPd---grhiL~tseF~lriTVWSL~t 123 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--WYCKIDEGQAGLSSISWSPD---GRHILLTSEFDLRITVWSLNT 123 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecce--eEEEeccCCCcceeeeECCC---cceEeeeecceeEEEEEEecc
Confidence 3455678888877776654 45 99999999854 67788888889999999999 5 4566666688899999987
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcE---EE-----E------EcCCCCCCCCCcccc
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNL---YV-----Y------EKSKDGAGDSSFPVI 273 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v---~v-----w------d~~~~~~~~~~~~~~ 273 (548)
+ +..-... .+..+..++|+|+++ +.+.+++-... .+ | ++++-... .+
T Consensus 124 ~------~~~~~~~-------pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dlt--gi--- 184 (447)
T KOG4497|consen 124 Q------KGYLLPH-------PKTNVKGYAFHPDGQ-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLT--GI--- 184 (447)
T ss_pred c------eeEEecc-------cccCceeEEECCCCc-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCccccc--Cc---
Confidence 3 1111111 234456677777776 44444432111 11 1 11110000 00
Q ss_pred cccceeeeecCCCCCCCCeeEeee---------c-CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe-------
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHI---------C-QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG------- 336 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~---------h-~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~------- 336 (548)
....+.+-+..|+. | .-.+..++|+|.+++|++|+.|+.+||.+--+.+....
T Consensus 185 ----------eWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~ 254 (447)
T KOG4497|consen 185 ----------EWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSY 254 (447)
T ss_pred ----------eECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhc
Confidence 00111222222221 1 24688899999999999999999999865322211100
Q ss_pred -----------------------------------------------------ee------ecCCceEEEEEccCCCEEE
Q 008939 337 -----------------------------------------------------GK------SYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 337 -----------------------------------------------------~~------~~~~~v~~l~~spdg~~l~ 357 (548)
++ ...-.+--++|++|..+++
T Consensus 255 ~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~a 334 (447)
T KOG4497|consen 255 HDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAA 334 (447)
T ss_pred cCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEe
Confidence 00 0112356689999999888
Q ss_pred EEeCC--CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEE
Q 008939 358 TGGED--DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 358 sgs~d--g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~ 431 (548)
+-.+. +.+-+||++..+....+. ...+|....|+| .. .+|+.+.....+.+|...-..++
T Consensus 335 Trnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-------~~------prL~vctg~srLY~W~psg~~~V 396 (447)
T KOG4497|consen 335 TRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-------GR------PRLVVCTGKSRLYFWAPSGPRVV 396 (447)
T ss_pred eecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-------CC------ceEEEEcCCceEEEEcCCCceEE
Confidence 86543 579999999877666555 677899999999 54 56777777778999987664443
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.6e-11 Score=126.78 Aligned_cols=217 Identities=18% Similarity=0.234 Sum_probs=138.8
Q ss_pred CCCCCceeEEeCCCCCEEEEecC---C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEE-EEEcCC--cE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVG---D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLL-IGLNSG--DV 200 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~---d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~-~g~~dg--~I 200 (548)
.+...+...+|+|||+.|++... + .|++||+.++.. ..+...+....+.+|+|+ +..|+ +...+| +|
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~---~~l~~~~g~~~~~~~SpD---G~~l~~~~s~~g~~~I 274 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR---ELVASFRGINGAPSFSPD---GRRLALTLSRDGNPEI 274 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE---EEeccCCCCccCceECCC---CCEEEEEEeCCCCceE
Confidence 34567888999999999998652 3 799999987542 233323445567899999 66565 445555 59
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCcccccccce
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN--LYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
++||+... .+.... .+.......+|+|++..++++...+|. |+++|+....
T Consensus 275 y~~d~~~g------~~~~lt-------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-------------- 327 (433)
T PRK04922 275 YVMDLGSR------QLTRLT-------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-------------- 327 (433)
T ss_pred EEEECCCC------CeEECc-------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--------------
Confidence 99998752 111111 123345678999999944444445565 5555554311
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC---eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCE
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG---YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~ 355 (548)
...+..+.......+|+|||++|+..+.++ .|.+||+.+++.. .+. +........|+|||+.
T Consensus 328 -------------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~ 392 (433)
T PRK04922 328 -------------AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSM 392 (433)
T ss_pred -------------eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCE
Confidence 111111113344689999999998876443 6999999887755 332 2223456799999998
Q ss_pred EEEEeCC---CeEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 356 ILTGGED---DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 356 l~sgs~d---g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
|+..+.+ ..|.++++. +.....+..+.+.+...+|+|
T Consensus 393 i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 393 VLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 8776653 468888885 445556655667777778876
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.7e-11 Score=126.19 Aligned_cols=221 Identities=18% Similarity=0.226 Sum_probs=141.3
Q ss_pred CCCCCceeEEeCCCCCEEEEecC---C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEE-EEEcCCcEEE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVG---D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLL-IGLNSGDVYS 202 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~---d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~-~g~~dg~I~i 202 (548)
.+...+...+|+|||+.|++... + .|++||+.++. . ..+...+....+.+|+|+ +..|+ +...+|...|
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~--~-~~l~~~~g~~~~~~~SPD---G~~la~~~~~~g~~~I 266 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR--R-RVVANFKGSNSAPAWSPD---GRTLAVALSRDGNSQI 266 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC--E-EEeecCCCCccceEECCC---CCEEEEEEccCCCceE
Confidence 45667888999999999988653 2 69999998754 2 233323345678899999 66666 4567777666
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|.++.. +....... .+........|+||++.+++++..+|...||.++..+..
T Consensus 267 y~~d~~----~~~~~~lt-------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~---------------- 319 (427)
T PRK02889 267 YTVNAD----GSGLRRLT-------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA---------------- 319 (427)
T ss_pred EEEECC----CCCcEECC-------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc----------------
Confidence 655431 11111100 123345667899999944445555677777776532211
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC---eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG---YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
...+..+.......+|+|||++|+..+.++ .|.+||+.+++...... . .......|+|||+.|+..
T Consensus 320 ---------~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 320 ---------AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYA 388 (427)
T ss_pred ---------eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEE
Confidence 011111112234578999999999877654 69999998876543222 2 234678999999988877
Q ss_pred eCCC---eEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 360 GEDD---LVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 360 s~dg---~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
+.++ .+.+.++ +++....+..+.+.+...+|+|
T Consensus 389 ~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 389 TQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred EecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCC
Confidence 7544 3556666 4555666666777788888887
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=2.8e-13 Score=129.61 Aligned_cols=231 Identities=12% Similarity=0.149 Sum_probs=180.4
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
.-.++.+.|..+|+.++.++.+ .|--+|+.+.. ....+.. ...|..+.|-.+ .. +++......++|||-..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~--L~~Ei~v-~Etv~Dv~~LHn---eq-~~AVAQK~y~yvYD~~G- 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK--LHFEINV-METVRDVTFLHN---EQ-FFAVAQKKYVYVYDNNG- 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccce--eeeeeeh-hhhhhhhhhhcc---hH-HHHhhhhceEEEecCCC-
Confidence 3456789999999999998887 99999998844 5555553 346777777765 33 44445666899998543
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
..+.+.. ....|..+.|.|..- +|++++..|.+..-|+..+ .
T Consensus 201 -----tElHClk--------~~~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~G-k----------------------- 242 (545)
T KOG1272|consen 201 -----TELHCLK--------RHIRVARLEFLPYHF-LLVAASEAGFLKYQDVSTG-K----------------------- 242 (545)
T ss_pred -----cEEeehh--------hcCchhhhcccchhh-eeeecccCCceEEEeechh-h-----------------------
Confidence 3333322 356889999999987 8999999999999999873 2
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 368 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vw 368 (548)
.+..+....+.+..|+-+|-...+-+|...|+|.+|.....+.+..+..|.++|.+|++.++|.+++|.+.|..++||
T Consensus 243 --lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIW 320 (545)
T KOG1272|consen 243 --LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIW 320 (545)
T ss_pred --hhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEe
Confidence 233333334778888889988899999999999999999999888888999999999999999999999999999999
Q ss_pred ECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 008939 369 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424 (548)
Q Consensus 369 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd 424 (548)
|++....+.++.. .-+...++|+- -| +++++....|.||.
T Consensus 321 DlR~~~ql~t~~t-p~~a~~ls~Sq-------kg--------lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 321 DLRNFYQLHTYRT-PHPASNLSLSQ-------KG--------LLALSYGDHVQIWK 360 (545)
T ss_pred eeccccccceeec-CCCcccccccc-------cc--------ceeeecCCeeeeeh
Confidence 9998876666553 45667788876 44 66777778899994
No 235
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=8.3e-12 Score=130.80 Aligned_cols=264 Identities=17% Similarity=0.246 Sum_probs=178.8
Q ss_pred CEEEEecCCeEEEEEccCCCCCCeEEE------ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccce
Q 008939 143 TYIIFNVGDAIFISDLNSQDKDPIKSI------HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKL 216 (548)
Q Consensus 143 ~~l~~~~~d~v~vwd~~~~~~~~i~~~------~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~ 216 (548)
++++++.+-.+.+||+..+. .+..+ ..|-....-.. .+.+++.+..-+.++.-+...+ ....
T Consensus 18 ~~llag~gp~i~~yd~~s~~--li~~~~~~~~~~~H~~e~~~~l------~~~~~v~~~~~~~v~~~~~~~~---~~~~- 85 (967)
T KOG0974|consen 18 DYLLAGSGPEILVYDLSSGC--LIRHLIQSKILEVHRGEGKVKL------LSGKIVTCAKSDEVYVKEASNQ---IIER- 85 (967)
T ss_pred ceeeecCCCceEEeeCCchh--Hhhhhhhhccccccccccccee------ccceEEEEEeecceeecchhhh---hhhh-
Confidence 78988888899999998754 22222 11200000001 1456677777666655443321 1111
Q ss_pred eeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee
Q 008939 217 VGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH 296 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (548)
....+....+.-+.. .++....+..+.+||... +......+... ...+
T Consensus 86 ------------~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~-~~~~~~i~~~e-----------------r~~l- 133 (967)
T KOG0974|consen 86 ------------FSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKN-SSVLSKIQSDE-----------------RCTL- 133 (967)
T ss_pred ------------ccccccccchhhhcc-eEEEEEcCceEEEEeccc-CceehhcCCCc-----------------eEEE-
Confidence 233334344444445 788888889999999864 22211111000 0000
Q ss_pred ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeE
Q 008939 297 ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV 376 (548)
Q Consensus 297 ~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~ 376 (548)
....-+-++++.-++++|+.-+.|.+|+....+.-..+.+|.+.|..+.|+-||.++++.++|..+++|++++.+..
T Consensus 134 ---~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 134 ---YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL 210 (967)
T ss_pred ---EeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc
Confidence 11223445677779999999999999999733333357899999999999999999999999999999999998776
Q ss_pred E-eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccC
Q 008939 377 A-WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWD 455 (548)
Q Consensus 377 ~-~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 455 (548)
. ..-+|...|+.+.|+| ..+++++.|.+.++|+....++ .
T Consensus 211 ~~~~fgHsaRvw~~~~~~---------------n~i~t~gedctcrvW~~~~~~l-~----------------------- 251 (967)
T KOG0974|consen 211 GCTGFGHSARVWACCFLP---------------NRIITVGEDCTCRVWGVNGTQL-E----------------------- 251 (967)
T ss_pred CcccccccceeEEEEecc---------------ceeEEeccceEEEEEeccccee-h-----------------------
Confidence 5 6678999999999998 5799999999999996543222 1
Q ss_pred CeeeecccCCCCceeecCCCCceEEeecC-CCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 456 NVCPVGTLQPAPSMRDVPKLSPLVAHRVH-TEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 456 ~~~~~g~~~~~~~~~d~~~~~~~~~~~~h-~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
.+.+| ...|..++..++. ++|++.|+.+++|++.+..
T Consensus 252 ------------------------~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 252 ------------------------VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ------------------------hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 12234 3468888888863 8999999999999976644
No 236
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.42 E-value=1.8e-12 Score=130.38 Aligned_cols=297 Identities=11% Similarity=0.172 Sum_probs=206.9
Q ss_pred eeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccc
Q 008939 134 TNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVG 213 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~ 213 (548)
..+..+|.|+-++.++...+++-|+...-..+..-.+..+-.+-.+.|+|..+ ..+-++......-.+|++... ..
T Consensus 28 ~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a-~~~wiVsts~qkaiiwnlA~s---s~ 103 (1081)
T KOG0309|consen 28 NAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPA-KPYWIVSTSNQKAIIWNLAKS---SS 103 (1081)
T ss_pred cceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCC-CceeEEecCcchhhhhhhhcC---Cc
Confidence 35777899999999888899999998765455555555666888889999865 345556666666778988752 12
Q ss_pred cceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCee
Q 008939 214 KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIA 293 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (548)
+.+. |... .|...|+++.|+|..+.++++++.|-.+..||++.. ..|+.
T Consensus 104 ~aIe----f~lh--ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp-------------------------~~p~y 152 (1081)
T KOG0309|consen 104 NAIE----FVLH--GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP-------------------------HRPFY 152 (1081)
T ss_pred cceE----EEEe--cCccceeccccCCCCCcceeeccccccceeeeccCC-------------------------Cccee
Confidence 2222 2122 489999999999999889999999999999999973 34555
Q ss_pred EeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccCC-CEEEEEeCCCeEEEEEC
Q 008939 294 RWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSM 370 (548)
Q Consensus 294 ~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~ 370 (548)
.|..-...-..++|+- ++..| +.+....|++||++.+ ..++.+++|...|+.++|..-- ..+.+++.|++|+.||.
T Consensus 153 s~~~w~s~asqVkwnyk~p~vl-asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 153 STSSWRSAASQVKWNYKDPNVL-ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred eeecccccCceeeecccCcchh-hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 5555456677899987 55444 4556778999999876 4678889998889888886532 35788999999999999
Q ss_pred CCceeE-EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCC
Q 008939 371 EDRKVV-AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGS 449 (548)
Q Consensus 371 ~~~~~~-~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (548)
+..... .....-..+|..-.|.|.| +| +.+.-.-.+..+.+.+.+.....
T Consensus 232 ~kSt~e~~~~vtt~~piw~~r~~Pfg-----~g------~~~mp~~G~n~v~~~~c~n~d~e------------------ 282 (1081)
T KOG0309|consen 232 SKSTTESKRTVTTNFPIWRGRYLPFG-----EG------YCIMPMVGGNMVPQLRCENSDLE------------------ 282 (1081)
T ss_pred cccccccceeccccCcceeccccccC-----ce------eEeccccCCeeeeeccccchhhh------------------
Confidence 764321 2222355677777787732 33 33322222234444444332211
Q ss_pred CccccCCeeeecccCCCCceeec-CCCCceEEeecCCCCeeEEEEeC-----------C-eEEEEECCCeEEEEeCCCC
Q 008939 450 QSAHWDNVCPVGTLQPAPSMRDV-PKLSPLVAHRVHTEPLSGLIFTQ-----------E-SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 450 ~~~~~d~~~~~g~~~~~~~~~d~-~~~~~~~~~~~h~~~V~~l~fsp-----------d-~l~t~s~Dg~I~iW~~~~~ 515 (548)
|++ ....|+..+.||.+.|....|.. | .|+|=+.|..+|+|-+...
T Consensus 283 --------------------~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 283 --------------------WNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred --------------------hccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 211 23468899999999998777753 1 2999999999999987654
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=5.7e-11 Score=122.78 Aligned_cols=215 Identities=16% Similarity=0.174 Sum_probs=137.7
Q ss_pred CCCCCceeEEeCCCCCEEEEec---CC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEE-EEEcCCc--E
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNV---GD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLL-IGLNSGD--V 200 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~---~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~-~g~~dg~--I 200 (548)
.|...+...+|+|||+.|++.+ ++ .|++||+.++. ...+...+..+...+|+|+ +..|+ +...+|. |
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---~~~l~~~~g~~~~~~~SPD---G~~la~~~~~~g~~~I 272 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---RELVGNFPGMTFAPRFSPD---GRKVVMSLSQGGNTDI 272 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---EEEeecCCCcccCcEECCC---CCEEEEEEecCCCceE
Confidence 5667889999999999998864 23 89999998754 2334444556778899999 66565 4455554 7
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe-CCC--cEEEEEcCCCCCCCCCcccccccc
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-ADG--NLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-~dg--~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
++||++.. .+.... .+........|+|+++ .|+..+ .+| .|++||+... .
T Consensus 273 y~~d~~~~------~~~~Lt-------~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~g~-~------------ 325 (435)
T PRK05137 273 YTMDLRSG------TTTRLT-------DSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNADGS-N------------ 325 (435)
T ss_pred EEEECCCC------ceEEcc-------CCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECCCC-C------------
Confidence 77787652 111111 1334456789999999 555444 444 5777776531 1
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC---CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK 354 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~ 354 (548)
...+..+.+.+....|+|||++|+....+ ..|.+||+..+... .+. ....+....|+|||+
T Consensus 326 --------------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~ 389 (435)
T PRK05137 326 --------------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGR 389 (435)
T ss_pred --------------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCC
Confidence 11222223456678899999999887654 36888898655432 222 223467789999999
Q ss_pred EEEEEeCC------CeEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 355 YILTGGED------DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 355 ~l~sgs~d------g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
.|+..+.+ ..|.++|+..+.. ..+. ....+...+|+|
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence 88765442 2578888876544 3444 344466667766
No 238
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.40 E-value=8.7e-10 Score=110.19 Aligned_cols=254 Identities=20% Similarity=0.256 Sum_probs=157.0
Q ss_pred ceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcEEEEEeeeccc
Q 008939 133 MTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSVSLRQQLQ 210 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iwdl~~~~~ 210 (548)
...+.|++||+++.+.+.| .|.++|+.+.+ .+.++.. ...+.+++++++ |++++++. ..+.|.++|.++.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~~-G~~~~~i~~s~D---G~~~~v~n~~~~~v~v~D~~tl-- 110 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIKV-GGNPRGIAVSPD---GKYVYVANYEPGTVSVIDAETL-- 110 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE--SSEEEEEEE--T---TTEEEEEEEETTEEEEEETTT---
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEec-CCCcceEEEcCC---CCEEEEEecCCCceeEeccccc--
Confidence 3457899999998887777 99999999854 8888885 447899999999 77888775 6899999998761
Q ss_pred ccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 211 DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA-DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
++.+.+ ......... ...++..|..+|... .+++.-. .+.|.+.|......
T Consensus 111 e~v~~I-~~~~~~~~~--~~~Rv~aIv~s~~~~-~fVv~lkd~~~I~vVdy~d~~~------------------------ 162 (369)
T PF02239_consen 111 EPVKTI-PTGGMPVDG--PESRVAAIVASPGRP-EFVVNLKDTGEIWVVDYSDPKN------------------------ 162 (369)
T ss_dssp -EEEEE-E--EE-TTT--S---EEEEEE-SSSS-EEEEEETTTTEEEEEETTTSSC------------------------
T ss_pred cceeec-ccccccccc--cCCCceeEEecCCCC-EEEEEEccCCeEEEEEeccccc------------------------
Confidence 111111 111111111 356788898899888 5666555 47888888765211
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCCCeEEEeee------------------------------
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSKEQLICGGK------------------------------ 338 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~~~~~~~~~------------------------------ 338 (548)
+....-.-........|+|+++|++.+ ..+..|-++|.++++++..+.
T Consensus 163 -~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 163 -LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp -EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred -cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 010111112456778899998887664 455678888887766543321
Q ss_pred -------------------------ecCCceEEEEEccCCCEEEEE----eCCCeEEEEECCCceeEEeccC-CCCCeEE
Q 008939 339 -------------------------SYYGALLCCAWSMDGKYILTG----GEDDLVQVWSMEDRKVVAWGEG-HNSWVSG 388 (548)
Q Consensus 339 -------------------------~~~~~v~~l~~spdg~~l~sg----s~dg~I~vwd~~~~~~~~~~~~-h~~~V~~ 388 (548)
...++ .-+..+|+++++.+. .+.+.|.++|.++.+.+..+.. -...+..
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h 320 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVH 320 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEec
Confidence 11112 446779999999988 4558999999999988877752 2235889
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCC-eEEEEECCCCeEEeeeec
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVGQDT-RLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg-~i~lwd~~~~~~~~~~~~ 436 (548)
+.|++ ||. ...+|.-.++ .|.+||..+.+++..+..
T Consensus 321 ~ef~~-------dG~-----~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 321 MEFNP-------DGK-----EVWVSVWDGNGAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp EEE-T-------TSS-----EEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred cEECC-------CCC-----EEEEEEecCCCEEEEEECCCcEEEEEEEe
Confidence 99999 983 3445554444 899999999999888764
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.36 E-value=4.8e-09 Score=104.89 Aligned_cols=264 Identities=17% Similarity=0.261 Sum_probs=165.2
Q ss_pred CCCceeEEeCCCCCEEEEecC----C-eEEEEEccCC--CCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcEE
Q 008939 130 STSMTNTNFDGKGTYIIFNVG----D-AIFISDLNSQ--DKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVY 201 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~----d-~v~vwd~~~~--~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~ 201 (548)
...+..+++++++++|.+... + .|..|++... ....+.........+..++++|+ +.+|+++. .+|.|.
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~---g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPD---GRFLYVANYGGGSVS 112 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTT---SSEEEEEETTTTEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecC---CCEEEEEEccCCeEE
Confidence 445567999999999888644 2 8888888763 33456666556678889999999 77788776 488999
Q ss_pred EEEeeecccccccceeeeeee---ccC-CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 202 SVSLRQQLQDVGKKLVGAHHY---NKD-GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~---~~~-~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
++++.... .. ........+ .+. ..-......++.|+|+++.++++--....|++|+++........
T Consensus 113 v~~l~~~g-~l-~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-------- 182 (345)
T PF10282_consen 113 VFPLDDDG-SL-GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-------- 182 (345)
T ss_dssp EEEECTTS-EE-EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE--------
T ss_pred EEEccCCc-cc-ceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE--------
Confidence 99998620 01 111111110 000 01124567899999999944444445568999999764321100
Q ss_pred eeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCC--CCeE--EEeeee----c--CCceE
Q 008939 278 QFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLATVG-RDGYLRVFDYS--KEQL--ICGGKS----Y--YGALL 345 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~--~~~~--~~~~~~----~--~~~v~ 345 (548)
...+.. .....+.++|+|+++++++.. .++.|.+|++. ++.. +..+.. . .....
T Consensus 183 --------------~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 183 --------------VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp --------------EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred --------------eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 011111 125678999999999887665 57789999998 4433 222221 1 12577
Q ss_pred EEEEccCCCEEEEEeC-CCeEEEEECCC--c--eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCe
Q 008939 346 CCAWSMDGKYILTGGE-DDLVQVWSMED--R--KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTR 419 (548)
Q Consensus 346 ~l~~spdg~~l~sgs~-dg~I~vwd~~~--~--~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~ 419 (548)
.|+++|||++|++... ++.|.+|+++. + +.+..+......-+.++++| +| ++|+++. .++.
T Consensus 249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~-------~g------~~l~Va~~~s~~ 315 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP-------DG------RYLYVANQDSNT 315 (345)
T ss_dssp EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T-------TS------SEEEEEETTTTE
T ss_pred eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC-------CC------CEEEEEecCCCe
Confidence 8999999999887664 67899999942 3 33444443455678999999 88 4555554 6789
Q ss_pred EEEEEC--CCCeEEee
Q 008939 420 LLLWDL--EMDEIVVP 433 (548)
Q Consensus 420 i~lwd~--~~~~~~~~ 433 (548)
|.+|++ ++|.+...
T Consensus 316 v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 316 VSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred EEEEEEeCCCCcEEEe
Confidence 999976 46665443
No 240
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=6.5e-12 Score=121.09 Aligned_cols=271 Identities=17% Similarity=0.201 Sum_probs=188.9
Q ss_pred ccCCCCCCceeEEeCCC--CCEEEEecCC-eEEEEEccCCC-CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 125 GASSSSTSMTNTNFDGK--GTYIIFNVGD-AIFISDLNSQD-KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~--g~~l~~~~~d-~v~vwd~~~~~-~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
.-++|...|....|-|. ..-|+.++.| .+++-.+.... .+.+..+.-|...+.-++..|.. ...|++++.|+.+
T Consensus 180 f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~s--p~~f~S~geD~~v 257 (559)
T KOG1334|consen 180 FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDS--PKPFLSCGEDAVV 257 (559)
T ss_pred cccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCC--CCcccccccccce
Confidence 34688999998888774 3456666666 88888765422 23345555577888888888885 4479999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.-+|+++.. +..++.+... ... ..-..+.|+..|-..+.|++++.|-.+++||.+.-......- . ...
T Consensus 258 ~~~Dlr~~~--pa~~~~cr~~--~~~--~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~-~---~~~-- 325 (559)
T KOG1334|consen 258 FHIDLRQDV--PAEKFVCREA--DEK--ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG-V---LDK-- 325 (559)
T ss_pred eeeeeccCC--ccceeeeecc--CCc--cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc-h---hhh--
Confidence 999998732 2222221111 000 123678999999988899999999999999987522110000 0 000
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC--C----------eEEEe-eeecCC--ceE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK--E----------QLICG-GKSYYG--ALL 345 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~--~----------~~~~~-~~~~~~--~v~ 345 (548)
..|-+......-.|+|++|+.++..|++...|-.|.+|+-.. | ..+.. +++|.. .|.
T Consensus 326 --------f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVK 397 (559)
T KOG1334|consen 326 --------FCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVK 397 (559)
T ss_pred --------cCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccc
Confidence 011111111225799999998887777788888899995432 2 22222 677764 355
Q ss_pred EEE-EccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 008939 346 CCA-WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424 (548)
Q Consensus 346 ~l~-~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd 424 (548)
++- |-|..+++++|+..|.|.||+-.+++.+..+++...-|+||.-+|+ - ..|++.|-|..|+||-
T Consensus 398 gVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~-------~------PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 398 GVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH-------L------PVLASSGIDHDVKIWT 464 (559)
T ss_pred eeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC-------C------chhhccCCccceeeec
Confidence 554 5678899999999999999999999999999987779999999983 2 5899999999999998
Q ss_pred CCCCeE
Q 008939 425 LEMDEI 430 (548)
Q Consensus 425 ~~~~~~ 430 (548)
-.+.+.
T Consensus 465 P~~~er 470 (559)
T KOG1334|consen 465 PLTAER 470 (559)
T ss_pred CCcccc
Confidence 755443
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.35 E-value=7.8e-10 Score=114.15 Aligned_cols=213 Identities=16% Similarity=0.168 Sum_probs=135.7
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC---CcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|+++|.... ..+.+..+...+...+|+|+ +..|+..... ..|++||+.+. +.. ....
T Consensus 171 ~l~~~d~~g~---~~~~l~~~~~~~~~p~~Spd---g~~la~~~~~~~~~~i~v~d~~~g-----~~~-~~~~------- 231 (417)
T TIGR02800 171 ELQVADYDGA---NPQTITRSREPILSPAWSPD---GQKLAYVSFESGKPEIYVQDLATG-----QRE-KVAS------- 231 (417)
T ss_pred eEEEEcCCCC---CCEEeecCCCceecccCCCC---CCEEEEEEcCCCCcEEEEEECCCC-----CEE-Eeec-------
Confidence 6888888643 33444445556888899999 7778877654 36999998762 111 1011
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
+...+.+++|+|+++.++++...++ .|++||+.... ...+..+........
T Consensus 232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~---------------------------~~~l~~~~~~~~~~~ 284 (417)
T TIGR02800 232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ---------------------------LTRLTNGPGIDTEPS 284 (417)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC---------------------------EEECCCCCCCCCCEE
Confidence 2345667899999984555555555 48888876521 111111223344678
Q ss_pred ECCCCCEEEEEECC-C--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC---eEEEEECCCceeEEecc
Q 008939 307 FSTDGTYLATVGRD-G--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD---LVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 307 ~sp~g~~l~s~~~d-g--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg---~I~vwd~~~~~~~~~~~ 380 (548)
|+||++.|+..+.. + .|.++|+.+++.. .+..+...+....|+|+|++|+....++ .|.+||+.++.... +.
T Consensus 285 ~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~ 362 (417)
T TIGR02800 285 WSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LT 362 (417)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-cc
Confidence 99999988876643 3 5778888776643 3333455677889999999999888776 89999998765432 32
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC---eEEEEECC
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT---RLLLWDLE 426 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg---~i~lwd~~ 426 (548)
.. .......|+| || ..|+....++ .+.+.+..
T Consensus 363 ~~-~~~~~p~~sp-------dg------~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 363 DT-GLDESPSFAP-------NG------RMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CC-CCCCCceECC-------CC------CEEEEEEeCCCcEEEEEEECC
Confidence 22 2234568898 88 4565555443 45555543
No 242
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.3e-09 Score=111.75 Aligned_cols=231 Identities=18% Similarity=0.239 Sum_probs=135.0
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC--cEEEEEeeecccccccceeeeeeeccCCccc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG--DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVN 229 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 229 (548)
.|++.|.+... .+.+.........-+|+|+++.-.++++...+| +|++.++... ..+.+.. .
T Consensus 166 ~l~~~d~dG~~---~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g---~~~~lt~----------~ 229 (428)
T PRK01029 166 ELWSVDYDGQN---LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP---AGKKILA----------L 229 (428)
T ss_pred eEEEEcCCCCC---ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC---CceEeec----------C
Confidence 57777777644 233443555667779999943211333555554 4777787652 1122211 1
Q ss_pred CcceEEEEEecCCCcEEEEEeCCC--cEEE--EEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADG--NLYV--YEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg--~v~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
.......+|+|||+.++++...+| .+++ |++..... ..+......+.+.....
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~-----------------------g~~~~lt~~~~~~~~~p 286 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI-----------------------GKPRRLLNEAFGTQGNP 286 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC-----------------------CcceEeecCCCCCcCCe
Confidence 334456899999984555554444 3333 55543110 01111111112334568
Q ss_pred EECCCCCEEEEEE-CCCeEEEE--eCCC-CeEEEeeeecCCceEEEEEccCCCEEEEEeCC---CeEEEEECCCceeEEe
Q 008939 306 AFSTDGTYLATVG-RDGYLRVF--DYSK-EQLICGGKSYYGALLCCAWSMDGKYILTGGED---DLVQVWSMEDRKVVAW 378 (548)
Q Consensus 306 ~~sp~g~~l~s~~-~dg~v~vw--d~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d---g~I~vwd~~~~~~~~~ 378 (548)
+|+|||+.|+..+ .+|...+| ++.. +.....+..+...+....|+|||+.|+..+.+ ..|.+||+.+++....
T Consensus 287 ~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L 366 (428)
T PRK01029 287 SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL 366 (428)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc
Confidence 9999999888766 46655555 4432 22233343344567788999999988876543 4799999998876543
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEE-EeC--CCeEEEEECCCCeEEeeee
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS-VGQ--DTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s-~~~--Dg~i~lwd~~~~~~~~~~~ 435 (548)
.. ....+....|+| || +.|+. ... +..|.+||+..++......
T Consensus 367 t~-~~~~~~~p~wSp-------DG------~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 367 TT-SPENKESPSWAI-------DS------LHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred cC-CCCCccceEECC-------CC------CEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 33 344567889999 98 45543 332 4678999998877654443
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.31 E-value=3.6e-10 Score=102.71 Aligned_cols=210 Identities=15% Similarity=0.187 Sum_probs=145.7
Q ss_pred eEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCc-eEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCccc
Q 008939 152 AIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGH-DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVN 229 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~-~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 229 (548)
.+.+|++.....-++..+.. ..+.+..+.|.--..++. .|+.+...|+|.++...... .. ....-.....+.
T Consensus 47 kl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~----ss--~~L~~ls~~ki~ 120 (339)
T KOG0280|consen 47 KLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDE----SS--VHLRGLSSKKIS 120 (339)
T ss_pred ceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccce----ee--eeecccchhhhh
Confidence 56777777644333333322 234556666665444444 67888889999998765411 00 001101111112
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
.....++.|++.+. .++++..+|.+.+-+.... ..+.++.|+.|+-.+.-..|+.
T Consensus 121 ~~~~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~------------------------~le~vq~wk~He~E~Wta~f~~ 175 (339)
T KOG0280|consen 121 VVEALSLDISTSGT-KIFVSDSRGSISGVYETEM------------------------VLEKVQTWKVHEFEAWTAKFSD 175 (339)
T ss_pred heeeeEEEeeccCc-eEEEEcCCCcEEEEeccee------------------------eeeecccccccceeeeeeeccc
Confidence 33467889999998 7899999999985544321 1234678999999999999986
Q ss_pred -CCCEEEEEECCCeEEEEeCC-CCeEEEe-eeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCC-ceeEEeccCCCC
Q 008939 310 -DGTYLATVGRDGYLRVFDYS-KEQLICG-GKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMED-RKVVAWGEGHNS 384 (548)
Q Consensus 310 -~g~~l~s~~~dg~v~vwd~~-~~~~~~~-~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~-~~~~~~~~~h~~ 384 (548)
+.+++++|+.|+.+..||++ .++.+.. .+.|...|.+|.-+| .+.+|++|+.|..|++||.++ ++++..-. -.+
T Consensus 176 ~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~G 254 (339)
T KOG0280|consen 176 KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGG 254 (339)
T ss_pred CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-ccc
Confidence 56799999999999999998 4455544 567888999998876 466899999999999999995 66665544 458
Q ss_pred CeEEEEEec
Q 008939 385 WVSGVAFDS 393 (548)
Q Consensus 385 ~V~~v~~~p 393 (548)
.|+.+.++|
T Consensus 255 GVWRi~~~p 263 (339)
T KOG0280|consen 255 GVWRIKHHP 263 (339)
T ss_pred ceEEEEecc
Confidence 899999998
No 244
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.29 E-value=2.3e-08 Score=96.68 Aligned_cols=207 Identities=17% Similarity=0.280 Sum_probs=147.1
Q ss_pred eCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecC-C-----CCc------eEE-EecCCCCCCceEEEEEcCCcEEEEE
Q 008939 138 FDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFS-N-----SNP------VCH-AFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 138 ~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~-~-----~~~------~~~-~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
.+.||+.|++..+..|++||-++. .+.++... + ... ..+ .|++. +|.+++..+ .|+..+.+
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td---~lekldI~lpl~rk~k~~k~~~pskyledfa~~--~Gd~ia~VS-RGkaFi~~ 347 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETD---SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV--NGDYIALVS-RGKAFIMR 347 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcC---cceeeecCCccccccccccccCHHHhhhhhccC--CCcEEEEEe-cCcEEEEC
Confidence 357899999998889999998854 34444332 1 111 111 24443 244555444 46776665
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC-cEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG-NLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
... ...++. .+...|.-..+.-+.+ -++.|..|| .+-|||.+..
T Consensus 348 ~~~------~~~iqv--------~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~-------------------- 392 (668)
T COG4946 348 PWD------GYSIQV--------GKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGG-------------------- 392 (668)
T ss_pred CCC------CeeEEc--------CCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCc--------------------
Confidence 433 111111 2567788888888887 789999999 8999999862
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
.+.++...-+.|.++..+++|++++.+.....|.+.|+.++.....-+...+-|+.++|+|+++++|-+--+|
T Consensus 393 -------e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 393 -------EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred -------eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcc
Confidence 2333344448899999999999999999999999999999988777777788999999999999999876665
Q ss_pred ----eEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 364 ----LVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 364 ----~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
.|+++|+..++....-. ..+.=.+-+|+|
T Consensus 466 y~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~ 498 (668)
T COG4946 466 YYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP 498 (668)
T ss_pred eeeeeEEEEecCCCeEEEecC-CcccccCcccCC
Confidence 69999999887665433 333344667888
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=7.6e-09 Score=102.12 Aligned_cols=317 Identities=12% Similarity=0.192 Sum_probs=201.9
Q ss_pred ceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEE-----EcC-----CcEEE
Q 008939 133 MTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIG-----LNS-----GDVYS 202 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g-----~~d-----g~I~i 202 (548)
....+++++|++++++.++.++|++..... .+.... .....++.|+|. +.+|.+- ..+ -.+.+
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~--~~lt~~--~~~~~~L~fSP~---g~yL~T~e~~~i~~~~~~~~pn~~v 109 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLK--VVLCVE--LKKTYDLLFSPK---GNYLLTWEPWAIYGPKNASNPNVLV 109 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCc--EEEEec--cceeeeeeeccc---ccccccccccccccCCCCCCCceee
Confidence 567899999999999999999999988743 333333 238899999998 5555432 112 23678
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|++++.. ....+. .. ...+ ++..|++|.. |++--..+.+++|++.....
T Consensus 110 ~~vet~~---~~s~~q-----~k--~Q~~--W~~qfs~dEs--l~arlv~nev~f~~~~~f~~----------------- 158 (566)
T KOG2315|consen 110 YNVETGV---QRSQIQ-----KK--MQNG--WVPQFSIDES--LAARLVSNEVQFYDLGSFKT----------------- 158 (566)
T ss_pred eeeccce---ehhhee-----hh--hhcC--cccccccchh--hhhhhhcceEEEEecCCccc-----------------
Confidence 8877611 111000 00 0122 6889999886 55545567899999875211
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCC--CEEEE-----EECCCeEEEEeCCCCeEEEe--eee-cCCceEEEEEccC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDG--TYLAT-----VGRDGYLRVFDYSKEQLICG--GKS-YYGALLCCAWSMD 352 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g--~~l~s-----~~~dg~v~vwd~~~~~~~~~--~~~-~~~~v~~l~~spd 352 (548)
+.+ ..|...|..+.+||.+ ..+|+ .+.-..|+||.+.....-.. .+. ....=..+.|.+-
T Consensus 159 --------~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~ 228 (566)
T KOG2315|consen 159 --------IQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKL 228 (566)
T ss_pred --------eee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccC
Confidence 111 2335779999999863 34443 24456899998863221111 011 1112234678877
Q ss_pred CCE-EEEEe--C---------CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeE
Q 008939 353 GKY-ILTGG--E---------DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRL 420 (548)
Q Consensus 353 g~~-l~sgs--~---------dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i 420 (548)
|.- |+..+ - +..+++.+++...++..+. -.++|.++.|+| +|.+ --++-|-.-.++
T Consensus 229 gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~-------s~~E----F~VvyGfMPAkv 296 (566)
T KOG2315|consen 229 GTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSP-------SGRE----FAVVYGFMPAKV 296 (566)
T ss_pred CceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECC-------CCCE----EEEEEecccceE
Confidence 762 22222 1 2368888888445555554 689999999999 8721 233444467899
Q ss_pred EEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--E
Q 008939 421 LLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--V 498 (548)
Q Consensus 421 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l 498 (548)
.|+|++. ..+..+.. .+.+.+.|++.+..... .-.|.+.+.+.+||+...+.+..+..-. -+-.+|+||+ +
T Consensus 297 tifnlr~-~~v~df~e-gpRN~~~fnp~g~ii~l---AGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~f 369 (566)
T KOG2315|consen 297 TIFNLRG-KPVFDFPE-GPRNTAFFNPHGNIILL---AGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYF 369 (566)
T ss_pred EEEcCCC-CEeEeCCC-CCccceEECCCCCEEEE---eecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEE
Confidence 9999874 44444443 56677888888732211 1356778999999999998888877543 3558899985 6
Q ss_pred EEEE------CCCeEEEEeCCCCC
Q 008939 499 LTVC------REGHIKIWMRPGVA 516 (548)
Q Consensus 499 ~t~s------~Dg~I~iW~~~~~~ 516 (548)
+|++ .|..++||++.+..
T Consensus 370 lTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 370 LTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred EEEeccccEEecCCeEEEEecCce
Confidence 6665 47899999987765
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.28 E-value=9.4e-11 Score=123.04 Aligned_cols=190 Identities=21% Similarity=0.288 Sum_probs=142.9
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
...++.+..++.+.+||.... ..+...+. ....--....-+-++++.- ++++|+.-+.|.+|+...+
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~-----~~~~~i~~---~er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~~~d---- 165 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNS-----SVLSKIQS---DERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKPHED---- 165 (967)
T ss_pred cceEEEEEcCceEEEEecccC-----ceehhcCC---CceEEEEeEEEEeccCcEE-EEEeccccccEEEEecccc----
Confidence 557889999999999997652 11110000 0000001111122233333 7889999999999998731
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEE-eeeecCCceEE
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC-GGKSYYGALLC 346 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~~v~~ 346 (548)
..|+ .+.+|++.|..+.|+.||.++++++.|..+|+|++++.+... ..-+|...+..
T Consensus 166 ---------------------n~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 166 ---------------------NKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred ---------------------CCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 1222 678899999999999999999999999999999999988765 67789999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCC-CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 347 CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN-SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 347 l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
+.|.|+ .++++++|-+.++|+.+ +..+..+.+|. ..|..++..+ +. ..++|++.|+.+++||+
T Consensus 224 ~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~-------~~------~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 224 CCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPI-------GV------IIKVTGGNDSTLKLWDL 287 (967)
T ss_pred EEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcC-------Cc------eEEEeeccCcchhhhhh
Confidence 999998 89999999999999765 44455777775 5789999987 55 68999999999999998
Q ss_pred CCC
Q 008939 426 EMD 428 (548)
Q Consensus 426 ~~~ 428 (548)
...
T Consensus 288 ~~r 290 (967)
T KOG0974|consen 288 NGR 290 (967)
T ss_pred hcc
Confidence 643
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=4.2e-09 Score=108.82 Aligned_cols=220 Identities=12% Similarity=0.113 Sum_probs=130.0
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc-CC--cEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN-SG--DVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~-dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|.++|..... .+.+...+..+.+..|+|+ +..|+..+. ++ +|++||+... +. .....
T Consensus 199 ~l~i~d~dG~~---~~~l~~~~~~~~~p~wSPD---G~~La~~s~~~g~~~L~~~dl~tg-----~~-~~lt~------- 259 (448)
T PRK04792 199 QLMIADYDGYN---EQMLLRSPEPLMSPAWSPD---GRKLAYVSFENRKAEIFVQDIYTQ-----VR-EKVTS------- 259 (448)
T ss_pred EEEEEeCCCCC---ceEeecCCCcccCceECCC---CCEEEEEEecCCCcEEEEEECCCC-----Ce-EEecC-------
Confidence 67777876533 2344456678889999999 667776654 33 5888888652 11 10000
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGN--LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
.........|+|+++.++++...+|. |+++|+.... +..+..+.......+
T Consensus 260 ~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---------------------------~~~lt~~~~~~~~p~ 312 (448)
T PRK04792 260 FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA---------------------------LTRITRHRAIDTEPS 312 (448)
T ss_pred CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---------------------------eEECccCCCCccceE
Confidence 12233468999999955556677776 6666765421 111122224456789
Q ss_pred ECCCCCEEEEEEC-CC--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC-C--eEEEEECCCceeEEecc
Q 008939 307 FSTDGTYLATVGR-DG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED-D--LVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 307 ~sp~g~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d-g--~I~vwd~~~~~~~~~~~ 380 (548)
|+||++.|+..+. ++ .|.++|+.+++.... ..........+|+|||++|+..+.+ + .|.++|+.+++... +.
T Consensus 313 wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt 390 (448)
T PRK04792 313 WHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT 390 (448)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc
Confidence 9999998877654 33 466678877764332 1122233457899999988776553 3 46667888776433 32
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEE-EeCCC--eEEEEECCCCeEEeee
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS-VGQDT--RLLLWDLEMDEIVVPL 434 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s-~~~Dg--~i~lwd~~~~~~~~~~ 434 (548)
.. .......|+| || +.|+. ...++ .|.++|.. +.....+
T Consensus 391 ~~-~~d~~ps~sp-------dG------~~I~~~~~~~g~~~l~~~~~~-G~~~~~l 432 (448)
T PRK04792 391 ST-RLDESPSVAP-------NG------TMVIYSTTYQGKQVLAAVSID-GRFKARL 432 (448)
T ss_pred CC-CCCCCceECC-------CC------CEEEEEEecCCceEEEEEECC-CCceEEC
Confidence 22 1222457888 88 44444 43444 36777764 4444444
No 248
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.28 E-value=4e-10 Score=111.77 Aligned_cols=196 Identities=20% Similarity=0.238 Sum_probs=148.5
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEe------c-------------CCCcEEEE
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWV------P-------------GGDGAFVV 248 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~------p-------------~~~~~l~s 248 (548)
..+++....||.+++||.... ++... |.+... -.+.+++..|. | .+...++-
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~------~~~~e--~~p~~~-~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKN------QLQQE--FAPIAS-LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred hheEeecCCCCeEEEEEccCc------eeeee--eccchh-ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence 568899999999999998762 11111 111110 24566666663 1 12226778
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeC
Q 008939 249 GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDY 328 (548)
Q Consensus 249 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~ 328 (548)
|...|.|.+|++..++ ....+ .-..|.+.|+++.++.+-..|.+++.|+.+..|+.
T Consensus 76 gt~~g~v~~ys~~~g~-it~~~-----------------------st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~ 131 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGE-ITAKL-----------------------STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILE 131 (541)
T ss_pred ecCCccEEEEEecCCe-EEEEE-----------------------ecCCCCCcceeeecccccCceEecCCceeEEEEec
Confidence 8899999999987521 11111 11346789999999998889999999999999999
Q ss_pred CCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCC--CCccc
Q 008939 329 SKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSD--GTAET 406 (548)
Q Consensus 329 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~d--g~~~~ 406 (548)
...+.++..+.....+.+++.+|||+.|++++ +.|++||+++++.+..|.||.++|+++.|-- + | -.
T Consensus 132 ~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~-------~~~g--~~ 200 (541)
T KOG4547|consen 132 KEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT-------LIDG--II 200 (541)
T ss_pred ccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEE-------eccc--cc
Confidence 99999999998888999999999999999987 6899999999999999999999999999976 4 2 11
Q ss_pred eeEEEEEEeCCCeEEEEECCC
Q 008939 407 VMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 407 ~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
..+.|.+...+.-+.+|-++.
T Consensus 201 G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 201 GKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cceeeeccccccceeEEEEEc
Confidence 125666666777888887654
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=3.6e-09 Score=109.52 Aligned_cols=215 Identities=13% Similarity=0.103 Sum_probs=130.8
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC---CcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|.++|.+... ...+..+...+....|+|+ +..|+..+.+ ..|++||+.+.. .+.+. .
T Consensus 180 ~l~~~d~~g~~---~~~l~~~~~~~~~p~wSpD---G~~la~~s~~~~~~~l~~~~l~~g~---~~~l~---~------- 240 (430)
T PRK00178 180 TLQRSDYDGAR---AVTLLQSREPILSPRWSPD---GKRIAYVSFEQKRPRIFVQNLDTGR---REQIT---N------- 240 (430)
T ss_pred EEEEECCCCCC---ceEEecCCCceeeeeECCC---CCEEEEEEcCCCCCEEEEEECCCCC---EEEcc---C-------
Confidence 57788887533 3444445667888999999 6677665543 358999987521 01111 0
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
....+....|+|+++.++++...+| .|++||+.... ...+..+........
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---------------------------~~~lt~~~~~~~~~~ 293 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---------------------------LSRVTNHPAIDTEPF 293 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---------------------------eEEcccCCCCcCCeE
Confidence 1233456899999984444565565 57778877521 111111223455678
Q ss_pred ECCCCCEEEEEEC-CC--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC-C--eEEEEECCCceeEEecc
Q 008939 307 FSTDGTYLATVGR-DG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED-D--LVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 307 ~sp~g~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d-g--~I~vwd~~~~~~~~~~~ 380 (548)
|+|||+.|+..+. ++ .|.++|+.+++..... ..........|+|||++|+....+ + .|.+||+.+++... +.
T Consensus 294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt 371 (430)
T PRK00178 294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT 371 (430)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc
Confidence 9999998877664 33 5777788777643221 112233457899999998876643 2 58889998876433 22
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-C--CeEEEEECCCC
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ-D--TRLLLWDLEMD 428 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~-D--g~i~lwd~~~~ 428 (548)
+........|+| || ++++..+. + ..|.++++...
T Consensus 372 -~~~~~~~p~~sp-------dg------~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 372 -DTSLDESPSVAP-------NG------TMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred -CCCCCCCceECC-------CC------CEEEEEEecCCceEEEEEECCCC
Confidence 122223568998 88 45554443 3 34677777543
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.2e-09 Score=112.95 Aligned_cols=215 Identities=15% Similarity=0.214 Sum_probs=130.8
Q ss_pred CCCceeEEeCCCCCEEEEecC---C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEE-EEcCCc--EEE
Q 008939 130 STSMTNTNFDGKGTYIIFNVG---D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLI-GLNSGD--VYS 202 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~---d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~-g~~dg~--I~i 202 (548)
...+....|+|||+.|++... . .|++||+.++.. ..+...+......+|+|+ +..|+. ...+|. |++
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~---~~lt~~~g~~~~~~wSPD---G~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR---EKVTSFPGINGAPRFSPD---GKKLALVLSKDGQPEIYV 290 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe---EEecCCCCCcCCeeECCC---CCEEEEEEeCCCCeEEEE
Confidence 456678999999999998542 2 699999987542 223222334457899999 665654 556665 777
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCcccccccceee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN--LYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
+|+.+. ...... .+........|+|+++.++++...++. |+++|+... .
T Consensus 291 ~dl~tg------~~~~lt-------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g-~--------------- 341 (448)
T PRK04792 291 VDIATK------ALTRIT-------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG-K--------------- 341 (448)
T ss_pred EECCCC------CeEECc-------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-C---------------
Confidence 777651 111111 123345678999999955555555555 444555431 1
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-C--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-G--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-g--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
...+..+.......+|+|||++|+..+.+ + .|.++|+.+++... +... .......|+|||+.|+
T Consensus 342 -----------~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~ 408 (448)
T PRK04792 342 -----------VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVI 408 (448)
T ss_pred -----------EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEE
Confidence 11111111223356899999998877653 3 45667887776432 2211 1223457999999877
Q ss_pred EEeCC-C--eEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 358 TGGED-D--LVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 358 sgs~d-g--~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
....+ + .+.+++. +++....+..+.+.+...+|+|
T Consensus 409 ~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 409 YSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 65543 3 3777787 4666666766667777788877
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.24 E-value=4.2e-08 Score=98.12 Aligned_cols=283 Identities=17% Similarity=0.239 Sum_probs=168.1
Q ss_pred CeEEEEEccCCC--CCCeEEEecCCCCceEEEecCCCCCCceEEEEEc----CCcEEEEEeeecccccccceeeeeeecc
Q 008939 151 DAIFISDLNSQD--KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN----SGDVYSVSLRQQLQDVGKKLVGAHHYNK 224 (548)
Q Consensus 151 d~v~vwd~~~~~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~----dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 224 (548)
+.|++|+++... ...+..+ .....+..++++|+ +.+|++... +|.|..|++.... ..+.......
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~---~~~LY~~~e~~~~~g~v~~~~i~~~~----g~L~~~~~~~- 83 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPD---GRRLYVVNEGSGDSGGVSSYRIDPDT----GTLTLLNSVP- 83 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TT---SSEEEEEETTSSTTTEEEEEEEETTT----TEEEEEEEEE-
T ss_pred CcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeC---CCEEEEEEccccCCCCEEEEEECCCc----ceeEEeeeec-
Confidence 488888884432 1222332 25568899999998 778888877 4689999887520 1111111111
Q ss_pred CCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEE
Q 008939 225 DGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINS 304 (548)
Q Consensus 225 ~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (548)
........++++|++..++++...+|.|.++++...+............ ... .++. +.-....++
T Consensus 84 ---~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~-----g~g----~~~~---rq~~~h~H~ 148 (345)
T PF10282_consen 84 ---SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE-----GSG----PNPD---RQEGPHPHQ 148 (345)
T ss_dssp ---ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESE-----EEE----SSTT---TTSSTCEEE
T ss_pred ---cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccC-----CCC----Cccc---cccccccee
Confidence 1244556899999999444444568999999998754322211100000 000 0000 001245789
Q ss_pred EEECCCCCEEEEEEC-CCeEEEEeCCCCe--EEE--eee-ecCCceEEEEEccCCCEEEEEeC-CCeEEEEECC--Cce-
Q 008939 305 IAFSTDGTYLATVGR-DGYLRVFDYSKEQ--LIC--GGK-SYYGALLCCAWSMDGKYILTGGE-DDLVQVWSME--DRK- 374 (548)
Q Consensus 305 ~~~sp~g~~l~s~~~-dg~v~vwd~~~~~--~~~--~~~-~~~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~--~~~- 374 (548)
+.|+|++++|++... ...|.+|++.... +.. .+. .....-+.++|+|+++++++..+ ++.|.++++. ++.
T Consensus 149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 999999998887653 3579999997654 322 222 23356788999999998876654 7889999998 332
Q ss_pred -eEEecc----C--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC--CeEEeeeecCCCCCCcee
Q 008939 375 -VVAWGE----G--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM--DEIVVPLRRGPLGGSPTF 445 (548)
Q Consensus 375 -~~~~~~----~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~--~~~~~~~~~~~~~~~~~~ 445 (548)
.+..+. + .......|+++| ||+ .++++...+..|.+|++.. +++. .+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~isp-------dg~-----~lyvsnr~~~sI~vf~~d~~~g~l~-~~~~--------- 286 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISP-------DGR-----FLYVSNRGSNSISVFDLDPATGTLT-LVQT--------- 286 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-T-------TSS-----EEEEEECTTTEEEEEEECTTTTTEE-EEEE---------
T ss_pred eEEEEeeeccccccccCCceeEEEec-------CCC-----EEEEEeccCCEEEEEEEecCCCceE-EEEE---------
Confidence 222222 1 123678999999 983 4566666788999999942 3322 1111
Q ss_pred cCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEE-CCCeEEEEeCCC
Q 008939 446 STGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVC-REGHIKIWMRPG 514 (548)
Q Consensus 446 ~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s-~Dg~I~iW~~~~ 514 (548)
........+.++|+|++ |+.+. .++.|.+|++..
T Consensus 287 -----------------------------------~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 287 -----------------------------------VPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp -----------------------------------EEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred -----------------------------------EeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 11123346899999974 55554 778999998753
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.23 E-value=3.8e-09 Score=109.03 Aligned_cols=182 Identities=19% Similarity=0.178 Sum_probs=118.6
Q ss_pred cCCCeEEEEECCCCCEEEEEECC---CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE-EeCCC--eEEEEECC
Q 008939 298 CQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT-GGEDD--LVQVWSME 371 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s-gs~dg--~I~vwd~~ 371 (548)
+...+...+|+|||++|+.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+.|+. .+.++ .|.+||+.
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 34568889999999999987654 479999999886543 2335556778999999997764 44443 58899998
Q ss_pred CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-CC--eEEEEECCCCeEEeeeecCCCCCCceecCC
Q 008939 372 DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ-DT--RLLLWDLEMDEIVVPLRRGPLGGSPTFSTG 448 (548)
Q Consensus 372 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~-Dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 448 (548)
+++.. .+..+........|+| || ..|+..+. ++ .|.+||+.+++... +.
T Consensus 267 ~~~~~-~l~~~~~~~~~~~~s~-------dg------~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~------------- 318 (417)
T TIGR02800 267 GKQLT-RLTNGPGIDTEPSWSP-------DG------KSIAFTSDRGGSPQIYMMDADGGEVRR-LT------------- 318 (417)
T ss_pred CCCEE-ECCCCCCCCCCEEECC-------CC------CEEEEEECCCCCceEEEEECCCCCEEE-ee-------------
Confidence 77544 3444555556778998 88 56655543 33 57777776554321 11
Q ss_pred CCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCC---eEEEEeCCCCCccccCCC
Q 008939 449 SQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREG---HIKIWMRPGVAESQSSSS 523 (548)
Q Consensus 449 ~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg---~I~iW~~~~~~~~~~~~~ 523 (548)
.+...+..+.|+|++ |+.++.++ .|.+||+.++........
T Consensus 319 ----------------------------------~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 364 (417)
T TIGR02800 319 ----------------------------------FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT 364 (417)
T ss_pred ----------------------------------cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC
Confidence 122335567788864 66666665 788888776543322211
Q ss_pred --CcEEEecCCCCceEeeecc
Q 008939 524 --ETVLSTSSKDKPLLSSKVV 542 (548)
Q Consensus 524 --~~v~~~s~d~~~l~s~~~~ 542 (548)
..-.+++||+++|+.....
T Consensus 365 ~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 365 GLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred CCCCCceECCCCCEEEEEEeC
Confidence 1222788999888776554
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=3.3e-09 Score=109.76 Aligned_cols=217 Identities=15% Similarity=0.199 Sum_probs=133.2
Q ss_pred CCCCCceeEEeCCCCCEEEEecC---C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEE-EEcCC--cE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVG---D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLI-GLNSG--DV 200 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~---d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~-g~~dg--~I 200 (548)
.+...+....|+|||+.|++.+. . .|++||+.++..+ .+...+......+|+|+ +..|+. ...+| .|
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~---~l~~~~g~~~~~~~SpD---G~~la~~~~~~g~~~I 269 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE---QITNFEGLNGAPAWSPD---GSKLAFVLSKDGNPEI 269 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE---EccCCCCCcCCeEECCC---CCEEEEEEccCCCceE
Confidence 34566788899999999988542 2 7999999875422 23223334557899998 666664 44455 58
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCcccccccce
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN--LYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
++||+.+. ....... +........|+|+++.++++...+|. |+++|+.... .
T Consensus 270 y~~d~~~~------~~~~lt~-------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~------------ 323 (430)
T PRK00178 270 YVMDLASR------QLSRVTN-------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-A------------ 323 (430)
T ss_pred EEEECCCC------CeEEccc-------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-E------------
Confidence 88888752 1111110 23345667899999855555545554 6666655321 1
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-C--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCE
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-G--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-g--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~ 355 (548)
..+...........|+|||++|+....+ + .|.+||+.+++...... ........|+|||+.
T Consensus 324 --------------~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~ 387 (430)
T PRK00178 324 --------------ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTM 387 (430)
T ss_pred --------------EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCE
Confidence 0000001123346899999999887653 2 58889998876533222 122235689999998
Q ss_pred EEEEeCC---CeEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 356 ILTGGED---DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 356 l~sgs~d---g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
|+..+.+ ..|.++++. +.....+..+.+.+...+|+|
T Consensus 388 i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 388 LIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred EEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 8776643 357777775 344445555566677777876
No 254
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=1.1e-10 Score=128.18 Aligned_cols=193 Identities=19% Similarity=0.314 Sum_probs=152.6
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN 254 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~ 254 (548)
++.|+.=+|. ..+.++|+.||.|++|.... +..+..... ....+|+.+.|+.+|+ .+..+..||.
T Consensus 2210 ~v~r~~sHp~---~~~Yltgs~dgsv~~~~w~~-----~~~v~~~rt------~g~s~vtr~~f~~qGn-k~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2210 NVRRMTSHPS---DPYYLTGSQDGSVRMFEWGH-----GQQVVCFRT------AGNSRVTRSRFNHQGN-KFGIVDGDGD 2274 (2439)
T ss_pred ceeeecCCCC---CceEEecCCCceEEEEeccC-----CCeEEEeec------cCcchhhhhhhcccCC-ceeeeccCCc
Confidence 4455555555 44689999999999998665 334433211 1348899999999999 8999999999
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE---CCCeEEEEeCCCC
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG---RDGYLRVFDYSKE 331 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~---~dg~v~vwd~~~~ 331 (548)
+.+|.... ++...|+.|....+.+.|-. ..+++++ .++.+.+||..-.
T Consensus 2275 l~l~q~~p---------------------------k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2275 LSLWQASP---------------------------KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred eeecccCC---------------------------cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC
Confidence 99999873 56788899999999999865 5677764 4688999997532
Q ss_pred ---eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCcccee
Q 008939 332 ---QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 332 ---~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
.++. ..|.+.++++++-|..++|++|+.+|.|++||++..+.++.++. ++. .
T Consensus 2326 ~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~~-------~------- 2380 (2439)
T KOG1064|consen 2326 PMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LDT-------R------- 2380 (2439)
T ss_pred cccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hhh-------h-------
Confidence 2344 78999999999999999999999999999999999988887774 222 2
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.+|++++..|.|+||++..-..+..+..
T Consensus 2381 ~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2381 EYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred heeeccCcccceEEEEccccchhhcCch
Confidence 3799999999999999998877766654
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=6.4e-09 Score=106.67 Aligned_cols=223 Identities=15% Similarity=0.163 Sum_probs=132.9
Q ss_pred CCceeEEeCCCCCE--EEE-ec--CC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc-CC--cEE
Q 008939 131 TSMTNTNFDGKGTY--IIF-NV--GD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN-SG--DVY 201 (548)
Q Consensus 131 ~~v~~~~~~~~g~~--l~~-~~--~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~-dg--~I~ 201 (548)
+....-.|+|||+. +++ +. +. .|++.++.++..+.+..+ +......+|+|+ |+.|+.... +| .++
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~g~~~~p~wSPD---G~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---QGNQLMPTFSPR---KKLLAFISDRYGNPDLF 258 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---CCCccceEECCC---CCEEEEEECCCCCccee
Confidence 34456799999975 322 22 23 789999987654444433 334556899999 666766553 33 344
Q ss_pred E--EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 202 S--VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 202 i--wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
+ |++........+.+.. . ........+|+|||+.++++...+|...+|.+......
T Consensus 259 ~~~~~~~~g~~g~~~~lt~------~---~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g------------- 316 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLN------E---AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG------------- 316 (428)
T ss_pred EEEeecccCCCCcceEeec------C---CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-------------
Confidence 4 5554310000011110 0 11234567999999944445556776666654321100
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC---CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEE
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI 356 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l 356 (548)
.....+..+...+....|+|||+.|+....+ ..|.+||+.+++.... ......+....|+|||+.|
T Consensus 317 ----------~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 317 ----------QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHL 385 (428)
T ss_pred ----------cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEE
Confidence 0011222223456788999999999877653 4699999998876433 2223456789999999987
Q ss_pred EEEeC---CCeEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 357 LTGGE---DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 357 ~sgs~---dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
+.... ...|.+||+..++...... ..+.+...+|+|
T Consensus 386 ~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~ 424 (428)
T PRK01029 386 VYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFPSWGA 424 (428)
T ss_pred EEEECCCCCceEEEEECCCCCEEEeec-CCCcccCceecC
Confidence 75433 3578899998776544433 445566777877
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1.5e-09 Score=107.71 Aligned_cols=197 Identities=18% Similarity=0.251 Sum_probs=147.4
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee--ecCC--CeEEEE----ECCCCCEEEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH--ICQG--SINSIA----FSTDGTYLAT 316 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~--~v~~~~----~sp~g~~l~s 316 (548)
+||....||.+++|+..+ ++....|.+...-.. .+....|. .... ...++. -+.|-..++-
T Consensus 7 ~~A~~~~~g~l~iw~t~~-~~~~~e~~p~~~~s~----------t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAK-NQLQQEFAPIASLSG----------TCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred eEeecCCCCeEEEEEccC-ceeeeeeccchhccC----------cceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence 899999999999999987 333333333221110 01111111 0000 011111 1223446888
Q ss_pred EECCCeEEEEeCCCCeEEEeee--ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecC
Q 008939 317 VGRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSY 394 (548)
Q Consensus 317 ~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~ 394 (548)
|...|.|.+|+...+++...+. .|.+.|.++.++.+-..|.+++.|..+..|+..+.+.++.+.+....+..++.+|
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~- 154 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP- 154 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-
Confidence 8899999999999999877665 6889999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCC
Q 008939 395 WSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPK 474 (548)
Q Consensus 395 ~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~ 474 (548)
|| ..+++++ ++|++||+++++.+..
T Consensus 155 ------D~------~~l~~as--~~ik~~~~~~kevv~~----------------------------------------- 179 (541)
T KOG4547|consen 155 ------DG------KILLTAS--RQIKVLDIETKEVVIT----------------------------------------- 179 (541)
T ss_pred ------CC------CEEEecc--ceEEEEEccCceEEEE-----------------------------------------
Confidence 98 6888877 6899999999887654
Q ss_pred CCceEEeecCCCCeeEEEEeCC-------e-EEEEECCCeEEEEeCCC
Q 008939 475 LSPLVAHRVHTEPLSGLIFTQE-------S-VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 475 ~~~~~~~~~h~~~V~~l~fspd-------~-l~t~s~Dg~I~iW~~~~ 514 (548)
+.+|..+|+++.|..+ + |.++..+.-|.+|-+..
T Consensus 180 ------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 180 ------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ------ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 4569999999999875 2 56667888899998765
No 257
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.20 E-value=1.8e-08 Score=98.40 Aligned_cols=326 Identities=13% Similarity=0.107 Sum_probs=202.6
Q ss_pred CCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc---------
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD--------- 199 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~--------- 199 (548)
-.-++..++|+|.|.++++.....|.+|.-... ..+..+ ....+..+.|+|. +.+|.+-...+.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~--~~l~~~--~~~~V~~~~fSP~---~kYL~tw~~~pi~~pe~e~sp 103 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSK--AKLVRF--RHPDVKYLDFSPN---EKYLVTWSREPIIEPEIEISP 103 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccch--hheeee--ecCCceecccCcc---cceeeeeccCCccChhhccCC
Confidence 355778899999999999988889999998873 344333 3357888999998 777877665543
Q ss_pred ------EEEEEeeecccccccceeeeeeeccCCcccCcceE-EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc
Q 008939 200 ------VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCT-SVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 200 ------I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
+.+||+.. +. ++....... ...-.. -+.|+-++. ++|-- ....++|+++ +..-..
T Consensus 104 ~~~~n~~~vwd~~s-----g~-iv~sf~~~~----q~~~~Wp~~k~s~~D~-y~ARv-v~~sl~i~e~-t~n~~~----- 165 (561)
T COG5354 104 FTSKNNVFVWDIAS-----GM-IVFSFNGIS----QPYLGWPVLKFSIDDK-YVARV-VGSSLYIHEI-TDNIEE----- 165 (561)
T ss_pred ccccCceeEEeccC-----ce-eEeeccccC----Ccccccceeeeeecch-hhhhh-ccCeEEEEec-CCcccc-----
Confidence 88888876 22 222111100 111133 677888776 43332 3456899997 321111
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC--CCEEEE-----EECCCeEEEEeCCCCeEEEeeeecCCceE
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLAT-----VGRDGYLRVFDYSKEQLICGGKSYYGALL 345 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s-----~~~dg~v~vwd~~~~~~~~~~~~~~~~v~ 345 (548)
.|.+.++ ...|..+.|+|. +..|++ ...++.+++|.+-.+..+.+..-....=.
T Consensus 166 -----------------~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 166 -----------------HPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV 226 (561)
T ss_pred -----------------Cchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence 1111111 156888899985 344554 35678999999987766554332223334
Q ss_pred EEEEccCCCEEEEEe-----------CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE
Q 008939 346 CCAWSMDGKYILTGG-----------EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414 (548)
Q Consensus 346 ~l~~spdg~~l~sgs-----------~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~ 414 (548)
.+.|.+.|++|++-- .+..+.|++++...+.... .-.++|...+|.| .+. .--+++|
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p-------~S~----~F~vi~g 294 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEP-------LSS----RFAVISG 294 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecc-------cCC----ceeEEec
Confidence 688999999766421 2346888888854433332 5688999999998 661 0234455
Q ss_pred eCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceE-EeecCCCCeeEEEE
Q 008939 415 GQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV-AHRVHTEPLSGLIF 493 (548)
Q Consensus 415 ~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~-~~~~h~~~V~~l~f 493 (548)
-.+..+.++|++.. ++..+ .+..-+.+.|++...... ..-.+.+.+.+.+||....-.+. .+.+- ..+-+.|
T Consensus 295 ~~pa~~s~~~lr~N-l~~~~-Pe~~rNT~~fsp~~r~il---~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~w 367 (561)
T COG5354 295 YMPASVSVFDLRGN-LRFYF-PEQKRNTIFFSPHERYIL---FAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDW 367 (561)
T ss_pred ccccceeecccccc-eEEec-CCcccccccccCcccEEE---EecCCccccceEEeccCCceEEEEEeecC--CceEeec
Confidence 58899999999876 33333 335566677777653111 01234556677788766544433 44332 3355779
Q ss_pred eCCe--EEEE--E----CCCeEEEEeCCCCCc
Q 008939 494 TQES--VLTV--C----REGHIKIWMRPGVAE 517 (548)
Q Consensus 494 spd~--l~t~--s----~Dg~I~iW~~~~~~~ 517 (548)
+||+ +.+. + .|..|+|||+.+...
T Consensus 368 spd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 368 SPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred cCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 9984 3333 2 578999999987663
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.18 E-value=3.6e-09 Score=96.36 Aligned_cols=195 Identities=18% Similarity=0.187 Sum_probs=132.8
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec---CCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP---GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p---~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
..|.+++|++......+...+. . .....+..+.|.. ++...++-+..+|.|.+|...... ....+
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q-~--------~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~-ss~~L-- 111 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQ-C--------TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDE-SSVHL-- 111 (339)
T ss_pred eccceEEEeecccccCccceee-e--------ecccccceeeeeeccCCccceeeeccccceEEEEeeccce-eeeee--
Confidence 4577888988763212111111 1 1356778888864 333367788899999999876421 11111
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE--EeeeecCCceEEEEEc
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI--CGGKSYYGALLCCAWS 350 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~l~~s 350 (548)
+++...+......-++.|++.+..+++...+|.+.+-+.....+. +..+.|.-.+..+.|+
T Consensus 112 -----------------~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~ 174 (339)
T KOG0280|consen 112 -----------------RGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFS 174 (339)
T ss_pred -----------------cccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecc
Confidence 111111111123457889998889999999999996666555443 3788899999999987
Q ss_pred cCC-CEEEEEeCCCeEEEEECCC-ceeEEe-ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC-
Q 008939 351 MDG-KYILTGGEDDLVQVWSMED-RKVVAW-GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE- 426 (548)
Q Consensus 351 pdg-~~l~sgs~dg~I~vwd~~~-~~~~~~-~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~- 426 (548)
... +++.+|++|+.+..||++- ++.+.. .+-|...|.+|.-+| +.+ .+|++|+.|-.|++||.+
T Consensus 175 ~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~------~~~------~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 175 DKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSP------PKP------TYIATGSYDECIRVLDTRN 242 (339)
T ss_pred cCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCC------CCC------ceEEEeccccceeeeehhc
Confidence 643 5889999999999999993 344433 446889999998877 144 799999999999999998
Q ss_pred CCeEE
Q 008939 427 MDEIV 431 (548)
Q Consensus 427 ~~~~~ 431 (548)
.++.+
T Consensus 243 m~kPl 247 (339)
T KOG0280|consen 243 MGKPL 247 (339)
T ss_pred ccCcc
Confidence 45544
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=3.4e-10 Score=124.41 Aligned_cols=207 Identities=14% Similarity=0.226 Sum_probs=157.1
Q ss_pred CCcccccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEe-cCCCCceEEEecCCCCCCceEEEEE
Q 008939 118 SSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIH-FSNSNPVCHAFDQDAKDGHDLLIGL 195 (548)
Q Consensus 118 ~~~~~~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~-~~~~~~~~~~~~p~~~~~~~l~~g~ 195 (548)
+++.+++-.-.+-+.+.++.-+|...+-+++++| .+++|....+. +|...+ ..+..++.+.|+.+ |+.+.++.
T Consensus 2196 ~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~--~v~~~rt~g~s~vtr~~f~~q---Gnk~~i~d 2270 (2439)
T KOG1064|consen 2196 TSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ--QVVCFRTAGNSRVTRSRFNHQ---GNKFGIVD 2270 (2439)
T ss_pred ecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCC--eEEEeeccCcchhhhhhhccc---CCceeeec
Confidence 3344445555556667777777888888888888 89999887754 554443 34578888999988 88899999
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe---CCCcEEEEEcCCCCCCCCCccc
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH---ADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~---~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
.||.+.+|.... +..... ..|.....++.|-. . ++++++ .++++.+||....+.
T Consensus 2271 ~dg~l~l~q~~p------k~~~s~-------qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~------- 2327 (2439)
T KOG1064|consen 2271 GDGDLSLWQASP------KPYTSW-------QCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPM------- 2327 (2439)
T ss_pred cCCceeecccCC------cceecc-------ccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcc-------
Confidence 999999998763 233222 23788888998876 3 566654 578999999875321
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd 352 (548)
...+. ..|.+.++++++-|..++|++|+.+|.|++||++..++++.++. +. .
T Consensus 2328 ----------------~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~ 2379 (2439)
T KOG1064|consen 2328 ----------------NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-T 2379 (2439)
T ss_pred ----------------cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-h
Confidence 11222 67889999999999999999999999999999998888776664 44 5
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEEecc
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~~~~~~ 380 (548)
..++++|+..|.|+||++.....++.+.
T Consensus 2380 ~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2380 REYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred hheeeccCcccceEEEEccccchhhcCc
Confidence 5689999999999999999887776665
No 260
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.16 E-value=1.2e-07 Score=96.43 Aligned_cols=299 Identities=17% Similarity=0.147 Sum_probs=171.8
Q ss_pred CCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeee
Q 008939 142 GTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAH 220 (548)
Q Consensus 142 g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~ 220 (548)
+..++++..+ .|+-+|..+++ .+-............+. ++..+++++.+|.|+.+|.++ ++.+....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~--~~W~~~~~~~~~~~p~v-----~~~~v~v~~~~g~l~ald~~t-----G~~~W~~~ 132 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGK--RLWRVDLDERLSGGVGA-----DGGLVFVGTEKGEVIALDAED-----GKELWRAK 132 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCc--EeeeecCCCCcccceEE-----cCCEEEEEcCCCEEEEEECCC-----CcEeeeec
Confidence 3455555554 88888887765 55444433321111222 155788999999999999876 33332211
Q ss_pred eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 221 HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 221 ~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
. ...+.+.-.. .+. .++.+..+|.|+.||..+ ++....+..... ...+. .
T Consensus 133 ~--------~~~~~~~p~v-~~~-~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~----------------~~~~~---~ 182 (377)
T TIGR03300 133 L--------SSEVLSPPLV-ANG-LVVVRTNDGRLTALDAAT-GERLWTYSRVTP----------------ALTLR---G 182 (377)
T ss_pred c--------CceeecCCEE-ECC-EEEEECCCCeEEEEEcCC-CceeeEEccCCC----------------ceeec---C
Confidence 0 1112111111 233 677788899999999876 333222211000 00000 0
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCC-------ceEEEEEcc--CCCEEEEEeCCCeEEEEECC
Q 008939 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG-------ALLCCAWSM--DGKYILTGGEDDLVQVWSME 371 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-------~v~~l~~sp--dg~~l~sgs~dg~I~vwd~~ 371 (548)
. ..... .+..++.+..++.+..+|.++++.+........ .+..+.-+| .+..+++++.++.+..||.+
T Consensus 183 ~-~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~ 259 (377)
T TIGR03300 183 S-ASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLR 259 (377)
T ss_pred C-CCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECC
Confidence 0 00111 123677788889999999999987755331100 000011111 24577888889999999999
Q ss_pred CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CC-CCCceecCCC
Q 008939 372 DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PL-GGSPTFSTGS 449 (548)
Q Consensus 372 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~-~~~~~~~~~~ 449 (548)
+++.+-... ... ....... ++ .+..++.||.|..+|..+++.+...... .. ...+
T Consensus 260 tG~~~W~~~-~~~-~~~p~~~--------~~-------~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp------ 316 (377)
T TIGR03300 260 SGRVLWKRD-ASS-YQGPAVD--------DN-------RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP------ 316 (377)
T ss_pred CCcEEEeec-cCC-ccCceEe--------CC-------EEEEECCCCeEEEEECCCCcEEEccccccCCccccC------
Confidence 998765544 211 1122222 33 6777788999999999999887655321 11 1111
Q ss_pred CccccCCeeeecccCCCCceeecCCCCceEEeecCCCCe-eEEEEeCCeEEEEECCCeEEEE
Q 008939 450 QSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPL-SGLIFTQESVLTVCREGHIKIW 510 (548)
Q Consensus 450 ~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V-~~l~fspd~l~t~s~Dg~I~iW 510 (548)
...+..+.++..++.+..+|..+++.+..+..+...+ ...++..+.|+.++.||.|..|
T Consensus 317 --~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 317 --AVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred --EEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 1123456667777888888888888888777665433 3334555678888888888765
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.15 E-value=1.3e-07 Score=92.52 Aligned_cols=242 Identities=17% Similarity=0.171 Sum_probs=151.8
Q ss_pred eCCCCCEEEEecC-----------CeEEEEEccCCCCCCeEEEecCC-------CCceEEEecCCCCCCceEEEEE-c-C
Q 008939 138 FDGKGTYIIFNVG-----------DAIFISDLNSQDKDPIKSIHFSN-------SNPVCHAFDQDAKDGHDLLIGL-N-S 197 (548)
Q Consensus 138 ~~~~g~~l~~~~~-----------d~v~vwd~~~~~~~~i~~~~~~~-------~~~~~~~~~p~~~~~~~l~~g~-~-d 197 (548)
++|||+.+..+.. |.|.|||..+.. .+..+...+ ..+..++++|+ +++|++.. . +
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~~~~~~~~~~ls~d---gk~l~V~n~~p~ 127 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFLVGTYPWMTSLTPD---NKTLLFYQFSPS 127 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhhccCccceEEECCC---CCEEEEecCCCC
Confidence 8999998887655 499999999944 888887532 23458899999 77888776 4 6
Q ss_pred CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
..|.++|+.+ ++++..... .+ +..+--.++.. +.+-+.||......++..+..........+..
T Consensus 128 ~~V~VvD~~~------~kvv~ei~v-------p~-~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~ 191 (352)
T TIGR02658 128 PAVGVVDLEG------KAFVRMMDV-------PD-CYHIFPTANDT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPE 191 (352)
T ss_pred CEEEEEECCC------CcEEEEEeC-------CC-CcEEEEecCCc--cEEEeecCceEEEEecCCCceEEeeeeeecCC
Confidence 7899999987 344433321 11 11111111111 22334566666655554333110000000000
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCe-----EEEeeee-------cCCce
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQ-----LICGGKS-------YYGAL 344 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~-------~~~~v 344 (548)
..++ ...+ .|.+ +++++.+... |.|.+.|+...+ .+..+.. ..+.+
T Consensus 192 -----------~~~v-----~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 192 -----------DEYL-----INHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred -----------cccc-----ccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 0000 0122 4455 8877777666 999999965432 2222111 12344
Q ss_pred EEEEEccCCCEEEEEe----------CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeE-EEEE
Q 008939 345 LCCAWSMDGKYILTGG----------EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY-RFGS 413 (548)
Q Consensus 345 ~~l~~spdg~~l~sgs----------~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~-~l~s 413 (548)
.-++++|+++.+++.. ..+.|.++|..+++.+..+. -...+..|+++| || + +|.+
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~-------Dg------kp~lyv 316 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQ-------DA------KPLLYA 316 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECC-------CC------CeEEEE
Confidence 5599999999888843 12579999999999998887 345889999999 98 4 5554
Q ss_pred Ee-CCCeEEEEECCCCeEEeeee
Q 008939 414 VG-QDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 414 ~~-~Dg~i~lwd~~~~~~~~~~~ 435 (548)
.. .++.|.+.|..+++.+..+.
T Consensus 317 tn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 317 LSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred eCCCCCcEEEEECcCCeEEeeec
Confidence 44 68889999999999988873
No 262
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.14 E-value=2.1e-09 Score=99.79 Aligned_cols=254 Identities=15% Similarity=0.239 Sum_probs=180.3
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
.++.++.+.+.++....-|.. .-++..+.|.++++|--+.. ++..-...+ ....+++++.+.++..
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e---~gv~~~s~drtvrv~lkrds----~q~wpsI~~------~mP~~~~~~~y~~e~~- 81 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKE---EGVISVSEDRTVRVWLKRDS----GQYWPSIYH------YMPSPCSAMEYVSESR- 81 (404)
T ss_pred hhhhhcCchhhhhhheeccCC---CCeEEccccceeeeEEeccc----cccCchhhh------hCCCCceEeeeeccce-
Confidence 345555566666666666653 34899999999999965441 111111111 1477899999999988
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
.|++|-..|++.-+.+..+ +.+....+.+..|...+..+-|+-....+++.+.|..+.
T Consensus 82 ~L~vg~~ngtvtefs~sed----------------------fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~ 139 (404)
T KOG1409|consen 82 RLYVGQDNGTVTEFALSED----------------------FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA 139 (404)
T ss_pred EEEEEEecceEEEEEhhhh----------------------hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE
Confidence 8999999999999987642 234566778888999999999998888999999998776
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC--ceeEEeccCCCCCeEEEEEecCCCCCCCCC
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED--RKVVAWGEGHNSWVSGVAFDSYWSQPNSDG 402 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~--~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg 402 (548)
-.-.+.+..+..+.- .....++.+.-. +...|...+.|.+..+.. -.++.++.+|...+.+++|.| ..
T Consensus 140 ~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-------~~ 209 (404)
T KOG1409|consen 140 WHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-------GQ 209 (404)
T ss_pred EEeeccCCcccceEe-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-------CC
Confidence 555555554432221 111112222211 556677777777776644 467889999999999999988 44
Q ss_pred CccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee
Q 008939 403 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR 482 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~ 482 (548)
.+|.++..|..+.+||+.-..-+ ...+.
T Consensus 210 ------~~LfSg~~d~~vi~wdigg~~g~----------------------------------------------~~el~ 237 (404)
T KOG1409|consen 210 ------RLLFSGASDHSVIMWDIGGRKGT----------------------------------------------AYELQ 237 (404)
T ss_pred ------cEEEeccccCceEEEeccCCcce----------------------------------------------eeeec
Confidence 58999999999999998754322 12345
Q ss_pred cCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCC
Q 008939 483 VHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 483 ~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~ 516 (548)
+|.+.|..+...+. .|++++.||.|-+|++.-..
T Consensus 238 gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 238 GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred cchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 78888888877664 59999999999999986543
No 263
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=9.1e-09 Score=101.58 Aligned_cols=239 Identities=15% Similarity=0.213 Sum_probs=159.8
Q ss_pred eeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEE-----EcCCcEEEEEeeec
Q 008939 134 TNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIG-----LNSGDVYSVSLRQQ 208 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g-----~~dg~I~iwdl~~~ 208 (548)
-+..|+.|..+.+--....+++|++..-. ... -.++...+..+.++|... ...+++= +.-..|+||.....
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~-~~~--~kl~~~~i~~f~lSpgp~-~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFK-TIQ--HKLSVSGITMLSLSPGPE-PPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCcc-cee--eeeeccceeeEEecCCCC-CceEEEEccCCCCCCcEEEEeccccc
Confidence 36889999888888888899999998722 222 333566788888888632 1222221 23345888876621
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC-----------CcEEEEEcCCCCCCCCCcccccccc
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-----------GNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d-----------g~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
.....+.. ..| .+..=..+.|++-+..+|+.++.| .+++++++..+ .
T Consensus 205 --~~~~~~a~-ksF------Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~-s------------ 262 (566)
T KOG2315|consen 205 --GQHQPVAN-KSF------FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE-S------------ 262 (566)
T ss_pred --cccchhhh-ccc------cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc-e------------
Confidence 11111111 111 233335788998887666655432 34666665521 0
Q ss_pred eeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEEE--EECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC
Q 008939 278 QFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLAT--VGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK 354 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s--~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~ 354 (548)
..+.. ..++|+++.|+|+++.+++ |..--.+.|||++ +.++..+. .++-+++-|+|.|+
T Consensus 263 ---------------~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ 324 (566)
T KOG2315|consen 263 ---------------VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGN 324 (566)
T ss_pred ---------------EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCC
Confidence 01111 1489999999999987765 4566789999997 66666553 57778999999999
Q ss_pred EEEEEeCC---CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC------CCeEEEEEC
Q 008939 355 YILTGGED---DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ------DTRLLLWDL 425 (548)
Q Consensus 355 ~l~sgs~d---g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~------Dg~i~lwd~ 425 (548)
+|+.++-+ |.|.|||+.+.+++..+..... +-..|+| || .+|+++.. |+.++||++
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~P-------dG------e~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSP-------DG------EYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcC-------CC------cEEEEEeccccEEecCCeEEEEe
Confidence 98887764 7899999999999888875443 4578999 99 67777753 788999998
Q ss_pred CCCeEEe
Q 008939 426 EMDEIVV 432 (548)
Q Consensus 426 ~~~~~~~ 432 (548)
. |..+.
T Consensus 390 t-G~~l~ 395 (566)
T KOG2315|consen 390 T-GSLLH 395 (566)
T ss_pred c-Cceee
Confidence 5 44443
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.12 E-value=1e-07 Score=107.68 Aligned_cols=263 Identities=14% Similarity=0.152 Sum_probs=158.3
Q ss_pred eeEEeCCC-CCEEEEecCC-eEEEEEccCCCCCCeEEEec--------------CCCCceEEEecCCCCCCceEEEEEc-
Q 008939 134 TNTNFDGK-GTYIIFNVGD-AIFISDLNSQDKDPIKSIHF--------------SNSNPVCHAFDQDAKDGHDLLIGLN- 196 (548)
Q Consensus 134 ~~~~~~~~-g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~--------------~~~~~~~~~~~p~~~~~~~l~~g~~- 196 (548)
..++++++ +.+.++..++ .|++||.... .+..+-. .-..+..++++++ ++.|+++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~---gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK---KNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCC---CCEEEEEeCC
Confidence 45788875 5555565555 8999998642 2222221 0125789999987 666666655
Q ss_pred CCcEEEEEeeecccccccceeeeee--eccCCc----c-cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 008939 197 SGDVYSVSLRQQLQDVGKKLVGAHH--YNKDGS----V-NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS 269 (548)
Q Consensus 197 dg~I~iwdl~~~~~~~~~~~~~~~~--~~~~~~----~-~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 269 (548)
++.|+++|+.+.. ...+..... ....+. . .-....+++|+|++..++++...++.|++||...... ..
T Consensus 645 n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~ 719 (1057)
T PLN02919 645 NHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RV 719 (1057)
T ss_pred CceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EE
Confidence 4668889876521 000100000 000000 0 0123468999996554777777889999999865211 00
Q ss_pred cccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEE-EEECCCeEEEEeCCCCeEEEeeee---------
Q 008939 270 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLA-TVGRDGYLRVFDYSKEQLICGGKS--------- 339 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~-s~~~dg~v~vwd~~~~~~~~~~~~--------- 339 (548)
+. .+...... .... .....-.....++|+|+++.|+ +-..++.|++||+.++.......+
T Consensus 720 ~~--G~G~~~~~-------~g~~-~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~ 789 (1057)
T PLN02919 720 FS--GDGYERNL-------NGSS-GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLF 789 (1057)
T ss_pred Ee--cCCccccC-------CCCc-cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccc
Confidence 00 00000000 0000 0000113467899999988555 445678999999987653211100
Q ss_pred ------------cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc-------------CCCCCeEEEEEecC
Q 008939 340 ------------YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-------------GHNSWVSGVAFDSY 394 (548)
Q Consensus 340 ------------~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-------------~h~~~V~~v~~~p~ 394 (548)
.......++++++|+++++-..++.|++||..++....... +.-.....|++++
T Consensus 790 ~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~- 868 (1057)
T PLN02919 790 KFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE- 868 (1057)
T ss_pred cccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-
Confidence 01124588999999988888899999999998876543221 1123567899998
Q ss_pred CCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 395 WSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 395 ~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
+| +++++-+.++.|++||+.+++.
T Consensus 869 ------dG------~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 869 ------NG------RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ------CC------CEEEEECCCCEEEEEECCCCcc
Confidence 88 6888888999999999998865
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=1.2e-08 Score=94.85 Aligned_cols=235 Identities=15% Similarity=0.243 Sum_probs=145.6
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeee-------eeccCCcccCcceEEEEEecCCC-c
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAH-------HYNKDGSVNNSRCTSVTWVPGGD-G 244 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~l~~~p~~~-~ 244 (548)
.+.+.++.|+.. |.+|++|..+|.|.++.-...... ........ .+.+... ....|+.+.|.++++ .
T Consensus 25 adiis~vef~~~---Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSle-ieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 25 ADIISAVEFDHY---GERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLE-IEEKINKIRWLDDGNLA 99 (433)
T ss_pred hcceeeEEeecc---cceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhh-hhhhhhhceecCCCCcc
Confidence 346788888888 889999999999999975542110 00111111 1111111 357899999998775 3
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccc-----eeeee----cCCCCCCCCeeEe-eecCCCeEEEEECCCCCEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT-----QFSVA----HPRYSKSNPIARW-HICQGSINSIAFSTDGTYL 314 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~-~~h~~~v~~~~~sp~g~~l 314 (548)
.|+....|.+|++|.+...+.....+....... .+.+. +.......|.+.+ ..|..-|+++.++.|+..+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 678888999999999865333221111100000 00000 0000011122222 4578889999999999988
Q ss_pred EEEECCCeEEEEeCCCCeE---EEeeeec-----CCceEEEEEccCC-CEEEEEeCCCeEEEEECCCceeE----E----
Q 008939 315 ATVGRDGYLRVFDYSKEQL---ICGGKSY-----YGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKVV----A---- 377 (548)
Q Consensus 315 ~s~~~dg~v~vwd~~~~~~---~~~~~~~-----~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~~~----~---- 377 (548)
+++ .|=.|.+|+++--.. +..++.+ ..-|++..|+|.. +.++-.+..|.|++.||+...+- .
T Consensus 180 lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 180 LSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred eec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 887 467899999973321 2233333 2357888999964 46777788999999999853211 1
Q ss_pred --------eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 378 --------WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 378 --------~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
.+..--..|+.+.|++ +| ++|++-.. -+|++||+.+
T Consensus 259 pedp~~rsffseiIsSISDvKFs~-------sG------ryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSH-------SG------RYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEcc-------CC------cEEEEecc-ceeEEEeccc
Confidence 1112235788999998 88 67776432 6899999964
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=8e-07 Score=83.98 Aligned_cols=268 Identities=14% Similarity=0.211 Sum_probs=166.8
Q ss_pred ccccccCCCCCCceeEEeCCCCCEEEEecC---C-eEEEEEccC--CCCCCeEEEecCCCCceEEEecCCCCCCceEEEE
Q 008939 121 IGSLGASSSSTSMTNTNFDGKGTYIIFNVG---D-AIFISDLNS--QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIG 194 (548)
Q Consensus 121 ~~~~~~~~h~~~v~~~~~~~~g~~l~~~~~---d-~v~vwd~~~--~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g 194 (548)
+..+......+.++.++|+++++.|.+... + .|--|.++. +....+.........++.++++++ +++|+++
T Consensus 30 l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~---g~~vf~A 106 (346)
T COG2706 30 LSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDED---GRFVFVA 106 (346)
T ss_pred cchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCC---CCEEEEE
Confidence 334444556677889999999988776432 2 555555553 443445555555566789999998 7788877
Q ss_pred Ec-CCcEEEEEeeecccccccceeeeeeeccCCccc----CcceEEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCC
Q 008939 195 LN-SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVN----NSRCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSKDGAGDS 268 (548)
Q Consensus 195 ~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~l~~~p~~~~~l~s~~-~dg~v~vwd~~~~~~~~~ 268 (548)
.. .|.|.++-+... .....++.... ......| ..-+....+.|+++ +|++.+ .-..|.+|++.. +....
T Consensus 107 nY~~g~v~v~p~~~d--G~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y~~~d-g~L~~ 181 (346)
T COG2706 107 NYHSGSVSVYPLQAD--GSLQPVVQVVK-HTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLYDLDD-GKLTP 181 (346)
T ss_pred EccCceEEEEEcccC--Cccccceeeee-cCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEEEccc-Ccccc
Confidence 65 578999988652 11111211111 0000011 12288899999999 666554 445899999983 44322
Q ss_pred CcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCC-eEEEeeee-------
Q 008939 269 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSKE-QLICGGKS------- 339 (548)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~~-~~~~~~~~------- 339 (548)
..+..- ......+.|.|+|++++.+... .+++|.+|.+... ..+..++.
T Consensus 182 ~~~~~v----------------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 182 ADPAEV----------------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred cccccc----------------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc
Confidence 211100 1125678899999999877665 5889999999763 11222221
Q ss_pred --cCCceEEEEEccCCCEEEEEeC-CCeEEEEECCCc--e--eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 340 --YYGALLCCAWSMDGKYILTGGE-DDLVQVWSMEDR--K--VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 340 --~~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~~~--~--~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
...+.-.|..++||++|.++.. ...|.+|.+... + .+....-+...-+...|+| +| .+|+
T Consensus 240 F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-------~g------~~Li 306 (346)
T COG2706 240 FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-------SG------RFLI 306 (346)
T ss_pred cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-------CC------CEEE
Confidence 1346778999999999988765 347888887643 2 2222233445567888888 77 5676
Q ss_pred EEeCC-CeEEEEECC--CCeEE
Q 008939 413 SVGQD-TRLLLWDLE--MDEIV 431 (548)
Q Consensus 413 s~~~D-g~i~lwd~~--~~~~~ 431 (548)
.+.+| ..|.+|.+. +|++.
T Consensus 307 aa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 307 AANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred EEccCCCcEEEEEEcCCCceEE
Confidence 66664 568888654 45443
No 267
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=3e-07 Score=94.15 Aligned_cols=356 Identities=15% Similarity=0.098 Sum_probs=229.5
Q ss_pred ceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCC---------CCceEEEEEcCCcEEEE
Q 008939 133 MTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAK---------DGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~---------~~~~l~~g~~dg~I~iw 203 (548)
-..+.|++.| +|+++++..|.|-|..+ .+.|..+..|+..|+.+.|.|... ..-+|+++...|.|.+|
T Consensus 18 ~~A~Dw~~~G-LiAygshslV~VVDs~s--~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHSLVSVVDSRS--LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred ccccccCccc-eEEEecCceEEEEehhh--hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 4467787766 78899999999999887 458999999999999999998532 12356777778999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCC---CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG---DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
|..... .... ...+..++.+++|.+.. ..+|++-+....|.+|+..+++. .+.+.
T Consensus 95 d~~~~s------~~~~------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~--------- 152 (1062)
T KOG1912|consen 95 DFVLAS------VINW------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-FWKYD--------- 152 (1062)
T ss_pred Eehhhh------hhhh------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce-eeccc---------
Confidence 987621 1100 01267788999998743 24788888889999999987432 22211
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCC-------CeEEEeeeecCC----------
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSK-------EQLICGGKSYYG---------- 342 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~-------~~~~~~~~~~~~---------- 342 (548)
.......|+.+.| |.+.+..-+..|.+.+.+.-- ++..+.-..|..
T Consensus 153 ----------------ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at 216 (1062)
T KOG1912|consen 153 ----------------YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETAT 216 (1062)
T ss_pred ----------------cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhc
Confidence 1124566788888 777788777888887776531 222222222211
Q ss_pred ---------------ceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 343 ---------------ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 343 ---------------~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
....++|+|.-+.++-..-...+.|+|++-..++....-..+.+.-+.+-| +++.
T Consensus 217 ~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP-------~~~r--- 286 (1062)
T KOG1912|consen 217 GNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP-------DPRR--- 286 (1062)
T ss_pred cccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEecc-------CCCc---
Confidence 012346788776666566678899999998888877766666677778877 5521
Q ss_pred eEEEEEEeCCCeEEEEECCC----------------CeEE---eeeecC-------CCCC--C-----------------
Q 008939 408 MYRFGSVGQDTRLLLWDLEM----------------DEIV---VPLRRG-------PLGG--S----------------- 442 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~~----------------~~~~---~~~~~~-------~~~~--~----------------- 442 (548)
..|.....||.+.+|--+. ++.+ +.++.. .+.+ .
T Consensus 287 -d~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 287 -DALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred -ceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 2477788899999996543 2111 111110 0000 0
Q ss_pred --------------------------------ceecCCCC---------------------------ccccCCeeeeccc
Q 008939 443 --------------------------------PTFSTGSQ---------------------------SAHWDNVCPVGTL 463 (548)
Q Consensus 443 --------------------------------~~~~~~~~---------------------------~~~~d~~~~~g~~ 463 (548)
...+.++. .....-.+++|+.
T Consensus 366 ~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~ 445 (1062)
T KOG1912|consen 366 GRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTN 445 (1062)
T ss_pred CCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecC
Confidence 00011110 0011123477888
Q ss_pred CCCCceeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEECC----------CeEEEEeCCCCCcc-----ccCCCCcEE
Q 008939 464 QPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCRE----------GHIKIWMRPGVAES-----QSSSSETVL 527 (548)
Q Consensus 464 ~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~D----------g~I~iW~~~~~~~~-----~~~~~~~v~ 527 (548)
.+.+.+.|+-+......+..|...|.++.|.-.. |++.+.. ..+.+-|++++... +...+..+.
T Consensus 446 sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~ 525 (1062)
T KOG1912|consen 446 SGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIR 525 (1062)
T ss_pred CceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcce
Confidence 8889999998888888888999999999998763 6555432 45667788876632 223333443
Q ss_pred --EecCCCCceEeee
Q 008939 528 --STSSKDKPLLSSK 540 (548)
Q Consensus 528 --~~s~d~~~l~s~~ 540 (548)
..|..++||+...
T Consensus 526 ~irvS~~~~yLai~F 540 (1062)
T KOG1912|consen 526 AIRVSSSGRYLAILF 540 (1062)
T ss_pred eeeecccCceEEEEe
Confidence 6788899987654
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=1.3e-06 Score=82.68 Aligned_cols=240 Identities=17% Similarity=0.231 Sum_probs=148.1
Q ss_pred CCeEEEEEccCCCC-CCeEEEecCCCCceEEEecCCCCCCceEEEEEcC---CcEEEEEeeecccccccceeeeeeeccC
Q 008939 150 GDAIFISDLNSQDK-DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---GDVYSVSLRQQLQDVGKKLVGAHHYNKD 225 (548)
Q Consensus 150 ~d~v~vwd~~~~~~-~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~ 225 (548)
++.|++|++++... .....+.....+++.++|+|+ .+.|.++-.+ |.|..|.++.. .++ +....+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~---~~~LY~v~~~~~~ggvaay~iD~~---~G~-Lt~ln~---- 83 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD---QRHLYVVNEPGEEGGVAAYRIDPD---DGR-LTFLNR---- 83 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCC---CCEEEEEEecCCcCcEEEEEEcCC---CCe-EEEeec----
Confidence 45899999985431 122233346779999999999 7678877665 56777776641 111 111111
Q ss_pred CcccCcceEEEEEecCCCcEEEEE-eCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEE
Q 008939 226 GSVNNSRCTSVTWVPGGDGAFVVG-HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINS 304 (548)
Q Consensus 226 ~~~~~~~v~~l~~~p~~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (548)
......+.+.++++++++ +++++ ...|.|.++-++.++.............. .|- -+....-+..
T Consensus 84 ~~~~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~-----------~p~--~rQ~~~h~H~ 149 (346)
T COG2706 84 QTLPGSPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS-----------GPH--ERQESPHVHS 149 (346)
T ss_pred cccCCCCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCC-----------CCC--ccccCCccce
Confidence 111233448899999999 55554 46789999999876654433222111000 000 0000122788
Q ss_pred EEECCCCCEEEEEEC-CCeEEEEeCCCCeEEEeee---ecCCceEEEEEccCCCEEEEEeC-CCeEEEEECCCc-eeEEe
Q 008939 305 IAFSTDGTYLATVGR-DGYLRVFDYSKEQLICGGK---SYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMEDR-KVVAW 378 (548)
Q Consensus 305 ~~~sp~g~~l~s~~~-dg~v~vwd~~~~~~~~~~~---~~~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~~~-~~~~~ 378 (548)
..|.|++++|++... --.|.+|++..+++...-. .....-+-|.|+|++++..+-.+ +++|.+|..+.. ..+..
T Consensus 150 a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 150 ANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred eeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence 999999999998752 2369999999876532211 23345788999999998777665 899999998773 22222
Q ss_pred cc---------CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEECCC
Q 008939 379 GE---------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDLEM 427 (548)
Q Consensus 379 ~~---------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~~ 427 (548)
++ .-..+...|..+| || +.|.++- ....|-+|.+..
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIhis~-------dG------rFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIHISP-------DG------RFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred eeeeccCccccCCCCceeEEEECC-------CC------CEEEEecCCCCeEEEEEEcC
Confidence 22 1245778899999 99 4444443 234666666543
No 269
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.04 E-value=3.8e-07 Score=101.22 Aligned_cols=265 Identities=20% Similarity=0.296 Sum_probs=158.3
Q ss_pred CCceeEEeCCCCCEEEEecCC--e---EEEEEccCCC-CCCeEEEe-----cCCCCceEEEecCCCCCCceEEEEEcCCc
Q 008939 131 TSMTNTNFDGKGTYIIFNVGD--A---IFISDLNSQD-KDPIKSIH-----FSNSNPVCHAFDQDAKDGHDLLIGLNSGD 199 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d--~---v~vwd~~~~~-~~~i~~~~-----~~~~~~~~~~~~p~~~~~~~l~~g~~dg~ 199 (548)
..+...+|++....+.+..+. . +.+....... ...+..+. ...+.+..+.|-++ ...|+++..+|.
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d---~~~l~~~~~~Gd 98 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLAD---SESLCIALASGD 98 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccC---CCcEEEEECCce
Confidence 345567777766555443332 2 2333322211 11222222 23457889999988 667999999999
Q ss_pred EEEE----EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc--c
Q 008939 200 VYSV----SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV--I 273 (548)
Q Consensus 200 I~iw----dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--~ 273 (548)
|.++ +.... .-.++.. ....|.+++|+||++ +|+....+++|.+.+.+-+.-....+.. .
T Consensus 99 i~~~~~~~~~~~~----~~E~VG~---------vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~ 164 (928)
T PF04762_consen 99 IILVREDPDPDED----EIEIVGS---------VDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPLDSDDF 164 (928)
T ss_pred EEEEEccCCCCCc----eeEEEEE---------EcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeecCcccc
Confidence 9999 43331 1112221 467899999999999 8999998999988764331111111110 1
Q ss_pred cccceeeeecCC--------CCC------CCCe------eEeeecCCCeEEEEECCCCCEEEEEEC---C---CeEEEEe
Q 008939 274 KDQTQFSVAHPR--------YSK------SNPI------ARWHICQGSINSIAFSTDGTYLATVGR---D---GYLRVFD 327 (548)
Q Consensus 274 ~~~~~~~~~~~~--------~~~------~~~~------~~~~~h~~~v~~~~~sp~g~~l~s~~~---d---g~v~vwd 327 (548)
+......++.++ ..| ..|. ..+. +...-..++|-.||+++|+.+. + ..+|||+
T Consensus 165 ~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ 243 (928)
T PF04762_consen 165 GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS 243 (928)
T ss_pred CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence 111122222111 111 1111 1122 3456668999999999998774 2 5799998
Q ss_pred CCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC---CCeEEEEECCCcee----EEeccCCCCCeEEEEEecCCCCCCC
Q 008939 328 YSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE---DDLVQVWSMEDRKV----VAWGEGHNSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 328 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~---dg~I~vwd~~~~~~----~~~~~~h~~~V~~v~~~p~~~~~~~ 400 (548)
-+ |++...-..-.+--.+++|.|.|++||+.-. ...|.+|.- +|-. ...+......|..+.|++
T Consensus 244 Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~------- 314 (928)
T PF04762_consen 244 RE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNS------- 314 (928)
T ss_pred CC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECC-------
Confidence 76 7665554444444457899999999988764 345666643 3322 222224567899999999
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
|+ ..|+..-.|. |.+|-...-.
T Consensus 315 ds------~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 315 DS------EILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred CC------CEEEEEecCC-ceEEEeeCCE
Confidence 88 5777766555 9999887654
No 270
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.03 E-value=3.5e-07 Score=101.57 Aligned_cols=326 Identities=16% Similarity=0.227 Sum_probs=185.6
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEE----EccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFIS----DLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vw----d~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
....|..+.|-++...++....+ .|.+. +... ..+..+-.-...+.|++|+|| ...|++.+.+++|.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~---~~~E~VG~vd~GI~a~~WSPD---~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE---DEIEIVGSVDSGILAASWSPD---EELLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC---ceeEEEEEEcCcEEEEEECCC---cCEEEEEeCCCEEEEE
Confidence 45678889998888766665443 55555 3333 344444445679999999999 7899999999998876
Q ss_pred Eeee------cc--cccc----------cceeeee----ee----ccC--------Ccc-cCcceEEEEEecCCCcEEEE
Q 008939 204 SLRQ------QL--QDVG----------KKLVGAH----HY----NKD--------GSV-NNSRCTSVTWVPGGDGAFVV 248 (548)
Q Consensus 204 dl~~------~~--~~~~----------~~~~~~~----~~----~~~--------~~~-~~~~v~~l~~~p~~~~~l~s 248 (548)
+-.= .+ .+.+ ++-.+.. +. .++ +.. ..+.-..|+|-.||. +||+
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~-yFAV 226 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE-YFAV 226 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc-EEEE
Confidence 4221 00 0000 1100000 00 000 000 233567899999999 8888
Q ss_pred EeC---C---CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC---
Q 008939 249 GHA---D---GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR--- 319 (548)
Q Consensus 249 ~~~---d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~--- 319 (548)
.+. . ..++||+-+ +.......+. .+--.+++|.|.|++||+.-.
T Consensus 227 ss~~~~~~~~R~iRVy~Re--G~L~stSE~v-------------------------~gLe~~l~WrPsG~lIA~~q~~~~ 279 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSRE--GELQSTSEPV-------------------------DGLEGALSWRPSGNLIASSQRLPD 279 (928)
T ss_pred EEEEcCCCceeEEEEECCC--ceEEeccccC-------------------------CCccCCccCCCCCCEEEEEEEcCC
Confidence 764 3 478899865 3222221111 133446899999999998764
Q ss_pred CCeEEEEeCCCCeEEE----eeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCcee--EEeccC-CCCCeEEEEEe
Q 008939 320 DGYLRVFDYSKEQLIC----GGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV--VAWGEG-HNSWVSGVAFD 392 (548)
Q Consensus 320 dg~v~vwd~~~~~~~~----~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~--~~~~~~-h~~~V~~v~~~ 392 (548)
...|.+|.-+ |..-. .+......|..+.|++|+..||.--.|. |.+|-+.+..- .+.+.- ....+..+.|+
T Consensus 280 ~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wd 357 (928)
T PF04762_consen 280 RHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWD 357 (928)
T ss_pred CcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEEC
Confidence 3456666543 32222 2223456799999999999999977665 99999988652 233331 23345559999
Q ss_pred cCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeec
Q 008939 393 SYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDV 472 (548)
Q Consensus 393 p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~ 472 (548)
| ... ..|.....++.+..+++.-......... +.........+|. .+.+-.+. .-.+
T Consensus 358 p-------e~p-----~~L~v~t~~g~~~~~~~~~~v~~s~~~~-~~D~g~vaVIDG~------~lllTpf~----~a~V 414 (928)
T PF04762_consen 358 P-------EKP-----LRLHVLTSNGQYEIYDFAWDVSRSPGSS-PNDNGTVAVIDGN------KLLLTPFR----RAVV 414 (928)
T ss_pred C-------CCC-----CEEEEEecCCcEEEEEEEEEEEecCCCC-ccCceEEEEEeCC------eEEEeccc----ccCC
Confidence 8 321 4566666667776666543222111110 1111222222221 00000000 0001
Q ss_pred CCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 473 PKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 473 ~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
|..=....+. -..+|.+++|+++. ++.-..||.|.+|..+.
T Consensus 415 PPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 415 PPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 1000011221 35789999999975 99999999999999544
No 271
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.03 E-value=4.4e-07 Score=92.26 Aligned_cols=292 Identities=15% Similarity=0.083 Sum_probs=168.5
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
+..+++++.+|.|+.+|..+ ++.+..... . ......... ++. .+++++.+|.++.+|..+ ++..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~t-----G~~~W~~~~-~------~~~~~~p~v--~~~-~v~v~~~~g~l~ald~~t-G~~~ 128 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAET-----GKRLWRVDL-D------ERLSGGVGA--DGG-LVFVGTEKGEVIALDAED-GKEL 128 (377)
T ss_pred CCEEEEECCCCeEEEEEccC-----CcEeeeecC-C------CCcccceEE--cCC-EEEEEcCCCEEEEEECCC-CcEe
Confidence 55789999999999999776 333322111 0 100111222 344 688888999999999876 3322
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC--CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCce-
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST--DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL- 344 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v- 344 (548)
...... +.+. -+| .+..++.+..++.|..||.++++.+..+......+
T Consensus 129 W~~~~~--------------------------~~~~---~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 129 WRAKLS--------------------------SEVL---SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT 179 (377)
T ss_pred eeeccC--------------------------ceee---cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee
Confidence 221110 1111 111 24567777889999999999999887765432211
Q ss_pred ----EEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC-C---CCeEEE-EEecCCCCCCC-CCCccceeEEEEEE
Q 008939 345 ----LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH-N---SWVSGV-AFDSYWSQPNS-DGTAETVMYRFGSV 414 (548)
Q Consensus 345 ----~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-~---~~V~~v-~~~p~~~~~~~-dg~~~~~~~~l~s~ 414 (548)
.+.... + ..++.+..++.+..+|.++++.+-..... . ..+..+ .+. +.|.- ++ .+..+
T Consensus 180 ~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~---~~p~~~~~-------~vy~~ 247 (377)
T TIGR03300 180 LRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVD---GDPVVDGG-------QVYAV 247 (377)
T ss_pred ecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccC---CccEEECC-------EEEEE
Confidence 111111 3 46788888999999999999766443211 0 000000 000 00100 33 57778
Q ss_pred eCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec-CCCCeeEEEE
Q 008939 415 GQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV-HTEPLSGLIF 493 (548)
Q Consensus 415 ~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~-h~~~V~~l~f 493 (548)
+.++.+..||.++++.+...... .... ....+..+.++..++.+..+|..+.+.+..... ..........
T Consensus 248 ~~~g~l~a~d~~tG~~~W~~~~~-~~~~--------p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i 318 (377)
T TIGR03300 248 SYQGRVAALDLRSGRVLWKRDAS-SYQG--------PAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV 318 (377)
T ss_pred EcCCEEEEEECCCCcEEEeeccC-CccC--------ceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE
Confidence 88999999999999887765531 1111 112345556666677788888877776655422 1122233334
Q ss_pred eCCeEEEEECCCeEEEEeCCCCCccc-cC-CCCcEE-E-ecCCCCceEeeecccccc
Q 008939 494 TQESVLTVCREGHIKIWMRPGVAESQ-SS-SSETVL-S-TSSKDKPLLSSKVVTSSY 546 (548)
Q Consensus 494 spd~l~t~s~Dg~I~iW~~~~~~~~~-~~-~~~~v~-~-~s~d~~~l~s~~~~g~~~ 546 (548)
..+.|++++.||.|.+||..+++..- .. +...+. . ...++ .|..++..|.+|
T Consensus 319 ~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~ 374 (377)
T TIGR03300 319 VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLY 374 (377)
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEE
Confidence 45679999999999999987766322 22 121222 1 12333 477777777665
No 272
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.99 E-value=3.6e-08 Score=91.73 Aligned_cols=266 Identities=12% Similarity=0.136 Sum_probs=167.3
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCC---CCeEEEecC------------CCCceEEEecCCCCCCceEEE
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK---DPIKSIHFS------------NSNPVCHAFDQDAKDGHDLLI 193 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~---~~i~~~~~~------------~~~~~~~~~~p~~~~~~~l~~ 193 (548)
..-+.++.|+..|.+|+++..+ .|-++.-....+ .....++.| ...+..+.|.++.. ...++.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n-~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN-LAEFLL 103 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC-ccEEEE
Confidence 3456789999999999998776 777775433211 011111111 13567778887743 667888
Q ss_pred EEcCCcEEEEEeeecccccc-----------------cceeee-------eeeccCCcccCcceEEEEEecCCCcEEEEE
Q 008939 194 GLNSGDVYSVSLRQQLQDVG-----------------KKLVGA-------HHYNKDGSVNNSRCTSVTWVPGGDGAFVVG 249 (548)
Q Consensus 194 g~~dg~I~iwdl~~~~~~~~-----------------~~~~~~-------~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 249 (548)
.+.|.+|++|.+........ .+++.. .....-...|.--|++|.++.|.+ .++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t~lSA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-TFLSA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-eEeec
Confidence 99999999999876311110 000000 000001224888899999999998 55554
Q ss_pred eCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeC
Q 008939 250 HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDY 328 (548)
Q Consensus 250 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~ 328 (548)
.|-.|.+|++....+. |.+..-+..+. ..-+.-|++..|+| .-+.++..+..|+|++.|+
T Consensus 183 -DdLRINLWnlei~d~s------------FnIVDIKP~nm------EeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQS------------FNIVDIKPANM------EELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM 243 (433)
T ss_pred -cceeeeeccccccCCc------------eeEEEccccCH------HHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence 5789999999752211 11100000000 00124588899999 4568888899999999999
Q ss_pred CCCeEE------Ee----------eeecCCceEEEEEccCCCEEEEEeCCCeEEEEEC-CCceeEEeccCCC--------
Q 008939 329 SKEQLI------CG----------GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM-EDRKVVAWGEGHN-------- 383 (548)
Q Consensus 329 ~~~~~~------~~----------~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~-~~~~~~~~~~~h~-------- 383 (548)
+...+- .. +..--..|..+.|+++|+++++-. =-+|++||+ ...+++.+++-|.
T Consensus 244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~ 322 (433)
T KOG1354|consen 244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCS 322 (433)
T ss_pred hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence 843211 00 011123578899999999998763 258999999 4556777666553
Q ss_pred ----CCe---EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 384 ----SWV---SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 384 ----~~V---~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
..| ..++|+- ++ .+++||+.....+++++..|..
T Consensus 323 lYEnD~IfdKFec~~sg-------~~------~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 323 LYENDAIFDKFECSWSG-------ND------SYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred HhhccchhheeEEEEcC-------Cc------ceEecccccceEEEecCCCCcc
Confidence 222 2456654 55 6899999999999999776643
No 273
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.99 E-value=4.4e-09 Score=99.91 Aligned_cols=166 Identities=18% Similarity=0.200 Sum_probs=115.1
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC
Q 008939 232 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 311 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g 311 (548)
.+..+..+|.++ +|+++..+....+++++...+.. +.+..... ....+++.|..+.
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~~----------------------kl~~~~~v-~~~~~ai~~~~~~ 119 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKGA----------------------KLLDVSCV-PKRPTAISFIRED 119 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCcc----------------------eeeeEeec-ccCcceeeeeecc
Confidence 344556677777 89998888888888887532200 00101000 0223344444444
Q ss_pred CEEEEE---ECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec-cCCCCCeE
Q 008939 312 TYLATV---GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG-EGHNSWVS 387 (548)
Q Consensus 312 ~~l~s~---~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~-~~h~~~V~ 387 (548)
..+..+ +....+.+|....+.+. .+-+|-..++.++|+||+++|+++..|..|++-....-..+..+ .||+..|.
T Consensus 120 ~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS 198 (390)
T KOG3914|consen 120 TSVLVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS 198 (390)
T ss_pred ceEEEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee
Confidence 444443 34445556665554443 34579999999999999999999999999999887765555544 47999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 388 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 388 ~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.++.-+ + +.|++++.|++|++||+++++++.++..
T Consensus 199 ~isl~~--------~------~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 199 TISLTD--------N------YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred eeeecc--------C------ceeeecCCCCcEEEEecccCCcccccch
Confidence 999975 3 5799999999999999999999877654
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.97 E-value=1.5e-06 Score=98.44 Aligned_cols=276 Identities=12% Similarity=0.074 Sum_probs=158.0
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeecc----CCc---ccCcceEEEEEecCCCcEE
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNK----DGS---VNNSRCTSVTWVPGGDGAF 246 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~----~~~---~~~~~v~~l~~~p~~~~~l 246 (548)
..+..+++++. ++..+++-..++.|++||.... .+........ ++. ..-.....|++.+++. .|
T Consensus 568 ~~P~gvavd~~--~g~lyVaDs~n~rI~v~d~~G~------~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn-~L 638 (1057)
T PLN02919 568 KFPGKLAIDLL--NNRLFISDSNHNRIVVTDLDGN------FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN-LL 638 (1057)
T ss_pred CCCceEEEECC--CCeEEEEECCCCeEEEEeCCCC------EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC-EE
Confidence 34556788875 2445555566778999997642 1111100000 000 1223468899999887 55
Q ss_pred EEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEE
Q 008939 247 VVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLR 324 (548)
Q Consensus 247 ~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~ 324 (548)
+++. ....|+++|+.... ...+.... ......... ....... -.....++|+| ++.++++...++.|+
T Consensus 639 YVaDt~n~~Ir~id~~~~~--V~tlag~G-~~g~~~~gg---~~~~~~~----ln~P~gVa~dp~~g~LyVad~~~~~I~ 708 (1057)
T PLN02919 639 YVADTENHALREIDFVNET--VRTLAGNG-TKGSDYQGG---KKGTSQV----LNSPWDVCFEPVNEKVYIAMAGQHQIW 708 (1057)
T ss_pred EEEeCCCceEEEEecCCCE--EEEEeccC-cccCCCCCC---hhhhHhh----cCCCeEEEEecCCCeEEEEECCCCeEE
Confidence 5554 45679999876421 00000000 000000000 0000000 02345799999 566667777889999
Q ss_pred EEeCCCCeEEEeeee---------------cCCceEEEEEccCCCE-EEEEeCCCeEEEEECCCceeEEec---------
Q 008939 325 VFDYSKEQLICGGKS---------------YYGALLCCAWSMDGKY-ILTGGEDDLVQVWSMEDRKVVAWG--------- 379 (548)
Q Consensus 325 vwd~~~~~~~~~~~~---------------~~~~v~~l~~spdg~~-l~sgs~dg~I~vwd~~~~~~~~~~--------- 379 (548)
+||..++.... +.+ .......++++|+++. +++-+.++.|++||++++......
T Consensus 709 v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~ 787 (1057)
T PLN02919 709 EYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN 787 (1057)
T ss_pred EEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence 99998775431 111 1123467999999984 455566799999999876532111
Q ss_pred ----cCC--------CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecC
Q 008939 380 ----EGH--------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFST 447 (548)
Q Consensus 380 ----~~h--------~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 447 (548)
-.+ -..-.+++|++ +| .++++-..++.|++||..++.+......... .+ .
T Consensus 788 l~~fG~~dG~g~~~~l~~P~Gvavd~-------dG------~LYVADs~N~rIrviD~~tg~v~tiaG~G~~----G~-~ 849 (1057)
T PLN02919 788 LFKFGDHDGVGSEVLLQHPLGVLCAK-------DG------QIYVADSYNHKIKKLDPATKRVTTLAGTGKA----GF-K 849 (1057)
T ss_pred cccccCCCCchhhhhccCCceeeEeC-------CC------cEEEEECCCCEEEEEECCCCeEEEEeccCCc----CC-C
Confidence 000 11235788888 88 6888888999999999988776543221000 00 0
Q ss_pred CCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 448 GSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 448 ~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
++ . ...++-.....|++++++ +++-+.++.|++||+.++.
T Consensus 850 dG--------------------------~---~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 850 DG--------------------------K---ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CC--------------------------c---ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 00 0 011223456789999974 7777889999999998765
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.95 E-value=7e-09 Score=105.13 Aligned_cols=253 Identities=17% Similarity=0.220 Sum_probs=167.7
Q ss_pred ceeEEeCCC--CCE-EEEecCCeEEEEEccCCCCCCeEEE-ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 133 MTNTNFDGK--GTY-IIFNVGDAIFISDLNSQDKDPIKSI-HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 133 v~~~~~~~~--g~~-l~~~~~d~v~vwd~~~~~~~~i~~~-~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
+....|++. -.+ ++..+...-.||++.....+.|.-+ ..|...++.+-|+|..++ .|++++.|-.|..||++..
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd--Vlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD--VLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc--ceeeccccccceeeeccCC
Confidence 334555543 333 4444444778999987665666544 457778999999998544 8999999999999999872
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
...+..... -...-..++|+-...+.++ .+....|++||++.+
T Consensus 148 ----~~p~ys~~~-------w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~g------------------------- 190 (1081)
T KOG0309|consen 148 ----HRPFYSTSS-------WRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKG------------------------- 190 (1081)
T ss_pred ----Ccceeeeec-------ccccCceeeecccCcchhh-hccCCceEEEeccCC-------------------------
Confidence 222222111 2455678999988874554 445578999999985
Q ss_pred CCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEe-eeecCCceEEEEEccCCCEEEE--EeCCCe
Q 008939 289 SNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICG-GKSYYGALLCCAWSMDGKYILT--GGEDDL 364 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~s--gs~dg~ 364 (548)
..|+..++.|...|+.++|.. ....+.+.+.|++|+.||.+....... ......+|..-.+-|-|+-.++ --.+..
T Consensus 191 s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~ 270 (1081)
T KOG0309|consen 191 STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNM 270 (1081)
T ss_pred CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCee
Confidence 356677777888999999976 445788999999999999975432111 1123345666666675542222 112224
Q ss_pred EEEEE---------CCC-ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 365 VQVWS---------MED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 365 I~vwd---------~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+.+++ ..+ .++++.|.||.+.|....|... -..+|........|++-+.|..+++|-+..
T Consensus 271 v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r---~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 271 VPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKR---KECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhc---ccccCCCCccceeEEEeecCCceEeeeccH
Confidence 44443 333 3689999999998877766431 111333334447899999999999998753
No 276
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.94 E-value=3.4e-06 Score=77.54 Aligned_cols=249 Identities=14% Similarity=0.106 Sum_probs=145.0
Q ss_pred EEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCC---CceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc
Q 008939 136 TNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNS---NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV 212 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~---~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~ 212 (548)
++.+.+|+++|.--+..|.|...++.=...+.+.....+ +=.-++|+|+ +.+|+.+...|+|+++|+...
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD---~tlLa~a~S~G~i~vfdl~g~---- 75 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD---CTLLAYAESTGTIRVFDLMGS---- 75 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC---CcEEEEEcCCCeEEEEecccc----
Confidence 456789999998777788888776543234555554333 3478999999 889999999999999998752
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCC-----CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGG-----DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~-----~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
.+............-...|..|.|.+.. ...|++-..+|.++-|-+...... .+ .
T Consensus 76 --~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q--~y---~------------- 135 (282)
T PF15492_consen 76 --ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ--GY---Q------------- 135 (282)
T ss_pred --eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC--cc---e-------------
Confidence 1111000000011135677788786543 125666777788887776321100 00 0
Q ss_pred CCCCeeEeee-cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEE---ccCCCEEEEEeCCC
Q 008939 288 KSNPIARWHI-CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAW---SMDGKYILTGGEDD 363 (548)
Q Consensus 288 ~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~---spdg~~l~sgs~dg 363 (548)
.+-...+.. +...|.++.|+|..++|++|+.... +++. -++....+++-.. .|.-+. ++..+|+
T Consensus 136 -e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~ 203 (282)
T PF15492_consen 136 -ENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQ-VTSSEDD 203 (282)
T ss_pred -eeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEE-ccccCcc
Confidence 011111222 3578999999999888888764322 1000 0011112222222 122211 2222222
Q ss_pred e------EEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 364 L------VQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 364 ~------I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
. -.+|.+-+.+...........|..|..+| || ..|++...+|.|.+|++..-.+......
T Consensus 204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-------dg------~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-------DG------SLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ccccccccceeeccceeeeeccccCCCceEEEEECC-------CC------CEEEEEEcCCeEEEEecCcchhhcccch
Confidence 2 13333333222222223567899999999 99 7999999999999999998776666554
No 277
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.90 E-value=4.1e-07 Score=82.11 Aligned_cols=228 Identities=14% Similarity=0.030 Sum_probs=142.7
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCC--CCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCccc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAK--DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVN 229 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~--~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 229 (548)
.+-+|++-...+ .+..+. ..+.|-|..- ...+|+.|+..|+..+|.+.+. +...+ .. -. +
T Consensus 53 sv~i~~~y~N~~-~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn--~~h~~-~c-d~-------s 114 (344)
T KOG4532|consen 53 SVPINSHYSNPK-GIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTN--DGHLY-QC-DV-------S 114 (344)
T ss_pred eeEeccccCCch-hhEEee------ecccccchHhhccccEEEeccccceeeeecccCc--cccee-ee-cc-------c
Confidence 677888775432 222222 2334444321 1447999999999999998752 11001 00 00 1
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC--CCeEEEEE
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ--GSINSIAF 307 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~ 307 (548)
...|+-+.=..+....+..++.|.++++.+++.+.. ....|. -.+.++++
T Consensus 115 nn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~----------------------------~~~~h~~~~~~ns~~~ 166 (344)
T KOG4532|consen 115 NNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN----------------------------KFAVHNQNLTQNSLHY 166 (344)
T ss_pred ccchhhhhhhcccccceeeccCCcceeEEEEecCcc----------------------------cceeeccccceeeeEE
Confidence 111111111112222467788888888888874211 011121 23788999
Q ss_pred CCCCCEEEEEECCCeEEEEeCCCC-e-EEE-eeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeE-Ee----c
Q 008939 308 STDGTYLATVGRDGYLRVFDYSKE-Q-LIC-GGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV-AW----G 379 (548)
Q Consensus 308 sp~g~~l~s~~~dg~v~vwd~~~~-~-~~~-~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~-~~----~ 379 (548)
++|++++++.+....|..|.+... + .+. ......+.-.+..|+.....+|++..||.+.|||++..... .+ -
T Consensus 167 snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstr 246 (344)
T KOG4532|consen 167 SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTR 246 (344)
T ss_pred cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccC
Confidence 999999999999999999998643 2 222 22334455668899999999999999999999999875322 21 1
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 380 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 380 ~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
..|.+.+..+.|+| -|. .-+|.-.-.=+.+.+-|+++....+.+.-
T Consensus 247 p~hnGa~R~c~Fsl-------~g~----lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 247 PHHNGAFRVCRFSL-------YGL----LDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred CCCCCceEEEEecC-------CCc----ceEEEEecCcceEEEEEcccCceeeEEec
Confidence 25899999999998 441 12444444557899999999877665543
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=7e-07 Score=88.26 Aligned_cols=306 Identities=14% Similarity=0.183 Sum_probs=182.4
Q ss_pred eeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc----------C-CcEEE
Q 008939 134 TNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN----------S-GDVYS 202 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~----------d-g~I~i 202 (548)
+.+.|+|.|.||++--...|.+|-=.+ .+.++.+. |+ .+.-+.|+|. ..+|++-+. + ..+.|
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~--f~r~~RF~-Hp-~Vq~idfSP~---EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGGES--FDRIQRFY-HP-GVQFIDFSPN---EKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecCcc--HHHHHhcc-CC-CceeeecCCc---cceEEEecCCccccCcccCCCceEEE
Confidence 578999999999987777999997554 33444433 33 5666777777 445665542 2 35999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
||+++.. .++..... +. ....-.-..|+.|+. ++|.-.. ..|.||+..+-.....
T Consensus 287 WDI~tG~---lkrsF~~~---~~---~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf~lld~-------------- 341 (698)
T KOG2314|consen 287 WDIATGL---LKRSFPVI---KS---PYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSFMLLDK-------------- 341 (698)
T ss_pred EEccccc---hhcceecc---CC---CccccceEEeccCCc-eeEEecc-ceEEEEecCceeeecc--------------
Confidence 9999831 11111111 11 111223468999998 7766555 5788998765211100
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-----CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEE
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-----GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
+++ .-..|..+.|+|.+++||.-... ..+.+..+-+++.+.+.+-+.-.=..+-|-.+|.+|+
T Consensus 342 -------Ksl-----ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 342 -------KSL-----KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC 409 (698)
T ss_pred -------ccc-----CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence 001 01678899999998888875422 3567777777777766554443334567888888887
Q ss_pred EEe----------CCCeEEEEECCCcee-EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC---CCeEEEE
Q 008939 358 TGG----------EDDLVQVWSMEDRKV-VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ---DTRLLLW 423 (548)
Q Consensus 358 sgs----------~dg~I~vwd~~~~~~-~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~---Dg~i~lw 423 (548)
.-- .--.+.|+.++.... +..+. -...|-..+|.| .| ..+++-+. ..++.+|
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP-------~g------dkF~vi~g~~~k~tvsfY 475 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEP-------HG------DKFAVISGNTVKNTVSFY 475 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeecc-------CC------CeEEEEEccccccceeEE
Confidence 532 122466777766543 33333 567888999999 77 34444332 2456666
Q ss_pred ECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EE--
Q 008939 424 DLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VL-- 499 (548)
Q Consensus 424 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~-- 499 (548)
.+++... +.+.+..+. ....+.|.|+|.+ ++
T Consensus 476 ~~e~~~~-------------------------------------------~~~lVk~~d--k~~~N~vfwsPkG~fvvva 510 (698)
T KOG2314|consen 476 AVETNIK-------------------------------------------KPSLVKELD--KKFANTVFWSPKGRFVVVA 510 (698)
T ss_pred EeecCCC-------------------------------------------chhhhhhhc--ccccceEEEcCCCcEEEEE
Confidence 6553110 011111221 2446789999974 33
Q ss_pred -EEECCCeEEEEeCCCCCccccCCCC----cEEEecCCCCceEeeecc
Q 008939 500 -TVCREGHIKIWMRPGVAESQSSSSE----TVLSTSSKDKPLLSSKVV 542 (548)
Q Consensus 500 -t~s~Dg~I~iW~~~~~~~~~~~~~~----~v~~~s~d~~~l~s~~~~ 542 (548)
-+|.-|.+.++|..-.......+.+ .-.-+-|.|+|++++...
T Consensus 511 ~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 511 ALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred EecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence 3346789999998753333332222 222678999999887543
No 279
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.88 E-value=6.5e-08 Score=92.06 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=113.7
Q ss_pred ceeEEeCCCCCEEEEecCC-eEEEEEccCCCC--CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecc
Q 008939 133 MTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK--DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQL 209 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~--~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~ 209 (548)
+....+++++++++.+..+ ...++++....+ +.+.... -+..++.+.|..+ ....+++...|.++.+|+-...
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~---~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIRE---DTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeec---cceEEEEeecCCceeeeeeccc
Confidence 3456778889999887665 666777765432 2233322 3345566666665 4457778888887777765421
Q ss_pred cccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 210 QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
....+.+. +|-..+++|+|+||++ .++++..|+.|+|-.....
T Consensus 141 ~~~~~~~l----------GhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~-------------------------- 183 (390)
T KOG3914|consen 141 SGRCEPIL----------GHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPAT-------------------------- 183 (390)
T ss_pred ccCcchhh----------hhhhhhheeeecCCCC-EEEEecCCceEEEEecCcc--------------------------
Confidence 11122222 4889999999999998 9999999999999877541
Q ss_pred CCeeEee-ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee
Q 008939 290 NPIARWH-ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG 337 (548)
Q Consensus 290 ~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~ 337 (548)
..+..|. +|+.-|..++.-++ ..|++++.|++|++||+.+++++.++
T Consensus 184 f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 184 FVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred cchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCccccc
Confidence 2233332 47788999988765 46899999999999999999987554
No 280
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.86 E-value=1.7e-05 Score=77.89 Aligned_cols=261 Identities=9% Similarity=0.024 Sum_probs=144.4
Q ss_pred CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc----------CCcEEEEEeeecccccccceeeee
Q 008939 151 DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN----------SGDVYSVSLRQQLQDVGKKLVGAH 220 (548)
Q Consensus 151 d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~----------dg~I~iwdl~~~~~~~~~~~~~~~ 220 (548)
+.|.|.|..+.+ .+..+... ..+..+ ++|+ +..|+++.. +..|.+||+.+. +....+
T Consensus 27 ~~v~ViD~~~~~--v~g~i~~G-~~P~~~-~spD---g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~------~~~~~i 93 (352)
T TIGR02658 27 TQVYTIDGEAGR--VLGMTDGG-FLPNPV-VASD---GSFFAHASTVYSRIARGKRTDYVEVIDPQTH------LPIADI 93 (352)
T ss_pred ceEEEEECCCCE--EEEEEEcc-CCCcee-ECCC---CCEEEEEeccccccccCCCCCEEEEEECccC------cEEeEE
Confidence 589999998843 66667643 345554 9998 666777766 678999999872 222222
Q ss_pred eeccCCc-ccCcceEEEEEecCCCcEEEEEe-C-CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee
Q 008939 221 HYNKDGS-VNNSRCTSVTWVPGGDGAFVVGH-A-DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI 297 (548)
Q Consensus 221 ~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~~-~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (548)
....+.+ ........++++|+|+ +|++.. . +..|.+.|+.... ... ....
T Consensus 94 ~~p~~p~~~~~~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~k-vv~-------------------------ei~v 146 (352)
T TIGR02658 94 ELPEGPRFLVGTYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKA-FVR-------------------------MMDV 146 (352)
T ss_pred ccCCCchhhccCccceEEECCCCC-EEEEecCCCCCEEEEEECCCCc-EEE-------------------------EEeC
Confidence 2111100 0123345789999999 666555 4 7899999998721 111 1110
Q ss_pred cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC-CeEE-Ee---eeecCCceE-EEEEcc-CCCEEEEEeCCCeEEEEEC
Q 008939 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK-EQLI-CG---GKSYYGALL-CCAWSM-DGKYILTGGEDDLVQVWSM 370 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-~~~~-~~---~~~~~~~v~-~l~~sp-dg~~l~sgs~dg~I~vwd~ 370 (548)
. +...-+..+++.. + .-+.||......+.+ ++.. .. +.....++. .-.|.+ +|+++.+..+ |.|.+.|+
T Consensus 147 p-~~~~vy~t~e~~~-~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~ 222 (352)
T TIGR02658 147 P-DCYHIFPTANDTF-F-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDL 222 (352)
T ss_pred C-CCcEEEEecCCcc-E-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEec
Confidence 0 1111111111111 1 112333333332221 1111 11 111000000 003455 8888888776 99999996
Q ss_pred CCc-----eeEEeccC-------CCCCeEEEEEecCCCCCCCCCCccceeEEEEE-Ee---------CCCeEEEEECCCC
Q 008939 371 EDR-----KVVAWGEG-------HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS-VG---------QDTRLLLWDLEMD 428 (548)
Q Consensus 371 ~~~-----~~~~~~~~-------h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s-~~---------~Dg~i~lwd~~~~ 428 (548)
... +....+.. ..+.+..++++| || .++.. .. ..+.|.++|..++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-------dg------~~lyV~~~~~~~~thk~~~~~V~ViD~~t~ 289 (352)
T TIGR02658 223 SSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-------AR------DRIYLLADQRAKWTHKTASRFLFVVDAKTG 289 (352)
T ss_pred CCCcceecceeeeccccccccccCCCcceeEEEcC-------CC------CEEEEEecCCccccccCCCCEEEEEECCCC
Confidence 443 23322221 223444589998 87 34443 21 1257999999988
Q ss_pred eEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe---EEEEE-CC
Q 008939 429 EIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTVC-RE 504 (548)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~---l~t~s-~D 504 (548)
+.+..+.. ...+..|+|+||+ |++.. .+
T Consensus 290 kvi~~i~v------------------------------------------------G~~~~~iavS~Dgkp~lyvtn~~s 321 (352)
T TIGR02658 290 KRLRKIEL------------------------------------------------GHEIDSINVSQDAKPLLYALSTGD 321 (352)
T ss_pred eEEEEEeC------------------------------------------------CCceeeEEECCCCCeEEEEeCCCC
Confidence 88776654 3467889999973 44444 67
Q ss_pred CeEEEEeCCCCC
Q 008939 505 GHIKIWMRPGVA 516 (548)
Q Consensus 505 g~I~iW~~~~~~ 516 (548)
+.|.+.|..+.+
T Consensus 322 ~~VsViD~~t~k 333 (352)
T TIGR02658 322 KTLYIFDAETGK 333 (352)
T ss_pred CcEEEEECcCCe
Confidence 889999987765
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=8.7e-07 Score=80.06 Aligned_cols=212 Identities=16% Similarity=0.078 Sum_probs=138.7
Q ss_pred CCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeee
Q 008939 141 KGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGA 219 (548)
Q Consensus 141 ~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~ 219 (548)
...+|+.++.. .+.+|.+.+.+ .......-+...++-+.=..+. ...+.+++.|.++++++++. +..+...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd~--~~~~~i~sndht~k~~~~~~---~s~~~~~-- 154 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCDL--KFPLNIASNDHTGKTMVVSG---DSNKFAV-- 154 (344)
T ss_pred cccEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhccc--ccceeeccCCcceeEEEEec---Cccccee--
Confidence 44567666554 89999988633 1233333344434333222221 33588899999999998875 2222221
Q ss_pred eeeccCCcccC--cceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee
Q 008939 220 HHYNKDGSVNN--SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI 297 (548)
Q Consensus 220 ~~~~~~~~~~~--~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (548)
|. -.++.+++++++. ++++.+....|..|.++.++...... ....
T Consensus 155 ---------h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~-----------------------~~a~ 201 (344)
T KOG4532|consen 155 ---------HNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENI-----------------------YEAP 201 (344)
T ss_pred ---------eccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeee-----------------------Eecc
Confidence 22 2378999999999 88888888999999998644322210 0111
Q ss_pred cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE-----EeeeecCCceEEEEEccCCC--EEEEEeCCCeEEEEEC
Q 008939 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI-----CGGKSYYGALLCCAWSMDGK--YILTGGEDDLVQVWSM 370 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~-----~~~~~~~~~v~~l~~spdg~--~l~sgs~dg~I~vwd~ 370 (548)
-+..=.+..|+.....+|+++.||++.|||++..... .+-..|.+.++.+.|++-|. +|+..-.-+.+++.|+
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 1234457789988889999999999999999865432 22345889999999998664 4555555689999999
Q ss_pred CCceeEEecc-------CCCC-CeEEEEEec
Q 008939 371 EDRKVVAWGE-------GHNS-WVSGVAFDS 393 (548)
Q Consensus 371 ~~~~~~~~~~-------~h~~-~V~~v~~~p 393 (548)
++++..+.+. .|.. .|..-.|+.
T Consensus 282 R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 282 RNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred ccCceeeEEecCccccccccccccccccccC
Confidence 9986544332 2332 366666654
No 282
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.83 E-value=6.5e-08 Score=86.80 Aligned_cols=207 Identities=17% Similarity=0.188 Sum_probs=121.1
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEE-----EC
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV-----GR 319 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-----~~ 319 (548)
-++++..||.+.+++.++.-......+.... + -.+.+....++.+.++ ..
T Consensus 103 ~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~------------------------~-~as~~~~~~~~~i~s~~~g~~n~ 157 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDKDLALMSRIPSIHS------------------------G-SASRKICRHGNSILSGGCGNWNA 157 (319)
T ss_pred ceEecCCCceEEEEechHHHhhhhhcccccc------------------------c-ccccceeecccEEecCCcceEee
Confidence 5899999999999998763222221111100 0 0011111223333332 12
Q ss_pred CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCCce-eEEeccCCCCCeEEEEEecCCCC
Q 008939 320 DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDRK-VVAWGEGHNSWVSGVAFDSYWSQ 397 (548)
Q Consensus 320 dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~~~-~~~~~~~h~~~V~~v~~~p~~~~ 397 (548)
-+..++|+++..+.+..-+.....|.+++-+|..+ ++++|++||.+-+||++... ++..+..|+.+|+.|.|+|.
T Consensus 158 ~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk--- 234 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK--- 234 (319)
T ss_pred ccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC---
Confidence 23566777764433222222223488999888654 66778889999999999875 44567789999999999993
Q ss_pred CCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCc
Q 008939 398 PNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSP 477 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~ 477 (548)
++ ..|+++++||.+..||..+.- +. +.......+.+.+.+- .-...++....+
T Consensus 235 ---~p------~~Lft~sedGslw~wdas~~~-l~-i~~~~s~~s~WLsgD~----------------v~s~i~i~~ll~ 287 (319)
T KOG4714|consen 235 ---NP------EHLFTCSEDGSLWHWDASTTF-LS-ISNQASVISSWLSGDP----------------VKSRIEITSLLP 287 (319)
T ss_pred ---Cc------hheeEecCCCcEEEEcCCCce-EE-ecCccccccccccCCc----------------ccceEeeecccc
Confidence 44 579999999999999987522 21 1111111111111111 000011111111
Q ss_pred eEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEe
Q 008939 478 LVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWM 511 (548)
Q Consensus 478 ~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~ 511 (548)
.-...|+++...-+.|++|+.-+.|.+.+
T Consensus 288 -----~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 288 -----SRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred -----ccceeeeeeeccCceEEeccccceEEEec
Confidence 12345777777778899999999998875
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=5.9e-07 Score=91.17 Aligned_cols=303 Identities=15% Similarity=0.144 Sum_probs=178.8
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccccee---eeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLV---GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
....|++|+.+ ..++++|+.||.+++..+.+...+..++-. .....+....+|+..|.-+.|+.+.+ .|-++.
T Consensus 15 vkL~c~~WNke---~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtSD 90 (1189)
T KOG2041|consen 15 VKLHCAEWNKE---SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTSD 90 (1189)
T ss_pred ceEEEEEEccc---CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-cccccC
Confidence 35689999988 779999999999999999885444333321 12223444557999999999998888 899999
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.+|-|.||-+-++.= +....+ ...+.-|.+++|..||..++.+..||.|.|=.++-
T Consensus 91 t~GlIiVWmlykgsW----~EEMiN--------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG 146 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSW----CEEMIN--------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG 146 (1189)
T ss_pred CCceEEEEeeecccH----HHHHhh--------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc
Confidence 999999999865210 000000 00126688999999999999999999998887763
Q ss_pred CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc-------eeEEec----cCCCCCeEEEEEecCCCCC-
Q 008939 331 EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-------KVVAWG----EGHNSWVSGVAFDSYWSQP- 398 (548)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~-------~~~~~~----~~h~~~V~~v~~~p~~~~~- 398 (548)
. .+..-.-.......+.|++|.+.++.+-.+|.+++||.+.. .+.... ......|-.+.|..-.-.|
T Consensus 147 N-RIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v 225 (1189)
T KOG2041|consen 147 N-RIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPV 225 (1189)
T ss_pred c-eecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccC
Confidence 3 33211111122346889999999999989999999998642 111111 1111235556664211111
Q ss_pred CCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCc---cccCCeeeecccCCCCceeecCCC
Q 008939 399 NSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQS---AHWDNVCPVGTLQPAPSMRDVPKL 475 (548)
Q Consensus 399 ~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~~~~g~~~~~~~~~d~~~~ 475 (548)
.+|. ..|+.+-..|.+.|..-........+..+-.+....++.+|.. ...+.. ..-..+.....+-.+-+
T Consensus 226 ~pdr------P~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~d-a~~~~d~n~v~Fysp~G 298 (1189)
T KOG2041|consen 226 PPDR------PRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSD-ADEPTDSNKVHFYSPYG 298 (1189)
T ss_pred CCCC------CEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCccc-ccCccccceEEEeccch
Confidence 1133 5788888888877764433332222222111222223333210 000000 00001111122233455
Q ss_pred CceEEeecCCCCeeEEEEeCCeE-EEEECCCeEEEEeC
Q 008939 476 SPLVAHRVHTEPLSGLIFTQESV-LTVCREGHIKIWMR 512 (548)
Q Consensus 476 ~~~~~~~~h~~~V~~l~fspd~l-~t~s~Dg~I~iW~~ 512 (548)
..+..++.....|+++.|--.+| +.-.-|+.|.+=++
T Consensus 299 ~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanI 336 (1189)
T KOG2041|consen 299 HIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANI 336 (1189)
T ss_pred hheEEEecCCceeeeeEEcCCceEEEEEecceEEEEee
Confidence 66777777778889888876542 33344555554443
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=1.2e-06 Score=89.50 Aligned_cols=191 Identities=16% Similarity=0.195 Sum_probs=113.2
Q ss_pred CceeEEeCCCCCE-EEEe-cC--C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEE-EcC--CcEEEE
Q 008939 132 SMTNTNFDGKGTY-IIFN-VG--D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIG-LNS--GDVYSV 203 (548)
Q Consensus 132 ~v~~~~~~~~g~~-l~~~-~~--d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g-~~d--g~I~iw 203 (548)
......|+|||+. +++. .. + .|+++|+.++..+ .+...+.......|+|+ +..|+.. ..+ .+|+++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---~lt~~~g~~~~~~~SPD---G~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---KIASSQGMLVVSDVSKD---GSKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---EEecCCCcEEeeEECCC---CCEEEEEEccCCCcEEEEE
Confidence 5668999999985 5542 22 3 7999999875533 33334445667889999 6555544 334 458888
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeee
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
|+.... .+++. . +........|+|||+.++++....+ .|+++|+..+......+
T Consensus 263 dl~~g~---~~~LT---~-------~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~----------- 318 (419)
T PRK04043 263 DTNTKT---LTQIT---N-------YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF----------- 318 (419)
T ss_pred ECCCCc---EEEcc---c-------CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-----------
Confidence 876521 11111 1 1222334579999996666665555 46666665421100000
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC---------CeEEEEeCCCCeEEEeeeecCCceEEEEEccC
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD---------GYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d---------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd 352 (548)
. +. ....|+|||++|+..... ..|.+.|+.+++... +... .......|+||
T Consensus 319 --------------~---g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPD 378 (419)
T PRK04043 319 --------------H---GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSD 378 (419)
T ss_pred --------------C---CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCC
Confidence 0 11 124899999998877654 368888988776432 3222 22335889999
Q ss_pred CCEEEEEeCC---CeEEEEECCC
Q 008939 353 GKYILTGGED---DLVQVWSMED 372 (548)
Q Consensus 353 g~~l~sgs~d---g~I~vwd~~~ 372 (548)
|+.|+....+ ..+.+.+++.
T Consensus 379 G~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 379 GGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCEEEEEEccCCcEEEEEEecCC
Confidence 9987765543 2366667654
No 285
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.80 E-value=3.1e-06 Score=83.12 Aligned_cols=282 Identities=12% Similarity=0.098 Sum_probs=167.8
Q ss_pred CCceeEEeCCCCCEEEEecC----------------CeEEEEEccCCCCCCeEEEecCCCC--ce-EEEecCCCCCCceE
Q 008939 131 TSMTNTNFDGKGTYIIFNVG----------------DAIFISDLNSQDKDPIKSIHFSNSN--PV-CHAFDQDAKDGHDL 191 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~----------------d~v~vwd~~~~~~~~i~~~~~~~~~--~~-~~~~~p~~~~~~~l 191 (548)
.-|..+.|+|.+++|.+-.. +.+.|||..++. .+..+...+.. .+ -+.|+.+.+ ++
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~--iv~sf~~~~q~~~~Wp~~k~s~~D~---y~ 146 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGM--IVFSFNGISQPYLGWPVLKFSIDDK---YV 146 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCce--eEeeccccCCcccccceeeeeecch---hh
Confidence 34667889999999886332 258999999865 66665554433 33 677877733 22
Q ss_pred EEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc-EEEE-----EeCCCcEEEEEcCCCCC
Q 008939 192 LIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG-AFVV-----GHADGNLYVYEKSKDGA 265 (548)
Q Consensus 192 ~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~-~l~s-----~~~dg~v~vwd~~~~~~ 265 (548)
+ --....++|+++...+...-.+ ..-...|....|+|.+++ .|+. ...++.+++|.+.....
T Consensus 147 A-Rvv~~sl~i~e~t~n~~~~p~~-----------~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~ 214 (561)
T COG5354 147 A-RVVGSSLYIHEITDNIEEHPFK-----------NLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV 214 (561)
T ss_pred h-hhccCeEEEEecCCccccCchh-----------hccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence 2 2244578999863211100000 012466888999998543 3333 45667888888764211
Q ss_pred CCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-----------CCCeEEEEeCCCCeEE
Q 008939 266 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-----------RDGYLRVFDYSKEQLI 334 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-----------~dg~v~vwd~~~~~~~ 334 (548)
.... ..-+..=..+.|.+.|++|+.-- ....+.++++....+.
T Consensus 215 -l~tk-------------------------~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~ 268 (561)
T COG5354 215 -LVTK-------------------------NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP 268 (561)
T ss_pred -eeee-------------------------eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc
Confidence 1110 00012223577777777665421 1246788888744333
Q ss_pred EeeeecCCceEEEEEccCCCEEEEEe--CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 335 CGGKSYYGALLCCAWSMDGKYILTGG--EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 335 ~~~~~~~~~v~~l~~spdg~~l~sgs--~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
.. ....++|...+|.|+++.+++.+ .+-.+.++|++.. .+..+ .+..-..+.|+| .+ ++++
T Consensus 269 V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp-------~~------r~il 331 (561)
T COG5354 269 VE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSP-------HE------RYIL 331 (561)
T ss_pred ee-ccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccC-------cc------cEEE
Confidence 22 25578999999999998776644 6889999999865 33333 344556788999 77 7888
Q ss_pred EEeCC---CeEEEEECCCCeEEe-eeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecC
Q 008939 413 SVGQD---TRLLLWDLEMDEIVV-PLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVP 473 (548)
Q Consensus 413 s~~~D---g~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~ 473 (548)
.++-| |.|.+||......+. .+.. .......+++++..-.-+..-.--..|..+.+||+-
T Consensus 332 ~agF~nl~gni~i~~~~~rf~~~~~~~~-~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 332 FAGFDNLQGNIEIFDPAGRFKVAGAFNG-LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred EecCCccccceEEeccCCceEEEEEeec-CCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 87765 789999988766555 3333 333334466666422222221222345667777764
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.73 E-value=4.6e-05 Score=72.41 Aligned_cols=212 Identities=21% Similarity=0.236 Sum_probs=132.1
Q ss_pred eEEeCC-CCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc
Q 008939 135 NTNFDG-KGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV 212 (548)
Q Consensus 135 ~~~~~~-~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~ 212 (548)
...|++ ++.++++.... .|+.|+..++. ...+.... +..+++... ...|+++... .+.++|+.+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~---~~~~~~~~--~~G~~~~~~---~g~l~v~~~~-~~~~~d~~~g---- 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE---VEVIDLPG--PNGMAFDRP---DGRLYVADSG-GIAVVDPDTG---- 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE---EEEEESSS--EEEEEEECT---TSEEEEEETT-CEEEEETTTT----
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe---EEEEecCC--CceEEEEcc---CCEEEEEEcC-ceEEEecCCC----
Confidence 467887 66666665544 99999988633 33333333 888888843 3456666654 4455576652
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC--------CcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD--------GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d--------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
++...... .........++++++.|+|. +.++.... |.|+.++... .
T Consensus 71 --~~~~~~~~-~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~--~------------------- 125 (246)
T PF08450_consen 71 --KVTVLADL-PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG--K------------------- 125 (246)
T ss_dssp --EEEEEEEE-ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS--E-------------------
T ss_pred --cEEEEeec-cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC--e-------------------
Confidence 22111111 11112467889999999998 55554433 4466665541 1
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEE-EEECCCeEEEEeCCCC-e-E-----EEeeeecCCceEEEEEccCCCEE
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLA-TVGRDGYLRVFDYSKE-Q-L-----ICGGKSYYGALLCCAWSMDGKYI 356 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~-s~~~dg~v~vwd~~~~-~-~-----~~~~~~~~~~v~~l~~spdg~~l 356 (548)
+..+...-...+.++|+|+++.|+ +-+..+.|..|++... . . ...+....+..-.+++..+|++.
T Consensus 126 -------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 126 -------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLW 198 (246)
T ss_dssp -------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EE
T ss_pred -------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEE
Confidence 111112225678999999998776 4556788999998532 1 1 12222222347789999999988
Q ss_pred EEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEe
Q 008939 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392 (548)
Q Consensus 357 ~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~ 392 (548)
++....+.|.++|.+ ++.+..+......+++++|-
T Consensus 199 va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 199 VADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred EEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 888889999999988 88887777555689999994
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=5.4e-08 Score=95.66 Aligned_cols=174 Identities=13% Similarity=0.195 Sum_probs=128.4
Q ss_pred ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
+|...|..++--.+.+ -|++++.|.+|++|.++.++....+ ......++.|+.+|+++.|
T Consensus 733 GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~t-------------------saCQfTY~aHkk~i~~igf 792 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGT-------------------SACQFTYQAHKKPIHDIGF 792 (1034)
T ss_pred CcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCcccc-------------------ceeeeEhhhccCcccceee
Confidence 4777888776655555 7999999999999999875543221 2245567889999999999
Q ss_pred CCCCCEEEEEECCCeEEEEeCCCCeEEEeeee--cCCceEEEEEcc--CCCEEEE-EeCCCeEEEEECCCceeEEecc--
Q 008939 308 STDGTYLATVGRDGYLRVFDYSKEQLICGGKS--YYGALLCCAWSM--DGKYILT-GGEDDLVQVWSMEDRKVVAWGE-- 380 (548)
Q Consensus 308 sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~~sp--dg~~l~s-gs~dg~I~vwd~~~~~~~~~~~-- 380 (548)
-.+-++++++ ||-|.+||.-.++++..+.. ..+.+..+..-+ +..+++. ++...+|+++|.+.++.+..++
T Consensus 793 L~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc 870 (1034)
T KOG4190|consen 793 LADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVC 870 (1034)
T ss_pred eeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEec
Confidence 9988887765 88999999987776553221 122222233223 3444444 4778999999999987666554
Q ss_pred ---CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 381 ---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 381 ---~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
+.+..+.+++..| .| ++++.+-..|+|.+.|.++|+.+..++.
T Consensus 871 na~~Pna~~R~iaVa~-------~G------N~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 871 NAPGPNALTRAIAVAD-------KG------NKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred cCCCCchheeEEEecc-------Cc------chhhHHhcCCcEEEEecCCCceeccCCc
Confidence 4567789999988 78 7999999999999999999998876654
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.69 E-value=3.1e-05 Score=79.15 Aligned_cols=236 Identities=10% Similarity=0.061 Sum_probs=130.7
Q ss_pred CEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeee
Q 008939 143 TYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHH 221 (548)
Q Consensus 143 ~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~ 221 (548)
..++++..+ .++-+|.++++ .+-+..... .+. -+|-- .+..++++..+|.|+.+|.++ ++.+.....
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~--~~W~~~~~~-~~~---ssP~v-~~~~v~v~~~~g~l~ald~~t-----G~~~W~~~~ 188 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGE--VAWQTKVAG-EAL---SRPVV-SDGLVLVHTSNGMLQALNESD-----GAVKWTVNL 188 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCC--CcccccCCC-cee---cCCEE-ECCEEEEECCCCEEEEEEccC-----CCEeeeecC
Confidence 444454444 88889988866 444433222 111 11111 144678888899999999876 343332211
Q ss_pred eccCC--cccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC
Q 008939 222 YNKDG--SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ 299 (548)
Q Consensus 222 ~~~~~--~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 299 (548)
..+.. .....++ .. +. .++.+..+|.++.+|..+ +......+...... ...+.
T Consensus 189 ~~~~~~~~~~~sP~----v~--~~-~v~~~~~~g~v~a~d~~~-G~~~W~~~~~~~~~-----------~~~~~------ 243 (394)
T PRK11138 189 DVPSLTLRGESAPA----TA--FG-GAIVGGDNGRVSAVLMEQ-GQLIWQQRISQPTG-----------ATEID------ 243 (394)
T ss_pred CCCcccccCCCCCE----EE--CC-EEEEEcCCCEEEEEEccC-ChhhheeccccCCC-----------ccchh------
Confidence 00000 0001111 11 22 567778889999999876 44333322111000 00000
Q ss_pred CCeEEEEECC--CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 300 GSINSIAFST--DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 300 ~~v~~~~~sp--~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
....+.-+| .+..++.++.+|.+..+|..+++.+..... .....+. .++..|+.++.++.+..+|.++++.+-
T Consensus 244 -~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 244 -RLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred -cccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 000111122 245677778899999999999988765432 1121222 245678888899999999999987654
Q ss_pred eccCCC-CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 378 WGEGHN-SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 378 ~~~~h~-~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
....-. ......... ++ +|..++.||.|.+.|..+++.+...+
T Consensus 319 ~~~~~~~~~~~sp~v~--------~g-------~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 319 SQSDLLHRLLTAPVLY--------NG-------YLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred cccccCCCcccCCEEE--------CC-------EEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 332111 112222222 44 67788999999999999998776554
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.68 E-value=2.7e-05 Score=79.52 Aligned_cols=212 Identities=13% Similarity=0.101 Sum_probs=123.0
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCce-EEEEEcC---CcEEEEEeeecccccccceeeeeeeccCCc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHD-LLIGLNS---GDVYSVSLRQQLQDVGKKLVGAHHYNKDGS 227 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~-l~~g~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~ 227 (548)
.|.+-|.+... .+.+.... ......|+|+ ++. ++..+.+ .+|+++|+.+.. .+.+..
T Consensus 170 ~l~~~d~dg~~---~~~~~~~~-~~~~p~wSpD---G~~~i~y~s~~~~~~~Iyv~dl~tg~---~~~lt~--------- 230 (419)
T PRK04043 170 NIVLADYTLTY---QKVIVKGG-LNIFPKWANK---EQTAFYYTSYGERKPTLYKYNLYTGK---KEKIAS--------- 230 (419)
T ss_pred eEEEECCCCCc---eeEEccCC-CeEeEEECCC---CCcEEEEEEccCCCCEEEEEECCCCc---EEEEec---------
Confidence 66776766532 22233233 6678899999 553 5544443 458888886521 111111
Q ss_pred ccCcceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
..+......|+||+..++++.+.++ .|+++|+... . ...+..+.+.....
T Consensus 231 -~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g-~--------------------------~~~LT~~~~~d~~p 282 (419)
T PRK04043 231 -SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK-T--------------------------LTQITNYPGIDVNG 282 (419)
T ss_pred -CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC-c--------------------------EEEcccCCCccCcc
Confidence 2344567789999985666655554 5666676542 1 11111111223345
Q ss_pred EECCCCCEEEEEECC-C--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC---------CeEEEEECCCc
Q 008939 306 AFSTDGTYLATVGRD-G--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED---------DLVQVWSMEDR 373 (548)
Q Consensus 306 ~~sp~g~~l~s~~~d-g--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d---------g~I~vwd~~~~ 373 (548)
.|+|||+.|+..+.. + .|.++|+.+++....... +. ....|+|||++|+..... ..|.+.|++++
T Consensus 283 ~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 799999988877642 3 588888887765333221 11 124899999988766543 36888898887
Q ss_pred eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC---CCeEEEEECCCC
Q 008939 374 KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ---DTRLLLWDLEMD 428 (548)
Q Consensus 374 ~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~---Dg~i~lwd~~~~ 428 (548)
... .+... .......|+| || +.|+-... ...|.+.++...
T Consensus 360 ~~~-~LT~~-~~~~~p~~SP-------DG------~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 360 YIR-RLTAN-GVNQFPRFSS-------DG------GSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CeE-ECCCC-CCcCCeEECC-------CC------CEEEEEEccCCcEEEEEEecCCC
Confidence 643 33322 2233578999 98 44444332 234667777554
No 290
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=8.1e-08 Score=89.54 Aligned_cols=126 Identities=13% Similarity=0.156 Sum_probs=100.4
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEeCCCC-----eEEEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCCc
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKE-----QLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDR 373 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~-----~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~ 373 (548)
+.|.++.|...++++..|...|.|.++|++.+ .+...+ -|...|+++..-. ++++|++.+.+|.|++||++--
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 67888999988899999999999999999865 233333 3888899998776 7889999999999999999876
Q ss_pred ee---EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 374 KV---VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 374 ~~---~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
++ +..++||...-.-+-++- . +.+ ..++++++|...+||.++.+.++.++...
T Consensus 332 K~~~~V~qYeGHvN~~a~l~~~v---~-~ee-------g~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 332 KCKKSVMQYEGHVNLSAYLPAHV---K-EEE-------GSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred hcccceeeeeccccccccccccc---c-ccc-------ceEEEccCeeEEEEEecccCceeeccCCC
Confidence 66 888888866544444432 0 012 37888999999999999999999888763
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.66 E-value=5.5e-07 Score=80.98 Aligned_cols=73 Identities=11% Similarity=0.188 Sum_probs=61.8
Q ss_pred CCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeE-EEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCC
Q 008939 300 GSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQL-ICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 300 ~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~ 372 (548)
..|.+++-+| +.+.+++|+.||.+-+||.+.... +..++.|+.++..+.|+| ++..|+++++||.+-.||-.+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3488999999 456788889999999999987754 344788999999999999 557899999999999999874
No 292
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=2.2e-06 Score=87.20 Aligned_cols=265 Identities=14% Similarity=0.170 Sum_probs=165.6
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
...-||.++|..+.|+.+...+-++..+ .|.||-+-.+.+-.-..-.-.++-+.++.|+.+ |..+.+...||.|.+
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d---G~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD---GTKICIVYEDGAVIV 141 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC---CcEEEEEEccCCEEE
Confidence 4567899999999999988888776655 899999887653111011124556788888888 778999999999887
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
=.++. .++ |.++. ...-...+.|++|.+ .++.+-..|.+.+||...+- ...+..... ....
T Consensus 142 GsvdG------NRI-----wgKeL--kg~~l~hv~ws~D~~-~~Lf~~ange~hlydnqgnF--~~Kl~~~c~---Vn~t 202 (1189)
T KOG2041|consen 142 GSVDG------NRI-----WGKEL--KGQLLAHVLWSEDLE-QALFKKANGETHLYDNQGNF--ERKLEKDCE---VNGT 202 (1189)
T ss_pred Eeecc------cee-----cchhc--chheccceeecccHH-HHHhhhcCCcEEEecccccH--HHhhhhceE---Eeee
Confidence 77664 112 12221 122345788999998 78888889999999975321 111110000 0000
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
..-.+....+.......++..- .-||...|+++...|.+.|..-+.......+. ..-.+....|+++|..|++++.+
T Consensus 203 g~~s~~~~kia~i~w~~g~~~~--v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 203 GIFSNFPTKIAEIEWNTGPYQP--VPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred eeecCCCccccceeeccCcccc--CCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCc
Confidence 0000000001111111122111 13577889999999999988665433222222 22568889999999999998864
Q ss_pred C---------eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 363 D---------LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 363 g---------~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
. .|++|.. -|+.+.+++-....|++++|-. .| .+++ -..|+.|.+=+++-.
T Consensus 280 ~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg-------~g------LriA-~AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 280 SDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEG-------TG------LRIA-IAVDSFIYFANIRPE 339 (1189)
T ss_pred ccccCccccceEEEecc-chhheEEEecCCceeeeeEEcC-------Cc------eEEE-EEecceEEEEeeccc
Confidence 2 4555543 3677788888889999999954 44 3443 345788888887754
No 293
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.63 E-value=1.3e-05 Score=78.06 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=112.2
Q ss_pred CCCeEEEEECCCCCEEEEEECCC-eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 299 QGSINSIAFSTDGTYLATVGRDG-YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 299 ~~~v~~~~~sp~g~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
.+.|.-..+.-+++-++.|..|| .|-|||.++++... +...-+.|.++..+|+|++++++.....|-+.|++++....
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~ 437 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL 437 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE
Confidence 36688788887888899999999 89999999887554 45566889999999999999999988999999999998766
Q ss_pred eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC----CeEEEEECCCCeEEeeeecCCCCCCceecCCCC
Q 008939 378 WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD----TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ 450 (548)
Q Consensus 378 ~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (548)
.-+...+-|+.+.|+| ++ ++|+-+--+ ..|+++|+..++............+++|.+++.
T Consensus 438 idkS~~~lItdf~~~~-------ns------r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~r 501 (668)
T COG4946 438 IDKSEYGLITDFDWHP-------NS------RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGR 501 (668)
T ss_pred ecccccceeEEEEEcC-------Cc------eeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCc
Confidence 6666778899999999 88 677766554 469999999988776555445667777777774
No 294
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=2e-07 Score=91.72 Aligned_cols=244 Identities=11% Similarity=0.088 Sum_probs=153.0
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEec-CCeEEEEEccCCCC-C----CeEEEecCCCCceEEEecCCCCCCceEEEEEcC
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNV-GDAIFISDLNSQDK-D----PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS 197 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~-~d~v~vwd~~~~~~-~----~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d 197 (548)
-.+.||.+.|..+.--.+..-+++++ +++|++|.++.... . .-.+...|+..+..+.|-.+ .-.+++.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-----lr~i~ScD 803 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-----LRSIASCD 803 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-----cceeeecc
Confidence 35678888887775544444444544 45999999985331 1 11222336778888888765 23567889
Q ss_pred CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC-CCcEEEEE-eCCCcEEEEEcCCCCCCCCCcccccc
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG-GDGAFVVG-HADGNLYVYEKSKDGAGDSSFPVIKD 275 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~-~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~ 275 (548)
|.|.+||.-- ++.+.+.....+ .+.+..+...++ ...+++.+ +...+|+++|.+..
T Consensus 804 ~giHlWDPFi-----gr~Laq~~dapk-----~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc------------ 861 (1034)
T KOG4190|consen 804 GGIHLWDPFI-----GRLLAQMEDAPK-----EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC------------ 861 (1034)
T ss_pred Ccceeecccc-----cchhHhhhcCcc-----cCCCceeEecccCcchheeeeccchhhheeeecccc------------
Confidence 9999999643 222221111111 223333444443 22244444 78899999999863
Q ss_pred cceeeeecCCCCCCCCeeEeeec-----CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEc
Q 008939 276 QTQFSVAHPRYSKSNPIARWHIC-----QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWS 350 (548)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~s 350 (548)
..+..|+.+ ++.+.+++.-+.|+.++.+-..|.|.+.|.++|+.+..++.....+..++ .
T Consensus 862 --------------e~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-a 926 (1034)
T KOG4190|consen 862 --------------EWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-A 926 (1034)
T ss_pred --------------cceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-C
Confidence 223333332 36688999999999999999999999999999999887776555555454 3
Q ss_pred cCCCEEEEEeCCCeEEE-EECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 008939 351 MDGKYILTGGEDDLVQV-WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424 (548)
Q Consensus 351 pdg~~l~sgs~dg~I~v-wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd 424 (548)
|..+.|+....|..+.+ |..-++......+....+..-+.- -| .-|+++.....+.+|-
T Consensus 927 psdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqs---------vg------pSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 927 PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQS---------VG------PSLVTAQNGNILGVYA 986 (1034)
T ss_pred chhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhc---------cC------ceeEEeccCcEEEEEe
Confidence 55567888878999998 987777655554433332221110 22 3566666666666663
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=2.7e-07 Score=86.16 Aligned_cols=175 Identities=15% Similarity=0.188 Sum_probs=122.5
Q ss_pred EecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEE
Q 008939 180 AFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYE 259 (548)
Q Consensus 180 ~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd 259 (548)
+|+-+.. +-. ++.+.+-.|.+-|+++..++. .. .++.|.++.|...++ ++..|+.+|.|.++|
T Consensus 218 awSlni~-gyh-fs~G~sqqv~L~nvetg~~qs-------f~-------sksDVfAlQf~~s~n-Lv~~GcRngeI~~iD 280 (425)
T KOG2695|consen 218 AWSLNIM-GYH-FSVGLSQQVLLTNVETGHQQS-------FQ-------SKSDVFALQFAGSDN-LVFNGCRNGEIFVID 280 (425)
T ss_pred hhhhccc-eee-ecccccceeEEEEeecccccc-------cc-------cchhHHHHHhcccCC-eeEecccCCcEEEEE
Confidence 7775533 222 445556678888888732211 11 467888999998888 999999999999999
Q ss_pred cCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeE---EE
Q 008939 260 KSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQL---IC 335 (548)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~---~~ 335 (548)
++...+. +..+.++ --|...|+++..-. ++++|++.+.+|.|++||++.-++ +.
T Consensus 281 LR~rnqG---------------------~~~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~ 338 (425)
T KOG2695|consen 281 LRCRNQG---------------------NGWCAQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVM 338 (425)
T ss_pred eeecccC---------------------CCcceEE-EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccccee
Confidence 9863111 0111222 12568899988766 788999999999999999987766 77
Q ss_pred eeeecCCceE--EEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC----CCCeEEEEEec
Q 008939 336 GGKSYYGALL--CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH----NSWVSGVAFDS 393 (548)
Q Consensus 336 ~~~~~~~~v~--~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h----~~~V~~v~~~p 393 (548)
++.+|-..-. -+...+....++++++|...+||.++.+..+.++.-. +..+..++|..
T Consensus 339 qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 339 QYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 7777744222 2233455568888999999999999999998887632 23455677754
No 296
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.59 E-value=3.4e-05 Score=83.58 Aligned_cols=224 Identities=16% Similarity=0.194 Sum_probs=134.7
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 253 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg 253 (548)
..+..+.|-.+ .+.++++...|.|.+.|.++....... .....|.+++|+||++ .++....++
T Consensus 69 ~~i~s~~fl~d---~~~i~v~~~~G~iilvd~et~~~eivg-------------~vd~GI~aaswS~Dee-~l~liT~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFLAD---TNSICVITALGDIILVDPETLELEIVG-------------NVDNGISAASWSPDEE-LLALITGRQ 131 (1265)
T ss_pred cceEEEEEecc---cceEEEEecCCcEEEEcccccceeeee-------------eccCceEEEeecCCCc-EEEEEeCCc
Confidence 47788888877 778999999999999987763211111 1467899999999999 888888888
Q ss_pred cEEEEEcCCCCCCCCCc----------ccc---cccceeeeecCCCCCCCCeeEee------ecCCCeEEEEECCCCCEE
Q 008939 254 NLYVYEKSKDGAGDSSF----------PVI---KDQTQFSVAHPRYSKSNPIARWH------ICQGSINSIAFSTDGTYL 314 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~----------~~~---~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~sp~g~~l 314 (548)
++.+-+..-.--....+ ... +...+|....++.....++...+ .+ ..=+.+.|--||+++
T Consensus 132 tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~f 210 (1265)
T KOG1920|consen 132 TLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYF 210 (1265)
T ss_pred EEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhc-cCCceEEEccCCcEE
Confidence 88776543211111111 000 00111111111111111111111 11 122358899999999
Q ss_pred EEEE----CC-CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe---CCCeEEEEECCC---ceeEEeccCCC
Q 008939 315 ATVG----RD-GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG---EDDLVQVWSMED---RKVVAWGEGHN 383 (548)
Q Consensus 315 ~s~~----~d-g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs---~dg~I~vwd~~~---~~~~~~~~~h~ 383 (548)
|+.. .+ +.|+|||-+ +.+-..-..-.+.=.+++|-|.|.++++-. .|+.|.++--+- ++.+..+....
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 9832 23 789999987 554333333334445799999999888743 455788886432 22233333344
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEE---EeCCCeEEEEECCCCe
Q 008939 384 SWVSGVAFDSYWSQPNSDGTAETVMYRFGS---VGQDTRLLLWDLEMDE 429 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s---~~~Dg~i~lwd~~~~~ 429 (548)
..|..++|+. ++ ..|+. ......|++|-+..-.
T Consensus 290 ~~ve~L~Wns-------~s------diLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 290 KEVEELAWNS-------NS------DILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cchheeeecC-------CC------CceeeeecccccceEEEEEecCeE
Confidence 5599999987 76 45555 4555669999987654
No 297
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.59 E-value=6.6e-05 Score=76.75 Aligned_cols=190 Identities=17% Similarity=0.112 Sum_probs=108.3
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEE-EEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTS-VTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 266 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~ 266 (548)
+..++++..+|.|+.+|.++ ++.+..... ...+.+ .... + . .++++..+|.|+.+|..+ ++.
T Consensus 120 ~~~v~v~~~~g~l~ald~~t-----G~~~W~~~~--------~~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~t-G~~ 182 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAED-----GEVAWQTKV--------AGEALSRPVVS-D-G-LVLVHTSNGMLQALNESD-GAV 182 (394)
T ss_pred CCEEEEEcCCCEEEEEECCC-----CCCcccccC--------CCceecCCEEE-C-C-EEEEECCCCEEEEEEccC-CCE
Confidence 45788899999999999876 333322111 111111 1111 3 3 677788899999999886 443
Q ss_pred CCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCC----
Q 008939 267 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG---- 342 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~---- 342 (548)
...++.... .........++ . .+..++.++.++.+..+|..+++.+........
T Consensus 183 ~W~~~~~~~----------------~~~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~ 240 (394)
T PRK11138 183 KWTVNLDVP----------------SLTLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT 240 (394)
T ss_pred eeeecCCCC----------------cccccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCcc
Confidence 333321100 00000000111 1 123566677889999999999887655431110
Q ss_pred ---ceEEEEEcc--CCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 343 ---ALLCCAWSM--DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 343 ---~v~~l~~sp--dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
....+..+| .+..++.++.++.+..+|..+++.+-... .. ....+... ++ .+..++.|
T Consensus 241 ~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~~-~~~~~~~~--------~~-------~vy~~~~~ 303 (394)
T PRK11138 241 EIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-YG-SVNDFAVD--------GG-------RIYLVDQN 303 (394)
T ss_pred chhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-CC-CccCcEEE--------CC-------EEEEEcCC
Confidence 011111122 24467777789999999999998764432 11 11122222 33 67777889
Q ss_pred CeEEEEECCCCeEEee
Q 008939 418 TRLLLWDLEMDEIVVP 433 (548)
Q Consensus 418 g~i~lwd~~~~~~~~~ 433 (548)
+.|..+|..+++.+..
T Consensus 304 g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 304 DRVYALDTRGGVELWS 319 (394)
T ss_pred CeEEEEECCCCcEEEc
Confidence 9999999999887643
No 298
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.59 E-value=1.2e-06 Score=80.74 Aligned_cols=254 Identities=15% Similarity=0.210 Sum_probs=152.6
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC----cccccccceeeeecCCCCCCCCeeEeeecCCCeEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS----FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINS 304 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (548)
....|+++.|...|. +|++|...|.|.+|.-......... ++.....- ..+..+.. ...|..
T Consensus 25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EF------------DYLkSlei-eEKin~ 90 (460)
T COG5170 25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEF------------DYLKSLEI-EEKINA 90 (460)
T ss_pred ccceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccch------------hhhhhccH-HHHhhh
Confidence 467899999999988 9999999999999987653222211 11111000 00111111 146788
Q ss_pred EEECCCC--CEEEEEECCCeEEEEeCCCCeE-------------------------------------EEe------eee
Q 008939 305 IAFSTDG--TYLATVGRDGYLRVFDYSKEQL-------------------------------------ICG------GKS 339 (548)
Q Consensus 305 ~~~sp~g--~~l~s~~~dg~v~vwd~~~~~~-------------------------------------~~~------~~~ 339 (548)
+.|..++ ..++..+.|.+|++|.+....+ +.. -..
T Consensus 91 I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNa 170 (460)
T COG5170 91 IEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANA 170 (460)
T ss_pred eeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccc
Confidence 8887643 4677778999999998753210 000 023
Q ss_pred cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce---eEEeccCCC-----CCeEEEEEecCCCCCCCCCCccceeEEE
Q 008939 340 YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK---VVAWGEGHN-----SWVSGVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 340 ~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~---~~~~~~~h~-----~~V~~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
|.-.|+++.+..|.+.++++ .|=.|.+|+++-.. -+.-++.|. .-|++..|+| .. +..+
T Consensus 171 H~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp-------~~-----cn~f 237 (460)
T COG5170 171 HPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHP-------EM-----CNVF 237 (460)
T ss_pred ceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCH-------hH-----cceE
Confidence 55568889999998888776 67899999986421 233344453 5688899998 21 2577
Q ss_pred EEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEE
Q 008939 412 GSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGL 491 (548)
Q Consensus 412 ~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l 491 (548)
.-.+..|.|++-|++...+...-.. ......+ ...+.-+.+-...|..+
T Consensus 238 mYSsSkG~Ikl~DlRq~alcdn~~k-----lfe~~~D--------------------------~v~~~ff~eivsSISD~ 286 (460)
T COG5170 238 MYSSSKGEIKLNDLRQSALCDNSKK-----LFELTID--------------------------GVDVDFFEEIVSSISDF 286 (460)
T ss_pred EEecCCCcEEehhhhhhhhccCchh-----hhhhccC--------------------------cccchhHHHHhhhhcce
Confidence 7778889999999985432110000 0000000 00011122334678999
Q ss_pred EEeCCe-EEEEECCCeEEEEeCCCCCcccc---------------CCCCcEE-----EecCCCCceEeee
Q 008939 492 IFTQES-VLTVCREGHIKIWMRPGVAESQS---------------SSSETVL-----STSSKDKPLLSSK 540 (548)
Q Consensus 492 ~fspd~-l~t~s~Dg~I~iW~~~~~~~~~~---------------~~~~~v~-----~~s~d~~~l~s~~ 540 (548)
.|++++ ++.+-.=-+|+|||+.-.+-... -....++ .+|.|++.+.+|.
T Consensus 287 kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs 356 (460)
T COG5170 287 KFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGS 356 (460)
T ss_pred EEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccc
Confidence 999986 55555557899999765542211 1223343 6777777777764
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.58 E-value=1.6e-05 Score=73.25 Aligned_cols=210 Identities=13% Similarity=0.115 Sum_probs=112.9
Q ss_pred eeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEec-------CCCCceEEEecCCCCC---CceEEEEEcCCcEEE
Q 008939 134 TNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHF-------SNSNPVCHAFDQDAKD---GHDLLIGLNSGDVYS 202 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~-------~~~~~~~~~~~p~~~~---~~~l~~g~~dg~I~i 202 (548)
..++|+||+.+++++... +|+|+|+.... +..+.- -...+..+.|-+...+ ...|++-..+|.++-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~---lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSE---LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccce---eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 579999999999998776 99999998532 111111 1123444455443211 235777788888887
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc-EEEEEcCCCCCCCCCcccccccceeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN-LYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
|-+.....+..+.... ..+.. .....|+++.|+|..+ +|++|+.... -..+...
T Consensus 124 y~vs~gt~q~y~e~hs-fsf~~---~yp~Gi~~~vy~p~h~-LLlVgG~~~~~~~~s~a~-------------------- 178 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHS-FSFSS---HYPHGINSAVYHPKHR-LLLVGGCEQNQDGMSKAS-------------------- 178 (282)
T ss_pred EEEEcccCCcceeeEE-EEecc---cCCCceeEEEEcCCCC-EEEEeccCCCCCcccccc--------------------
Confidence 7664211111111111 11111 1467899999999988 6666654322 0000000
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEE-CCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAF-STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~-sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
..-+..|+.-.+......+ +.+...-...... .+|.+-+.+...........|..+..||||++||+..
T Consensus 179 -------~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~---~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih 248 (282)
T PF15492_consen 179 -------SCGLTAWRILSDSPYYKQVTSSEDDITASSKRR---GLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH 248 (282)
T ss_pred -------ccCceEEEEcCCCCcEEEccccCcccccccccc---ceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE
Confidence 0112222222222221111 1111111111122 2333322222222233467899999999999999999
Q ss_pred CCCeEEEEECCCceeEEeccC
Q 008939 361 EDDLVQVWSMEDRKVVAWGEG 381 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~~ 381 (548)
.+|.|.+|++-.-++...+.-
T Consensus 249 ~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 249 FSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred cCCeEEEEecCcchhhcccch
Confidence 999999999988776665553
No 300
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.58 E-value=9.3e-07 Score=81.40 Aligned_cols=243 Identities=15% Similarity=0.206 Sum_probs=146.5
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeee------eeeccCCcccCcceEEEEEecCCC-cE
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGA------HHYNKDGSVNNSRCTSVTWVPGGD-GA 245 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~l~~~p~~~-~~ 245 (548)
.+.++.+.|... |.+|++|...|.|.+|.-+....-..+-.... ..+.+... ....|..|.|..++. +.
T Consensus 26 ad~ItaVefd~t---g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSle-ieEKin~I~w~~~t~r~h 101 (460)
T COG5170 26 ADKITAVEFDET---GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLE-IEEKINAIEWFDDTGRNH 101 (460)
T ss_pred cceeeEEEeccc---cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhcc-HHHHhhheeeecCCCcce
Confidence 346778888877 88999999999999997654210001111111 11111211 356789999976553 47
Q ss_pred EEEEeCCCcEEEEEcCCCC-------CCCCCccccccc-----ceeeee----cCCCCCCCCeeEe-eecCCCeEEEEEC
Q 008939 246 FVVGHADGNLYVYEKSKDG-------AGDSSFPVIKDQ-----TQFSVA----HPRYSKSNPIARW-HICQGSINSIAFS 308 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~-------~~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~-~~h~~~v~~~~~s 308 (548)
|+....|.+|++|.+.... .....+.....+ ...... |.......|.+.. ..|..-|+++.|.
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 8888899999999986421 000001000000 000000 0000012233333 5677889999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCe---EEEeeeecC-----CceEEEEEccCC-CEEEEEeCCCeEEEEECCCcee----
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQ---LICGGKSYY-----GALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKV---- 375 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~---~~~~~~~~~-----~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~~---- 375 (548)
.|.+.++++ .|=.|.+|+++.-. .+..++.|. .-|++..|+|.. ..+.-.+..|.|++.|++....
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 998888876 46789999986432 233344443 357888899864 3556667789999999984321
Q ss_pred ------------EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe-EEeee
Q 008939 376 ------------VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE-IVVPL 434 (548)
Q Consensus 376 ------------~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~-~~~~~ 434 (548)
+..+.+-...|..+.|++ +| ++|++-. --+|+|||+++.+ ++.++
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~-------ng------ryIlsRd-yltvkiwDvnm~k~pikTi 318 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSD-------NG------RYILSRD-YLTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcC-------CC------cEEEEec-cceEEEEecccccCCceee
Confidence 111223346788999999 88 6666544 3689999998753 44444
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=9.9e-06 Score=83.41 Aligned_cols=243 Identities=15% Similarity=0.188 Sum_probs=167.7
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
+...-..+.|+|.| +|+-|+. ..|.+-|..+ .+.++.+..|+..|+.+.|.
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s--------------------------~q~iqsie~h~s~V~~VrWa 64 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRS--------------------------LQLIQSIELHQSAVTSVRWA 64 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhh--------------------------hhhhhccccCccceeEEEec
Confidence 44456789999998 6777765 4678888765 34566677788899999997
Q ss_pred CCC------------CEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc---CC-CEEEEEeCCCeEEEEECCC
Q 008939 309 TDG------------TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM---DG-KYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 309 p~g------------~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp---dg-~~l~sgs~dg~I~vwd~~~ 372 (548)
|.. -+||++...|.|.+||...+..+..+..|..++..++|-+ +. ..|++-..-..|.+|+..+
T Consensus 65 p~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt 144 (1062)
T KOG1912|consen 65 PAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT 144 (1062)
T ss_pred cCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence 631 2477788889999999999999999999999999999976 33 3566666678999999999
Q ss_pred ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC-------CeEEeeeecCCCC-----
Q 008939 373 RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM-------DEIVVPLRRGPLG----- 440 (548)
Q Consensus 373 ~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~-------~~~~~~~~~~~~~----- 440 (548)
|+.+-..........++.++|+ |. +.+..-+..|.+.+-+.-. ++..+ +..+...
T Consensus 145 G~k~Wk~~ys~~iLs~f~~DPf------d~------rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~le 211 (1062)
T KOG1912|consen 145 GEKFWKYDYSHEILSCFRVDPF------DS------RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLE 211 (1062)
T ss_pred CceeeccccCCcceeeeeeCCC------Cc------ceEEEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhh
Confidence 9988777666677888999996 55 5666666677777665421 11111 1111000
Q ss_pred ------CCceecCCC-----------CccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC----eEE
Q 008939 441 ------GSPTFSTGS-----------QSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE----SVL 499 (548)
Q Consensus 441 ------~~~~~~~~~-----------~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd----~l~ 499 (548)
....-.+.+ ...+|.+.+ .-.+...+.++|++-..++.......+.+.-+.+-|+ .|+
T Consensus 212 re~at~ns~ts~~~sa~fity~a~faf~p~~rn~l-fi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lf 290 (1062)
T KOG1912|consen 212 RETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL-FITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALF 290 (1062)
T ss_pred hhhhccccccCCCcchhHHHHHHhhhcChhhhceE-EEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEE
Confidence 000000000 123444433 3345667778888777777777666666666777774 599
Q ss_pred EEECCCeEEEEeCCC
Q 008939 500 TVCREGHIKIWMRPG 514 (548)
Q Consensus 500 t~s~Dg~I~iW~~~~ 514 (548)
+.-.||.+.||-...
T Consensus 291 clH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 291 CLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEecCCeEEEEEeec
Confidence 999999999998665
No 302
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.53 E-value=3.6e-07 Score=59.13 Aligned_cols=39 Identities=23% Similarity=0.541 Sum_probs=36.9
Q ss_pred CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 008939 331 EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 369 (548)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd 369 (548)
++++..+++|.+.|.+|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.51 E-value=0.00012 Score=69.10 Aligned_cols=220 Identities=21% Similarity=0.243 Sum_probs=123.0
Q ss_pred eEEEEEccCCCCCCeEEEecCC--CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCccc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSN--SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVN 229 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~--~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 229 (548)
.|..||..+++ .+-.....+ ....+... +. +..++++..++.|+.||..+ ++.+... .. .....
T Consensus 4 ~l~~~d~~tG~--~~W~~~~~~~~~~~~~~~~-~~---~~~v~~~~~~~~l~~~d~~t-----G~~~W~~-~~--~~~~~ 69 (238)
T PF13360_consen 4 TLSALDPRTGK--ELWSYDLGPGIGGPVATAV-PD---GGRVYVASGDGNLYALDAKT-----GKVLWRF-DL--PGPIS 69 (238)
T ss_dssp EEEEEETTTTE--EEEEEECSSSCSSEEETEE-EE---TTEEEEEETTSEEEEEETTT-----SEEEEEE-EC--SSCGG
T ss_pred EEEEEECCCCC--EEEEEECCCCCCCccceEE-Ee---CCEEEEEcCCCEEEEEECCC-----CCEEEEe-ec--ccccc
Confidence 56666766544 555554422 12221122 12 55788889999999999866 3333221 11 11111
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCc-ccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSF-PVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
.. ... .+. .++++..++.|+.+|..+ +...... ...... ......+...
T Consensus 70 ~~-----~~~-~~~-~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~----------------------~~~~~~~~~~ 119 (238)
T PF13360_consen 70 GA-----PVV-DGG-RVYVGTSDGSLYALDAKT-GKVLWSIYLTSSPP----------------------AGVRSSSSPA 119 (238)
T ss_dssp SG-----EEE-ETT-EEEEEETTSEEEEEETTT-SCEEEEEEE-SSCT----------------------CSTB--SEEE
T ss_pred ce-----eee-ccc-ccccccceeeeEecccCC-cceeeeeccccccc----------------------cccccccCce
Confidence 11 122 233 567777888999999776 3322221 100000 0011112222
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCc----------eEEEEEccCCCEEEEEeCCCe-EEEEECCCceeEE
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA----------LLCCAWSMDGKYILTGGEDDL-VQVWSMEDRKVVA 377 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~----------v~~l~~spdg~~l~sgs~dg~-I~vwd~~~~~~~~ 377 (548)
.++..++.+..++.|..+|+++|+.+......... +..-....++ .++.+..++. +.+ |+++++.+-
T Consensus 120 ~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w 197 (238)
T PF13360_consen 120 VDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLW 197 (238)
T ss_dssp EETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEE
T ss_pred EecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEE
Confidence 23778888888999999999999998877654322 1122222344 6777777775 556 999998663
Q ss_pred eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 378 WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 378 ~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
... ...+..+. .+ ++ ..|+.++.++.|..||+++++.+..
T Consensus 198 ~~~--~~~~~~~~-~~-------~~------~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 198 SKP--ISGIYSLP-SV-------DG------GTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEC--SS-ECECE-EC-------CC------TEEEEEETTTEEEEEETTTTEEEEE
T ss_pred Eec--CCCccCCc-ee-------eC------CEEEEEeCCCEEEEEECCCCCEEeE
Confidence 222 22233311 22 33 2566666999999999999998753
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.4e-06 Score=82.51 Aligned_cols=232 Identities=13% Similarity=0.100 Sum_probs=150.6
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecC-C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVG-D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~-d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
.-+..|-..+..++.+-+|..+++... | .++++|++.-..-....+.+-|..+.+ ..+|..+-....+....+|.|.
T Consensus 47 KhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~ 125 (558)
T KOG0882|consen 47 KHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIF 125 (558)
T ss_pred hhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcE
Confidence 345567778888899999998888555 6 999999998443233444444533332 3333322112333345678899
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
++|-.....+ .... ...|..+|.++.+.|-+. .+++....|.|..|..... ++..+....+..
T Consensus 126 VvD~~~d~~q---~~~f-------kklH~sPV~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~------~qfPr~~l~~~~ 188 (558)
T KOG0882|consen 126 VVDGFGDFCQ---DGYF-------KKLHFSPVKKIRYNQAGD-SAVSIDISGMVEYWSAEGP------FQFPRTNLNFEL 188 (558)
T ss_pred EECCcCCcCc---ccee-------cccccCceEEEEeecccc-ceeeccccceeEeecCCCc------ccCccccccccc
Confidence 9986652211 1111 123899999999999999 8999999999999987630 111111111111
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee----------------------
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS---------------------- 339 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~---------------------- 339 (548)
- ...-+..+...+....++.|+|++..+.+-..|..|+++++.++++++.+..
T Consensus 189 K-----~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgR 263 (558)
T KOG0882|consen 189 K-----HETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGR 263 (558)
T ss_pred c-----ccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhh
Confidence 1 1122333334457788999999999999999999999999998876544321
Q ss_pred ----------cC-CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec
Q 008939 340 ----------YY-GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 340 ----------~~-~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~ 379 (548)
|. -.-..+.|...|++|+-|+-= -|++.++.+++++..+
T Consensus 264 Rmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 264 RMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRIL 313 (558)
T ss_pred hhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEe
Confidence 11 123456788888888877643 4889999988877655
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.49 E-value=0.00015 Score=68.88 Aligned_cols=208 Identities=18% Similarity=0.234 Sum_probs=130.8
Q ss_pred EEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEe-cCCCcEEEEEeCCCcEE
Q 008939 178 CHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWV-PGGDGAFVVGHADGNLY 256 (548)
Q Consensus 178 ~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-p~~~~~l~s~~~dg~v~ 256 (548)
+.+|.+. ++.++++-...+.|+.|+.... +... . .......+++. +++ .|+++..++ +.
T Consensus 4 gp~~d~~--~g~l~~~D~~~~~i~~~~~~~~-----~~~~--~--------~~~~~~G~~~~~~~g--~l~v~~~~~-~~ 63 (246)
T PF08450_consen 4 GPVWDPR--DGRLYWVDIPGGRIYRVDPDTG-----EVEV--I--------DLPGPNGMAFDRPDG--RLYVADSGG-IA 63 (246)
T ss_dssp EEEEETT--TTEEEEEETTTTEEEEEETTTT-----EEEE--E--------ESSSEEEEEEECTTS--EEEEEETTC-EE
T ss_pred ceEEECC--CCEEEEEEcCCCEEEEEECCCC-----eEEE--E--------ecCCCceEEEEccCC--EEEEEEcCc-eE
Confidence 5677774 2667777777899999998762 1111 1 12227788888 554 566666644 55
Q ss_pred EEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee--e-cCCCeEEEEECCCCCEEEEEECC--------CeEEE
Q 008939 257 VYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH--I-CQGSINSIAFSTDGTYLATVGRD--------GYLRV 325 (548)
Q Consensus 257 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-h~~~v~~~~~sp~g~~l~s~~~d--------g~v~v 325 (548)
++|..+. .... +.... . .....+.+++.++|++.++.... |.|..
T Consensus 64 ~~d~~~g-~~~~-----------------------~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 64 VVDPDTG-KVTV-----------------------LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEETTTT-EEEE-----------------------EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred EEecCCC-cEEE-----------------------EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 5587652 1100 11110 0 12568899999999977776543 55777
Q ss_pred EeCCCCeEEEeeeecCCceEEEEEccCCCEEE-EEeCCCeEEEEECCC--c-----eeEEeccCCCCCeEEEEEecCCCC
Q 008939 326 FDYSKEQLICGGKSYYGALLCCAWSMDGKYIL-TGGEDDLVQVWSMED--R-----KVVAWGEGHNSWVSGVAFDSYWSQ 397 (548)
Q Consensus 326 wd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~-sgs~dg~I~vwd~~~--~-----~~~~~~~~h~~~V~~v~~~p~~~~ 397 (548)
++.. ++...... .....+.|+|+||++.|+ +-+..+.|..+++.. . +....+....+..-.++++.
T Consensus 120 ~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~---- 193 (246)
T PF08450_consen 120 IDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS---- 193 (246)
T ss_dssp EETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT----
T ss_pred ECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC----
Confidence 7777 55443333 345678999999999765 566788999999863 2 12223333333578899998
Q ss_pred CCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCCCcee
Q 008939 398 PNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTF 445 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~ 445 (548)
+| ++.++.-..+.|.++|.+ ++.+..+... ....+++|
T Consensus 194 ---~G------~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 194 ---DG------NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp ---TS-------EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ---CC------CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 88 677777788999999987 8888888764 44445555
No 306
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=8.2e-08 Score=99.40 Aligned_cols=218 Identities=14% Similarity=0.145 Sum_probs=149.0
Q ss_pred CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCC
Q 008939 163 KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG 242 (548)
Q Consensus 163 ~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~ 242 (548)
.++++.++-+....+|++|+-. .+.|++|+..|+|+++++.+.. .. .....|..+|+-+.=+.+|
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~---~~hL~vG~~~Geik~~nv~sG~-----~e-------~s~ncH~SavT~vePs~dg 1155 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGG---TNHLAVGSHAGEIKIFNVSSGS-----ME-------ESVNCHQSAVTLVEPSVDG 1155 (1516)
T ss_pred cccchhhhccccceeeEEeecC---CceEEeeeccceEEEEEccCcc-----cc-------ccccccccccccccccCCc
Confidence 4567777778889999999988 7789999999999999998732 11 1122489999999999999
Q ss_pred CcEEEEEeCCC-cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC
Q 008939 243 DGAFVVGHADG-NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG 321 (548)
Q Consensus 243 ~~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg 321 (548)
..+|.+++... -..+|++..-+.....| ..-.++.|+..-+.-+.|....
T Consensus 1156 s~~Ltsss~S~PlsaLW~~~s~~~~~Hsf-----------------------------~ed~~vkFsn~~q~r~~gt~~d 1206 (1516)
T KOG1832|consen 1156 STQLTSSSSSSPLSALWDASSTGGPRHSF-----------------------------DEDKAVKFSNSLQFRALGTEAD 1206 (1516)
T ss_pred ceeeeeccccCchHHHhccccccCccccc-----------------------------cccceeehhhhHHHHHhccccc
Confidence 84444444433 57799987644333333 2355788988655555565556
Q ss_pred eEEEEeCCCCeEEEee-ee---cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCC
Q 008939 322 YLRVFDYSKEQLICGG-KS---YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQ 397 (548)
Q Consensus 322 ~v~vwd~~~~~~~~~~-~~---~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 397 (548)
...+||++++..+.++ .+ ....-++..|+|+.++++ +|| .+||++..+.++.|...+..+. =.|+|
T Consensus 1207 ~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP---- 1276 (1516)
T KOG1832|consen 1207 DALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGG-GGFHP---- 1276 (1516)
T ss_pred ceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheeccc-ccccC----
Confidence 7899999998765552 11 111236788999988765 343 5899998888877765443333 35899
Q ss_pred CCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCC
Q 008939 398 PNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGS 449 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (548)
.| ..++..+ -|||+++-+.++.+.. -....+.|...|
T Consensus 1277 ---~g------~eVIINS-----EIwD~RTF~lLh~VP~-Ldqc~VtFNstG 1313 (1516)
T KOG1832|consen 1277 ---SG------NEVIINS-----EIWDMRTFKLLHSVPS-LDQCAVTFNSTG 1313 (1516)
T ss_pred ---CC------ceEEeec-----hhhhhHHHHHHhcCcc-ccceEEEeccCc
Confidence 88 4565544 5899999887766654 233445555544
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.46 E-value=0.00012 Score=69.55 Aligned_cols=237 Identities=17% Similarity=0.115 Sum_probs=141.7
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCc-EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGN-LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
..+.-.++.+|.....++.+-.-|. +.+||..+. .....+.. .+-+.|.+| -.||
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g-~~~~~~~a-----------------~~gRHFyGH------g~fs 59 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTG-QLLQRLWA-----------------PPGRHFYGH------GVFS 59 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCC-ceeeEEcC-----------------CCCCEEecC------EEEc
Confidence 3455678889966646777777664 678998763 32222221 112233333 5799
Q ss_pred CCCCEEEEEEC-----CCeEEEEeCC-CCeEEEeeeecCCceEEEEEccCCCEEEEEeC------------------CCe
Q 008939 309 TDGTYLATVGR-----DGYLRVFDYS-KEQLICGGKSYYGALLCCAWSMDGKYILTGGE------------------DDL 364 (548)
Q Consensus 309 p~g~~l~s~~~-----dg~v~vwd~~-~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~------------------dg~ 364 (548)
+||++|++.-. .|.|-|||.. ..+.+..+..|.-.-..+.+.|||+.|+++.. +-.
T Consensus 60 ~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ps 139 (305)
T PF07433_consen 60 PDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPS 139 (305)
T ss_pred CCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence 99999998744 4889999998 56777788877767778999999988887631 223
Q ss_pred EEEEECCCceeEEe--c--cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe---EEeeeecC
Q 008939 365 VQVWSMEDRKVVAW--G--EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE---IVVPLRRG 437 (548)
Q Consensus 365 I~vwd~~~~~~~~~--~--~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~---~~~~~~~~ 437 (548)
+...|..+++.+.. + ..|...|..+++.+ +| .++.+.+. .-.... ++...+.
T Consensus 140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-------~G-------~V~~a~Q~------qg~~~~~~PLva~~~~- 198 (305)
T PF07433_consen 140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-------DG-------TVAFAMQY------QGDPGDAPPLVALHRR- 198 (305)
T ss_pred eEEEecCCCceeeeeecCccccccceeeEEecC-------CC-------cEEEEEec------CCCCCccCCeEEEEcC-
Confidence 55567777877765 4 23777899999988 77 34444331 111111 1111111
Q ss_pred CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--E-EEEECCCeEEEEeCCC
Q 008939 438 PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--V-LTVCREGHIKIWMRPG 514 (548)
Q Consensus 438 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l-~t~s~Dg~I~iW~~~~ 514 (548)
+..+...+.+. .....-..-|-+|++++++ + +|+=.-+.+.+||..+
T Consensus 199 --------------------------g~~~~~~~~p~----~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 199 --------------------------GGALRLLPAPE----EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred --------------------------CCcceeccCCh----HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 00011111110 0011224568899999974 4 4555889999999888
Q ss_pred CCccccCCCCcEEEec--CCCCceEeeecc
Q 008939 515 VAESQSSSSETVLSTS--SKDKPLLSSKVV 542 (548)
Q Consensus 515 ~~~~~~~~~~~v~~~s--~d~~~l~s~~~~ 542 (548)
+.......-..+..+. +++ +++++..+
T Consensus 249 g~~~~~~~l~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 249 GRLLGSVPLPDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred CCEeeccccCceeeeeecCCc-eEEeCCCc
Confidence 7755544444444333 333 56666554
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=6e-05 Score=72.25 Aligned_cols=124 Identities=13% Similarity=0.080 Sum_probs=84.3
Q ss_pred CCCCceeEEeCCCCCEEEEecCCeEE---------------EEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEE
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGDAIF---------------ISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLI 193 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d~v~---------------vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~ 193 (548)
|.....++.+++...+|.++..-.+. +.-++....+++.-+..+...|..++|+|.. ..+|..
T Consensus 134 h~qk~f~v~r~~gcrli~y~~~~s~lv~sQks~qa~lpGvGv~~l~~~~fkssq~lp~~g~~IrdlafSp~~--~GLl~~ 211 (463)
T KOG1645|consen 134 HKQKSFSVGRNAGCRLIGYDESSSTLVVSQKSGQALLPGVGVQKLESHDFKSSQILPGEGSFIRDLAFSPFN--EGLLGL 211 (463)
T ss_pred hcccceeeeecCCceEEecccccceeeeeccchhhcCCccceEEeccCCcchhhcccccchhhhhhccCccc--cceeee
Confidence 56666666666666555543221111 1222222244555555667789999999982 237889
Q ss_pred EEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 194 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 194 g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
++.+..|.|.|+++. .++.... ....+++++|.-+..+++..|...|.|+|||++......
T Consensus 212 asl~nkiki~dlet~------~~vssy~-------a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 212 ASLGNKIKIMDLETS------CVVSSYI-------AYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred eccCceEEEEecccc------eeeehee-------ccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence 999999999999972 2222111 247899999999999899999999999999999754433
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.43 E-value=6.1e-05 Score=71.07 Aligned_cols=190 Identities=14% Similarity=0.085 Sum_probs=115.1
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec-cCCC---CC
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG-EGHN---SW 385 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~-~~h~---~~ 385 (548)
++..+++++.++.|..||..+|+.+..... ...+.... ..++..++++..++.|..+|.++++.+... .... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 566788888999999999999999887764 33222222 223456677778889999999999987763 3221 11
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCcee--cCC--CCccccCCeeeec
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTF--STG--SQSAHWDNVCPVG 461 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~d~~~~~g 461 (548)
........ ++ ..++.+..++.|..+|+++|+.+.......+.....+ ..+ +.....+..+.+.
T Consensus 113 ~~~~~~~~-------~~------~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 179 (238)
T PF13360_consen 113 RSSSSPAV-------DG------DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVS 179 (238)
T ss_dssp B--SEEEE-------ET------TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEE
T ss_pred ccccCceE-------ec------CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEE
Confidence 12222222 33 3677777799999999999999888876332211111 000 1111112345455
Q ss_pred ccCCCCceeecCCCCceEEeecCCCCeeE-EEEeCCeEEEEECCCeEEEEeCCCCC
Q 008939 462 TLQPAPSMRDVPKLSPLVAHRVHTEPLSG-LIFTQESVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 462 ~~~~~~~~~d~~~~~~~~~~~~h~~~V~~-l~fspd~l~t~s~Dg~I~iW~~~~~~ 516 (548)
..+..+...|+.+.+.+.... ...+.. +....+.|+.++.|+.|..||+.+++
T Consensus 180 ~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 180 SGDGRVVAVDLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp CCTSSEEEEETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 544443333777776554222 233333 33333467777799999999998865
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.42 E-value=7.8e-07 Score=57.51 Aligned_cols=39 Identities=31% Similarity=0.487 Sum_probs=36.2
Q ss_pred ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 008939 373 RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424 (548)
Q Consensus 373 ~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd 424 (548)
++++..+++|...|++|+|+| ++ .+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-------~~------~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-------DG------NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-------TS------SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-------cc------ccceeeCCCCEEEEEC
Confidence 467889999999999999999 87 7999999999999998
No 311
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=1.3e-07 Score=98.05 Aligned_cols=195 Identities=18% Similarity=0.155 Sum_probs=138.1
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC--Ce
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED--DL 364 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d--g~ 364 (548)
+...++..++.|+...+|++|+-+.++|+.|+..|.|++|++.+|........|..+|+-+.-+.||..+++.+.- -.
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 3456778888899999999999999999999999999999999999999999999999999999999877765543 35
Q ss_pred EEEEECCC-ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-----C
Q 008939 365 VQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-----P 438 (548)
Q Consensus 365 I~vwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-----~ 438 (548)
..+|++.. +...+.+.+ -.++.|+. .- +.+.+.+ .-....+||+.++..+.++-.+ .
T Consensus 1169 saLW~~~s~~~~~Hsf~e----d~~vkFsn-------~~----q~r~~gt--~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDE----DKAVKFSN-------SL----QFRALGT--EADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred HHHhccccccCccccccc----cceeehhh-------hH----HHHHhcc--cccceEEEecccCcHHHHhcCcchhhhh
Confidence 78999865 455555543 34678864 21 1022333 3356889999999887764332 2
Q ss_pred CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCC
Q 008939 439 LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 439 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~ 515 (548)
..+...|+|......||+. +||++..+.+..+......+. =.|+|++ ++.-++ |||+++-
T Consensus 1232 ~~n~a~FsP~D~LIlndGv-----------LWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLILNDGV-----------LWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred hccccccCCCcceEeeCce-----------eeeeccHHHHhhhhhheeccc-ccccCCCceEEeech-----hhhhHHH
Confidence 3456778888776666654 577777666655544432222 2478865 555443 6776653
No 312
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.38 E-value=0.00029 Score=67.74 Aligned_cols=246 Identities=20% Similarity=0.190 Sum_probs=138.9
Q ss_pred EEeCCCCCEEEEecC-----------CeEEEEEccCCCCCCeEEEecCCC-Cc------eEEEecCCCCCCceEEEEEcC
Q 008939 136 TNFDGKGTYIIFNVG-----------DAIFISDLNSQDKDPIKSIHFSNS-NP------VCHAFDQDAKDGHDLLIGLNS 197 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~-----------d~v~vwd~~~~~~~~i~~~~~~~~-~~------~~~~~~p~~~~~~~l~~g~~d 197 (548)
+..+|+|+.+.+..- |.|.+||..+- .+...+...+. .. ...+++.+ ++++++.-..
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL--~~~~EI~iP~k~R~~~~~~~~~~~ls~d---gk~~~V~N~T 115 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL--SPTGEIEIPPKPRAQVVPYKNMFALSAD---GKFLYVQNFT 115 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT--EEEEEEEETTS-B--BS--GGGEEE-TT---SSEEEEEEES
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC--cccceEecCCcchheecccccceEEccC---CcEEEEEccC
Confidence 567899998875321 47999999984 47777765543 22 23345555 5555554332
Q ss_pred --CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc
Q 008939 198 --GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD 275 (548)
Q Consensus 198 --g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 275 (548)
-.|.+.|+.. +++..... ... |...-|.++.-|.+-|.||.+.-..++..++.......
T Consensus 116 Pa~SVtVVDl~~------~kvv~ei~--------~PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~--- 176 (342)
T PF06433_consen 116 PATSVTVVDLAA------KKVVGEID--------TPG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK--- 176 (342)
T ss_dssp SSEEEEEEETTT------TEEEEEEE--------GTS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE---
T ss_pred CCCeEEEEECCC------Cceeeeec--------CCC--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc---
Confidence 3466666664 44443332 222 33334555447899999999999999876654311110
Q ss_pred cceeeeecCCCCCCCCeeEeeecCCC-eEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE--Eeeee----------cCC
Q 008939 276 QTQFSVAHPRYSKSNPIARWHICQGS-INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI--CGGKS----------YYG 342 (548)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~--~~~~~----------~~~ 342 (548)
.| .....+ +..-++...+..++..+.+|.|+-.|+...... ..+.- -.+
T Consensus 177 --~F----------------~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG 238 (342)
T PF06433_consen 177 --VF----------------DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG 238 (342)
T ss_dssp --ES----------------STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-
T ss_pred --cc----------------CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCc
Confidence 11 000111 122334444444555667777777777644321 11110 012
Q ss_pred ceEEEEEccCCCEEEEEeC---CC-------eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 343 ALLCCAWSMDGKYILTGGE---DD-------LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 343 ~v~~l~~spdg~~l~sgs~---dg-------~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
...-+++++..+.|++--. ++ .|-++|+.+++.+.++.. ..++.+|..+. |.. .+|.
T Consensus 239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsq-------d~~-----P~L~ 305 (342)
T PF06433_consen 239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQ-------DDK-----PLLY 305 (342)
T ss_dssp SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEES-------SSS------EEE
T ss_pred ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEcc-------CCC-----cEEE
Confidence 3445778876666555322 11 488889999999998873 34577888876 441 3454
Q ss_pred -EEeCCCeEEEEECCCCeEEeeeec
Q 008939 413 -SVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 413 -s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
....++.|.+||..+++.+..++.
T Consensus 306 ~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 306 ALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEETTTTEEEEEETTT--EEEEE--
T ss_pred EEcCCCCeEEEEeCcCCcEEeehhc
Confidence 455689999999999999988875
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.38 E-value=0.0031 Score=64.17 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=85.8
Q ss_pred CCeEEEEECC-CCCEEEEE----ECCCe----EEEEeCCCCeEEEe---eeecCCceEEEEEccCCCEEEEEeCCCeEEE
Q 008939 300 GSINSIAFST-DGTYLATV----GRDGY----LRVFDYSKEQLICG---GKSYYGALLCCAWSMDGKYILTGGEDDLVQV 367 (548)
Q Consensus 300 ~~v~~~~~sp-~g~~l~s~----~~dg~----v~vwd~~~~~~~~~---~~~~~~~v~~l~~spdg~~l~sgs~dg~I~v 367 (548)
....++.|+. +...+.+. +.+|. -.+|++...++... --.....+.|++++|+.+.|+.|+.||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 4456778886 44555554 33444 34677765543211 1235678999999999999999999999999
Q ss_pred EECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 368 WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 368 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
||...+... +..+.-..+.++|+| +| ..+++|+.-|.|.+||+.-..+...+
T Consensus 286 yD~~~~~t~--~~ka~~~P~~iaWHp-------~g------ai~~V~s~qGelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 286 YDTTRGVTL--LAKAEFIPTLIAWHP-------DG------AIFVVGSEQGELQCFDMALSPIKMQL 337 (545)
T ss_pred EEcCCCeee--eeeecccceEEEEcC-------CC------cEEEEEcCCceEEEEEeecCccceee
Confidence 999766322 223455678999999 98 78999999999999999876554443
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.31 E-value=0.0016 Score=61.96 Aligned_cols=210 Identities=14% Similarity=0.124 Sum_probs=129.0
Q ss_pred CceEEEecCCCCCCceEEEEEcCCc-EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe---
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGD-VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH--- 250 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~-I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~--- 250 (548)
....++.+|.. ...++.+-.-|+ ..+||.++. +.. ..... +.+ ...-=.-.|++||+ +|++.-
T Consensus 6 RgH~~a~~p~~--~~avafaRRPG~~~~v~D~~~g-----~~~-~~~~a-~~g---RHFyGHg~fs~dG~-~LytTEnd~ 72 (305)
T PF07433_consen 6 RGHGVAAHPTR--PEAVAFARRPGTFALVFDCRTG-----QLL-QRLWA-PPG---RHFYGHGVFSPDGR-LLYTTENDY 72 (305)
T ss_pred cccceeeCCCC--CeEEEEEeCCCcEEEEEEcCCC-----cee-eEEcC-CCC---CEEecCEEEcCCCC-EEEEecccc
Confidence 33445556642 345566666665 667887662 111 11111 111 01111357999999 677654
Q ss_pred --CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE----------
Q 008939 251 --ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG---------- 318 (548)
Q Consensus 251 --~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~---------- 318 (548)
..|.|-|||.... ...+..|..|.-....+.+.|||+.|+++.
T Consensus 73 ~~g~G~IgVyd~~~~-------------------------~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~G 127 (305)
T PF07433_consen 73 ETGRGVIGVYDAARG-------------------------YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSG 127 (305)
T ss_pred CCCcEEEEEEECcCC-------------------------cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccC
Confidence 3589999999831 233555666666677888999998777762
Q ss_pred --------CCCeEEEEeCCCCeEEEe--e--eecCCceEEEEEccCCCEEEEEeCCC-------eEEEEECCCceeEEec
Q 008939 319 --------RDGYLRVFDYSKEQLICG--G--KSYYGALLCCAWSMDGKYILTGGEDD-------LVQVWSMEDRKVVAWG 379 (548)
Q Consensus 319 --------~dg~v~vwd~~~~~~~~~--~--~~~~~~v~~l~~spdg~~l~sgs~dg-------~I~vwd~~~~~~~~~~ 379 (548)
.+-.|...|..+|+++.. + .-|...|.-+++.++|..++..-..+ .|-+++.. +.+..+
T Consensus 128 R~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~ 205 (305)
T PF07433_consen 128 RAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLL 205 (305)
T ss_pred ceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--Ccceec
Confidence 123566667778887766 3 23667899999999997655543322 24444433 222222
Q ss_pred c-------CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 380 E-------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 380 ~-------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
. .-...|-+|++++ +|. ...+|+=..+.+.+||..+++.+.....
T Consensus 206 ~~p~~~~~~l~~Y~gSIa~~~-------~g~-----~ia~tsPrGg~~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 206 PAPEEQWRRLNGYIGSIAADR-------DGR-----LIAVTSPRGGRVAVWDAATGRLLGSVPL 257 (305)
T ss_pred cCChHHHHhhCCceEEEEEeC-------CCC-----EEEEECCCCCEEEEEECCCCCEeecccc
Confidence 2 3457899999998 772 3445666789999999999998765443
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.27 E-value=0.00025 Score=73.59 Aligned_cols=104 Identities=22% Similarity=0.212 Sum_probs=75.4
Q ss_pred ECCCCCEEEEEECCCeEEEEeCCC-----CeEEEeeeecCCceEEEEEccCCCEEEEEeC-CCeEEEEECCCcee-----
Q 008939 307 FSTDGTYLATVGRDGYLRVFDYSK-----EQLICGGKSYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMEDRKV----- 375 (548)
Q Consensus 307 ~sp~g~~l~s~~~dg~v~vwd~~~-----~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~~~~~----- 375 (548)
+.++|++... .++.|.+.|.++ .+.+..+. -......++++|||+++++++. +..|.|.|+++.+.
T Consensus 284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457877665 367899999998 34554444 3455778999999998877665 89999999987542
Q ss_pred -------EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 376 -------VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 376 -------~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+.+.+- ...-...+|++ +| +...|.-.|.+|..||+..
T Consensus 361 ~~~~~~vvaevev-GlGPLHTaFDg-------~G------~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPEL-GLGPLHTAFDG-------RG------NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeecc-CCCcceEEECC-------CC------CEEEeEeecceeEEEehHH
Confidence 333332 22233578887 77 6788888899999999986
No 316
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=6.1e-06 Score=79.83 Aligned_cols=218 Identities=16% Similarity=0.076 Sum_probs=144.7
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
|.+.|+.+.-.-. + ++.+++.||.++.|-...-. .-+-+..++.|.+.|.+++.+
T Consensus 8 hrd~i~hv~~tka-~-fiiqASlDGh~KFWkKs~is-----------------------GvEfVKhFraHL~~I~sl~~S 62 (558)
T KOG0882|consen 8 HRDVITHVFPTKA-K-FIIQASLDGHKKFWKKSRIS-----------------------GVEFVKHFRAHLGVILSLAVS 62 (558)
T ss_pred ccceeeeEeeehh-h-eEEeeecchhhhhcCCCCcc-----------------------ceeehhhhHHHHHHHHhhhcc
Confidence 6777777655443 3 89999999999999754300 123455667788899999999
Q ss_pred CCCCEEEEEEC-CCeEEEEeCCCCeEEEeeeecC-CceEEEEEccCCC--EEEE-EeCCCeEEEEECCCce--eEEeccC
Q 008939 309 TDGTYLATVGR-DGYLRVFDYSKEQLICGGKSYY-GALLCCAWSMDGK--YILT-GGEDDLVQVWSMEDRK--VVAWGEG 381 (548)
Q Consensus 309 p~g~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~~spdg~--~l~s-gs~dg~I~vwd~~~~~--~~~~~~~ 381 (548)
-++.++.+... |..++++|++.-..+..++-.. ....++..++... .|++ .-.++.|.++|-.... ....-.-
T Consensus 63 ~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl 142 (558)
T KOG0882|consen 63 YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL 142 (558)
T ss_pred ccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccc
Confidence 99999999777 9999999998766553333221 1122233333322 3333 3357899999976543 3344456
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeec
Q 008939 382 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVG 461 (548)
Q Consensus 382 h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g 461 (548)
|..+|.++.+.| -+ ..+++....|.|.-|.... ..+ . +...+.
T Consensus 143 H~sPV~~i~y~q-------a~------Ds~vSiD~~gmVEyWs~e~--~~q---f--Pr~~l~----------------- 185 (558)
T KOG0882|consen 143 HFSPVKKIRYNQ-------AG------DSAVSIDISGMVEYWSAEG--PFQ---F--PRTNLN----------------- 185 (558)
T ss_pred ccCceEEEEeec-------cc------cceeeccccceeEeecCCC--ccc---C--cccccc-----------------
Confidence 999999999998 66 5688888889999998763 111 0 001111
Q ss_pred ccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 462 TLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 462 ~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
|.++...-+..+.-.....+++.|+|++ +.+-+.|..||++.+.+++
T Consensus 186 --------~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 186 --------FELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred --------ccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 1112222222222335567899999985 8888899999999988876
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00029 Score=74.00 Aligned_cols=218 Identities=13% Similarity=0.139 Sum_probs=133.6
Q ss_pred EEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc-----EEEEEeeecc
Q 008939 136 TNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD-----VYSVSLRQQL 209 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~-----I~iwdl~~~~ 209 (548)
-++++.+..++++..+ .|.+.+-. ...++.+...+..+...-|.-+ ....|++-..|++ |++|+++..
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s---~~~~~~fqa~~~siv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw~lek~- 102 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS---FQLIRGFQAYEQSIVQFLYILN--KQNFLFSVGEDEQGNPVLLKIWDLEKV- 102 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc---ceeeehheecchhhhhHhhccc--CceEEEEEeecCCCCceEEEEeccccc-
Confidence 4667788888887776 55555433 2233555544444222222222 1356666666654 899999873
Q ss_pred ccccc--ceeee-eeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCC--CCCCCCCcccccccceeeeecC
Q 008939 210 QDVGK--KLVGA-HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK--DGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 210 ~~~~~--~~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+.+. .+... ..+.........++.+++.+.+-. .+|+|-.+|.|.++.=+- +...
T Consensus 103 -~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgs------------------ 162 (933)
T KOG2114|consen 103 -DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGS------------------ 162 (933)
T ss_pred -CCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhcccc------------------
Confidence 2222 12211 112212223678899999999877 899999999999985322 1111
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE-EEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL-ICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
.+...+....+|++++|..+++.++.+..-..|.+|.+....+ ...+..|...+.|..+++....+++++ +.
T Consensus 163 ------r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e 235 (933)
T KOG2114|consen 163 ------RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SE 235 (933)
T ss_pred ------ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-Cc
Confidence 1111222348999999999888744444456799999984332 444677778899999987666455554 46
Q ss_pred eEEEEECCCceeEEecc-CCCCCe
Q 008939 364 LVQVWSMEDRKVVAWGE-GHNSWV 386 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~-~h~~~V 386 (548)
.|.+||.....+-..+. +|...+
T Consensus 236 ~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 236 FLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred eEEEEcCCCcceeeeecCCCeEEE
Confidence 89999988655544444 555433
No 318
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.25 E-value=0.0017 Score=59.03 Aligned_cols=141 Identities=20% Similarity=0.210 Sum_probs=87.5
Q ss_pred ceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 008939 189 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDS 268 (548)
Q Consensus 189 ~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 268 (548)
.++++|+..+.+.-.|..+ ++...... -..++.+-+.. -++ .++.|+..|.+++.+..++ ...+
T Consensus 24 T~v~igSHs~~~~avd~~s-----G~~~We~i--------lg~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~tG-s~~w 87 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQS-----GNLIWEAI--------LGVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKTG-SQIW 87 (354)
T ss_pred eEEEEecCCceEEEecCCC-----CcEEeehh--------hCceeeeeeEE-ECC-EEEEEEccCcEEEEEecch-hhee
Confidence 4688888888887777655 23222211 23444444444 344 7999999999999999873 2222
Q ss_pred CcccccccceeeeecCCCCCCCCeeEeeecCCCeE-EEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEE
Q 008939 269 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSIN-SIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCC 347 (548)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 347 (548)
.+... +.|. .....+++.++..++.|+.....|.++..++...+...+-..+-
T Consensus 88 ~f~~~--------------------------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 88 NFVIL--------------------------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred eeeeh--------------------------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 22211 1122 23346788999999999999999999999988876544444444
Q ss_pred EEcc-CCCEEEEEeCCCeEEEEECCC
Q 008939 348 AWSM-DGKYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 348 ~~sp-dg~~l~sgs~dg~I~vwd~~~ 372 (548)
+..| ++ .|..+...|.|.--+.++
T Consensus 142 ~i~~g~~-sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 142 VIAPGDG-SLYAAITAGAVLAVTKNP 166 (354)
T ss_pred eecCCCc-eEEEEeccceEEEEccCC
Confidence 5556 44 344444455544444433
No 319
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.23 E-value=0.00029 Score=71.43 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=62.5
Q ss_pred cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc
Q 008939 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR 373 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~ 373 (548)
....|.+++++|+...|+.|..||.|.+||...+..... ...-....++|+|+|..+++|++.|.+.+||+.-.
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 357899999999999999999999999999987643322 23445788999999999999999999999998643
No 320
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.20 E-value=0.0002 Score=73.59 Aligned_cols=215 Identities=14% Similarity=0.151 Sum_probs=119.7
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
+..+..-+++.. ..+|+.|+..|.|++|+-..... ++ .+..+ ....+..+..+++.. ++|.|+..
T Consensus 33 ~~~v~lTc~dst---~~~l~~GsS~G~lyl~~R~~~~~---~~------~~~~~--~~~~~~~~~vs~~e~-lvAagt~~ 97 (726)
T KOG3621|consen 33 PARVKLTCVDAT---EEYLAMGSSAGSVYLYNRHTGEM---RK------LKNEG--ATGITCVRSVSSVEY-LVAAGTAS 97 (726)
T ss_pred cceEEEEEeecC---CceEEEecccceEEEEecCchhh---hc------ccccC--ccceEEEEEecchhH-hhhhhcCC
Confidence 334444444444 77999999999999998654210 11 11111 234555666777776 88889999
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
|.|.++-+.........+-...+ +.|...|++++|++++..|++|...|.|..-.+....
T Consensus 98 g~V~v~ql~~~~p~~~~~~t~~d--------------------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~ 157 (726)
T KOG3621|consen 98 GRVSVFQLNKELPRDLDYVTPCD--------------------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQ 157 (726)
T ss_pred ceEEeehhhccCCCcceeecccc--------------------ccCCceEEEEEecccccEEeecCCCceEEEEEechhh
Confidence 99999998873322221111100 1167899999999999999999999999988887621
Q ss_pred E----EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCC--eEEEEEecCCCCCCCCCCccc
Q 008939 333 L----ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW--VSGVAFDSYWSQPNSDGTAET 406 (548)
Q Consensus 333 ~----~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~--V~~v~~~p~~~~~~~dg~~~~ 406 (548)
. ...+-...+.|.-+.+. ++ +|++.+- -...+++++.....+.-+...+. -.+.+|-|.. .+ .
T Consensus 158 ~~~~~~q~il~~ds~IVQlD~~-q~-~LLVStl-~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~-----~~---~ 226 (726)
T KOG3621|consen 158 AFLSKSQEILSEDSEIVQLDYL-QS-YLLVSTL-TRCILCQTEAETITQIGKKPRKSLIDFGACFFPGQ-----CK---A 226 (726)
T ss_pred hhccccceeeccCcceEEeecc-cc-eehHhhh-hhhheeecchhHHHHhcCCCcCCccccceEEeecc-----cc---C
Confidence 1 11222234556555554 23 3333322 23455666544322222212222 2455666510 10 0
Q ss_pred eeEEEEEEeCCCeEEEEECCC-CeEEeeee
Q 008939 407 VMYRFGSVGQDTRLLLWDLEM-DEIVVPLR 435 (548)
Q Consensus 407 ~~~~l~s~~~Dg~i~lwd~~~-~~~~~~~~ 435 (548)
. .-.+.|+.-| .|+|..+- |+..++..
T Consensus 227 q-~~~IycaRPG-~RlWead~~G~V~~Thq 254 (726)
T KOG3621|consen 227 Q-KPQIYCARPG-LRLWEADFAGEVIKTHQ 254 (726)
T ss_pred C-CceEEEecCC-CceEEeecceeEEEeee
Confidence 1 2233344433 68887663 45544443
No 321
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=0.00031 Score=70.14 Aligned_cols=233 Identities=12% Similarity=0.174 Sum_probs=142.4
Q ss_pred eEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC-----cEEEEEeeecc
Q 008939 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG-----DVYSVSLRQQL 209 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg-----~I~iwdl~~~~ 209 (548)
-..|+.|++++|--..+.|.||+..+ ..++..-......|....|+|. +.+|+.-...- .+.+..+..
T Consensus 310 ~frWS~DdKy~Arm~~~sisIyEtps--f~lld~Kslki~gIr~FswsP~---~~llAYwtpe~~~~parvtL~evPs-- 382 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTGNSISIYETPS--FMLLDKKSLKISGIRDFSWSPT---SNLLAYWTPETNNIPARVTLMEVPS-- 382 (698)
T ss_pred eEEeccCCceeEEeccceEEEEecCc--eeeecccccCCccccCcccCCC---cceEEEEcccccCCcceEEEEecCc--
Confidence 46899999999998889999999876 4455555556678888888887 55555443221 244444332
Q ss_pred cccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEE----------eCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 210 QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVG----------HADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~----------~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
.+.+. . ...+.-.=..+.|..+|+ +|++- +.-.++.|+.++..
T Consensus 383 ---~~~iR-t------~nlfnVsDckLhWQk~gd-yLcvkvdR~tK~~~~g~f~n~eIfrireK---------------- 435 (698)
T KOG2314|consen 383 ---KREIR-T------KNLFNVSDCKLHWQKSGD-YLCVKVDRHTKSKVKGQFSNLEIFRIREK---------------- 435 (698)
T ss_pred ---cceee-e------ccceeeeccEEEeccCCc-EEEEEEEeeccccccceEeeEEEEEeecc----------------
Confidence 11111 1 111233334567777777 55431 11224555555531
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC---CCeEEEEeCCCC----eEEEeeeecCCceEEEEEccC
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR---DGYLRVFDYSKE----QLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~---dg~v~vwd~~~~----~~~~~~~~~~~~v~~l~~spd 352 (548)
.-|+..+.. ...|..++|-|.|..+++-+. ..++.+|-+++. +++..+.. ...+.+.|+|.
T Consensus 436 ---------dIpve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPk 503 (698)
T KOG2314|consen 436 ---------DIPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPK 503 (698)
T ss_pred ---------CCCceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCC
Confidence 122222222 267889999999988776543 357888888732 23333332 45678999999
Q ss_pred CCEEEEE---eCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC------CCeEEEE
Q 008939 353 GKYILTG---GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ------DTRLLLW 423 (548)
Q Consensus 353 g~~l~sg---s~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~------Dg~i~lw 423 (548)
|++++.+ +..|.+.++|+.-..+...-...-...+.+.|+| .| +++++++. |.--+||
T Consensus 504 G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP-------tG------RYvvT~ss~wrhk~d~GYri~ 570 (698)
T KOG2314|consen 504 GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP-------TG------RYVVTSSSSWRHKVDNGYRIF 570 (698)
T ss_pred CcEEEEEEecccccceEEEecchhhhhhccCccccccccceECC-------CC------CEEEEeeehhhhccccceEEE
Confidence 9998775 4578999999985333222222223457799999 88 78888764 4445566
Q ss_pred ECC
Q 008939 424 DLE 426 (548)
Q Consensus 424 d~~ 426 (548)
+++
T Consensus 571 tfq 573 (698)
T KOG2314|consen 571 TFQ 573 (698)
T ss_pred Eee
Confidence 654
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.17 E-value=4.1e-05 Score=80.46 Aligned_cols=180 Identities=17% Similarity=0.265 Sum_probs=130.2
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
+..++.|+-...+..+|+++. +...... .....|+-|+. ++. ++.+|...|+|.+-|.++
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~------~e~r~~~------v~a~~v~imR~--Nnr-~lf~G~t~G~V~LrD~~s----- 206 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTE------KETRTTN------VSASGVTIMRY--NNR-NLFCGDTRGTVFLRDPNS----- 206 (1118)
T ss_pred Ccceeecchhhheeeeecccc------eeeeeee------ccCCceEEEEe--cCc-EEEeecccceEEeecCCc-----
Confidence 446788888888888998862 1111111 12223444443 445 899999999999999986
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC---------CCeEEEEeCCCCeEEEeee
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR---------DGYLRVFDYSKEQLICGGK 338 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~---------dg~v~vwd~~~~~~~~~~~ 338 (548)
..+++.+..|++.|.++.. .|++|++++. |..|+|||++..+.+.-+.
T Consensus 207 ---------------------~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~ 263 (1118)
T KOG1275|consen 207 ---------------------FETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ 263 (1118)
T ss_pred ---------------------Cceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence 5678999999999987765 6788888863 6678999999888776666
Q ss_pred ecCCceEEEEEccCC-CEEEEEeCCCeEEEEEC---CCce-eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 008939 339 SYYGALLCCAWSMDG-KYILTGGEDDLVQVWSM---EDRK-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413 (548)
Q Consensus 339 ~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~---~~~~-~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s 413 (548)
-+.++ .-+.|+|.- ..+++++..|...+.|. .+.. -+..+..-.+.+..+++++ +| ..|+.
T Consensus 264 ~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs-------n~------~alaf 329 (1118)
T KOG1275|consen 264 FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS-------NG------DALAF 329 (1118)
T ss_pred cccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC-------CC------ceEEE
Confidence 55544 456777753 46888999999999993 3321 2223333455699999998 88 68999
Q ss_pred EeCCCeEEEEE
Q 008939 414 VGQDTRLLLWD 424 (548)
Q Consensus 414 ~~~Dg~i~lwd 424 (548)
+..+|.|.+|-
T Consensus 330 gd~~g~v~~wa 340 (1118)
T KOG1275|consen 330 GDHEGHVNLWA 340 (1118)
T ss_pred ecccCcEeeec
Confidence 99999999997
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.15 E-value=0.00066 Score=74.01 Aligned_cols=210 Identities=17% Similarity=0.304 Sum_probs=128.3
Q ss_pred CCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee---
Q 008939 131 TSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR--- 206 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~--- 206 (548)
..|..+.|-.+...++..... .|.+-|.++. .+..+-...+.|.+.+|+|+ ...++..+..++|.+.+-.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~---~~eivg~vd~GI~aaswS~D---ee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETL---ELEIVGNVDNGISAASWSPD---EELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccc---ceeeeeeccCceEEEeecCC---CcEEEEEeCCcEEEEEeccccc
Confidence 567788888888777775544 6666677754 34444445679999999999 7788888888887765431
Q ss_pred ---ecc-cccc--cceee------eeeecc-CC------cc----------cCcceEEEEEecCCCcEEEEEe----CC-
Q 008939 207 ---QQL-QDVG--KKLVG------AHHYNK-DG------SV----------NNSRCTSVTWVPGGDGAFVVGH----AD- 252 (548)
Q Consensus 207 ---~~~-~~~~--~~~~~------~~~~~~-~~------~~----------~~~~v~~l~~~p~~~~~l~s~~----~d- 252 (548)
.++ .+.. .+.+. ...|.- .+ .. ..+.=+.|.|--||+ +|++.. .+
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSFVESETGT 221 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEEEeccCCc
Confidence 011 0000 00000 000000 00 00 111224599999999 888732 23
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE---CCCeEEEEeCC
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG---RDGYLRVFDYS 329 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~---~dg~v~vwd~~ 329 (548)
..|+|||-+ +.....-.+. .+.=.+++|-|.|.++++.. .|+.|.+|.-+
T Consensus 222 RkirV~drE--g~Lns~se~~-------------------------~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 222 RKIRVYDRE--GALNSTSEPV-------------------------EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred eeEEEeccc--chhhcccCcc-------------------------cccccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence 789999976 2222111111 13345799999999998864 45678888753
Q ss_pred ---CCeEEEeeeecCCceEEEEEccCCCEEEE---EeCCCeEEEEECCCce
Q 008939 330 ---KEQLICGGKSYYGALLCCAWSMDGKYILT---GGEDDLVQVWSMEDRK 374 (548)
Q Consensus 330 ---~~~~~~~~~~~~~~v~~l~~spdg~~l~s---gs~dg~I~vwd~~~~~ 374 (548)
.++....+......+..++|+.++..|++ ......|++|-+.+..
T Consensus 275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 23333333334445899999999999988 5566679999887753
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00027 Score=73.64 Aligned_cols=176 Identities=20% Similarity=0.296 Sum_probs=119.2
Q ss_pred CCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeee
Q 008939 142 GTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAH 220 (548)
Q Consensus 142 g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~ 220 (548)
+++++++..+ .|++.+.+.. + .....+... + .+|.++++|+.||.|.|-.+-+. +... ..
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~---~-~~~~~~s~~------~---~~Gey~asCS~DGkv~I~sl~~~-----~~~~-~~ 109 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGN---P-KTNFDHSSS------I---LEGEYVASCSDDGKVVIGSLFTD-----DEIT-QY 109 (846)
T ss_pred cceeeeccccceEEEEecCCc---c-ccccccccc------c---cCCceEEEecCCCcEEEeeccCC-----ccce-eE
Confidence 5788888887 9999998752 2 222112211 1 23889999999999999887661 2111 11
Q ss_pred eeccCCcccCcceEEEEEecC----CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee
Q 008939 221 HYNKDGSVNNSRCTSVTWVPG----GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH 296 (548)
Q Consensus 221 ~~~~~~~~~~~~v~~l~~~p~----~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (548)
. ...++.+|+++|+ ....+++|+.-| +.++.-+.-+.. ..+ .++
T Consensus 110 d-------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk-----------------------~~v-~l~ 157 (846)
T KOG2066|consen 110 D-------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK-----------------------DSV-VLS 157 (846)
T ss_pred e-------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc-----------------------cce-eee
Confidence 1 3678899999998 123799999988 888876542211 111 344
Q ss_pred ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCc------eEEEEEccCCCEEEEEeCCCeEEEEEC
Q 008939 297 ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA------LLCCAWSMDGKYILTGGEDDLVQVWSM 370 (548)
Q Consensus 297 ~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~------v~~l~~spdg~~l~sgs~dg~I~vwd~ 370 (548)
.-.|+|.++.|. |+++|.++.+| |+|||..+++.+..++..... -..+.|.++. .|+.|- ..+|+|..+
T Consensus 158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW-~d~v~i~~I 232 (846)
T KOG2066|consen 158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGW-GDSVKICSI 232 (846)
T ss_pred cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEec-CCeEEEEEE
Confidence 456999999995 67999998777 999999998887665543332 2346777664 567774 458999988
Q ss_pred CCc
Q 008939 371 EDR 373 (548)
Q Consensus 371 ~~~ 373 (548)
+.+
T Consensus 233 ~~~ 235 (846)
T KOG2066|consen 233 KKR 235 (846)
T ss_pred ecc
Confidence 843
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00023 Score=68.30 Aligned_cols=249 Identities=17% Similarity=0.197 Sum_probs=135.2
Q ss_pred ccCCCCCCceeEEeCCCCC-EEEEec-CCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 125 GASSSSTSMTNTNFDGKGT-YIIFNV-GDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~-~l~~~~-~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
-..+|+..|..++|+|... ++..++ ++.|.|.|+++.. .+.....+ ..+++.+|+-++ .+.|+.|..+|.|++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy~a~-~~~wSC~wDlde--~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSYIAY-NQIWSCCWDLDE--RHVIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccce--eeeheecc-CCceeeeeccCC--cceeEEeccCceEEE
Confidence 3445677888999999877 444444 5599999999744 55555544 799999999985 679999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEE------ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccc
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTW------VPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQ 276 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~------~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 276 (548)
||++...... ..+.... ...+|..|+. .+.+. +|+....+ +..|++..............
T Consensus 263 yD~R~~~~~~-~e~~a~~--------t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~--l~f~ei~~s~~~~p~vlele-- 328 (463)
T KOG1645|consen 263 YDMRQPEGPL-MELVANV--------TINPVHKIAPVQPNKIFTSGG-LLVFALTV--LQFYEIVFSAECLPCVLELE-- 328 (463)
T ss_pred EEccCCCchH-hhhhhhh--------ccCcceeecccCccccccccc-eEEeeehh--hhhhhhhccccCCCcccccC--
Confidence 9999732111 1111101 1223333333 23343 44444443 55666543221111100000
Q ss_pred ceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-------CeEE-EEeCCCCeEEEeee-ecCC-c---
Q 008939 277 TQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-------GYLR-VFDYSKEQLICGGK-SYYG-A--- 343 (548)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-------g~v~-vwd~~~~~~~~~~~-~~~~-~--- 343 (548)
..+.+.++.+++-.+.++..... ..+- --|..+|-.++..+ .+.+ .
T Consensus 329 ---------------------~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~k 387 (463)
T KOG1645|consen 329 ---------------------PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTK 387 (463)
T ss_pred ---------------------CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccc
Confidence 01445556666533433333221 0011 11223343333221 1211 0
Q ss_pred ---eEEEEEccCCCEEE-EEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCe
Q 008939 344 ---LLCCAWSMDGKYIL-TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR 419 (548)
Q Consensus 344 ---v~~l~~spdg~~l~-sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~ 419 (548)
-..+.-.++.++|+ +|..-+.+.+||..+.+.++++. -+.+|..++.... +|. .+|+. -.|..
T Consensus 388 l~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~-~~epv~Dicp~~~------n~~-----syLa~-LTd~~ 454 (463)
T KOG1645|consen 388 LSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLA-LSEPVLDICPNDT------NGS-----SYLAL-LTDDR 454 (463)
T ss_pred cccccceeccccccEEEEecCCcceeEEeccchhheeeecc-cCcceeecceeec------CCc-----chhhh-eecce
Confidence 01122234555544 35556789999999999999987 4578888776431 331 24443 34667
Q ss_pred EEEEECC
Q 008939 420 LLLWDLE 426 (548)
Q Consensus 420 i~lwd~~ 426 (548)
++|+..+
T Consensus 455 v~Iyk~e 461 (463)
T KOG1645|consen 455 VHIYKNE 461 (463)
T ss_pred EEEEecC
Confidence 7777543
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00011 Score=76.49 Aligned_cols=152 Identities=14% Similarity=0.180 Sum_probs=110.2
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
....++|++++.. .|+-|.-+|.|++++..-. .... ..|... .
T Consensus 38 ~~D~is~~av~~~---~~~~GtH~g~v~~~~~~~~--~~~~--------------------------~~~s~~------~ 80 (846)
T KOG2066|consen 38 QNDAISCCAVHDK---FFALGTHRGAVYLTTCQGN--PKTN--------------------------FDHSSS------I 80 (846)
T ss_pred hhhHHHHHHhhcc---eeeeccccceEEEEecCCc--cccc--------------------------cccccc------c
Confidence 4667788887643 7999999999999997641 1100 011111 4
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC-----CCEEEEEeCCCeEEEEECCC---ceeEEecc
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD-----GKYILTGGEDDLVQVWSMED---RKVVAWGE 380 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd-----g~~l~sgs~dg~I~vwd~~~---~~~~~~~~ 380 (548)
.+|.++++|+.||.|.|..+-+.+..+++. ...++.+++++|| .+.+++|+.-| +.++.-+- ...+ .+.
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~ 157 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLS 157 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eee
Confidence 579999999999999999998888777665 4578999999998 45789999888 66664321 1122 345
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.-.++|.++.|. | .+|+-+..+| |++||+.+++.+..++.
T Consensus 158 ~~eG~I~~i~W~---------g------~lIAWand~G-v~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 158 EGEGPIHSIKWR---------G------NLIAWANDDG-VKVYDTPTRQRLTNIPP 197 (846)
T ss_pred cCccceEEEEec---------C------cEEEEecCCC-cEEEeccccceeeccCC
Confidence 567899999994 4 5677666555 99999999888766654
No 327
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.09 E-value=7.3e-05 Score=78.65 Aligned_cols=180 Identities=14% Similarity=0.148 Sum_probs=122.2
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGV 389 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v 389 (548)
++..++.|+....+..+|+++.+......-..+.|.- +..+++++.+|...|.|.+-|.++.+.++++..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~i--mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTI--MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEE--EEecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4456777887788999999988877665544444443 44578899999999999999999999999999999999988
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeC---------CCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeee
Q 008939 390 AFDSYWSQPNSDGTAETVMYRFGSVGQ---------DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 460 (548)
Q Consensus 390 ~~~p~~~~~~~dg~~~~~~~~l~s~~~---------Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 460 (548)
.. .| ++|++||. |.-|++||+++-+.+..+.......-+.|.|.= ...+.+
T Consensus 224 Dv---------~G------NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl-----~t~~~V 283 (1118)
T KOG1275|consen 224 DV---------QG------NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSL-----TTRLAV 283 (1118)
T ss_pred ec---------cC------CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccc-----cceEEE
Confidence 87 44 68888874 556899999998877776653222222232221 112222
Q ss_pred cccCCCCceeecCCC-Cc-eEEee--cCCCCeeEEEEeCC--eEEEEECCCeEEEEe
Q 008939 461 GTLQPAPSMRDVPKL-SP-LVAHR--VHTEPLSGLIFTQE--SVLTVCREGHIKIWM 511 (548)
Q Consensus 461 g~~~~~~~~~d~~~~-~~-~~~~~--~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~ 511 (548)
.+..+...+-|.... .| ...+. .....+..+.++++ .++-+-.+|.|.+|.
T Consensus 284 ~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 284 TSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 222222223331111 11 11222 22344888999986 499999999999998
No 328
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.05 E-value=0.0034 Score=63.03 Aligned_cols=193 Identities=16% Similarity=0.221 Sum_probs=101.0
Q ss_pred CCCCCEEEEe----------cCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 139 DGKGTYIIFN----------VGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 139 ~~~g~~l~~~----------~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
|||++++++. ....+.|+|++++. +..+.-.........|+|+ ++.++.. .++.|+++++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~---~~~l~~~~~~~~~~~~sP~---g~~~~~v-~~~nly~~~~~~~ 73 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE---ITPLTPPPPKLQDAKWSPD---GKYIAFV-RDNNLYLRDLATG 73 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE---EEESS-EETTBSEEEE-SS---STEEEEE-ETTEEEEESSTTS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc---eEECcCCccccccceeecC---CCeeEEE-ecCceEEEECCCC
Confidence 5788888873 23368899999744 3333323567889999999 6666655 4679999987542
Q ss_pred ccccccceeeee---------eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 209 LQDVGKKLVGAH---------HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 209 ~~~~~~~~~~~~---------~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
....+.... .+.-+.+ .-+.-..+-|+||++.++..--.+..|..+.+.........+
T Consensus 74 ---~~~~lT~dg~~~i~nG~~dwvyeEE-v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~y--------- 140 (353)
T PF00930_consen 74 ---QETQLTTDGEPGIYNGVPDWVYEEE-VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQY--------- 140 (353)
T ss_dssp ---EEEESES--TTTEEESB--HHHHHH-TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS---------
T ss_pred ---CeEEeccccceeEEcCccceecccc-ccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccC---------
Confidence 001111000 0000000 022346789999999544445566666666654311100000
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEE-ee----eecCCceEEEEEccCCC
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC-GG----KSYYGALLCCAWSMDGK 354 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~-~~----~~~~~~v~~l~~spdg~ 354 (548)
-.+..+.+-.-|.-.... .|.|+|+.+++... .. ..-...+..+.|.++++
T Consensus 141 --------------------p~~~~~~YPk~G~~np~v----~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~ 196 (353)
T PF00930_consen 141 --------------------PEVESIRYPKAGDPNPRV----SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGK 196 (353)
T ss_dssp ---------------------EEEEEE--BTTS---EE----EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTE
T ss_pred --------------------CcccccccCCCCCcCCce----EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCc
Confidence 124445543233322222 47888998876532 11 22345788999999998
Q ss_pred EEEE--EeCC---CeEEEEECCCcee
Q 008939 355 YILT--GGED---DLVQVWSMEDRKV 375 (548)
Q Consensus 355 ~l~s--gs~d---g~I~vwd~~~~~~ 375 (548)
.|+. ...+ -.+.++|..+++.
T Consensus 197 ~l~~~~~nR~q~~~~l~~~d~~tg~~ 222 (353)
T PF00930_consen 197 RLWVQWLNRDQNRLDLVLCDASTGET 222 (353)
T ss_dssp EEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred EEEEEEcccCCCEEEEEEEECCCCce
Confidence 4443 3333 2477778877644
No 329
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.04 E-value=1.7e-06 Score=87.11 Aligned_cols=207 Identities=14% Similarity=0.189 Sum_probs=131.7
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe----
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH---- 250 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~---- 250 (548)
.+.|+++.-+.. ...+++|..+|.|.+-.++..- +.....+ ..+...|++++|++-+.+.||+|.
T Consensus 58 y~kcva~~y~~d-~cIlavG~atG~I~l~s~r~~h-dSs~E~t---------p~~ar~Ct~lAwneLDtn~LAagldkhr 126 (783)
T KOG1008|consen 58 YVKCVASFYGND-RCILAVGSATGNISLLSVRHPH-DSSAEVT---------PGYARPCTSLAWNELDTNHLAAGLDKHR 126 (783)
T ss_pred CceeehhhcCCc-hhhhhhccccCceEEeecCCcc-cccceec---------ccccccccccccccccHHHHHhhhhhhc
Confidence 566777766532 4578999999999999887621 1111111 126789999999997665788775
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.|-.+.|||+.+.-. .+.. ...|.. .-.....+++|-.+.+++.+|.....+.++|++.
T Consensus 127 nds~~~Iwdi~s~lt-----vPke-~~~fs~---------------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLT-----VPKE-SPLFSS---------------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred ccCCccceecccccC-----CCcc-cccccc---------------ccccCccccccccCcchhhcccccchhhhhhhhh
Confidence 367899999976211 0000 000000 0113455888888899999999999999999983
Q ss_pred CeEEEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEE-CCCc-eeEEeccCCC----CCeEEEEEecCCCCCCCCCC
Q 008939 331 EQLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWS-MEDR-KVVAWGEGHN----SWVSGVAFDSYWSQPNSDGT 403 (548)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd-~~~~-~~~~~~~~h~----~~V~~v~~~p~~~~~~~dg~ 403 (548)
.. .....-.+..+..+...| .+.++++-. |+.|.+|| .++- .++..+...+ ..+..++|+|. ..|
T Consensus 186 s~-~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt-----rtg- 257 (783)
T KOG1008|consen 186 SL-DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT-----RTG- 257 (783)
T ss_pred hh-hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC-----Ccc-
Confidence 22 111111233456677788 666776665 99999999 3332 2333333222 24899999982 133
Q ss_pred ccceeEEEEEEeCC-CeEEEEECCC
Q 008939 404 AETVMYRFGSVGQD-TRLLLWDLEM 427 (548)
Q Consensus 404 ~~~~~~~l~s~~~D-g~i~lwd~~~ 427 (548)
++++...| +.|+++|+..
T Consensus 258 ------lla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 258 ------LLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ------hhhhhccCcceEEEecccc
Confidence 56666655 7899999863
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.99 E-value=0.0057 Score=61.76 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=89.5
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC-CCccccc------------ccceeeeecCCC----CCCCCeeE
Q 008939 232 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD-SSFPVIK------------DQTQFSVAHPRY----SKSNPIAR 294 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~------------~~~~~~~~~~~~----~~~~~~~~ 294 (548)
.|+.+.|.++.. .|++|...|.|.||......... ...+... ...-..+.+... ....|...
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 588999999987 89999999999999886533221 1111000 011111111110 12456777
Q ss_pred eeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee--e------cCCceEEEEEcc-----CC---CEEEE
Q 008939 295 WHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK--S------YYGALLCCAWSM-----DG---KYILT 358 (548)
Q Consensus 295 ~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~--~------~~~~v~~l~~sp-----dg---~~l~s 358 (548)
++..+++|++++.|.= -++|.|..+|.|.|.|++....+..-. . ....++++.|.- |+ -.|++
T Consensus 82 ~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 7888999999999744 499999999999999998877776522 1 234677888863 33 36889
Q ss_pred EeCCCeEEEEECC--C-ce----eEEeccCCCCCeEEEE
Q 008939 359 GGEDDLVQVWSME--D-RK----VVAWGEGHNSWVSGVA 390 (548)
Q Consensus 359 gs~dg~I~vwd~~--~-~~----~~~~~~~h~~~V~~v~ 390 (548)
|.+.|.+.+|.+. . +. .......+.+.|..|.
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~ 199 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII 199 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE
Confidence 9999999999874 1 21 1222224566666655
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0014 Score=69.06 Aligned_cols=150 Identities=22% Similarity=0.280 Sum_probs=98.3
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCC-eEEEEECCCCCEEE
Q 008939 237 TWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS-INSIAFSTDGTYLA 315 (548)
Q Consensus 237 ~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~g~~l~ 315 (548)
+|++.+. .++.|+.+|.|.+++-.- ..++.|+.+... |..+....+..+|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s~---------------------------~~~~~fqa~~~siv~~L~~~~~~~~L~ 81 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSSF---------------------------QLIRGFQAYEQSIVQFLYILNKQNFLF 81 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecccc---------------------------eeeehheecchhhhhHhhcccCceEEE
Confidence 3566666 899999999998887542 234556666666 43343333446788
Q ss_pred EEECCC-----eEEEEeCCCC------eEEE--eeee-----cCCceEEEEEccCCCEEEEEeCCCeEEEEECC---C-c
Q 008939 316 TVGRDG-----YLRVFDYSKE------QLIC--GGKS-----YYGALLCCAWSMDGKYILTGGEDDLVQVWSME---D-R 373 (548)
Q Consensus 316 s~~~dg-----~v~vwd~~~~------~~~~--~~~~-----~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~---~-~ 373 (548)
+.+.|+ .|+|||++.- +++. .+.. ...++.+++.+.+-+.+|+|-.||.|..+.-+ + +
T Consensus 82 sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 82 SVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred EEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc
Confidence 877765 4899999632 2331 1111 24578899999999999999999999998532 1 1
Q ss_pred eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 374 KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 374 ~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
....-...-..+|+++.|.. |+ ..++-+.....|.+|.+..
T Consensus 162 sr~~~~~~~~~pITgL~~~~-------d~------~s~lFv~Tt~~V~~y~l~g 202 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRS-------DG------KSVLFVATTEQVMLYSLSG 202 (933)
T ss_pred cceeeeccCCCCceeeEEec-------CC------ceeEEEEecceeEEEEecC
Confidence 12222223568999999987 77 2323333346788888873
No 332
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.98 E-value=3.3e-06 Score=85.17 Aligned_cols=158 Identities=20% Similarity=0.246 Sum_probs=106.3
Q ss_pred CcceEEEEEecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 230 NSRCTSVTWVPGGD-GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 230 ~~~v~~l~~~p~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
...+.|+++.-+.+ .++++|..+|.|-+-.++....... .....|...+++++|+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~------------------------E~tp~~ar~Ct~lAwn 111 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSA------------------------EVTPGYARPCTSLAWN 111 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccc------------------------eecccccccccccccc
Confidence 34566777765443 4899999999999998876332211 1112344789999999
Q ss_pred C-CCCEEEEEE----CCCeEEEEeCCCCe--EE--Eeeee-cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEe
Q 008939 309 T-DGTYLATVG----RDGYLRVFDYSKEQ--LI--CGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 309 p-~g~~l~s~~----~dg~v~vwd~~~~~--~~--~~~~~-~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~ 378 (548)
+ |.+.||.|- .|..+.|||+.++- +. ..+.+ ......+++|..+.+++.+|.....++++|++..... .
T Consensus 112 eLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~ 190 (783)
T KOG1008|consen 112 ELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-V 190 (783)
T ss_pred cccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh-h
Confidence 8 777888774 35679999998761 11 11222 3345668899999999999999999999999843211 1
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
..-.+..|..+..+|+ .+ .++++-. |+.|-+||.
T Consensus 191 ~svnTk~vqG~tVdp~------~~------nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 191 SSVNTKYVQGITVDPF------SP------NYFCSNS-DGDIAIWDT 224 (783)
T ss_pred hhhhhhhcccceecCC------CC------Cceeccc-cCceeeccc
Confidence 1113445667777774 33 3666555 999999993
No 333
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.98 E-value=0.012 Score=60.18 Aligned_cols=207 Identities=15% Similarity=0.131 Sum_probs=110.5
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNS 231 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (548)
.|+||+... +++.++.+....+.++.|+.+ ..|++-..||.++++|+.... ... ...-.....+...
T Consensus 62 ~I~iys~sG---~ll~~i~w~~~~iv~~~wt~~----e~LvvV~~dG~v~vy~~~G~~-----~fs-l~~~i~~~~v~e~ 128 (410)
T PF04841_consen 62 SIQIYSSSG---KLLSSIPWDSGRIVGMGWTDD----EELVVVQSDGTVRVYDLFGEF-----QFS-LGEEIEEEKVLEC 128 (410)
T ss_pred EEEEECCCC---CEeEEEEECCCCEEEEEECCC----CeEEEEEcCCEEEEEeCCCce-----eec-hhhhccccCcccc
Confidence 489999874 488999998899999999875 357888899999999986421 000 0000001111222
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC
Q 008939 232 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 311 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g 311 (548)
.+....+..+| +++ -..++.+++.+-.........++... .. ......+.....-..++.+.
T Consensus 129 ~i~~~~~~~~G--ivv-Lt~~~~~~~v~n~~~~~~~~~~~~~p--~~-------------~~~~~~~~~~~~i~~l~~~~ 190 (410)
T PF04841_consen 129 RIFAIWFYKNG--IVV-LTGNNRFYVVNNIDEPVKLRRLPEIP--GL-------------WTKFHWWPSWTVIPLLSSDR 190 (410)
T ss_pred cccccccCCCC--EEE-ECCCCeEEEEeCccccchhhccccCC--Cc-------------ccccccccccccceEeecCc
Confidence 33333333344 233 23455555543222110000111000 00 00000000000003344455
Q ss_pred CEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC-CCCeEEEE
Q 008939 312 TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH-NSWVSGVA 390 (548)
Q Consensus 312 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-~~~V~~v~ 390 (548)
...+....++.+.+.+-...+. +. ..+++..++.||++++||.-..+|.+.+.+.+-.+.+..+.-. .....++.
T Consensus 191 ~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~ 266 (410)
T PF04841_consen 191 VVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMA 266 (410)
T ss_pred ceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEE
Confidence 5555555556666444332211 22 2467999999999999999999999999987666666555432 23445666
Q ss_pred Eec
Q 008939 391 FDS 393 (548)
Q Consensus 391 ~~p 393 (548)
|+-
T Consensus 267 WCG 269 (410)
T PF04841_consen 267 WCG 269 (410)
T ss_pred EEC
Confidence 643
No 334
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.95 E-value=0.033 Score=58.56 Aligned_cols=291 Identities=11% Similarity=0.059 Sum_probs=145.7
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcce--EEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRC--TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 265 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~ 265 (548)
+..++++..++.|+-+|.++ ++.+.....-..... ....+ ..+... ++. .++.++.+|.|+.+|.++ ++
T Consensus 61 ~g~vy~~~~~g~l~AlD~~t-----G~~~W~~~~~~~~~~-~~~~~~~~g~~~~-~~~-~V~v~~~~g~v~AlD~~T-G~ 131 (488)
T cd00216 61 DGDMYFTTSHSALFALDAAT-----GKVLWRYDPKLPADR-GCCDVVNRGVAYW-DPR-KVFFGTFDGRLVALDAET-GK 131 (488)
T ss_pred CCEEEEeCCCCcEEEEECCC-----ChhhceeCCCCCccc-cccccccCCcEEc-cCC-eEEEecCCCeEEEEECCC-CC
Confidence 44678888889999999876 333322110000000 00000 011111 213 688888999999999887 44
Q ss_pred CCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC--CCCEEEEEE---------CCCeEEEEeCCCCeEE
Q 008939 266 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST--DGTYLATVG---------RDGYLRVFDYSKEQLI 334 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~~---------~dg~v~vwd~~~~~~~ 334 (548)
....+....... .-..+.-+| .+.+++.++ .++.|..+|..+++.+
T Consensus 132 ~~W~~~~~~~~~-----------------------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 132 QVWKFGNNDQVP-----------------------PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred EeeeecCCCCcC-----------------------cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 333332111000 000011111 123444443 3688999999999988
Q ss_pred EeeeecCCc--------------------e-EEEEEccCCCEEEEEeCCC------------------eEEEEECCCcee
Q 008939 335 CGGKSYYGA--------------------L-LCCAWSMDGKYILTGGEDD------------------LVQVWSMEDRKV 375 (548)
Q Consensus 335 ~~~~~~~~~--------------------v-~~l~~spdg~~l~sgs~dg------------------~I~vwd~~~~~~ 375 (548)
..++..... + ...++.+.+..++.++.++ .|.-+|.++++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 776542110 0 1234444566788887665 688999999988
Q ss_pred EEecc--CCCCCe----EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCC----CCcee
Q 008939 376 VAWGE--GHNSWV----SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG----GSPTF 445 (548)
Q Consensus 376 ~~~~~--~h~~~V----~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~----~~~~~ 445 (548)
+-.++ .|..+. ....+.+. ...+|. ....++.++.+|.+...|.++|+.+...+..... ....+
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~---~~~~g~---~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vy 342 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADI---KPKDGK---PVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVY 342 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEec---cccCCC---eeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceEE
Confidence 76654 222111 00111100 000331 1136777888999999999999998876542000 01111
Q ss_pred cCCCCc--cccC--CeeeecccCCCCceeecCCCCceEEeecCC--------CCe--eEEEEeCCeEEEEECCCeEEEEe
Q 008939 446 STGSQS--AHWD--NVCPVGTLQPAPSMRDVPKLSPLVAHRVHT--------EPL--SGLIFTQESVLTVCREGHIKIWM 511 (548)
Q Consensus 446 ~~~~~~--~~~d--~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~--------~~V--~~l~fspd~l~t~s~Dg~I~iW~ 511 (548)
...... ...+ ........++.+...|+.+.+.+-...... .+. ..+....+.|+.++.||.|+.+|
T Consensus 343 v~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 343 LGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 110000 0000 000000112233344555554443333210 111 12344556788889999999999
Q ss_pred CCCCC
Q 008939 512 RPGVA 516 (548)
Q Consensus 512 ~~~~~ 516 (548)
..+++
T Consensus 423 ~~tG~ 427 (488)
T cd00216 423 ATTGK 427 (488)
T ss_pred CCCCc
Confidence 88776
No 335
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.91 E-value=0.0061 Score=57.13 Aligned_cols=218 Identities=11% Similarity=0.153 Sum_probs=109.9
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC--eEEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD--AIFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d--~v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
..+-...+..++|+|+...|++-.+. .|...+++ + +.++.+.+.. ...-.+++.-+ +.++++--.++.+++
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G--~vlr~i~l~g~~D~EgI~y~g~---~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G--KVLRRIPLDGFGDYEGITYLGN---GRYVLSEERDQRLYI 90 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-ST---TEEEEEETTTTEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C--CEEEEEeCCCCCCceeEEEECC---CEEEEEEcCCCcEEE
Confidence 33444557889999987766554444 77666764 2 4788888765 45777888655 555555445889999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
+++..........-......... ..++..+-.++|.|.++ .|+++-...-..+|.++..... ..+..... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~-~~~~~~~~-~----- 161 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGG-FDLFVSDD-Q----- 161 (248)
T ss_dssp EEE----TT--EEEEEEEE---S----SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-S-S--EEEE--H-----
T ss_pred EEEeccccccchhhceEEecccc-cCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCc-cceeeccc-c-----
Confidence 99854211111111111111111 12466789999999988 5556666666777776541100 00000000 0
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecC---------CceEEEEEccC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYY---------GALLCCAWSMD 352 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~---------~~v~~l~~spd 352 (548)
.+..-......+.+++++| .+++++.......|..+| .+|+.+..+.-.. ...-.|+|.++
T Consensus 162 --------~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~ 232 (248)
T PF06977_consen 162 --------DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPD 232 (248)
T ss_dssp --------HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT
T ss_pred --------ccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCC
Confidence 0000011124578899999 566777777888899999 5577655443221 24678999999
Q ss_pred CCEEEEEeCCCeEEEE
Q 008939 353 GKYILTGGEDDLVQVW 368 (548)
Q Consensus 353 g~~l~sgs~dg~I~vw 368 (548)
|++.++ ++-+..+++
T Consensus 233 G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 233 GNLYIV-SEPNLFYRF 247 (248)
T ss_dssp --EEEE-ETTTEEEEE
T ss_pred CCEEEE-cCCceEEEe
Confidence 965444 466655554
No 336
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.0051 Score=63.61 Aligned_cols=123 Identities=13% Similarity=0.190 Sum_probs=85.9
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
|...+..-+++..+++++.++.. .|++|+-..+... .....+....+.....+++ ..++++|+..|.|.++.+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~---e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSV---EYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecch---hHhhhhhcCCceEEeehhhc
Confidence 45556677888899999998876 9999997764321 1222223334444556666 56788999999999998765
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK 262 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~ 262 (548)
.. ...... +.+....|+..|++++|++++. .|++|...|+|.+-.++.
T Consensus 108 ~~-p~~~~~-----~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 108 EL-PRDLDY-----VTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cC-CCccee-----eccccccCCceEEEEEeccccc-EEeecCCCceEEEEEech
Confidence 21 111111 1122223899999999999999 899999999999988876
No 337
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.0019 Score=65.78 Aligned_cols=199 Identities=16% Similarity=0.166 Sum_probs=108.2
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC-CcEEEEEeeecccccccceeeeeeeccCCcccC
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS-GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNN 230 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d-g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (548)
.+++-|.+. .....+......+..-+|+|+++.-.++..-... ..|+++|+... ....+.. ..
T Consensus 174 ~l~~~D~dg---~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g---~~~~i~~----------~~ 237 (425)
T COG0823 174 ELALGDYDG---YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG---KRPVILN----------FN 237 (425)
T ss_pred eEEEEccCC---cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCC---ccceeec----------cC
Confidence 445555442 1233333344566667888885432223222333 35999998872 1222221 13
Q ss_pred cceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC
Q 008939 231 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD 310 (548)
Q Consensus 231 ~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 310 (548)
..-..-+|+|||+.++++...||...||-++..+.....+. .-.+.-..-.|+||
T Consensus 238 g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt-------------------------~~~gi~~~Ps~spd 292 (425)
T COG0823 238 GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLT-------------------------NGFGINTSPSWSPD 292 (425)
T ss_pred CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecc-------------------------cCCccccCccCCCC
Confidence 34456689999997778888888766555443332211111 01122225679999
Q ss_pred CCEEEEEEC-CCe--EEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC-Ce--EEEEECCCceeEEeccCCCC
Q 008939 311 GTYLATVGR-DGY--LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED-DL--VQVWSMEDRKVVAWGEGHNS 384 (548)
Q Consensus 311 g~~l~s~~~-dg~--v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d-g~--I~vwd~~~~~~~~~~~~h~~ 384 (548)
|++|+..+. .|. |.++|.+.+... .+....+.-..-.|+|||++|+..+.. |. |.+.|+.++..+..+. +..
T Consensus 293 G~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~ 370 (425)
T COG0823 293 GSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STY 370 (425)
T ss_pred CCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccc
Confidence 998887754 344 556666655442 222222222377899999998877643 33 6667776655333333 233
Q ss_pred CeEEEEEec
Q 008939 385 WVSGVAFDS 393 (548)
Q Consensus 385 ~V~~v~~~p 393 (548)
....-.|.|
T Consensus 371 ~~e~ps~~~ 379 (425)
T COG0823 371 LNESPSWAP 379 (425)
T ss_pred cCCCCCcCC
Confidence 333344555
No 338
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00016 Score=73.33 Aligned_cols=93 Identities=17% Similarity=0.137 Sum_probs=79.3
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceE-EEEEccCCCEEEEEeCCCeEEEEECCCceeEEe
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL-CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~-~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~ 378 (548)
..|.-+.|+|.-.++|++..+|.|.++.+. .+.+.++.-+...++ +++|.|||+.||+|-.||+|++.|++++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 567889999999999999999999999998 777888876766777 999999999999999999999999999887765
Q ss_pred c-cCCCCCeEEEEEec
Q 008939 379 G-EGHNSWVSGVAFDS 393 (548)
Q Consensus 379 ~-~~h~~~V~~v~~~p 393 (548)
+ ..-...|.++.|.|
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 2 22556788888864
No 339
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.71 E-value=0.0017 Score=69.98 Aligned_cols=150 Identities=18% Similarity=0.393 Sum_probs=99.9
Q ss_pred CCCCEEEEecCC--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCC----CCceEEEEEcCCcEEEEEeeecccccc
Q 008939 140 GKGTYIIFNVGD--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAK----DGHDLLIGLNSGDVYSVSLRQQLQDVG 213 (548)
Q Consensus 140 ~~g~~l~~~~~d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~----~~~~l~~g~~dg~I~iwdl~~~~~~~~ 213 (548)
.+-..|+....+ .|+-.|++.+. .|....++...+ ...|.|+.+ .....++|..+..|+.||.|-. +
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~GK--VV~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~----~ 563 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLERGK--VVEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS----G 563 (794)
T ss_pred cccceEeecCCCCCceEEEecCCCc--EEEEeecCCCcc-eeEecccccccccCCCceEEEECCCceEEeccCCC----C
Confidence 344445554433 88888998865 888888776543 556666644 2456789999999999999852 1
Q ss_pred cceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCee
Q 008939 214 KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIA 293 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (548)
.+++... .+.. ..+...+|++=..+| .||+|+.+|.||+||-- +.+....++.+
T Consensus 564 ~k~v~~~--~k~Y-~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~AKT~lp~l-------------------- 617 (794)
T PF08553_consen 564 NKLVDSQ--SKQY-SSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GKRAKTALPGL-------------------- 617 (794)
T ss_pred Cceeecc--cccc-ccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-chhhhhcCCCC--------------------
Confidence 2332111 0111 245567888877777 69999999999999942 22222233322
Q ss_pred EeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeC
Q 008939 294 RWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDY 328 (548)
Q Consensus 294 ~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~ 328 (548)
..+|.+|+.+.||++|+..+ +..|.+++.
T Consensus 618 -----G~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 618 -----GDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred -----CCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 27899999999999887665 557777775
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.00031 Score=73.40 Aligned_cols=111 Identities=18% Similarity=0.298 Sum_probs=86.9
Q ss_pred EEEEEecCCCcEEEEEe----CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 234 TSVTWVPGGDGAFVVGH----ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 234 ~~l~~~p~~~~~l~s~~----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
+-..|+|..+ +|++++ ..|.|.||--.-+......+| -.+++++|+|
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfadtGEPqr~Vt~P----------------------------~hatSLCWHp 69 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFADTGEPQRDVTYP----------------------------VHATSLCWHP 69 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEecCCCCCcccccc----------------------------eehhhhccCh
Confidence 4567999999 888876 358888885432211111121 2255799999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR 373 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~ 373 (548)
..-.|+.+-.-|.+.+|...+.+.-.....|..+|..+.||++|..|+++..-|.|.+|.....
T Consensus 70 e~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 70 EEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred HHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 9888999999999999999877766666779999999999999999999999999999988743
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.65 E-value=0.025 Score=57.10 Aligned_cols=231 Identities=15% Similarity=0.112 Sum_probs=118.6
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc------c--------------cceeeeee-eccC--------
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV------G--------------KKLVGAHH-YNKD-------- 225 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~------~--------------~~~~~~~~-~~~~-------- 225 (548)
.|+.+.|.++ ...|++|..+|+|.+|......... . ..+....+ ..+.
T Consensus 3 ~v~~vs~a~~---t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~ 79 (395)
T PF08596_consen 3 SVTHVSFAPE---TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPL 79 (395)
T ss_dssp -EEEEEEETT---TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEE
T ss_pred eEEEEEecCC---CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCch
Confidence 4678888888 5569999999999998876531111 0 00000000 0000
Q ss_pred --CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeE
Q 008939 226 --GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSIN 303 (548)
Q Consensus 226 --~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 303 (548)
.....++|++++.+.-| ++++|+.+|.+.|.|++.. ..... ..+.+ ...-......|+
T Consensus 80 ~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGP-avI~~-~~i~~----------------~~~~~~~~~~vt 139 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGP-AVIYN-ENIRE----------------SFLSKSSSSYVT 139 (395)
T ss_dssp EEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTT-EEEEE-EEGGG------------------T-SS----EE
T ss_pred hheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCC-eEEee-ccccc----------------cccccccccCee
Confidence 01247899999998766 7999999999999999742 11111 00000 000001124577
Q ss_pred EEEECC-----CC---CEEEEEECCCeEEEEeCC--C-CeE----EEeeeecCCceEEEE-EccC---------------
Q 008939 304 SIAFST-----DG---TYLATVGRDGYLRVFDYS--K-EQL----ICGGKSYYGALLCCA-WSMD--------------- 352 (548)
Q Consensus 304 ~~~~sp-----~g---~~l~s~~~dg~v~vwd~~--~-~~~----~~~~~~~~~~v~~l~-~spd--------------- 352 (548)
++.|.- |+ -.|++|+..|.+.+|.+. . +.. ......+.+.|..+. ++.+
T Consensus 140 ~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l 219 (395)
T PF08596_consen 140 SIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGL 219 (395)
T ss_dssp EEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGG
T ss_pred EEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcc
Confidence 777752 33 368889999999999874 1 211 111223556665554 3221
Q ss_pred --C---CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 353 --G---KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 353 --g---~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
| +-+++...+..|+++..-+.+..+......-....+.+-+.- + ......|++-..+|.|+++.+..
T Consensus 220 ~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~-----~---~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 220 SKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTI-----S---RNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp GGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE---------EEEEEEEEEEETTSEEEEEETTT
T ss_pred ccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeec-----c---cCCceEEEEEECCCcEEEEECCC
Confidence 1 123444457799999998877665554232333344452100 0 01126788889999999999998
Q ss_pred CeEEeeeec
Q 008939 428 DEIVVPLRR 436 (548)
Q Consensus 428 ~~~~~~~~~ 436 (548)
-+.+..+..
T Consensus 292 Lkei~~~~l 300 (395)
T PF08596_consen 292 LKEIKSVSL 300 (395)
T ss_dssp --EEEEEE-
T ss_pred chHhhcccC
Confidence 777776665
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.63 E-value=0.03 Score=52.52 Aligned_cols=206 Identities=15% Similarity=0.209 Sum_probs=108.9
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
..++..++|+|+. +.++++....+.|+.+++.. +++....+. .....-.|++..++. ++++.-.+
T Consensus 21 ~~e~SGLTy~pd~--~tLfaV~d~~~~i~els~~G-------~vlr~i~l~-----g~~D~EgI~y~g~~~-~vl~~Er~ 85 (248)
T PF06977_consen 21 LDELSGLTYNPDT--GTLFAVQDEPGEIYELSLDG-------KVLRRIPLD-----GFGDYEGITYLGNGR-YVLSEERD 85 (248)
T ss_dssp -S-EEEEEEETTT--TEEEEEETTTTEEEEEETT---------EEEEEE-S-----S-SSEEEEEE-STTE-EEEEETTT
T ss_pred cCCccccEEcCCC--CeEEEEECCCCEEEEEcCCC-------CEEEEEeCC-----CCCCceeEEEECCCE-EEEEEcCC
Confidence 3468899999973 45777777778887777643 233333221 134567888887775 55555568
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC--
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK-- 330 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-- 330 (548)
+.++++++........... ...+.+. .-..++..+..++|++.++.|+.+-...-.++|.+..
T Consensus 86 ~~L~~~~~~~~~~~~~~~~----~~~~~l~-----------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~ 150 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSLDRAD----VQKISLG-----------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP 150 (248)
T ss_dssp TEEEEEEE----TT--EEE----EEEEE--------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred CcEEEEEEeccccccchhh----ceEEecc-----------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Confidence 9999999965332211100 0001100 0012346789999999877777777776677776653
Q ss_pred -CeEEE--ee------eecCCceEEEEEccCC-CEEEEEeCCCeEEEEECCCceeEEeccCCC---------CCeEEEEE
Q 008939 331 -EQLIC--GG------KSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKVVAWGEGHN---------SWVSGVAF 391 (548)
Q Consensus 331 -~~~~~--~~------~~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~---------~~V~~v~~ 391 (548)
...+. .. ......+..++++|.. ++++...+...|.++| .+++.+..+.-.. ..-..|+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~ 229 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAF 229 (248)
T ss_dssp -SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred CccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEE
Confidence 11111 11 1123457889999865 5666677788999999 5677665543111 34678999
Q ss_pred ecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 008939 392 DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 423 (548)
Q Consensus 392 ~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lw 423 (548)
++ +| .|...++-+...+|
T Consensus 230 d~-------~G-------~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 230 DP-------DG-------NLYIVSEPNLFYRF 247 (248)
T ss_dssp -T-------T---------EEEEETTTEEEEE
T ss_pred CC-------CC-------CEEEEcCCceEEEe
Confidence 99 88 34445565554443
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.59 E-value=0.016 Score=59.39 Aligned_cols=148 Identities=17% Similarity=0.256 Sum_probs=83.3
Q ss_pred EEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEE
Q 008939 167 KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAF 246 (548)
Q Consensus 167 ~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l 246 (548)
+.+--....|..+.++|+ ++.+++ ..+|.-.|+.... .+.. ..+......|.+.+ .+
T Consensus 26 k~lg~~~~~p~~ls~npn---gr~v~V-~g~geY~iyt~~~-----~r~k------------~~G~g~~~vw~~~n--~y 82 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPN---GRFVLV-CGDGEYEIYTALA-----WRNK------------AFGSGLSFVWSSRN--RY 82 (443)
T ss_dssp EEEEE-SS--SEEEE-TT---SSEEEE-EETTEEEEEETTT-----TEEE------------EEEE-SEEEE-TSS--EE
T ss_pred ccCCCCCcCCeeEEECCC---CCEEEE-EcCCEEEEEEccC-----Cccc------------ccCceeEEEEecCc--cE
Confidence 333334556899999998 777777 6677777776221 0110 24556788999955 58
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 008939 247 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVF 326 (548)
Q Consensus 247 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vw 326 (548)
|+-.....|.|+.--++.. ...++. ...+..+-. |.+|+..+.+ .|.+|
T Consensus 83 Av~~~~~~I~I~kn~~~~~-~k~i~~--------------------------~~~~~~If~---G~LL~~~~~~-~i~~y 131 (443)
T PF04053_consen 83 AVLESSSTIKIYKNFKNEV-VKSIKL--------------------------PFSVEKIFG---GNLLGVKSSD-FICFY 131 (443)
T ss_dssp EEE-TTS-EEEEETTEE-T-T-------------------------------SS-EEEEE----SSSEEEEETT-EEEEE
T ss_pred EEEECCCeEEEEEcCcccc-ceEEcC--------------------------CcccceEEc---CcEEEEECCC-CEEEE
Confidence 8888889999974322111 001110 012333322 7777777655 89999
Q ss_pred eCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 008939 327 DYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME 371 (548)
Q Consensus 327 d~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~ 371 (548)
|+.+++.+..+... +|..+.|++++++++..+.+ .+.|++.+
T Consensus 132 Dw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 132 DWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp -TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred EhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 99999999887633 48999999999999988755 77776654
No 344
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.54 E-value=0.059 Score=52.42 Aligned_cols=213 Identities=15% Similarity=0.092 Sum_probs=118.5
Q ss_pred EEeCCCCCEEEEec--CCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccc
Q 008939 136 TNFDGKGTYIIFNV--GDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVG 213 (548)
Q Consensus 136 ~~~~~~g~~l~~~~--~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~ 213 (548)
-.|.++...|++.. +..|.-|+..++. ...+. .+..+.+...-.. +..|+ ++.. .+++++++. +
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~---~~~~~-~p~~~~~~~~~d~---~g~Lv-~~~~-g~~~~~~~~-----~ 95 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGK---KRVFP-SPGGFSSGALIDA---GGRLI-ACEH-GVRLLDPDT-----G 95 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCc---eEEEE-CCCCcccceeecC---CCeEE-EEcc-ccEEEeccC-----C
Confidence 35777877666644 3388888887533 33444 3334433333222 22333 3333 345555533 1
Q ss_pred cceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC----------cEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 214 KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG----------NLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg----------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
...... ............+++...|+|. |..+.... .=.||.++..
T Consensus 96 ~~~t~~--~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~-------------------- 151 (307)
T COG3386 96 GKITLL--AEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPD-------------------- 151 (307)
T ss_pred ceeEEe--ccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCC--------------------
Confidence 111111 1111111346778899999987 55555442 0012222210
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCC--Ce----E-EEeeeecCCceEEEEEccCCCE
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR-DGYLRVFDYSK--EQ----L-ICGGKSYYGALLCCAWSMDGKY 355 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~~~--~~----~-~~~~~~~~~~v~~l~~spdg~~ 355 (548)
...++.+..|-..-+.++||||++.|+.+.. .+.|..|++.. +. . ...+....+..-.++...+|.+
T Consensus 152 -----g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l 226 (307)
T COG3386 152 -----GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL 226 (307)
T ss_pred -----CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE
Confidence 1222333333345678999999988877755 47788887752 11 1 1112223345556777788887
Q ss_pred EEEEeCCC-eEEEEECCCceeEEeccCCCCCeEEEEEe
Q 008939 356 ILTGGEDD-LVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392 (548)
Q Consensus 356 l~sgs~dg-~I~vwd~~~~~~~~~~~~h~~~V~~v~~~ 392 (548)
.+++..++ .|.+|+.+ ++++..+..+...+++++|-
T Consensus 227 w~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 227 WVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred EEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 65554444 99999998 88888888777889999993
No 345
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.52 E-value=0.0082 Score=62.68 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=72.7
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
......+.++|||+.+++++..+.+|.|+|+.+.......- + +.. ...+.......+ ....+|.+
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~--~-~~~-----------~~vvaevevGlG-PLHTaFDg 384 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK--I-KPR-----------DAVVAEPELGLG-PLHTAFDG 384 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc--C-Ccc-----------ceEEEeeccCCC-cceEEECC
Confidence 45677899999999666667779999999998732211000 0 000 111122222223 33578999
Q ss_pred CCCEEEEEECCCeEEEEeCCC----------CeEEEeeeecCCceEEE-----EEccCCCEEEEEe
Q 008939 310 DGTYLATVGRDGYLRVFDYSK----------EQLICGGKSYYGALLCC-----AWSMDGKYILTGG 360 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~----------~~~~~~~~~~~~~v~~l-----~~spdg~~l~sgs 360 (548)
+|+...+...|..|..||+.+ ...+..+.-|..+-.-. .-.|||++|++..
T Consensus 385 ~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 385 RGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred CCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 998888889999999999976 23444454444433222 2368999998864
No 346
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.51 E-value=0.088 Score=52.09 Aligned_cols=226 Identities=14% Similarity=0.131 Sum_probs=122.6
Q ss_pred eEEEEEccCCCCCCeEEEecCCC-CceEEEecCCCC----CCceEEEEEc---------C-CcEEEEEeeecccccccce
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNS-NPVCHAFDQDAK----DGHDLLIGLN---------S-GDVYSVSLRQQLQDVGKKL 216 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~-~~~~~~~~p~~~----~~~~l~~g~~---------d-g~I~iwdl~~~~~~~~~~~ 216 (548)
.|++.|..+ .+.+..+.+.+. .+++++.-.-.. ...+|++|+. . |.|+++++... .....++
T Consensus 3 ~i~l~d~~~--~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~-~~~~~~l 79 (321)
T PF03178_consen 3 SIRLVDPTT--FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES-PENNFKL 79 (321)
T ss_dssp EEEEEETTT--SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS------EE
T ss_pred EEEEEeCCC--CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcc-cccceEE
Confidence 467777766 447777766543 344443332111 1467888865 2 88999999862 0001111
Q ss_pred e--eeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeE
Q 008939 217 V--GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIAR 294 (548)
Q Consensus 217 ~--~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (548)
. .... .+++|++|+-. +. .|+++. .+.|++|++.... .+ .+...
T Consensus 80 ~~i~~~~-------~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~~----~l-------------------~~~~~ 125 (321)
T PF03178_consen 80 KLIHSTE-------VKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNSK----TL-------------------LKKAF 125 (321)
T ss_dssp EEEEEEE-------ESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETTS----SE-------------------EEEEE
T ss_pred EEEEEEe-------ecCcceEhhhh--CC-EEEEee-cCEEEEEEccCcc----cc-------------------hhhhe
Confidence 1 1111 47789998877 33 444443 4899999998632 00 11112
Q ss_pred eeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC-Ce-EEEeeee-cCCceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 008939 295 WHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK-EQ-LICGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSME 371 (548)
Q Consensus 295 ~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-~~-~~~~~~~-~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~ 371 (548)
++.+ ..+.++... +++++.|.....+.++.++. .. +...-+. ....++++.+-++++.++.+..+|.|.++...
T Consensus 126 ~~~~-~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 126 YDSP-FYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp E-BS-SSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ecce-EEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 2211 245555443 56999999888888875543 22 3222222 24468888888777899999999999999876
Q ss_pred C-------c--e--eEEeccCCCCCeEEE---EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 008939 372 D-------R--K--VVAWGEGHNSWVSGV---AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 423 (548)
Q Consensus 372 ~-------~--~--~~~~~~~h~~~V~~v---~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lw 423 (548)
. + + .+..+. ....|+++ .+.|. ..+........++-++.+|.|...
T Consensus 203 ~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~-----~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 203 PEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPR-----SGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS-------SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCCcccccccccceeEEEEE-CCCccceEEEEEeeec-----CCCCcccccceEEEEecCCEEEEE
Confidence 2 1 1 222333 34667777 33331 001000012457788888988743
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.092 Score=53.26 Aligned_cols=219 Identities=17% Similarity=0.167 Sum_probs=139.4
Q ss_pred eeEEeCCCCCEEEEec--CCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc---CCcEEEEEeeec
Q 008939 134 TNTNFDGKGTYIIFNV--GDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN---SGDVYSVSLRQQ 208 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~--~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~---dg~I~iwdl~~~ 208 (548)
..++.++.+..+.... .+.|.+.|.+.. ..+..+.... .+..++++|+ +..++++.. ++.|.+.|-.+
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~--~~~~~~~vG~-~P~~~~~~~~---~~~vYV~n~~~~~~~vsvid~~t- 149 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATN--TVLGSIPVGL-GPVGLAVDPD---GKYVYVANAGNGNNTVSVIDAAT- 149 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCccc--ceeeEeeecc-CCceEEECCC---CCEEEEEecccCCceEEEEeCCC-
Confidence 3567777777555433 349999997763 3555555433 8899999999 666777766 57787777654
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
.++..... . ...+ ..+++.|++...+++-..++.|.+.|........ .... .
T Consensus 150 -----~~~~~~~~---v---G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~-~-------------- 201 (381)
T COG3391 150 -----NKVTATIP---V---GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG-S-------------- 201 (381)
T ss_pred -----CeEEEEEe---c---CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc-c--------------
Confidence 22222211 1 1223 8999999999444444578999999966421110 0000 0
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECC---CeEEEEeCCCCeEEEe-eeecCCceEEEEEccCCCEEEEEeC-CC
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSKEQLICG-GKSYYGALLCCAWSMDGKYILTGGE-DD 363 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d---g~v~vwd~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~sgs~-dg 363 (548)
.... ......+.++|+++++...... +.+.+.|..++..... ...-......+..+|+|+.+.+... .+
T Consensus 202 -----~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~ 275 (381)
T COG3391 202 -----LVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGG 275 (381)
T ss_pred -----cccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCC
Confidence 0000 1334568899999976665443 5899999998877655 2211114567899999998888744 48
Q ss_pred eEEEEECCCceeEEeccCCC---CCeEEEEEec
Q 008939 364 LVQVWSMEDRKVVAWGEGHN---SWVSGVAFDS 393 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~---~~V~~v~~~p 393 (548)
.+.+.|..+.+....+.... ..+..+++.+
T Consensus 276 ~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 276 TVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred eEEEEeCCCCceeeeecccccccccceecccee
Confidence 99999999887776655332 2455666655
No 348
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.47 E-value=0.2 Score=52.68 Aligned_cols=261 Identities=16% Similarity=0.136 Sum_probs=135.9
Q ss_pred ceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcce-EEEEEecCCCcEEEEEe---------CCCcEEEE
Q 008939 189 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRC-TSVTWVPGGDGAFVVGH---------ADGNLYVY 258 (548)
Q Consensus 189 ~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~~p~~~~~l~s~~---------~dg~v~vw 258 (548)
..++++..+|.|+-+|.++ ++.+..... ..... ....+ ....+. + . ++++++ .+|.|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~T-----G~~~W~~~~-~~~~~-~~~~i~ssP~v~-~-~-~v~vg~~~~~~~~~~~~g~v~al 180 (488)
T cd00216 111 RKVFFGTFDGRLVALDAET-----GKQVWKFGN-NDQVP-PGYTMTGAPTIV-K-K-LVIIGSSGAEFFACGVRGALRAY 180 (488)
T ss_pred CeEEEecCCCeEEEEECCC-----CCEeeeecC-CCCcC-cceEecCCCEEE-C-C-EEEEeccccccccCCCCcEEEEE
Confidence 5788899999999999876 344332211 00000 00001 111121 1 2 455553 36788899
Q ss_pred EcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC-CCe-EEEEECCCCCEEEEEECCC---------------
Q 008939 259 EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ-GSI-NSIAFSTDGTYLATVGRDG--------------- 321 (548)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v-~~~~~sp~g~~l~s~~~dg--------------- 321 (548)
|..+ ++....++....... .... ......+..+. ..| ...++.+.+..++.++.++
T Consensus 181 D~~T-G~~~W~~~~~~~~~~-~~~~-----~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 181 DVET-GKLLWRFYTTEPDPN-AFPT-----WGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred ECCC-CceeeEeeccCCCcC-CCCC-----CCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence 9876 444444433211000 0000 00000000111 111 1345555566777776555
Q ss_pred ---eEEEEeCCCCeEEEeeeecCCceE------EEEEc----cCCC---EEEEEeCCCeEEEEECCCceeEEeccCCCCC
Q 008939 322 ---YLRVFDYSKEQLICGGKSYYGALL------CCAWS----MDGK---YILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 385 (548)
Q Consensus 322 ---~v~vwd~~~~~~~~~~~~~~~~v~------~l~~s----pdg~---~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~ 385 (548)
.|.-+|.++++.+..++.-...+. ...+. -++. .+++++.+|.+...|.++++.+-.....
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--- 330 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--- 330 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---
Confidence 799999999999877642111110 00111 1343 5788889999999999999887554311
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEE-----------------EeCCCeEEEEECCCCeEEeeeecCCCCCCcee---
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGS-----------------VGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTF--- 445 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s-----------------~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~--- 445 (548)
...+..+| + ..++. ...++.|.-.|+.+++.+.............+
T Consensus 331 ~~~~~~~~--------~------~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~ 396 (488)
T cd00216 331 EQPMAYDP--------G------LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFP 396 (488)
T ss_pred ccccccCC--------c------eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCc
Confidence 01122222 1 11111 12467888999999998887765311000000
Q ss_pred cCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 446 STGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 446 ~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
...+........+.+++.++.+..+|..+++.+-.++.
T Consensus 397 ~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 397 HWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred ccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 00111123345667777888888999999888877764
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.46 E-value=0.0083 Score=61.19 Aligned_cols=188 Identities=18% Similarity=0.262 Sum_probs=111.5
Q ss_pred CCCceeEEeCCCCCEEEEe---cCC--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc--EEE
Q 008939 130 STSMTNTNFDGKGTYIIFN---VGD--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD--VYS 202 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~---~~d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~--I~i 202 (548)
...+..-.|++++..+++- ... .++++|++.+....+.... ..-...+|+|++ ..++++...||. |++
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---g~~~~P~fspDG--~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---GNNGAPAFSPDG--SKLAFSSSRDGSPDIYL 266 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---CccCCccCCCCC--CEEEEEECCCCCccEEE
Confidence 3445566888998887763 233 6999999987755554433 344556799993 234455556665 667
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
+|+.... ..++.. ..+.-+.=.|+|+|+.++++.+..|.-.||-.+.++.....+
T Consensus 267 ~dl~~~~---~~~Lt~----------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri------------ 321 (425)
T COG0823 267 MDLDGKN---LPRLTN----------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL------------ 321 (425)
T ss_pred EcCCCCc---ceeccc----------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe------------
Confidence 7776521 111111 122223567999999777788888887777766544322111
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-Ce--EEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-GY--LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-g~--v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
....+.-..-.|+|||++|+..+.. |. |.+.|+.++..+..+. .......-.|.+++..+...
T Consensus 322 -------------T~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 322 -------------TFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred -------------eccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence 1111222267799999999887743 44 6666666555333322 22334456788888876654
Q ss_pred eC
Q 008939 360 GE 361 (548)
Q Consensus 360 s~ 361 (548)
+.
T Consensus 388 s~ 389 (425)
T COG0823 388 SG 389 (425)
T ss_pred cc
Confidence 43
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.41 E-value=0.017 Score=59.27 Aligned_cols=143 Identities=16% Similarity=0.169 Sum_probs=79.5
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
......+.++|+++ .+++ +.||...||...... . ...+.-..++|.+
T Consensus 32 ~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~~r----------~---------------------k~~G~g~~~vw~~ 78 (443)
T PF04053_consen 32 EIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALAWR----------N---------------------KAFGSGLSFVWSS 78 (443)
T ss_dssp SS--SEEEE-TTSS-EEEE-EETTEEEEEETTTTE----------E---------------------EEEEE-SEEEE-T
T ss_pred CcCCeeEEECCCCC-EEEE-EcCCEEEEEEccCCc----------c---------------------cccCceeEEEEec
Confidence 44578999999998 5555 667888888832200 0 0014556788988
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGV 389 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v 389 (548)
.+ .+|+-.....|.|+.--+.+....++.. ..+..+-. |.+|+..+.+ .|.+||+++++.+.++... .|..|
T Consensus 79 ~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V 150 (443)
T PF04053_consen 79 RN-RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYV 150 (443)
T ss_dssp SS-EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEE
T ss_pred Cc-cEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEE
Confidence 54 4777777888999633223222223221 12333322 8878777655 8999999999999998733 38999
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 390 AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 390 ~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
.|++ +| .+++-.+. ..+.|++...
T Consensus 151 ~Ws~-------~g------~~val~t~-~~i~il~~~~ 174 (443)
T PF04053_consen 151 IWSD-------DG------ELVALVTK-DSIYILKYNL 174 (443)
T ss_dssp EE-T-------TS------SEEEEE-S--SEEEEEE-H
T ss_pred EEEC-------CC------CEEEEEeC-CeEEEEEecc
Confidence 9999 88 46666654 4677777554
No 351
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0008 Score=68.51 Aligned_cols=94 Identities=19% Similarity=0.244 Sum_probs=73.6
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeE-EEEEC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSIN-SIAFS 308 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s 308 (548)
...+.-+.|+|.-+ ++|.+..+|.|.+..++.. .+..+..|...++ +++|.
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~q---------------------------Rlwtip~p~~~v~~sL~W~ 71 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNWQ---------------------------RLWTIPIPGENVTASLCWR 71 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEeccc---------------------------eeEeccCCCCccceeeeec
Confidence 45678899999999 9999999999998887731 1222233345566 99999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEee-eecCCceEEEEEcc
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGG-KSYYGALLCCAWSM 351 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~l~~sp 351 (548)
|||+.||+|..||+|++.|.+++..+... ......|.++-|.+
T Consensus 72 ~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 72 PDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 99999999999999999999998877652 23456788888874
No 352
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.38 E-value=0.0074 Score=65.29 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=84.9
Q ss_pred CCCeeEeeecCCC-eEEEEECC-----CCCEEEEEECCCeEEEEeCCCC--eEEEe-ee--ecCCceEEEEEccCCCEEE
Q 008939 289 SNPIARWHICQGS-INSIAFST-----DGTYLATVGRDGYLRVFDYSKE--QLICG-GK--SYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 289 ~~~~~~~~~h~~~-v~~~~~sp-----~g~~l~s~~~dg~v~vwd~~~~--~~~~~-~~--~~~~~v~~l~~spdg~~l~ 357 (548)
.+.|..|+.|... |..++=.. +...-+.|-.+..|..||.+-. +++.. .+ .......|++-+.+| +||
T Consensus 514 GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~ia 592 (794)
T PF08553_consen 514 GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIA 592 (794)
T ss_pred CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEE
Confidence 4567888888644 55543211 1234566778889999999853 23321 11 233468899988888 699
Q ss_pred EEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+|+.+|.||+||--..+....|.+-..+|.+|..+. || ++|+..+ +..|.|+|..
T Consensus 593 vgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~-------DG------kwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 593 VGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTA-------DG------KWILATC-KTYLLLIDTL 647 (794)
T ss_pred EEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecC-------CC------cEEEEee-cceEEEEEEe
Confidence 999999999999543344445667789999999999 99 5665544 5678888753
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.35 E-value=0.23 Score=50.81 Aligned_cols=184 Identities=14% Similarity=0.150 Sum_probs=93.9
Q ss_pred cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccce
Q 008939 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
.|.+|+... +.+ ....++ .+.+.++.|..+.. |++-..||.+++||+.-. . .+...
T Consensus 62 ~I~iys~sG------~ll-~~i~w~------~~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~G~--~--~fsl~----- 117 (410)
T PF04841_consen 62 SIQIYSSSG------KLL-SSIPWD------SGRIVGMGWTDDEE--LVVVQSDGTVRVYDLFGE--F--QFSLG----- 117 (410)
T ss_pred EEEEECCCC------CEe-EEEEEC------CCCEEEEEECCCCe--EEEEEcCCEEEEEeCCCc--e--eechh-----
Confidence 477777654 322 333332 37899999988654 677779999999998631 1 11100
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe-EEEee---ee-------cCCceEEE
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ-LICGG---KS-------YYGALLCC 347 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~-~~~~~---~~-------~~~~v~~l 347 (548)
..+......+..+....+..+|-.++ ..++.+.+.+-.... ....+ .. +.....-.
T Consensus 118 -----------~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~ 184 (410)
T PF04841_consen 118 -----------EEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIP 184 (410)
T ss_pred -----------hhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccce
Confidence 01111111122233334444553333 234444333222211 11111 00 00000002
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 348 ~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
.++.+....+....++.+.+.+-...+. +. ..+++..|+.+| +| +.++.-..+|.+.+....-
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-------ng------~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-------NG------KFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-------CC------CEEEEEECCCCEEEEECcc
Confidence 2444444444444555555444332211 22 346899999999 88 6888888889999988766
Q ss_pred CeEEeeeec
Q 008939 428 DEIVVPLRR 436 (548)
Q Consensus 428 ~~~~~~~~~ 436 (548)
.+....+..
T Consensus 248 ~~~~~e~~~ 256 (410)
T PF04841_consen 248 SEKLCEFDT 256 (410)
T ss_pred cceeEEeec
Confidence 666655544
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.23 Score=50.36 Aligned_cols=245 Identities=16% Similarity=0.134 Sum_probs=148.4
Q ss_pred CceeEEeCCCCCEEEEec--CCeEEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEE-EEEcCCcEEEEEeee
Q 008939 132 SMTNTNFDGKGTYIIFNV--GDAIFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLL-IGLNSGDVYSVSLRQ 207 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~--~d~v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~-~g~~dg~I~iwdl~~ 207 (548)
.+..+.+.+++..+.+.. .+.+.+.+.. ...+......+ ..+..++.++. +..++ ....++.|.+.|...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~---~n~~~~~~~~g~~~p~~i~v~~~---~~~vyv~~~~~~~v~vid~~~ 105 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT---SNTVTQSLSVGGVYPAGVAVNPA---GNKVYVTTGDSNTVSVIDTAT 105 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc---cceeeeeccCCCccccceeeCCC---CCeEEEecCCCCeEEEEcCcc
Confidence 344577778885555433 2234444433 12222222222 56778888888 55444 444458899999654
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC---CCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA---DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
.+...... -......+++.|+++ .+.++.. ++.+.+.|..+...
T Consensus 106 ------~~~~~~~~-------vG~~P~~~~~~~~~~-~vYV~n~~~~~~~vsvid~~t~~~------------------- 152 (381)
T COG3391 106 ------NTVLGSIP-------VGLGPVGLAVDPDGK-YVYVANAGNGNNTVSVIDAATNKV------------------- 152 (381)
T ss_pred ------cceeeEee-------eccCCceEEECCCCC-EEEEEecccCCceEEEEeCCCCeE-------------------
Confidence 22222111 122567899999998 4444444 67788877765221
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCeEEE-e---eeecCCceEEEEEccCCCEEEEE
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSKEQLIC-G---GKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~~~~~~-~---~~~~~~~v~~l~~spdg~~l~sg 359 (548)
+.....-..+ ..++++|+|+.++... .++.|.+.|........ . ...-...-..+.++|+|+++.+.
T Consensus 153 -------~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 153 -------TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred -------EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence 1111111123 7899999999766665 78899999987666553 1 01112234568899999976665
Q ss_pred eCC---CeEEEEECCCceeEEeccCCCC-CeEEEEEecCCCCCCCCCCccceeEEEEEE-eCCCeEEEEECCCCeEEeee
Q 008939 360 GED---DLVQVWSMEDRKVVAWGEGHNS-WVSGVAFDSYWSQPNSDGTAETVMYRFGSV-GQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 360 s~d---g~I~vwd~~~~~~~~~~~~h~~-~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~-~~Dg~i~lwd~~~~~~~~~~ 434 (548)
... +.+...|..++........-.. ....+.++| +| ..+... ...+.+.+-|..+.......
T Consensus 225 ~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p-------~g------~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 225 NDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP-------AG------KAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred eccCCCceEEEEeCCCceEEEeccccccCCCCceeECC-------CC------CEEEEEecCCCeEEEEeCCCCceeeee
Confidence 443 5999999998877665221122 566788999 88 344433 45688999999988877665
Q ss_pred ec
Q 008939 435 RR 436 (548)
Q Consensus 435 ~~ 436 (548)
..
T Consensus 292 ~~ 293 (381)
T COG3391 292 PT 293 (381)
T ss_pred cc
Confidence 44
No 355
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.33 E-value=0.031 Score=55.13 Aligned_cols=270 Identities=13% Similarity=0.019 Sum_probs=117.8
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC
Q 008939 232 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 311 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g 311 (548)
-.+.=+|.++|..+|..+..||.-.+|-++.......++.. +.........++|+.
T Consensus 37 YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd------------------------g~g~~~~g~~~s~~~ 92 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD------------------------GPGDNTFGGFLSPDD 92 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------------------------SS-B-TTT-EE-TTS
T ss_pred eecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc------------------------CCCCCccceEEecCC
Confidence 33444678899867777777776555544432211111111 000112235567888
Q ss_pred CEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEc--cCCCEEEEEe---CC-------------------CeEEE
Q 008939 312 TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWS--MDGKYILTGG---ED-------------------DLVQV 367 (548)
Q Consensus 312 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~s--pdg~~l~sgs---~d-------------------g~I~v 367 (548)
+.++.......|+-.|+++.+....+......+-...|. .|+..++-.- .| ..|..
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 888777777899999999988766666556655555664 3555543221 11 12555
Q ss_pred EECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC---CC-eEEEEECCCC-eEEeeeecCCC---
Q 008939 368 WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ---DT-RLLLWDLEMD-EIVVPLRRGPL--- 439 (548)
Q Consensus 368 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~---Dg-~i~lwd~~~~-~~~~~~~~~~~--- 439 (548)
.|+.+++....+. -..++..+.|+|. |. .+|+-|-+ |. .-+||-+++. .....+....+
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~------dp------~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~ 239 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPT------DP------TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGES 239 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETT------EE------EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEE
T ss_pred EECCCCceeEEEe-cCccccCcccCCC------CC------CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcc
Confidence 6788877655555 6778999999992 33 45555543 22 1366765543 22333322221
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEE-CC-------------
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVC-RE------------- 504 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s-~D------------- 504 (548)
.+.-.|.+++....++.. .-+..+..+.-.+..+.+...... ......+--++|+ |++|- .|
T Consensus 240 ~gHEfw~~DG~~i~y~~~-~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~ 316 (386)
T PF14583_consen 240 VGHEFWVPDGSTIWYDSY-TPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI 316 (386)
T ss_dssp EEEEEE-TTSS-EEEEEE-ETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE---------------
T ss_pred cccccccCCCCEEEEEee-cCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence 222345666643333211 112222233334444443322111 1222333344564 55442 22
Q ss_pred ---CeEEEEeCCCCCcc-cc-------------CCCCcEEEecCCCCceEeeec
Q 008939 505 ---GHIKIWMRPGVAES-QS-------------SSSETVLSTSSKDKPLLSSKV 541 (548)
Q Consensus 505 ---g~I~iW~~~~~~~~-~~-------------~~~~~v~~~s~d~~~l~s~~~ 541 (548)
--|.++++..+... .. ...++-..||||+++|+-...
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred cCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 14666777654421 11 112344599999999776543
No 356
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.32 E-value=0.03 Score=54.18 Aligned_cols=216 Identities=16% Similarity=0.246 Sum_probs=124.6
Q ss_pred eEEeCCCCCEEEEecC---CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 135 NTNFDGKGTYIIFNVG---DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~---d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
.++++.||+++.+..- ..|.|-|++.. +.+..+.. +-|.-.-|.+. ..+..-+.||.+....+...-+.
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~--kvv~ei~~----PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAK--KVVGEIDT----PGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTT--EEEEEEEG----TSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCC--ceeeeecC----CCEEEEEecCC--CceEEEecCCceEEEEECCCCCE
Confidence 4688889998887332 38999999973 36766663 23444455532 35888899999999988853222
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC-CCcccccccceeeeecCCCCCCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD-SSFPVIKDQTQFSVAHPRYSKSN 290 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 290 (548)
. .+. ...|..+ ....+..-++...+. .++--+.+|.|+--|+..+.... ..+....+. .
T Consensus 171 ~-~~~--t~~F~~~---~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~-------------e 230 (342)
T PF06433_consen 171 A-QKS--TKVFDPD---DDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDA-------------E 230 (342)
T ss_dssp E-EEE--EEESSTT---TS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HH-------------H
T ss_pred e-Eee--ccccCCC---CcccccccceECCCC-eEEEEecCCEEEEEeccCCcccccCcccccCcc-------------c
Confidence 1 111 1122221 111222334555555 55557888999998887532100 000000000 0
Q ss_pred CeeEeeecCCCeEEEEECCCCCEEEEEEC---C-------CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEE
Q 008939 291 PIARWHICQGSINSIAFSTDGTYLATVGR---D-------GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTG 359 (548)
Q Consensus 291 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~---d-------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sg 359 (548)
.-..|+. +...-+++++..+.|++.-. + ..|.++|+.+++.+..+.. ..++.+|..+.|.+ +|++.
T Consensus 231 ~~~~WrP--GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 231 KADGWRP--GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYAL 307 (342)
T ss_dssp HHTTEEE---SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEE
T ss_pred cccCcCC--cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEE
Confidence 0012222 44555778775554444211 1 2688999999999988763 24688999999877 55444
Q ss_pred -eCCCeEEEEECCCceeEEeccC
Q 008939 360 -GEDDLVQVWSMEDRKVVAWGEG 381 (548)
Q Consensus 360 -s~dg~I~vwd~~~~~~~~~~~~ 381 (548)
..++.|.+||..+++.+..+..
T Consensus 308 ~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 308 SAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEETTT--EEEEE--
T ss_pred cCCCCeEEEEeCcCCcEEeehhc
Confidence 4589999999999999988773
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.31 E-value=0.00086 Score=41.80 Aligned_cols=39 Identities=28% Similarity=0.563 Sum_probs=34.3
Q ss_pred CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 008939 331 EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 369 (548)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd 369 (548)
++++..+..|...|.++.|.+++.++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778889999999999999999999999999996
No 358
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.23 E-value=0.18 Score=49.81 Aligned_cols=159 Identities=13% Similarity=0.140 Sum_probs=76.0
Q ss_pred CcceEEEEEecCCCcEEEEEeCC---C-cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHAD---G-NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~d---g-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
...+.-+.|+|..+.+|.-|.+. . .-+||-++.++.....+..... ...+..=
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----------------------~e~~gHE 243 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----------------------GESVGHE 243 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----------------------TEEEEEE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----------------------Ccccccc
Confidence 44567788888888666666642 2 2367777664433222211100 1223344
Q ss_pred EECCCCCEEEEEE-----CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC----------------e
Q 008939 306 AFSTDGTYLATVG-----RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD----------------L 364 (548)
Q Consensus 306 ~~sp~g~~l~s~~-----~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg----------------~ 364 (548)
-|.|||..|..-+ .+..|.-+|+.+++....... .+..-+--++||++++-=+.|. .
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~ 321 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW 321 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence 5889998766543 245677888888765432221 2344455678998776533332 5
Q ss_pred EEEEECCCceeEEec---------cCCCC-CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 365 VQVWSMEDRKVVAWG---------EGHNS-WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 365 I~vwd~~~~~~~~~~---------~~h~~-~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
|.+++++.++..... .+|.. .=-.+.|+| ||. ..|.+....|...||=+
T Consensus 322 i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSP-------Dgk-----~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 322 IYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSP-------DGK-----WVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEETTTTEEEEEEE-------BTTBSSTT----EE-T-------TSS-----EEEEEE-TTSS-EEEEE
T ss_pred EEEeccccCceeeeeeccCcceeecCCCccCCCCCccCC-------CCC-----EEEEECCCCCCccEEEE
Confidence 677888776543211 11111 113578999 983 56666667777666643
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.23 E-value=0.32 Score=50.00 Aligned_cols=251 Identities=14% Similarity=0.179 Sum_probs=124.6
Q ss_pred eEEeCCCCCEEEEe----cCC--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC----------
Q 008939 135 NTNFDGKGTYIIFN----VGD--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG---------- 198 (548)
Q Consensus 135 ~~~~~~~g~~l~~~----~~d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg---------- 198 (548)
...++|+|++++++ +++ .++|+|++++. .+.. .+.......+.|.++ +..|+....+.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~--~l~d-~i~~~~~~~~~W~~d---~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK--FLPD-GIENPKFSSVSWSDD---GKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE--EEEE-EEEEEESEEEEECTT---SSEEEEEECSTTTSS-CCGCC
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCc--CcCC-cccccccceEEEeCC---CCEEEEEEeCcccccccCCCC
Confidence 57899999999974 333 79999999854 4332 112223334899988 55555554333
Q ss_pred -cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC---cEEEEEcCCCCCCCCCccccc
Q 008939 199 -DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG---NLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 199 -~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~ 274 (548)
.|+.|.+.+...+ ..++ |.... .......+..+++++.+++...... .+++.|+.......
T Consensus 202 ~~v~~~~~gt~~~~--d~lv----fe~~~--~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~------- 266 (414)
T PF02897_consen 202 RQVYRHKLGTPQSE--DELV----FEEPD--EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD------- 266 (414)
T ss_dssp EEEEEEETTS-GGG---EEE----EC-TT--CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-------
T ss_pred cEEEEEECCCChHh--CeeE----EeecC--CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCc-------
Confidence 2788887763211 1121 11111 1112668889999994444444333 46777776521000
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE---CCCeEEEEeCCCCeE---EEeeeecCCceEEEE
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG---RDGYLRVFDYSKEQL---ICGGKSYYGALLCCA 348 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~---~dg~v~vwd~~~~~~---~~~~~~~~~~v~~l~ 348 (548)
.....+......+....-+.++.+++... .++.|...++..... ...+..+...+.-..
T Consensus 267 ---------------~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~ 331 (414)
T PF02897_consen 267 ---------------AKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLED 331 (414)
T ss_dssp ----------------SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEE
T ss_pred ---------------CCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEE
Confidence 11222222223333322222333444332 235677777776542 224444555333333
Q ss_pred EccCCCEEEE-EeCCC--eEEEEECC-CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe--CCCeEEE
Q 008939 349 WSMDGKYILT-GGEDD--LVQVWSME-DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG--QDTRLLL 422 (548)
Q Consensus 349 ~spdg~~l~s-gs~dg--~I~vwd~~-~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~--~Dg~i~l 422 (548)
+...+.+|+. --.++ .|+++|+. ..........-.+.|..+...+ ++. . .++...+ .-..+..
T Consensus 332 ~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~-------~~~--~--~~~~~ss~~~P~~~y~ 400 (414)
T PF02897_consen 332 VSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDF-------DSD--E--LRFSYSSFTTPPTVYR 400 (414)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-T-------T-S--E--EEEEEEETTEEEEEEE
T ss_pred EEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCC-------CCC--E--EEEEEeCCCCCCEEEE
Confidence 4444555554 43443 68889998 4433322222334456665544 331 1 2233333 2468899
Q ss_pred EECCCCeEEe
Q 008939 423 WDLEMDEIVV 432 (548)
Q Consensus 423 wd~~~~~~~~ 432 (548)
||+.+++...
T Consensus 401 ~d~~t~~~~~ 410 (414)
T PF02897_consen 401 YDLATGELTL 410 (414)
T ss_dssp EETTTTCEEE
T ss_pred EECCCCCEEE
Confidence 9999987653
No 360
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.21 E-value=0.48 Score=51.60 Aligned_cols=357 Identities=12% Similarity=0.126 Sum_probs=170.7
Q ss_pred eEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCc---eEEEEEcCCcEEEEEeeeccc
Q 008939 135 NTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGH---DLLIGLNSGDVYSVSLRQQLQ 210 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~---~l~~g~~dg~I~iwdl~~~~~ 210 (548)
....+.+...++.++++ .+...++..+....+.... ....+.|+.++|.+.+.+ .+++|..+..+.+.-....
T Consensus 492 i~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~-~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd-- 568 (1096)
T KOG1897|consen 492 IGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKE-FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD-- 568 (1096)
T ss_pred EEEEeecceEEEEecCccEEEEEEeeccceeeeeehe-ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC--
Confidence 33333444456666665 5555555543322333333 235899999999865544 8999999988766543321
Q ss_pred ccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCC
Q 008939 211 DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSN 290 (548)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (548)
-.+. .+..-....-+..|--..|--+.. +|+++..||.+.-|-++..........
T Consensus 569 ---~~~~--~~~~l~~~~iPRSIl~~~~e~d~~-yLlvalgdG~l~~fv~d~~tg~lsd~K------------------- 623 (1096)
T KOG1897|consen 569 ---LILI--THEQLSGEIIPRSILLTTFEGDIH-YLLVALGDGALLYFVLDINTGQLSDRK------------------- 623 (1096)
T ss_pred ---ccee--eeeccCCCccchheeeEEeeccce-EEEEEcCCceEEEEEEEcccceEcccc-------------------
Confidence 1111 111112222344455555555555 999999999998887765322111110
Q ss_pred CeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC--CCEEEEEeCCCeEEEE
Q 008939 291 PIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD--GKYILTGGEDDLVQVW 368 (548)
Q Consensus 291 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd--g~~l~sgs~dg~I~vw 368 (548)
.......++.--.|+..++.-+.+..|+-.-+|..+ ++++..--....--.-+.|+.+ ...|+.+. .+.+++.
T Consensus 624 ---k~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~ 698 (1096)
T KOG1897|consen 624 ---KVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIG 698 (1096)
T ss_pred ---ccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEE
Confidence 001112344445555544333333445555555443 3333221111110111222222 12455553 4566666
Q ss_pred ECCCcee--EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-----------CC---CeEEEEECCCCeEEe
Q 008939 369 SMEDRKV--VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-----------QD---TRLLLWDLEMDEIVV 432 (548)
Q Consensus 369 d~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-----------~D---g~i~lwd~~~~~~~~ 432 (548)
-++.-+. +.++. -......+++.+ .. ..+...+ .. ..++++|-.+-+.+.
T Consensus 699 tid~iqkl~irtvp-l~~~prrI~~q~-------~s------l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~ 764 (1096)
T KOG1897|consen 699 TIDEIQKLHIRTVP-LGESPRRICYQE-------SS------LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLS 764 (1096)
T ss_pred Eecchhhcceeeec-CCCChhheEecc-------cc------eEEEEEecccccchhhcCCcceEEEEEEecCCceeEEe
Confidence 6554221 22222 223344555554 11 1122111 11 357888888877766
Q ss_pred eeecCCCCCCce-----ecCCCCccccCCeeeeccc----------CCCCceeecCCCCceEEeecC--CCCeeEEEEeC
Q 008939 433 PLRRGPLGGSPT-----FSTGSQSAHWDNVCPVGTL----------QPAPSMRDVPKLSPLVAHRVH--TEPLSGLIFTQ 495 (548)
Q Consensus 433 ~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~g~~----------~~~~~~~d~~~~~~~~~~~~h--~~~V~~l~fsp 495 (548)
..+....-.... |..+. +..+.+|+. .+.+.++.+.....+.....+ .+.+.++.--
T Consensus 765 ~hef~~~E~~~Si~s~~~~~d~-----~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f- 838 (1096)
T KOG1897|consen 765 SHEFERNETALSIISCKFTDDP-----NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF- 838 (1096)
T ss_pred eccccccceeeeeeeeeecCCC-----ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-
Confidence 655432222221 32221 222333322 233444444432222222111 2233333222
Q ss_pred CeEEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeecccc
Q 008939 496 ESVLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 496 d~l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~ 544 (548)
++.+.++-...||++++..+++ ....+...++ .+.-.++.|+.|+.-++
T Consensus 839 ngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S 891 (1096)
T KOG1897|consen 839 NGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS 891 (1096)
T ss_pred CCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce
Confidence 2455566678999999877642 2334444554 55688888999877644
No 361
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.21 E-value=0.091 Score=51.13 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=81.5
Q ss_pred CCeEEEEECCCCCEEEEEEC-----------CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC-CCeEEE
Q 008939 300 GSINSIAFSTDGTYLATVGR-----------DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE-DDLVQV 367 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~-----------dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~-dg~I~v 367 (548)
...+.+...|+|.+.++.-. -|.|..+|. .+..+..+..+-..-+.|+||||++.|...-. .+.|+-
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 34556777888876554333 133444443 45555555554555678999999987776654 478888
Q ss_pred EECCC--c----e-eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC-eEEEEECCCCeEEeeeecC-C
Q 008939 368 WSMED--R----K-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT-RLLLWDLEMDEIVVPLRRG-P 438 (548)
Q Consensus 368 wd~~~--~----~-~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg-~i~lwd~~~~~~~~~~~~~-~ 438 (548)
|++.. + + ....+..+.+..-.++.+. +| ++.+++..+| .|.+|+.. ++++..++.+ .
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-------dG------~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~ 255 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-------DG------NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK 255 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeC-------CC------CEEEecccCCceEEEECCC-CcEEEEEECCCC
Confidence 88763 1 1 1122222334445566665 66 3443444443 99999998 9999888876 5
Q ss_pred CCCCceecC
Q 008939 439 LGGSPTFST 447 (548)
Q Consensus 439 ~~~~~~~~~ 447 (548)
...+++|..
T Consensus 256 ~~t~~~FgG 264 (307)
T COG3386 256 RPTNPAFGG 264 (307)
T ss_pred CCccceEeC
Confidence 566666643
No 362
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.21 E-value=0.001 Score=41.48 Aligned_cols=38 Identities=34% Similarity=0.656 Sum_probs=33.5
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd 327 (548)
+++..+..|...|.++.|.+++.++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566777889999999999889999999999999996
No 363
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.20 E-value=0.029 Score=44.80 Aligned_cols=102 Identities=22% Similarity=0.262 Sum_probs=66.6
Q ss_pred eEEEEEe---cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 233 CTSVTWV---PGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 233 v~~l~~~---p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
|++|++. .++.+.|++|+.|..|++|+-+. .+..... ...|.+++-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----------------------------~~~Ei~e-~~~v~~L~~~~ 52 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----------------------------IVAEITE-TDKVTSLCSLG 52 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----------------------------EEEEEec-ccceEEEEEcC
Confidence 4555554 45567999999999999998653 1111221 25677777665
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc---CC-CEEEEEeCCCeEEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM---DG-KYILTGGEDDLVQV 367 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp---dg-~~l~sgs~dg~I~v 367 (548)
. ..++.+..+|+|-+|+-. +.+...+... .+.++++.. || .-|++|-.+|.|-+
T Consensus 53 ~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 53 G-GRFAYALANGTVGVYDRS--QRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred C-CEEEEEecCCEEEEEeCc--ceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 5 579999999999999763 3344444333 355665443 33 25888988888753
No 364
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.08 E-value=0.31 Score=46.95 Aligned_cols=243 Identities=15% Similarity=0.118 Sum_probs=125.5
Q ss_pred CCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccc-eee
Q 008939 140 GKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK-LVG 218 (548)
Q Consensus 140 ~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~-~~~ 218 (548)
..++.++.+..+.++++++.... .+...... ..+..+..-|+ -+ ++..-.|+.|+++++.......... ...
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~-~~~~i~~~--~~I~ql~vl~~---~~-~llvLsd~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPS-KPTRILKL--SSITQLSVLPE---LN-LLLVLSDGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCc-cceeEeec--ceEEEEEEecc---cC-EEEEEcCCccEEEEchhhccccccccccc
Confidence 45678888888889999993221 23333222 23777777776 22 3444456999999998632222111 000
Q ss_pred eee-eccCCcccCcceEEEE--EecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEe
Q 008939 219 AHH-YNKDGSVNNSRCTSVT--WVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARW 295 (548)
Q Consensus 219 ~~~-~~~~~~~~~~~v~~l~--~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (548)
... ...........+...+ =...+...|+++ ...+|.+|.......... ...+.+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~---------------------~~~ke~ 135 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFS---------------------KLLKEI 135 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCccccc---------------------ceeEEE
Confidence 000 0000001122334333 112333244444 445899988865211110 112222
Q ss_pred eecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeec------------CCceEEEEEccCCCEEEEEeCCC
Q 008939 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY------------YGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 296 ~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~------------~~~v~~l~~spdg~~l~sgs~dg 363 (548)
... ..+..++|. ++.|+.+..+ ...+.|+.++.....+... ..++..+.. +++++|++- |.
T Consensus 136 ~lp-~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~ 208 (275)
T PF00780_consen 136 SLP-DPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DN 208 (275)
T ss_pred EcC-CCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cc
Confidence 222 678889998 4577777655 4788899876543322111 122333333 345666543 33
Q ss_pred eEEEEECCCceeEE--eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 364 LVQVWSMEDRKVVA--WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 364 ~I~vwd~~~~~~~~--~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.-.+.|.. |+... .++- ......+++.. .+|+.... +.|.||++.++++++.+..
T Consensus 209 ~g~fv~~~-G~~~r~~~i~W-~~~p~~~~~~~---------------pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 209 IGVFVNKN-GEPSRKSTIQW-SSAPQSVAYSS---------------PYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred eEEEEcCC-CCcCcccEEEc-CCchhEEEEEC---------------CEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 44444443 33222 2221 22445566543 24544444 5699999999999998875
No 365
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.08 E-value=0.24 Score=45.59 Aligned_cols=119 Identities=13% Similarity=0.032 Sum_probs=81.9
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEE
Q 008939 237 TWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLAT 316 (548)
Q Consensus 237 ~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s 316 (548)
...++.+.+++.|+..+.+..-|..++ ...+.. .....|.+-+.- -|.+++.
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG-~~~We~--------------------------ilg~RiE~sa~v-vgdfVV~ 68 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSG-NLIWEA--------------------------ILGVRIECSAIV-VGDFVVL 68 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCC-cEEeeh--------------------------hhCceeeeeeEE-ECCEEEE
Confidence 344555657888888888888887652 211100 011223332222 4677999
Q ss_pred EECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCC
Q 008939 317 VGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN 383 (548)
Q Consensus 317 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~ 383 (548)
|...|.+.+.+.++|+....+.....-=......+++.++..|+.|+..+..|.++..++...+...
T Consensus 69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 69 GCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred EEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence 9999999999999998877766443322234567889999999999999999999999988876433
No 366
>PHA02713 hypothetical protein; Provisional
Probab=97.06 E-value=0.027 Score=60.10 Aligned_cols=92 Identities=8% Similarity=-0.056 Sum_probs=53.5
Q ss_pred eEEEEeCCCCeEE--EeeeecCCceEEEEEccCCCEEEEEeCC------CeEEEEECCC-c--eeEEeccCCCCCeEEEE
Q 008939 322 YLRVFDYSKEQLI--CGGKSYYGALLCCAWSMDGKYILTGGED------DLVQVWSMED-R--KVVAWGEGHNSWVSGVA 390 (548)
Q Consensus 322 ~v~vwd~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~sgs~d------g~I~vwd~~~-~--~~~~~~~~h~~~V~~v~ 390 (548)
.+..||.++.+-. ..+.. ......+..-++++.+.|+.+ ..+..||.++ . ..+..+.........+.
T Consensus 433 ~ve~YDP~td~W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred eEEEECCCCCeEeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 4778888766432 22211 111112223357777777754 2467899886 3 34445544444445555
Q ss_pred EecCCCCCCCCCCccceeEEEEEEeCCC--eEEEEECCCCeE
Q 008939 391 FDSYWSQPNSDGTAETVMYRFGSVGQDT--RLLLWDLEMDEI 430 (548)
Q Consensus 391 ~~p~~~~~~~dg~~~~~~~~l~s~~~Dg--~i~lwd~~~~~~ 430 (548)
+ +| ++.+.||.|+ .+-.||..+++-
T Consensus 511 ~---------~~------~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 511 H---------DN------TIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred E---------CC------EEEEEeeecceeehhhcCcccccc
Confidence 5 56 7889999888 666777766553
No 367
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.04 E-value=0.094 Score=41.93 Aligned_cols=104 Identities=15% Similarity=0.119 Sum_probs=68.8
Q ss_pred eEEEEECC---CC-CEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 302 INSIAFST---DG-TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 302 v~~~~~sp---~g-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
|++|++.. || +.|++|+.|..||+|+-. +.+..+.. .+.|.++.-... ..++.+-.+|+|-+|+-... +-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce--ee
Confidence 45555543 43 589999999999999754 56666664 466888877766 56888999999999986432 33
Q ss_pred eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 378 WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 378 ~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
+.+. ...+.++++.. .+.|| ...|++|-.+|.|-
T Consensus 76 RiKS-K~~~~~~~~~D----~~gdG-----~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYD----INGDG-----VPELIVGWSNGKVE 109 (111)
T ss_pred eecc-CCCeEEEEEEc----CCCCC-----ceEEEEEecCCeEE
Confidence 3332 23355555532 11133 15688888888774
No 368
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.01 E-value=0.0012 Score=59.12 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=85.0
Q ss_pred eEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 008939 190 DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS 269 (548)
Q Consensus 190 ~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 269 (548)
.|..-+.+|.|.-++++... ..... ...+.+.--.+....-+++|..+|.|++|.....+.....
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k-----~s~rs----------e~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~ 96 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHK-----ESCRS----------ERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDR 96 (238)
T ss_pred hhccccCCcccccchhhhhh-----hhhhh----------hhhhhcceeecccCceEEeecccceEEEecCCccchHHHh
Confidence 46667788888888877621 11111 1111122111222227999999999999998854433222
Q ss_pred cccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE-ECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecC-CceEEE
Q 008939 270 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA-FSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-GALLCC 347 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l 347 (548)
+.... ..|.++- --.++.+.+++..||.||.|++.-.+.+.....|. .++..+
T Consensus 97 ~~s~~-------------------------e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 97 VCSGE-------------------------ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred hhccc-------------------------ccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 22111 2232221 12255688999999999999999888877766666 445455
Q ss_pred EEccCCCEEEEE--eCCCeEEEEECCC
Q 008939 348 AWSMDGKYILTG--GEDDLVQVWSMED 372 (548)
Q Consensus 348 ~~spdg~~l~sg--s~dg~I~vwd~~~ 372 (548)
..+..+++|+.. +.|..++.|+++.
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 555555566665 6666666666653
No 369
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.3 Score=45.63 Aligned_cols=159 Identities=15% Similarity=0.190 Sum_probs=94.4
Q ss_pred EEecCCCcEEEEEeCC-----CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC
Q 008939 237 TWVPGGDGAFVVGHAD-----GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 311 (548)
Q Consensus 237 ~~~p~~~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g 311 (548)
.|+|+|. +|+..-.| |.|-|||.+.. ...+..|..|.-....+.|.+||
T Consensus 120 vfs~dG~-~LYATEndfd~~rGViGvYd~r~~-------------------------fqrvgE~~t~GiGpHev~lm~DG 173 (366)
T COG3490 120 VFSPDGR-LLYATENDFDPNRGVIGVYDAREG-------------------------FQRVGEFSTHGIGPHEVTLMADG 173 (366)
T ss_pred ccCCCCc-EEEeecCCCCCCCceEEEEecccc-------------------------cceecccccCCcCcceeEEecCC
Confidence 5899999 66665443 78999998742 23355566666777889999999
Q ss_pred CEEEEEEC------C------------CeEEEEeCCCCeEEEe--ee--ecCCceEEEEEccCCCEEEEEeCCC-----e
Q 008939 312 TYLATVGR------D------------GYLRVFDYSKEQLICG--GK--SYYGALLCCAWSMDGKYILTGGEDD-----L 364 (548)
Q Consensus 312 ~~l~s~~~------d------------g~v~vwd~~~~~~~~~--~~--~~~~~v~~l~~spdg~~l~sgs~dg-----~ 364 (548)
+.|+.+.. | -.+.+.|..+++++.+ +. -+.-.|..++..+||..++-+-..| -
T Consensus 174 rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~p 253 (366)
T COG3490 174 RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLP 253 (366)
T ss_pred cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCC
Confidence 99887642 1 1233334344444322 11 2334577788888887555442211 1
Q ss_pred EEEEECCCceeEEeccC-------CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 365 VQVWSMEDRKVVAWGEG-------HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~-------h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
..|=....++.+..+.. -...|-+|+.+.. ++ ...+|.=..+...+||..++..+..
T Consensus 254 pLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~------~g------lV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 254 PLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRR------DG------LVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred cceeeccCCCcCcccCCCHHHHHHHHhhhhheeeccc------CC------eEEEecCCCCeEEEEEcCCCcEEec
Confidence 12222233444443331 2346667777641 45 4455555677889999999987754
No 370
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.95 E-value=0.0016 Score=68.35 Aligned_cols=108 Identities=15% Similarity=0.224 Sum_probs=86.3
Q ss_pred EEEECCCCCEEEEEE----CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec
Q 008939 304 SIAFSTDGTYLATVG----RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 304 ~~~~sp~g~~l~s~~----~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~ 379 (548)
-..|+|...++++++ ..|.|.|| .++|++..... ..-.+.+++|+|..-.|+.|-+-|.+.+|...+.+.-...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~ 97 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV 97 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence 356889888888776 45788888 45566433221 2233667999999888999999999999999887766666
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 380 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 380 ~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
..|..+|..+.|+| +| ..|+++..-|.|.+|.+.
T Consensus 98 ~th~a~i~~l~wS~-------~G------~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSH-------DG------TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCCCCceeEEecC-------CC------CeEEEcCCCceeEEEEee
Confidence 67999999999999 99 799999999999999776
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.88 E-value=0.11 Score=51.32 Aligned_cols=120 Identities=18% Similarity=0.284 Sum_probs=76.8
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
.....++|++++-- +.+++++.++.|++|++.... .+....+.......+..... ++++++|.....|.++..
T Consensus 84 ~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~--~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 84 STEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSK--TLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTS--SEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEE
T ss_pred EEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcc--cchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEE
Confidence 33446677777665 445888888999999999744 35555444433333333333 558999999999998866
Q ss_pred eecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK 262 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~ 262 (548)
+.. .+.+... .++. ....++++.|.++++ .++++..+|++.++....
T Consensus 157 ~~~----~~~l~~v---a~d~--~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 157 DEE----NNKLILV---ARDY--QPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ETT----TE-EEEE---EEES--S-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-S
T ss_pred Ecc----CCEEEEE---EecC--CCccEEEEEEecCCc-EEEEEcCCCeEEEEEECC
Confidence 541 1112111 1111 356789999997776 899999999999999864
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.84 E-value=0.097 Score=55.91 Aligned_cols=88 Identities=15% Similarity=0.043 Sum_probs=52.7
Q ss_pred eEEEEECCCCCEEEEEECC------------CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEE--
Q 008939 302 INSIAFSTDGTYLATVGRD------------GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQV-- 367 (548)
Q Consensus 302 v~~~~~sp~g~~l~s~~~d------------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~v-- 367 (548)
...-.|+|||+.|++.... +.+.+.++..++... ...+.|..+.|||||+.|+.-. ++.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEE
Confidence 6778899998888777532 222222333332221 2345799999999999887765 467777
Q ss_pred -EECCCcee-E---Eec-cCCCCCeEEEEEec
Q 008939 368 -WSMEDRKV-V---AWG-EGHNSWVSGVAFDS 393 (548)
Q Consensus 368 -wd~~~~~~-~---~~~-~~h~~~V~~v~~~p 393 (548)
-....+.. + ..+ .+-...+..+.|..
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~ 506 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRT 506 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEec
Confidence 44344431 1 112 12334467888987
No 373
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.064 Score=54.05 Aligned_cols=122 Identities=19% Similarity=0.208 Sum_probs=85.3
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCE-------EEEEECCCeEEEEeCCCCeE--EEeeeec----CCceEEEEEccCCCE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTY-------LATVGRDGYLRVFDYSKEQL--ICGGKSY----YGALLCCAWSMDGKY 355 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~-------l~s~~~dg~v~vwd~~~~~~--~~~~~~~----~~~v~~l~~spdg~~ 355 (548)
.+.+..|+.|.. |+-+.+.|+.+. =+.|-.|..|.-||.+-... +...++| .....|.+-..+| +
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~ 443 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-Y 443 (644)
T ss_pred ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-e
Confidence 356778888866 777778886431 23466788899999974322 2222222 2356788877777 7
Q ss_pred EEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 356 l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+++|+.+|.|++||--..+...-+.+...+|..|..+. || .+|+.. .+..|.|-|+.
T Consensus 444 IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvta-------dG------Kwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 444 IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTA-------DG------KWILAT-CKTYLLLIDTL 500 (644)
T ss_pred EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeec-------cC------cEEEEe-cccEEEEEEEe
Confidence 99999999999999844444556778899999999998 99 555544 45677777754
No 374
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.77 E-value=0.97 Score=47.92 Aligned_cols=27 Identities=7% Similarity=-0.058 Sum_probs=23.6
Q ss_pred EEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 410 RFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 410 ~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
+++.+..||.++.+|.++|+.+...+.
T Consensus 474 lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 474 LVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred EEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 566678899999999999999988876
No 375
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.66 E-value=1.2 Score=47.33 Aligned_cols=178 Identities=10% Similarity=0.122 Sum_probs=92.1
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe------CCCcEEEEEcC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH------ADGNLYVYEKS 261 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~------~dg~v~vwd~~ 261 (548)
+..+++++.++.|+-+|.++ ++.+......... ....+++--..-++ .++++. .+|.|+.+|.+
T Consensus 120 ~~~v~v~t~dg~l~ALDa~T-----Gk~~W~~~~~~~~---~~~~~tssP~v~~g--~Vivg~~~~~~~~~G~v~AlD~~ 189 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKT-----GKVVWSKKNGDYK---AGYTITAAPLVVKG--KVITGISGGEFGVRGYVTAYDAK 189 (527)
T ss_pred CCEEEEEcCCCEEEEEECCC-----CCEEeeccccccc---ccccccCCcEEECC--EEEEeecccccCCCcEEEEEECC
Confidence 34688889999999999876 4444322110000 00011110001133 345543 26889999998
Q ss_pred CCCCCCCCcccccccceeeeecCC-CCCCCCeeE-----eeecCCCeE-EEEECCCCCEEEEEECC-----C--------
Q 008939 262 KDGAGDSSFPVIKDQTQFSVAHPR-YSKSNPIAR-----WHICQGSIN-SIAFSTDGTYLATVGRD-----G-------- 321 (548)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~h~~~v~-~~~~sp~g~~l~s~~~d-----g-------- 321 (548)
+ ++....+............... .....-... |..-.+.+. .+++.|+..+|+.+... +
T Consensus 190 T-G~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl 268 (527)
T TIGR03075 190 T-GKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNL 268 (527)
T ss_pred C-CceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCc
Confidence 7 5555544433221110000000 000000011 111112222 45677766666655421 2
Q ss_pred ---eEEEEeCCCCeEEEeeeecCCce---------EEEEEccCCC---EEEEEeCCCeEEEEECCCceeE
Q 008939 322 ---YLRVFDYSKEQLICGGKSYYGAL---------LCCAWSMDGK---YILTGGEDDLVQVWSMEDRKVV 376 (548)
Q Consensus 322 ---~v~vwd~~~~~~~~~~~~~~~~v---------~~l~~spdg~---~l~sgs~dg~I~vwd~~~~~~~ 376 (548)
.|.-.|+++|+....++.....+ .-+.+..+|+ .++.+..+|.+.+.|-++++.+
T Consensus 269 ~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 269 YTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 67788999999987776422211 1223334776 7889999999999999999876
No 376
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.048 Score=54.93 Aligned_cols=150 Identities=19% Similarity=0.390 Sum_probs=98.8
Q ss_pred CCCCEEEEecCC--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCC----CceEEEEEcCCcEEEEEeeecccccc
Q 008939 140 GKGTYIIFNVGD--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKD----GHDLLIGLNSGDVYSVSLRQQLQDVG 213 (548)
Q Consensus 140 ~~g~~l~~~~~d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~----~~~l~~g~~dg~I~iwdl~~~~~~~~ 213 (548)
.+...|....+. .|+--|++.+. .|....++.+ |..+.+.|+.+. ...-++|..+..|.-||.+-+ ...
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GK--IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~--~~~ 417 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGK--IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ--GKN 417 (644)
T ss_pred cccceEeeCCCCcCcceeeecccce--eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEeccccc--Ccc
Confidence 344455554443 77777888765 8888888775 888888888651 234578999999999999853 221
Q ss_pred ccee-eeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCe
Q 008939 214 KKLV-GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 292 (548)
Q Consensus 214 ~~~~-~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (548)
+... +...|. -+....|.+=..+| ++++|+.+|.|++||- .+......+|.+.
T Consensus 418 kl~~~q~kqy~-----~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG------------------ 471 (644)
T KOG2395|consen 418 KLAVVQSKQYS-----TKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLG------------------ 471 (644)
T ss_pred eeeeeeccccc-----cccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccC------------------
Confidence 1111 111111 23445565555555 7999999999999997 4344444444433
Q ss_pred eEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeC
Q 008939 293 ARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDY 328 (548)
Q Consensus 293 ~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~ 328 (548)
.+|..+..+.+|++|+..+ +.+|.+.++
T Consensus 472 -------~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 472 -------DAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred -------CceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 6899999999999877554 567776665
No 377
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.65 E-value=0.68 Score=44.50 Aligned_cols=160 Identities=18% Similarity=0.214 Sum_probs=88.0
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
++.|++|+.+| |+++++... ....... ....|..+...|+-+ .|++- .|+.++++++..-....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~-----~~~~~i~--------~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDP-----SKPTRIL--------KLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVS 70 (275)
T ss_pred CCEEEEEECCC-EEEEEecCC-----ccceeEe--------ecceEEEEEEecccC-EEEEE-cCCccEEEEchhhcccc
Confidence 66899999988 999998321 1111111 344599999999887 44443 35999999997632221
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE--ECCCCCEEEEEECCCeEEEEeCCCC-----eEEEeeeec
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA--FSTDGTYLATVGRDGYLRVFDYSKE-----QLICGGKSY 340 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~sp~g~~l~s~~~dg~v~vwd~~~~-----~~~~~~~~~ 340 (548)
...+...... .....--.....+..++ -...+...+.+.....|.+|..... +....+. .
T Consensus 71 ~~~~~~~~~~------------~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-l 137 (275)
T PF00780_consen 71 TSAPLAFPKS------------RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-L 137 (275)
T ss_pred cccccccccc------------ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-c
Confidence 1100000000 00000000012344443 1123333344445568999888653 3344443 3
Q ss_pred CCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec
Q 008939 341 YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 341 ~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~ 379 (548)
...+.+++|. ++.|+.|..+ ...+.|+.++.....+
T Consensus 138 p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 138 PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEe
Confidence 4678899998 4567777654 5788899877654433
No 378
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.58 E-value=1 Score=45.67 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=63.5
Q ss_pred CCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCC--------CCCCccceeEEEE
Q 008939 341 YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPN--------SDGTAETVMYRFG 412 (548)
Q Consensus 341 ~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~--------~dg~~~~~~~~l~ 412 (548)
...+.++..+|++++.|+...=|.|.++|+.++..+..++|..+. .+.|........ .....+....+++
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 345788999999998888777799999999999988888876543 222221100000 0001122334555
Q ss_pred EEeCCCeEEEEECCCCeEEeeeec
Q 008939 413 SVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 413 s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
-+-.-|.|-||+++.+..+..+..
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEe
Confidence 666789999999999998877764
No 379
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.57 E-value=0.91 Score=45.03 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=40.4
Q ss_pred CceEEeecCCCCeeEEEEeCC--------eEEEEE-CCCeEEEEeCCCCC-----cccc-CCCCcEE--EecCCCCceEe
Q 008939 476 SPLVAHRVHTEPLSGLIFTQE--------SVLTVC-REGHIKIWMRPGVA-----ESQS-SSSETVL--STSSKDKPLLS 538 (548)
Q Consensus 476 ~~~~~~~~h~~~V~~l~fspd--------~l~t~s-~Dg~I~iW~~~~~~-----~~~~-~~~~~v~--~~s~d~~~l~s 538 (548)
.|+..+..| ..+..+.|-.. .++.+. ..+.|...++.... +... .....+. ++.|||.+.++
T Consensus 244 ~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~ 322 (331)
T PF07995_consen 244 PPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVS 322 (331)
T ss_dssp --SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEE
T ss_pred ccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEE
Confidence 466666655 55778888742 244444 45677777765332 1111 2222343 77899999888
Q ss_pred eeccccccc
Q 008939 539 SKVVTSSYR 547 (548)
Q Consensus 539 ~~~~g~~~~ 547 (548)
.+..|.+||
T Consensus 323 ~d~~G~iyR 331 (331)
T PF07995_consen 323 DDSDGKIYR 331 (331)
T ss_dssp E-TTTTEEE
T ss_pred ECCCCeEeC
Confidence 887899987
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.48 E-value=0.24 Score=52.96 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=61.3
Q ss_pred CCeEEEEECCCCCEEEEEE------CCC--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC---------
Q 008939 300 GSINSIAFSTDGTYLATVG------RDG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED--------- 362 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~------~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d--------- 362 (548)
..+...+++|+|+.++..- .|. .|.+++.. +.......+ .....-.|+|||+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4577899999999887765 243 45555643 222222222 237788999999877776533
Q ss_pred ---CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEE
Q 008939 363 ---DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLL 422 (548)
Q Consensus 363 ---g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~l 422 (548)
+.+.+.+++.++... .....|..+.|+| || .+|+... +++|.+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-------DG------~RiA~i~-~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSR-------DG------VRAAMII-GGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECC-------CC------CEEEEEE-CCEEEE
Confidence 223333443332222 2356799999999 99 4555443 355544
No 381
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.19 E-value=0.84 Score=45.78 Aligned_cols=245 Identities=11% Similarity=0.108 Sum_probs=104.4
Q ss_pred EEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE--C--
Q 008939 245 AFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG--R-- 319 (548)
Q Consensus 245 ~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~--~-- 319 (548)
+|++.+ .++.|+|+|+.++.........++....+.. .+ . .....+..-|+|+.++++- .
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k-------~g---~-----s~PHT~Hclp~G~imIS~lGd~~G 153 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEK-------TG---L-----SRPHTVHCLPDGRIMISALGDADG 153 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHH-------H----E-----EEEEEEEE-SS--EEEEEEEETTS
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhh-------cC---C-----CCCceeeecCCccEEEEeccCCCC
Confidence 566554 7899999999864432222222211000000 00 0 1112222337888877753 2
Q ss_pred --CCeEEEEeCCCCeEEEeeeecC---CceEEEEEccCCCEEEEEe--------------------CCCeEEEEECCCce
Q 008939 320 --DGYLRVFDYSKEQLICGGKSYY---GALLCCAWSMDGKYILTGG--------------------EDDLVQVWSMEDRK 374 (548)
Q Consensus 320 --dg~v~vwd~~~~~~~~~~~~~~---~~v~~l~~spdg~~l~sgs--------------------~dg~I~vwd~~~~~ 374 (548)
-|-+.++|-++-+.+....... ..-..+-|.|..+.+++.. -...+++||+.+++
T Consensus 154 ~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~ 233 (461)
T PF05694_consen 154 NGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK 233 (461)
T ss_dssp -S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred CCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence 2567888888777666554322 2345667788777777653 23579999999999
Q ss_pred eEEeccCCCC--CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC-CCCeEEeeeecCCCCCCceecCCCCc
Q 008939 375 VVAWGEGHNS--WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL-EMDEIVVPLRRGPLGGSPTFSTGSQS 451 (548)
Q Consensus 375 ~~~~~~~h~~--~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (548)
.++++.--.. ....|.|.. .+ +.. +-++.+....+|..|-- +.++-.....
T Consensus 234 ~~Q~idLg~~g~~pLEvRflH--~P---~~~-----~gFvg~aLss~i~~~~k~~~g~W~a~kV---------------- 287 (461)
T PF05694_consen 234 LLQTIDLGEEGQMPLEVRFLH--DP---DAN-----YGFVGCALSSSIWRFYKDDDGEWAAEKV---------------- 287 (461)
T ss_dssp EEEEEES-TTEEEEEEEEE-S--ST---T-------EEEEEEE--EEEEEEEE-ETTEEEEEEE----------------
T ss_pred EeeEEecCCCCCceEEEEecC--CC---Ccc-----ceEEEEeccceEEEEEEcCCCCeeeeEE----------------
Confidence 9998874332 344666643 11 221 34666666677766654 3333211100
Q ss_pred cccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--e-EEEEECCCeEEEEeCCCCCcccc--------
Q 008939 452 AHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--S-VLTVCREGHIKIWMRPGVAESQS-------- 520 (548)
Q Consensus 452 ~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~-l~t~s~Dg~I~iW~~~~~~~~~~-------- 520 (548)
+.+.. ..+.-|.++.. +..+..-..-|++|..|.| + .+++=.+|.||.||+........
T Consensus 288 ------i~ip~--~~v~~~~lp~m--l~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG 357 (461)
T PF05694_consen 288 ------IDIPA--KKVEGWILPEM--LKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGG 357 (461)
T ss_dssp ------EEE----EE--SS---GG--GGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BT
T ss_pred ------EECCC--cccCccccccc--ccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECc
Confidence 00000 00111222111 0111111245889999986 3 56667999999999876541111
Q ss_pred ---------------CCCCcEEEecCCCCceEeee
Q 008939 521 ---------------SSSETVLSTSSKDKPLLSSK 540 (548)
Q Consensus 521 ---------------~~~~~v~~~s~d~~~l~s~~ 540 (548)
......+.+|-||++|-..+
T Consensus 358 ~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 358 SIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 11124458999999887653
No 382
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.17 E-value=1.6 Score=43.69 Aligned_cols=230 Identities=18% Similarity=0.240 Sum_probs=115.4
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCC------------------CCceEEEecCCCCCCceEE
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSN------------------SNPVCHAFDQDAKDGHDLL 192 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~------------------~~~~~~~~~p~~~~~~~l~ 192 (548)
..+....|+|+|+.+++..+..|+++++.++. ...+.... ..-..+-|+|+ +..|+
T Consensus 43 ~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~---~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd---~~~la 116 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ---ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD---SKYLA 116 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEETTEEEEESSTTSE---EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TT---SSEEE
T ss_pred cccccceeecCCCeeEEEecCceEEEECCCCC---eEEeccccceeEEcCccceeccccccccccceEECCC---CCEEE
Confidence 45567999999999999999999999987642 23333221 23467889999 55565
Q ss_pred EEE-cCCcEEEEEeeecccccc-cceeeeeeeccCCc---------------------------ccCcceEEEEEecCCC
Q 008939 193 IGL-NSGDVYSVSLRQQLQDVG-KKLVGAHHYNKDGS---------------------------VNNSRCTSVTWVPGGD 243 (548)
Q Consensus 193 ~g~-~dg~I~iwdl~~~~~~~~-~~~~~~~~~~~~~~---------------------------~~~~~v~~l~~~p~~~ 243 (548)
... .+..|..+.+........ .+.....++.+.+. ....-+..+.|.+++.
T Consensus 117 ~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~ 196 (353)
T PF00930_consen 117 FLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGK 196 (353)
T ss_dssp EEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTE
T ss_pred EEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCc
Confidence 554 455566665544222111 11122222222111 1234567788888876
Q ss_pred cEEEE--EeCCC---cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC---CeEEEEEC-CCCC-E
Q 008939 244 GAFVV--GHADG---NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG---SINSIAFS-TDGT-Y 313 (548)
Q Consensus 244 ~~l~s--~~~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s-p~g~-~ 313 (548)
.|+. ...+. .+.++|..+ +...... -....+ .-..+.|. +++. +
T Consensus 197 -~l~~~~~nR~q~~~~l~~~d~~t-g~~~~~~------------------------~e~~~~Wv~~~~~~~~~~~~~~~~ 250 (353)
T PF00930_consen 197 -RLWVQWLNRDQNRLDLVLCDAST-GETRVVL------------------------EETSDGWVDVYDPPHFLGPDGNEF 250 (353)
T ss_dssp -EEEEEEEETTSTEEEEEEEEECT-TTCEEEE------------------------EEESSSSSSSSSEEEE-TTTSSEE
T ss_pred -EEEEEEcccCCCEEEEEEEECCC-CceeEEE------------------------EecCCcceeeecccccccCCCCEE
Confidence 2333 33332 344455543 1111111 000111 12244554 5544 5
Q ss_pred EEEEECCCeEEE--EeCCCCeEEEeeeecCCceEE-EEEccCCCEEE-EEeCC----CeEEEEECCCceeEEeccCCCCC
Q 008939 314 LATVGRDGYLRV--FDYSKEQLICGGKSYYGALLC-CAWSMDGKYIL-TGGED----DLVQVWSMEDRKVVAWGEGHNSW 385 (548)
Q Consensus 314 l~s~~~dg~v~v--wd~~~~~~~~~~~~~~~~v~~-l~~spdg~~l~-sgs~d----g~I~vwd~~~~~~~~~~~~h~~~ 385 (548)
|.....||.-+| ++...+... .+....-.|.. +.|+++++.|. ++..+ ..|...+++.+..+..+......
T Consensus 251 l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~ 329 (353)
T PF00930_consen 251 LWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD 329 (353)
T ss_dssp EEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST
T ss_pred EEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC
Confidence 555557776554 455555533 44444455644 67888877544 55542 35666667723344555533333
Q ss_pred eEEEEEec
Q 008939 386 VSGVAFDS 393 (548)
Q Consensus 386 V~~v~~~p 393 (548)
-..+.|+|
T Consensus 330 ~~~~~~Sp 337 (353)
T PF00930_consen 330 HYSASFSP 337 (353)
T ss_dssp TEEEEE-T
T ss_pred ceEEEECC
Confidence 37899999
No 383
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.15 E-value=1 Score=41.03 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=65.1
Q ss_pred CCeEEEEECCCCCEEE-EEECCCeEEEEe--CCCCe-----EEEeeeec---C-CceEEEEEccCCCEEEEEeCCCeEEE
Q 008939 300 GSINSIAFSTDGTYLA-TVGRDGYLRVFD--YSKEQ-----LICGGKSY---Y-GALLCCAWSMDGKYILTGGEDDLVQV 367 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~-s~~~dg~v~vwd--~~~~~-----~~~~~~~~---~-~~v~~l~~spdg~~l~sgs~dg~I~v 367 (548)
+--+.++|+.+.+.+. +-+.+-+|.-|| ..+|. .+..++.. . -.--.++..-+|++.++.-..++|..
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 4456789998776555 445677787788 44553 23333321 1 11122444567888888888999999
Q ss_pred EECCCceeEEeccCCCCCeEEEEEe
Q 008939 368 WSMEDRKVVAWGEGHNSWVSGVAFD 392 (548)
Q Consensus 368 wd~~~~~~~~~~~~h~~~V~~v~~~ 392 (548)
.|..+++.+.++.-....|++++|-
T Consensus 238 ~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ECCCCCcEEEEEEcCCCceEEEEec
Confidence 9999999999999889999999993
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.07 E-value=0.93 Score=42.50 Aligned_cols=107 Identities=16% Similarity=0.168 Sum_probs=71.4
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCc-EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGN-LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
..+...|.|+|....-++.+-.=|+ ..++|.... +........+ -+.+-+| =.||
T Consensus 67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~-~~pv~~~s~~-----------------~RHfyGH------Gvfs 122 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGA-QEPVTLVSQE-----------------GRHFYGH------GVFS 122 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCCceEEEECCCCC-cCcEEEeccc-----------------Cceeecc------cccC
Confidence 4556788899988766666666665 567887752 2222211111 1122222 3699
Q ss_pred CCCCEEEEEECC-----CeEEEEeCCCC-eEEEeeeecCCceEEEEEccCCCEEEEEe
Q 008939 309 TDGTYLATVGRD-----GYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 309 p~g~~l~s~~~d-----g~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
|||.+|+..-.| |.|-|||.+.+ +.+..+..|.-.-..+.|.+||+.|+.+.
T Consensus 123 ~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 123 PDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 999998876544 78999999854 44666777777778899999999988764
No 385
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=0.1 Score=57.32 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=93.3
Q ss_pred CceEEEecCCCCCCceEEEEEcCC-cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSG-DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 253 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg-~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg 253 (548)
.+..+...++.. ...++-+.+| .|+.||++......... ...+.+.+...-......++.|.|.=....+++..|+
T Consensus 102 pi~~~v~~~D~t--~s~v~~tsng~~v~~fD~~~fs~s~~~~-~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dl 178 (1405)
T KOG3630|consen 102 PIVIFVCFHDAT--DSVVVSTSNGEAVYSFDLEEFSESRYET-TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDL 178 (1405)
T ss_pred cceEEEeccCCc--eEEEEEecCCceEEEEehHhhhhhhhhh-ccccccccchhccccccccccccCCccchhhhhcccc
Confidence 445555556532 1223333333 58899998742221111 1111111111113455678999998775678888999
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL 333 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~ 333 (548)
.|++..+.........++. ....++++|+|.|+.++.|-..|++.-|... .+.
T Consensus 179 sl~V~~~~~~~~~v~s~p~--------------------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-lei 231 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFPV--------------------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEI 231 (1405)
T ss_pred chhhhhhhhhhhhhcccCc--------------------------ccceeeEEeccccceeeEecCCCeEEEeecc-cce
Confidence 9999887642211111111 2568899999999999999999999999765 332
Q ss_pred EEeee---ec-CCceEEEEEccCCCEEEEE
Q 008939 334 ICGGK---SY-YGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 334 ~~~~~---~~-~~~v~~l~~spdg~~l~sg 359 (548)
...+. .. ...|.||.|-..-.+|++-
T Consensus 232 k~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 232 KSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred eecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 22221 11 3679999999887777764
No 386
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.91 E-value=2.3 Score=43.15 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=31.6
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 384 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
..+..|..+| ++ .+.++...=|.|.|+|+.++..++.++.
T Consensus 308 R~~~~i~~sP-------~~------~laA~tDslGRV~LiD~~~~~vvrmWKG 347 (415)
T PF14655_consen 308 REGESICLSP-------SG------RLAAVTDSLGRVLLIDVARGIVVRMWKG 347 (415)
T ss_pred ceEEEEEECC-------CC------CEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence 4567788888 77 5666665669999999999998888776
No 387
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.78 E-value=2.8 Score=43.08 Aligned_cols=204 Identities=16% Similarity=0.175 Sum_probs=108.0
Q ss_pred EEEecCCCCCCceEEEEE-cCCc----EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 178 CHAFDQDAKDGHDLLIGL-NSGD----VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 178 ~~~~~p~~~~~~~l~~g~-~dg~----I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
...++|+ +++|+.+. ..|. |+++|+++ ++.+...+. ......+.|.+++..++.+...+
T Consensus 128 ~~~~Spd---g~~la~~~s~~G~e~~~l~v~Dl~t-----g~~l~d~i~--------~~~~~~~~W~~d~~~~~y~~~~~ 191 (414)
T PF02897_consen 128 GFSVSPD---GKRLAYSLSDGGSEWYTLRVFDLET-----GKFLPDGIE--------NPKFSSVSWSDDGKGFFYTRFDE 191 (414)
T ss_dssp EEEETTT---SSEEEEEEEETTSSEEEEEEEETTT-----TEEEEEEEE--------EEESEEEEECTTSSEEEEEECST
T ss_pred eeeECCC---CCEEEEEecCCCCceEEEEEEECCC-----CcCcCCccc--------ccccceEEEeCCCCEEEEEEeCc
Confidence 4567777 77777774 4454 99999987 232222111 22223499999988555555433
Q ss_pred ----------CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCC--eEEEEECCCCCEEEEEEC-
Q 008939 253 ----------GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS--INSIAFSTDGTYLATVGR- 319 (548)
Q Consensus 253 ----------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~sp~g~~l~s~~~- 319 (548)
..|+.|.+.+... .....+...... ...+..++|+++|+....
T Consensus 192 ~~~~~~~~~~~~v~~~~~gt~~~------------------------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~ 247 (414)
T PF02897_consen 192 DQRTSDSGYPRQVYRHKLGTPQS------------------------EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSS 247 (414)
T ss_dssp TTSS-CCGCCEEEEEEETTS-GG------------------------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEES
T ss_pred ccccccCCCCcEEEEEECCCChH------------------------hCeeEEeecCCCcEEEEEEecCcccEEEEEEEc
Confidence 2367777765211 111222222222 567888999998775432
Q ss_pred --C-CeEEEEeCCCC----eEEEeeeecCCceE-EEEEccCCCEEEEEe---CCCeEEEEECCCcee---EEeccCCCC-
Q 008939 320 --D-GYLRVFDYSKE----QLICGGKSYYGALL-CCAWSMDGKYILTGG---EDDLVQVWSMEDRKV---VAWGEGHNS- 384 (548)
Q Consensus 320 --d-g~v~vwd~~~~----~~~~~~~~~~~~v~-~l~~spdg~~l~sgs---~dg~I~vwd~~~~~~---~~~~~~h~~- 384 (548)
+ ..+.+.|+..+ .....+......+. .+... .+.+++... .++.|...++.+... ...+..|..
T Consensus 248 ~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~ 326 (414)
T PF02897_consen 248 GTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED 326 (414)
T ss_dssp SSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS
T ss_pred cccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc
Confidence 2 35788888764 22223333333343 34333 444444332 245777778877642 224444655
Q ss_pred -CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC--eEEEEECCCCeEEeeeec
Q 008939 385 -WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT--RLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 385 -~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg--~i~lwd~~~~~~~~~~~~ 436 (548)
.+..+... .+ ++++..-.++ .|+++|+..+.....+..
T Consensus 327 ~~l~~~~~~--------~~------~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 327 VSLEDVSLF--------KD------YLVLSYRENGSSRLRVYDLDDGKESREIPL 367 (414)
T ss_dssp EEEEEEEEE--------TT------EEEEEEEETTEEEEEEEETT-TEEEEEEES
T ss_pred eeEEEEEEE--------CC------EEEEEEEECCccEEEEEECCCCcEEeeecC
Confidence 45555543 22 5666666664 588899884555555554
No 388
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.78 E-value=0.75 Score=49.21 Aligned_cols=218 Identities=19% Similarity=0.206 Sum_probs=111.5
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC-C-----cEEEEEeeecccccccceeeeeeeccC
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS-G-----DVYSVSLRQQLQDVGKKLVGAHHYNKD 225 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d-g-----~I~iwdl~~~~~~~~~~~~~~~~~~~~ 225 (548)
.+..+|..+..+..+..+.. +..-.+++.-. +...++|+.+ | .+..||.+...|.....+
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~~----~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M--------- 367 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPS-PRCRVGVAVLN----GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM--------- 367 (571)
T ss_pred eeEEecCCcCcEeecCCCCc-ccccccEEEEC----CEEEEEccccCCCcccceEEEecCCCCceeccCCc---------
Confidence 67777877654434433332 22223333332 5678888888 3 377788776333221111
Q ss_pred CcccCcceEEEEEecCCCcEEEEEeCCCc-----EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 226 GSVNNSRCTSVTWVPGGDGAFVVGHADGN-----LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 226 ~~~~~~~v~~l~~~p~~~~~l~s~~~dg~-----v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
...+...-.-.-+|. +.++|+.||. |..||..++. +.... +... ...
T Consensus 368 ---~~~R~~~~v~~l~g~-iYavGG~dg~~~l~svE~YDp~~~~-----W~~va----------------~m~~---~r~ 419 (571)
T KOG4441|consen 368 ---NTKRSDFGVAVLDGK-LYAVGGFDGEKSLNSVECYDPVTNK-----WTPVA----------------PMLT---RRS 419 (571)
T ss_pred ---cCccccceeEEECCE-EEEEeccccccccccEEEecCCCCc-----ccccC----------------CCCc---cee
Confidence 111111111122455 8888988864 5666665421 00000 0000 001
Q ss_pred CeEEEEECCCCCEEEEEECC------CeEEEEeCCCCeEE--EeeeecCCceEEEEEccCCCEEEEEeCCC-----eEEE
Q 008939 301 SINSIAFSTDGTYLATVGRD------GYLRVFDYSKEQLI--CGGKSYYGALLCCAWSMDGKYILTGGEDD-----LVQV 367 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~d------g~v~vwd~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~sgs~dg-----~I~v 367 (548)
..-.+.+ +|++.++|+.| ..+..||..+.+-. ..+..-..... ++ .-++.+.+.|+.|+ .|..
T Consensus 420 ~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ 495 (571)
T KOG4441|consen 420 GHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVER 495 (571)
T ss_pred eeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEE
Confidence 1112222 67777888755 35778888776532 22222112122 22 23677888888776 3777
Q ss_pred EECCCcee--EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC-----eEEEEECCCCeE
Q 008939 368 WSMEDRKV--VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT-----RLLLWDLEMDEI 430 (548)
Q Consensus 368 wd~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg-----~i~lwd~~~~~~ 430 (548)
||.++.+. +..+......+..+.. ++ ...+.|+.|+ +|..||..+++-
T Consensus 496 ydp~~~~W~~v~~m~~~rs~~g~~~~---------~~------~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 496 YDPETNQWTMVAPMTSPRSAVGVVVL---------GG------KLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred EcCCCCceeEcccCccccccccEEEE---------CC------EEEEEecccCccccceeEEcCCCCCce
Confidence 88887653 3333334444444444 55 6788888775 466666665543
No 389
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.76 E-value=0.026 Score=37.62 Aligned_cols=32 Identities=31% Similarity=0.646 Sum_probs=29.2
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKS 261 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~ 261 (548)
....|.+++|+|..+ +||.+..+|.|.+|+++
T Consensus 10 l~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence 356799999999999 99999999999999985
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=0.031 Score=60.80 Aligned_cols=105 Identities=21% Similarity=0.288 Sum_probs=76.7
Q ss_pred CCCEEEEEECCCeEEEEeCCCCe-EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQ-LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 388 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~ 388 (548)
.+..++.|+..|.+-..|+...- ....-..-.++|.+++|+.+|++++.|-.+|.|.+||+..++.++.+..|..++++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 34568888888999888886431 11222334578999999999999999999999999999999998888878777777
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+-+.-+.+ ++ ..++++...|. +|.+.
T Consensus 178 vi~v~~t~----~n------S~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTS----QN------SKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeC----CC------cEEEEccCCCc--eEEEE
Confidence 66543211 22 35777766665 66543
No 391
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.72 E-value=0.036 Score=36.98 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=29.7
Q ss_pred CCceEEEEEccCCCEEEEEeCCCeEEEEECCCcee
Q 008939 341 YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV 375 (548)
Q Consensus 341 ~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~ 375 (548)
...|.+++|+|...+||.+..+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356899999999999999999999999998 4443
No 392
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.68 E-value=4.4 Score=44.63 Aligned_cols=321 Identities=12% Similarity=0.150 Sum_probs=160.1
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eE--EEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AI--FISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v--~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
..++....|-.|..++.++.+| .+ ++.|..++.....++..+....+.-..|+.. +..-+.+..|.-..+|.-+
T Consensus 583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk---~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 583 PRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSK---SRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred chheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeC---CceEEEEeCCCCEEEEecC
Confidence 5566667777778888888777 44 4556655543444555556666777777766 3344555566665566544
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEE-EEecC-CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSV-TWVPG-GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l-~~~p~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
. +.+..... -..+..+ .|+.+ ....|+.+. .+.+.+.-++.-++.....-+.
T Consensus 660 ~------kLv~spls--------~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl----------- 713 (1096)
T KOG1897|consen 660 G------KLVYSPLS--------LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPL----------- 713 (1096)
T ss_pred C------cEEEeccc--------hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecC-----------
Confidence 3 22211111 1111111 12211 121344443 3567776665422111100000
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC-----------C---CeEEEEeCCCCeEEEeeee--c--CCceEE
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR-----------D---GYLRVFDYSKEQLICGGKS--Y--YGALLC 346 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-----------d---g~v~vwd~~~~~~~~~~~~--~--~~~v~~ 346 (548)
......+++.+....+++.+. . ..++++|-++-+.++..+- . .-.+.+
T Consensus 714 --------------~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s 779 (1096)
T KOG1897|consen 714 --------------GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIIS 779 (1096)
T ss_pred --------------CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeee
Confidence 023334444442222222221 1 2467777776665543221 1 123555
Q ss_pred EEEccC-CCEEEEEe----------CCCeEEEEECCCceeEEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 008939 347 CAWSMD-GKYILTGG----------EDDLVQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413 (548)
Q Consensus 347 l~~spd-g~~l~sgs----------~dg~I~vwd~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s 413 (548)
+.|..| +.++++|. ..|.|.|+.+.+.+.+..... -.+.|.++.-- +| +++|.
T Consensus 780 ~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--------ng------kllA~ 845 (1096)
T KOG1897|consen 780 CKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--------NG------KLLAG 845 (1096)
T ss_pred eeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--------CC------eEEEe
Confidence 668877 66788775 247888888877433332221 23455554422 56 45544
Q ss_pred EeCCCeEEEEECCCCeEEeeeec-CCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCC--ceEE-eecCCCCee
Q 008939 414 VGQDTRLLLWDLEMDEIVVPLRR-GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS--PLVA-HRVHTEPLS 489 (548)
Q Consensus 414 ~~~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~--~~~~-~~~h~~~V~ 489 (548)
-...|++|++.+.+.++.-.. ..+...+..... ...+.+|.+-.++.+-..+..+ .... -.-|...++
T Consensus 846 --In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~------gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmt 917 (1096)
T KOG1897|consen 846 --INQSVRLYEWTTERELRIECNISNPIIALDLQVK------GDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMT 917 (1096)
T ss_pred --cCcEEEEEEccccceehhhhcccCCeEEEEEEec------CcEEEEeeccceEEEEEEeccCCceEEeehhhCcccee
Confidence 457899999998854432211 112222222212 2344555555554443333222 1111 113556677
Q ss_pred EEEEeCC-eEEEEECCCeEEEEeCCCC
Q 008939 490 GLIFTQE-SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 490 ~l~fspd-~l~t~s~Dg~I~iW~~~~~ 515 (548)
++.+-.+ .++-+-.+|.+.+-..+..
T Consensus 918 aveil~~d~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 918 AVEILDDDTYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred eEEEecCceEEeecccccEEEEEecCC
Confidence 7776554 5777778888888876643
No 393
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.67 E-value=4.2 Score=44.95 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=75.2
Q ss_pred CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCc--------eEEEEEc----------------cCCCEEEEEeCCCeEE
Q 008939 311 GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA--------LLCCAWS----------------MDGKYILTGGEDDLVQ 366 (548)
Q Consensus 311 g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~--------v~~l~~s----------------pdg~~l~sgs~dg~I~ 366 (548)
+..|+.++.++.|.-.|.++|+.+..+...... .+.+++. .++..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777888899999999999988776532210 1223332 1344788899999999
Q ss_pred EEECCCceeEEeccCCCCCeE---EEEEec-----CCCCCC-CCCCccceeEEEEEEeC----------CCeEEEEECCC
Q 008939 367 VWSMEDRKVVAWGEGHNSWVS---GVAFDS-----YWSQPN-SDGTAETVMYRFGSVGQ----------DTRLLLWDLEM 427 (548)
Q Consensus 367 vwd~~~~~~~~~~~~h~~~V~---~v~~~p-----~~~~~~-~dg~~~~~~~~l~s~~~----------Dg~i~lwd~~~ 427 (548)
-.|.++++.+..+. .++.|. .+.-.+ ..++|. .++ .++.++. +|.|+-+|+++
T Consensus 274 ALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-------~VIvG~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 274 ALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-------TVVIGGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred EEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECC-------EEEEEecccccccccCCCcEEEEEECCC
Confidence 99999999887654 222221 000000 001111 133 4555532 68899999999
Q ss_pred CeEEeeeecC
Q 008939 428 DEIVVPLRRG 437 (548)
Q Consensus 428 ~~~~~~~~~~ 437 (548)
|+++..+...
T Consensus 346 Gkl~W~~~~g 355 (764)
T TIGR03074 346 GALVWAWDPG 355 (764)
T ss_pred CcEeeEEecC
Confidence 9999988753
No 394
>PHA02713 hypothetical protein; Provisional
Probab=95.51 E-value=0.25 Score=52.79 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=42.1
Q ss_pred CCCEEEEEECC------CeEEEEeCCC-Ce--EEEeeeecCCceEEEEEccCCCEEEEEeCCC--eEEEEECCCceeEEe
Q 008939 310 DGTYLATVGRD------GYLRVFDYSK-EQ--LICGGKSYYGALLCCAWSMDGKYILTGGEDD--LVQVWSMEDRKVVAW 378 (548)
Q Consensus 310 ~g~~l~s~~~d------g~v~vwd~~~-~~--~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg--~I~vwd~~~~~~~~~ 378 (548)
++++.+.|+.+ ..+..||.++ .+ .+..+.........+.+ ++++.++|+.|+ .+..||..+.+-...
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccch
Confidence 45666666654 2467899886 33 33333322222222222 788899999888 778888877654433
Q ss_pred ccCCC
Q 008939 379 GEGHN 383 (548)
Q Consensus 379 ~~~h~ 383 (548)
...|.
T Consensus 541 ~~~~~ 545 (557)
T PHA02713 541 CHQHS 545 (557)
T ss_pred hhhcC
Confidence 33343
No 395
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.32 E-value=2.7 Score=39.85 Aligned_cols=173 Identities=10% Similarity=0.168 Sum_probs=102.4
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
...+..+.|+|+.+.+++..++ .-.||=-..++ .++++.... ..+-.++|--+ +.+.++--.++.++++.+..
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gd--lirtiPL~g~~DpE~Ieyig~---n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGD--LIRTIPLTGFSDPETIEYIGG---NQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCc--eEEEecccccCChhHeEEecC---CEEEEEehhcceEEEEEEcC
Confidence 3448899999999999887777 55555444443 677765432 24455566655 66667667788898888775
Q ss_pred cccccccceeeeeeeccCCccc-CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcc--cccccceeeeecC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVN-NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFP--VIKDQTQFSVAHP 284 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~ 284 (548)
...- .......+.-....+ +...-.++|.|.++ .|..+-+-.-+.||.+.........-. .......+.
T Consensus 160 ~t~~---~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f---- 231 (316)
T COG3204 160 DTTV---ISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF---- 231 (316)
T ss_pred CccE---EeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccccccccCcccccceE----
Confidence 3100 000000111111112 55678999999998 777777777788887763221111000 000111111
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCC
Q 008939 285 RYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYS 329 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~ 329 (548)
-..|.++.|++ .+.+|+-+..++.|.-.|..
T Consensus 232 --------------~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 232 --------------VLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred --------------eeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 14588899997 56667777778888878775
No 396
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.21 E-value=0.068 Score=48.23 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=48.3
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEE-EeeeecCCceEE-EEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCC
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLI-CGGKSYYGALLC-CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN 383 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~v~~-l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~ 383 (548)
-+..++.|+.+|.|.+|+..-.-.. -....-...|.+ +.--.++.+..++..|+.|+.|++.-.+.+...-.|+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 3567899999999999988621111 111111222322 2233355678899999999999999887777666666
No 397
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.16 E-value=1.1 Score=45.18 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=57.6
Q ss_pred CCceeEEeCCCCCEEEEec-------------CCeEEEEEccCC--CCCCeEEEecCCCCceEEEecCCCCCCceEEEEE
Q 008939 131 TSMTNTNFDGKGTYIIFNV-------------GDAIFISDLNSQ--DKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL 195 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~-------------~d~v~vwd~~~~--~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~ 195 (548)
..+..++|+++|+++++.. ++.|++++-..+ ..+.+..+.-.-..+..+++.++ + |+++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~---G--lyV~~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG---G--VYVAT 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC---C--EEEeC
Confidence 4566899999999888753 236666654432 22233343333446788999887 5 55554
Q ss_pred cCCcEEEE-Eeeeccccc-ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEE
Q 008939 196 NSGDVYSV-SLRQQLQDV-GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV 248 (548)
Q Consensus 196 ~dg~I~iw-dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s 248 (548)
.. .|..| |........ .++.+. ..+......+......++|.|+|. +.++
T Consensus 89 ~~-~i~~~~d~~gdg~ad~~~~~l~-~~~~~~~~~~~~~~~~l~~gpDG~-LYv~ 140 (367)
T TIGR02604 89 PP-DILFLRDKDGDDKADGEREVLL-SGFGGQINNHHHSLNSLAWGPDGW-LYFN 140 (367)
T ss_pred CC-eEEEEeCCCCCCCCCCccEEEE-EccCCCCCcccccccCceECCCCC-EEEe
Confidence 44 45444 443211111 111111 111111111234578899999997 4443
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.13 Score=56.31 Aligned_cols=98 Identities=19% Similarity=0.366 Sum_probs=70.3
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee-ecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
.++.|+..|.+...|+..+ .. +. .+. .-+++|++++|+.+|..++.|-.+|.|
T Consensus 101 ~ivi~Ts~ghvl~~d~~~n--L~-----------------------~~-~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V 154 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGN--LG-----------------------PL-HQNERVQGPVTSVAFNQDGSLLLAGLGDGHV 154 (1206)
T ss_pred eEEEEcCchhhhhhhhhcc--cc-----------------------hh-hcCCccCCcceeeEecCCCceeccccCCCcE
Confidence 6788888888888887642 00 00 000 114899999999999999999999999
Q ss_pred EEEeCCCCeEEEeeeecCCceE---EEEEccCCCEEEEEeCCCeEEEEEC
Q 008939 324 RVFDYSKEQLICGGKSYYGALL---CCAWSMDGKYILTGGEDDLVQVWSM 370 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~---~l~~spdg~~l~sgs~dg~I~vwd~ 370 (548)
.+||+..++.+..+..|..+.. -+.+..++..++++...|. +|.+
T Consensus 155 ~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 155 TVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 9999999888877766655444 3445556667777776665 5543
No 399
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.09 E-value=4 Score=40.52 Aligned_cols=260 Identities=15% Similarity=0.172 Sum_probs=123.0
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe----cCCCCceEEEecCCCCCCceEEEEEcC---------C
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH----FSNSNPVCHAFDQDAKDGHDLLIGLNS---------G 198 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~----~~~~~~~~~~~~p~~~~~~~l~~g~~d---------g 198 (548)
.+..++|.|+|+++++.-...|++++........+..+. ........++++|+-....+|++.... .
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 457899999999988877669999993321112333331 123466899999974444555555552 1
Q ss_pred cEEEEEeeec--ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc-----------EEEEEcCCCCC
Q 008939 199 DVYSVSLRQQ--LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN-----------LYVYEKSKDGA 265 (548)
Q Consensus 199 ~I~iwdl~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~-----------v~vwd~~~~~~ 265 (548)
.|.-|.+... .....+.++..... ... ....-..|.|.|++. ++++.+..+. =+|+.++.++.
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~-~~~--~~H~g~~l~fgpDG~-LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~ 158 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPD-TSS--GNHNGGGLAFGPDGK-LYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS 158 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES--CS--SSS-EEEEEE-TTSE-EEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS
T ss_pred eeEEEeccCCccccccceEEEEEeCC-CCC--CCCCCccccCCCCCc-EEEEeCCCCCcccccccccccceEEEecccCc
Confidence 3544544432 00111112111111 011 233446699999997 5555443332 11222222111
Q ss_pred CCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEE-ECCCeEEEEeCCCCe-----------
Q 008939 266 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATV-GRDGYLRVFDYSKEQ----------- 332 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~-~~dg~v~vwd~~~~~----------- 332 (548)
....-+... ........|..--.....++|+|. |.++++= +.|..=.|.-+..+.
T Consensus 159 ~p~dnP~~~------------~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~ 226 (331)
T PF07995_consen 159 IPADNPFVG------------DDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGP 226 (331)
T ss_dssp B-TTSTTTT------------STTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSC
T ss_pred CCCCCcccc------------CCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCC
Confidence 110000000 000111223222245678999997 7655542 233322222222111
Q ss_pred ------------------EEEeeeecCCceEEEEEcc-------CCCEEEEEeCCCeEEEEECCCceeE----EeccCCC
Q 008939 333 ------------------LICGGKSYYGALLCCAWSM-------DGKYILTGGEDDLVQVWSMEDRKVV----AWGEGHN 383 (548)
Q Consensus 333 ------------------~~~~~~~~~~~v~~l~~sp-------dg~~l~sgs~dg~I~vwd~~~~~~~----~~~~~h~ 383 (548)
.+..+..| ..+..+.|-. .|.+++..-..+.|....++....+ ..+....
T Consensus 227 ~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 305 (331)
T PF07995_consen 227 KYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFG 305 (331)
T ss_dssp STTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSS
T ss_pred CCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCC
Confidence 11222222 4455666653 4456666666678888888654322 2233445
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 384 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
..+..|++.| || .++++...+|.|.
T Consensus 306 ~r~~~v~~~p-------DG------~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 306 GRPRDVAQGP-------DG------ALYVSDDSDGKIY 330 (331)
T ss_dssp S-EEEEEEET-------TS------EEEEEE-TTTTEE
T ss_pred CCceEEEEcC-------CC------eEEEEECCCCeEe
Confidence 5799999999 99 6777766777764
No 400
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.94 E-value=0.78 Score=47.37 Aligned_cols=114 Identities=14% Similarity=0.212 Sum_probs=75.4
Q ss_pred CCeEEEEECCC----CCEEEEEECCCeEEEEeCC-----CCeEEEeeeecC---C--ceEEEEEccCCCEEEEEeCCCeE
Q 008939 300 GSINSIAFSTD----GTYLATVGRDGYLRVFDYS-----KEQLICGGKSYY---G--ALLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 300 ~~v~~~~~sp~----g~~l~s~~~dg~v~vwd~~-----~~~~~~~~~~~~---~--~v~~l~~spdg~~l~sgs~dg~I 365 (548)
.-|.++.|.|- -.-|++.-....|.||.+. +.+.+.....+- - --..|.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 35889999984 3356666678899999885 333333322211 1 12457899999998887766665
Q ss_pred EEEECCC--ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 366 QVWSMED--RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 366 ~vwd~~~--~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
.+++++. .+....+. -.+-|.|.+|.+ ||. +++++.+..=.-++||-.
T Consensus 137 V~~sV~~d~srVkaDi~-~~G~IhCACWT~-------DG~-----RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIK-TSGLIHCACWTK-------DGQ-----RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeeeeeeCCceEEEecc-CCceEEEEEecC-------cCC-----EEEEEeCCeEEEEEecCc
Confidence 6666654 34444454 667899999999 993 455555655567889853
No 401
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.79 E-value=0.69 Score=46.36 Aligned_cols=112 Identities=12% Similarity=0.139 Sum_probs=56.7
Q ss_pred CeEEEEEccCCCCCCeEEEecCCC--CceEEEecCCCCCCceEEEEEcCCcEEEEEe-eecccccccceeeeeeeccCC-
Q 008939 151 DAIFISDLNSQDKDPIKSIHFSNS--NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL-RQQLQDVGKKLVGAHHYNKDG- 226 (548)
Q Consensus 151 d~v~vwd~~~~~~~~i~~~~~~~~--~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl-~~~~~~~~~~~~~~~~~~~~~- 226 (548)
+.+.+||+.+. +.++.+..... .+..+.|..+.....-++.+.-...|..|-- +...+. .++++.......++
T Consensus 222 ~~l~vWD~~~r--~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~-a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 222 HSLHVWDWSTR--KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA-AEKVIDIPAKKVEGW 298 (461)
T ss_dssp -EEEEEETTTT--EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE-EEEEEEE--EE--SS
T ss_pred CeEEEEECCCC--cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee-eeEEEECCCcccCcc
Confidence 48999999984 48888887654 4677888766443333444445566666644 221111 12222211110000
Q ss_pred ---------cccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 008939 227 ---------SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 265 (548)
Q Consensus 227 ---------~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~ 265 (548)
.....-|++|..+.|++.+.+++-.+|.|+-||+.....
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 112456899999999995566667899999999986433
No 402
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.63 E-value=0.92 Score=48.76 Aligned_cols=119 Identities=11% Similarity=0.133 Sum_probs=70.7
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC--CCCCEEEEEECCCe
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS--TDGTYLATVGRDGY 322 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--p~g~~l~s~~~dg~ 322 (548)
+|+.|..||.|.+|.++.--....... .+.... ..-..-.|-..++. ..++.+++++ ...++||+++....
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~--~~~~~~----~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~ 188 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFS--EDNDSG----FSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQE 188 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhc--cccccc----cccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCce
Confidence 899999999999998743000000000 000000 00011123333332 2589999998 77788898888888
Q ss_pred EEEEeCCCC--eEEE-eeeecCCceEEEEEccCC---C---EEEEEeCCCeEEEEEC
Q 008939 323 LRVFDYSKE--QLIC-GGKSYYGALLCCAWSMDG---K---YILTGGEDDLVQVWSM 370 (548)
Q Consensus 323 v~vwd~~~~--~~~~-~~~~~~~~v~~l~~spdg---~---~l~sgs~dg~I~vwd~ 370 (548)
|.||-+... +... .-..+...|.+|.|-++. . +|++++-.|.+.+|++
T Consensus 189 VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 189 VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888866532 1111 111255668899987644 2 7778888999988887
No 403
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.62 E-value=3.8 Score=42.61 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=74.2
Q ss_pred CCceEEEecCCCCC-CceEEEEEcCCcEEEEEeeecccccccceeee-eeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 174 SNPVCHAFDQDAKD-GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGA-HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 174 ~~~~~~~~~p~~~~-~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
..+..+.|.|.... .-.|++.-....|.+|.+.....+..+.+... ....+.. .---..+.|+|... +|++-..
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~---pvLpQGCVWHPk~~-iL~VLT~ 132 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPF---PVLPQGCVWHPKKA-ILTVLTA 132 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCc---ccCCCcccccCCCc-eEEEEec
Confidence 46788899987443 33566677778999999875333434433221 1111111 11123567999998 7777655
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYS 329 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~ 329 (548)
...-.+++++.+.. .++.=-.-.+-|.|.+|.+||+.|+++- ..=.-.|||-.
T Consensus 133 ~dvSV~~sV~~d~s-------------------------rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSS-------------------------RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCc-------------------------eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 55545666654221 1111111248899999999998877653 22335688764
No 404
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.56 E-value=0.0093 Score=63.38 Aligned_cols=205 Identities=14% Similarity=0.185 Sum_probs=113.1
Q ss_pred CCCeEEEEECC-CCCEEEEEECCCeEEEEeCC--CCeEE-----EeeeecCCceEEEEEcc---CCCEEEEEeCCCeEEE
Q 008939 299 QGSINSIAFST-DGTYLATVGRDGYLRVFDYS--KEQLI-----CGGKSYYGALLCCAWSM---DGKYILTGGEDDLVQV 367 (548)
Q Consensus 299 ~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~--~~~~~-----~~~~~~~~~v~~l~~sp---dg~~l~sgs~dg~I~v 367 (548)
.+.|-.+.|-. +-..++ -.-|.+.|||+. .|++. ........++.-+.|.| +.-++..+-.++.|++
T Consensus 132 ~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~l 209 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRL 209 (1283)
T ss_pred CCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeE
Confidence 36677777743 212222 233678999875 34332 22233444556666765 4556777777889988
Q ss_pred EECCCceeEEeccCCCCCeEEEEEecC----CCCCCCCCCccceeEEEEEEeCCCeEEEEECC-----CCeEEeeeecCC
Q 008939 368 WSMEDRKVVAWGEGHNSWVSGVAFDSY----WSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE-----MDEIVVPLRRGP 438 (548)
Q Consensus 368 wd~~~~~~~~~~~~h~~~V~~v~~~p~----~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~-----~~~~~~~~~~~~ 438 (548)
.++.+... ..+++|..++..++|-.- -..-.+|| ..++.++.||.+++|.+- ...|+...+.+.
T Consensus 210 L~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG------tv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 210 LNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDG------TVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCC------cEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 87765332 445668777766554210 00001188 789999999988888653 333444444332
Q ss_pred CCCCceecCCC------CccccCCeeeecccCCCCceeecCCCCceEE--------eecCCCCeeEEEEeC---CeEEEE
Q 008939 439 LGGSPTFSTGS------QSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA--------HRVHTEPLSGLIFTQ---ESVLTV 501 (548)
Q Consensus 439 ~~~~~~~~~~~------~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~--------~~~h~~~V~~l~fsp---d~l~t~ 501 (548)
..-.+|+.... ....|.-.|.........++|.-..++++.. ...|...|+.+.... ..+++-
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r 362 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSR 362 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHh
Confidence 22233333222 1445665666666667788887666665511 112333333222211 126677
Q ss_pred ECCCeEEEEeC
Q 008939 502 CREGHIKIWMR 512 (548)
Q Consensus 502 s~Dg~I~iW~~ 512 (548)
+-|+.|++|--
T Consensus 363 ~v~~~i~~~qn 373 (1283)
T KOG1916|consen 363 SVDGTIKIWQN 373 (1283)
T ss_pred hhHHHHHHhhc
Confidence 88899999973
No 405
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.52 E-value=3.1 Score=39.46 Aligned_cols=134 Identities=20% Similarity=0.131 Sum_probs=78.8
Q ss_pred cceEEEEEecCCCcEEEEEeCC--CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 231 SRCTSVTWVPGGDGAFVVGHAD--GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 231 ~~v~~l~~~p~~~~~l~s~~~d--g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
..+...++++++..+.++...+ ..|+++.... ...... . ...+..-.|+
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~-------------------------~--g~~l~~PS~d 74 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL-------------------------T--GGSLTRPSWD 74 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec-------------------------c--CCcccccccc
Confidence 3688999999998444444233 3455554332 111111 1 1467778899
Q ss_pred CCCCEEEEEECCCeEEEEe-CCCCeE--EE-eeeecCCceEEEEEccCCCEEEEEe---CCCeEEEEECC---Cc-----
Q 008939 309 TDGTYLATVGRDGYLRVFD-YSKEQL--IC-GGKSYYGALLCCAWSMDGKYILTGG---EDDLVQVWSME---DR----- 373 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd-~~~~~~--~~-~~~~~~~~v~~l~~spdg~~l~sgs---~dg~I~vwd~~---~~----- 373 (548)
+++...+....+...+++. ...++. +. ......+.|..+.+||||..++.-. .++.|.+--+. .+
T Consensus 75 ~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l 154 (253)
T PF10647_consen 75 PDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL 154 (253)
T ss_pred CCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee
Confidence 9987777766666666663 333322 11 1111122799999999999877654 35777776553 22
Q ss_pred -eeEEeccCCCCCeEEEEEec
Q 008939 374 -KVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 374 -~~~~~~~~h~~~V~~v~~~p 393 (548)
..+.........+..+.|.+
T Consensus 155 ~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 155 TGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred ccceEecccccCcceeeeecC
Confidence 11222223456889999988
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.51 E-value=1.4 Score=44.35 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=48.9
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEeCCC-------CeEEE-eeee----cCCceEEEEEccCCCEEEEEeCC-----
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSK-------EQLIC-GGKS----YYGALLCCAWSMDGKYILTGGED----- 362 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-------~~~~~-~~~~----~~~~v~~l~~spdg~~l~sgs~d----- 362 (548)
...+.++|.+++ |+++.....+++.|... .+.+. .+.. +......++|.|||.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 446789999988 44444444333445431 12222 2222 12447789999999876654421
Q ss_pred --------------CeEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 363 --------------DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 363 --------------g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
+.|.-+|.+.++......++ .....++|+|
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~ 193 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDS 193 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECC
Confidence 34555555554433222333 3345788888
No 407
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.50 E-value=8.3 Score=42.72 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=62.1
Q ss_pred CCeEEEEeCCCCeEEEeeeec---------CCc--------e-EEEEEccCCCEEEEEeC------------------CC
Q 008939 320 DGYLRVFDYSKEQLICGGKSY---------YGA--------L-LCCAWSMDGKYILTGGE------------------DD 363 (548)
Q Consensus 320 dg~v~vwd~~~~~~~~~~~~~---------~~~--------v-~~l~~spdg~~l~sgs~------------------dg 363 (548)
+|.|+-+|.++|+++..+..- .+. + ...++.+...+++.+.. .+
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS 414 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence 688999999999998765421 000 0 22344444444443221 23
Q ss_pred eEEEEECCCceeEEeccC--CCCCe-------EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 364 LVQVWSMEDRKVVAWGEG--HNSWV-------SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~--h~~~V-------~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
.|.-.|.++++.+-.++. |+-+= .-+.+.- .+| .....++.+..+|.+.+.|-++|+.+...
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~------~~G---~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPD------ADG---TTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeec------CCC---cEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 455567777776655542 32211 1111110 033 12247889999999999999999988765
Q ss_pred e
Q 008939 435 R 435 (548)
Q Consensus 435 ~ 435 (548)
+
T Consensus 486 ~ 486 (764)
T TIGR03074 486 E 486 (764)
T ss_pred e
Confidence 4
No 408
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.38 E-value=0.56 Score=51.89 Aligned_cols=92 Identities=15% Similarity=-0.022 Sum_probs=63.4
Q ss_pred CCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCeEE-EeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 300 GSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQLI-CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 300 ~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
.-..++.|.|.- ...+.+..|+.|++..+...... ..+. .....+|++|+|.|+.+++|-..|++.-|-.. .+...
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~ 233 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKS 233 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceee
Confidence 345578888853 34667778999999887643322 2222 44678999999999999999999999988654 33222
Q ss_pred eccC----CCCCeEEEEEec
Q 008939 378 WGEG----HNSWVSGVAFDS 393 (548)
Q Consensus 378 ~~~~----h~~~V~~v~~~p 393 (548)
.+.+ ....|.+|.|-.
T Consensus 234 ~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 234 EIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred cccCCCcCCCcceeEEEEec
Confidence 3321 136788999964
No 409
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.36 E-value=4.7 Score=41.48 Aligned_cols=65 Identities=8% Similarity=0.038 Sum_probs=42.2
Q ss_pred CCceeEEeCCCCCEEEEecC-CeEEEEEccCCCCCCeEEEe-----cCCCCceEEEecCCC---CCCceEEEEE
Q 008939 131 TSMTNTNFDGKGTYIIFNVG-DAIFISDLNSQDKDPIKSIH-----FSNSNPVCHAFDQDA---KDGHDLLIGL 195 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~-d~v~vwd~~~~~~~~i~~~~-----~~~~~~~~~~~~p~~---~~~~~l~~g~ 195 (548)
..+..++|.|||+++++.-. ..|++++........+..+. ........++++|+- ....+|++..
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy 103 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY 103 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence 35568999999998888763 58888876543322222111 134678999999985 4445666654
No 410
>PHA03098 kelch-like protein; Provisional
Probab=94.25 E-value=3.3 Score=44.23 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=54.2
Q ss_pred CCCEEEEEECC------CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC--------CeEEEEECCCc
Q 008939 310 DGTYLATVGRD------GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED--------DLVQVWSMEDR 373 (548)
Q Consensus 310 ~g~~l~s~~~d------g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d--------g~I~vwd~~~~ 373 (548)
++++++.|+.+ ..+..||..+.+-... +....... + +...++++++.|+.+ ..+.+||..+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 55666666632 4578899876643221 11111111 2 223356677777643 23888998876
Q ss_pred eeEE--eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCCeE
Q 008939 374 KVVA--WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDEI 430 (548)
Q Consensus 374 ~~~~--~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~~~ 430 (548)
+-.. .+.........+.+ ++ .+++.||.+ ..|.+||..+.+-
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~---------~~------~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF---------NN------KIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred ceeeCCCCCcccccceEEEE---------CC------EEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 5322 22111111222333 44 566677654 4678888877654
No 411
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.91 E-value=7.6 Score=38.82 Aligned_cols=119 Identities=23% Similarity=0.264 Sum_probs=77.0
Q ss_pred CCeEEEEE--CC-CCC-EEEEEECCCeEEEEeCC---CC----eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 008939 300 GSINSIAF--ST-DGT-YLATVGRDGYLRVFDYS---KE----QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 368 (548)
Q Consensus 300 ~~v~~~~~--sp-~g~-~l~s~~~dg~v~vwd~~---~~----~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vw 368 (548)
..++.+|+ ++ +|+ +++....+|.+..|.+. .+ ++++.+.. ...+..|.......+|+.+-++.-|.-|
T Consensus 156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y 234 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRY 234 (381)
T ss_dssp SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEE
T ss_pred ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEE
Confidence 34677776 34 455 55667788999888774 33 35666654 3578889998888899999999888888
Q ss_pred ECCC-----ceeEEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 369 SMED-----RKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 369 d~~~-----~~~~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+.+- ++.+....+ ....|..|+.-.. . +| ..++|+|.-.++...+||.+..
T Consensus 235 ~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~---~--~g----~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 235 DAEPEGGNDRTLVASADGDGLVADVEGLALYYG---S--DG----KGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp ESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE----C--CC-----EEEEEEEGGGTEEEEEESSTT
T ss_pred ecCCCCCCcceeeecccccccccCccceEEEec---C--CC----CeEEEEEcCCCCeEEEEecCCC
Confidence 8762 234444332 4567888887430 0 22 2277888878899999998753
No 412
>PHA03098 kelch-like protein; Provisional
Probab=93.62 E-value=2.6 Score=44.95 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=34.7
Q ss_pred CCCEEEEEECC--------CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCce
Q 008939 310 DGTYLATVGRD--------GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRK 374 (548)
Q Consensus 310 ~g~~l~s~~~d--------g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~ 374 (548)
+++.++.|+.+ ..+.+||..+++-... +.........+. .++++++.|+.+ ..|.+||.++.+
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 45566666532 2388899887653221 111111112222 267777777764 468888887764
No 413
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.50 E-value=5 Score=43.36 Aligned_cols=118 Identities=11% Similarity=0.067 Sum_probs=77.9
Q ss_pred CCeEEEEECC--CCCEEEEEECCCeEEEEeCCC-------C----e---------EEEeeeecCCceEEEEEc--cCCCE
Q 008939 300 GSINSIAFST--DGTYLATVGRDGYLRVFDYSK-------E----Q---------LICGGKSYYGALLCCAWS--MDGKY 355 (548)
Q Consensus 300 ~~v~~~~~sp--~g~~l~s~~~dg~v~vwd~~~-------~----~---------~~~~~~~~~~~v~~l~~s--pdg~~ 355 (548)
..|+.|.... +...|+.+..||.|.+|.+++ . + +...++ -...++.++++ ...++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceE
Confidence 4567666554 556899999999999997631 0 0 111222 23468889998 77888
Q ss_pred EEEEeCCCeEEEEECCCc--ee-EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 356 ILTGGEDDLVQVWSMEDR--KV-VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 356 l~sgs~dg~I~vwd~~~~--~~-~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
||++++...|.||-.... +. ...-..|...|-+|.|-+ +..+....-.+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~-------~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLD-------DDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeec-------CCCCCccceEEEEEeccCcEEEEEE
Confidence 999999899999866542 11 111112667888999987 3211111137888899999999888
No 414
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.40 E-value=12 Score=40.19 Aligned_cols=184 Identities=14% Similarity=0.180 Sum_probs=97.3
Q ss_pred eEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccc
Q 008939 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK 214 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~ 214 (548)
.+..+|....=+++..-.|+|+++.. ..+..+.+....+..+.|+.+. .|++-..+|.+++|++-....+...
T Consensus 48 AV~r~p~~~~~~~~a~~~I~If~~sG---~lL~~~~w~~~~lI~mgWs~~e----eLI~v~k~g~v~Vy~~~ge~ie~~s 120 (829)
T KOG2280|consen 48 AVTRSPSKLVPLYSARPYIRIFNISG---QLLGRILWKHGELIGMGWSDDE----ELICVQKDGTVHVYGLLGEFIESNS 120 (829)
T ss_pred EEEecccccccccccceeEEEEeccc---cchHHHHhcCCCeeeecccCCc----eEEEEeccceEEEeecchhhhcccc
Confidence 34444433322232223688888874 4677777766688889998763 5889999999999998753221110
Q ss_pred ceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc---c-ceeeeecCC-----
Q 008939 215 KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD---Q-TQFSVAHPR----- 285 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~---~-~~~~~~~~~----- 285 (548)
+ -.......|..+.+..+| +++-..+|.+.+-.-.. ......++.++. . ....+....
T Consensus 121 -v--------g~e~~~~~I~ec~~f~~G---Vavlt~~g~v~~i~~~~-~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ 187 (829)
T KOG2280|consen 121 -V--------GFESQMSDIVECRFFHNG---VAVLTVSGQVILINGVE-EPKLRKMPDIPYNELPKSCWTVFQPHRQSTI 187 (829)
T ss_pred -c--------ccccccCceeEEEEecCc---eEEEecCCcEEEEcCCC-cchhhhCCCCCCccCCCcceeEecCCCccee
Confidence 0 000123345555554444 23333445554432111 111111111000 0 000000000
Q ss_pred ---------------CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee
Q 008939 286 ---------------YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK 338 (548)
Q Consensus 286 ---------------~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~ 338 (548)
.........+......+..+..||+.++|+--..+|.|.+-+....+..+.+.
T Consensus 188 ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 188 LLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 00011111122223677889999999999999999999999888777766655
No 415
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.27 E-value=8 Score=37.03 Aligned_cols=243 Identities=12% Similarity=0.111 Sum_probs=126.9
Q ss_pred eEEeCCCCCEEEEecCC-eEEEEEccCC-----CCCCeEEEec-----CCCCceEEEecCCCC---------CCceEEEE
Q 008939 135 NTNFDGKGTYIIFNVGD-AIFISDLNSQ-----DKDPIKSIHF-----SNSNPVCHAFDQDAK---------DGHDLLIG 194 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d-~v~vwd~~~~-----~~~~i~~~~~-----~~~~~~~~~~~p~~~---------~~~~l~~g 194 (548)
-++|+|.+.+.+...+- ...+||.+.. ....+-.+.. .+..++.+.|+.... ....++.+
T Consensus 27 Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~ 106 (336)
T TIGR03118 27 GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFV 106 (336)
T ss_pred eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEE
Confidence 58999999877775554 8899998711 1112333332 234788888885422 12347889
Q ss_pred EcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceE-EEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCCcc
Q 008939 195 LNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCT-SVTWVPG--GDGAFVVGHADGNLYVYEKSKDGAGDSSFP 271 (548)
Q Consensus 195 ~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~p~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 271 (548)
+.+|+|.-|.... ++.+.......+... ....|+ .+++... +..+.++=-..++|.|||-.-..... . -
T Consensus 107 tEdGTisaW~p~v---~~t~~~~~~~~~d~s---~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~-~-g 178 (336)
T TIGR03118 107 TEDGTLSGWAPAL---GTTRMTRAEIVVDAS---QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL-P-G 178 (336)
T ss_pred eCCceEEeecCcC---CcccccccEEEEccC---CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC-C-C
Confidence 9999999998532 111100111112111 123333 4555533 44233444467999999865421100 0 0
Q ss_pred cccccceeeeecCCCCCCCCeeEeeecC-CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee--cCCceEEEE
Q 008939 272 VIKDQTQFSVAHPRYSKSNPIARWHICQ-GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--YYGALLCCA 348 (548)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~ 348 (548)
...++. -.....|........ --|+-..-.++++.=+.+---|.|-+||+. +++++.+.. .-..-+.|+
T Consensus 179 ~F~DP~-------iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a 250 (336)
T TIGR03118 179 SFIDPA-------LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLA 250 (336)
T ss_pred CccCCC-------CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceee
Confidence 000000 000011111111100 001111112233333334445799999986 777766532 223345566
Q ss_pred Ecc------CCCEEEEEeCCCeEEEEECCCceeEEeccCCC------CCeEEEEEec
Q 008939 349 WSM------DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN------SWVSGVAFDS 393 (548)
Q Consensus 349 ~sp------dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~------~~V~~v~~~p 393 (548)
..| .|.+|+---.||+|..+|..+++.+..+.... ..++.|.|..
T Consensus 251 ~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 251 IAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 655 45666666679999999999998887776433 3567788854
No 416
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.25 E-value=5.5 Score=42.71 Aligned_cols=189 Identities=16% Similarity=0.179 Sum_probs=99.6
Q ss_pred CceEEEEEcCC------cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC------CcE
Q 008939 188 GHDLLIGLNSG------DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD------GNL 255 (548)
Q Consensus 188 ~~~l~~g~~dg------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d------g~v 255 (548)
+.++++|+..+ .|..+|.....+.....+. ....-.+++...+ . ++++|+.| .++
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-----------~~r~~~~~~~~~~-~-lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-----------SPRCRVGVAVLNG-K-LYVVGGYDSGSDRLSSV 351 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-----------cccccccEEEECC-E-EEEEccccCCCcccceE
Confidence 55777887774 4777777663222222111 1222345555443 4 88889888 356
Q ss_pred EEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCe-----EEEEeCCC
Q 008939 256 YVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGY-----LRVFDYSK 330 (548)
Q Consensus 256 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-----v~vwd~~~ 330 (548)
..||.+.+. ....++..... +...+.. -+|.+.++|+.||. +-.||..+
T Consensus 352 e~YD~~~~~--W~~~a~M~~~R--------------------~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 352 ERYDPRTNQ--WTPVAPMNTKR--------------------SDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred EEecCCCCc--eeccCCccCcc--------------------ccceeEE----ECCEEEEEeccccccccccEEEecCCC
Confidence 677776532 11111111100 0011111 26778888888864 77788776
Q ss_pred CeE--EEeeeecCCceEEEEEccCCCEEEEEeCCC------eEEEEECCCcee--EEeccCCCCCeEEEEEecCCCCCCC
Q 008939 331 EQL--ICGGKSYYGALLCCAWSMDGKYILTGGEDD------LVQVWSMEDRKV--VAWGEGHNSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 331 ~~~--~~~~~~~~~~v~~l~~spdg~~l~sgs~dg------~I~vwd~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~~ 400 (548)
.+- +..+....... -.-.-+|++.++|+.++ .+..||..+.+. +..+.--........+
T Consensus 406 ~~W~~va~m~~~r~~~--gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--------- 474 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGH--GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--------- 474 (571)
T ss_pred CcccccCCCCcceeee--EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE---------
Confidence 543 22221111111 12233678888888654 577888877643 3333322222223333
Q ss_pred CCCccceeEEEEEEeCCCe-----EEEEECCCCeEEe
Q 008939 401 DGTAETVMYRFGSVGQDTR-----LLLWDLEMDEIVV 432 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~-----i~lwd~~~~~~~~ 432 (548)
++ ++.+.||.|+. |..+|..+.+...
T Consensus 475 ~~------~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 475 NG------KIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred CC------EEEEECCccCCCccceEEEEcCCCCceeE
Confidence 55 68888887763 6678877766543
No 417
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.22 E-value=6.2 Score=37.49 Aligned_cols=114 Identities=12% Similarity=0.145 Sum_probs=80.5
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeec-CCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE-
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY-YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA- 377 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~- 377 (548)
..+.++.|+|+.+.|++......-.|+=..+|+++.++.-. ......+.|..++++.++--.++.+.++.+.....+.
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence 45999999999999988888877777777778888775421 2345678888899888888889999998876553221
Q ss_pred ------ecc--CC-CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 378 ------WGE--GH-NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 378 ------~~~--~h-~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
.+. .+ +.....++|+| .. ..|..+-+-.-+.|+.+.
T Consensus 166 ~~~~~i~L~~~~k~N~GfEGlA~d~-------~~------~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 166 AKVQKIPLGTTNKKNKGFEGLAWDP-------VD------HRLFVAKERNPIGIFEVT 210 (316)
T ss_pred ccceEEeccccCCCCcCceeeecCC-------CC------ceEEEEEccCCcEEEEEe
Confidence 111 23 56778899988 54 456666555556666554
No 418
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.14 E-value=9 Score=37.24 Aligned_cols=150 Identities=19% Similarity=0.175 Sum_probs=76.5
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+..+.-++++. +++++..-..+.-||-... . ..++ -+.-...|..|.|.|
T Consensus 144 ~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~---~--w~~~---------------------~r~~~~riq~~gf~~ 196 (302)
T PF14870_consen 144 SGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQT---T--WQPH---------------------NRNSSRRIQSMGFSP 196 (302)
T ss_dssp ---EEEEEE-TTS--EEEEETTSSEEEEE-TT-S---S---EEE---------------------E--SSS-EEEEEE-T
T ss_pred cceeEeEEECCCCc-EEEEECcccEEEEecCCCc---c--ceEE---------------------ccCccceehhceecC
Confidence 46788888899998 7777655444446664320 0 0000 000136799999999
Q ss_pred CCCEEEEEECCCeEEEEeCC-CCeEEEe----eeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEe---ccC
Q 008939 310 DGTYLATVGRDGYLRVFDYS-KEQLICG----GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW---GEG 381 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~-~~~~~~~----~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~---~~~ 381 (548)
++.+.+.+ ..|.|++=+.. ..+.-.. +....-.+..++|.++++..++|+.. . .+...+.++--+. ...
T Consensus 197 ~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~-l~~S~DgGktW~~~~~~~~ 273 (302)
T PF14870_consen 197 DGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-T-LLVSTDGGKTWQKDRVGEN 273 (302)
T ss_dssp TS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT---EEEESSTTSS-EE-GGGTT
T ss_pred CCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-c-EEEeCCCCccceECccccC
Confidence 98766644 88989888722 2221111 11122348999999998888777654 2 3344455543222 223
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 008939 382 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 423 (548)
Q Consensus 382 h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lw 423 (548)
-...++.|.|.+ +. .-...+++|.|.-|
T Consensus 274 ~~~n~~~i~f~~-------~~-------~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 274 VPSNLYRIVFVN-------PD-------KGFVLGQDGVLLRY 301 (302)
T ss_dssp SSS---EEEEEE-------TT-------EEEEE-STTEEEEE
T ss_pred CCCceEEEEEcC-------CC-------ceEEECCCcEEEEe
Confidence 455688899865 43 45566788888765
No 419
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.11 E-value=0.0091 Score=59.37 Aligned_cols=150 Identities=15% Similarity=0.199 Sum_probs=102.3
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 253 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg 253 (548)
..+..+.|.|. +..++++..+..|..||-..+ .... . .-.+...+++|.-+++..++.+...+
T Consensus 35 v~pi~~~w~~e---~~nlavaca~tiv~~YD~agq------~~le-~-------n~tg~aldm~wDkegdvlavlAek~~ 97 (615)
T KOG2247|consen 35 VGPIIHRWRPE---GHNLAVACANTIVIYYDKAGQ------VILE-L-------NPTGKALDMAWDKEGDVLAVLAEKTG 97 (615)
T ss_pred cccceeeEecC---CCceehhhhhhHHHhhhhhcc------eecc-c-------CCchhHhhhhhccccchhhhhhhcCC
Confidence 45677788888 444999999988888885542 1111 1 13567788999998886677788899
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL 333 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~ 333 (548)
.+++||+.++......+.. ...-.-+.|++....++.+...|.+.|++..+.+.
T Consensus 98 piylwd~n~eytqqLE~gg--------------------------~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ 151 (615)
T KOG2247|consen 98 PIYLWDVNSEYTQQLESGG--------------------------TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRR 151 (615)
T ss_pred CeeechhhhhhHHHHhccC--------------------------cchHHHHhhccCCccccccccccceEEEeccchhh
Confidence 9999999863211100000 01111267888888888888999999999987776
Q ss_pred EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEE
Q 008939 334 ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQV 367 (548)
Q Consensus 334 ~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~v 367 (548)
+...-.|...+.+++|.+.+. .+.++.|..+.+
T Consensus 152 iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v 184 (615)
T KOG2247|consen 152 IIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSV 184 (615)
T ss_pred hhhhcccccceeEEEecccce-eeecCcHHHHHH
Confidence 655544888999999998874 455555544433
No 420
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.92 E-value=8.4 Score=36.33 Aligned_cols=117 Identities=18% Similarity=0.076 Sum_probs=75.6
Q ss_pred eEEEEECCCCCEEEEEECCC--eEEEEeCCCCeEEEeeeecCC-ceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEe
Q 008939 302 INSIAFSTDGTYLATVGRDG--YLRVFDYSKEQLICGGKSYYG-ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 302 v~~~~~sp~g~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~ 378 (548)
-..+.|..++.++-+.+.-| .|+.+|+.+++.+....-... ---.++.. ++++....-.++...+||.++.+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 44678877888888887766 699999999987655432211 11233444 334555566789999999999998888
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
+. ....=+.++. || ..|+.......|.++|..+-+....+.
T Consensus 126 ~~-y~~EGWGLt~---------dg------~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 126 FP-YPGEGWGLTS---------DG------KRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EE--SSS--EEEE---------CS------SCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred Ee-cCCcceEEEc---------CC------CEEEEECCccceEEECCcccceEEEEE
Confidence 86 4455677875 55 234444446789999988877666554
No 421
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.81 E-value=0.16 Score=54.44 Aligned_cols=99 Identities=20% Similarity=0.357 Sum_probs=62.4
Q ss_pred eEEEEEccCCCCCC-----eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCC
Q 008939 152 AIFISDLNSQDKDP-----IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDG 226 (548)
Q Consensus 152 ~v~vwd~~~~~~~~-----i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 226 (548)
.+.||+++--..+. ++.+.--...+..+.|.|-..+..++.++..++.|++.......++ ++.
T Consensus 154 ~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~----l~r-------- 221 (1283)
T KOG1916|consen 154 ELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS----LFR-------- 221 (1283)
T ss_pred hhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHH----HHH--------
Confidence 67889876422111 2222222345677788877666778888999999998887664321 111
Q ss_pred cccCcceEEEE-----------EecCCCcEEEEEeCCCcEEEEEcCCCC
Q 008939 227 SVNNSRCTSVT-----------WVPGGDGAFVVGHADGNLYVYEKSKDG 264 (548)
Q Consensus 227 ~~~~~~v~~l~-----------~~p~~~~~l~s~~~dg~v~vwd~~~~~ 264 (548)
.|...+.+++ .+|||. .|+.++.||.+++|.+.-.+
T Consensus 222 -sHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g 268 (1283)
T KOG1916|consen 222 -SHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITG 268 (1283)
T ss_pred -hcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeec
Confidence 1233333322 688998 89999999999988876533
No 422
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.72 E-value=4 Score=43.59 Aligned_cols=121 Identities=15% Similarity=0.220 Sum_probs=77.0
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc-CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 343 ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 343 ~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
...-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|..+.|.. .+|| +.+++.|-.+.|.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWts-----t~d~------qsiLaVGf~~~v~ 99 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTS-----TPDG------QSILAVGFPHHVL 99 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeee-----cCCC------CEEEEEEcCcEEE
Confidence 44455556666665665566789999999887543322 3578899999965 2366 6899999999999
Q ss_pred EEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEe--ecCC-CCeeEEEEeCCeE
Q 008939 422 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH--RVHT-EPLSGLIFTQESV 498 (548)
Q Consensus 422 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~--~~h~-~~V~~l~fspd~l 498 (548)
++-...-. ... ..+.+.++..+ ..|+ .+|.+..|.+++.
T Consensus 100 l~~Q~R~d----y~~----------------------------------~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~ 141 (631)
T PF12234_consen 100 LYTQLRYD----YTN----------------------------------KGPSWAPIRKIDISSHTPHPIGDSIWLKDGT 141 (631)
T ss_pred EEEccchh----hhc----------------------------------CCcccceeEEEEeecCCCCCccceeEecCCe
Confidence 98643200 000 00111111111 2233 5799999999986
Q ss_pred EEEECCCeEEEEeC
Q 008939 499 LTVCREGHIKIWMR 512 (548)
Q Consensus 499 ~t~s~Dg~I~iW~~ 512 (548)
+..+....+.|++-
T Consensus 142 LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 142 LVVGSGNQLFVFDK 155 (631)
T ss_pred EEEEeCCEEEEECC
Confidence 66666788999884
No 423
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.59 E-value=10 Score=36.40 Aligned_cols=229 Identities=15% Similarity=0.093 Sum_probs=121.6
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc-cccceeeeeeeccCCcccCcceEEEEEecCCC---------
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD-VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD--------- 243 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~--------- 243 (548)
.+.+.++|+|. +..-++....+...+||.....+. ...+++-.+. .+.+.......+.+.|+....
T Consensus 23 ~N~WGia~~p~---~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP-~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 23 RNAWGLSYRPG---GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIP-APPPLAAEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred cccceeEecCC---CCEEEecCCcceEEeecCCcccccCCccceEEEec-CCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence 36789999997 544555555678889998731111 1112221111 111112345678888875432
Q ss_pred --cEEEEEeCCCcEEEEEcCCCCCC-CCCcccccccceeeeecCCCCCCCCeeEeeec-CCC-eEEEEECC--CCCEEEE
Q 008939 244 --GAFVVGHADGNLYVYEKSKDGAG-DSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGS-INSIAFST--DGTYLAT 316 (548)
Q Consensus 244 --~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~-v~~~~~sp--~g~~l~s 316 (548)
..|+.+++||+|.-|....+... ... +..++.. .+. -..+++-. .+.+|+.
T Consensus 99 ~~a~Fif~tEdGTisaW~p~v~~t~~~~~----------------------~~~~d~s~~gavYkGLAi~~~~~~~~LYa 156 (336)
T TIGR03118 99 GPSRFLFVTEDGTLSGWAPALGTTRMTRA----------------------EIVVDASQQGNVYKGLAVGPTGGGDYLYA 156 (336)
T ss_pred cceeEEEEeCCceEEeecCcCCccccccc----------------------EEEEccCCCcceeeeeEEeecCCCceEEE
Confidence 14678889999999985432110 000 0001000 122 23455553 3455544
Q ss_pred E-ECCCeEEEEeCCCCeEEEe--e-----eecCCc-----------eEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 317 V-GRDGYLRVFDYSKEQLICG--G-----KSYYGA-----------LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 317 ~-~~dg~v~vwd~~~~~~~~~--~-----~~~~~~-----------v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
+ ...++|.|||-.-.++... + .....+ |+-..-.++.+.=+.|-.-|.|-+||+. ++.++
T Consensus 157 adF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~ 235 (336)
T TIGR03118 157 ANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLR 235 (336)
T ss_pred eccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEE
Confidence 4 4678999998754432111 0 111111 1111112222222334455789999986 77777
Q ss_pred ecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 378 WGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 378 ~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
++. +.-..-+.|+..| ..-+.....+|+----||+|..+|..+++.+-.+..
T Consensus 236 r~as~g~LNaPWG~a~AP-------a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 236 RVASSGRLNAPWGLAIAP-------ESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred EeccCCcccCCceeeeCh-------hhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 764 2334456777766 211111225677666799999999999998877665
No 424
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.52 E-value=0.48 Score=30.66 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=26.3
Q ss_pred CCeEEEEECCC-C--CEEEEEECCCeEEEEeCCC
Q 008939 300 GSINSIAFSTD-G--TYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 300 ~~v~~~~~sp~-g--~~l~s~~~dg~v~vwd~~~ 330 (548)
++|.++.|+|+ + .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5888888889999999985
No 425
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.43 E-value=8.6 Score=35.25 Aligned_cols=102 Identities=10% Similarity=0.133 Sum_probs=67.9
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee----cCCCeEEEEE
Q 008939 232 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI----CQGSINSIAF 307 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~ 307 (548)
--+.++|+.+.+.+.+.-+.+-.|.-||.+..+..... ...+..++. ..-..-.++.
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn-------------------r~~i~dlrk~~~~e~~~PDGm~I 219 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN-------------------RKVIFDLRKSQPFESLEPDGMTI 219 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccC-------------------cceeEEeccCCCcCCCCCCcceE
Confidence 34688999887745555666777877886542211111 111111111 0112234566
Q ss_pred CCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC
Q 008939 308 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 308 sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd 352 (548)
..+|++.+++...++|..+|..+|+.+..++-....|+|++|--.
T Consensus 220 D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 220 DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 778999999999999999999999999998888889999999643
No 426
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.17 E-value=0.51 Score=30.54 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=26.0
Q ss_pred CceEEEEEccCC---CEEEEEeCCCeEEEEECCC
Q 008939 342 GALLCCAWSMDG---KYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 342 ~~v~~l~~spdg---~~l~sgs~dg~I~vwd~~~ 372 (548)
+.|.++.|+|+. .+|+..-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888888889999999995
No 427
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.05 E-value=13 Score=36.26 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=52.2
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEEC-CCceeEEe
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM-EDRKVVAW 378 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~-~~~~~~~~ 378 (548)
+.+..+..++||++++++..-..+.-||--...-...-+.-...|..+.|.|++.+.+++ ..+.|++=+. ...+.-..
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~ 223 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE 223 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE--
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccc
Confidence 778889999999999888766666778764322222223345789999999998876655 8889988872 22222111
Q ss_pred ----ccCCCCCeEEEEEec
Q 008939 379 ----GEGHNSWVSGVAFDS 393 (548)
Q Consensus 379 ----~~~h~~~V~~v~~~p 393 (548)
+..-.-.+..++|.+
T Consensus 224 ~~~~~~~~~~~~ld~a~~~ 242 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLAYRP 242 (302)
T ss_dssp -B-TTSS--S-EEEEEESS
T ss_pred ccCCcccCceeeEEEEecC
Confidence 111223478899987
No 428
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.86 E-value=0.072 Score=53.26 Aligned_cols=152 Identities=17% Similarity=0.223 Sum_probs=105.3
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
-...-...|-|++.+ ++.++.+..|..||-..+....... .+....++|..
T Consensus 34 lv~pi~~~w~~e~~n-lavaca~tiv~~YD~agq~~le~n~----------------------------tg~aldm~wDk 84 (615)
T KOG2247|consen 34 LVGPIIHRWRPEGHN-LAVACANTIVIYYDKAGQVILELNP----------------------------TGKALDMAWDK 84 (615)
T ss_pred ccccceeeEecCCCc-eehhhhhhHHHhhhhhcceecccCC----------------------------chhHhhhhhcc
Confidence 344456778999884 8888888899999865421111111 14556788888
Q ss_pred CCCEEE-EEECCCeEEEEeCCCCeE--EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCe
Q 008939 310 DGTYLA-TVGRDGYLRVFDYSKEQL--ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 386 (548)
Q Consensus 310 ~g~~l~-s~~~dg~v~vwd~~~~~~--~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V 386 (548)
++..++ .+-..+.+.+||+.+... +..--.|.... +.|++-...++.+-..+.+.||+..+.+.+...-.|...+
T Consensus 85 egdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRg 162 (615)
T KOG2247|consen 85 EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRG 162 (615)
T ss_pred ccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccce
Confidence 776544 455678899999975432 11111122233 7899999999999999999999998877766665599999
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+++++.+ .+ +.+.++.|..+.+-...
T Consensus 163 tq~av~l-------Ed-------~vil~dcd~~L~v~~qe 188 (615)
T KOG2247|consen 163 TQIAVTL-------ED-------YVILCDCDNTLSVTTQE 188 (615)
T ss_pred eEEEecc-------cc-------eeeecCcHHHHHHhhhc
Confidence 9999998 66 67777777766655443
No 429
>PHA02790 Kelch-like protein; Provisional
Probab=91.77 E-value=7.6 Score=40.77 Aligned_cols=100 Identities=9% Similarity=-0.012 Sum_probs=53.6
Q ss_pred CCCEEEEEECCC---eEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCcee--EEeccCC
Q 008939 310 DGTYLATVGRDG---YLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV--VAWGEGH 382 (548)
Q Consensus 310 ~g~~l~s~~~dg---~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~--~~~~~~h 382 (548)
+++..+.|+.++ .+..||.++.+-... +...... ..+..-++++.+.|+ .+.+||.++.+- +..+...
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~--~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~ 436 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK--SCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYP 436 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc--ceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCC
Confidence 567777776543 467888876643221 1111111 122234666667664 577899877643 2333222
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCCe
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDE 429 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~~ 429 (548)
......+.+ +| ...+.||.+ ..+..||..+++
T Consensus 437 r~~~~~~v~---------~~------~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 437 RDNPELIIV---------DN------KLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ccccEEEEE---------CC------EEEEECCcCCCcccceEEEEECCCCe
Confidence 233333444 55 677777754 346677776654
No 430
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.54 E-value=13 Score=35.29 Aligned_cols=109 Identities=20% Similarity=0.133 Sum_probs=66.5
Q ss_pred CeEEEEECCCCCEEEEEE---CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEE-CCCceeE
Q 008939 301 SINSIAFSTDGTYLATVG---RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS-MEDRKVV 376 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~---~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd-~~~~~~~ 376 (548)
.+...+++++++.++... ....|.++...... ...+. ...+..-.|++++...+....+...+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~-~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV-RPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc-eeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999999887766 33445555543222 21122 23678889999988777766666767764 3333221
Q ss_pred -Eecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe---CCCeEEEEEC
Q 008939 377 -AWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG---QDTRLLLWDL 425 (548)
Q Consensus 377 -~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~---~Dg~i~lwd~ 425 (548)
..+. .-...|..+.++| || .+++... .++.|.+=-+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSp-------DG------~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSP-------DG------TRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred eEEecccccCCceEEEEECC-------CC------cEEEEEEecCCCCeEEEEEE
Confidence 1111 1122899999999 99 4544443 3566665544
No 431
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.43 E-value=5.1 Score=40.28 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=84.8
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
.+..+.+...|.+.-|.+... +..+..... . ..+++|.+|.|++|.+ .|++--.|..|.+++...+...
T Consensus 33 aNkqlfavrSggatgvvvkgp----ndDVpiSfd--m---~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~- 101 (657)
T KOG2377|consen 33 ANKQLFAVRSGGATGVVVKGP----NDDVPISFD--M---DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQ- 101 (657)
T ss_pred CcceEEEEecCCeeEEEEeCC----CCCCCceee--e---cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchh-
Confidence 345666677777777776642 122211111 1 2467999999999999 9999999999999997432110
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC-eEEEeeeecCCceEE
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLC 346 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~ 346 (548)
. ...+..+.....|.++.|+.+ ..+|.....| +-+|-.... +.+...+.|...|.-
T Consensus 102 l---------------------~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnW 158 (657)
T KOG2377|consen 102 L---------------------EYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNW 158 (657)
T ss_pred h---------------------HHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccE
Confidence 0 001111222356889999876 5667666555 566655432 223445667777888
Q ss_pred EEEccCCCEEEEE
Q 008939 347 CAWSMDGKYILTG 359 (548)
Q Consensus 347 l~~spdg~~l~sg 359 (548)
-.|.++-+.++-+
T Consensus 159 y~yc~et~v~LL~ 171 (657)
T KOG2377|consen 159 YMYCPETAVILLS 171 (657)
T ss_pred EEEccccceEeee
Confidence 8888887754433
No 432
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.10 E-value=28 Score=38.40 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=52.3
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccc---ceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQ---TQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
.-.|..|.++|+|. +|+..+..| |.|-.+...-.....+...+.. ..+.++. ...-..+...|..+.
T Consensus 84 ~f~v~~i~~n~~g~-~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~--------~~~~~~~~~~i~qv~ 153 (717)
T PF10168_consen 84 LFEVHQISLNPTGS-LLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDE--------RFFTSNSSLEIKQVR 153 (717)
T ss_pred ceeEEEEEECCCCC-EEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEech--------hhccCCCCceEEEEE
Confidence 34788999999999 666666655 4455543210000011100000 0000000 000012236788999
Q ss_pred ECCC---CCEEEEEECCCeEEEEeCCCC
Q 008939 307 FSTD---GTYLATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 307 ~sp~---g~~l~s~~~dg~v~vwd~~~~ 331 (548)
|+|. +..|++-+.|+.+|+||+...
T Consensus 154 WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 154 WHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 9995 578999999999999999643
No 433
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.73 E-value=27 Score=37.65 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=25.9
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK 262 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~ 262 (548)
...+-.+.|+.+.. |++-..||++++|++.-
T Consensus 83 ~~~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 83 HGELIGMGWSDDEE--LICVQKDGTVHVYGLLG 113 (829)
T ss_pred CCCeeeecccCCce--EEEEeccceEEEeecch
Confidence 44788999998875 78888999999999863
No 434
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.64 E-value=9.5 Score=40.89 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=69.7
Q ss_pred EEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEc--cCCCEEEEEeCCCeEEEEECC-----C---
Q 008939 304 SIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWS--MDGKYILTGGEDDLVQVWSME-----D--- 372 (548)
Q Consensus 304 ~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~s--pdg~~l~sgs~dg~I~vwd~~-----~--- 372 (548)
-+.-+.-++.-++-.....+.|||.+.+.+..... ...+.|.++.|. ||++.+++-+-.+.|.+|.-. .
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 33334444433333344579999999887654422 346789999985 688888888888999998542 1
Q ss_pred -ceeEEe--ccCCC-CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 373 -RKVVAW--GEGHN-SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 373 -~~~~~~--~~~h~-~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
..++.. +..|+ .+|....|.+ || .+++.+ ++++.|+|-.-.
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~-------~G------~LvV~s--GNqlfv~dk~~~ 158 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLK-------DG------TLVVGS--GNQLFVFDKWLD 158 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEec-------CC------eEEEEe--CCEEEEECCCcC
Confidence 122222 23444 5788999998 88 333333 478898875433
No 435
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.41 E-value=9.3 Score=39.07 Aligned_cols=152 Identities=16% Similarity=0.354 Sum_probs=89.1
Q ss_pred EEeCCCCCEEEEecCC--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCC----CCceEEEEEcCCcEEEEEeeecc
Q 008939 136 TNFDGKGTYIIFNVGD--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAK----DGHDLLIGLNSGDVYSVSLRQQL 209 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~----~~~~l~~g~~dg~I~iwdl~~~~ 209 (548)
+-.+.+..+|...++. .++--|++.+. .|.....+... .+.|.|.-+ ....-++|.++..|.-.|.+..
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGk--vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~- 547 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGK--VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRAR- 547 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccce--eeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEeccccc-
Confidence 3445566666665443 66666777644 66666655433 667777643 1234678889988888887652
Q ss_pred ccccccee--eeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 210 QDVGKKLV--GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 210 ~~~~~~~~--~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
+.++. ....+. .+....|..-...| ++++++..|.|++||-- +.+....+|.+.
T Consensus 548 ---gNKi~v~esKdY~-----tKn~Fss~~tTesG--yIa~as~kGDirLyDRi-g~rAKtalP~lG------------- 603 (776)
T COG5167 548 ---GNKIKVVESKDYK-----TKNKFSSGMTTESG--YIAAASRKGDIRLYDRI-GKRAKTALPGLG------------- 603 (776)
T ss_pred ---CCceeeeeehhcc-----ccccccccccccCc--eEEEecCCCceeeehhh-cchhhhcCcccc-------------
Confidence 12221 111111 12222333222233 89999999999999953 223333333322
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS 329 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~ 329 (548)
..|..+..+.+|+++++.+ ..+|.+-|+.
T Consensus 604 ------------~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 604 ------------DAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ------------cceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 6788899999998776554 3467777764
No 436
>PHA02790 Kelch-like protein; Provisional
Probab=90.31 E-value=9.4 Score=40.09 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=32.4
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEE--EeeeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCce
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLI--CGGKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRK 374 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~ 374 (548)
++++.+.| |.+.+||.++.+-. ..+....... +++ .-++++.++|+.+ ..|.+||.++.+
T Consensus 407 ~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 407 GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCEEEEEC---CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 45555555 35778998766432 2222111112 222 2367788888754 346667766554
No 437
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.01 E-value=4.8 Score=45.80 Aligned_cols=181 Identities=13% Similarity=0.126 Sum_probs=93.5
Q ss_pred eeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEE--------ecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 134 TNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHA--------FDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~--------~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
+.+.+-|.=.+.....++.+.+|++++.. ....+..-...|..|. |.|. -.+|++-..--+|.++-+
T Consensus 82 ~~mGiFpeI~RaWiTiDn~L~lWny~~~~--e~~~~d~~shtIl~V~LvkPkpgvFv~~---IqhlLvvaT~~ei~ilgV 156 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWITIDNNLFLWNYESDN--ELAEYDGLSHTILKVGLVKPKPGVFVPE---IQHLLVVATPVEIVILGV 156 (1311)
T ss_pred eeeccchhhcceEEEeCCeEEEEEcCCCC--ccccccchhhhheeeeeecCCCCcchhh---hheeEEecccceEEEEEE
Confidence 34445555455555666799999999843 3333332223333332 3333 334555555567777766
Q ss_pred eecccccccceeeeeeeccCCc--ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC-cccccccceeeee
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGS--VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS-FPVIKDQTQFSVA 282 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~ 282 (548)
.-......... ++.... .....|+|+....+|+ +|+ ++.||.|+-.-.......... +..+.....
T Consensus 157 ~~~~~~~~~~~-----f~~~~~i~~dg~~V~~I~~t~nGR-IF~-~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s---- 225 (1311)
T KOG1900|consen 157 SFDEFTGELSI-----FNTSFKISVDGVSVNCITYTENGR-IFF-AGRDGNLYELVYQAEDGWFGSRCRKICLTKS---- 225 (1311)
T ss_pred EeccccCcccc-----cccceeeecCCceEEEEEeccCCc-EEE-eecCCCEEEEEEeccCchhhcccccccCchh----
Confidence 54211111111 111111 1356788999777886 555 556665553333322111111 000000000
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.-.+.-.........+..+|..++....-..+.+-+..+.|++||+..
T Consensus 226 ~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 226 VLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred HHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 000000001111134568999999999888999999999999999975
No 438
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.92 E-value=2.2 Score=39.45 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=50.1
Q ss_pred ECCCCCEEEEEECCCeEEEEeCCCCeEEEee-------e-------ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008939 307 FSTDGTYLATVGRDGYLRVFDYSKEQLICGG-------K-------SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 307 ~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~-------~-------~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~ 372 (548)
+..++++|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+ +|..+.||.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3457889999999999999999988765332 1 2445688888888888777664 57788888765
Q ss_pred ce
Q 008939 373 RK 374 (548)
Q Consensus 373 ~~ 374 (548)
+.
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 43
No 439
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.90 E-value=18 Score=34.22 Aligned_cols=161 Identities=17% Similarity=0.104 Sum_probs=95.8
Q ss_pred ceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 232 RCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
..-.+.|..++. ++-+.+.-| .|+.+|+.++. .....+. +. .---..++...
T Consensus 46 FTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~-~~~~~~l---~~---------------------~~FgEGit~~~ 99 (264)
T PF05096_consen 46 FTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGK-VLQSVPL---PP---------------------RYFGEGITILG 99 (264)
T ss_dssp EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSS-EEEEEE----TT---------------------T--EEEEEEET
T ss_pred cCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCc-EEEEEEC---Cc---------------------cccceeEEEEC
Confidence 345777877776 667766666 68888887632 1110000 00 00111233332
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC-----CC
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH-----NS 384 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-----~~ 384 (548)
| ++....-.++...+||..+-+.+..+. +.+.=..++ .|++.|+.......|+++|.++.+.+..+.-. -.
T Consensus 100 d-~l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~ 175 (264)
T PF05096_consen 100 D-KLYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVS 175 (264)
T ss_dssp T-EEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred C-EEEEEEecCCeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECC
Confidence 2 333444478899999999988887765 334444555 56777777777789999999887766655422 23
Q ss_pred CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 385 WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 385 ~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.++-+.|- +| ...|=.=....|...|..+|+++..+..
T Consensus 176 ~LNELE~i--------~G------~IyANVW~td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 176 NLNELEYI--------NG------KIYANVWQTDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp -EEEEEEE--------TT------EEEEEETTSSEEEEEETTT-BEEEEEE-
T ss_pred CcEeEEEE--------cC------EEEEEeCCCCeEEEEeCCCCeEEEEEEh
Confidence 56667776 77 5666666778899999999998876654
No 440
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.84 E-value=1.1 Score=44.56 Aligned_cols=181 Identities=19% Similarity=0.278 Sum_probs=102.7
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceE-EEEEecCCC
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCT-SVTWVPGGD 243 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~p~~~ 243 (548)
.++.+......+..+-..|+ ++.|++-+. .++.++++.+...+ .+++..... .. ....|+ .+.....+.
T Consensus 212 ~i~~L~~~~~~v~qllL~Pd---g~~LYv~~g-~~~~v~~L~~r~l~-~rkl~~dsp---g~--~~~~Vte~l~lL~Gg~ 281 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTPD---GKTLYVRTG-SELVVALLDKRSLQ-IRKLVDDSP---GD--SRHQVTEQLYLLSGGF 281 (733)
T ss_pred hhhhcCCCccchHhhEECCC---CCEEEEecC-CeEEEEeecccccc-hhhhhhcCC---Cc--hHHHHHHHHHHHhCce
Confidence 34445445566777788888 666666555 67888888763222 122221100 00 011222 122223344
Q ss_pred cEEEEEeCCCcEEEE-EcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCe
Q 008939 244 GAFVVGHADGNLYVY-EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGY 322 (548)
Q Consensus 244 ~~l~s~~~dg~v~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~ 322 (548)
-|++++.||-|.-| |.+.++... + +.++.++....++..+.=..+.+-+++-+..|+
T Consensus 282 -SLLv~~~dG~vsQWFdvr~~~~p~--l-------------------~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~ 339 (733)
T COG4590 282 -SLLVVHEDGLVSQWFDVRRDGQPH--L-------------------NHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGT 339 (733)
T ss_pred -eEEEEcCCCceeeeeeeecCCCCc--c-------------------eeeeccccCcccceeeccccccceEEEEcCCCc
Confidence 68889999988876 666543311 1 112222222233443332334456778888899
Q ss_pred EEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec
Q 008939 323 LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 323 v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~ 379 (548)
+.++.....+.+..-.. ...+.-+++||.+.+|++- +.+.|+++.+++..+...+
T Consensus 340 L~~f~st~~~~lL~~~~-~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 340 LQSFYSTSEKLLLFERA-YQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPEISW 394 (733)
T ss_pred eeeeecccCcceehhhh-hcCcceeeeCcccchheee-cCCceEEEEecCCCCCccH
Confidence 98887655554433232 2356778999999988875 5678999999887654443
No 441
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.38 E-value=14 Score=30.89 Aligned_cols=112 Identities=15% Similarity=0.248 Sum_probs=63.9
Q ss_pred eeEEeCCCCCEEEEec-CCeEEEEEccCC------CCCCeEEEecCCCCceEEEecCCC--CCCceEEEEEcCCcEEEEE
Q 008939 134 TNTNFDGKGTYIIFNV-GDAIFISDLNSQ------DKDPIKSIHFSNSNPVCHAFDQDA--KDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~-~d~v~vwd~~~~------~~~~i~~~~~~~~~~~~~~~~p~~--~~~~~l~~g~~dg~I~iwd 204 (548)
+...|+.....|++++ .+.|.|.+.... ...++..+.+.. .+++++-.+-. .+...|++|+. ..|..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~-~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ-EITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC-ceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 3456777777676655 448999987643 234677777544 78887655532 22345555554 5888999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCC---CcEEEEEeCCCcEEEEEcC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG---DGAFVVGHADGNLYVYEKS 261 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~---~~~l~s~~~dg~v~vwd~~ 261 (548)
+... ..+. .++ -.+.|++|.+-.-+ ..++++| .+..|.-||.+
T Consensus 80 V~~N-----~d~F-----yke---~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~ 125 (136)
T PF14781_consen 80 VENN-----SDLF-----YKE---VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYE 125 (136)
T ss_pred cccC-----chhh-----hhh---CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCC
Confidence 9873 2221 111 24667777774322 2144444 44556666544
No 442
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.72 E-value=11 Score=38.48 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=74.3
Q ss_pred CCCeeEeeecCCCeEEEEECCCC--------CEEEEEECCCeEEEEeCCC-CeEEEe--eeec--CCceEEEEEccCCCE
Q 008939 289 SNPIARWHICQGSINSIAFSTDG--------TYLATVGRDGYLRVFDYSK-EQLICG--GKSY--YGALLCCAWSMDGKY 355 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g--------~~l~s~~~dg~v~vwd~~~-~~~~~~--~~~~--~~~v~~l~~spdg~~ 355 (548)
.+.+..|..|..- -+.|.|+. +.|+ |-.+..|.-.|.+- +..+.. .+.+ .....|..-..+| +
T Consensus 500 GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesG-y 575 (776)
T COG5167 500 GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESG-Y 575 (776)
T ss_pred ceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhccccccccccccccCc-e
Confidence 3557778877655 46677743 2344 44455566566653 322211 1111 1233344444444 8
Q ss_pred EEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 356 l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+|+++..|-|++||--..+...-+.+....|..|.... +| .++++.+ ...|.+-|++
T Consensus 576 Ia~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta-------~G------k~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 576 IAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTA-------NG------KHILATC-KNYLLLTDVP 632 (776)
T ss_pred EEEecCCCceeeehhhcchhhhcCcccccceeeeEeec-------CC------cEEEEee-cceEEEEecc
Confidence 99999999999999765555556677788899999988 88 4555444 3578888875
No 443
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.45 E-value=25 Score=38.69 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEeC
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFDY 328 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd~ 328 (548)
-.|..+.++|+|++|+..+..| |.|..+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 4688899999999999988765 444444
No 444
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.32 E-value=5.3 Score=36.92 Aligned_cols=71 Identities=14% Similarity=0.279 Sum_probs=51.2
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCceeEEec-------c-------CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE
Q 008939 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWG-------E-------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414 (548)
Q Consensus 349 ~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~-------~-------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~ 414 (548)
+..++++|++-+.+|.+++||+.+++.+..- . .....|..+..+. +| .-|++-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-------~G------~PiV~l 84 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-------NG------VPIVTL 84 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-------CC------CEEEEE
Confidence 4567889999999999999999988754322 1 2456778888877 77 344444
Q ss_pred eCCCeEEEEECCCCeEEee
Q 008939 415 GQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 415 ~~Dg~i~lwd~~~~~~~~~ 433 (548)
.+|....||...+.-+..
T Consensus 85 -sng~~y~y~~~L~~W~~v 102 (219)
T PF07569_consen 85 -SNGDSYSYSPDLGCWIRV 102 (219)
T ss_pred -eCCCEEEeccccceeEEe
Confidence 467889999887665543
No 445
>PRK10115 protease 2; Provisional
Probab=86.95 E-value=54 Score=36.21 Aligned_cols=68 Identities=7% Similarity=0.100 Sum_probs=43.1
Q ss_pred CceeEEeCCCCCEEEEecC---C---eEEEEEccCCCCCCe-EEEecCCCCceEEEecCCCCCCceEEEEEcC------C
Q 008939 132 SMTNTNFDGKGTYIIFNVG---D---AIFISDLNSQDKDPI-KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS------G 198 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~---d---~v~vwd~~~~~~~~i-~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d------g 198 (548)
.+..+.++|||++|+++.+ + .|++.|+.++. .+ ..+.. .. ..++|.++ +..|+....+ .
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~--~l~~~i~~--~~-~~~~w~~D---~~~~~y~~~~~~~~~~~ 199 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN--WYPELLDN--VE-PSFVWAND---SWTFYYVRKHPVTLLPY 199 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC--CCCccccC--cc-eEEEEeeC---CCEEEEEEecCCCCCCC
Confidence 3456788999999998543 2 68899998754 21 11111 11 45899888 5556555442 3
Q ss_pred cEEEEEeee
Q 008939 199 DVYSVSLRQ 207 (548)
Q Consensus 199 ~I~iwdl~~ 207 (548)
.|+.+++.+
T Consensus 200 ~v~~h~lgt 208 (686)
T PRK10115 200 QVWRHTIGT 208 (686)
T ss_pred EEEEEECCC
Confidence 577788776
No 446
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.84 E-value=34 Score=33.80 Aligned_cols=122 Identities=17% Similarity=0.279 Sum_probs=67.9
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCc------EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCe
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGN------LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI 302 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 302 (548)
.-+.+..|.+.|++. .+++-+.+|. ++.+++.............. ...+... ...++.. -.-..
T Consensus 18 ~~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~~~---~G~~~~~---~~~D~ 87 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILD---MIPLRDP---DGQPFPK---NGLDP 87 (326)
T ss_pred ccCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEecc---ceeccCC---CCCcCCc---CCCCh
Confidence 456788999997666 6777777777 77666654211111111000 0000000 0111100 01245
Q ss_pred EEEEECCCCCEEEEEECC------CeEEEEeCCCCeEEEee---------------eecCCceEEEEEccCCCEEEEEeC
Q 008939 303 NSIAFSTDGTYLATVGRD------GYLRVFDYSKEQLICGG---------------KSYYGALLCCAWSMDGKYILTGGE 361 (548)
Q Consensus 303 ~~~~~sp~g~~l~s~~~d------g~v~vwd~~~~~~~~~~---------------~~~~~~v~~l~~spdg~~l~sgs~ 361 (548)
.+|++.+++.++++--.+ -.|+.++.. ++.+..+ ......+-.++++|||+.|+++.+
T Consensus 88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 578886788777776666 678888876 5543332 113456889999999996666543
No 447
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.96 E-value=5.7 Score=35.14 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=28.7
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 384 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
..|.+++|+| -|-+.....+|+....++.|.||.-...
T Consensus 86 ~~vv~~aWSP-------~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSP-------SGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECC-------CCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 4789999999 4422333368999999999999987643
No 448
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.96 E-value=26 Score=31.65 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=49.3
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEee----eec-CCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc---
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGG----KSY-YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE--- 380 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~----~~~-~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~--- 380 (548)
.|++.|+.+....+++.-|.++-....+. .+- -..++.+.|- ||...|=--.+..|...|.++|+.+.++.
T Consensus 138 ~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~ 216 (262)
T COG3823 138 SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSG 216 (262)
T ss_pred cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccC
Confidence 35555666655567777776643332222 110 1223445554 66666655566677777888887776553
Q ss_pred ---------CCCCCeEEEEEec
Q 008939 381 ---------GHNSWVSGVAFDS 393 (548)
Q Consensus 381 ---------~h~~~V~~v~~~p 393 (548)
.|..-.+.+++.|
T Consensus 217 L~~~~~~~~~~~nvlNGIA~~~ 238 (262)
T COG3823 217 LLKELNLDKSNDNVLNGIAHDP 238 (262)
T ss_pred CchhcCccccccccccceeecC
Confidence 2455678899988
No 449
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=85.63 E-value=66 Score=35.96 Aligned_cols=217 Identities=13% Similarity=0.072 Sum_probs=114.7
Q ss_pred CEEEEecCCeEEEEEccC-CCCCCeE-----EEecCCCCceEEEecCCCCCCceEEEEEcC---CcEEEEEeeeccc---
Q 008939 143 TYIIFNVGDAIFISDLNS-QDKDPIK-----SIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---GDVYSVSLRQQLQ--- 210 (548)
Q Consensus 143 ~~l~~~~~d~v~vwd~~~-~~~~~i~-----~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---g~I~iwdl~~~~~--- 210 (548)
..++......+++|=.+. .+...+. .+......++..++.+... +..++++..+ +.|++|.+.-.-.
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~-g~~ili~t~s~~s~~l~~yrv~I~W~~~~ 142 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDN-GKSILIATYSSLSKQLRFYRVQIDWNAKP 142 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCC-CCEEEEEEccccCCceEEEEEEEeccCcC
Confidence 345566666777776632 2211221 2223455667777774433 4445555444 7899887654211
Q ss_pred ---cccc-ceeeeeeeccC---C-----------cccCcceEEEEEec----C--CCcEEEEEeC----CCcEEEEEcCC
Q 008939 211 ---DVGK-KLVGAHHYNKD---G-----------SVNNSRCTSVTWVP----G--GDGAFVVGHA----DGNLYVYEKSK 262 (548)
Q Consensus 211 ---~~~~-~~~~~~~~~~~---~-----------~~~~~~v~~l~~~p----~--~~~~l~s~~~----dg~v~vwd~~~ 262 (548)
+... +.....+.... . ......++.+.|.+ . ...++++... ...|+-|.++.
T Consensus 143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 1100 11111111000 0 01234788888876 2 2225555432 34699999986
Q ss_pred CCCCC-CCcccccccceeeeecCCCCCCCCeeEeeec-----CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe
Q 008939 263 DGAGD-SSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-----QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG 336 (548)
Q Consensus 263 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~ 336 (548)
..... ..++....... ......+...|+.. ...|.+++...-+.+++....||+|.++|-.+.+.+..
T Consensus 223 ~~~~lh~~F~ql~s~~~------~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~ 296 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKN------SSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNE 296 (753)
T ss_pred cCcccchhhhhcCCCCc------CCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcc
Confidence 44221 11111110000 00112223333332 36788888777778999999999999999887654433
Q ss_pred e----ee---------------cCCceEEEEEccCCCEEEEEeCCCeEE
Q 008939 337 G----KS---------------YYGALLCCAWSMDGKYILTGGEDDLVQ 366 (548)
Q Consensus 337 ~----~~---------------~~~~v~~l~~spdg~~l~sgs~dg~I~ 366 (548)
. .. ....+..++|||.+-.++.-..++.+.
T Consensus 297 ~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 297 TRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred cccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 2 10 111334578999998888888888866
No 450
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=85.48 E-value=46 Score=34.03 Aligned_cols=157 Identities=12% Similarity=0.055 Sum_probs=90.7
Q ss_pred CCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec---C-CCcEEEEEeCCCcEEEEEcCC
Q 008939 187 DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP---G-GDGAFVVGHADGNLYVYEKSK 262 (548)
Q Consensus 187 ~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p---~-~~~~l~s~~~dg~v~vwd~~~ 262 (548)
+...|++|+.+|.++||+......+....+.. .. -+.+|..|..-. . ..+.||+=+ -..+.||.+..
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~-------l~~PILqv~~G~F~s~~~~~~LaVLh-P~kl~vY~v~~ 106 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQ-------LKDPILQVECGKFVSGSEDLQLAVLH-PRKLSVYSVSL 106 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-Ee-------cCCcEEEEEeccccCCCCcceEEEec-CCEEEEEEEEe
Confidence 35689999999999999985432222222222 22 356777776643 2 222455544 36788888743
Q ss_pred CCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC--CCeEEEEECC----C-CCEEEEEECCCeEEEEeCCCCeEEE
Q 008939 263 DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ--GSINSIAFST----D-GTYLATVGRDGYLRVFDYSKEQLIC 335 (548)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~sp----~-g~~l~s~~~dg~v~vwd~~~~~~~~ 335 (548)
..... ....+ ..+.....|. .....++.-| . ..+|++-+.||.+.+|+-+.-...+
T Consensus 107 ~~g~~------~~g~~-----------~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~ 169 (418)
T PF14727_consen 107 VDGTV------EHGNQ-----------YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSR 169 (418)
T ss_pred cCCCc------ccCcE-----------EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEE
Confidence 21110 00000 0111222221 2233333322 2 3578889999999999987554444
Q ss_pred eeeecCCceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 008939 336 GGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM 370 (548)
Q Consensus 336 ~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~ 370 (548)
.+.. .--.-.+.|.+.-..+++++.+..|..|..
T Consensus 170 ~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 170 FLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred EcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 4433 222335788888889999999999999875
No 451
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.48 E-value=30 Score=35.02 Aligned_cols=119 Identities=14% Similarity=0.202 Sum_probs=74.8
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE----EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC-c
Q 008939 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL----ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED-R 373 (548)
Q Consensus 299 ~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~----~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~-~ 373 (548)
+++|.++.||+|.+.||+--.|.+|.+++..-.+. ..+.+.....|....|+.+-+ +|.-.. .-+.+|-+.. .
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~~-~G~e~y~v~pek 143 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFITD-QGIEFYQVLPEK 143 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEec-CCeEEEEEchhh
Confidence 48999999999999999999999999999843322 222333445688999987744 444433 3355554432 2
Q ss_pred eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 374 KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 374 ~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
+.+...+.|...|.=-.|++ +- ..-+|+++-..+.+.=+-++++..
T Consensus 144 rslRlVks~~~nvnWy~yc~-------et----~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 144 RSLRLVKSHNLNVNWYMYCP-------ET----AVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred hhhhhhhhcccCccEEEEcc-------cc----ceEeeeccccccccccEEEeecee
Confidence 33444556777777777877 44 112334443555555555555543
No 452
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.46 E-value=23 Score=32.28 Aligned_cols=56 Identities=25% Similarity=0.422 Sum_probs=40.3
Q ss_pred CEEEEEECCCeEEEEeCC--CCeEEEeeeecCCceEEEEEccCCCEEEEEeCC------CeEEEE
Q 008939 312 TYLATVGRDGYLRVFDYS--KEQLICGGKSYYGALLCCAWSMDGKYILTGGED------DLVQVW 368 (548)
Q Consensus 312 ~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d------g~I~vw 368 (548)
..|+.+.....|.+|++. ..+++..+..- +.|..+.++..|++|++--++ ..+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 445444667789999998 33456666644 789999999999999985432 256665
No 453
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.42 E-value=41 Score=33.46 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=18.4
Q ss_pred eEEEEeCCCCeEE--EeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 322 YLRVFDYSKEQLI--CGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 322 ~v~vwd~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
.+.+||.++.+-. ..+.. ..-...+..-++++++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~--~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQ--GLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCC--CceeeEEEEcCCEEEEEeccC
Confidence 4567887655321 11111 111122334466777777754
No 454
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.34 E-value=9.9 Score=40.71 Aligned_cols=38 Identities=32% Similarity=0.428 Sum_probs=28.4
Q ss_pred CCeEEEEECC----CCCEEEEEECCCeEEEEeCCCCeEEEee
Q 008939 300 GSINSIAFST----DGTYLATVGRDGYLRVFDYSKEQLICGG 337 (548)
Q Consensus 300 ~~v~~~~~sp----~g~~l~s~~~dg~v~vwd~~~~~~~~~~ 337 (548)
..+..++++. +..+|++.+.|+.||+||+.+++++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4455566665 6789999999999999999999996654
No 455
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.04 E-value=71 Score=35.83 Aligned_cols=130 Identities=12% Similarity=0.123 Sum_probs=78.7
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC-CCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG-DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
...+..+++|+|.....||+-...|+..||++....+. ...+.......... ..+.++ ......+.|
T Consensus 144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi-----~~d~~e-------~s~w~rI~W 211 (765)
T PF10214_consen 144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI-----IFDPEE-------LSNWKRILW 211 (765)
T ss_pred CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc-----cCCCcc-------cCcceeeEe
Confidence 35678899999988779999999999999999221111 01111100000000 000011 144567889
Q ss_pred CCCCCEEEEEECCCeEEEEeCCCCeEEE--eeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCC
Q 008939 308 STDGTYLATVGRDGYLRVFDYSKEQLIC--GGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMED 372 (548)
Q Consensus 308 sp~g~~l~s~~~dg~v~vwd~~~~~~~~--~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~ 372 (548)
.++-+.|++++. ..+.++|+++..... ........|..+.-+|+.. +++.-. ...|...++..
T Consensus 212 ~~~~~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 212 VSDSNRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred cCCCCEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 888888888764 578999998775422 1223456798998888722 222222 25777778776
No 456
>PLN02153 epithiospecifier protein
Probab=84.62 E-value=45 Score=33.14 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=33.0
Q ss_pred CCCEEEEEECC-----------CeEEEEeCCCCeEEEe--ee---ecCCceEEEEEccCCCEEEEEeCC-----------
Q 008939 310 DGTYLATVGRD-----------GYLRVFDYSKEQLICG--GK---SYYGALLCCAWSMDGKYILTGGED----------- 362 (548)
Q Consensus 310 ~g~~l~s~~~d-----------g~v~vwd~~~~~~~~~--~~---~~~~~v~~l~~spdg~~l~sgs~d----------- 362 (548)
++++++.|+.+ ..|.+||..+.+-... .. ...... +++ .-++++++.|+.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~-~~~-~~~~~iyv~GG~~~~~~~gG~~~~ 214 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA-GFA-VVQGKIWVVYGFATSILPGGKSDY 214 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc-eEE-EECCeEEEEeccccccccCCccce
Confidence 45666666643 2477888876643221 10 001111 222 2356666665532
Q ss_pred --CeEEEEECCCcee
Q 008939 363 --DLVQVWSMEDRKV 375 (548)
Q Consensus 363 --g~I~vwd~~~~~~ 375 (548)
..|.+||+.+.+-
T Consensus 215 ~~~~v~~yd~~~~~W 229 (341)
T PLN02153 215 ESNAVQFFDPASGKW 229 (341)
T ss_pred ecCceEEEEcCCCcE
Confidence 4588889887643
No 457
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=84.34 E-value=52 Score=34.54 Aligned_cols=81 Identities=10% Similarity=0.043 Sum_probs=44.0
Q ss_pred EEEEECCCCCEEEEEEC-------------CCeEEEEeCCCCeEEEeeee--cC-------------------------C
Q 008939 303 NSIAFSTDGTYLATVGR-------------DGYLRVFDYSKEQLICGGKS--YY-------------------------G 342 (548)
Q Consensus 303 ~~~~~sp~g~~l~s~~~-------------dg~v~vwd~~~~~~~~~~~~--~~-------------------------~ 342 (548)
+.+.+-|+|++|+.+.. .-.|..+| .+|+.+..+.. |- -
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~ 271 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL 271 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence 35667788888887761 12355555 66666544221 10 1
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCeEEEEECCCceeEEeccCCCC
Q 008939 343 ALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS 384 (548)
Q Consensus 343 ~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~ 384 (548)
-++++.+.+ ++.+|+++-.-..|...|.++++....+-.|..
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~ 314 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGG 314 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCC
Confidence 378899998 555555554455899999888888777765543
No 458
>PLN02153 epithiospecifier protein
Probab=84.12 E-value=47 Score=32.98 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=27.5
Q ss_pred CeEEEEeCCCCeEEEeee-e--cCC-ceEEEEEccCCCEEEEEeCC--------------CeEEEEECCCce
Q 008939 321 GYLRVFDYSKEQLICGGK-S--YYG-ALLCCAWSMDGKYILTGGED--------------DLVQVWSMEDRK 374 (548)
Q Consensus 321 g~v~vwd~~~~~~~~~~~-~--~~~-~v~~l~~spdg~~l~sgs~d--------------g~I~vwd~~~~~ 374 (548)
..|.+||+.+.+-...-. + ... ...++ ...++++++.|+.. ..|..+|+++.+
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 358889988765332111 0 011 11122 22356777777752 256777876654
No 459
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.58 E-value=52 Score=33.10 Aligned_cols=113 Identities=16% Similarity=0.056 Sum_probs=67.1
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecC-CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 388 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~ 388 (548)
+|+ |+.++.++.+..+|.++++++....... ..+..-..-.++ .+..++.++.+.-.|-.+++.+-....-.. +..
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~ 187 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP-LSL 187 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc-ccc
Confidence 665 7778889999999999999988876554 112222223344 344444788999989888877554332111 110
Q ss_pred EE-EecCCCCCCCCCCccceeEEEEEEeC--CCeEEEEECCCCeEEeeeec
Q 008939 389 VA-FDSYWSQPNSDGTAETVMYRFGSVGQ--DTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 389 v~-~~p~~~~~~~dg~~~~~~~~l~s~~~--Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.. ..| -..++ .+..+.. ++.+.-.|..+|......+.
T Consensus 188 ~~~~~~----~~~~~-------~vy~~~~~~~~~~~a~~~~~G~~~w~~~~ 227 (370)
T COG1520 188 SIYGSP----AIASG-------TVYVGSDGYDGILYALNAEDGTLKWSQKV 227 (370)
T ss_pred ccccCc----eeecc-------eEEEecCCCcceEEEEEccCCcEeeeeee
Confidence 00 000 00133 3444444 66788888888888777543
No 460
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=83.58 E-value=1.1e+02 Score=36.70 Aligned_cols=64 Identities=11% Similarity=0.237 Sum_probs=41.2
Q ss_pred CCCeeEEEEeCC-eEEEEECCCeEEEEeCCCCCcc--ccCCCCcEEEecCCCC-ceEeeecccccccC
Q 008939 485 TEPLSGLIFTQE-SVLTVCREGHIKIWMRPGVAES--QSSSSETVLSTSSKDK-PLLSSKVVTSSYRQ 548 (548)
Q Consensus 485 ~~~V~~l~fspd-~l~t~s~Dg~I~iW~~~~~~~~--~~~~~~~v~~~s~d~~-~l~s~~~~g~~~~~ 548 (548)
...|+.++.-.+ .+++....|.|....-++.... ..+....|..++-|.+ .|..-+..|.+|++
T Consensus 702 ~~~i~a~Avv~~~~fvald~qg~lt~h~k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVALDDQGDLTAHQKPGRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRL 769 (1774)
T ss_pred cCcceeEEEEcCCceEEeccCCccccccCCCCCccCCCCCCCcchhheeeccccceeEecCCCceeec
Confidence 456888887665 5999999999999984443222 2233455656665554 35555566777764
No 461
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.49 E-value=53 Score=33.07 Aligned_cols=112 Identities=16% Similarity=0.091 Sum_probs=71.3
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecC--CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCC-Ce
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYY--GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS-WV 386 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~-~V 386 (548)
++ .++.+..||.|.-+|.++++.+.....-. ..+.+-.+..+|+ |+.++.++.+..+|.++++.+-....... .+
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 44 34555788888888998888664433221 2233333333776 77888899999999988988777665541 11
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
..-..-. ++ .+...+.|+.+...|..+++.+...+..
T Consensus 146 ~~~~v~~-------~~-------~v~~~s~~g~~~al~~~tG~~~W~~~~~ 182 (370)
T COG1520 146 ASPPVVG-------DG-------TVYVGTDDGHLYALNADTGTLKWTYETP 182 (370)
T ss_pred ecCcEEc-------Cc-------EEEEecCCCeEEEEEccCCcEEEEEecC
Confidence 1111111 44 4555557899999999999988876653
No 462
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=82.52 E-value=58 Score=32.88 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=18.0
Q ss_pred EEEEeCCCCeEE--EeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 323 LRVFDYSKEQLI--CGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 323 v~vwd~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
+.+||+++.+-. ..+.. ..-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~--~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQ--GLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCC--CccceEEEEeCCEEEEEcCCC
Confidence 457888765432 11111 111122333456777777753
No 463
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=82.34 E-value=53 Score=32.29 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=13.3
Q ss_pred cCCCcEEEEEeCCCc----EEEEEcCC
Q 008939 240 PGGDGAFVVGHADGN----LYVYEKSK 262 (548)
Q Consensus 240 p~~~~~l~s~~~dg~----v~vwd~~~ 262 (548)
.++. +++.|+.++. +.+||..+
T Consensus 170 ~~~~-iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 170 LQNE-LYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred ECCE-EEEEcCCCCccccceEEEecCC
Confidence 3455 7777776542 45677664
No 464
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.92 E-value=47 Score=38.29 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=26.8
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
+..+..++|+|. ..++++++.+|.|+++-...
T Consensus 35 ~~~~~~~afD~~---q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 35 PSTPSALAFDPT---QGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCcceeeccc---cceEEEEEecccEEEecccc
Confidence 457788899998 88999999999999986543
No 465
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=81.66 E-value=30 Score=28.94 Aligned_cols=117 Identities=14% Similarity=0.088 Sum_probs=73.1
Q ss_pred EEECCCCCEEEEEECCCeEEEEeCCCCe--------EEEeeeecCCceEEEEEcc-----CCCEEEEEeCCCeEEEEECC
Q 008939 305 IAFSTDGTYLATVGRDGYLRVFDYSKEQ--------LICGGKSYYGALLCCAWSM-----DGKYILTGGEDDLVQVWSME 371 (548)
Q Consensus 305 ~~~sp~g~~l~s~~~dg~v~vwd~~~~~--------~~~~~~~~~~~v~~l~~sp-----dg~~l~sgs~dg~I~vwd~~ 371 (548)
-.|.....-|+.++.-|.|.|++..... .+..+. -...|++++-.+ +...|+.|+ ...|..||++
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 3455555678888888999999876432 233333 345677776443 234677775 5689999998
Q ss_pred CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 372 DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 372 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
+..-+..- .-.+.|.++.+-..-.. + .-++..+.+..|.-||..-.+...++
T Consensus 82 ~N~d~Fyk-e~~DGvn~i~~g~~~~~---~-------~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFYK-EVPDGVNAIVIGKLGDI---P-------SPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhhh-hCccceeEEEEEecCCC---C-------CcEEEECceEEEEEeCCCCcEEEEEe
Confidence 77654332 24467888887431000 1 23555666788888887766665543
No 466
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=81.64 E-value=67 Score=33.01 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=25.0
Q ss_pred CceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008939 342 GALLCCAWSMDGKYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 342 ~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~ 372 (548)
..|..++..+..+.|++...++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488899988889999999999999999975
No 467
>PRK10115 protease 2; Provisional
Probab=81.41 E-value=92 Score=34.43 Aligned_cols=195 Identities=9% Similarity=0.001 Sum_probs=92.7
Q ss_pred ceEEEecCCCCCCceEEEEEcC-C----cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 176 PVCHAFDQDAKDGHDLLIGLNS-G----DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 176 ~~~~~~~p~~~~~~~l~~g~~d-g----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
+..+.++|+ +++|+.+... | +|++.|+.+ +..+.... .... ..++|.++++.++++..
T Consensus 129 l~~~~~Spd---g~~la~~~d~~G~E~~~l~v~d~~t-----g~~l~~~i--------~~~~-~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 129 LGGMAITPD---NTIMALAEDFLSRRQYGIRFRNLET-----GNWYPELL--------DNVE-PSFVWANDSWTFYYVRK 191 (686)
T ss_pred EeEEEECCC---CCEEEEEecCCCcEEEEEEEEECCC-----CCCCCccc--------cCcc-eEEEEeeCCCEEEEEEe
Confidence 345567777 6677766544 3 377777754 22111100 1111 46999999985555554
Q ss_pred CC-----CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeE-EEEECCCCCEEEEEEC---CC
Q 008939 251 AD-----GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSIN-SIAFSTDGTYLATVGR---DG 321 (548)
Q Consensus 251 ~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~g~~l~s~~~---dg 321 (548)
.+ ..|+.+++.+... .....+........ .+..+.++++++..+. ++
T Consensus 192 ~~~~~~~~~v~~h~lgt~~~------------------------~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~ 247 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPAS------------------------QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTS 247 (686)
T ss_pred cCCCCCCCEEEEEECCCChh------------------------HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccc
Confidence 33 3566677665211 11112222112222 2333447777665443 45
Q ss_pred eEEEEeCC--CCeEEEeeeecCCceEEEEEccCCCEEEEEeC---CCeEEEEECCCceeEEeccCC-C-CCeEEEEEecC
Q 008939 322 YLRVFDYS--KEQLICGGKSYYGALLCCAWSMDGKYILTGGE---DDLVQVWSMEDRKVVAWGEGH-N-SWVSGVAFDSY 394 (548)
Q Consensus 322 ~v~vwd~~--~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~---dg~I~vwd~~~~~~~~~~~~h-~-~~V~~v~~~p~ 394 (548)
.+.+++.. .++....+..-.+....+. +..+.+++.... ...|...++.+......+..+ . ..|..+.+..
T Consensus 248 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~- 325 (686)
T PRK10115 248 EVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT- 325 (686)
T ss_pred cEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-
Confidence 78888842 3332222222222222222 223333332221 223444455521112233334 3 3677777764
Q ss_pred CCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 395 WSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 395 ~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+ .++++...++.-+++-+.
T Consensus 326 ------~-------~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 326 ------D-------WLVVEERQRGLTSLRQIN 344 (686)
T ss_pred ------C-------EEEEEEEeCCEEEEEEEc
Confidence 3 477777778776665443
No 468
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.12 E-value=7.8 Score=24.52 Aligned_cols=31 Identities=23% Similarity=0.167 Sum_probs=23.8
Q ss_pred cCCCEEEEEe-CCCeEEEEECCCceeEEeccC
Q 008939 351 MDGKYILTGG-EDDLVQVWSMEDRKVVAWGEG 381 (548)
Q Consensus 351 pdg~~l~sgs-~dg~I~vwd~~~~~~~~~~~~ 381 (548)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5777666654 578999999998888777664
No 469
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.01 E-value=6.9 Score=41.92 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=44.2
Q ss_pred CCCCEEEEEECCCeEEEEeCCC----CeEEEe--eee--------------------cCCceEEEEEcc----CCCEEEE
Q 008939 309 TDGTYLATVGRDGYLRVFDYSK----EQLICG--GKS--------------------YYGALLCCAWSM----DGKYILT 358 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~----~~~~~~--~~~--------------------~~~~v~~l~~sp----dg~~l~s 358 (548)
++...|+.+..||.+....... +..... +.. ....+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4566788888898888877654 111111 000 113455666666 6679999
Q ss_pred EeCCCeEEEEECCCceeEEec
Q 008939 359 GGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 359 gs~dg~I~vwd~~~~~~~~~~ 379 (548)
-+.|+.+|+||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986654
No 470
>PRK13684 Ycf48-like protein; Provisional
Probab=80.51 E-value=64 Score=32.01 Aligned_cols=109 Identities=18% Similarity=0.095 Sum_probs=63.4
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee----cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCcee
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS----YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV 375 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~----~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~ 375 (548)
..++++.+.++++.++++ ..|.+++=....++.-..... ....+..+.+.+++..++++ .+|.|. ...+.++.
T Consensus 215 ~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~t 291 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKT 291 (334)
T ss_pred ccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCC
Confidence 578899999998876665 567665433333332111111 12357888999988765554 566554 34444443
Q ss_pred EEecc---CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 376 VAWGE---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 376 ~~~~~---~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
-.... .-......+.|.. ++ .....+..|.|.-|+-
T Consensus 292 W~~~~~~~~~~~~~~~~~~~~-------~~-------~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 292 WEKDPVGEEVPSNFYKIVFLD-------PE-------KGFVLGQRGVLLRYVG 330 (334)
T ss_pred CeECCcCCCCCcceEEEEEeC-------CC-------ceEEECCCceEEEecC
Confidence 22222 2224577777764 44 4556777888887763
No 471
>PRK13684 Ycf48-like protein; Provisional
Probab=79.77 E-value=67 Score=31.84 Aligned_cols=105 Identities=15% Similarity=0.188 Sum_probs=60.1
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEE-EeCCCCe-EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRV-FDYSKEQ-LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~v-wd~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
+.+.++.+.|++.+++++ ..|.+.. +|-. ++ -......-...+.++.+.++++.++++ ..|.+++=+.+.+..-.
T Consensus 173 g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVS-SRGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred ceEEEEEECCCCeEEEEe-CCceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 678899999988766655 4554443 2221 22 111122334578899999999877665 56766543334443222
Q ss_pred eccC----CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 378 WGEG----HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 378 ~~~~----h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
.... -...+..+.|.| ++ .+..++.+|.|.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~-------~~-------~~~~~G~~G~v~ 283 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRT-------PG-------EIWAGGGNGTLL 283 (334)
T ss_pred cccCCccccccceeeEEEcC-------CC-------CEEEEcCCCeEE
Confidence 1111 123577888887 66 355566666554
No 472
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=79.76 E-value=66 Score=31.75 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=57.7
Q ss_pred ceEEEEEecCCCcEEEEEeCC------CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 232 RCTSVTWVPGGDGAFVVGHAD------GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
..-+|++.+++. ++++.-.+ ..|+.++.+ +.....++... .+.... ... .-...+..+.+|
T Consensus 86 D~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~---~~~~~~------~~~-~~~~~N~G~E~l 152 (326)
T PF13449_consen 86 DPEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPA---AFLPDA------NGT-SGRRNNRGFEGL 152 (326)
T ss_pred ChhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCC--CcccceEcccc---cccccc------Ccc-ccccCCCCeEEE
Confidence 445788867776 66655555 556666544 44433332110 000000 000 011124789999
Q ss_pred EECCCCCEEEEEEC-----CC---------eEEEEeC--CC-CeE----EEeeee-----cCCceEEEEEccCCCEEEE
Q 008939 306 AFSTDGTYLATVGR-----DG---------YLRVFDY--SK-EQL----ICGGKS-----YYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 306 ~~sp~g~~l~s~~~-----dg---------~v~vwd~--~~-~~~----~~~~~~-----~~~~v~~l~~spdg~~l~s 358 (548)
+++|+|+.|+++.+ |+ .++++.+ .+ ++. ...+.. ....+..+.+-+++++|+.
T Consensus 153 a~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 153 AVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred EECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 99999997666543 22 1455444 33 212 222221 2356777778888776554
No 473
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.15 E-value=16 Score=41.77 Aligned_cols=161 Identities=12% Similarity=0.133 Sum_probs=86.0
Q ss_pred EEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEE--------ccCCCEEEEEeCCCeEEEEECCC----cee---E--E
Q 008939 315 ATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAW--------SMDGKYILTGGEDDLVQVWSMED----RKV---V--A 377 (548)
Q Consensus 315 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~--------spdg~~l~sgs~dg~I~vwd~~~----~~~---~--~ 377 (548)
+..+.|..+.+|+++++.....+.+....|..+.. -|.=+++++-..--.|.++-+.. +.. . .
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence 33456889999999987666666665666666643 33334444444444566654321 111 0 1
Q ss_pred eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCe
Q 008939 378 WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNV 457 (548)
Q Consensus 378 ~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 457 (548)
.+.-....|.++.... +| ++.-+|.|| .||.+.-...- .+-. ......+.+.+. ...
T Consensus 173 ~i~~dg~~V~~I~~t~-------nG-------RIF~~G~dg--~lyEl~Yq~~~-gWf~-~rc~Kiclt~s~----ls~- 229 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTE-------NG-------RIFFAGRDG--NLYELVYQAED-GWFG-SRCRKICLTKSV----LSS- 229 (1311)
T ss_pred eeecCCceEEEEEecc-------CC-------cEEEeecCC--CEEEEEEeccC-chhh-cccccccCchhH----HHH-
Confidence 1122356788888776 88 455566677 55554211000 0000 000001110000 000
Q ss_pred eeecccCCCCceeecCCCCceEEe-ecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 458 CPVGTLQPAPSMRDVPKLSPLVAH-RVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 458 ~~~g~~~~~~~~~d~~~~~~~~~~-~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
-+++ +..+ ..+.++|..|.....+ +.+-++.|+|.+|++.+
T Consensus 230 -------------lvPs---~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 230 -------------LVPS---LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred -------------hhhh---hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 0011 1111 3578899999998864 78889999999999876
No 474
>PLN02193 nitrile-specifier protein
Probab=78.91 E-value=89 Score=32.73 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=35.5
Q ss_pred CCCEEEEEECC----CeEEEEeCCCCeEEEeee----ecCCceEEEEEccCCCEEEEEeCC--------------CeEEE
Q 008939 310 DGTYLATVGRD----GYLRVFDYSKEQLICGGK----SYYGALLCCAWSMDGKYILTGGED--------------DLVQV 367 (548)
Q Consensus 310 ~g~~l~s~~~d----g~v~vwd~~~~~~~~~~~----~~~~~v~~l~~spdg~~l~sgs~d--------------g~I~v 367 (548)
++++++.++.+ ..+.+||+.+.+-...-. .......++ ..-++++++.|+.+ ..+.+
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEE
Confidence 45666666644 458899998765432211 011111222 23356777777753 24778
Q ss_pred EECCCcee
Q 008939 368 WSMEDRKV 375 (548)
Q Consensus 368 wd~~~~~~ 375 (548)
||+.+.+-
T Consensus 407 ~D~~t~~W 414 (470)
T PLN02193 407 LDTETLQW 414 (470)
T ss_pred EEcCcCEE
Confidence 88876643
No 475
>PLN02193 nitrile-specifier protein
Probab=78.03 E-value=94 Score=32.54 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=35.5
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeEEEeee-----ecCCceEEEEEccCCCEEEEEeCC----CeEEEEECCCcee
Q 008939 310 DGTYLATVGRD-----GYLRVFDYSKEQLICGGK-----SYYGALLCCAWSMDGKYILTGGED----DLVQVWSMEDRKV 375 (548)
Q Consensus 310 ~g~~l~s~~~d-----g~v~vwd~~~~~~~~~~~-----~~~~~v~~l~~spdg~~l~sgs~d----g~I~vwd~~~~~~ 375 (548)
++++++.|+.+ ..+..||+.+.+-...-. ...... .++ .-++++++.++.+ ..+.+||+.+.+-
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 45666666654 346788887665322110 011111 122 2367777777755 4689999987654
No 476
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=78.03 E-value=87 Score=32.17 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCeeEEEEeCC--eEEEEECCCeEEEEeCCC
Q 008939 486 EPLSGLIFTQE--SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 486 ~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~ 514 (548)
..|..|...+. .|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34888988885 599999999999999864
No 477
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=77.83 E-value=1.4e+02 Score=34.45 Aligned_cols=140 Identities=14% Similarity=0.205 Sum_probs=81.2
Q ss_pred CceEEEEEc---------CCcEEEEEeeecccccccceeeee---eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcE
Q 008939 188 GHDLLIGLN---------SGDVYSVSLRQQLQDVGKKLVGAH---HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNL 255 (548)
Q Consensus 188 ~~~l~~g~~---------dg~I~iwdl~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v 255 (548)
..+|++|.. .|.++|+|+-...++++++..... -+.++ .+++|..++=. +| .|+++.. -+|
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE---~KGtVsavceV-~G--~l~~~~G-qKI 1118 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEE---QKGTVSAVCEV-RG--HLLSSQG-QKI 1118 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhh---cccceEEEEEe-cc--EEEEccC-cEE
Confidence 357888864 378999999876666665443221 12222 46777776654 34 4666544 589
Q ss_pred EEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC----------CCCCEEEEEECCCeEEE
Q 008939 256 YVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS----------TDGTYLATVGRDGYLRV 325 (548)
Q Consensus 256 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s----------p~g~~l~s~~~dg~v~v 325 (548)
.||+++.+ ..+..++|- -=+++|+.|.--..|.+
T Consensus 1119 ~v~~l~r~------------------------------------~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisf 1162 (1366)
T KOG1896|consen 1119 IVRKLDRD------------------------------------SELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISF 1162 (1366)
T ss_pred EEEEeccC------------------------------------CcceeeEEeccceeEEehhhhhhheehhhhhhceEE
Confidence 99999542 233334441 12345666655555655
Q ss_pred EeCCCCeEEEeeee-c--CCceEEEEEccCCC--EEEEEeCCCeEEEEEC
Q 008939 326 FDYSKEQLICGGKS-Y--YGALLCCAWSMDGK--YILTGGEDDLVQVWSM 370 (548)
Q Consensus 326 wd~~~~~~~~~~~~-~--~~~v~~l~~spdg~--~l~sgs~dg~I~vwd~ 370 (548)
.-+...-....+-+ . .-.+.++.|--||. .++++..|+.|++|-.
T Consensus 1163 l~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1163 LGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred EEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence 55543322222211 1 12467777877776 5778888999999854
No 478
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=77.68 E-value=1.3e+02 Score=33.86 Aligned_cols=172 Identities=13% Similarity=0.139 Sum_probs=98.6
Q ss_pred CCCCCceeEEeC-------CCCCEEEEecCCeEEEEE------ccCCC-------CCCeEEEec---CCCCceEEEecCC
Q 008939 128 SSSTSMTNTNFD-------GKGTYIIFNVGDAIFISD------LNSQD-------KDPIKSIHF---SNSNPVCHAFDQD 184 (548)
Q Consensus 128 ~h~~~v~~~~~~-------~~g~~l~~~~~d~v~vwd------~~~~~-------~~~i~~~~~---~~~~~~~~~~~p~ 184 (548)
....+|..+.|. +..++|++-....+.|+. +.... ..++..+.+ .......++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 346677788877 233577777777777777 21111 135555554 3446788999998
Q ss_pred CCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcc-----cCcceEEEEEecCCCcEEEEEeCCCcEEEEE
Q 008939 185 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV-----NNSRCTSVTWVPGGDGAFVVGHADGNLYVYE 259 (548)
Q Consensus 185 ~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd 259 (548)
. ...|++-...|.-.|||+..........+.. ..+..+.+ ..+.-..|.|.++-. .|++++. ..+.++|
T Consensus 157 ~--~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~--~~~~~gsi~~d~~e~s~w~rI~W~~~~~-~lLv~~r-~~l~~~d 230 (765)
T PF10214_consen 157 D--QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRL--SRNISGSIIFDPEELSNWKRILWVSDSN-RLLVCNR-SKLMLID 230 (765)
T ss_pred c--cceEEEEeccCcEEEEEeccccccCCcceee--ccCCCccccCCCcccCcceeeEecCCCC-EEEEEcC-CceEEEE
Confidence 4 4589999999999999992210111111111 11111211 123445889988877 6776665 5789999
Q ss_pred cCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCC
Q 008939 260 KSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~ 330 (548)
++......... .......|..+.-+++ ..+++.-+ ...|...++..
T Consensus 231 ~~~~~~~~~l~------------------------~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 231 FESNWQTEYLV------------------------TAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CCCCCccchhc------------------------cCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 98643221100 0111255777777775 22333322 35677777765
No 479
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=77.61 E-value=83 Score=31.67 Aligned_cols=212 Identities=17% Similarity=0.211 Sum_probs=108.4
Q ss_pred CCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEec--CCCCCCceEEEEEcC----CcEEEEEeeeccccc
Q 008939 140 GKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFD--QDAKDGHDLLIGLNS----GDVYSVSLRQQLQDV 212 (548)
Q Consensus 140 ~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~--p~~~~~~~l~~g~~d----g~I~iwdl~~~~~~~ 212 (548)
|...+|+....+ -+.+||++. +.+..+....-+-..+.+. -.++ ...|++++.. ..|.+|.+... .
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G---k~lq~~~~Gr~NNVDvrygf~l~g~-~vDlavas~R~~g~n~l~~f~id~~---~ 138 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG---KELQSLPVGRPNNVDVRYGFPLNGK-TVDLAVASDRSDGRNSLRLFRIDPD---T 138 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS----EEEEE-SS-EEEEEEEEEEEETTE-EEEEEEEEE-CCCT-EEEEEEEETT---T
T ss_pred cccceEEEEeCCCCEEEEcCCC---cEEEeecCCCcceeeeecceecCCc-eEEEEEEecCcCCCCeEEEEEecCC---C
Confidence 344455554444 999999995 3555554221111223222 1111 1235555542 35999988641 0
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEe--c-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWV--P-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~--p-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
..+................++.+|+- | ++..++++...+|.+.-|.+...+..... .
T Consensus 139 -g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~-------------------~ 198 (381)
T PF02333_consen 139 -GELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVS-------------------A 198 (381)
T ss_dssp -TEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEE-------------------E
T ss_pred -CcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEe-------------------e
Confidence 11111100000000023356777764 3 34546777888999999988643221111 1
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC-----CeEEEeeee--cCCceEEEEEc--cCCC-EEEEE
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK-----EQLICGGKS--YYGALLCCAWS--MDGK-YILTG 359 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-----~~~~~~~~~--~~~~v~~l~~s--pdg~-~l~sg 359 (548)
.+++.|... ..+..|.......+|+.+-++.-|..|+.+- ++++....+ ....|-.|++- .+++ ||++.
T Consensus 199 ~lVR~f~~~-sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivS 277 (381)
T PF02333_consen 199 TLVREFKVG-SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVS 277 (381)
T ss_dssp EEEEEEE-S-S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEE
T ss_pred EEEEEecCC-CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEE
Confidence 235555543 4788999998888999999998888888752 233322222 34567777764 3443 45444
Q ss_pred e-CCCeEEEEECCCc-eeEEec
Q 008939 360 G-EDDLVQVWSMEDR-KVVAWG 379 (548)
Q Consensus 360 s-~dg~I~vwd~~~~-~~~~~~ 379 (548)
+ .++...||+.+.. ..+..|
T Consensus 278 sQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 278 SQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EGGGTEEEEEESSTT--EEEEE
T ss_pred cCCCCeEEEEecCCCCcccceE
Confidence 4 5789999998753 334443
No 480
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=76.61 E-value=1e+02 Score=32.29 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=63.5
Q ss_pred EEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCc---eEEEEEccCCCEEEEEeC-------------CCeEEEE
Q 008939 305 IAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA---LLCCAWSMDGKYILTGGE-------------DDLVQVW 368 (548)
Q Consensus 305 ~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~---v~~l~~spdg~~l~sgs~-------------dg~I~vw 368 (548)
+.+-++|.+++... ..++.+|+. |+.+......... =..+..-|+|++|+.+.. +..|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 56678888776554 788888885 6665554322211 245778899998887772 2235555
Q ss_pred ECCCceeEEecc--CC-----------------------C--CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 369 SMEDRKVVAWGE--GH-----------------------N--SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 369 d~~~~~~~~~~~--~h-----------------------~--~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
| .+++.+..+. .| . -.+.++.+.+. ++ .+|+|.-.-..|.
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~------dd------~iivSsR~~s~V~ 296 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS------DD------SIIVSSRHQSAVI 296 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT------TT------EEEEEETTT-EEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC------CC------eEEEEcCcceEEE
Confidence 6 6665554331 11 1 24678888771 44 6777777777999
Q ss_pred EEECCCCeEEeeeec
Q 008939 422 LWDLEMDEIVVPLRR 436 (548)
Q Consensus 422 lwd~~~~~~~~~~~~ 436 (548)
..|.++++....+..
T Consensus 297 ~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 297 KIDYRTGKIKWILGP 311 (477)
T ss_dssp EEE-TTS-EEEEES-
T ss_pred EEECCCCcEEEEeCC
Confidence 999999998877755
No 481
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.09 E-value=37 Score=35.11 Aligned_cols=77 Identities=14% Similarity=0.252 Sum_probs=51.4
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEe---------CCCCeEEEeee-----------ecCCceEEEEEccCC---CEE
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFD---------YSKEQLICGGK-----------SYYGALLCCAWSMDG---KYI 356 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd---------~~~~~~~~~~~-----------~~~~~v~~l~~spdg---~~l 356 (548)
-.|..+..++.|..++..+.+|.+.++= ++.++.+...+ ...-.+.-++|+|+. ..|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 3577788899999999999998655542 12332211111 011235667899976 568
Q ss_pred EEEeCCCeEEEEECCCceeE
Q 008939 357 LTGGEDDLVQVWSMEDRKVV 376 (548)
Q Consensus 357 ~sgs~dg~I~vwd~~~~~~~ 376 (548)
..-..|..|++||+...+.+
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 88889999999999765544
No 482
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=75.21 E-value=82 Score=30.65 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=0.0
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE--CC-
Q 008939 233 CTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF--ST- 309 (548)
Q Consensus 233 v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--sp- 309 (548)
.+.+++......++-+.+......-|.-.. .....+......+--+..+.| +|
T Consensus 154 LNGlA~~~g~p~yVTa~~~sD~~~gWR~~~------------------------~~gG~vidv~s~evl~~GLsmPhSPR 209 (335)
T TIGR03032 154 LNGMALDDGEPRYVTALSQSDVADGWREGR------------------------RDGGCVIDIPSGEVVASGLSMPHSPR 209 (335)
T ss_pred ecceeeeCCeEEEEEEeeccCCcccccccc------------------------cCCeEEEEeCCCCEEEcCccCCcCCc
Q ss_pred --CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe--------------------EEE
Q 008939 310 --DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL--------------------VQV 367 (548)
Q Consensus 310 --~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~--------------------I~v 367 (548)
+|++.+.-+..|.+..+|.++|+...... -.+....++|. |.++++|-..-. |.+
T Consensus 210 WhdgrLwvldsgtGev~~vD~~~G~~e~Va~-vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~v 286 (335)
T TIGR03032 210 WYQGKLWLLNSGRGELGYVDPQAGKFQPVAF-LPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAV 286 (335)
T ss_pred EeCCeEEEEECCCCEEEEEcCCCCcEEEEEE-CCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEE
Q ss_pred EECCCceeEEecc--CCCCCeEEEEEec
Q 008939 368 WSMEDRKVVAWGE--GHNSWVSGVAFDS 393 (548)
Q Consensus 368 wd~~~~~~~~~~~--~h~~~V~~v~~~p 393 (548)
.|++++..++.++ +--..+..|+.-|
T Consensus 287 idl~tG~vv~~l~feg~v~EifdV~vLP 314 (335)
T TIGR03032 287 IDLNSGDVVHWLRFEGVIEEIYDVAVLP 314 (335)
T ss_pred EECCCCCEEEEEEeCCceeEEEEEEEec
No 483
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=74.85 E-value=44 Score=32.13 Aligned_cols=72 Identities=15% Similarity=0.300 Sum_probs=49.8
Q ss_pred eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe------CCCeEEEEECCCceeEEecc----CCCCCeEEEEE
Q 008939 322 YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG------EDDLVQVWSMEDRKVVAWGE----GHNSWVSGVAF 391 (548)
Q Consensus 322 ~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs------~dg~I~vwd~~~~~~~~~~~----~h~~~V~~v~~ 391 (548)
.|++||....+-..-..+-.+.|..+.|..+.++++.|. ....+..||+.+......-. .-.++|..+.+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~ 96 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTF 96 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEe
Confidence 489999887765554455667899999997777777664 45678899998765432222 12478888887
Q ss_pred ec
Q 008939 392 DS 393 (548)
Q Consensus 392 ~p 393 (548)
..
T Consensus 97 ~~ 98 (281)
T PF12768_consen 97 IS 98 (281)
T ss_pred ec
Confidence 43
No 484
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=74.23 E-value=64 Score=37.00 Aligned_cols=106 Identities=17% Similarity=0.267 Sum_probs=70.7
Q ss_pred CEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeee
Q 008939 143 TYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHY 222 (548)
Q Consensus 143 ~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~ 222 (548)
.+++.+.+..|.||+++... .+.-+.|-.-.+..+....- .++|+.|.--..|.+.-... ++ ..+. -+
T Consensus 1108 G~l~~~~GqKI~v~~l~r~~--~ligVaFiD~~~yv~s~~~v---knlIl~gDV~ksisfl~fqe---ep-~rls---L~ 1175 (1366)
T KOG1896|consen 1108 GHLLSSQGQKIIVRKLDRDS--ELIGVAFIDLPLYVHSMKVV---KNLILAGDVMKSISFLGFQE---EP-YRLS---LL 1175 (1366)
T ss_pred cEEEEccCcEEEEEEeccCC--cceeeEEeccceeEEehhhh---hhheehhhhhhceEEEEEcc---Cc-eEEE---Ee
Confidence 35667778899999996543 55566665555555555444 66888888777787776543 11 1111 12
Q ss_pred ccCCcccCcceEEEEEecCCCc-EEEEEeCCCcEEEEEcCC
Q 008939 223 NKDGSVNNSRCTSVTWVPGGDG-AFVVGHADGNLYVYEKSK 262 (548)
Q Consensus 223 ~~~~~~~~~~v~~l~~~p~~~~-~l~s~~~dg~v~vwd~~~ 262 (548)
.++. ..-.++++.|.-+|.+ .|+++..|++|++|-..-
T Consensus 1176 srd~--~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1176 SRDF--EPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred ecCC--chhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCC
Confidence 2222 4567889999888775 688899999999998764
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=72.80 E-value=89 Score=30.09 Aligned_cols=53 Identities=15% Similarity=0.291 Sum_probs=35.5
Q ss_pred CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe------CCCcEEEEEcCC
Q 008939 197 SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH------ADGNLYVYEKSK 262 (548)
Q Consensus 197 dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~------~dg~v~vwd~~~ 262 (548)
...|++||..... |+.-+..-.+.|++|.|..+.+ +++.|. ....+..||+..
T Consensus 15 C~~lC~yd~~~~q------------W~~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~ 73 (281)
T PF12768_consen 15 CPGLCLYDTDNSQ------------WSSPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKN 73 (281)
T ss_pred CCEEEEEECCCCE------------eecCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCC
Confidence 3458999987622 2222223578899999996665 777664 355788888875
No 486
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=72.18 E-value=39 Score=34.24 Aligned_cols=164 Identities=13% Similarity=0.149 Sum_probs=90.2
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEE-ecCCCC----ce-EEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSI-HFSNSN----PV-CHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~-~~~~~~----~~-~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.+..+-..|||+.+..-.+.++.|+++.+... .++++ .-.++. ++ .+..-. .+.-|+++..||-|.-|
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l-~~rkl~~dspg~~~~~Vte~l~lL~---Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSL-QIRKLVDDSPGDSRHQVTEQLYLLS---GGFSLLVVHEDGLVSQW 295 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeeccccc-chhhhhhcCCCchHHHHHHHHHHHh---CceeEEEEcCCCceeee
Confidence 4455667788999999988888999999986431 11222 111221 11 000011 25568999999999877
Q ss_pred -EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 204 -SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 204 -dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|++.. ....+ +..++.+....++..+.=-.+.+ -|++-+..|++.++.........
T Consensus 296 Fdvr~~---~~p~l----~h~R~f~l~pa~~~~l~pe~~rk-gF~~l~~~G~L~~f~st~~~~lL--------------- 352 (733)
T COG4590 296 FDVRRD---GQPHL----NHIRNFKLAPAEVQFLLPETNRK-GFYSLYRNGTLQSFYSTSEKLLL--------------- 352 (733)
T ss_pred eeeecC---CCCcc----eeeeccccCcccceeeccccccc-eEEEEcCCCceeeeecccCccee---------------
Confidence 55541 11111 11111111222333222212222 57777788888877654321110
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL 333 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~ 333 (548)
++.--..+.-+++||.+.+|++- ..|.++++.+++...
T Consensus 353 ------------~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 353 ------------FERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred ------------hhhhhcCcceeeeCcccchheee-cCCceEEEEecCCCC
Confidence 01111356678999999988875 457799998876543
No 487
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=71.95 E-value=93 Score=29.60 Aligned_cols=235 Identities=11% Similarity=0.043 Sum_probs=127.2
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
+.....++-++||..-..+... .+=-.|-.+++ ....--.....+..+...|+ +..-++-... -|.-+|-++
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGe--v~~ypLg~Ga~Phgiv~gpd---g~~Witd~~~-aI~R~dpkt- 133 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGE--VETYPLGSGASPHGIVVGPD---GSAWITDTGL-AIGRLDPKT- 133 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCc--eEEEecCCCCCCceEEECCC---CCeeEecCcc-eeEEecCcc-
Confidence 3445567888888776665444 55555655543 33333335567777777777 3322222221 343333322
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC---------CCcEEEEEcCCCCCCCCCccccccccee
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA---------DGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~---------dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
.....|.-..+..........|.+.|. +-+++.. .+.|++|+.-.
T Consensus 134 --------~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaPq----------------- 187 (353)
T COG4257 134 --------LEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAPQ----------------- 187 (353)
T ss_pred --------cceEEeecccccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccCC-----------------
Confidence 111112111222456677888988887 5555542 13344444332
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE--EEeeeecCCceEEEEEccCCCEEE
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL--ICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~--~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
...-+.|+..|||..-++.-.+..|-..|..++.. +-.-.......+.+--+|.|..-+
T Consensus 188 -------------------G~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wi 248 (353)
T COG4257 188 -------------------GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWI 248 (353)
T ss_pred -------------------CCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEE
Confidence 14567888899999888777777888888766522 211122123345555677888777
Q ss_pred EEeCCCeEEEEECCCceeE-EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 358 TGGEDDLVQVWSMEDRKVV-AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~~~~-~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
+-...+.+..+|-.+..-. ..+.+....-.++..+. .+ +.-++-..-+.|.-+|-++.+
T Consensus 249 ttwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~-------~g------rVW~sea~agai~rfdpeta~ 308 (353)
T COG4257 249 TTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR-------HG------RVWLSEADAGAIGRFDPETAR 308 (353)
T ss_pred eccCCceeeEeCcccccceeeeCCCCCCCcceeeecc-------CC------cEEeeccccCceeecCcccce
Confidence 7777788888887654422 22333333444555543 33 233333344566666665543
No 488
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=71.68 E-value=57 Score=28.74 Aligned_cols=29 Identities=10% Similarity=0.390 Sum_probs=24.5
Q ss_pred CCeeEEEEeCC-------e-EEEEECCCeEEEEeCCC
Q 008939 486 EPLSGLIFTQE-------S-VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 486 ~~V~~l~fspd-------~-l~t~s~Dg~I~iW~~~~ 514 (548)
..|.+++|+|. + |+..+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 37999999993 1 88889999999999775
No 489
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=70.98 E-value=1.1e+02 Score=29.89 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=34.3
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC
Q 008939 344 LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH 382 (548)
Q Consensus 344 v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h 382 (548)
+++|...++|.+|++.-.-..|.+.|-++++.+-.+.+.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 677888889999999988899999999999998888765
No 490
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.22 E-value=86 Score=28.51 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=30.6
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeee------------ecCCceEEEEEccCC-CEEEEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGK------------SYYGALLCCAWSMDG-KYILTG 359 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~------------~~~~~v~~l~~spdg-~~l~sg 359 (548)
+|...|-.-.+..|...|.++|+.+..+. .+..-.+.+++.|++ +++++|
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 45555555555556666666676654432 244567789999987 455555
No 491
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=69.40 E-value=25 Score=22.04 Aligned_cols=29 Identities=7% Similarity=0.184 Sum_probs=23.1
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
+++++.-.++.|.++|..+++.+..+...
T Consensus 5 ~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 5 KLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 45666667899999999999888877653
No 492
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=68.83 E-value=94 Score=28.40 Aligned_cols=122 Identities=12% Similarity=0.153 Sum_probs=69.5
Q ss_pred eeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC------cEEEE-Eee
Q 008939 134 TNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG------DVYSV-SLR 206 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg------~I~iw-dl~ 206 (548)
..+.-.+.+.++++.++..|.+|++.....+++..+. .-+.+..+.++.. |++|++-=.+. .+++| +.+
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~---GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEA---GDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccc---cceEEEEEeecCCccceEEEEEEEhh
Confidence 3444444344444456669999999965555666665 4478899999988 77888764433 34554 222
Q ss_pred ecccccccceeeeee-------eccCCc--------ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 008939 207 QQLQDVGKKLVGAHH-------YNKDGS--------VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK 262 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~-------~~~~~~--------~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~ 262 (548)
.. .+...++..... ...... .-...+.|++..|-.. -|++|+. +.+.+|.+..
T Consensus 97 ~~-~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG-~LlVg~~-~~l~lf~l~~ 164 (215)
T PF14761_consen 97 SQ-KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG-NLLVGCG-NKLVLFTLKY 164 (215)
T ss_pred hh-cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCC-CEEEEcC-CEEEEEEEEE
Confidence 21 011111110000 000000 1356788999998766 4666654 5899998865
No 493
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=68.43 E-value=53 Score=25.36 Aligned_cols=42 Identities=19% Similarity=0.071 Sum_probs=28.7
Q ss_pred ECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe
Q 008939 318 GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 318 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
..+|.|..||..+++....+.+- ...+.|++++|+.+++.+-
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEe
Confidence 34588999999998765444443 3578899999999777653
No 494
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=66.91 E-value=2.1e+02 Score=31.62 Aligned_cols=91 Identities=15% Similarity=0.276 Sum_probs=50.6
Q ss_pred CeEEEEECCCCCEEEEEECCCe-----EEEEeCC---CCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008939 301 SINSIAFSTDGTYLATVGRDGY-----LRVFDYS---KEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~dg~-----v~vwd~~---~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~ 372 (548)
.-..+.|-|+|..+++-..||. |+++.-+ .|+.-.. .+....+..++|.-....++.+ ..+.|.+|-..+
T Consensus 248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkN 325 (1243)
T COG5290 248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKN 325 (1243)
T ss_pred chhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccc
Confidence 3345889999999999876652 4444322 1221111 1122345556776665555544 457899998776
Q ss_pred ceeEEeccCCCCCeEEEEEec
Q 008939 373 RKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 373 ~~~~~~~~~h~~~V~~v~~~p 393 (548)
........-.-..+.-+.|+|
T Consensus 326 yhWYLK~e~~ip~~s~vkwhp 346 (1243)
T COG5290 326 YHWYLKVERQIPGISYVKWHP 346 (1243)
T ss_pred eEEEEEEeecCCCcceeeecc
Confidence 543322222333455566766
No 495
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=66.57 E-value=20 Score=22.27 Aligned_cols=29 Identities=21% Similarity=0.519 Sum_probs=21.3
Q ss_pred CcceEEEEEecCCCcEEEEEeCC--CcEEEE
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHAD--GNLYVY 258 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~d--g~v~vw 258 (548)
...-....|+|||+.++.++..+ |...||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 44567889999999777777777 777766
No 496
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=66.54 E-value=23 Score=22.03 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=18.3
Q ss_pred CCeEEEEECCCCCEEEEEEC-C--CeEEEE
Q 008939 300 GSINSIAFSTDGTYLATVGR-D--GYLRVF 326 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~-d--g~v~vw 326 (548)
+.-....|+|||+.|+.++. + |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 55678899999998887664 3 455554
No 497
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.03 E-value=1.1e+02 Score=35.25 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.7
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCcee
Q 008939 350 SMDGKYILTGGEDDLVQVWSMEDRKV 375 (548)
Q Consensus 350 spdg~~l~sgs~dg~I~vwd~~~~~~ 375 (548)
+.++..++++..|+.+..||...++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 78899999999999999999998754
No 498
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=65.46 E-value=1.6e+02 Score=29.95 Aligned_cols=238 Identities=13% Similarity=0.110 Sum_probs=0.0
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
+...+.|. ++..++++....|..-+=....++.+..-...+.....+..... +...+++ ..|.|+.-+-....+.
T Consensus 138 ~l~~v~f~-~~~g~~vG~~G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~---~~~~ivg-~~G~v~~S~D~G~tW~ 212 (398)
T PLN00033 138 RFNSISFK-GKEGWIIGKPAILLHTSDGGETWERIPLSPKLPGEPVLIKATGP---KSAEMVT-DEGAIYVTSNAGRNWK 212 (398)
T ss_pred ceeeeEEE-CCEEEEEcCceEEEEEcCCCCCceECccccCCCCCceEEEEECC---CceEEEe-ccceEEEECCCCCCce
Q ss_pred cccceeeeeeeccCCc-------ccCcceEEEEEecCCCcEEEEEeCCCcEEE--------EEcCCCCCCCCCccccccc
Q 008939 212 VGKKLVGAHHYNKDGS-------VNNSRCTSVTWVPGGDGAFVVGHADGNLYV--------YEKSKDGAGDSSFPVIKDQ 276 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~-------~~~~~v~~l~~~p~~~~~l~s~~~dg~v~v--------wd~~~~~~~~~~~~~~~~~ 276 (548)
..........++.... .-.+....+..++++. ++..+..|.++. |........
T Consensus 213 ~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~--~~~vg~~G~~~~s~d~G~~~W~~~~~~~~---------- 280 (398)
T PLN00033 213 AAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGD--YVAVSSRGNFYLTWEPGQPYWQPHNRASA---------- 280 (398)
T ss_pred EcccccccccccccccccccccceeccceeeEEEcCCCC--EEEEECCccEEEecCCCCcceEEecCCCc----------
Q ss_pred ceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCc-----eEEEEEcc
Q 008939 277 TQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA-----LLCCAWSM 351 (548)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-----v~~l~~sp 351 (548)
..+..+.|.+++..++++..-+.++--|--....+..+...... +..+.|.+
T Consensus 281 -----------------------~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~ 337 (398)
T PLN00033 281 -----------------------RRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRS 337 (398)
T ss_pred -----------------------cceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcC
Q ss_pred CCCEEEEEeCCCeEEEEECC--CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 008939 352 DGKYILTGGEDDLVQVWSME--DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424 (548)
Q Consensus 352 dg~~l~sgs~dg~I~vwd~~--~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd 424 (548)
++..+++| .+|.+....-. +.+....-..-....+.+.|.+ ++ .....+.+|.|.-|.
T Consensus 338 d~~~~a~G-~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~-------~~-------~g~~~G~~G~il~~~ 397 (398)
T PLN00033 338 KKEAWAAG-GSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFD-------DK-------KGFVLGNDGVLLRYL 397 (398)
T ss_pred CCcEEEEE-CCCcEEEeCCCCcceeEccccCCCCcceeEEEEcC-------CC-------ceEEEeCCcEEEEeC
No 499
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.33 E-value=1.1e+02 Score=31.92 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=52.3
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
.-.|..+..++.|. .++..+.+|.+.++=.+..|... .++++.....+.... -...+.. ....-.+...+|+|
T Consensus 103 ~feV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s----~~eDgk~~v~CRt~~-i~~~~ft-ss~~ltl~Qa~WHP 175 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNS----EFEDGKSTVNCRTTP-VAERFFT-SSTSLTLKQAAWHP 175 (741)
T ss_pred eEEEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccc----eecCCCceEEEEeec-ccceeec-cCCceeeeeccccC
Confidence 45678889999999 67777778876665432211100 011111100000000 0000000 00113466788999
Q ss_pred CC---CEEEEEECCCeEEEEeCCCCeE
Q 008939 310 DG---TYLATVGRDGYLRVFDYSKEQL 333 (548)
Q Consensus 310 ~g---~~l~s~~~dg~v~vwd~~~~~~ 333 (548)
+. ..|..-+.|..+|+||+.....
T Consensus 176 ~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 176 SSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred CccCCceEEEEecCcEEEEEecCCcch
Confidence 65 5778888899999999975443
No 500
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=63.52 E-value=18 Score=21.40 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=20.8
Q ss_pred EEEEEECCCeEEEEeCCCCeEEEee
Q 008939 313 YLATVGRDGYLRVFDYSKEQLICGG 337 (548)
Q Consensus 313 ~l~s~~~dg~v~vwd~~~~~~~~~~ 337 (548)
.++.++.+|.+..+|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999999999887653
Done!