Query 008939
Match_columns 548
No_of_seqs 539 out of 2770
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 15:10:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 6.2E-44 2.1E-48 384.9 43.5 364 125-545 54-560 (611)
2 1nr0_A Actin interacting prote 100.0 1.4E-42 4.7E-47 374.4 44.3 326 128-516 16-357 (611)
3 3ow8_A WD repeat-containing pr 100.0 1.9E-42 6.7E-47 342.7 39.0 286 126-513 28-320 (321)
4 1vyh_C Platelet-activating fac 100.0 2.7E-42 9.4E-47 353.7 39.4 285 124-512 102-409 (410)
5 2ymu_A WD-40 repeat protein; u 100.0 3.3E-41 1.1E-45 360.9 46.1 350 126-545 217-573 (577)
6 1got_B GT-beta; complex (GTP-b 100.0 1.4E-40 4.8E-45 332.2 42.9 287 124-511 49-340 (340)
7 4gqb_B Methylosome protein 50; 100.0 2.7E-41 9.2E-46 337.5 35.5 291 128-517 28-334 (344)
8 2ymu_A WD-40 repeat protein; u 100.0 5.2E-40 1.8E-44 351.6 47.5 378 126-545 12-450 (577)
9 2pbi_B Guanine nucleotide-bind 100.0 7.7E-40 2.6E-44 328.7 42.4 289 125-511 59-354 (354)
10 2ynn_A Coatomer subunit beta'; 100.0 7.4E-40 2.5E-44 321.7 39.0 286 125-514 8-302 (304)
11 3iz6_a 40S ribosomal protein R 100.0 9.7E-41 3.3E-45 338.7 31.8 301 124-516 60-377 (380)
12 4g56_B MGC81050 protein; prote 100.0 3.6E-40 1.2E-44 331.5 33.6 291 127-516 39-345 (357)
13 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.8E-39 6.1E-44 324.9 36.1 303 126-516 11-337 (345)
14 2hes_X YDR267CP; beta-propelle 100.0 4E-39 1.4E-43 320.3 37.6 297 126-514 10-328 (330)
15 3frx_A Guanine nucleotide-bind 100.0 9.6E-39 3.3E-43 316.0 38.5 293 125-514 12-317 (319)
16 3ow8_A WD repeat-containing pr 100.0 6.7E-39 2.3E-43 317.3 36.6 280 169-545 28-314 (321)
17 1vyh_C Platelet-activating fac 100.0 1E-38 3.5E-43 327.1 39.2 284 166-545 101-404 (410)
18 1erj_A Transcriptional repress 100.0 2.2E-38 7.5E-43 322.9 40.0 282 128-514 62-389 (393)
19 2ynn_A Coatomer subunit beta'; 100.0 4.9E-38 1.7E-42 308.7 40.0 282 164-545 4-296 (304)
20 4ery_A WD repeat-containing pr 100.0 7E-38 2.4E-42 308.5 39.7 288 123-513 16-311 (312)
21 1got_B GT-beta; complex (GTP-b 100.0 8.9E-38 3E-42 311.9 39.7 285 164-545 46-336 (340)
22 2xzm_R RACK1; ribosome, transl 100.0 8.7E-38 3E-42 312.4 36.7 300 125-514 16-340 (343)
23 2pbi_B Guanine nucleotide-bind 100.0 5.3E-37 1.8E-41 308.1 41.7 288 164-545 55-350 (354)
24 1pgu_A Actin interacting prote 100.0 1.3E-37 4.5E-42 335.1 39.8 354 127-544 15-394 (615)
25 3sfz_A APAF-1, apoptotic pepti 100.0 3.2E-37 1.1E-41 359.2 46.1 367 123-545 608-1151(1249)
26 1r5m_A SIR4-interacting protei 100.0 7.1E-38 2.4E-42 320.8 34.8 327 124-514 39-425 (425)
27 4aow_A Guanine nucleotide-bind 100.0 4.4E-37 1.5E-41 305.7 38.7 298 125-516 33-339 (340)
28 1gxr_A ESG1, transducin-like e 100.0 2.1E-37 7.3E-42 307.2 36.2 325 129-512 8-335 (337)
29 4g56_B MGC81050 protein; prote 100.0 6.7E-38 2.3E-42 314.9 32.4 310 136-545 11-336 (357)
30 2pm9_A Protein WEB1, protein t 100.0 8.2E-38 2.8E-42 320.1 31.4 328 130-545 12-407 (416)
31 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-36 4.5E-41 354.1 44.2 386 126-540 653-1197(1249)
32 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.4E-37 2.5E-41 305.9 35.6 299 165-545 7-328 (345)
33 4gqb_B Methylosome protein 50; 100.0 2.4E-36 8.1E-41 301.7 37.4 294 152-545 15-324 (344)
34 3zwl_B Eukaryotic translation 100.0 1E-35 3.5E-40 298.7 42.3 313 123-516 25-348 (369)
35 3frx_A Guanine nucleotide-bind 100.0 6.2E-36 2.1E-40 295.8 40.0 282 166-545 10-310 (319)
36 2oaj_A Protein SNI1; WD40 repe 100.0 7.9E-37 2.7E-41 342.0 37.2 383 128-545 56-654 (902)
37 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-36 4.3E-41 306.4 34.7 320 128-516 6-363 (372)
38 2hes_X YDR267CP; beta-propelle 100.0 3.3E-36 1.1E-40 299.2 36.8 297 164-545 5-321 (330)
39 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-37 4.6E-42 326.6 27.6 326 139-515 170-518 (524)
40 1sq9_A Antiviral protein SKI8; 100.0 7.9E-36 2.7E-40 303.6 39.5 320 125-515 11-396 (397)
41 1pgu_A Actin interacting prote 100.0 1.1E-35 3.9E-40 319.9 41.1 363 125-545 58-565 (615)
42 3dwl_C Actin-related protein 2 100.0 5.3E-37 1.8E-41 310.2 26.9 332 129-512 10-377 (377)
43 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-35 4.1E-40 330.9 40.4 362 126-545 9-416 (814)
44 1r5m_A SIR4-interacting protei 100.0 3.4E-36 1.2E-40 308.3 33.2 338 152-545 26-418 (425)
45 3i2n_A WD repeat-containing pr 100.0 7E-36 2.4E-40 298.9 34.2 311 124-515 12-354 (357)
46 3iz6_a 40S ribosomal protein R 100.0 1.5E-36 5.1E-41 307.8 29.1 302 154-545 49-368 (380)
47 1gxr_A ESG1, transducin-like e 100.0 1.6E-35 5.4E-40 293.7 35.6 314 172-545 8-330 (337)
48 3vl1_A 26S proteasome regulato 100.0 2.3E-36 7.9E-41 310.1 30.6 318 132-514 58-419 (420)
49 3ei3_B DNA damage-binding prot 100.0 5.4E-36 1.8E-40 303.7 32.8 286 125-514 68-382 (383)
50 2xzm_R RACK1; ribosome, transl 100.0 5E-35 1.7E-39 292.3 39.1 284 165-545 13-333 (343)
51 3dm0_A Maltose-binding peripla 100.0 3.3E-35 1.1E-39 321.7 40.9 306 126-513 378-692 (694)
52 3odt_A Protein DOA1; ubiquitin 100.0 4.9E-35 1.7E-39 287.2 37.6 282 125-516 13-298 (313)
53 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-35 4E-40 332.5 37.3 376 125-545 12-512 (902)
54 3v7d_B Cell division control p 100.0 9.3E-35 3.2E-39 302.5 41.2 339 125-511 116-460 (464)
55 3k26_A Polycomb protein EED; W 100.0 2.4E-36 8.1E-41 303.2 28.1 289 126-513 14-365 (366)
56 3gre_A Serine/threonine-protei 100.0 1.9E-35 6.7E-40 305.1 33.7 328 127-511 60-437 (437)
57 4h5i_A Guanine nucleotide-exch 100.0 6E-35 2E-39 294.3 35.7 291 130-516 14-345 (365)
58 4ery_A WD repeat-containing pr 100.0 3.2E-34 1.1E-38 282.3 39.9 275 165-541 15-299 (312)
59 1erj_A Transcriptional repress 100.0 1.5E-34 5.1E-39 294.5 38.6 289 171-545 62-382 (393)
60 4e54_B DNA damage-binding prot 100.0 9.8E-36 3.4E-40 307.5 28.8 291 126-516 115-432 (435)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.7E-34 1.3E-38 296.5 40.2 313 126-515 114-443 (445)
62 4aow_A Guanine nucleotide-bind 100.0 1.1E-33 3.6E-38 281.2 38.7 297 152-545 17-330 (340)
63 2pm9_A Protein WEB1, protein t 100.0 1.2E-35 4.2E-40 304.0 25.0 329 127-515 64-415 (416)
64 3gre_A Serine/threonine-protei 100.0 1.4E-34 4.8E-39 298.7 33.0 341 136-545 33-433 (437)
65 2pm7_B Protein transport prote 100.0 3.4E-34 1.2E-38 280.3 33.8 254 125-427 4-285 (297)
66 4a11_B DNA excision repair pro 100.0 2.5E-34 8.5E-39 292.9 33.9 318 152-517 24-368 (408)
67 2pm7_B Protein transport prote 100.0 6.2E-34 2.1E-38 278.4 34.5 258 167-514 3-285 (297)
68 4gga_A P55CDC, cell division c 100.0 1.5E-33 5E-38 289.8 38.3 278 132-516 107-397 (420)
69 4aez_A CDC20, WD repeat-contai 100.0 1.1E-33 3.7E-38 288.9 37.1 279 133-516 96-382 (401)
70 3vl1_A 26S proteasome regulato 100.0 1.5E-34 5.1E-39 296.6 30.2 314 175-542 58-409 (420)
71 3dm0_A Maltose-binding peripla 100.0 2.6E-33 8.8E-38 306.7 37.8 282 167-545 376-686 (694)
72 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.9E-32 6.4E-37 283.6 40.5 310 163-544 108-430 (445)
73 3mkq_A Coatomer beta'-subunit; 100.0 7.5E-33 2.6E-37 308.3 38.4 352 126-540 51-487 (814)
74 1p22_A F-BOX/WD-repeat protein 100.0 6.9E-33 2.3E-37 286.1 35.2 286 127-516 130-416 (435)
75 3k26_A Polycomb protein EED; W 100.0 2.5E-33 8.7E-38 281.1 30.9 293 171-545 16-359 (366)
76 4ggc_A P55CDC, cell division c 100.0 3.8E-32 1.3E-36 267.3 37.9 274 134-514 29-315 (318)
77 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-32 6.5E-37 275.7 36.2 279 169-545 4-354 (372)
78 3zwl_B Eukaryotic translation 100.0 6.9E-32 2.4E-36 270.7 38.8 276 166-545 25-339 (369)
79 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-31 6.4E-36 261.6 40.2 273 164-544 9-288 (313)
80 3bg1_A Protein SEC13 homolog; 100.0 5.5E-34 1.9E-38 281.4 22.2 256 124-427 7-293 (316)
81 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-32 3.8E-37 273.7 31.4 309 168-516 6-339 (351)
82 3dw8_B Serine/threonine-protei 100.0 2.3E-32 7.7E-37 282.6 34.9 333 128-511 26-443 (447)
83 3v7d_B Cell division control p 100.0 9.5E-32 3.2E-36 279.7 39.4 311 165-545 113-456 (464)
84 3jrp_A Fusion protein of prote 100.0 1.8E-32 6.2E-37 276.3 32.7 261 125-434 6-294 (379)
85 3bg1_A Protein SEC13 homolog; 100.0 2.2E-33 7.6E-38 277.1 24.7 254 170-513 10-292 (316)
86 1sq9_A Antiviral protein SKI8; 100.0 3E-32 1E-36 277.1 32.7 298 167-545 10-388 (397)
87 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-33 4.1E-38 290.1 21.1 311 130-542 15-351 (588)
88 3f3f_A Nucleoporin SEH1; struc 100.0 7.3E-32 2.5E-36 267.8 33.1 276 126-435 7-345 (351)
89 3ei3_B DNA damage-binding prot 100.0 5.1E-32 1.7E-36 274.4 32.4 299 155-540 57-371 (383)
90 4a11_B DNA excision repair pro 100.0 1.6E-31 5.6E-36 272.1 35.6 326 126-514 39-405 (408)
91 2aq5_A Coronin-1A; WD40 repeat 100.0 3.2E-32 1.1E-36 278.0 28.9 290 133-516 37-344 (402)
92 3jrp_A Fusion protein of prote 100.0 1.4E-31 4.7E-36 269.8 33.0 256 165-513 3-286 (379)
93 4e54_B DNA damage-binding prot 100.0 1.7E-32 5.9E-37 283.1 26.9 298 165-542 111-421 (435)
94 1yfq_A Cell cycle arrest prote 100.0 1.4E-31 4.7E-36 266.3 32.2 286 127-512 8-322 (342)
95 3dwl_C Actin-related protein 2 100.0 2.1E-32 7.1E-37 276.5 25.4 251 168-513 6-280 (377)
96 4aez_A CDC20, WD repeat-contai 100.0 5.9E-31 2E-35 268.6 34.4 266 175-545 95-373 (401)
97 3i2n_A WD repeat-containing pr 100.0 1.8E-31 6.1E-36 266.9 29.0 280 229-545 17-346 (357)
98 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.3E-30 8E-35 268.4 38.3 289 131-514 5-391 (450)
99 3dw8_B Serine/threonine-protei 100.0 3.1E-31 1.1E-35 274.0 30.7 314 172-544 27-439 (447)
100 3mmy_A MRNA export factor; mRN 100.0 1.2E-30 4E-35 261.7 33.1 284 125-514 34-346 (368)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 4.4E-31 1.5E-35 269.6 28.6 279 175-541 36-333 (402)
102 2j04_B YDR362CP, TAU91; beta p 100.0 3E-31 1E-35 278.4 27.1 261 191-536 176-458 (524)
103 2xyi_A Probable histone-bindin 100.0 2.8E-30 9.7E-35 266.1 33.6 275 168-515 123-411 (430)
104 4h5i_A Guanine nucleotide-exch 100.0 5.4E-30 1.8E-34 258.0 34.6 289 173-544 14-335 (365)
105 4gga_A P55CDC, cell division c 100.0 1.2E-29 4.2E-34 260.5 36.5 257 123-434 140-402 (420)
106 1p22_A F-BOX/WD-repeat protein 100.0 2.8E-30 9.6E-35 266.5 31.8 263 171-545 131-407 (435)
107 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-29 5E-34 253.9 34.1 299 126-515 15-337 (355)
108 2xyi_A Probable histone-bindin 100.0 4.3E-30 1.5E-34 264.8 30.9 262 123-428 121-411 (430)
109 1yfq_A Cell cycle arrest prote 100.0 4.3E-30 1.5E-34 255.5 28.9 269 228-544 9-315 (342)
110 3jro_A Fusion protein of prote 100.0 1.4E-30 4.9E-35 287.0 24.5 257 125-430 4-288 (753)
111 3vu4_A KMHSV2; beta-propeller 100.0 4.8E-29 1.6E-33 250.1 32.1 278 155-546 3-330 (355)
112 3mmy_A MRNA export factor; mRN 100.0 5.3E-29 1.8E-33 249.6 32.3 271 228-542 37-336 (368)
113 1l0q_A Surface layer protein; 100.0 5.6E-28 1.9E-32 245.2 39.8 330 144-541 4-367 (391)
114 3jro_A Fusion protein of prote 100.0 1.8E-29 6.3E-34 278.2 28.9 255 167-514 3-285 (753)
115 2w18_A PALB2, fancn, partner a 100.0 8E-29 2.7E-33 239.4 29.0 276 135-512 44-355 (356)
116 3lrv_A PRE-mRNA-splicing facto 100.0 1.6E-29 5.4E-34 252.4 23.6 238 136-429 42-294 (343)
117 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.9E-28 1.7E-32 250.9 34.7 249 229-539 101-371 (450)
118 4ggc_A P55CDC, cell division c 100.0 8E-28 2.7E-32 236.3 34.2 251 123-428 60-316 (318)
119 4gq1_A NUP37; propeller, trans 100.0 3.7E-29 1.3E-33 254.6 25.4 308 174-546 16-384 (393)
120 3bws_A Protein LP49; two-domai 100.0 9.5E-28 3.3E-32 247.0 34.7 308 154-514 102-432 (433)
121 3lrv_A PRE-mRNA-splicing facto 100.0 5.5E-29 1.9E-33 248.4 24.6 236 188-516 48-294 (343)
122 2j04_A TAU60, YPL007P, hypothe 100.0 3.2E-29 1.1E-33 257.3 22.6 289 127-502 49-349 (588)
123 4gq1_A NUP37; propeller, trans 100.0 8.8E-29 3E-33 251.8 25.5 238 188-513 101-388 (393)
124 3bws_A Protein LP49; two-domai 100.0 8.5E-27 2.9E-31 239.9 31.2 273 230-544 122-424 (433)
125 1l0q_A Surface layer protein; 100.0 5.2E-26 1.8E-30 230.7 34.1 267 189-516 3-277 (391)
126 2w18_A PALB2, fancn, partner a 99.9 1.8E-25 6.1E-30 216.1 25.3 177 196-425 155-355 (356)
127 1nir_A Nitrite reductase; hemo 99.9 1.1E-23 3.7E-28 222.5 38.8 316 137-518 144-518 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.1E-23 3.7E-28 215.7 30.9 297 131-534 63-410 (415)
129 1k32_A Tricorn protease; prote 99.9 1.2E-22 4.2E-27 231.9 34.1 357 127-541 49-491 (1045)
130 2ecf_A Dipeptidyl peptidase IV 99.9 2E-22 6.8E-27 222.0 33.6 316 171-540 34-443 (741)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.7E-22 6E-27 206.7 28.9 243 124-429 111-389 (415)
132 1nir_A Nitrite reductase; hemo 99.9 4.6E-22 1.6E-26 210.1 32.7 300 178-540 142-497 (543)
133 2ecf_A Dipeptidyl peptidase IV 99.9 2E-22 7E-27 221.9 30.2 337 130-515 36-460 (741)
134 1k32_A Tricorn protease; prote 99.9 3.3E-22 1.1E-26 228.4 32.7 358 127-542 200-628 (1045)
135 3u4y_A Uncharacterized protein 99.9 8E-21 2.7E-25 187.7 34.7 283 136-517 3-307 (331)
136 1ri6_A Putative isomerase YBHE 99.9 6.2E-21 2.1E-25 189.0 33.9 273 144-513 6-307 (343)
137 1xfd_A DIP, dipeptidyl aminope 99.9 1.9E-22 6.4E-27 221.5 24.9 315 132-540 18-428 (723)
138 3vgz_A Uncharacterized protein 99.9 2E-20 6.7E-25 186.4 34.7 254 130-436 40-312 (353)
139 3vgz_A Uncharacterized protein 99.9 1.7E-20 5.8E-25 186.8 33.9 266 174-542 41-334 (353)
140 2ojh_A Uncharacterized protein 99.9 6E-21 2.1E-25 184.4 26.1 222 150-430 20-261 (297)
141 1ri6_A Putative isomerase YBHE 99.9 6.1E-20 2.1E-24 181.8 33.1 251 128-430 35-313 (343)
142 1pby_B Quinohemoprotein amine 99.9 2.7E-20 9.1E-25 183.9 28.9 268 143-516 2-312 (337)
143 2z3z_A Dipeptidyl aminopeptida 99.9 2.1E-20 7.2E-25 204.7 30.9 307 175-540 27-419 (706)
144 2z3z_A Dipeptidyl aminopeptida 99.9 4.6E-20 1.6E-24 202.0 32.9 288 131-516 82-437 (706)
145 3hfq_A Uncharacterized protein 99.9 1.1E-19 3.7E-24 181.1 31.9 261 128-431 37-323 (347)
146 2ojh_A Uncharacterized protein 99.9 8.9E-21 3E-25 183.2 22.9 236 127-417 38-292 (297)
147 3u4y_A Uncharacterized protein 99.9 3.1E-19 1.1E-23 176.3 31.5 255 188-542 10-293 (331)
148 2oit_A Nucleoporin 214KDA; NH2 99.9 3E-20 1E-24 190.9 24.2 237 147-428 19-279 (434)
149 3o4h_A Acylamino-acid-releasin 99.9 6.1E-20 2.1E-24 196.4 25.0 238 130-431 21-278 (582)
150 3scy_A Hypothetical bacterial 99.8 3.3E-18 1.1E-22 171.3 35.0 267 129-431 48-343 (361)
151 1xfd_A DIP, dipeptidyl aminope 99.8 8.3E-20 2.8E-24 200.4 24.1 268 175-540 18-378 (723)
152 3hfq_A Uncharacterized protein 99.8 2.7E-18 9.2E-23 170.9 32.1 277 151-513 16-316 (347)
153 1z68_A Fibroblast activation p 99.8 5.1E-20 1.8E-24 202.0 21.2 324 135-516 20-445 (719)
154 1pby_B Quinohemoprotein amine 99.8 7.9E-19 2.7E-23 173.3 27.7 241 132-436 35-319 (337)
155 2oit_A Nucleoporin 214KDA; NH2 99.8 6E-20 2.1E-24 188.6 19.9 219 230-515 36-279 (434)
156 1jmx_B Amine dehydrogenase; ox 99.8 1.6E-18 5.6E-23 172.0 28.4 247 135-436 4-334 (349)
157 3scy_A Hypothetical bacterial 99.8 3.4E-17 1.2E-21 163.9 36.2 276 152-513 28-336 (361)
158 3o4h_A Acylamino-acid-releasin 99.8 9.4E-19 3.2E-23 187.1 23.6 198 173-431 21-231 (582)
159 1jmx_B Amine dehydrogenase; ox 99.8 1.1E-17 3.7E-22 166.1 25.8 271 178-516 4-327 (349)
160 1z68_A Fibroblast activation p 99.8 3.7E-18 1.3E-22 187.2 23.5 300 177-539 19-427 (719)
161 4a5s_A Dipeptidyl peptidase 4 99.8 3.9E-17 1.3E-21 179.6 25.8 248 132-431 18-357 (740)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.3E-16 1.1E-20 157.2 29.6 271 152-515 15-342 (365)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.7E-16 5.9E-21 159.2 27.2 250 131-429 40-343 (365)
164 3pe7_A Oligogalacturonate lyas 99.8 7.6E-17 2.6E-21 162.8 23.1 238 136-432 41-334 (388)
165 3azo_A Aminopeptidase; POP fam 99.7 1E-15 3.4E-20 166.2 29.4 261 119-429 12-327 (662)
166 3pe7_A Oligogalacturonate lyas 99.7 5.4E-16 1.8E-20 156.5 25.2 216 157-431 16-277 (388)
167 3fvz_A Peptidyl-glycine alpha- 99.7 2.2E-15 7.6E-20 148.8 26.8 257 130-427 23-322 (329)
168 4a5s_A Dipeptidyl peptidase 4 99.7 9.2E-16 3.1E-20 168.7 25.6 201 175-429 18-296 (740)
169 1q7f_A NHL, brain tumor CG1071 99.7 1.1E-14 3.6E-19 140.6 29.8 238 129-428 28-281 (286)
170 1q7f_A NHL, brain tumor CG1071 99.7 5.5E-14 1.9E-18 135.6 31.7 242 174-514 30-280 (286)
171 2oiz_A Aromatic amine dehydrog 99.7 1.6E-14 5.4E-19 144.6 26.7 260 135-449 54-359 (361)
172 3c5m_A Oligogalacturonate lyas 99.7 4E-15 1.4E-19 150.3 21.8 234 156-431 15-277 (396)
173 3c5m_A Oligogalacturonate lyas 99.7 4.2E-15 1.4E-19 150.1 21.2 237 133-430 38-332 (396)
174 3fvz_A Peptidyl-glycine alpha- 99.7 4.2E-14 1.4E-18 139.6 27.0 245 229-515 22-323 (329)
175 3azo_A Aminopeptidase; POP fam 99.6 1.7E-14 5.6E-19 156.6 25.5 214 170-432 20-279 (662)
176 2gop_A Trilobed protease; beta 99.6 8E-14 2.8E-18 138.3 28.2 255 133-513 17-330 (347)
177 2oiz_A Aromatic amine dehydrog 99.6 1.3E-13 4.3E-18 138.0 27.6 283 151-496 31-358 (361)
178 2z2n_A Virginiamycin B lyase; 99.6 5.3E-12 1.8E-16 121.9 36.2 243 125-429 9-256 (299)
179 1qks_A Cytochrome CD1 nitrite 99.6 3.3E-11 1.1E-15 127.0 43.9 333 138-517 163-541 (567)
180 1rwi_B Serine/threonine-protei 99.6 2.6E-13 8.8E-18 129.5 25.1 239 132-429 25-266 (270)
181 2dg1_A DRP35, lactonase; beta 99.6 9.3E-13 3.2E-17 129.8 29.0 241 133-434 8-269 (333)
182 2xdw_A Prolyl endopeptidase; a 99.6 3.6E-13 1.2E-17 147.3 27.8 238 140-434 81-375 (710)
183 3e5z_A Putative gluconolactona 99.6 6.1E-13 2.1E-17 129.0 26.4 240 131-430 28-289 (296)
184 2xdw_A Prolyl endopeptidase; a 99.6 6E-13 2.1E-17 145.5 27.6 254 129-429 123-416 (710)
185 1rwi_B Serine/threonine-protei 99.6 1.3E-12 4.6E-17 124.4 25.2 239 175-516 25-266 (270)
186 3e5z_A Putative gluconolactona 99.6 1.8E-12 6.2E-17 125.6 26.5 212 165-434 19-252 (296)
187 2dg1_A DRP35, lactonase; beta 99.5 9.4E-12 3.2E-16 122.6 30.7 220 129-393 43-289 (333)
188 3dsm_A Uncharacterized protein 99.5 3E-12 1E-16 126.2 26.6 247 132-436 45-310 (328)
189 2bkl_A Prolyl endopeptidase; m 99.5 4.4E-13 1.5E-17 146.2 22.1 247 129-431 119-401 (695)
190 2gop_A Trilobed protease; beta 99.5 1.9E-12 6.6E-17 128.2 24.3 223 132-429 60-332 (347)
191 3no2_A Uncharacterized protein 99.5 8.9E-12 3E-16 119.4 26.9 241 141-437 4-262 (276)
192 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2.2E-11 7.4E-16 118.7 28.8 240 132-428 19-300 (314)
193 2bkl_A Prolyl endopeptidase; m 99.5 1.2E-12 4E-17 142.8 21.7 230 140-426 77-348 (695)
194 1qks_A Cytochrome CD1 nitrite 99.5 1.2E-10 4E-15 122.7 34.3 296 188-540 167-521 (567)
195 2qc5_A Streptogramin B lactona 99.4 7.6E-10 2.6E-14 106.6 35.1 238 128-426 17-259 (300)
196 2z2n_A Virginiamycin B lyase; 99.4 3.3E-10 1.1E-14 109.1 32.2 200 173-430 14-215 (299)
197 1yr2_A Prolyl oligopeptidase; 99.4 1.9E-11 6.5E-16 134.3 26.2 195 175-426 164-392 (741)
198 3dsm_A Uncharacterized protein 99.4 4.1E-11 1.4E-15 118.0 25.9 261 197-515 16-303 (328)
199 3sjl_D Methylamine dehydrogena 99.4 3.6E-11 1.2E-15 119.1 24.5 259 135-448 82-384 (386)
200 3no2_A Uncharacterized protein 99.4 2.7E-11 9.1E-16 116.1 22.9 191 188-436 5-204 (276)
201 2mad_H Methylamine dehydrogena 99.4 6.2E-10 2.1E-14 111.4 32.8 242 135-434 70-357 (373)
202 1yr2_A Prolyl oligopeptidase; 99.4 2.5E-11 8.7E-16 133.2 24.6 247 130-430 162-444 (741)
203 3hrp_A Uncharacterized protein 99.4 3.2E-10 1.1E-14 115.0 30.1 241 131-425 131-408 (409)
204 3g4e_A Regucalcin; six bladed 99.4 1E-09 3.4E-14 106.3 31.6 216 134-393 16-251 (297)
205 1xip_A Nucleoporin NUP159; bet 99.4 1.6E-11 5.5E-16 122.1 18.1 173 132-359 39-231 (388)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 5.1E-10 1.8E-14 108.8 28.5 245 172-514 16-299 (314)
207 1xip_A Nucleoporin NUP159; bet 99.4 5.5E-11 1.9E-15 118.3 21.3 171 175-393 39-223 (388)
208 3g4e_A Regucalcin; six bladed 99.3 2E-09 6.9E-14 104.2 29.1 207 175-436 14-238 (297)
209 2mad_H Methylamine dehydrogena 99.3 1.3E-08 4.4E-13 101.8 35.6 272 139-517 29-353 (373)
210 2qc5_A Streptogramin B lactona 99.3 7E-09 2.4E-13 99.8 32.2 199 173-429 19-219 (300)
211 3c75_H MADH, methylamine dehyd 99.3 4.9E-10 1.7E-14 113.0 24.6 243 135-434 122-409 (426)
212 3hrp_A Uncharacterized protein 99.3 1.5E-09 5.1E-14 110.1 28.4 202 174-431 131-358 (409)
213 3iuj_A Prolyl endopeptidase; h 99.3 6.2E-10 2.1E-14 121.1 26.7 247 129-431 127-409 (693)
214 3sjl_D Methylamine dehydrogena 99.3 3E-09 1E-13 105.4 28.7 277 136-516 38-365 (386)
215 2ghs_A AGR_C_1268P; regucalcin 99.2 1.2E-08 4.1E-13 100.1 30.3 212 134-393 52-281 (326)
216 2ghs_A AGR_C_1268P; regucalcin 99.2 2.7E-08 9.3E-13 97.6 30.5 200 176-433 51-265 (326)
217 3dr2_A Exported gluconolactona 99.2 5.2E-09 1.8E-13 101.6 24.8 224 133-418 47-298 (305)
218 1mda_H Methylamine dehydrogena 99.2 9.8E-10 3.3E-14 109.0 19.0 242 135-439 69-358 (368)
219 3q7m_A Lipoprotein YFGL, BAMB; 99.2 1.6E-07 5.5E-12 93.9 34.9 303 142-512 53-376 (376)
220 3dr2_A Exported gluconolactona 99.1 9.5E-09 3.2E-13 99.8 24.3 156 230-429 44-226 (305)
221 2qe8_A Uncharacterized protein 99.1 3.3E-09 1.1E-13 105.0 21.1 264 131-423 17-317 (343)
222 3c75_H MADH, methylamine dehyd 99.1 1.5E-08 5.1E-13 102.2 24.6 274 140-517 82-405 (426)
223 3hxj_A Pyrrolo-quinoline quino 99.1 7.9E-09 2.7E-13 101.1 20.3 301 135-516 24-326 (330)
224 1yiq_A Quinohemoprotein alcoho 99.1 6E-08 2E-12 105.0 28.4 311 143-496 71-528 (689)
225 3iuj_A Prolyl endopeptidase; h 99.1 9.4E-09 3.2E-13 111.8 21.8 200 175-429 130-361 (693)
226 2qe8_A Uncharacterized protein 99.1 3E-08 1E-12 98.0 23.5 214 174-430 17-281 (343)
227 1npe_A Nidogen, entactin; glyc 99.0 1.1E-06 3.9E-11 83.1 33.3 252 142-449 1-262 (267)
228 3q7m_A Lipoprotein YFGL, BAMB; 99.0 1.2E-07 4.1E-12 94.8 27.8 297 188-546 53-372 (376)
229 1kb0_A Quinohemoprotein alcoho 99.0 2E-07 7E-12 100.6 29.7 295 188-514 128-567 (677)
230 1yiq_A Quinohemoprotein alcoho 98.9 3.3E-07 1.1E-11 99.2 28.4 306 188-538 70-534 (689)
231 2hz6_A Endoplasmic reticulum t 98.9 2.1E-10 7.3E-15 114.7 1.8 195 188-438 9-203 (369)
232 2ece_A 462AA long hypothetical 98.9 2.2E-07 7.5E-12 92.7 22.7 244 235-540 86-399 (462)
233 4a2l_A BT_4663, two-component 98.9 2E-05 6.9E-10 86.9 40.7 326 130-516 262-616 (795)
234 2hz6_A Endoplasmic reticulum t 98.9 4.8E-10 1.6E-14 112.2 1.8 204 242-497 9-215 (369)
235 4a2l_A BT_4663, two-component 98.8 3.8E-05 1.3E-09 84.8 41.1 326 130-516 214-573 (795)
236 1kb0_A Quinohemoprotein alcoho 98.8 5.1E-07 1.8E-11 97.4 24.0 257 142-438 128-518 (677)
237 3hxj_A Pyrrolo-quinoline quino 98.8 9.7E-08 3.3E-12 93.3 16.7 283 188-545 30-317 (330)
238 1fwx_A Nitrous oxide reductase 98.8 3.3E-07 1.1E-11 94.7 21.0 226 241-542 100-408 (595)
239 1npe_A Nidogen, entactin; glyc 98.8 4E-05 1.4E-09 72.3 33.3 191 190-428 3-199 (267)
240 2fp8_A Strictosidine synthase; 98.8 6.6E-06 2.2E-10 80.2 27.9 240 131-428 19-314 (322)
241 2iwa_A Glutamine cyclotransfer 98.8 2.1E-06 7.2E-11 80.5 23.0 206 165-428 11-238 (266)
242 2ece_A 462AA long hypothetical 98.7 8.4E-06 2.9E-10 81.4 28.2 226 137-415 88-399 (462)
243 1mda_H Methylamine dehydrogena 98.7 4.8E-07 1.6E-11 89.6 19.3 253 152-516 47-348 (368)
244 3v9f_A Two-component system se 98.7 5.9E-05 2E-09 83.0 37.7 339 131-516 211-570 (781)
245 1fwx_A Nitrous oxide reductase 98.7 4.3E-07 1.5E-11 93.9 18.5 220 139-437 98-381 (595)
246 3v9f_A Two-component system se 98.7 0.0001 3.6E-09 81.0 37.7 327 130-516 257-613 (781)
247 1kv9_A Type II quinohemoprotei 98.6 3.8E-05 1.3E-09 82.7 31.6 266 188-485 117-499 (668)
248 2iwa_A Glutamine cyclotransfer 98.6 1.7E-05 5.7E-10 74.3 23.3 205 232-515 22-238 (266)
249 3nol_A Glutamine cyclotransfer 98.6 1.5E-05 5.3E-10 73.7 22.1 170 177-393 46-234 (262)
250 3v64_C Agrin; beta propeller, 98.5 0.00038 1.3E-08 68.4 32.8 245 133-435 36-283 (349)
251 1ijq_A LDL receptor, low-densi 98.5 0.00067 2.3E-08 65.7 34.1 239 143-435 2-246 (316)
252 2fp8_A Strictosidine synthase; 98.5 0.00017 5.9E-09 70.0 28.7 209 174-434 19-275 (322)
253 2ad6_A Methanol dehydrogenase 98.5 0.00017 5.7E-09 76.1 29.9 161 304-484 239-504 (571)
254 3v65_B Low-density lipoprotein 98.4 0.00038 1.3E-08 69.5 31.1 244 135-436 81-327 (386)
255 3nol_A Glutamine cyclotransfer 98.4 5.8E-05 2E-09 69.9 22.2 158 231-436 43-210 (262)
256 1flg_A Protein (quinoprotein e 98.4 0.0008 2.7E-08 71.0 33.8 162 304-485 250-527 (582)
257 3sov_A LRP-6, low-density lipo 98.4 0.00039 1.3E-08 67.4 28.6 240 143-436 5-247 (318)
258 1kv9_A Type II quinohemoprotei 98.4 5.7E-05 1.9E-09 81.3 24.5 255 142-437 117-498 (668)
259 1w6s_A Methanol dehydrogenase 98.4 0.00024 8.4E-09 74.9 28.5 168 304-485 245-514 (599)
260 3nok_A Glutaminyl cyclase; bet 98.4 7.2E-05 2.5E-09 69.2 21.1 169 177-393 58-244 (268)
261 3p5b_L Low density lipoprotein 98.3 0.0015 5.2E-08 65.4 32.7 241 142-436 83-329 (400)
262 2ad6_A Methanol dehydrogenase 98.3 0.00026 9E-09 74.6 27.5 116 309-438 311-505 (571)
263 3nok_A Glutaminyl cyclase; bet 98.3 0.00014 4.7E-09 67.4 21.8 158 231-436 55-219 (268)
264 2xe4_A Oligopeptidase B; hydro 98.3 0.00013 4.4E-09 79.8 25.6 134 232-393 175-329 (751)
265 3mbr_X Glutamine cyclotransfer 98.3 0.00023 7.9E-09 65.2 23.1 181 166-393 12-213 (243)
266 2p4o_A Hypothetical protein; p 98.3 0.00095 3.2E-08 64.2 28.1 222 131-392 32-263 (306)
267 1k3i_A Galactose oxidase precu 98.2 7.7E-05 2.6E-09 80.3 21.8 247 135-431 190-501 (656)
268 4hw6_A Hypothetical protein, I 98.2 0.00098 3.3E-08 67.6 28.8 236 131-426 139-432 (433)
269 3v64_C Agrin; beta propeller, 98.2 0.0044 1.5E-07 60.8 32.8 160 230-427 72-234 (349)
270 3mbr_X Glutamine cyclotransfer 98.2 0.00041 1.4E-08 63.6 23.1 160 230-436 20-188 (243)
271 3v65_B Low-density lipoprotein 98.2 0.0038 1.3E-07 62.2 31.4 183 194-427 92-277 (386)
272 3qqz_A Putative uncharacterize 98.2 0.0034 1.2E-07 58.3 27.9 212 131-370 27-251 (255)
273 2xzh_A Clathrin heavy chain 1; 98.1 0.0034 1.1E-07 59.5 27.2 241 136-431 72-336 (365)
274 3tc9_A Hypothetical hydrolase; 98.1 0.0016 5.5E-08 66.0 27.6 237 131-426 137-429 (430)
275 2xe4_A Oligopeptidase B; hydro 98.1 0.00086 3E-08 73.2 27.0 114 132-262 175-304 (751)
276 1k3i_A Galactose oxidase precu 98.1 0.00015 5.2E-09 78.0 20.2 206 175-430 187-444 (656)
277 1w6s_A Methanol dehydrogenase 98.1 0.0012 4.3E-08 69.5 26.4 113 309-437 318-513 (599)
278 3m0c_C LDL receptor, low-densi 98.1 0.006 2.1E-07 66.4 32.3 239 143-435 396-640 (791)
279 3p5b_L Low density lipoprotein 98.0 0.013 4.5E-07 58.6 32.1 191 191-428 85-278 (400)
280 1ijq_A LDL receptor, low-densi 98.0 0.011 3.6E-07 57.1 33.1 186 195-427 7-195 (316)
281 1flg_A Protein (quinoprotein e 98.0 0.0027 9.1E-08 67.0 27.5 114 309-438 331-527 (582)
282 2xbg_A YCF48-like protein; pho 98.0 0.011 3.8E-07 57.3 30.1 216 131-393 36-259 (327)
283 3qqz_A Putative uncharacterize 98.0 0.0029 1E-07 58.7 24.3 168 230-436 26-212 (255)
284 2p4o_A Hypothetical protein; p 98.0 0.013 4.3E-07 56.2 30.0 154 231-427 32-198 (306)
285 1bpo_A Protein (clathrin); cla 98.0 0.016 5.6E-07 57.1 30.6 243 135-432 70-336 (494)
286 3sov_A LRP-6, low-density lipo 97.9 0.017 5.9E-07 55.7 29.6 185 195-427 10-197 (318)
287 3kya_A Putative phosphatase; s 97.9 0.0075 2.6E-07 61.5 27.7 258 132-434 140-482 (496)
288 4a0p_A LRP6, LRP-6, low-densit 97.9 0.025 8.6E-07 60.0 31.9 235 142-434 6-244 (628)
289 3amr_A 3-phytase; beta-propell 97.8 0.0079 2.7E-07 58.0 24.8 205 188-435 40-272 (355)
290 4hw6_A Hypothetical protein, I 97.8 0.013 4.6E-07 59.1 27.9 200 175-429 140-375 (433)
291 3ei3_A DNA damage-binding prot 97.8 0.067 2.3E-06 60.8 35.7 118 131-262 514-636 (1158)
292 2ism_A Putative oxidoreductase 97.8 0.0087 3E-07 58.7 24.6 238 131-393 31-324 (352)
293 1n7d_A LDL receptor, low-densi 97.7 0.00017 5.7E-09 77.9 11.4 239 144-436 379-623 (699)
294 3tc9_A Hypothetical hydrolase; 97.6 0.002 6.8E-08 65.3 18.3 155 231-427 137-301 (430)
295 3kya_A Putative phosphatase; s 97.6 0.053 1.8E-06 55.2 28.5 164 175-371 140-340 (496)
296 3m0c_C LDL receptor, low-densi 97.6 0.11 3.9E-06 56.4 33.7 166 230-429 423-591 (791)
297 3a9g_A Putative uncharacterize 97.6 0.046 1.6E-06 53.5 27.3 238 131-393 29-321 (354)
298 3s94_A LRP-6, low-density lipo 97.6 0.021 7.3E-07 60.5 25.5 236 143-433 10-249 (619)
299 3sre_A PON1, serum paraoxonase 97.5 0.08 2.7E-06 51.6 27.0 200 133-371 52-297 (355)
300 2xbg_A YCF48-like protein; pho 97.5 0.031 1.1E-06 54.1 23.8 234 130-425 79-320 (327)
301 3amr_A 3-phytase; beta-propell 97.5 0.027 9.2E-07 54.3 22.1 211 141-380 39-272 (355)
302 2vpj_A Kelch-like protein 12; 97.4 0.0088 3E-07 57.0 19.1 105 310-431 159-282 (301)
303 2p9w_A MAL S 1 allergenic prot 97.4 0.0075 2.6E-07 57.7 16.7 163 232-427 14-215 (334)
304 2p9w_A MAL S 1 allergenic prot 97.3 0.12 3.9E-06 49.5 25.0 177 169-373 8-216 (334)
305 3das_A Putative oxidoreductase 97.3 0.13 4.4E-06 49.9 26.2 236 131-393 32-317 (347)
306 4a0p_A LRP6, LRP-6, low-densit 97.3 0.27 9.4E-06 52.0 32.7 244 142-435 308-557 (628)
307 1n7d_A LDL receptor, low-densi 97.3 0.0019 6.5E-08 69.7 12.9 220 131-391 406-633 (699)
308 3ii7_A Kelch-like protein 7; p 97.2 0.018 6.1E-07 55.0 18.5 105 310-431 149-276 (306)
309 3sre_A PON1, serum paraoxonase 97.2 0.16 5.3E-06 49.5 24.9 167 196-393 81-275 (355)
310 3s94_A LRP-6, low-density lipo 97.2 0.33 1.1E-05 51.3 29.7 232 142-429 317-553 (619)
311 2xn4_A Kelch-like protein 2; s 97.1 0.022 7.6E-07 54.2 17.4 105 310-431 155-280 (302)
312 4asc_A Kelch repeat and BTB do 96.9 0.14 4.8E-06 48.9 21.8 107 310-433 148-283 (315)
313 2g8s_A Glucose/sorbosone dehyd 96.9 0.38 1.3E-05 46.9 26.2 60 173-241 17-76 (353)
314 1zgk_A Kelch-like ECH-associat 96.8 0.11 3.7E-06 49.5 19.7 106 310-432 168-292 (308)
315 1cru_A Protein (soluble quinop 96.7 0.65 2.2E-05 46.9 27.8 112 132-249 28-161 (454)
316 2ism_A Putative oxidoreductase 96.6 0.56 1.9E-05 45.6 26.8 82 166-261 23-113 (352)
317 3pbp_A Nucleoporin NUP82; beta 96.6 0.28 9.7E-06 48.3 20.7 167 138-326 28-208 (452)
318 3a9g_A Putative uncharacterize 96.6 0.61 2.1E-05 45.4 26.7 76 173-262 28-114 (354)
319 1xi4_A Clathrin heavy chain; a 96.6 0.1 3.4E-06 59.2 19.2 241 137-432 72-336 (1630)
320 2g8s_A Glucose/sorbosone dehyd 96.6 0.62 2.1E-05 45.3 24.4 242 132-393 19-332 (353)
321 2vpj_A Kelch-like protein 12; 96.5 0.54 1.9E-05 44.3 22.4 105 310-431 112-235 (301)
322 3ei3_A DNA damage-binding prot 96.5 1.7 5.7E-05 49.5 39.7 172 322-515 808-1000(1158)
323 2woz_A Kelch repeat and BTB do 96.4 0.32 1.1E-05 46.4 20.2 106 310-432 158-292 (318)
324 2xzh_A Clathrin heavy chain 1; 96.4 0.73 2.5E-05 43.8 34.9 231 141-435 35-298 (365)
325 2uvk_A YJHT; unknown function, 96.3 0.17 5.7E-06 49.3 17.6 111 310-435 200-350 (357)
326 3pbp_A Nucleoporin NUP82; beta 96.2 0.075 2.6E-06 52.4 14.1 124 132-259 67-209 (452)
327 3ii7_A Kelch-like protein 7; p 95.9 1 3.5E-05 42.5 20.8 103 310-429 101-227 (306)
328 2xn4_A Kelch-like protein 2; s 95.9 0.13 4.4E-06 48.8 14.1 64 310-375 204-279 (302)
329 1bpo_A Protein (clathrin); cla 95.9 1.6 5.3E-05 43.3 36.4 231 141-435 34-297 (494)
330 1tl2_A L10, protein (tachylect 95.7 0.066 2.2E-06 47.8 10.1 96 311-425 4-114 (236)
331 3das_A Putative oxidoreductase 95.6 1.8 6.2E-05 41.8 26.8 159 173-359 31-219 (347)
332 1tl2_A L10, protein (tachylect 95.4 0.24 8.2E-06 44.2 12.5 112 231-368 41-159 (236)
333 4asc_A Kelch repeat and BTB do 95.3 0.28 9.6E-06 46.7 14.0 64 310-375 196-280 (315)
334 1zgk_A Kelch-like ECH-associat 95.2 0.22 7.5E-06 47.4 12.9 63 310-374 215-289 (308)
335 3ott_A Two-component system se 95.0 5 0.00017 43.3 37.0 219 131-393 63-288 (758)
336 2uvk_A YJHT; unknown function, 94.5 0.24 8.2E-06 48.1 11.5 55 322-378 286-348 (357)
337 2woz_A Kelch repeat and BTB do 94.2 1 3.6E-05 42.7 15.0 65 310-376 206-291 (318)
338 4gq2_M Nucleoporin NUP120; bet 94.1 3.5 0.00012 45.9 20.7 178 152-337 83-273 (950)
339 3ott_A Two-component system se 93.5 9.8 0.00033 41.0 32.6 254 131-431 324-590 (758)
340 2zwa_A Leucine carboxyl methyl 92.6 4.4 0.00015 43.3 18.1 201 140-376 396-639 (695)
341 1cru_A Protein (soluble quinop 92.4 9.9 0.00034 38.1 27.5 68 172-250 25-98 (454)
342 1xi4_A Clathrin heavy chain; a 91.9 5.9 0.0002 45.4 18.0 218 130-375 105-334 (1630)
343 3s25_A Hypothetical 7-bladed b 90.7 11 0.00038 35.4 25.2 174 140-374 23-218 (302)
344 2wg3_C Hedgehog-interacting pr 89.4 19 0.00065 36.2 26.7 115 131-250 14-157 (463)
345 2be1_A Serine/threonine-protei 89.3 0.55 1.9E-05 45.2 6.2 118 312-437 11-140 (339)
346 2zwa_A Leucine carboxyl methyl 88.5 25 0.00087 37.3 19.4 109 309-431 499-639 (695)
347 3s25_A Hypothetical 7-bladed b 86.3 22 0.00074 33.3 24.2 71 305-380 109-184 (302)
348 3f7f_A Nucleoporin NUP120; nuc 83.9 41 0.0014 35.6 17.2 187 140-338 63-258 (729)
349 3sbq_A Nitrous-oxide reductase 83.4 8.3 0.00029 39.4 11.2 92 322-428 299-409 (638)
350 4fhn_B Nucleoporin NUP120; pro 81.6 17 0.00057 41.3 14.5 37 301-337 239-275 (1139)
351 2be1_A Serine/threonine-protei 81.0 6.5 0.00022 37.7 9.3 119 354-483 11-139 (339)
352 2wg3_C Hedgehog-interacting pr 79.9 28 0.00096 34.9 14.0 106 300-418 14-160 (463)
353 3sbq_A Nitrous-oxide reductase 79.1 6.4 0.00022 40.3 8.7 116 231-360 323-453 (638)
354 3b7f_A Glycosyl hydrolase, BNR 77.6 53 0.0018 31.7 18.3 75 175-258 178-258 (394)
355 3no0_A DNA gyrase subunit A; D 75.9 49 0.0017 30.4 20.3 201 140-372 34-246 (276)
356 3qhy_B Beta-lactamase inhibito 74.2 54 0.0018 30.2 21.0 221 133-427 26-246 (282)
357 1suu_A DNA gyrase subunit A; t 65.1 91 0.0031 29.2 23.8 203 188-427 8-231 (312)
358 3uc1_A DNA gyrase subunit A; D 54.8 1.4E+02 0.0048 28.1 25.1 209 139-372 51-279 (327)
359 4fhn_B Nucleoporin NUP120; pro 50.4 3.2E+02 0.011 30.8 18.3 37 343-379 239-275 (1139)
360 1xks_A Nuclear pore complex pr 47.4 2.2E+02 0.0076 28.1 18.8 177 134-331 41-238 (450)
361 4a9v_A PHOX; hydrolase, beta-p 47.2 87 0.003 32.2 9.8 61 300-360 476-549 (592)
362 3uc1_A DNA gyrase subunit A; D 47.2 1.9E+02 0.0064 27.2 21.2 198 189-426 4-227 (327)
363 3f7f_A Nucleoporin NUP120; nuc 47.1 25 0.00087 37.1 6.0 28 409-436 232-259 (729)
364 3zwu_A Alkaline phosphatase PH 45.3 73 0.0025 32.9 9.1 59 301-359 477-548 (592)
365 3qhy_B Beta-lactamase inhibito 41.7 2E+02 0.007 26.1 23.9 167 197-427 41-207 (282)
366 3b7f_A Glycosyl hydrolase, BNR 41.2 2.4E+02 0.0083 26.8 19.3 67 301-367 116-203 (394)
367 1wp5_A Topoisomerase IV; broke 39.7 2.4E+02 0.0082 26.4 23.3 159 188-372 5-174 (323)
368 1zi0_A DNA gyrase subunit A; b 38.3 2.4E+02 0.0084 26.0 23.3 203 188-426 3-225 (307)
369 4hvt_A Ritya.17583.B, post-pro 37.3 4E+02 0.014 28.2 24.2 55 361-429 318-383 (711)
370 3q6k_A 43.2 kDa salivary prote 31.8 3.5E+02 0.012 26.0 25.3 202 131-359 87-341 (381)
371 3kci_A Probable E3 ubiquitin-p 30.6 3.6E+02 0.012 25.7 30.5 256 189-514 63-345 (389)
372 3q6k_A 43.2 kDa salivary prote 30.3 3.8E+02 0.013 25.8 26.0 131 230-372 151-306 (381)
373 4gq2_M Nucleoporin NUP120; bet 28.6 6.2E+02 0.021 27.7 26.6 37 343-379 237-273 (950)
374 3mvd_K Regulator of chromosome 23.8 4.9E+02 0.017 25.0 24.8 28 487-514 347-374 (423)
375 1zi0_A DNA gyrase subunit A; b 22.3 4.6E+02 0.016 24.1 23.7 175 173-372 94-277 (307)
376 4hvt_A Ritya.17583.B, post-pro 20.5 7.6E+02 0.026 25.9 24.5 97 319-429 318-431 (711)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.2e-44 Score=384.89 Aligned_cols=364 Identities=15% Similarity=0.173 Sum_probs=288.9
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC----Cc
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS----GD 199 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d----g~ 199 (548)
.+.+|...|.+++|+|+|++|++++.| +|+|||+..+.......+..+...+.+++|+|+ +.+|++++.+ +.
T Consensus 54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~d---g~~l~~~~~~~~~~~~ 130 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE---SKRIAAVGEGRERFGH 130 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT---SCEEEEEECCSSCSEE
T ss_pred EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCC---CCEEEEEECCCCceeE
Confidence 356899999999999999999999888 999999976543345567778899999999999 7788888765 47
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
|++||.... .. ....|...|++++|+|++..+|++++.|++|++||...
T Consensus 131 v~~wd~~~~----~~----------~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~----------------- 179 (611)
T 1nr0_A 131 VFLFDTGTS----NG----------NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP----------------- 179 (611)
T ss_dssp EEETTTCCB----CB----------CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-----------------
T ss_pred EEEeeCCCC----cc----------eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC-----------------
Confidence 888875431 01 11248999999999999875799999999999999764
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-------ecCCceEEEEEccC
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-------SYYGALLCCAWSMD 352 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-------~~~~~v~~l~~spd 352 (548)
.+.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. +|.+.|.+++|+|+
T Consensus 180 ---------~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd 250 (611)
T 1nr0_A 180 ---------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD 250 (611)
T ss_dssp ---------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred ---------CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC
Confidence 23356678899999999999999999999999999999999999888774 79999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEE-------------------------------------------eccCCCCCeEEE
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKVVA-------------------------------------------WGEGHNSWVSGV 389 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~~~-------------------------------------------~~~~h~~~V~~v 389 (548)
+++|++++.|+.|++||+++++++. .+.+|...|+++
T Consensus 251 g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l 330 (611)
T 1nr0_A 251 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITAL 330 (611)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEE
Confidence 9999999999999999998876543 345799999999
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC--CCCCC-------------------------
Q 008939 390 AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG--PLGGS------------------------- 442 (548)
Q Consensus 390 ~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~--~~~~~------------------------- 442 (548)
+|+| || .+|++++.|+.|++||+.++++...+... ..+..
T Consensus 331 ~~sp-------dg------~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~ 397 (611)
T 1nr0_A 331 SSSA-------DG------KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 397 (611)
T ss_dssp EECT-------TS------SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSS
T ss_pred EEeC-------CC------CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCC
Confidence 9999 99 79999999999999999988765543110 00111
Q ss_pred -------------------ceecCCCCc------------------------------ccc-CCeeeecccCCCCceeec
Q 008939 443 -------------------PTFSTGSQS------------------------------AHW-DNVCPVGTLQPAPSMRDV 472 (548)
Q Consensus 443 -------------------~~~~~~~~~------------------------------~~~-d~~~~~g~~~~~~~~~d~ 472 (548)
+.+++++.. ... ...+..+..++.+++||+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~ 477 (611)
T 1nr0_A 398 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKL 477 (611)
T ss_dssp SSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEE
T ss_pred ccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEc
Confidence 112222200 001 234577788889999998
Q ss_pred CCCCc--eEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC-CCcc---cc-CCCCcEE--EecCCCCceEeeec
Q 008939 473 PKLSP--LVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG-VAES---QS-SSSETVL--STSSKDKPLLSSKV 541 (548)
Q Consensus 473 ~~~~~--~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~-~~~~---~~-~~~~~v~--~~s~d~~~l~s~~~ 541 (548)
..... +.. .+|...|++|+|+||+ |++++.|++|++|++.. .... .. .|...|. +|+||+++|+++..
T Consensus 478 ~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~ 556 (611)
T 1nr0_A 478 SGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 556 (611)
T ss_dssp ETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred cCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEEC
Confidence 76432 333 6899999999999984 99999999999999876 3321 12 3777787 88999999999987
Q ss_pred cccc
Q 008939 542 VTSS 545 (548)
Q Consensus 542 ~g~~ 545 (548)
.+.+
T Consensus 557 D~~v 560 (611)
T 1nr0_A 557 DNSV 560 (611)
T ss_dssp TSCE
T ss_pred CCcE
Confidence 7654
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-42 Score=374.35 Aligned_cols=326 Identities=13% Similarity=0.141 Sum_probs=271.8
Q ss_pred CCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
.+.+.+..++|+|+|++|+++.++.++||++.++. .+..+..|...+++++|+|+ +.+|++|+.||.|+|||+.+
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~--~~~~~~~h~~~v~~~~~spd---g~~lasg~~d~~v~lWd~~~ 90 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLT--DTEIYTEHSHQTTVAKTSPS---GYYCASGDVHGNVRIWDTTQ 90 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSS--CCEEECCCSSCEEEEEECTT---SSEEEEEETTSEEEEEESSS
T ss_pred cccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcc--cCeEecCCCCceEEEEECCC---CcEEEEEeCCCCEEEeECCC
Confidence 34566778999999999999988899999998744 77888889999999999999 88999999999999999864
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC----CcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD----GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
.. ..+.... ..|...|.+++|+|++. .|++++.+ +.|++||...
T Consensus 91 ~~----~~~~~~~------~~~~~~v~~v~fs~dg~-~l~~~~~~~~~~~~v~~wd~~~--------------------- 138 (611)
T 1nr0_A 91 TT----HILKTTI------PVFSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGT--------------------- 138 (611)
T ss_dssp TT----CCEEEEE------ECSSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTCC---------------------
T ss_pred Cc----ceeeEee------cccCCceEEEEECCCCC-EEEEEECCCCceeEEEEeeCCC---------------------
Confidence 11 1111111 13788999999999999 77777654 4788887432
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
.+..+.+|...|++++|+|++. .|++++.|+.|++||..+++++..+.+|...|.+++|+||+++|++|+.|
T Consensus 139 -------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D 211 (611)
T 1nr0_A 139 -------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211 (611)
T ss_dssp -------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred -------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECC
Confidence 2334567889999999999986 69999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCceeEEecc-------CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 363 DLVQVWSMEDRKVVAWGE-------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 363 g~I~vwd~~~~~~~~~~~-------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
+.|++||+.+++++..+. +|...|.+++|+| || .+|++++.|+.|++||+++++++..+.
T Consensus 212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-------dg------~~l~s~s~D~~v~lWd~~~~~~~~~~~ 278 (611)
T 1nr0_A 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-------DG------TKIASASADKTIKIWNVATLKVEKTIP 278 (611)
T ss_dssp SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-------TS------SEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-------CC------CEEEEEeCCCeEEEEeCCCCceeeeec
Confidence 999999999999888874 7999999999999 99 799999999999999999999988876
Q ss_pred cCCCCCC--ceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 436 RGPLGGS--PTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 436 ~~~~~~~--~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
....... ..+.. ....+..+..++.+++|+.....+...+.+|...|++++|+|++ |++++.|++|++||
T Consensus 279 ~~~~~~~~~~~~~~------~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd 352 (611)
T 1nr0_A 279 VGTRIEDQQLGIIW------TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWD 352 (611)
T ss_dssp CCSSGGGCEEEEEE------CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCccceeEEEEE------cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence 5322111 11111 12445677788899999998888888889999999999999974 99999999999999
Q ss_pred CCCCC
Q 008939 512 RPGVA 516 (548)
Q Consensus 512 ~~~~~ 516 (548)
+.++.
T Consensus 353 ~~~~~ 357 (611)
T 1nr0_A 353 ISTGI 357 (611)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 87543
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-42 Score=342.74 Aligned_cols=286 Identities=17% Similarity=0.267 Sum_probs=249.4
Q ss_pred cCCCCCCceeEEeCCC----CCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 126 ASSSSTSMTNTNFDGK----GTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~----g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
..+|.+.|.+++|+++ +.+|++++.| +|+||++..+.......+..|...+.+++|+++ +..+++++.|+.|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~---~~~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT---LPIAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS---SSEEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC---CCEEEEEeCCCcE
Confidence 4579999999999875 6689998888 999999987543344567778999999999998 7799999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
++||+++ ++.+.. .. .+...+.+++|+|+++ +|++++.||.|++||++..
T Consensus 105 ~lWd~~~-----~~~~~~-~~------~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~----------------- 154 (321)
T 3ow8_A 105 RLWDLEN-----GKQIKS-ID------AGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESG----------------- 154 (321)
T ss_dssp EEEETTT-----TEEEEE-EE------CCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTC-----------------
T ss_pred EEEECCC-----CCEEEE-Ee------CCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCC-----------------
Confidence 9999876 222221 11 2567889999999999 9999999999999999862
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
.....+..|...|.+++|+|++++|++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++|+
T Consensus 155 ---------~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s 225 (321)
T 3ow8_A 155 ---------KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225 (321)
T ss_dssp ---------SEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC
T ss_pred ---------ceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc
Confidence 33455667778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCC
Q 008939 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG 440 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~ 440 (548)
.|+.|++||+++++.+..+.+|...|.+++|+| ++ .+|++++.|+.|++||+++++++..+
T Consensus 226 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-------~~------~~l~s~s~D~~v~iwd~~~~~~~~~~------ 286 (321)
T 3ow8_A 226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-------DD------THFVSSSSDKSVKVWDVGTRTCVHTF------ 286 (321)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-------TS------SEEEEEETTSCEEEEETTTTEEEEEE------
T ss_pred CCCeEEEEECCCcceeEEEcCCCCceEEEEECC-------CC------CEEEEEeCCCcEEEEeCCCCEEEEEE------
Confidence 999999999999999999999999999999999 88 78999999999999999988876543
Q ss_pred CCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCC
Q 008939 441 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 441 ~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~ 513 (548)
.+|.+.|.+++|+|+ .|++++.||.|+|||.+
T Consensus 287 -----------------------------------------~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 287 -----------------------------------------FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp -----------------------------------------CCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred -----------------------------------------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 358899999999997 49999999999999975
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-42 Score=353.69 Aligned_cols=285 Identities=19% Similarity=0.309 Sum_probs=255.2
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
....+|..+|++++|+|++.++++++.| .|+|||+.++. .+..+..|...|.+++|+|+ +.+|++|+.||.|++
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~--~~~~l~~h~~~V~~v~~~~~---~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERTLKGHTDSVQDISFDHS---GKLLASCSADMTIKL 176 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC--CCEEECCCSSCEEEEEECTT---SSEEEEEETTSCCCE
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEEeccCCcEEEEEEcCC---CCEEEEEeCCCeEEE
Confidence 3466899999999999999999999888 99999999855 88889999999999999998 789999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
||+... + .... ...|...|++++|+|++. +|++|+.|+.|++||+++
T Consensus 177 wd~~~~-----~-~~~~------~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~-------------------- 223 (410)
T 1vyh_C 177 WDFQGF-----E-CIRT------MHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQT-------------------- 223 (410)
T ss_dssp EETTSS-----C-EEEC------CCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTT--------------------
T ss_pred EeCCCC-----c-eeEE------EcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCC--------------------
Confidence 998751 1 2111 124889999999999998 999999999999999986
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC----------
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD---------- 352 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd---------- 352 (548)
...+..+..|...|.++.|+|++++|++++.|+.|++||+.++++...+..|...|.+++|+|+
T Consensus 224 ------~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 297 (410)
T 1vyh_C 224 ------GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 297 (410)
T ss_dssp ------CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred ------CcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc
Confidence 2456778889999999999999999999999999999999999999999999999999999996
Q ss_pred ----------CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEE
Q 008939 353 ----------GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLL 422 (548)
Q Consensus 353 ----------g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~l 422 (548)
+.+|++|+.|+.|++||+++++++..+.+|..+|.+++|+| +| .+|++++.|+.|++
T Consensus 298 ~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-------~g------~~l~s~s~D~~i~v 364 (410)
T 1vyh_C 298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-------GG------KFILSCADDKTLRV 364 (410)
T ss_dssp SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-------SS------SCEEEEETTTEEEE
T ss_pred cccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC-------CC------CEEEEEeCCCeEEE
Confidence 67899999999999999999999999999999999999999 88 78999999999999
Q ss_pred EECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEE
Q 008939 423 WDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLT 500 (548)
Q Consensus 423 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t 500 (548)
||+.+++++. .+.+|...|++++|+|+ .|++
T Consensus 365 wd~~~~~~~~-----------------------------------------------~~~~h~~~v~~l~~~~~~~~l~s 397 (410)
T 1vyh_C 365 WDYKNKRCMK-----------------------------------------------TLNAHEHFVTSLDFHKTAPYVVT 397 (410)
T ss_dssp ECCTTSCCCE-----------------------------------------------EEECCSSCEEEEEECSSSSCEEE
T ss_pred EECCCCceEE-----------------------------------------------EEcCCCCcEEEEEEcCCCCEEEE
Confidence 9998766443 34468999999999997 4999
Q ss_pred EECCCeEEEEeC
Q 008939 501 VCREGHIKIWMR 512 (548)
Q Consensus 501 ~s~Dg~I~iW~~ 512 (548)
++.||+|++|++
T Consensus 398 gs~D~~i~vW~~ 409 (410)
T 1vyh_C 398 GSVDQTVKVWEC 409 (410)
T ss_dssp EETTSEEEEEC-
T ss_pred EeCCCcEEEEeC
Confidence 999999999986
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.3e-41 Score=360.95 Aligned_cols=350 Identities=19% Similarity=0.285 Sum_probs=299.6
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
..+|...+.+++|+|++.++++++.+ .|++||.. .+.+..+..+...+.+++|+|+ +..|++++.|+.|++||
T Consensus 217 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~---~~~~~~~~~~~~~v~~v~~~~d---~~~l~~~~~d~~i~~w~ 290 (577)
T 2ymu_A 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVNGVAFRPD---GQTIASASDDKTVKLWN 290 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT---SCEEEEECCCSSCEEEEEECTT---SSEEEEEETTSCEEEEE
T ss_pred EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC---CCEEEEEecCCCCEEEEEEcCC---CCEEEEEeCCCEEEEEe
Confidence 45788999999999999999998877 99999975 3477888889999999999998 88999999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
... +.+ ... ..|...|.+++|+|++. .|++++.|+.|++||+..
T Consensus 291 ~~~------~~~-~~~------~~h~~~v~~~~~~~~~~-~l~t~~~d~~i~~w~~~~---------------------- 334 (577)
T 2ymu_A 291 RNG------QLL-QTL------TGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNG---------------------- 334 (577)
T ss_dssp TTS------CEE-EEE------CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTS----------------------
T ss_pred CCC------cEE-EEE------ecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCC----------------------
Confidence 654 111 111 13788999999999999 999999999999999764
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
..+..+..|...|.+++|+|++++|++++.|+.|++||. +++++..+..|...|.+++|+||+++|++++.|+.
T Consensus 335 -----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 335 -----QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp -----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred -----CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE
Confidence 234556778899999999999999999999999999996 57788888999999999999999999999999999
Q ss_pred EEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec-CCCCCCc
Q 008939 365 VQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR-GPLGGSP 443 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~ 443 (548)
|++||. +++.+..+.+|...|.+++|+| |+ .+|++++.|+.|++||+. ++++..+.. ...+..+
T Consensus 409 v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-------d~------~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~ 473 (577)
T 2ymu_A 409 VKLWNR-NGQLLQTLTGHSSSVWGVAFSP-------DD------QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGV 473 (577)
T ss_dssp EEEECT-TCCEEEEEECCSSCEEEEEECT-------TS------SEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEE
T ss_pred EEEEeC-CCCEEEEecCCCCCeEEEEECC-------CC------CEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEE
Confidence 999995 5778888999999999999999 88 799999999999999974 555655554 3556778
Q ss_pred eecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCc-ccc
Q 008939 444 TFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAE-SQS 520 (548)
Q Consensus 444 ~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~-~~~ 520 (548)
+|++++ ..+..+..+..+++|+. ..+++..+.+|...|++|+|+|++ |++++.||.|++||+++... ...
T Consensus 474 ~~spd~------~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~ 546 (577)
T 2ymu_A 474 AFSPDG------QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 546 (577)
T ss_dssp EECTTS------CEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEE
T ss_pred EEcCCC------CEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEc
Confidence 888876 45677888889999994 678889999999999999999984 99999999999999865442 334
Q ss_pred CCCCcEE--EecCCCCceEeeeccccc
Q 008939 521 SSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 521 ~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
.|...|. +|+||+++|+++...+.+
T Consensus 547 ~h~~~v~~~~fs~dg~~l~s~~~D~~i 573 (577)
T 2ymu_A 547 GHSSSVWGVAFSPDGQTIASASSDKTV 573 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 7888887 789999999999887765
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.4e-40 Score=332.22 Aligned_cols=287 Identities=12% Similarity=0.145 Sum_probs=249.9
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
..+.+|...|.+++|+|+++++++++.| .|+|||+.++. .+..+..+...+.+++|+|+ +.+|++|+.|+.|++
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~--~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~d~~v~i 123 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN--KVHAIPLRSSWVMTCAYAPS---GNYVACGGLDNICSI 123 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC--EEEEEECSSSCEEEEEECTT---SSEEEEEETTCEEEE
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC--cceEeecCCccEEEEEECCC---CCEEEEEeCCCeEEE
Confidence 3466899999999999999999999888 99999999854 88888889999999999998 889999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|++.... ........ ...|...|.++.|++++ .|++++.|+.|++||+.+
T Consensus 124 w~~~~~~--~~~~~~~~------~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~-------------------- 173 (340)
T 1got_B 124 YNLKTRE--GNVRVSRE------LAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIET-------------------- 173 (340)
T ss_dssp EETTTCS--BSCEEEEE------EECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTT--------------------
T ss_pred EECccCC--CcceeEEE------ecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCC--------------------
Confidence 9987521 11111111 12488999999999987 489999999999999986
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
...+..+..|.+.|.+++|+|++++|++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++|+.|
T Consensus 174 ------~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d 247 (340)
T 1got_B 174 ------GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp ------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ------CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence 23466778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCceeEEecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCC
Q 008939 363 DLVQVWSMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG 440 (548)
Q Consensus 363 g~I~vwd~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~ 440 (548)
+.|++||+++++.+..+. .+...|.+++|+| +| .+|++++.|+.|++||+.+++.+.
T Consensus 248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-------~g------~~l~~g~~d~~i~vwd~~~~~~~~-------- 306 (340)
T 1got_B 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSK-------SG------RLLLAGYDDFNCNVWDALKADRAG-------- 306 (340)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-------TS------SEEEEEETTSEEEEEETTTCCEEE--------
T ss_pred CcEEEEECCCCcEEEEEccCCcccceEEEEECC-------CC------CEEEEECCCCeEEEEEcccCcEee--------
Confidence 999999999988877665 2345899999999 99 799999999999999998776543
Q ss_pred CCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 441 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 441 ~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
.+.+|...|++++|+|++ |++++.|+.|+|||
T Consensus 307 ---------------------------------------~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 307 ---------------------------------------VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ---------------------------------------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ---------------------------------------EeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 345699999999999984 99999999999997
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.7e-41 Score=337.48 Aligned_cols=291 Identities=12% Similarity=0.152 Sum_probs=232.7
Q ss_pred CCCCCceeEEeCCCCCEEEEecCCeEEEEEccC---------CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNS---------QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG 198 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~---------~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg 198 (548)
.|...+.+++|+|||++|+.++++++++||... ...........+...|.+++|+|+ + .|++|+.||
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---~-~l~~~s~dg 103 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE---R-GILVASDSG 103 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT---T-EEEEEETTS
T ss_pred cccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC---C-eEEEEECCC
Confidence 356678899999999999998876888886321 011112222335668999999997 3 688999999
Q ss_pred cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccce
Q 008939 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
.|++||+++. +.+.. ..+. ...|...|++|+|+|++. +|++|+.|+.|++||+++
T Consensus 104 ~v~lWd~~~~-----~~~~~-~~~~--~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~---------------- 158 (344)
T 4gqb_B 104 AVELWELDEN-----ETLIV-SKFC--KYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQ---------------- 158 (344)
T ss_dssp EEEEEEECTT-----SSCEE-EEEE--EECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT----------------
T ss_pred EEEEEeccCC-----CceeE-eecc--ccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCC----------------
Confidence 9999999862 21111 1111 113899999999999999 999999999999999986
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCeEEEeee--ecCCceEEEEEccC-CC
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMD-GK 354 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~spd-g~ 354 (548)
..++..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+. .+...+.+++|+|+ ++
T Consensus 159 ----------~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 228 (344)
T 4gqb_B 159 ----------QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSE 228 (344)
T ss_dssp ----------TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTT
T ss_pred ----------CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCc
Confidence 34577888999999999999987 578999999999999999998877653 45567999999995 56
Q ss_pred EEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 355 YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 355 ~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
+|++|+.|+.|+|||+++++++..+.+|...|++++|+| +|. ++|++++.|+.|+|||+++++++.
T Consensus 229 ~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp-------~g~-----~~lasgs~D~~i~vwd~~~~~~~~-- 294 (344)
T 4gqb_B 229 VFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP-------HSV-----PFLASLSEDCSLAVLDSSLSELFR-- 294 (344)
T ss_dssp EEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECS-------SSS-----CCEEEEETTSCEEEECTTCCEEEE--
T ss_pred ceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEcc-------CCC-----eEEEEEeCCCeEEEEECCCCcEEE--
Confidence 889999999999999999999999999999999999999 872 479999999999999998876532
Q ss_pred ecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe---EEEEECCCeEEEEe
Q 008939 435 RRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTVCREGHIKIWM 511 (548)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~---l~t~s~Dg~I~iW~ 511 (548)
+.+|.+.|++|+|+|+. |++++.|++|++|+
T Consensus 295 ----------------------------------------------~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 295 ----------------------------------------------SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp ----------------------------------------------ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred ----------------------------------------------EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 24699999999999963 67999999999999
Q ss_pred CCCCCc
Q 008939 512 RPGVAE 517 (548)
Q Consensus 512 ~~~~~~ 517 (548)
++.+..
T Consensus 329 v~~~~~ 334 (344)
T 4gqb_B 329 VPTEPL 334 (344)
T ss_dssp CCC---
T ss_pred CCCCCC
Confidence 987653
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.2e-40 Score=351.60 Aligned_cols=378 Identities=18% Similarity=0.257 Sum_probs=300.5
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
+.+|...|++++|+|||++|++++.| .|+|||.. .+.+..+..|...|++++|+|+ +.+|++++.|+.|++||
T Consensus 12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~---~~~~~~l~gh~~~V~~l~fspd---g~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVWGVAFSPD---GQTIASASDDKTVKLWN 85 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT---SCEEEEEECCSSCEEEEEECTT---SSEEEEEETTSCEEEEE
T ss_pred ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC---CCEEEEEeCCCCCEEEEEECCC---CCEEEEEeCCCEEEEEE
Confidence 56899999999999999999999888 99999964 3588899999999999999998 88999999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC------CC--ccccc--
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD------SS--FPVIK-- 274 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~------~~--~~~~~-- 274 (548)
+.. +.+.. . ..|...|.+++|+|++. +|++++.|+.+++|+........ .. .....
T Consensus 86 ~~~------~~~~~-~------~~~~~~v~~~~~s~d~~-~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 151 (577)
T 2ymu_A 86 RNG------QLLQT-L------TGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG 151 (577)
T ss_dssp TTS------CEEEE-E------CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTS
T ss_pred CCC------CEEEE-E------ECCCCCEEEEEECCCCC-EEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCC
Confidence 653 22211 1 13788999999999999 99999999999999975311000 00 00000
Q ss_pred ---------------------------------------ccceeeeecCC------CCCCCCeeEeeecCCCeEEEEECC
Q 008939 275 ---------------------------------------DQTQFSVAHPR------YSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 275 ---------------------------------------~~~~~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
+...+...... ....+.+..+..|...|.+++|+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~ 231 (577)
T 2ymu_A 152 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 231 (577)
T ss_dssp SCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT
T ss_pred ccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECC
Confidence 00000000000 012344566778999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGV 389 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v 389 (548)
++++|++++.|+.|++||.. ++.+..+.+|...|.+++|+|+++.|++++.|+.|++||.. ++.+..+.+|...|.++
T Consensus 232 dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~ 309 (577)
T 2ymu_A 232 DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGV 309 (577)
T ss_dssp TSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE
T ss_pred CCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEE
Confidence 99999999999999999964 67788889999999999999999999999999999999964 67778889999999999
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCce
Q 008939 390 AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSM 469 (548)
Q Consensus 390 ~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~ 469 (548)
+|+| ++ .+|++++.|+.|++||+...+..........+..+++++++ ..+..+..++.+++
T Consensus 310 ~~~~-------~~------~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g------~~l~~~~~dg~v~~ 370 (577)
T 2ymu_A 310 AFSP-------DG------QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG------QTIASASDDKTVKL 370 (577)
T ss_dssp EECT-------TS------SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS------SEEEEEETTSEEEE
T ss_pred EECC-------CC------CEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCC------CEEEEEeCCCEEEE
Confidence 9999 88 79999999999999998766544333333455667787776 45677778888999
Q ss_pred eecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCc-cccCCCCcEE--EecCCCCceEeeecccc
Q 008939 470 RDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAE-SQSSSSETVL--STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 470 ~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~-~~~~~~~~v~--~~s~d~~~l~s~~~~g~ 544 (548)
|+. ..+.+..+.+|...|++++|+|++ |++++.|+.|++|+..+... ....|...+. +++||+++|+++...+.
T Consensus 371 ~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 371 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449 (577)
T ss_dssp EET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE
Confidence 995 567788899999999999999984 99999999999999766542 3346777776 78999999999977654
Q ss_pred c
Q 008939 545 S 545 (548)
Q Consensus 545 ~ 545 (548)
+
T Consensus 450 v 450 (577)
T 2ymu_A 450 V 450 (577)
T ss_dssp E
T ss_pred E
Confidence 3
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.7e-40 Score=328.70 Aligned_cols=289 Identities=11% Similarity=0.146 Sum_probs=250.0
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.+|...|.+++|+|++.+|++++.| +|+|||..+.. ....+..+...+.+++|+|+ +..|++|+.|+.|.+|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~--~~~~~~~~~~~v~~~~~sp~---g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN--KEHAVTMPCTWVMACAYAPS---GCAIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECSSSCCCEEEECTT---SSEEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--cceEEecCCCCEEEEEECCC---CCEEEEeeCCCCEEEE
Confidence 456899999999999999999999988 99999998754 77788888889999999999 8899999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
++............... ..|...|.+++|+|++. .|++++.|++|++||+++
T Consensus 134 ~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~--------------------- 185 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSV------AMHTNYLSACSFTNSDM-QILTASGDGTCALWDVES--------------------- 185 (354)
T ss_dssp ECCCCTTCCSGGGCEEE------EECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTT---------------------
T ss_pred EEeccccccccccceee------eccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCC---------------------
Confidence 98652111111111111 13889999999999998 899999999999999986
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECC--CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFST--DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~ 361 (548)
...+..+..|...|.+++|+| ++++|++++.|+.|++||+++++++..+..|...|.+++|+|++++|++|+.
T Consensus 186 -----~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 260 (354)
T 2pbi_B 186 -----GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD 260 (354)
T ss_dssp -----CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred -----CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC
Confidence 345778889999999999988 5789999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCceeEEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC
Q 008939 362 DDLVQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL 439 (548)
Q Consensus 362 dg~I~vwd~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~ 439 (548)
|+.|++||++..+.+..+.. +...+.+++|+| +| .+|++++.|+.|++||+.+++.+..
T Consensus 261 D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~-------~g------~~l~~g~~d~~i~vwd~~~~~~~~~------ 321 (354)
T 2pbi_B 261 DATCRLYDLRADREVAIYSKESIIFGASSVDFSL-------SG------RLLFAGYNDYTINVWDVLKGSRVSI------ 321 (354)
T ss_dssp TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-------TS------SEEEEEETTSCEEEEETTTCSEEEE------
T ss_pred CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC-------CC------CEEEEEECCCcEEEEECCCCceEEE------
Confidence 99999999999887776654 345789999999 98 7999999999999999988765432
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
+.+|...|++++|+|++ |++++.|++|+||+
T Consensus 322 -----------------------------------------l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 322 -----------------------------------------LFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -----------------------------------------ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -----------------------------------------EECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 34689999999999984 99999999999996
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.4e-40 Score=321.69 Aligned_cols=286 Identities=15% Similarity=0.170 Sum_probs=243.9
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.+|...|.+++|+|++.++++++.| .|+|||++++. .+..+..+...+.+++|+|+ +++|++|+.|+.|++|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV--EVRSIQVTETPVRAGKFIAR---KNWIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEEEGG---GTEEEEEETTSEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc--eeEEeeccCCcEEEEEEeCC---CCEEEEECCCCEEEEE
Confidence 356799999999999999999999888 99999999854 88888889999999999998 8899999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
|+++ ++.+.... .|...|++++|+|++. +|++|+.|++|++||++..
T Consensus 83 d~~~-----~~~~~~~~-------~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~-------------------- 129 (304)
T 2ynn_A 83 NYNT-----GEKVVDFE-------AHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENN-------------------- 129 (304)
T ss_dssp ETTT-----CCEEEEEE-------CCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGT--------------------
T ss_pred ECCC-----CcEEEEEe-------CCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCC--------------------
Confidence 9876 22222211 3889999999999999 9999999999999999752
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEcc--CCCEEEEE
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWSM--DGKYILTG 359 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~sp--dg~~l~sg 359 (548)
......+..|...|.+++|+| ++.+|++++.|+.|++||+++......+. .|...+..+.|+| ++++|++|
T Consensus 130 -----~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 204 (304)
T 2ynn_A 130 -----WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (304)
T ss_dssp -----TEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEE
T ss_pred -----cchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEE
Confidence 123456778899999999999 68899999999999999998776655544 4567899999987 77899999
Q ss_pred eCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC
Q 008939 360 GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL 439 (548)
Q Consensus 360 s~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~ 439 (548)
+.|+.|++||+++++++..+.+|...|.+++|+| ++ .+|++++.|+.|++||+++++++..+.
T Consensus 205 s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-------~~------~~l~s~s~Dg~i~iWd~~~~~~~~~~~---- 267 (304)
T 2ynn_A 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-------TL------PIIISGSEDGTLKIWNSSTYKVEKTLN---- 267 (304)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-------SS------SEEEEEETTSCEEEEETTTCCEEEEEC----
T ss_pred cCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC-------CC------CEEEEEcCCCeEEEEECCCCceeeecc----
Confidence 9999999999999999999999999999999999 88 699999999999999999888765443
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe----EEEEECCCeEEEEeCCC
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES----VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~----l~t~s~Dg~I~iW~~~~ 514 (548)
.|...+.+++|+|+. +++++ |..+.+|++..
T Consensus 268 -------------------------------------------~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 268 -------------------------------------------VGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN 302 (304)
T ss_dssp -------------------------------------------CSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred -------------------------------------------CCCccEEEEEECCCCCceEEEEec-CCceEEEEecc
Confidence 467889999999963 55555 55577787754
No 11
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.7e-41 Score=338.68 Aligned_cols=301 Identities=15% Similarity=0.228 Sum_probs=252.4
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
-.+.+|.+.|.+++|+|++.+|++++.| +|+|||+.++. .+..+..|...+.+++|+|+ +.+|++|+.|+.|++
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~--~~~~~~~h~~~v~~~~~s~~---g~~las~~~d~~v~i 134 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ--KTHAIKLHCPWVMECAFAPN---GQSVACGGLDSACSI 134 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE--EEEEEECCCTTCCCCEECTT---SSEEEECCSSSCCEE
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--cceEEecCCCCEEEEEECCC---CCEEEEeeCCCcEEE
Confidence 3467899999999999999999999988 99999998854 78888889999999999999 889999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
||+.......... ........|...|.++.|.|++...|++|+.|++|++||+.+..
T Consensus 135 w~~~~~~~~~~~~-----~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~------------------ 191 (380)
T 3iz6_a 135 FNLSSQADRDGNM-----PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ------------------ 191 (380)
T ss_dssp EECCCCSSCCCSS-----TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC------------------
T ss_pred EECCCCccccCCc-----cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc------------------
Confidence 9997532111110 01112235889999999999876689999999999999998631
Q ss_pred cCCCCCCCCeeEe-----eecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCC-CCeEEEeeeecCCceEEEEEccCCCE
Q 008939 283 HPRYSKSNPIARW-----HICQGSINSIAFST-DGTYLATVGRDGYLRVFDYS-KEQLICGGKSYYGALLCCAWSMDGKY 355 (548)
Q Consensus 283 ~~~~~~~~~~~~~-----~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~-~~~~~~~~~~~~~~v~~l~~spdg~~ 355 (548)
.+..+ .+|...|.+++|++ ++++|++++.|+.|++||++ ..+.+..+.+|.+.|.+++|+|++++
T Consensus 192 --------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 263 (380)
T 3iz6_a 192 --------RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR 263 (380)
T ss_dssp --------EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE
T ss_pred --------EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe
Confidence 12222 45778999999987 88999999999999999998 45777888999999999999999999
Q ss_pred EEEEeCCCeEEEEECCCceeEEeccCCC-------CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHN-------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 356 l~sgs~dg~I~vwd~~~~~~~~~~~~h~-------~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
|++|+.|+.|++||+++++++..+..+. ..|++++|+| +| .+|++++.|+.|++||+..+
T Consensus 264 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~g------~~l~~g~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-------SG------RLLFAGYSNGDCYVWDTLLA 330 (380)
T ss_dssp EEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-------SS------SEEEEECTTSCEEEEETTTC
T ss_pred EEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-------CC------CEEEEEECCCCEEEEECCCC
Confidence 9999999999999999999888776443 3589999999 98 79999999999999999988
Q ss_pred eEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCe
Q 008939 429 EIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGH 506 (548)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~ 506 (548)
+.+..+.. ...+|...|++++|+|++ |++|+.|+.
T Consensus 331 ~~~~~~~~-------------------------------------------~~~~h~~~v~~l~~s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 331 EMVLNLGT-------------------------------------------LQNSHEGRISCLGLSSDGSALCTGSWDKN 367 (380)
T ss_dssp CEEEEECC-------------------------------------------SCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred ceEEEEec-------------------------------------------ccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence 87655432 113689999999999984 999999999
Q ss_pred EEEEeCCCCC
Q 008939 507 IKIWMRPGVA 516 (548)
Q Consensus 507 I~iW~~~~~~ 516 (548)
|+||++.+..
T Consensus 368 i~iW~~~~~~ 377 (380)
T 3iz6_a 368 LKIWAFSGHR 377 (380)
T ss_dssp EEEEECCSSS
T ss_pred EEEEecCCCc
Confidence 9999987653
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.6e-40 Score=331.49 Aligned_cols=291 Identities=13% Similarity=0.193 Sum_probs=233.1
Q ss_pred CCCCCCceeEEeCCCCCEEEEecC------C-eEEEEEccCCCC--CCeEEEecCCCCceEEEecCCCCCCceEEEEEcC
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVG------D-AIFISDLNSQDK--DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS 197 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~------d-~v~vwd~~~~~~--~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d 197 (548)
..|...|.+++|+|||++|++++. | .+++|+..++.. ........+...|.+++|+|+ + .+++++.|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d---~-~~l~~s~d 114 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE---K-GILVASDS 114 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT---T-EEEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC---C-CEEEEECC
Confidence 469999999999999999999886 4 688888776432 123344457788999999997 4 46778999
Q ss_pred CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
|.|++||+.+........ +. ...|...|++++|+|++. +|++++.|+.|++||+++
T Consensus 115 g~v~lWd~~~~~~~~~~~------~~--~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~--------------- 170 (357)
T 4g56_B 115 GAVELWEILEKESLLVNK------FA--KYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQ--------------- 170 (357)
T ss_dssp SCEEEC--------CCCC------EE--ECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTT---------------
T ss_pred CEEEEeeccccceeEEEe------ec--cCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCC---------------
Confidence 999999998631111111 11 113789999999999999 999999999999999986
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCeEEEee--eecCCceEEEEEccCC-
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDG- 353 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~~~~~~~--~~~~~~v~~l~~spdg- 353 (548)
...+..+..|...|++++|++++. ++++++.|+.|++||+++++.+..+ ..+...+.+++|+|++
T Consensus 171 -----------~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 239 (357)
T 4g56_B 171 -----------KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD 239 (357)
T ss_dssp -----------TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred -----------CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence 245677888999999999999874 7899999999999999988876554 3466789999999975
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 354 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
.+|++|+.|+.|++||+++++++..+.+|...|++++|+| ++. ++|++++.|+.|+|||+++++++..
T Consensus 240 ~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp-------~~~-----~~lasgs~D~~i~iwd~~~~~~~~~ 307 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSY-------HSS-----PFLASISEDCTVAVLDADFSEVFRD 307 (357)
T ss_dssp TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECS-------SSS-----CCEEEEETTSCEEEECTTSCEEEEE
T ss_pred ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcC-------CCC-----CEEEEEeCCCEEEEEECCCCcEeEE
Confidence 6899999999999999999999999999999999999999 762 4799999999999999998876532
Q ss_pred eecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeC-C--eEEEEECCCeEEEE
Q 008939 434 LRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ-E--SVLTVCREGHIKIW 510 (548)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp-d--~l~t~s~Dg~I~iW 510 (548)
.+|.+.|++|+|+| + .|+|++.||+|++|
T Consensus 308 ------------------------------------------------~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW 339 (357)
T 4g56_B 308 ------------------------------------------------LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHH 339 (357)
T ss_dssp ------------------------------------------------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred ------------------------------------------------CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEE
Confidence 25889999999998 4 49999999999999
Q ss_pred eCCCCC
Q 008939 511 MRPGVA 516 (548)
Q Consensus 511 ~~~~~~ 516 (548)
+++...
T Consensus 340 ~~~~~~ 345 (357)
T 4g56_B 340 HLPSEG 345 (357)
T ss_dssp ECC---
T ss_pred ECCCCC
Confidence 997643
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=324.92 Aligned_cols=303 Identities=13% Similarity=0.161 Sum_probs=240.1
Q ss_pred cCCCCC-CceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEE-EecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 126 ASSSST-SMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKS-IHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 126 ~~~h~~-~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~-~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
+.+|.. .+..++|+|+|++|++++.| .|+|||++.+....... ...|...+.+++|+|+ +.+|++|+.|+.|++
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~---g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC---GNYLASASFDATTCI 87 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT---SSEEEEEETTSCEEE
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC---CCEEEEEECCCcEEE
Confidence 346766 89999999999999999888 99999998743111112 2457889999999998 889999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
||+..... ...... ..|...|++++|+|++. +|++++.|+.|++||++....
T Consensus 88 w~~~~~~~----~~~~~~------~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~----------------- 139 (345)
T 3fm0_A 88 WKKNQDDF----ECVTTL------EGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDE----------------- 139 (345)
T ss_dssp EEECCC-E----EEEEEE------CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSC-----------------
T ss_pred EEccCCCe----EEEEEc------cCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCC-----------------
Confidence 99875210 111111 24889999999999998 999999999999999975211
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe--EEEeeeecCCceEEEEEccCCCEEEEEe
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ--LICGGKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
...+..+..|...|.+++|+|++++|++++.|+.|++||+++++ +...+.+|...|.+++|+|++++|++|+
T Consensus 140 ------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s 213 (345)
T 3fm0_A 140 ------YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 213 (345)
T ss_dssp ------EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ------eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe
Confidence 12345677888999999999999999999999999999998875 4467889999999999999999999999
Q ss_pred CCCeEEEEECCC---------------ceeEEeccC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 008939 361 EDDLVQVWSMED---------------RKVVAWGEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424 (548)
Q Consensus 361 ~dg~I~vwd~~~---------------~~~~~~~~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd 424 (548)
.|+.|+|||... .+++..+.+ |...|.+++|+| ++ ..|++++.|+.|++||
T Consensus 214 ~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-------~~------~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 214 DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ-------LT------GALATACGDDAIRVFQ 280 (345)
T ss_dssp TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT-------TT------CCEEEEETTSCEEEEE
T ss_pred CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec-------CC------CEEEEEeCCCeEEEEE
Confidence 999999999632 134555555 899999999999 88 6899999999999999
Q ss_pred CCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC---eEEEE
Q 008939 425 LEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTV 501 (548)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd---~l~t~ 501 (548)
.......... .+ ......+.+|...|++|+|+|+ .|+++
T Consensus 281 ~~~~~~~~~~---------~~-----------------------------~~~~~~~~~h~~~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 281 EDPNSDPQQP---------TF-----------------------------SLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp ECTTSCTTSC---------CE-----------------------------EEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred eCCCCCccee---------eE-----------------------------EEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence 8754311000 00 0011223579999999999996 48999
Q ss_pred ECCCeEEEEeCCCCC
Q 008939 502 CREGHIKIWMRPGVA 516 (548)
Q Consensus 502 s~Dg~I~iW~~~~~~ 516 (548)
+.||+|++|++...+
T Consensus 323 s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 323 SDDGEVAFWKYQRPE 337 (345)
T ss_dssp ETTSCEEEEEECC--
T ss_pred CCCCcEEEEEecCCC
Confidence 999999999987755
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-39 Score=320.28 Aligned_cols=297 Identities=15% Similarity=0.180 Sum_probs=231.7
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEE-ec-CCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSI-HF-SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~-~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
+.+|.+.|.+++|+++ +|++++.| .|+|||+..+....+..+ .. |...+.+++|+|+ +.+|++|+.|+.|++
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~---~~~las~s~D~~v~i 84 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH---TSLLAAGSFDSTVSI 84 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT---SSEEEEEETTSCEEE
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC---CCEEEEEeCCCcEEE
Confidence 4579999999999987 88888877 999999987543345555 33 7889999999998 889999999999999
Q ss_pred EEeeecccc-cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 203 VSLRQQLQD-VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 203 wdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
||++..... ........ ...|...|++++|+|++. +|++|+.|+.|++||++..+.
T Consensus 85 w~~~~~~~~~~~~~~~~~------~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~---------------- 141 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAI------IEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGE---------------- 141 (330)
T ss_dssp EEC-------CCCEEEEE------EC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCC----------------
T ss_pred EEcccCcCccccceeEEE------EcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCC----------------
Confidence 998642110 00111111 124889999999999998 999999999999999964211
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC--eEEEeeeecCCceEEEEEccC--CCEEE
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE--QLICGGKSYYGALLCCAWSMD--GKYIL 357 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~l~~spd--g~~l~ 357 (548)
....+..+..|...|.+++|+|++++|++++.|+.|++||..++ +++..+.+|.+.|.+++|+|+ +.+|+
T Consensus 142 ------~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 142 ------EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp ------CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred ------CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 01345667889999999999999999999999999999999876 677888999999999999998 67899
Q ss_pred EEeCCCeEEEEECCCc--------eeEEeccC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 358 TGGEDDLVQVWSMEDR--------KVVAWGEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~--------~~~~~~~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+|+.|+.|++||++.+ .+...+.+ |...|.+++|++ ++ +|++++.|+.|++||..++
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-------~~-------~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-------NG-------LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-------TS-------CEEEEETTSCEEEEEEETT
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-------CC-------EEEEEeCCCEEEEEEcCCC
Confidence 9999999999999764 45556665 999999999997 66 7999999999999998766
Q ss_pred eEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCC-CeeEEEEeC--C--eEEEEEC
Q 008939 429 EIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTE-PLSGLIFTQ--E--SVLTVCR 503 (548)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~-~V~~l~fsp--d--~l~t~s~ 503 (548)
+..... ....+|.. .|++++|+| + .|++++.
T Consensus 282 ~~~~~~--------------------------------------------~~~~~h~~~~v~~v~~~~~~~~~~las~s~ 317 (330)
T 2hes_X 282 EWKVFA--------------------------------------------KRALCHGVYEINVVKWLELNGKTILATGGD 317 (330)
T ss_dssp EEEEEE--------------------------------------------EESCTTTTSCEEEEEEC-----CCEEEEET
T ss_pred ceEEEe--------------------------------------------ccccccccceEEEEEEecCCCceEEEEecC
Confidence 421110 01135776 899999998 4 3999999
Q ss_pred CCeEEEEeCCC
Q 008939 504 EGHIKIWMRPG 514 (548)
Q Consensus 504 Dg~I~iW~~~~ 514 (548)
||+|+||++..
T Consensus 318 Dg~v~~W~~~~ 328 (330)
T 2hes_X 318 DGIVNFWSLEK 328 (330)
T ss_dssp TSEEEEEEC--
T ss_pred CCcEEEEEecc
Confidence 99999999864
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.6e-39 Score=315.97 Aligned_cols=293 Identities=13% Similarity=0.161 Sum_probs=246.0
Q ss_pred ccCCCCCCceeEEeCCCC-CEEEEecCC-eEEEEEccCCCC---CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc
Q 008939 125 GASSSSTSMTNTNFDGKG-TYIIFNVGD-AIFISDLNSQDK---DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD 199 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g-~~l~~~~~d-~v~vwd~~~~~~---~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~ 199 (548)
.+.+|.+.|.+++|+|++ .++++++.| +|++|++..... .++..+..|...+.+++|+|+ +.+|++|+.|+.
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d---g~~l~s~s~D~~ 88 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD---GAYALSASWDKT 88 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT---SSEEEEEETTSE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC---CCEEEEEeCCCE
Confidence 456899999999999965 789898888 999999875321 246778889999999999998 889999999999
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
|++||+++. +.+.. . ..|...|.+++|+|++. +|++++.|+.|++||++.
T Consensus 89 v~~wd~~~~-----~~~~~-~------~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~----------------- 138 (319)
T 3frx_A 89 LRLWDVATG-----ETYQR-F------VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG----------------- 138 (319)
T ss_dssp EEEEETTTT-----EEEEE-E------ECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS-----------------
T ss_pred EEEEECCCC-----CeeEE-E------ccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC-----------------
Confidence 999999762 22211 1 13889999999999999 999999999999999863
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCC------CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTD------GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG 353 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~------g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg 353 (548)
..+..+..|...|.+++|+|. +.+|++++.|+.|++||+++.+....+.+|...|.+++|+|++
T Consensus 139 ----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 139 ----------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208 (319)
T ss_dssp ----------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS
T ss_pred ----------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC
Confidence 235667788899999999985 4489999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 354 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
++|++|+.|+.|++||+++++++..+.. ...|.+++|+| ++ .+|++++. ..+++|++.....+..
T Consensus 209 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp-------~~------~~la~~~~-~~i~v~~~~~~~~~~~ 273 (319)
T 3frx_A 209 TLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSP-------NR------YWLAAATA-TGIKVFSLDPQYLVDD 273 (319)
T ss_dssp SEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECS-------SS------SEEEEEET-TEEEEEEETTEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcC-------CC------CEEEEEcC-CCcEEEEeCcCeeeec
Confidence 9999999999999999999999988884 56899999999 88 67776664 5699999998776655
Q ss_pred eecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 434 LRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
+..... .....|...+.+++|+||+ |++++.||.|+|||
T Consensus 274 ~~~~~~---------------------------------------~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 274 LRPEFA---------------------------------------GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp ECCCCT---------------------------------------TCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCcccc---------------------------------------ccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 543100 0112467789999999984 99999999999999
Q ss_pred CCC
Q 008939 512 RPG 514 (548)
Q Consensus 512 ~~~ 514 (548)
+.+
T Consensus 315 ~~t 317 (319)
T 3frx_A 315 VMT 317 (319)
T ss_dssp EEE
T ss_pred Eee
Confidence 864
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.7e-39 Score=317.34 Aligned_cols=280 Identities=15% Similarity=0.193 Sum_probs=237.4
Q ss_pred EecCCCCceEEEecCCCC-CCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEE
Q 008939 169 IHFSNSNPVCHAFDQDAK-DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 169 ~~~~~~~~~~~~~~p~~~-~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 247 (548)
...|.+.|.+++|+|+.. ++.+|++|+.|+.|++||++.. .... .+. ...|...|.+++|+|++. +++
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~------~~~~--~~~--l~gh~~~v~~~~~~~~~~-~l~ 96 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE------RLDL--QWS--LEGHQLGVVSVDISHTLP-IAA 96 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETT------EEEE--EEE--ECCCSSCEEEEEECSSSS-EEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC------Ceee--eee--eccCCCCEEEEEECCCCC-EEE
Confidence 345888999999998643 4678999999999999998752 1110 011 124899999999999998 999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd 327 (548)
+++.|+.|++||+... ..+..+..|...+.+++|+|++++|++++.|+.|++||
T Consensus 97 s~s~D~~i~lWd~~~~--------------------------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~ 150 (321)
T 3ow8_A 97 SSSLDAHIRLWDLENG--------------------------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150 (321)
T ss_dssp EEETTSEEEEEETTTT--------------------------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEE
T ss_pred EEeCCCcEEEEECCCC--------------------------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 9999999999999862 34556677778899999999999999999999999999
Q ss_pred CCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 328 YSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 328 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
+++++....+..|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+| ++
T Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-------d~----- 218 (321)
T 3ow8_A 151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-------DS----- 218 (321)
T ss_dssp TTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT-------TS-----
T ss_pred cCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC-------CC-----
Confidence 999999888999999999999999999999999999999999999999999999999999999999 98
Q ss_pred eEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC
Q 008939 408 MYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP 487 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~ 487 (548)
.+|++++.|+.|++||+++++++.. +.+|...
T Consensus 219 -~~l~s~s~dg~i~iwd~~~~~~~~~-----------------------------------------------~~~h~~~ 250 (321)
T 3ow8_A 219 -QLLVTASDDGYIKIYDVQHANLAGT-----------------------------------------------LSGHASW 250 (321)
T ss_dssp -CEEEEECTTSCEEEEETTTCCEEEE-----------------------------------------------ECCCSSC
T ss_pred -CEEEEEcCCCeEEEEECCCcceeEE-----------------------------------------------EcCCCCc
Confidence 7999999999999999987765433 3468999
Q ss_pred eeEEEEeCC--eEEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 488 LSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 488 V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
|.+++|+|+ .|++++.|++|++||+..... ....|...|. +++|++++|+++...|.+
T Consensus 251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i 314 (321)
T 3ow8_A 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEI 314 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 999999997 499999999999999987663 3346777777 788999999999887654
No 17
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1e-38 Score=327.11 Aligned_cols=284 Identities=11% Similarity=0.139 Sum_probs=243.6
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
...+..|...|++++|+|+ +.+|++|+.||.|++||+.+. +... .. ..|...|++++|+|++. +
T Consensus 101 ~~~l~gh~~~V~~~~~~p~---~~~l~s~s~Dg~i~vwd~~~~-----~~~~-~l------~~h~~~V~~v~~~~~~~-~ 164 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPV---FSVMVSASEDATIKVWDYETG-----DFER-TL------KGHTDSVQDISFDHSGK-L 164 (410)
T ss_dssp SCEEECCSSCEEEEEECSS---SSEEEEEESSSCEEEEETTTC-----CCCE-EE------CCCSSCEEEEEECTTSS-E
T ss_pred eEeecccCCcEEEEEEcCC---CCEEEEEeCCCeEEEEECCCC-----cEEE-EE------eccCCcEEEEEEcCCCC-E
Confidence 4567789999999999998 789999999999999998762 2111 11 24889999999999998 9
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 325 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~v 325 (548)
|++|+.|+.|++||+.. ...+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 165 l~sgs~D~~i~iwd~~~--------------------------~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~ 218 (410)
T 1vyh_C 165 LASCSADMTIKLWDFQG--------------------------FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 218 (410)
T ss_dssp EEEEETTSCCCEEETTS--------------------------SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred EEEEeCCCeEEEEeCCC--------------------------CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 99999999999999975 2346667788999999999999999999999999999
Q ss_pred EeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCcc
Q 008939 326 FDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAE 405 (548)
Q Consensus 326 wd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~ 405 (548)
||+++++++..+.+|...|.++.|+|++++|++|+.|+.|++||++++++...+.+|...|.+++|+| ++...
T Consensus 219 wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~-------~~~~~ 291 (410)
T 1vyh_C 219 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP-------ESSYS 291 (410)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECC-------SCGGG
T ss_pred EECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcC-------ccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 42100
Q ss_pred --------------ceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceee
Q 008939 406 --------------TVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRD 471 (548)
Q Consensus 406 --------------~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d 471 (548)
....+|++++.|+.|++||+++++++..
T Consensus 292 ~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~-------------------------------------- 333 (410)
T 1vyh_C 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT-------------------------------------- 333 (410)
T ss_dssp GGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE--------------------------------------
T ss_pred chhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE--------------------------------------
Confidence 0015899999999999999998876543
Q ss_pred cCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 472 VPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 472 ~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
+.+|...|++++|+|++ |++++.||.|++||+..... ....|...|. +++|++++|+++...|.+
T Consensus 334 ---------~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i 404 (410)
T 1vyh_C 334 ---------LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV 404 (410)
T ss_dssp ---------EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred ---------EECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence 34688999999999974 99999999999999977653 3346777776 788999999999887654
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-38 Score=322.85 Aligned_cols=282 Identities=17% Similarity=0.284 Sum_probs=234.4
Q ss_pred CCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCC------------------CCceEEEecCCCCCCc
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSN------------------SNPVCHAFDQDAKDGH 189 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~------------------~~~~~~~~~p~~~~~~ 189 (548)
.|...|.+++|+|+|++|+++.++.++||++.++. .+..+..+. ..+.+++|+|+ +.
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d---g~ 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGS--LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD---GK 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCC--EEEEECC-----------------CCCCBEEEEEECTT---SS
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCC--EEEEecCccccccccccccccccCCCceeEEEEEECCC---CC
Confidence 58999999999999999999887799999998754 555554332 13889999998 88
Q ss_pred eEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 008939 190 DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS 269 (548)
Q Consensus 190 ~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 269 (548)
+|++|+.||.|++||+++. + ..... ..|...|++++|+|++. +|++++.|+.|++||+++..
T Consensus 137 ~l~s~~~d~~i~iwd~~~~-----~-~~~~~------~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~----- 198 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENR-----K-IVMIL------QGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQ----- 198 (393)
T ss_dssp EEEEEETTSCEEEEETTTT-----E-EEEEE------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE-----
T ss_pred EEEEEcCCCeEEEEECCCC-----c-EEEEE------ccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCe-----
Confidence 9999999999999998761 2 22111 14889999999999999 99999999999999998621
Q ss_pred cccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEee-------eecC
Q 008939 270 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGG-------KSYY 341 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~-------~~~~ 341 (548)
....+ .+...+.+++|+| ++++|++++.|+.|++||+++++++..+ .+|.
T Consensus 199 ---------------------~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~ 256 (393)
T 1erj_A 199 ---------------------CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 256 (393)
T ss_dssp ---------------------EEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS
T ss_pred ---------------------eEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCC
Confidence 12222 2346799999999 8999999999999999999999887666 5788
Q ss_pred CceEEEEEccCCCEEEEEeCCCeEEEEECCCc------------eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeE
Q 008939 342 GALLCCAWSMDGKYILTGGEDDLVQVWSMEDR------------KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409 (548)
Q Consensus 342 ~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~------------~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~ 409 (548)
..|.+++|+|++++|++|+.|+.|++||+++. .+...+.+|...|.+++|+| ++ .
T Consensus 257 ~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------~~------~ 323 (393)
T 1erj_A 257 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-------ND------E 323 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-------GG------C
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC-------CC------C
Confidence 99999999999999999999999999999753 34567789999999999999 88 7
Q ss_pred EEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCee
Q 008939 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLS 489 (548)
Q Consensus 410 ~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~ 489 (548)
+|++++.|+.|++||+++++++. .+.+|...|.
T Consensus 324 ~l~sgs~D~~v~iwd~~~~~~~~-----------------------------------------------~l~~h~~~v~ 356 (393)
T 1erj_A 324 YILSGSKDRGVLFWDKKSGNPLL-----------------------------------------------MLQGHRNSVI 356 (393)
T ss_dssp EEEEEETTSEEEEEETTTCCEEE-----------------------------------------------EEECCSSCEE
T ss_pred EEEEEeCCCeEEEEECCCCeEEE-----------------------------------------------EECCCCCCEE
Confidence 99999999999999998877554 3446899999
Q ss_pred EEEEeC------C--eEEEEECCCeEEEEeCCC
Q 008939 490 GLIFTQ------E--SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 490 ~l~fsp------d--~l~t~s~Dg~I~iW~~~~ 514 (548)
+++|++ + .|++|+.||+|+||++..
T Consensus 357 ~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999986 3 499999999999999754
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.9e-38 Score=308.67 Aligned_cols=282 Identities=17% Similarity=0.214 Sum_probs=234.9
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+..+.+..|...|.+++|+|+ +.+|++++.||.|++||+++. +.+. ... .|...|.+++|+|+++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~---~~~l~s~~~dg~v~lWd~~~~-----~~~~-~~~------~~~~~v~~~~~~~~~~ 68 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPT---EPWVLTTLYSGRVELWNYETQ-----VEVR-SIQ------VTETPVRAGKFIARKN 68 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSS---SSEEEEEETTSEEEEEETTTT-----EEEE-EEE------CCSSCEEEEEEEGGGT
T ss_pred eeEEeecCCCCceEEEEECCC---CCEEEEEcCCCcEEEEECCCC-----ceeE-Eee------ccCCcEEEEEEeCCCC
Confidence 456778889999999999999 889999999999999998762 2221 111 3788999999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
+|++|+.|+.|++||+.+ ...+..+..|...|.+++|+|++++|++++.|+.|
T Consensus 69 -~l~s~s~d~~i~vwd~~~--------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v 121 (304)
T 2ynn_A 69 -WIIVGSDDFRIRVFNYNT--------------------------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121 (304)
T ss_dssp -EEEEEETTSEEEEEETTT--------------------------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred -EEEEECCCCEEEEEECCC--------------------------CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeE
Confidence 999999999999999986 24577788999999999999999999999999999
Q ss_pred EEEeCCCC-eEEEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCCceeEEecc-CCCCCeEEEEEecCCCCCCC
Q 008939 324 RVFDYSKE-QLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 324 ~vwd~~~~-~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~ 400 (548)
++||++++ .+...+.+|...|.+++|+| ++.+|++|+.|+.|++||+++......+. +|...|..+.|+| .+
T Consensus 122 ~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-----~~ 196 (304)
T 2ynn_A 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP-----LP 196 (304)
T ss_dssp EEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECC-----ST
T ss_pred EEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEE-----cC
Confidence 99999877 55677889999999999999 67899999999999999998876655544 5778999999986 11
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEE
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA 480 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~ 480 (548)
++ .+|++++.|+.|++||+++++++..+
T Consensus 197 ~~------~~l~s~s~D~~i~iWd~~~~~~~~~~---------------------------------------------- 224 (304)
T 2ynn_A 197 DK------PYMITASDDLTIKIWDYQTKSCVATL---------------------------------------------- 224 (304)
T ss_dssp TC------CEEEEEETTSEEEEEETTTTEEEEEE----------------------------------------------
T ss_pred CC------CEEEEEcCCCeEEEEeCCCCccceee----------------------------------------------
Confidence 44 68999999999999999988766543
Q ss_pred eecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcc--ccCCCCcEE--EecCCCC--ceEeeeccccc
Q 008939 481 HRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAES--QSSSSETVL--STSSKDK--PLLSSKVVTSS 545 (548)
Q Consensus 481 ~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~--~~~~~~~v~--~~s~d~~--~l~s~~~~g~~ 545 (548)
.+|...|..++|+|+. |++++.||+|++||+.+.+.. ...+.+.+. +++|+++ +|+++...|.+
T Consensus 225 -~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~ 296 (304)
T 2ynn_A 225 -EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFT 296 (304)
T ss_dssp -ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEE
T ss_pred -CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceE
Confidence 4689999999999974 999999999999999876632 234556665 6678775 47888766543
No 20
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7e-38 Score=308.47 Aligned_cols=288 Identities=17% Similarity=0.261 Sum_probs=244.5
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
.....+|...|.+++|+|+++++++++.| .|+||++.++. .+..+..|...+.+++|+|+ +.+|++++.||.|+
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSD---SNLLVSASDDKTLK 90 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTT---SSEEEEEETTSEEE
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc--cchhhccCCCceEEEEEcCC---CCEEEEECCCCEEE
Confidence 44567899999999999999999998887 99999998754 77888889999999999998 88999999999999
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
+||+++. +.+. ... .|...|.+++|+|++. +|++++.|+.|++||++.
T Consensus 91 vwd~~~~-----~~~~-~~~------~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~------------------- 138 (312)
T 4ery_A 91 IWDVSSG-----KCLK-TLK------GHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKT------------------- 138 (312)
T ss_dssp EEETTTC-----CEEE-EEE------CCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTT-------------------
T ss_pred EEECCCC-----cEEE-EEc------CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCC-------------------
Confidence 9998762 2221 111 3788999999999998 999999999999999986
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEccCCCEEEEEe
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~sgs 360 (548)
...+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+. .+...+.+++|+|++++|++++
T Consensus 139 -------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 139 -------GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp -------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred -------CEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence 23456677788999999999999999999999999999999988876654 4567899999999999999999
Q ss_pred CCCeEEEEECCCceeEEeccCCCCCeEE--EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSG--VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~~h~~~V~~--v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
.|+.|++||+++++++..+.+|...+.. ..|.+ .++ .+|++++.|+.|++||+.+++++..
T Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~------~~l~sg~~dg~i~vwd~~~~~~~~~----- 274 (312)
T 4ery_A 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV------TGG------KWIVSGSEDNLVYIWNLQTKEIVQK----- 274 (312)
T ss_dssp TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC------SSS------CEEEECCTTSCEEEEETTTCCEEEE-----
T ss_pred CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe------CCC------cEEEEECCCCEEEEEECCCchhhhh-----
Confidence 9999999999999999999888765433 33443 055 6899999999999999998776543
Q ss_pred CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEE--CCCeEEEEeCC
Q 008939 439 LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVC--REGHIKIWMRP 513 (548)
Q Consensus 439 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s--~Dg~I~iW~~~ 513 (548)
+.+|.+.|.+++|+|+. |++++ .|++|++|+..
T Consensus 275 ------------------------------------------~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 275 ------------------------------------------LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ------------------------------------------ECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ------------------------------------------hhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 34688999999999974 78887 69999999864
No 21
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.9e-38 Score=311.91 Aligned_cols=285 Identities=13% Similarity=0.187 Sum_probs=242.6
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+....+..|...|.+++|+|+ +.+|++|+.||.|++||+.+ .+.+.. .. .|...|.+++|+|++.
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d---~~~l~s~s~Dg~v~iWd~~~-----~~~~~~-~~------~~~~~v~~~~~s~~~~ 110 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTD---SRLLLSASQDGKLIIWDSYT-----TNKVHA-IP------LRSSWVMTCAYAPSGN 110 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTT---SSEEEEEETTTEEEEEETTT-----CCEEEE-EE------CSSSCEEEEEECTTSS
T ss_pred hhheeecCCCCceEEEEECCC---CCEEEEEeCCCcEEEEECCC-----CCcceE-ee------cCCccEEEEEECCCCC
Confidence 356677889999999999998 88999999999999999875 222221 11 3788999999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
+|++++.|+.|++|++..... .......+.+|.+.|.++.|++++. |++++.|+.|
T Consensus 111 -~l~s~~~d~~v~iw~~~~~~~----------------------~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i 166 (340)
T 1got_B 111 -YVACGGLDNICSIYNLKTREG----------------------NVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 166 (340)
T ss_dssp -EEEEEETTCEEEEEETTTCSB----------------------SCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCE
T ss_pred -EEEEEeCCCeEEEEECccCCC----------------------cceeEEEecCCCccEEEEEECCCCc-EEEEECCCcE
Confidence 999999999999999875211 0123456778999999999998875 8899999999
Q ss_pred EEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCC
Q 008939 324 RVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGT 403 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~ 403 (548)
++||+++++.+..+.+|.+.|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+| ++
T Consensus 167 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-------~~- 238 (340)
T 1got_B 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-------NG- 238 (340)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-------TS-
T ss_pred EEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-------CC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred ccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 404 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 404 ~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
.+|++++.|+.|++||+++++.+..+.. ..
T Consensus 239 -----~~l~s~s~d~~v~iwd~~~~~~~~~~~~---------------------------------------------~~ 268 (340)
T 1got_B 239 -----NAFATGSDDATCRLFDLRADQELMTYSH---------------------------------------------DN 268 (340)
T ss_dssp -----SEEEEEETTSCEEEEETTTTEEEEEECC---------------------------------------------TT
T ss_pred -----CEEEEEcCCCcEEEEECCCCcEEEEEcc---------------------------------------------CC
Confidence 7999999999999999998876654432 12
Q ss_pred CCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 484 HTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 484 h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
+...|++++|+|++ |++++.|+.|++||+..... ....|...|. +++||+++|+++...|.+
T Consensus 269 ~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence 34579999999974 99999999999999876653 3347777776 788999999999887654
No 22
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.7e-38 Score=312.37 Aligned_cols=300 Identities=17% Similarity=0.184 Sum_probs=234.2
Q ss_pred ccCCCCCCceeEEe-----CC-CCCEEEEecCC-eEEEEEccCCCC-----CCeEEEecCCCCceEEEecCCCCCCceEE
Q 008939 125 GASSSSTSMTNTNF-----DG-KGTYIIFNVGD-AIFISDLNSQDK-----DPIKSIHFSNSNPVCHAFDQDAKDGHDLL 192 (548)
Q Consensus 125 ~~~~h~~~v~~~~~-----~~-~g~~l~~~~~d-~v~vwd~~~~~~-----~~i~~~~~~~~~~~~~~~~p~~~~~~~l~ 192 (548)
.+.+|...|.+++| ++ ++.+|++++.| +|+|||+..... .++..+..|...+.+++|+|+ +.+|+
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~---~~~l~ 92 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE---NCFAI 92 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS---TTEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC---CCEEE
Confidence 45689999999999 76 89999999988 999999976431 245667788899999999998 78999
Q ss_pred EEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc
Q 008939 193 IGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 193 ~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
+|+.|+.|++||+++ ++.+.. . ..|...|++++|+|++. +|++++.|+.|++||+..... ..
T Consensus 93 s~s~D~~v~lwd~~~-----~~~~~~-~------~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~--~~--- 154 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRT-----GTTYKR-F------VGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECK--FS--- 154 (343)
T ss_dssp EEETTSEEEEEETTS-----SCEEEE-E------ECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEE--EE---
T ss_pred EEcCCCcEEEEECCC-----CcEEEE-E------cCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCce--ee---
Confidence 999999999999986 222211 1 13889999999999999 999999999999999863100 00
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC----------CEEEEEECCCeEEEEeCCCCeEEEeeeecCC
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG----------TYLATVGRDGYLRVFDYSKEQLICGGKSYYG 342 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g----------~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 342 (548)
......|...|.+++|+|++ .+|++++.|+.|++||. ..+....+.+|..
T Consensus 155 -------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~ 214 (343)
T 2xzm_R 155 -------------------SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHES 214 (343)
T ss_dssp -------------------CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSS
T ss_pred -------------------eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccc
Confidence 00112466889999999986 79999999999999994 5677778899999
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCC-ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 343 ALLCCAWSMDGKYILTGGEDDLVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 343 ~v~~l~~spdg~~l~sgs~dg~I~vwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
.|.+++|+|++++|++|+.|+.|++||+.. ......+. +...|.+++|+| ++ .++ +++.|+.|+
T Consensus 215 ~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp-------~~------~~l-a~~~d~~v~ 279 (343)
T 2xzm_R 215 NVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNP-------KL------QWV-AVGTDQGVK 279 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECS-------SS------CEE-EEEESSCEE
T ss_pred cceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECC-------CC------CEE-EEECCCCEE
Confidence 999999999999999999999999999954 33444443 566799999999 88 444 566788999
Q ss_pred EEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EE
Q 008939 422 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VL 499 (548)
Q Consensus 422 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~ 499 (548)
+||+.+++.......... .........+|...|++++|+|++ |+
T Consensus 280 iw~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 325 (343)
T 2xzm_R 280 IFNLMTQSKAPVCTIEAE----------------------------------PITKAEGQKGKNPQCTSLAWNALGKKLF 325 (343)
T ss_dssp EEESSSCCSCSEEECCCC----------------------------------SGGGBTTBCCSCCCEEEEEECSSSCCEE
T ss_pred EEEeCCCCCCceEEeecC----------------------------------cchhhhhhcCCCCceEEEEECCCCCeEE
Confidence 999987664331111000 000011224688899999999974 99
Q ss_pred EEECCCeEEEEeCCC
Q 008939 500 TVCREGHIKIWMRPG 514 (548)
Q Consensus 500 t~s~Dg~I~iW~~~~ 514 (548)
+|+.||.|++|++.+
T Consensus 326 sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 326 AGFTDGVIRTFSFET 340 (343)
T ss_dssp EEETTSEEEEEEEEE
T ss_pred EecCCceEEEEEEEc
Confidence 999999999999764
No 23
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.3e-37 Score=308.05 Aligned_cols=288 Identities=18% Similarity=0.220 Sum_probs=242.4
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+....+..|...|.|++|+|+ +.+|++|+.||.|++||..+. +.... .. .|...|.+++|+|++.
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d---~~~l~s~s~Dg~v~vWd~~~~-----~~~~~-~~------~~~~~v~~~~~sp~g~ 119 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKD---KRRIVSSSQDGKVIVWDSFTT-----NKEHA-VT------MPCTWVMACAYAPSGC 119 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTT---SSEEEEEETTSEEEEEETTTC-----CEEEE-EE------CSSSCCCEEEECTTSS
T ss_pred EEEEEecCCCCeEEEEEECCC---CCEEEEEeCCCeEEEEECCCC-----CcceE-Ee------cCCCCEEEEEECCCCC
Confidence 356778889999999999998 789999999999999997652 22211 11 2677899999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
+|++++.|+.+++|++....... .......+..|...|.+++|+|+++.|++++.|+.|
T Consensus 120 -~lasg~~d~~i~v~~~~~~~~~~--------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v 178 (354)
T 2pbi_B 120 -AIACGGLDNKCSVYPLTFDKNEN--------------------MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTC 178 (354)
T ss_dssp -EEEEESTTSEEEEEECCCCTTCC--------------------SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred -EEEEeeCCCCEEEEEEecccccc--------------------ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcE
Confidence 99999999999999987532110 012345677899999999999999999999999999
Q ss_pred EEEeCCCCeEEEeeeecCCceEEEEEcc--CCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCC
Q 008939 324 RVFDYSKEQLICGGKSYYGALLCCAWSM--DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSD 401 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~l~~sp--dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~d 401 (548)
++||+++++++..+.+|...|.+++|+| ++++|++|+.|+.|++||+++++++..+.+|...|.+++|+| +
T Consensus 179 ~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-------~ 251 (354)
T 2pbi_B 179 ALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-------S 251 (354)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-------T
T ss_pred EEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC-------C
Confidence 9999999999999999999999999988 568999999999999999999999999999999999999999 8
Q ss_pred CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEe
Q 008939 402 GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH 481 (548)
Q Consensus 402 g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~ 481 (548)
+ .+|++++.|+.|++||++.++.+..+..
T Consensus 252 ~------~~l~s~s~D~~v~lwd~~~~~~~~~~~~--------------------------------------------- 280 (354)
T 2pbi_B 252 G------DAFASGSDDATCRLYDLRADREVAIYSK--------------------------------------------- 280 (354)
T ss_dssp S------SEEEEEETTSCEEEEETTTTEEEEEECC---------------------------------------------
T ss_pred C------CEEEEEeCCCeEEEEECCCCcEEEEEcC---------------------------------------------
Confidence 8 7999999999999999998876543322
Q ss_pred ecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 482 RVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 482 ~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
..+...+++++|+|++ |++++.|+.|++||+..+.. ....|...|. +++||+++|+++...|.+
T Consensus 281 ~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v 350 (354)
T 2pbi_B 281 ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTL 350 (354)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCE
Confidence 1234568899999974 99999999999999876552 3346777776 789999999999887654
No 24
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-37 Score=335.08 Aligned_cols=354 Identities=16% Similarity=0.215 Sum_probs=292.8
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCC--CCCeEEEecCCCC-ceEEEecC--CCCCCceEEEEEcCCcEE
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQD--KDPIKSIHFSNSN-PVCHAFDQ--DAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~--~~~i~~~~~~~~~-~~~~~~~p--~~~~~~~l~~g~~dg~I~ 201 (548)
..|.+.+.+++|+|+|++++++.++.|+|||++++. .+.+..+..|... +.+++|+| + +.+|++++.||.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~---~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG---SQYLCSGDESGKVI 91 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTT---CCEEEEEETTSEEE
T ss_pred CCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCC---CCEEEEecCCCEEE
Confidence 467888999999999999999997799999999751 0488888889999 99999999 8 78999999999999
Q ss_pred EEEeeecccc--cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC----CcEEEEEcCCCCCCCCCcccccc
Q 008939 202 SVSLRQQLQD--VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD----GNLYVYEKSKDGAGDSSFPVIKD 275 (548)
Q Consensus 202 iwdl~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~ 275 (548)
+||+.+.... ......... ..|...|.+++|+|++. +|++++.+ +.|++||..
T Consensus 92 vw~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~v~~~d~~-------------- 150 (615)
T 1pgu_A 92 VWGWTFDKESNSVEVNVKSEF------QVLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWDSG-------------- 150 (615)
T ss_dssp EEEEEEEGGGTEEEEEEEEEE------ECCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEETTTC--------------
T ss_pred EEeCCCCcccccccccccchh------hcccccEEEEEEeCCCC-EEEEeccCCCCccEEEEEECC--------------
Confidence 9999742000 001111111 13788999999999999 88888887 688888732
Q ss_pred cceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCeEEEeeeecCC---ceEEEEEcc
Q 008939 276 QTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQLICGGKSYYG---ALLCCAWSM 351 (548)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~---~v~~l~~sp 351 (548)
+.+..+..|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|
T Consensus 151 --------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 216 (615)
T 1pgu_A 151 --------------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP 216 (615)
T ss_dssp --------------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS
T ss_pred --------------CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC
Confidence 24566778889999999999997 899999999999999999999999999999 999999999
Q ss_pred C-CCEEEEEeCCCeEEEEECCCceeEEec-c---CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 352 D-GKYILTGGEDDLVQVWSMEDRKVVAWG-E---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 352 d-g~~l~sgs~dg~I~vwd~~~~~~~~~~-~---~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+ +++|++++.|+.|++||+++++.+..+ . .|...|.+++|+ ++ .+|++++.|+.|++||++
T Consensus 217 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~------~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 217 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--------DS------QKFATVGADATIRVWDVT 282 (615)
T ss_dssp TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--------SS------SEEEEEETTSEEEEEETT
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc--------CC------CEEEEEcCCCcEEEEECC
Confidence 9 999999999999999999999999998 6 899999999996 33 589999999999999999
Q ss_pred CCeEEeeeecCC-----CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEE
Q 008939 427 MDEIVVPLRRGP-----LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTV 501 (548)
Q Consensus 427 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~ 501 (548)
+++++..+.... ....+.+. ....+..+..++.+++||+...+++..+.+|...|++++| |+ |+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-l~~~ 353 (615)
T 1pgu_A 283 TSKCVQKWTLDKQQLGNQQVGVVAT-------GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-LISG 353 (615)
T ss_dssp TTEEEEEEECCTTCGGGCEEEEEEE-------ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-TEEE
T ss_pred CCcEEEEEcCCCCcccCceeEEEeC-------CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-cEEE
Confidence 999988887642 11222222 2456788888999999999999999999999999999999 99 9999
Q ss_pred ECCCeEEEEeCCCCCccccCCCCcEEEec-CCCCceEeeecccc
Q 008939 502 CREGHIKIWMRPGVAESQSSSSETVLSTS-SKDKPLLSSKVVTS 544 (548)
Q Consensus 502 s~Dg~I~iW~~~~~~~~~~~~~~~v~~~s-~d~~~l~s~~~~g~ 544 (548)
+.||.|++|++. ... ..|...+.++. ++++.|+++...|.
T Consensus 354 ~~dg~i~~w~~~--~~~-~~~~~~v~~~~~~~~~~l~~~~~d~~ 394 (615)
T 1pgu_A 354 SYDGRIMEWSSS--SMH-QDHSNLIVSLDNSKAQEYSSISWDDT 394 (615)
T ss_dssp ETTSCEEETTTT--EEE-CCCCSCEEEEECCSTTCCEEEETTTE
T ss_pred CCCCeEEEEEch--hhc-CcccCceEEEEECCCcEEEEEeCCCC
Confidence 999999999987 222 56666776333 55677777766543
No 25
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.2e-37 Score=359.21 Aligned_cols=367 Identities=16% Similarity=0.190 Sum_probs=295.7
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
.+...+|...|.+++|+|+|+++++++.| .|+|||+.++. .+..+..|...+.+++|+|+ +.+|++++.||.|+
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~--~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE--KLLDIKAHEDEVLCCAFSSD---DSYIATCSADKKVK 682 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTT---SSEEEEEETTSEEE
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--EEEEeccCCCCEEEEEEecC---CCEEEEEeCCCeEE
Confidence 45667899999999999999999998887 99999999855 88899999999999999998 88999999999999
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD-GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
+||+.+ ++.+.. .. .|...|.+++|+|++. .++++++.|+.|++||+++
T Consensus 683 vwd~~~-----~~~~~~-~~------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~------------------ 732 (1249)
T 3sfz_A 683 IWDSAT-----GKLVHT-YD------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ------------------ 732 (1249)
T ss_dssp EEETTT-----CCEEEE-EE------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS------------------
T ss_pred EEECCC-----CceEEE-Ec------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC------------------
Confidence 999876 222221 11 3789999999999532 3889999999999999986
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee-----------------------
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG----------------------- 337 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~----------------------- 337 (548)
...+..+..|...|.+++|+|++++|++++.||.|++||+.+++....+
T Consensus 733 --------~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1249)
T 3sfz_A 733 --------KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC 804 (1249)
T ss_dssp --------SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred --------cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence 2346667788899999999999999999999999999998776543322
Q ss_pred --------------------------------eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCC
Q 008939 338 --------------------------------KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 385 (548)
Q Consensus 338 --------------------------------~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~ 385 (548)
.+|...|.+++|+|+++++++++.|+.|++||+.++..+..+.+|...
T Consensus 805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~ 884 (1249)
T 3sfz_A 805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW 884 (1249)
T ss_dssp CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC
T ss_pred EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc
Confidence 156778999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC--------------------------------------
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM-------------------------------------- 427 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~-------------------------------------- 427 (548)
|.+++|+| +| .+|++++.|+.|++||+..
T Consensus 885 v~~v~~sp-------dg------~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1249)
T 3sfz_A 885 VHGVMFSP-------DG------SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAG 951 (1249)
T ss_dssp EEEEEECT-------TS------SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEE
T ss_pred eEEEEECC-------CC------CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEec
Confidence 99999999 87 6788888888888887532
Q ss_pred -----------------------------------------CeEEeeeec-CCCCCCceecCCCC---ccccC-------
Q 008939 428 -----------------------------------------DEIVVPLRR-GPLGGSPTFSTGSQ---SAHWD------- 455 (548)
Q Consensus 428 -----------------------------------------~~~~~~~~~-~~~~~~~~~~~~~~---~~~~d------- 455 (548)
++.+..+.. ...+..+.|++++. ....|
T Consensus 952 ~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 952 KTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp SSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred CcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 222222221 13455566666653 11112
Q ss_pred ------------------------CeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEE
Q 008939 456 ------------------------NVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKI 509 (548)
Q Consensus 456 ------------------------~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~i 509 (548)
..+..+..++.+++||+...+++..+.+|...|++++|+|++ |++++.||.|++
T Consensus 1032 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~i 1111 (1249)
T 3sfz_A 1032 WQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1111 (1249)
T ss_dssp TTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCE
T ss_pred CCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 223445557788899999999999999999999999999984 999999999999
Q ss_pred EeCCCCCc--cccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 510 WMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 510 W~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
||+..... ....|...+. +++||+++|+++...|.+
T Consensus 1112 wd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i 1151 (1249)
T 3sfz_A 1112 WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1151 (1249)
T ss_dssp ECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCC
T ss_pred EECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEE
Confidence 99876653 3335666666 789999999999887654
No 26
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-38 Score=320.79 Aligned_cols=327 Identities=12% Similarity=0.196 Sum_probs=270.6
Q ss_pred cccCCCCCCceeEEeCCCCC-EEEEecCC-eEEEEEc----cCCCC----CCeEEEec----------CCCCceEEEecC
Q 008939 124 LGASSSSTSMTNTNFDGKGT-YIIFNVGD-AIFISDL----NSQDK----DPIKSIHF----------SNSNPVCHAFDQ 183 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~-~l~~~~~d-~v~vwd~----~~~~~----~~i~~~~~----------~~~~~~~~~~~p 183 (548)
+....|...|.+++|+|+|. ++++++.| .|+|||+ .++.. .....+.. +...+.+++|+|
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence 44455678999999999999 99998887 9999999 66431 02334433 456899999999
Q ss_pred CCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 008939 184 DAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKD 263 (548)
Q Consensus 184 ~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~ 263 (548)
+ +.+|++++.||.|++||... +.+.... .|...|++++|+|++. +|++++.||.|++||+...
T Consensus 119 ~---~~~l~~~~~dg~i~i~~~~~------~~~~~~~-------~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~ 181 (425)
T 1r5m_A 119 D---GNSIVTGVENGELRLWNKTG------ALLNVLN-------FHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISG 181 (425)
T ss_dssp T---SSEEEEEETTSCEEEEETTS------CEEEEEC-------CCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTT
T ss_pred C---CCEEEEEeCCCeEEEEeCCC------Ceeeecc-------CCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCC
Confidence 8 88999999999999999432 2222111 3789999999999999 9999999999999999762
Q ss_pred CCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC---------------CeEEEEECCCCCEEEEEECCCeEEEEeC
Q 008939 264 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG---------------SINSIAFSTDGTYLATVGRDGYLRVFDY 328 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------------~v~~~~~sp~g~~l~s~~~dg~v~vwd~ 328 (548)
. .+..+..+.. .+.+++|+|++ .+++++.|+.|++||+
T Consensus 182 ~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~ 234 (425)
T 1r5m_A 182 T--------------------------VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQI 234 (425)
T ss_dssp E--------------------------EEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEET
T ss_pred c--------------------------EEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEc
Confidence 1 1222222222 38999999985 5888999999999999
Q ss_pred CCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCcccee
Q 008939 329 SKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 329 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+++|+| ++
T Consensus 235 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-------~~------ 301 (425)
T 1r5m_A 235 TEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-------DD------ 301 (425)
T ss_dssp TCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEET-------TT------
T ss_pred CCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECC-------CC------
Confidence 99998888889999999999999999999999999999999999999999999999999999999 77
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCC-----------
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS----------- 476 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~----------- 476 (548)
+|++++.|+.|++||+++++++..+..+ ..+..+.+++++ ..+.++..++.+++||+....
T Consensus 302 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~------~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 374 (425)
T 1r5m_A 302 -KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG------QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRD 374 (425)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS------SEEEEEETTSCEEEEECHHHHC----------
T ss_pred -EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC------CEEEEEECCCeEEEEECCCCccceeeeecccc
Confidence 7999999999999999999998888753 456677787765 566788889999999998877
Q ss_pred ---------ceEEeecCCC--CeeEEEEeCC--eEEEEECCCeEEEEeCCC
Q 008939 477 ---------PLVAHRVHTE--PLSGLIFTQE--SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 477 ---------~~~~~~~h~~--~V~~l~fspd--~l~t~s~Dg~I~iW~~~~ 514 (548)
++..+.+|.. .|++++|+|+ .|++++.||.|++|++++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 375 GILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp ----CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred cccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 8899999977 9999999998 489999999999999874
No 27
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.4e-37 Score=305.68 Aligned_cols=298 Identities=14% Similarity=0.205 Sum_probs=245.5
Q ss_pred ccCCCCCCceeEEeCCC-CCEEEEecCC-eEEEEEccCCCC---CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc
Q 008939 125 GASSSSTSMTNTNFDGK-GTYIIFNVGD-AIFISDLNSQDK---DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD 199 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~-g~~l~~~~~d-~v~vwd~~~~~~---~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~ 199 (548)
.+.+|.+.|++++|+|+ +++|++++.| +|+|||+..... .++..+..|...|.+++|+|+ +.+|++++.|+.
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d---g~~l~s~~~d~~ 109 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD---GQFALSGSWDGT 109 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT---SSEEEEEETTSE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC---CCEEEEEccccc
Confidence 46789999999999998 6899998888 999999986542 245667778999999999998 889999999999
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
|++|+.... ....... .+...+..+.+++++. +|++++.|+.+++||+....
T Consensus 110 i~~~~~~~~-----~~~~~~~-------~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~--------------- 161 (340)
T 4aow_A 110 LRLWDLTTG-----TTTRRFV-------GHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVC--------------- 161 (340)
T ss_dssp EEEEETTTT-----EEEEEEE-------CCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCE---------------
T ss_pred ceEEeeccc-----ceeeeec-------CCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCc---------------
Confidence 999998762 1111111 2567888999999998 89999999999999986521
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCCC--CEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEE
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDG--TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
........|...+..++|++++ .++++++.|+.|++||+++++++..+.+|.+.|.+++|+|++++|+
T Consensus 162 ----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 231 (340)
T 4aow_A 162 ----------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCA 231 (340)
T ss_dssp ----------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ----------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEE
Confidence 1223345577899999999854 5789999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
+|+.|+.|++||+++.+++..+. +...|.++.|+| ++ .+++++.|+.|++||++.+.++..+...
T Consensus 232 s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-------~~-------~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 296 (340)
T 4aow_A 232 SGGKDGQAMLWDLNEGKHLYTLD-GGDIINALCFSP-------NR-------YWLCAATGPSIKIWDLEGKIIVDELKQE 296 (340)
T ss_dssp EEETTCEEEEEETTTTEEEEEEE-CSSCEEEEEECS-------SS-------SEEEEEETTEEEEEETTTTEEEEEECCC
T ss_pred EEeCCCeEEEEEeccCceeeeec-CCceEEeeecCC-------CC-------ceeeccCCCEEEEEECCCCeEEEecccc
Confidence 99999999999999999998888 456899999998 77 5677888999999999998887766541
Q ss_pred CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCC
Q 008939 438 PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 438 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~ 515 (548)
.......+|...|++++|+|+ .|++|+.||.|+|||+.++
T Consensus 297 --------------------------------------~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 297 --------------------------------------VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp ---------------------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred --------------------------------------ceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 111233478999999999998 4999999999999998875
Q ss_pred C
Q 008939 516 A 516 (548)
Q Consensus 516 ~ 516 (548)
.
T Consensus 339 t 339 (340)
T 4aow_A 339 T 339 (340)
T ss_dssp -
T ss_pred C
Confidence 3
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.1e-37 Score=307.16 Aligned_cols=325 Identities=11% Similarity=0.107 Sum_probs=267.9
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
+...+..++|+|+|++++++..+ .+.+|+..... .......|...+.+++|+|+ +.+|++++ ||.|++||+..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~---~~~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA--RQINTLNHGEVVCAVTISNP---TRHVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE--EEEEEECCSSCCCEEEECSS---SSEEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc--ccceeccCCCceEEEEEecC---CcEEEEcC-CCeEEEEECCC
Confidence 45677899999999999987655 66666554321 33333458889999999998 77899888 99999999976
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
.. ....... +. ...|...|++++|+|+++ +|++++.||.|++||++...
T Consensus 82 ~~--~~~~~~~---~~--~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~----------------------- 130 (337)
T 1gxr_A 82 PG--NKSPVSQ---LD--CLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPT----------------------- 130 (337)
T ss_dssp TT--CCSCSEE---EE--CSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC------------------------
T ss_pred CC--ceeeeec---cc--ccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCC-----------------------
Confidence 21 1111111 11 112788999999999998 99999999999999998621
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEE
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQV 367 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~v 367 (548)
......+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...+.+++|+|++++|++++.|+.|++
T Consensus 131 -~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~ 209 (337)
T 1gxr_A 131 -PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209 (337)
T ss_dssp --EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred -cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEE
Confidence 1134556778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecC
Q 008939 368 WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFST 447 (548)
Q Consensus 368 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 447 (548)
||+++++.+..+. |...|.+++|+| ++ .+|++++.|+.|++||+++++..........+..+.+++
T Consensus 210 ~d~~~~~~~~~~~-~~~~v~~~~~s~-------~~------~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~ 275 (337)
T 1gxr_A 210 WDLREGRQLQQHD-FTSQIFSLGYCP-------TG------EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY 275 (337)
T ss_dssp EETTTTEEEEEEE-CSSCEEEEEECT-------TS------SEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT
T ss_pred EECCCCceEeeec-CCCceEEEEECC-------CC------CEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECC
Confidence 9999999888776 888999999999 88 789999999999999999988765544545667778887
Q ss_pred CCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeC
Q 008939 448 GSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMR 512 (548)
Q Consensus 448 ~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~ 512 (548)
++ ..+..+..++.+++|++...+++.. ..|...|.+++|+|+ .|++++.||.|++|++
T Consensus 276 ~~------~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 276 CG------KWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TS------SEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CC------CEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 75 4567778889999999998887754 458899999999997 4999999999999996
No 29
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.7e-38 Score=314.93 Aligned_cols=310 Identities=13% Similarity=0.167 Sum_probs=222.2
Q ss_pred EEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc------CCcEEEEEeeecc
Q 008939 136 TNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN------SGDVYSVSLRQQL 209 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~------dg~I~iwdl~~~~ 209 (548)
+.+.+++.++..++......|++.... + ..|...|.+++|+|+ |.+|++|+. |+.|++|+.....
T Consensus 11 ~d~g~~~~~~~~~g~~~~~~w~~p~~~--p----~~H~~~V~~v~fSpD---G~~las~s~d~~~~wd~~v~~~~~~~~~ 81 (357)
T 4g56_B 11 VDLGTENLYFQSNGSSKGSAWGRPVTA--P----ACMEVQIGAVRYRRD---GALLLAASSLSSRTWGGSIWVFKDPEGA 81 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSS---SCEEEEEECSSSSSCCEEEEEESSCC--
T ss_pred CCCCccceEEecCCCccccccCCCCCC--c----ccccCCEEEEEECCC---CCEEEEEcCCCCccccCeEEEEECCCCC
Confidence 444455555555444588999986422 2 347788999999999 889999997 6778888876521
Q ss_pred cccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 210 QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
.. ........ .|...|++++|+|++. +++++.||.|+|||+.+.....
T Consensus 82 ~~-~~~~~~~~-------~~~~~V~~~~~s~d~~--~l~~s~dg~v~lWd~~~~~~~~---------------------- 129 (357)
T 4g56_B 82 PN-ESLCTAGV-------QTEAGVTDVAWVSEKG--ILVASDSGAVELWEILEKESLL---------------------- 129 (357)
T ss_dssp -C-GGGCSEEE-------ECSSCEEEEEEETTTE--EEEEETTSCEEEC--------C----------------------
T ss_pred cc-eeEecccC-------CCCCCEEEEEEcCCCC--EEEEECCCEEEEeeccccceeE----------------------
Confidence 11 11111111 2788899999999975 6778899999999997632110
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEE
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVW 368 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vw 368 (548)
........|...|++++|+|++++|++++.|+.|++||+++++++..+.+|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 130 ~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~w 209 (357)
T 4g56_B 130 VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209 (357)
T ss_dssp CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEEC
T ss_pred EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEE
Confidence 11123446889999999999999999999999999999999999999999999999999999985 78999999999999
Q ss_pred ECCCceeEEecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceec
Q 008939 369 SMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFS 446 (548)
Q Consensus 369 d~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 446 (548)
|+++++++..+. .|...|.+++|+| ++. .+|++++.|+.|++||+++++++.
T Consensus 210 d~~~~~~~~~~~~~~~~~~v~~v~~sp-------~~~-----~~la~g~~d~~i~~wd~~~~~~~~-------------- 263 (357)
T 4g56_B 210 DTRKPKPATRIDFCASDTIPTSVTWHP-------EKD-----DTFACGDETGNVSLVNIKNPDSAQ-------------- 263 (357)
T ss_dssp CTTSSSCBCBCCCTTCCSCEEEEEECT-------TST-----TEEEEEESSSCEEEEESSCGGGCE--------------
T ss_pred ECCCCceeeeeeeccccccccchhhhh-------ccc-----ceEEEeecccceeEEECCCCcEeE--------------
Confidence 999988766544 5778899999999 642 589999999999999998766443
Q ss_pred CCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEeCCCCCc-cccCC
Q 008939 447 TGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGVAE-SQSSS 522 (548)
Q Consensus 447 ~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~~~~-~~~~~ 522 (548)
.+.+|...|++|+|+|+ .|++++.|++|+|||+..++. ....|
T Consensus 264 ---------------------------------~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H 310 (357)
T 4g56_B 264 ---------------------------------TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSH 310 (357)
T ss_dssp ---------------------------------EECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCC
T ss_pred ---------------------------------EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCC
Confidence 34468899999999996 389999999999999987663 34477
Q ss_pred CCcEE--EecC-CCCceEeeeccccc
Q 008939 523 SETVL--STSS-KDKPLLSSKVVTSS 545 (548)
Q Consensus 523 ~~~v~--~~s~-d~~~l~s~~~~g~~ 545 (548)
...|. +|+| |+++|+++...|.+
T Consensus 311 ~~~V~~vafsP~d~~~l~s~s~Dg~v 336 (357)
T 4g56_B 311 RDFVTGVAWSPLDHSKFTTVGWDHKV 336 (357)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred CCCEEEEEEeCCCCCEEEEEcCCCeE
Confidence 88887 7788 78899999877654
No 30
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-38 Score=320.13 Aligned_cols=328 Identities=13% Similarity=0.179 Sum_probs=257.1
Q ss_pred CCCceeEEeCCCCC-EEEEe----------cCC-eEEEEEccCCCCC-CeEEEecCCCCceEEEecCCCCCCceEEEEEc
Q 008939 130 STSMTNTNFDGKGT-YIIFN----------VGD-AIFISDLNSQDKD-PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN 196 (548)
Q Consensus 130 ~~~v~~~~~~~~g~-~l~~~----------~~d-~v~vwd~~~~~~~-~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~ 196 (548)
...+.+++|+|+|+ +++++ +.| .|+|||+.++... ++..+ .+...+.+++|+|+ +.+|++++.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~---~~~l~~~~~ 87 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHN---NKIIAGALD 87 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSS---SSCEEEEES
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCC---CCeEEEEcc
Confidence 34677899999998 88887 566 9999999875422 34333 36789999999998 789999999
Q ss_pred CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccc
Q 008939 197 SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQ 276 (548)
Q Consensus 197 dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 276 (548)
||.|++||+.... .+....... ..|...|++++|+|++..+|++++.||.|++||+.........+..
T Consensus 88 dg~v~vw~~~~~~--~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---- 155 (416)
T 2pm9_A 88 NGSLELYSTNEAN--NAINSMARF------SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP---- 155 (416)
T ss_dssp SSCEEEECCSSTT--SCCCEEEEC------CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC----
T ss_pred CCeEEEeeccccc--ccccchhhc------cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccc----
Confidence 9999999987621 111111111 2388999999999984339999999999999999864311110000
Q ss_pred ceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeec------CCceEEEEE
Q 008939 277 TQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSY------YGALLCCAW 349 (548)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~------~~~v~~l~~ 349 (548)
..+..+..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+ ...|.+++|
T Consensus 156 -------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 156 -------------LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp -------------BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred -------------cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE
Confidence 011223457789999999998 789999999999999999999998888776 788999999
Q ss_pred ccCC-CEEEEEeCCC---eEEEEECCCc-eeEEecc-CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 008939 350 SMDG-KYILTGGEDD---LVQVWSMEDR-KVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 423 (548)
Q Consensus 350 spdg-~~l~sgs~dg---~I~vwd~~~~-~~~~~~~-~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lw 423 (548)
+|++ .+|++++.|+ .|++||++++ +++..+. +|...|.+++|+|. ++ .+|++++.|+.|++|
T Consensus 223 ~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~------~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ------DE------HLLLSSGRDNTVLLW 290 (416)
T ss_dssp CSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSS------CS------SCEEEEESSSEEEEE
T ss_pred CCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCC------CC------CeEEEEeCCCCEEEe
Confidence 9997 6899999998 9999999986 6777888 89999999999971 44 689999999999999
Q ss_pred ECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC---eEEE
Q 008939 424 DLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLT 500 (548)
Q Consensus 424 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd---~l~t 500 (548)
|+++++++..+ .+|...|++++|+|+ .|++
T Consensus 291 d~~~~~~~~~~-----------------------------------------------~~~~~~v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 291 NPESAEQLSQF-----------------------------------------------PARGNWCFKTKFAPEAPDLFAC 323 (416)
T ss_dssp CSSSCCEEEEE-----------------------------------------------ECSSSCCCCEEECTTCTTEEEE
T ss_pred eCCCCccceee-----------------------------------------------cCCCCceEEEEECCCCCCEEEE
Confidence 99987765433 458889999999996 4899
Q ss_pred EECCCeEEEEeCCCCCccccC-------------------------------------CCCcE--EEecCCCCceEeeec
Q 008939 501 VCREGHIKIWMRPGVAESQSS-------------------------------------SSETV--LSTSSKDKPLLSSKV 541 (548)
Q Consensus 501 ~s~Dg~I~iW~~~~~~~~~~~-------------------------------------~~~~v--~~~s~d~~~l~s~~~ 541 (548)
++.|+.|++|++......... +...+ .+|+|||++|+++..
T Consensus 324 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~ 403 (416)
T 2pm9_A 324 ASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD 403 (416)
T ss_dssp CCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT
T ss_pred EecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCC
Confidence 999999999998776532211 33344 389999999999987
Q ss_pred cccc
Q 008939 542 VTSS 545 (548)
Q Consensus 542 ~g~~ 545 (548)
.|.+
T Consensus 404 d~~v 407 (416)
T 2pm9_A 404 GKGV 407 (416)
T ss_dssp SSCB
T ss_pred CCeE
Confidence 6544
No 31
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-36 Score=354.08 Aligned_cols=386 Identities=17% Similarity=0.215 Sum_probs=293.7
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
+.+|...|.+++|+|+|+++++++.| .|+|||+.++. .+..+..|...+.+++|+|+.. ...+++|+.||.|++||
T Consensus 653 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~~~l~sg~~d~~v~vwd 729 (1249)
T 3sfz_A 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK--LVHTYDEHSEQVNCCHFTNKSN-HLLLATGSNDFFLKLWD 729 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSSSS-CCEEEEEETTSCEEEEE
T ss_pred eccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc--eEEEEcCCCCcEEEEEEecCCC-ceEEEEEeCCCeEEEEE
Confidence 45799999999999999999998887 99999999854 8889999999999999999633 66899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC-----------------
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD----------------- 267 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~----------------- 267 (548)
+++. +... .. ..|...|++++|+|++. +|++++.||.|++||+.......
T Consensus 730 ~~~~-----~~~~-~~------~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1249)
T 3sfz_A 730 LNQK-----ECRN-TM------FGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED 796 (1249)
T ss_dssp TTSS-----SEEE-EE------CCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------C
T ss_pred CCCc-----chhh-ee------cCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCcccc
Confidence 9862 2221 11 13889999999999999 99999999999999997632100
Q ss_pred -----CCcccccccceeeeecCC------CCCCCCeeEee-ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEE
Q 008939 268 -----SSFPVIKDQTQFSVAHPR------YSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC 335 (548)
Q Consensus 268 -----~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~ 335 (548)
.......+...+...... ......+..+. .|...|.+++|+|+++++++++.|+.|++||+.+++.+.
T Consensus 797 ~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~ 876 (1249)
T 3sfz_A 797 VEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA 876 (1249)
T ss_dssp CCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEE
T ss_pred ccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceee
Confidence 000001111111111000 01112222222 688999999999999999999999999999999999999
Q ss_pred eeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC--------------------------------------------
Q 008939 336 GGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME-------------------------------------------- 371 (548)
Q Consensus 336 ~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~-------------------------------------------- 371 (548)
.+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 877 ~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1249)
T 3sfz_A 877 DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence 999999999999999999999999999998888853
Q ss_pred -----------------------------------CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC
Q 008939 372 -----------------------------------DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416 (548)
Q Consensus 372 -----------------------------------~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~ 416 (548)
+++.+..+.+|...|.+++|+| +| .+|++++.
T Consensus 957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-------dg------~~l~s~~~ 1023 (1249)
T 3sfz_A 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-------DG------KTLISSSE 1023 (1249)
T ss_dssp EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-------SS------SCEEEECS
T ss_pred EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-------CC------CEEEEEcC
Confidence 2233445567999999999999 88 68999999
Q ss_pred CCeEEEEECCCCeEEeeeecCCCCCCceecCCCC---------cccc--------------------------CCeeeec
Q 008939 417 DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ---------SAHW--------------------------DNVCPVG 461 (548)
Q Consensus 417 Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--------------------------d~~~~~g 461 (548)
|+.|++||+.+++.+........+..+.+++++. ...| ...+..+
T Consensus 1024 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 1103 (1249)
T 3sfz_A 1024 DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1103 (1249)
T ss_dssp SSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEE
T ss_pred CCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEE
Confidence 9999999988877654433322222232222211 0000 1235677
Q ss_pred ccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCccc-----------cCCCCcEE-
Q 008939 462 TLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQ-----------SSSSETVL- 527 (548)
Q Consensus 462 ~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~-----------~~~~~~v~- 527 (548)
..++.+++||+....++..+.+|...|++++|+|++ |++++.||.|++||+.++.... ..|...+.
T Consensus 1104 s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1183 (1249)
T 3sfz_A 1104 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1183 (1249)
T ss_dssp CCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCE
T ss_pred cCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEE
Confidence 778999999999999999999999999999999984 9999999999999998765322 23455454
Q ss_pred -EecCCCCceEeee
Q 008939 528 -STSSKDKPLLSSK 540 (548)
Q Consensus 528 -~~s~d~~~l~s~~ 540 (548)
+|+||+++|++++
T Consensus 1184 l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A 1184 VCFSPDSKTLVSAG 1197 (1249)
T ss_dssp EEECTTSSCEEEES
T ss_pred EEECCCCCEEEECC
Confidence 8999999999886
No 32
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.4e-37 Score=305.88 Aligned_cols=299 Identities=17% Similarity=0.244 Sum_probs=234.6
Q ss_pred CeEEEecCCC-CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 165 PIKSIHFSNS-NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 165 ~i~~~~~~~~-~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
.+..+..|+. .+.+++|+|+ +.+|++|+.|+.|++||+... . ...... ....|...|++++|+|++.
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~---g~~las~~~D~~i~iw~~~~~-----~-~~~~~~---~~~~h~~~v~~~~~sp~g~ 74 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPA---GTLLASCGGDRRIRIWGTEGD-----S-WICKSV---LSEGHQRTVRKVAWSPCGN 74 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTT---SSCEEEEETTSCEEEEEEETT-----E-EEEEEE---ECSSCSSCEEEEEECTTSS
T ss_pred EeeeecCCCCCcEEEEEECCC---CCEEEEEcCCCeEEEEEcCCC-----c-ceeeee---eccccCCcEEEEEECCCCC
Confidence 4566667777 8999999999 889999999999999998762 1 110000 0124889999999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
+|++|+.|+.|++||+.... ...+..+.+|...|.+++|+|++++|++++.|+.|
T Consensus 75 -~l~s~s~D~~v~iw~~~~~~------------------------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v 129 (345)
T 3fm0_A 75 -YLASASFDATTCIWKKNQDD------------------------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSV 129 (345)
T ss_dssp -EEEEEETTSCEEEEEECCC-------------------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred -EEEEEECCCcEEEEEccCCC------------------------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeE
Confidence 99999999999999987521 12356778899999999999999999999999999
Q ss_pred EEEeCCCC---eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce--eEEeccCCCCCeEEEEEecCCCCC
Q 008939 324 RVFDYSKE---QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK--VVAWGEGHNSWVSGVAFDSYWSQP 398 (548)
Q Consensus 324 ~vwd~~~~---~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~ 398 (548)
++||++++ +++..+..|...|.+++|+|++++|++++.|+.|++||+++++ +...+.+|...|.+++|+|
T Consensus 130 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp----- 204 (345)
T 3fm0_A 130 WVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP----- 204 (345)
T ss_dssp EEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-----
T ss_pred EEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-----
Confidence 99999865 3466778899999999999999999999999999999998875 4578889999999999999
Q ss_pred CCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCce
Q 008939 399 NSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPL 478 (548)
Q Consensus 399 ~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~ 478 (548)
+| .+|++++.|+.|+|||+........+ ... + ..+....+
T Consensus 205 --~g------~~l~s~s~D~~v~iW~~~~~~~~~~~---------~~~--~---------------------~~~~~~~~ 244 (345)
T 3fm0_A 205 --SG------QRLASCSDDRTVRIWRQYLPGNEQGV---------ACS--G---------------------SDPSWKCI 244 (345)
T ss_dssp --TS------SEEEEEETTSCEEEEEEECTTCTTCC---------CCC--------------------------CEEEEE
T ss_pred --CC------CEEEEEeCCCeEEEeccccCCCCccc---------eee--c---------------------cCCcccee
Confidence 98 79999999999999996432211000 000 0 00111223
Q ss_pred EEeec-CCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCcc-----------ccCCCCcEE--EecCCCC-ceEeeec
Q 008939 479 VAHRV-HTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAES-----------QSSSSETVL--STSSKDK-PLLSSKV 541 (548)
Q Consensus 479 ~~~~~-h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~-----------~~~~~~~v~--~~s~d~~-~l~s~~~ 541 (548)
..+.+ |...|++++|+|+ .|++++.|+.|++|+....... ...|...|. +|+|++. +|+++..
T Consensus 245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~ 324 (345)
T 3fm0_A 245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD 324 (345)
T ss_dssp EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEET
T ss_pred EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCC
Confidence 34444 8889999999997 4999999999999997654311 135677777 7889984 8999887
Q ss_pred cccc
Q 008939 542 VTSS 545 (548)
Q Consensus 542 ~g~~ 545 (548)
.|.+
T Consensus 325 Dg~v 328 (345)
T 3fm0_A 325 DGEV 328 (345)
T ss_dssp TSCE
T ss_pred CCcE
Confidence 7654
No 33
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=301.66 Aligned_cols=294 Identities=14% Similarity=0.144 Sum_probs=221.2
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc-----ccc-ceeeeeeeccC
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD-----VGK-KLVGAHHYNKD 225 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~-----~~~-~~~~~~~~~~~ 225 (548)
..+.|++.... +. .+...+.+++|+|+ |.+|++++ |+.+++||....... ... ......
T Consensus 15 ~~r~w~~~~~~--~~----~~~~~v~~~~fs~d---G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~----- 79 (344)
T 4gqb_B 15 AAREWNLPPNA--PA----CMERQLEAARYRSD---GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGV----- 79 (344)
T ss_dssp --------CCS--CS----SCCSEEEEEEECTT---SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEE-----
T ss_pred cccccCCCCCC--cc----cccCCEEEEEECCC---CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeee-----
Confidence 34677776432 21 24557899999999 77777665 778888875431110 001 011111
Q ss_pred CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 226 GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 226 ~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
.+...|++++|+|++ .|++|+.||.|+|||++++... ......+.+|.+.|+++
T Consensus 80 --~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~----------------------~~~~~~~~~H~~~V~~v 133 (344)
T 4gqb_B 80 --QTEAGVADLTWVGER--GILVASDSGAVELWELDENETL----------------------IVSKFCKYEHDDIVSTV 133 (344)
T ss_dssp --EESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSC----------------------EEEEEEEECCSSCEEEE
T ss_pred --ccCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCce----------------------eEeeccccCCCCCEEEE
Confidence 156789999999986 6889999999999999863210 00112345789999999
Q ss_pred EECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCCceeEEecc--CC
Q 008939 306 AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDRKVVAWGE--GH 382 (548)
Q Consensus 306 ~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~~~~~~~~~--~h 382 (548)
+|+|++++|++++.|+.|++||+++++++..+.+|...|.+++|+|++. +|++++.|+.|++||+++++++..+. .|
T Consensus 134 ~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 213 (344)
T 4gqb_B 134 SVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAP 213 (344)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeeccee
Confidence 9999999999999999999999999999999999999999999999985 78999999999999999998887775 46
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecc
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 462 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~ 462 (548)
...+.+++|+| ++. ++|++++.|+.|+|||+++++++.
T Consensus 214 ~~~~~~~~~~p-------~~~-----~~l~sg~~dg~v~~wd~~~~~~~~------------------------------ 251 (344)
T 4gqb_B 214 GYLPTSLAWHP-------QQS-----EVFVFGDENGTVSLVDTKSTSCVL------------------------------ 251 (344)
T ss_dssp CCCEEEEEECS-------SCT-----TEEEEEETTSEEEEEESCC--CCE------------------------------
T ss_pred eccceeeeecC-------CCC-----cceEEeccCCcEEEEECCCCcEEE------------------------------
Confidence 67899999998 542 588999999999999998876543
Q ss_pred cCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe---EEEEECCCeEEEEeCCCCCc-cccCCCCcEE--EecCCCCc-
Q 008939 463 LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTVCREGHIKIWMRPGVAE-SQSSSSETVL--STSSKDKP- 535 (548)
Q Consensus 463 ~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~---l~t~s~Dg~I~iW~~~~~~~-~~~~~~~~v~--~~s~d~~~- 535 (548)
.+.+|...|++|+|+|++ |++++.|++|+|||+..++. ...+|...|. +|+|+++.
T Consensus 252 -----------------~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~l 314 (344)
T 4gqb_B 252 -----------------SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSL 314 (344)
T ss_dssp -----------------EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTE
T ss_pred -----------------EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeE
Confidence 345689999999999963 89999999999999987763 3447888887 78899976
Q ss_pred eEeeeccccc
Q 008939 536 LLSSKVVTSS 545 (548)
Q Consensus 536 l~s~~~~g~~ 545 (548)
|+++...|.+
T Consensus 315 las~s~D~~v 324 (344)
T 4gqb_B 315 LTTVGWDHQV 324 (344)
T ss_dssp EEEEETTSCE
T ss_pred EEEEcCCCeE
Confidence 5577666554
No 34
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-35 Score=298.71 Aligned_cols=313 Identities=13% Similarity=0.129 Sum_probs=254.5
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
.+.+.+|...|.+++|+|+++++++++.| .|+|||+.++. .+..+..|...+.+++|+|+ +.+|++++.||.|+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE--RLGTLDGHTGTIWSIDVDCF---TKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC--EEEEECCCSSCEEEEEECTT---SSEEEEEETTTEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch--hhhhhhhcCCcEEEEEEcCC---CCEEEEEeCCCeEE
Confidence 45677899999999999999999998877 99999999854 88888889999999999998 88999999999999
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCCCCCCCccccccc
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-----GNLYVYEKSKDGAGDSSFPVIKDQ 276 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~ 276 (548)
+||+++ ++ ...... +...|.+++|+|++. +|++++.+ +.|++||+....... .+..
T Consensus 100 iwd~~~-----~~-~~~~~~-------~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~-~~~~---- 160 (369)
T 3zwl_B 100 LWDVSN-----GQ-CVATWK-------SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATH-ELTK---- 160 (369)
T ss_dssp EEETTT-----CC-EEEEEE-------CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTC-CEEE----
T ss_pred EEECCC-----Cc-EEEEee-------cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccce-eecc----
Confidence 999976 22 222222 577899999999999 89999988 999999998643211 1111
Q ss_pred ceeeeecCCCCCCCCeeEeeecCC--CeEEEEECCCCCEEEEEECCCeEEEEeCCC-CeEEEeeeecCCceEEEEEccCC
Q 008939 277 TQFSVAHPRYSKSNPIARWHICQG--SINSIAFSTDGTYLATVGRDGYLRVFDYSK-EQLICGGKSYYGALLCCAWSMDG 353 (548)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~~~v~~l~~spdg 353 (548)
....++..+..|.+ .+.+++|+|++++|++++.||.|++||+++ .+.+..+..|...|.+++|+|++
T Consensus 161 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 230 (369)
T 3zwl_B 161 ----------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL 230 (369)
T ss_dssp ----------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred ----------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC
Confidence 01234556666666 999999999999999999999999999998 78888899999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 354 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
++|++++.|+.|++||+++++.+..+. +...+..++|+| ++ .++++++.++.+.+|.......
T Consensus 231 ~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-------~~------~~l~~~~~~~~~~~~~~~~~~~--- 293 (369)
T 3zwl_B 231 TYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-------LK------EFIILGGGQEAKDVTTTSANEG--- 293 (369)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-------SS------SEEEEEECCC---------------
T ss_pred CEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC-------CC------ceEEEeecCCCceEEEEecCCC---
Confidence 999999999999999999999988888 889999999999 88 7899999988665555433211
Q ss_pred eecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEe
Q 008939 434 LRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWM 511 (548)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~ 511 (548)
...+++||....+++..+.+|...|++++|+|+ .|++++.||.|++|+
T Consensus 294 ------------------------------~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 294 ------------------------------KFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp -------------------------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ------------------------------cceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 112345666666667777889999999999997 499999999999999
Q ss_pred CCCCC
Q 008939 512 RPGVA 516 (548)
Q Consensus 512 ~~~~~ 516 (548)
+....
T Consensus 344 ~~~~~ 348 (369)
T 3zwl_B 344 FEKSY 348 (369)
T ss_dssp ECHHH
T ss_pred Ccccc
Confidence 87643
No 35
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.2e-36 Score=295.77 Aligned_cols=282 Identities=16% Similarity=0.186 Sum_probs=232.0
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
...+..|...|.+++|+|+. +.+|++|+.|+.|++||+.......+..+.. ...|...|++++|+|++. +
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~--~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~-------~~~h~~~v~~~~~s~dg~-~ 79 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQ--PNLLLSASRDKTLISWKLTGDDQKFGVPVRS-------FKGHSHIVQDCTLTADGA-Y 79 (319)
T ss_dssp EEEECCCSSCEEEEEECSSC--TTEEEEEETTSEEEEEEEEEETTEEEEEEEE-------EECCSSCEEEEEECTTSS-E
T ss_pred EEEEccccceEEEEEccCCC--ccEEEEecCCccEEEecCCCCCccccccceE-------EeCCcccEEEEEECCCCC-E
Confidence 44667788999999999972 4689999999999999997532111111111 124899999999999999 9
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 325 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~v 325 (548)
|++++.|++|++||+.+ .+.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 80 l~s~s~D~~v~~wd~~~--------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~v 133 (319)
T 3frx_A 80 ALSASWDKTLRLWDVAT--------------------------GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133 (319)
T ss_dssp EEEEETTSEEEEEETTT--------------------------TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred EEEEeCCCEEEEEECCC--------------------------CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 99999999999999986 2456778899999999999999999999999999999
Q ss_pred EeCCCCeEEEeeeecCCceEEEEEccC------CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCC
Q 008939 326 FDYSKEQLICGGKSYYGALLCCAWSMD------GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPN 399 (548)
Q Consensus 326 wd~~~~~~~~~~~~~~~~v~~l~~spd------g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 399 (548)
||++ ++++..+.+|...|.+++|+|. +..|++++.|+.|++||+++.+....+.+|...|.+++|+|
T Consensus 134 wd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp------ 206 (319)
T 3frx_A 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP------ 206 (319)
T ss_dssp EETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT------
T ss_pred EECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC------
Confidence 9997 5667788899999999999995 44899999999999999999999999999999999999999
Q ss_pred CCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceE
Q 008939 400 SDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV 479 (548)
Q Consensus 400 ~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~ 479 (548)
+| .+|++++.|+.|++||+.+++++..+..
T Consensus 207 -~g------~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------------------- 236 (319)
T 3frx_A 207 -DG------TLIASAGKDGEIMLWNLAAKKAMYTLSA------------------------------------------- 236 (319)
T ss_dssp -TS------SEEEEEETTCEEEEEETTTTEEEEEEEC-------------------------------------------
T ss_pred -CC------CEEEEEeCCCeEEEEECCCCcEEEEecC-------------------------------------------
Confidence 99 7999999999999999999887655432
Q ss_pred EeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCccc----------cCCCCcEE--EecCCCCceEeeeccccc
Q 008939 480 AHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAESQ----------SSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 480 ~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~~~----------~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
...|.+++|+|++ ++.++.+..|++|++....... ..+...+. +|+||+++|+++...|.+
T Consensus 237 -----~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i 310 (319)
T 3frx_A 237 -----QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310 (319)
T ss_dssp -----CSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred -----CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceE
Confidence 3579999999985 4444556679999987643111 12233444 899999999999887654
No 36
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-37 Score=341.97 Aligned_cols=383 Identities=12% Similarity=0.101 Sum_probs=266.6
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
.|...|..++|+| |++|++++.| +|+|||++++. .+..+. +...+++++|+|+ +.+|++|+.||.|++||++
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~--~~~~~~-~~~~V~~v~~sp~---g~~l~sgs~dg~V~lwd~~ 128 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK--VLTTVF-VPGKITSIDTDAS---LDWMLIGLQNGSMIVYDID 128 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS--EEEEEE-CSSCEEEEECCTT---CSEEEEEETTSCEEEEETT
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc--EEEEEc-CCCCEEEEEECCC---CCEEEEEcCCCcEEEEECC
Confidence 4678899999999 8888888877 99999999854 777776 5678999999999 8899999999999999997
Q ss_pred ecccccccceeeeeee---c---cCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 207 QQLQDVGKKLVGAHHY---N---KDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~---~---~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
... +.. ... . .....|...|++++|+|++..+|++|+.||.| +||++.. .....+......
T Consensus 129 ~~~------~~~-~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~-~~~~~~~~~~~~---- 195 (902)
T 2oaj_A 129 RDQ------LSS-FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN-EIKQSFIYELPP---- 195 (902)
T ss_dssp TTE------EEE-EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT-EEEEEECCCBCT----
T ss_pred CCc------ccc-ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC-ceEEEEecccCC----
Confidence 621 110 000 0 12235889999999999765589999999999 9999863 111111100000
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe--e---ee-------------cCC
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG--G---KS-------------YYG 342 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~--~---~~-------------~~~ 342 (548)
...........+..|...|.+++|+|+|++|++++.|+.|++||+++++++.. + .. |..
T Consensus 196 ---g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~ 272 (902)
T 2oaj_A 196 ---FAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAA 272 (902)
T ss_dssp ---TCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCC
T ss_pred ---cCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccC
Confidence 00000000022345668899999999999999999999999999999887653 2 11 345
Q ss_pred ceEEEEEc----cCC-CEEEEEeCC-------------------------------------------------------
Q 008939 343 ALLCCAWS----MDG-KYILTGGED------------------------------------------------------- 362 (548)
Q Consensus 343 ~v~~l~~s----pdg-~~l~sgs~d------------------------------------------------------- 362 (548)
.|.+++|+ |++ .+|++|+.|
T Consensus 273 ~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 352 (902)
T 2oaj_A 273 KISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIP 352 (902)
T ss_dssp EEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECC
T ss_pred CeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECC
Confidence 78999995 433 355555443
Q ss_pred ---------------------CeEEEEECCCceeEEe-------ccCCCCCeEEEEEecC----C---------------
Q 008939 363 ---------------------DLVQVWSMEDRKVVAW-------GEGHNSWVSGVAFDSY----W--------------- 395 (548)
Q Consensus 363 ---------------------g~I~vwd~~~~~~~~~-------~~~h~~~V~~v~~~p~----~--------------- 395 (548)
+.|++||+.++..... +..|...|++++|++. |
T Consensus 353 ~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~ 432 (902)
T 2oaj_A 353 RQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLK 432 (902)
T ss_dssp SSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCC
T ss_pred CCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCccc
Confidence 3344444433322111 2233455555555320 0
Q ss_pred -----C---CCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEe--ee----------ecCCCCCCceecCCCCccccC
Q 008939 396 -----S---QPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV--PL----------RRGPLGGSPTFSTGSQSAHWD 455 (548)
Q Consensus 396 -----~---~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~~d 455 (548)
. .-.+|| .+|++++.|++|++||+.+++... .+ .+...+.+++|++++
T Consensus 433 G~~~~v~sv~~spdg------~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg------ 500 (902)
T 2oaj_A 433 GGVRTKRQKLPAEYG------TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET------ 500 (902)
T ss_dssp CSBCCCCCCCCCSEE------EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT------
T ss_pred CCcCCCCcccccccC------cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCC------
Confidence 0 000155 799999999999999998875321 11 122456788899887
Q ss_pred CeeeecccCCCCceeecCCC---------------------------------------------CceEEeecCCCCeeE
Q 008939 456 NVCPVGTLQPAPSMRDVPKL---------------------------------------------SPLVAHRVHTEPLSG 490 (548)
Q Consensus 456 ~~~~~g~~~~~~~~~d~~~~---------------------------------------------~~~~~~~~h~~~V~~ 490 (548)
..++++..++.+++|++... +++..+.+|.+.|++
T Consensus 501 ~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~s 580 (902)
T 2oaj_A 501 LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSA 580 (902)
T ss_dssp TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEE
T ss_pred CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEE
Confidence 56778888888899987654 246778899999999
Q ss_pred EEEeCCe-EEEEECCCeEEEEeCCCCCcc-------c-cCCCCcEE--Eec-----CCC---CceEeeeccccc
Q 008939 491 LIFTQES-VLTVCREGHIKIWMRPGVAES-------Q-SSSSETVL--STS-----SKD---KPLLSSKVVTSS 545 (548)
Q Consensus 491 l~fspd~-l~t~s~Dg~I~iW~~~~~~~~-------~-~~~~~~v~--~~s-----~d~---~~l~s~~~~g~~ 545 (548)
|+|+||+ |++|+.|++|+|||+.+.... . ..|...|. +|+ ||| ++|+++...|.+
T Consensus 581 vafSpdG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv 654 (902)
T 2oaj_A 581 INNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEV 654 (902)
T ss_dssp EEECBTSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEE
T ss_pred EEecCCcEEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcE
Confidence 9999996 889999999999999876431 1 16777776 888 885 899999887654
No 37
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.2e-36 Score=306.36 Aligned_cols=320 Identities=14% Similarity=0.109 Sum_probs=246.8
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
.|..+|.+++|+|+++++++++.+ .|+|||+.++..+.+..+..|...+.+++|+|+ +.+|++++.||.|++||++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD---SNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT---TTEEEEEETTSCEEEEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC---CCEEEEEcCCCeEEEEECC
Confidence 478899999999999999998776 999999987433377888889999999999998 8899999999999999997
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
.. ....... ...|...|++++|+|++. +|++++.|+.|++||++......
T Consensus 83 ~~------~~~~~~~----~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~------------------- 132 (372)
T 1k8k_C 83 GR------TWKPTLV----ILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWW------------------- 132 (372)
T ss_dssp TT------EEEEEEE----CCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEE-------------------
T ss_pred CC------eeeeeEE----eecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcce-------------------
Confidence 62 1111110 112688999999999998 99999999999999998632100
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeC------------------CCCeEEEeeeecCCceEEEE
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDY------------------SKEQLICGGKSYYGALLCCA 348 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~------------------~~~~~~~~~~~~~~~v~~l~ 348 (548)
........|...|.+++|+|++++|++++.|+.|++||+ ..++.+..+..|...|.+++
T Consensus 133 ---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 209 (372)
T 1k8k_C 133 ---VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209 (372)
T ss_dssp ---EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE
T ss_pred ---eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEE
Confidence 001122446789999999999999999999999999995 46788888889999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC-
Q 008939 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM- 427 (548)
Q Consensus 349 ~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~- 427 (548)
|+|++++|++++.|+.|++||+++++++..+..|...|.+++|+| ++ .+|+++ .|+.|++||+..
T Consensus 210 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-------~~------~~l~~~-~d~~i~i~~~~~~ 275 (372)
T 1k8k_C 210 FSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-------ES------SLVAAG-HDCFPVLFTYDSA 275 (372)
T ss_dssp ECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-------TT------EEEEEE-TTSSCEEEEEETT
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEec-------CC------CEEEEE-eCCeEEEEEccCc
Confidence 999999999999999999999999999999999999999999999 88 666665 999999999988
Q ss_pred -CeEE--eeeecCCCCCCceecCCCCccccCCeeeecccCCCCcee---ecCCCCc------eEEeecCCCCeeEEEEe-
Q 008939 428 -DEIV--VPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMR---DVPKLSP------LVAHRVHTEPLSGLIFT- 494 (548)
Q Consensus 428 -~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~---d~~~~~~------~~~~~~h~~~V~~l~fs- 494 (548)
++.. ..+... .... . .....+.+| +...... .....+|..+|++++|.
T Consensus 276 ~~~~~~~~~~~~~--~~~~----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 336 (372)
T 1k8k_C 276 AGKLSFGGRLDVP--KQSS----Q-------------RGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS 336 (372)
T ss_dssp TTEEEECCCCCCC---------------------------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEE
T ss_pred CceEEEeeccCcc--ccch----h-------------hhcchhhhhhhcccccccccCccccccccccccCCcceeEEec
Confidence 6422 211110 0000 0 000112222 2111111 12224899999999966
Q ss_pred CC-----eEEEEECCCeEEEEeCCCCC
Q 008939 495 QE-----SVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 495 pd-----~l~t~s~Dg~I~iW~~~~~~ 516 (548)
++ .|+|++.||.|++|++...+
T Consensus 337 ~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 337 GGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp STTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred CCCcceeeEEEecCCCceEEEEecChh
Confidence 54 59999999999999986543
No 38
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-36 Score=299.25 Aligned_cols=297 Identities=17% Similarity=0.218 Sum_probs=224.2
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+.+..+..|...|.+++|+|+ +|++|+.|+.|++||+.... ....... . ...|...|++++|+|++.
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~-----~las~~~D~~i~lw~~~~~~----~~~~~~~--~--~~~h~~~v~~v~~sp~~~ 71 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG-----ILATGSTDRKIKLVSVKYDD----FTLIDVL--D--ETAHKKAIRSVAWRPHTS 71 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT-----EEEEEESSSCEEEEECSSSC----CEEEEEE--C--TTCCCSCEEEEEECTTSS
T ss_pred ccceeeccCCCceeeeccCCC-----EEEEEcCCCEEEEEEecCCC----eEEEEEE--e--cCCccCCEEEEEECCCCC
Confidence 356778889999999999986 89999999999999987521 0111111 0 112788999999999998
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
+|++++.|+.|+|||+....... ....++..+.+|...|.+++|+|++++|++++.|+.|
T Consensus 72 -~las~s~D~~v~iw~~~~~~~~~-------------------~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v 131 (330)
T 2hes_X 72 -LLAAGSFDSTVSIWAKEESADRT-------------------FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131 (330)
T ss_dssp -EEEEEETTSCEEEEEC--------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCE
T ss_pred -EEEEEeCCCcEEEEEcccCcCcc-------------------ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEE
Confidence 99999999999999986421000 0123466778899999999999999999999999999
Q ss_pred EEEeCCC----CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc--eeEEeccCCCCCeEEEEEecCCCC
Q 008939 324 RVFDYSK----EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR--KVVAWGEGHNSWVSGVAFDSYWSQ 397 (548)
Q Consensus 324 ~vwd~~~----~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~--~~~~~~~~h~~~V~~v~~~p~~~~ 397 (548)
++||++. .+++..+.+|...|.+++|+|++++|++|+.|+.|++||+.++ +++..+.+|...|.+++|+|
T Consensus 132 ~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~---- 207 (330)
T 2hes_X 132 WIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK---- 207 (330)
T ss_dssp EEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC----
T ss_pred EEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC----
Confidence 9999943 2567778899999999999999999999999999999999776 67889999999999999999
Q ss_pred CCCC--CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCC
Q 008939 398 PNSD--GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL 475 (548)
Q Consensus 398 ~~~d--g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~ 475 (548)
+ + .+|++++.|+.|++||++.+..... . ..
T Consensus 208 ---~~~~------~~l~s~s~D~~v~iw~~~~~~~~~~----------------------------------~-----~~ 239 (330)
T 2hes_X 208 ---TEGV------FRLCSGSDDSTVRVWKYMGDDEDDQ----------------------------------Q-----EW 239 (330)
T ss_dssp ---SSSS------CEEEEEETTSCEEEEEEEEECTTSC----------------------------------E-----EE
T ss_pred ---CCCe------eEEEEEeCCCeEEEEEecCCCcccc----------------------------------c-----ee
Confidence 6 4 5899999999999999865321000 0 00
Q ss_pred CceEEeec-CCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCc-----cccCCCC-cEE--EecC--CCCceEeeeccc
Q 008939 476 SPLVAHRV-HTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAE-----SQSSSSE-TVL--STSS--KDKPLLSSKVVT 543 (548)
Q Consensus 476 ~~~~~~~~-h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~-----~~~~~~~-~v~--~~s~--d~~~l~s~~~~g 543 (548)
.....+.. |...|++++|+++. |++++.||.|+||++..+.. ....|.. .+. +++| ++++|+++...|
T Consensus 240 ~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 240 VCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 11122333 88999999999874 99999999999999876531 1134554 554 7788 788999998876
Q ss_pred cc
Q 008939 544 SS 545 (548)
Q Consensus 544 ~~ 545 (548)
.+
T Consensus 320 ~v 321 (330)
T 2hes_X 320 IV 321 (330)
T ss_dssp EE
T ss_pred cE
Confidence 54
No 39
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-37 Score=326.65 Aligned_cols=326 Identities=11% Similarity=0.036 Sum_probs=226.5
Q ss_pred CCCCCEEEEecCC-eEEEEEccCCCCCC--eEEEecCCCCceEEEecCCC---CCCceEEEEEcCCcEEEEEeeeccccc
Q 008939 139 DGKGTYIIFNVGD-AIFISDLNSQDKDP--IKSIHFSNSNPVCHAFDQDA---KDGHDLLIGLNSGDVYSVSLRQQLQDV 212 (548)
Q Consensus 139 ~~~g~~l~~~~~d-~v~vwd~~~~~~~~--i~~~~~~~~~~~~~~~~p~~---~~~~~l~~g~~dg~I~iwdl~~~~~~~ 212 (548)
+|++..+++++.| +|+|||+..+.... ...+..+...+.+++|+|+. .++.+|++++.||.|++||+.......
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 4555666666677 99999998754211 23355567789999999972 135799999999999999997531110
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCe
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 292 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (548)
.. .............|...|++++|+|++ .|++|+.||+|++||++.. ..+.
T Consensus 250 ~~-~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~-------------------------~~~~ 301 (524)
T 2j04_B 250 HV-FKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDP-------------------------EVPS 301 (524)
T ss_dssp SE-EECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBC-------------------------SSCS
T ss_pred cc-ceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCC-------------------------CCce
Confidence 00 000000000112478999999999864 7999999999999999852 1345
Q ss_pred eEeeecCCCeEEE--EECCCC-CEEEEEECCCeEEEEeCCCCeEEEeeeecCC--ceEEEEEccCCCEEEEEeCCCeEEE
Q 008939 293 ARWHICQGSINSI--AFSTDG-TYLATVGRDGYLRVFDYSKEQLICGGKSYYG--ALLCCAWSMDGKYILTGGEDDLVQV 367 (548)
Q Consensus 293 ~~~~~h~~~v~~~--~~sp~g-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~sgs~dg~I~v 367 (548)
..+..|...|.++ +|+|++ ++|++++.|++|+|||+++++++..+.+|.. .|.+++|+|+++.|++++.|+.|++
T Consensus 302 ~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~l 381 (524)
T 2j04_B 302 FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRA 381 (524)
T ss_dssp EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEE
T ss_pred EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEE
Confidence 5678899999999 578887 8999999999999999998887766766653 5889999999999999999999999
Q ss_pred EECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC------CCC
Q 008939 368 WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP------LGG 441 (548)
Q Consensus 368 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~------~~~ 441 (548)
||++++.++..+.+|...|++|+|+| +| .+|++++.|++|++||+... ++....... .+.
T Consensus 382 wd~~~~~~~~~l~gH~~~V~sva~Sp-------~g------~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~ 447 (524)
T 2j04_B 382 VPSRAAFAVHPLVSRETTITAIGVSR-------LH------PMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLW 447 (524)
T ss_dssp EETTCTTCCEEEEECSSCEEEEECCS-------SC------CBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEE
T ss_pred EECcccccceeeecCCCceEEEEeCC-------CC------CeEEEEECCCEEEEEechHh-hccccccCccceeeeEEE
Confidence 99999988888889999999999999 98 78999999999999998654 222211100 122
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecC-CCCceEEeecCCCCeeEEEEeCC-----eEEEEECCCeEEEEeCCCC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVP-KLSPLVAHRVHTEPLSGLIFTQE-----SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~-~~~~~~~~~~h~~~V~~l~fspd-----~l~t~s~Dg~I~iW~~~~~ 515 (548)
.+.|++++. .+.. .....+|+.. +...+..+.+|...|.+|+|+|+ .|++|+.||+||||++...
T Consensus 448 ~v~~sp~g~------~~~~---~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 448 KWDYSIKDD------KYRI---DSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp ECBCCSSSC------EEEE---CCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred EeccCCCCC------eEEc---cCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 455666553 1111 1122233222 34567788899999999999998 4899999999999998764
No 40
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.9e-36 Score=303.58 Aligned_cols=320 Identities=16% Similarity=0.190 Sum_probs=249.6
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCC----CCCeEEEecCCCCceEEEecCC-CCCC---ceEEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQD----KDPIKSIHFSNSNPVCHAFDQD-AKDG---HDLLIGL 195 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~----~~~i~~~~~~~~~~~~~~~~p~-~~~~---~~l~~g~ 195 (548)
.+.+|...|.+++|+| .++++++.| .|+|||+.... ...+..+..+...+.+++|+|+ ..++ .+|++++
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 4568999999999999 788888877 99999999744 2368888889999999999986 1124 6899999
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCccc-----CcceEEEEEe----cCCCcE-EEEEeCCCcEEEEEcCC---
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVN-----NSRCTSVTWV----PGGDGA-FVVGHADGNLYVYEKSK--- 262 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~l~~~----p~~~~~-l~s~~~dg~v~vwd~~~--- 262 (548)
.||.|++||+...... .+....... .| ...|.+++|+ |++. + |++++.||.|++||++.
T Consensus 89 ~dg~i~iw~~~~~~~~-~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 89 FSGDLLFYRITREDET-KKVIFEKLD------LLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp TTSCEEEEEEEECTTT-CCEEEEEEC------CSCTTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEESSSS
T ss_pred CCCCEEEEEccCCccc-ccccceeec------ccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCcccc
Confidence 9999999999873210 000011111 24 5899999999 9998 7 99999999999999986
Q ss_pred ---CCCCCCCcccccccceeeeecCCCCCCCCeeEe-------eecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 263 ---DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARW-------HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 263 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
..... ..+...+ ..|...|.+++|+|++ +|++++.|+.|++||+++++
T Consensus 161 ~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 218 (397)
T 1sq9_A 161 ESNSLTLN---------------------WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR 218 (397)
T ss_dssp HHHHTTTC---------------------CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE
T ss_pred ccccceee---------------------ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc
Confidence 21111 1112234 3477899999999999 99999999999999999999
Q ss_pred EEEeeee---c---CCceEEEEEccCCCEEEEEeCC---CeEEEEECCCceeEEeccC-------------CCCCeEEEE
Q 008939 333 LICGGKS---Y---YGALLCCAWSMDGKYILTGGED---DLVQVWSMEDRKVVAWGEG-------------HNSWVSGVA 390 (548)
Q Consensus 333 ~~~~~~~---~---~~~v~~l~~spdg~~l~sgs~d---g~I~vwd~~~~~~~~~~~~-------------h~~~V~~v~ 390 (548)
.+..+.. | ...|.+++|+|++++|++++.| +.|++||+++++++..+.+ |...|.+++
T Consensus 219 ~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 298 (397)
T 1sq9_A 219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 298 (397)
T ss_dssp EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE
Confidence 9999988 8 9999999999999999999999 9999999999999999998 999999999
Q ss_pred EecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCcee
Q 008939 391 FDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMR 470 (548)
Q Consensus 391 ~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~ 470 (548)
|+| ++ .+|++++.|+.|++||+++++++..+....... .+ ..
T Consensus 299 ~~~-------~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~---------------~~ 340 (397)
T 1sq9_A 299 FND-------SG------ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI----------EI---------------EE 340 (397)
T ss_dssp ECS-------SS------SEEEEEETTSEEEEEETTTTEEEEEEECCGGGC----------SS---------------GG
T ss_pred ECC-------CC------CEEEEEeCCCeEEEEEcCCCceeEEEecccCcc----------cc---------------hh
Confidence 999 88 799999999999999999999888776210000 00 00
Q ss_pred ecCCCCceEEeecCCCCeeEEEEeCC------------eEEEEECCCeEEEEeCCCC
Q 008939 471 DVPKLSPLVAHRVHTEPLSGLIFTQE------------SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 471 d~~~~~~~~~~~~h~~~V~~l~fspd------------~l~t~s~Dg~I~iW~~~~~ 515 (548)
|..... ......|...|++++|+|+ .|++++.||.|++|++.++
T Consensus 341 ~~~~g~-~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 341 DILAVD-EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp GCCCBC-TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred hhhccc-cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 000000 0112346899999999998 4999999999999998764
No 41
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-35 Score=319.90 Aligned_cols=363 Identities=15% Similarity=0.128 Sum_probs=289.2
Q ss_pred ccCCCCCC-ceeEEeCC--CCCEEEEecCC-eEEEEEccCC------CCCCeEEEecCCCCceEEEecCCCCCCceEEEE
Q 008939 125 GASSSSTS-MTNTNFDG--KGTYIIFNVGD-AIFISDLNSQ------DKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIG 194 (548)
Q Consensus 125 ~~~~h~~~-v~~~~~~~--~g~~l~~~~~d-~v~vwd~~~~------~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g 194 (548)
.+.+|... |.+++|+| +++++++++.| .|+|||+.++ ....+..+..+...+.+++|+|+ +.+|+++
T Consensus 58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~ 134 (615)
T 1pgu_A 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE---GRRLCVV 134 (615)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT---SSEEEEE
T ss_pred EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCC---CCEEEEe
Confidence 45678999 99999999 99999998888 9999999754 23467777778899999999999 8889999
Q ss_pred EcC----CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 008939 195 LNS----GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSF 270 (548)
Q Consensus 195 ~~d----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 270 (548)
+.+ +.|++||... .+.. ...|...|++++|+|+++.+|++++.|+.|++||+..
T Consensus 135 ~~~~~~~~~v~~~d~~~-------~~~~-------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~-------- 192 (615)
T 1pgu_A 135 GEGRDNFGVFISWDSGN-------SLGE-------VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-------- 192 (615)
T ss_dssp ECCSSCSEEEEETTTCC-------EEEE-------CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT--------
T ss_pred ccCCCCccEEEEEECCC-------ccee-------eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC--------
Confidence 988 7899998432 1111 1137899999999999976899999999999999875
Q ss_pred ccccccceeeeecCCCCCCCCeeEeeecCC---CeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEee-e---ecCC
Q 008939 271 PVIKDQTQFSVAHPRYSKSNPIARWHICQG---SINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGG-K---SYYG 342 (548)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~-~---~~~~ 342 (548)
...+..+..|.. .|.+++|+|+ +++|++++.|+.|++||+++++.+..+ . .|..
T Consensus 193 ------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 254 (615)
T 1pgu_A 193 ------------------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 254 (615)
T ss_dssp ------------------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred ------------------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC
Confidence 234566777888 9999999999 999999999999999999999999888 6 8999
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC----CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 343 ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH----NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 343 ~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h----~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
.|.+++|+ ++++|++++.|+.|++||+++++.+..+..+ ...+.++.|. ++ .++++++.|+
T Consensus 255 ~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~------~~l~~~~~~g 319 (615)
T 1pgu_A 255 GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT--------GN------GRIISLSLDG 319 (615)
T ss_dssp CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE--------ET------TEEEEEETTS
T ss_pred ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC--------CC------CeEEEEECCC
Confidence 99999999 9999999999999999999999998888866 4678888884 44 4899999999
Q ss_pred eEEEEECCCCeEEeeeecCC-CCCCce---------------------------------ec---------CCCCcccc-
Q 008939 419 RLLLWDLEMDEIVVPLRRGP-LGGSPT---------------------------------FS---------TGSQSAHW- 454 (548)
Q Consensus 419 ~i~lwd~~~~~~~~~~~~~~-~~~~~~---------------------------------~~---------~~~~~~~~- 454 (548)
.|++||+.+++.+..+..+. .+..+. +. .++....|
T Consensus 320 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 320 TLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp CEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETT
T ss_pred CEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEE
Confidence 99999999887776664321 111111 11 11111111
Q ss_pred --------------------------------------------------------CCeeeeccc-CCCCceeecCCCCc
Q 008939 455 --------------------------------------------------------DNVCPVGTL-QPAPSMRDVPKLSP 477 (548)
Q Consensus 455 --------------------------------------------------------d~~~~~g~~-~~~~~~~d~~~~~~ 477 (548)
...+..+.. ++.+++||+.....
T Consensus 400 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~ 479 (615)
T 1pgu_A 400 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV 479 (615)
T ss_dssp EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred cccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccc
Confidence 122344444 77888888877655
Q ss_pred e-EEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCccc--cC-CCCcEE--EecC----------CCCceEee
Q 008939 478 L-VAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQ--SS-SSETVL--STSS----------KDKPLLSS 539 (548)
Q Consensus 478 ~-~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~--~~-~~~~v~--~~s~----------d~~~l~s~ 539 (548)
. ..+..|...|++++|+|+ .|++++.||.|++||+...+... .. |...+. +++| ++++|+++
T Consensus 480 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~ 559 (615)
T 1pgu_A 480 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 559 (615)
T ss_dssp EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE
T ss_pred cccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEE
Confidence 4 667789999999999997 49999999999999998766322 23 677776 7889 99999999
Q ss_pred eccccc
Q 008939 540 KVVTSS 545 (548)
Q Consensus 540 ~~~g~~ 545 (548)
...|.+
T Consensus 560 ~~dg~i 565 (615)
T 1pgu_A 560 SLDTNI 565 (615)
T ss_dssp ETTSCE
T ss_pred cCCCcE
Confidence 877654
No 42
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-37 Score=310.24 Aligned_cols=332 Identities=13% Similarity=0.100 Sum_probs=229.8
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
+.++|.+++|+|+|++|++++.| .|+|||+.++..+.+..+..|...+.+++|+|+ +.+|++++.||.|++||++.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK---SNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT---TCCEEEEETTSSEEEC----
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC---CCEEEEEeCCCeEEEEEcCC
Confidence 46688999999999999998777 999999997522467777788999999999998 78999999999999999987
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
.. ..+.... ...|...|++++|+|++. +|++++.|+.|++||++....
T Consensus 87 ~~--~~~~~~~-------~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~---------------------- 134 (377)
T 3dwl_C 87 DG--TWKQTLV-------LLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQEND---------------------- 134 (377)
T ss_dssp ----CCCCEEE-------CCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC---------------------------
T ss_pred CC--ceeeeeE-------ecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCccc----------------------
Confidence 21 0011111 113789999999999998 899999999999999986321
Q ss_pred CCCCeeEeee-cCCCeEEEEECCCCCEEEEEECCCeEEEEeCC------------------CCeEEEeeeecCCceEEEE
Q 008939 288 KSNPIARWHI-CQGSINSIAFSTDGTYLATVGRDGYLRVFDYS------------------KEQLICGGKSYYGALLCCA 348 (548)
Q Consensus 288 ~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~------------------~~~~~~~~~~~~~~v~~l~ 348 (548)
...+..+.. |...|.+++|+|++++|++++.|+.|++||++ .++++..+ .|...|.+++
T Consensus 135 -~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 212 (377)
T 3dwl_C 135 -WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG 212 (377)
T ss_dssp -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred -ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence 113445555 88999999999999999999999999999985 35566666 8999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCcee----EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 008939 349 WSMDGKYILTGGEDDLVQVWSMEDRKV----VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424 (548)
Q Consensus 349 ~spdg~~l~sgs~dg~I~vwd~~~~~~----~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd 424 (548)
|+|++++|++++.|+.|++||+++++. +..+.+|...|.+++|+| +| .+|++++.|+.+ +|+
T Consensus 213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~~------~~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN-------ES------AIVAAGYNYSPI-LLQ 278 (377)
T ss_dssp ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEE-------TT------EEEEEESSSSEE-EEC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcC-------CC------CEEEEEcCCcEE-EEE
Confidence 999999999999999999999999877 788889999999999999 98 788888766655 776
Q ss_pred CCCCeE--EeeeecCCCCCCceecCCCCccccCCeeee--cccCCCCceeecC--CCCceEEeecCCCCeeEEEEeCC--
Q 008939 425 LEMDEI--VVPLRRGPLGGSPTFSTGSQSAHWDNVCPV--GTLQPAPSMRDVP--KLSPLVAHRVHTEPLSGLIFTQE-- 496 (548)
Q Consensus 425 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--g~~~~~~~~~d~~--~~~~~~~~~~h~~~V~~l~fspd-- 496 (548)
...... ...+................... ...... ..........+.. ..........|...|++|++.++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~ 357 (377)
T 3dwl_C 279 GNESGWAHTRDLDAGTSKTSFTHTGNTGEGR-EEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP 357 (377)
T ss_dssp CCC---CCSBCCCSCCCCCCBSSSSSBCCCC-CC-------------------------CCCSSSCSSCEEEEEEEEEET
T ss_pred eCCCceEEEeeeccccccccccccccccccc-ccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC
Confidence 654321 11111111100000000000000 000000 0000000000000 00112223469999999997764
Q ss_pred ----eEEEEECCCeEEEEeC
Q 008939 497 ----SVLTVCREGHIKIWMR 512 (548)
Q Consensus 497 ----~l~t~s~Dg~I~iW~~ 512 (548)
.|+|++.||.|+|||+
T Consensus 358 ~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 358 GNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp TEEEEEEEEETTSEEEEECC
T ss_pred CceEEEEeecCCCcEEEecC
Confidence 3999999999999985
No 43
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-35 Score=330.90 Aligned_cols=362 Identities=15% Similarity=0.137 Sum_probs=281.1
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
+.+|.+.|.+++|+|+|.++++++.+ .|+|||+.++. .+..+..+...+.+++|+|+ +.+|++++.||.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV--EVRSIQVTETPVRAGKFIAR---KNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEEEGG---GTEEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc--eEEEEecCCCcEEEEEEeCC---CCEEEEEeCCCeEEEEE
Confidence 45789999999999999999998877 99999999854 88888889999999999998 88999999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+.+ ++.+.... .|...|++++|+|+++ +|++++.||.|++||++..
T Consensus 84 ~~~-----~~~~~~~~-------~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~--------------------- 129 (814)
T 3mkq_A 84 YNT-----GEKVVDFE-------AHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENN--------------------- 129 (814)
T ss_dssp TTT-----CCEEEEEE-------CCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGT---------------------
T ss_pred CCC-----CcEEEEEe-------cCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCC---------------------
Confidence 876 22222211 3789999999999999 8999999999999999752
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecC-CceEEEEEcc--CCCEEEEEe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-GALLCCAWSM--DGKYILTGG 360 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~~sp--dg~~l~sgs 360 (548)
......+..|...|.+++|+| ++++|++++.||.|++||+.+++....+..+. ..+.+++|+| ++++|++++
T Consensus 130 ----~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 205 (814)
T 3mkq_A 130 ----WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (814)
T ss_dssp ----SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred ----ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence 134566778889999999999 88999999999999999999887776666554 8899999999 999999999
Q ss_pred CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CC
Q 008939 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PL 439 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~ 439 (548)
.|+.|++||+++++.+..+.+|...|.+++|+| ++ .+|++++.|+.|++||+.+++.+..+..+ ..
T Consensus 206 ~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-------~~------~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~ 272 (814)
T 3mkq_A 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-------TL------PIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272 (814)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-------SS------SEEEEEETTSCEEEEETTTCSEEEEECCSSSS
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-------CC------CEEEEEeCCCeEEEEECCCCcEEEEeecCCCc
Confidence 999999999999999999999999999999999 88 69999999999999999999988877654 34
Q ss_pred CCCceecCCCCc----cccCCeeeecccC---------------------CC---------CceeecCCCC----ceEEe
Q 008939 440 GGSPTFSTGSQS----AHWDNVCPVGTLQ---------------------PA---------PSMRDVPKLS----PLVAH 481 (548)
Q Consensus 440 ~~~~~~~~~~~~----~~~d~~~~~g~~~---------------------~~---------~~~~d~~~~~----~~~~~ 481 (548)
+..+.+++++.. ...+..+...... .. ...|++.... ....+
T Consensus 273 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (814)
T 3mkq_A 273 SWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKEL 352 (814)
T ss_dssp EEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEE
T ss_pred EEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecC
Confidence 445555665521 1111111111100 00 0011111111 12333
Q ss_pred ecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCccccCCCCcEEEecCCCCceEeeeccccc
Q 008939 482 RVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQSSSSETVLSTSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 482 ~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~~~~~~~v~~~s~d~~~l~s~~~~g~~ 545 (548)
..|...+.+++|+|++ |++++ |+.+.+|++........ ..-.-++++||+++|+++...|.+
T Consensus 353 ~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~~-~~i~~~~~spdg~~la~~~~~g~v 416 (814)
T 3mkq_A 353 GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKAF-GKCQDFVWGPDSNSYALIDETGQI 416 (814)
T ss_dssp CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEE-EECSEEEECTTSSCEEEECTTCCE
T ss_pred CCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccCC-CceEEEEEeCCCCeEEEEeCCCcE
Confidence 4566778999999985 66666 99999999764322111 112234788999999998776543
No 44
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-36 Score=308.26 Aligned_cols=338 Identities=13% Similarity=0.144 Sum_probs=263.7
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCc-eEEEEEcCCcEEEEEe----eecccccccceeeeeeeccC-
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGH-DLLIGLNSGDVYSVSL----RQQLQDVGKKLVGAHHYNKD- 225 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~-~l~~g~~dg~I~iwdl----~~~~~~~~~~~~~~~~~~~~- 225 (548)
.+.+|+++... .+.....+...+.+++|+|+ +. +|++|+.||.|++||+ ..... ...+.....+...
T Consensus 26 ~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~ 98 (425)
T 1r5m_A 26 IDSSDDLDGFV--KILKEIVKLDNIVSSTWNPL---DESILAYGEKNSVARLARIVETDQEGKK--YWKLTIIAELRHPF 98 (425)
T ss_dssp --------CCC--EECEEEEECSCCSEEEECSS---CTTEEEEEETBTEEEEEEEEEC--------CEEEEEEEEEECCC
T ss_pred ccccccchhhh--hheeeeeccCceEEEEECCC---CCcEEEEecCCceEEEEEEecccCCccc--cccccccccccccc
Confidence 45688887532 44444556789999999999 77 9999999999999999 54110 0000000011111
Q ss_pred -----CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 226 -----GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 226 -----~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
...|...|++++|+|++. +|++++.||.|++||.. ...+..+..|..
T Consensus 99 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~~~~---------------------------~~~~~~~~~~~~ 150 (425)
T 1r5m_A 99 ALSASSGKTTNQVTCLAWSHDGN-SIVTGVENGELRLWNKT---------------------------GALLNVLNFHRA 150 (425)
T ss_dssp CCC------CBCEEEEEECTTSS-EEEEEETTSCEEEEETT---------------------------SCEEEEECCCCS
T ss_pred cccccccCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEeCC---------------------------CCeeeeccCCCc
Confidence 112577999999999998 99999999999999933 244667778889
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCc---------------eEEEEEccCCCEEEEEeCCCeE
Q 008939 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA---------------LLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~---------------v~~l~~spdg~~l~sgs~dg~I 365 (548)
.|.+++|+|++++|++++.|+.|++||+.+++.+..+..+... +.+++|+|++ .+++++.|+.|
T Consensus 151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i 229 (425)
T 1r5m_A 151 PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAI 229 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCE
T ss_pred cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeE
Confidence 9999999999999999999999999999999998888877766 9999999986 58899999999
Q ss_pred EEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec-CCCCCCce
Q 008939 366 QVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR-GPLGGSPT 444 (548)
Q Consensus 366 ~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~ 444 (548)
++||+++++.+..+..|...|.+++|+| ++ .+|++++.|+.|++||+++++.+..+.. ...+..+.
T Consensus 230 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~-------~~------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 296 (425)
T 1r5m_A 230 FVYQITEKTPTGKLIGHHGPISVLEFND-------TN------KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS 296 (425)
T ss_dssp EEEETTCSSCSEEECCCSSCEEEEEEET-------TT------TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEE
T ss_pred EEEEcCCCceeeeeccCCCceEEEEECC-------CC------CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEE
Confidence 9999999999999999999999999999 88 6899999999999999999888877753 34556666
Q ss_pred ecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCC------
Q 008939 445 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA------ 516 (548)
Q Consensus 445 ~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~------ 516 (548)
+++++ .+..+..++.+++||+...+++..+..|...|.+++|+|+ .|++++.||.|++|++....
T Consensus 297 ~~~~~-------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 369 (425)
T 1r5m_A 297 WVGDD-------KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSL 369 (425)
T ss_dssp EETTT-------EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----
T ss_pred ECCCC-------EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeee
Confidence 76653 6678888999999999999999999999999999999997 49999999999999987644
Q ss_pred ----------------ccccCCCC--cEE--EecCCCCceEeeeccccc
Q 008939 517 ----------------ESQSSSSE--TVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 517 ----------------~~~~~~~~--~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
.....+.. .+. +++|++++|+++...|.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 370 YGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp ---------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred ecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE
Confidence 11224433 565 788999999999887755
No 45
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7e-36 Score=298.94 Aligned_cols=311 Identities=13% Similarity=0.123 Sum_probs=239.0
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEec-C---C-eEEEEEccCCCCCCeEEE-ecCCCCceEEEecCCCCCCceEEEEEcC
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNV-G---D-AIFISDLNSQDKDPIKSI-HFSNSNPVCHAFDQDAKDGHDLLIGLNS 197 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~-~---d-~v~vwd~~~~~~~~i~~~-~~~~~~~~~~~~~p~~~~~~~l~~g~~d 197 (548)
....+|...|.+++|+|++..+++.+ . | .|+|||+.++. ..... ..+...+.+++|+|+..++.+|++|+.|
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD--LKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS--EEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc--ccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 34456999999999999997666544 3 5 99999999754 33222 2477899999999985446899999999
Q ss_pred CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEE------ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcc
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTW------VPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFP 271 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~------~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 271 (548)
|.|++||++.. +...... ..|...|++++| +|++. +|++++.||.|++||++....
T Consensus 90 g~i~iwd~~~~-----~~~~~~~------~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~------ 151 (357)
T 3i2n_A 90 GNLHIWNLEAP-----EMPVYSV------KGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDD------ 151 (357)
T ss_dssp SCEEEECTTSC-----SSCSEEE------CCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSS------
T ss_pred CeEEEEeCCCC-----CccEEEE------EecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCC------
Confidence 99999999862 2111111 138899999965 57787 999999999999999986321
Q ss_pred cccccceeeeecCCCCCCCCeeEeeecC----CCeEEEE----ECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCc
Q 008939 272 VIKDQTQFSVAHPRYSKSNPIARWHICQ----GSINSIA----FSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA 343 (548)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~----~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 343 (548)
++..+..|. ..|.+++ |+|++++|++++.|+.|++||+++++.+.. ..|...
T Consensus 152 -------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~ 211 (357)
T 3i2n_A 152 -------------------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNG 211 (357)
T ss_dssp -------------------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSC
T ss_pred -------------------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCc
Confidence 233333333 3788888 788999999999999999999999987554 568899
Q ss_pred eEEEEEcc---CCCEEEEEeCCCeEEEEECCCceeEEecc-----CCCCCeEEEEEecCCCCCCCCCCccceeE-EEEEE
Q 008939 344 LLCCAWSM---DGKYILTGGEDDLVQVWSMEDRKVVAWGE-----GHNSWVSGVAFDSYWSQPNSDGTAETVMY-RFGSV 414 (548)
Q Consensus 344 v~~l~~sp---dg~~l~sgs~dg~I~vwd~~~~~~~~~~~-----~h~~~V~~v~~~p~~~~~~~dg~~~~~~~-~l~s~ 414 (548)
|.+++|+| ++++|++++.|+.|++||+++++.+..+. +|...|.+++|+| ++ . +|+++
T Consensus 212 v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~------~~~l~~~ 278 (357)
T 3i2n_A 212 VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-------QN------RELFLTA 278 (357)
T ss_dssp EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-------TE------EEEEEEE
T ss_pred eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-------CC------CcEEEEE
Confidence 99999999 99999999999999999999876655444 8999999999999 87 5 89999
Q ss_pred eCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEe
Q 008939 415 GQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFT 494 (548)
Q Consensus 415 ~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fs 494 (548)
+.|+.|++||++.+............. .......++..+.+|...|++++|+
T Consensus 279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~----------------------------~~~~~~~~~~~~~~~~~~v~~~~~s 330 (357)
T 3i2n_A 279 GGAGGLHLWKYEYPIQRSKKDSEGIEM----------------------------GVAGSVSLLQNVTLSTQPISSLDWS 330 (357)
T ss_dssp ETTSEEEEEEEECCSCC--CCTTSCCC----------------------------CCCCEEEEEEEEECCSSCEEEEEEC
T ss_pred eCCCcEEEeecCCCcccccccCCCCcc----------------------------ccccccceeeccccCCCCeeEEEEc
Confidence 999999999998766443222100000 0001224567788999999999999
Q ss_pred CCe--EE-EEECCCeEEEEeCCCC
Q 008939 495 QES--VL-TVCREGHIKIWMRPGV 515 (548)
Q Consensus 495 pd~--l~-t~s~Dg~I~iW~~~~~ 515 (548)
|++ |+ +++.||.|++|++...
T Consensus 331 ~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 331 PDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp SSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCCCeEEEEecCCCcEEEEECCCc
Confidence 984 76 8999999999998754
No 46
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-36 Score=307.85 Aligned_cols=302 Identities=15% Similarity=0.187 Sum_probs=242.5
Q ss_pred EEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcce
Q 008939 154 FISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRC 233 (548)
Q Consensus 154 ~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v 233 (548)
..|+... ......+..|...|++++|+|+ +.+|++|+.||.|++||+.+. +.... .. .|...|
T Consensus 49 ~~~~~~~--~~~~~~l~gH~~~V~~~~~sp~---~~~l~s~s~D~~v~iWd~~~~-----~~~~~-~~------~h~~~v 111 (380)
T 3iz6_a 49 VSFNPTD--LVCCRTLQGHSGKVYSLDWTPE---KNWIVSASQDGRLIVWNALTS-----QKTHA-IK------LHCPWV 111 (380)
T ss_dssp CCCCCCC--CEEEEEECCCSSCEEEEEECTT---SSCEEEEETTSEEEEEETTTT-----EEEEE-EE------CCCTTC
T ss_pred cccccce--eEEeecccccccEEEEEEEcCC---CCEEEEEeCCCeEEEEECCCC-----ccceE-Ee------cCCCCE
Confidence 3444443 2366778889999999999998 889999999999999998762 22211 11 378899
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CC
Q 008939 234 TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GT 312 (548)
Q Consensus 234 ~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~ 312 (548)
.+++|+|++. +|++|+.|+.|++||+........ .......+.+|.+.|.++.|+|+ +.
T Consensus 112 ~~~~~s~~g~-~las~~~d~~v~iw~~~~~~~~~~-------------------~~~~~~~~~gh~~~v~~~~~~~~~~~ 171 (380)
T 3iz6_a 112 MECAFAPNGQ-SVACGGLDSACSIFNLSSQADRDG-------------------NMPVSRVLTGHKGYASSCQYVPDQET 171 (380)
T ss_dssp CCCEECTTSS-EEEECCSSSCCEEEECCCCSSCCC-------------------SSTTCCBCCCCSSCCCCCBCCSSSSS
T ss_pred EEEEECCCCC-EEEEeeCCCcEEEEECCCCccccC-------------------CccceeeccCCCcceEEEEEecCCCC
Confidence 9999999999 999999999999999975321110 11234556788899999999996 56
Q ss_pred EEEEEECCCeEEEEeCCCCeEEEee-----eecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECC-CceeEEeccCCCCC
Q 008939 313 YLATVGRDGYLRVFDYSKEQLICGG-----KSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSME-DRKVVAWGEGHNSW 385 (548)
Q Consensus 313 ~l~s~~~dg~v~vwd~~~~~~~~~~-----~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~-~~~~~~~~~~h~~~ 385 (548)
.|++++.|+.|++||+++++.+..+ .+|...|.+++|++ ++++|++|+.|+.|++||++ ..+.+..+.+|...
T Consensus 172 ~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~ 251 (380)
T 3iz6_a 172 RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD 251 (380)
T ss_dssp CEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC
T ss_pred EEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC
Confidence 7999999999999999999988776 57889999999987 88999999999999999998 45778889999999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQP 465 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~ 465 (548)
|.+++|+| +| .+|++++.|+.|++||+++++++..+......
T Consensus 252 v~~v~~~p-------~~------~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~------------------------- 293 (380)
T 3iz6_a 252 INSVKFFP-------DG------QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR------------------------- 293 (380)
T ss_dssp CCEEEECT-------TS------SEEEEECSSSCEEEEETTTTEEEEEECCCCSS-------------------------
T ss_pred eEEEEEec-------CC------CeEEEEcCCCeEEEEECCCCcEEEEecccccc-------------------------
Confidence 99999999 98 79999999999999999999887765441100
Q ss_pred CCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcc------ccCCCCcEE--EecCCCCc
Q 008939 466 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAES------QSSSSETVL--STSSKDKP 535 (548)
Q Consensus 466 ~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~------~~~~~~~v~--~~s~d~~~ 535 (548)
...+...|++++|+|++ |++++.||.|++||+...... ...|...|. +++||+++
T Consensus 294 ---------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 358 (380)
T 3iz6_a 294 ---------------NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSA 358 (380)
T ss_dssp ---------------SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred ---------------cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCE
Confidence 01234568999999974 999999999999998765522 135666665 88999999
Q ss_pred eEeeeccccc
Q 008939 536 LLSSKVVTSS 545 (548)
Q Consensus 536 l~s~~~~g~~ 545 (548)
|+++...|.+
T Consensus 359 l~sgs~D~~i 368 (380)
T 3iz6_a 359 LCTGSWDKNL 368 (380)
T ss_dssp EEEECTTSCE
T ss_pred EEEeeCCCCE
Confidence 9999877654
No 47
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-35 Score=293.70 Aligned_cols=314 Identities=18% Similarity=0.209 Sum_probs=261.4
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
+...+.+++|+|+ +..++++..++.+.+|+... ........ .|...|++++|+|+++ +|++++
T Consensus 8 ~~~~v~~~~~s~d---g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-------~h~~~v~~~~~~~~~~-~l~~~~- 70 (337)
T 1gxr_A 8 GSKPAYSFHVTAD---GQMQPVPFPPDALIGPGIPR-----HARQINTL-------NHGEVVCAVTISNPTR-HVYTGG- 70 (337)
T ss_dssp EEEECCEEEECSS---SCEEECCCCTTSSSSTTCCS-----EEEEEEEE-------CCSSCCCEEEECSSSS-EEEEEC-
T ss_pred cCCceeEEEECCC---CCEEEeecCCCcEeccccCC-----ccccceec-------cCCCceEEEEEecCCc-EEEEcC-
Confidence 4567899999999 88898888888776664332 11111111 2789999999999999 888888
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee--ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH--ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS 329 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~ 329 (548)
||.|++||+...... ..+..+. .|...|.+++|+|++++|++++.|+.|++||++
T Consensus 71 dg~i~iw~~~~~~~~-----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 127 (337)
T 1gxr_A 71 KGCVKVWDISHPGNK-----------------------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp BSEEEEEETTSTTCC-----------------------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred CCeEEEEECCCCCce-----------------------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 999999999863211 1223333 577899999999999999999999999999999
Q ss_pred CCe--EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 330 KEQ--LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 330 ~~~--~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
+++ ....+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+| ++
T Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-------~~----- 195 (337)
T 1gxr_A 128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-------DG----- 195 (337)
T ss_dssp CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-------TS-----
T ss_pred CCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-------CC-----
Confidence 877 5667788999999999999999999999999999999999999999999999999999999 88
Q ss_pred eEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC
Q 008939 408 MYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP 487 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~ 487 (548)
.+|++++.|+.|++||+++++.+..+.....+..+.+++++ ..+..+..++.+++||+...+. ..+..|...
T Consensus 196 -~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~ 267 (337)
T 1gxr_A 196 -TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG------EWLAVGMESSNVEVLHVNKPDK-YQLHLHESC 267 (337)
T ss_dssp -SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTS------SEEEEEETTSCEEEEETTSSCE-EEECCCSSC
T ss_pred -CEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCC------CEEEEEcCCCcEEEEECCCCCe-EEEcCCccc
Confidence 78999999999999999999999888877777788888776 4667788889999999988765 467789999
Q ss_pred eeEEEEeCC--eEEEEECCCeEEEEeCCCCCcc-ccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 488 LSGLIFTQE--SVLTVCREGHIKIWMRPGVAES-QSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 488 V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~-~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
|.+++|+|+ .|++++.||.|++|++...... ...+...+. +++|++++|+++...|.+
T Consensus 268 v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred eeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeE
Confidence 999999997 4999999999999999876643 334556665 789999999999887654
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.3e-36 Score=310.07 Aligned_cols=318 Identities=13% Similarity=0.161 Sum_probs=252.6
Q ss_pred CceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc
Q 008939 132 SMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ 210 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~ 210 (548)
.++.++|+|+|+++++++.| .+++||+.+.. ....+..+ ..+.+..|+|+ +.+|++|+.||.|++||++..
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~-- 129 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRD--GSKMLKRA-DYTAVDTAKLQ---MRRFILGTTEGDIKVLDSNFN-- 129 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEE--TTTTSCSC-CEEEEEEECSS---SCEEEEEETTSCEEEECTTSC--
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccc--eeeEEecC-CceEEEEEecC---CCEEEEEECCCCEEEEeCCCc--
Confidence 34578999999999998877 99999998744 33333323 33445567887 789999999999999998751
Q ss_pred ccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCC
Q 008939 211 DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSN 290 (548)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (548)
..... ...|...|++++|+|++. +|++++.|+.|++||++. ..
T Consensus 130 ----~~~~~------~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~--------------------------~~ 172 (420)
T 3vl1_A 130 ----LQREI------DQAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKD--------------------------GS 172 (420)
T ss_dssp ----EEEEE------TTSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT--------------------------CC
T ss_pred ----ceeee------cccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCC--------------------------Cc
Confidence 11111 124889999999999998 999999999999999986 23
Q ss_pred CeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee---cCCceE---------------------E
Q 008939 291 PIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS---YYGALL---------------------C 346 (548)
Q Consensus 291 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~---~~~~v~---------------------~ 346 (548)
.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.. +...+. +
T Consensus 173 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~ 252 (420)
T 3vl1_A 173 NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252 (420)
T ss_dssp CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCT
T ss_pred CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccc
Confidence 4667788999999999999999999999999999999999998888764 333444 4
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCceeEEecc-CCCCCeEEEEEecCCCCCCCCCCccceeE-EEEEEeCCCeEEEEE
Q 008939 347 CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMY-RFGSVGQDTRLLLWD 424 (548)
Q Consensus 347 l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~dg~~~~~~~-~l~s~~~Dg~i~lwd 424 (548)
++|+|++++|++|+.|+.|++||+++++.+..+. .|...|.+++|+| ++ . +|++++.|+.|++||
T Consensus 253 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-------~~------~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 253 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDG-------NN------ANYIYAGYENGMLAQWD 319 (420)
T ss_dssp TCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECS-------SC------TTEEEEEETTSEEEEEE
T ss_pred eEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeC-------CC------CCEEEEEeCCCeEEEEE
Confidence 5557899999999999999999999988776664 5899999999999 87 5 899999999999999
Q ss_pred CCCCeE-EeeeecC--CCCCCceecCCCCccccCCeeeecccCCCCceeecCCC---------CceEEeecCCCCeeEEE
Q 008939 425 LEMDEI-VVPLRRG--PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL---------SPLVAHRVHTEPLSGLI 492 (548)
Q Consensus 425 ~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~---------~~~~~~~~h~~~V~~l~ 492 (548)
+++++. +..+..+ ..+..+.+. ++ ..+..+..++.+++|++... .....+..|...|.+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~------~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 392 (420)
T 3vl1_A 320 LRSPECPVGEFLINEGTPINNVYFA-AG------ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFC 392 (420)
T ss_dssp TTCTTSCSEEEEESTTSCEEEEEEE-TT------EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEE
T ss_pred cCCCcCchhhhhccCCCCceEEEeC-CC------CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEE
Confidence 998754 5555532 233333332 22 35677888889999998762 33445668899999999
Q ss_pred EeCC-----eEEEEECCCeEEEEeCCC
Q 008939 493 FTQE-----SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 493 fspd-----~l~t~s~Dg~I~iW~~~~ 514 (548)
|+|+ .|++++.+|.+++|++..
T Consensus 393 ~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 393 YVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EccCCCCcceEEEEcCCceEEEEeccC
Confidence 9996 389999999999999864
No 49
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.4e-36 Score=303.74 Aligned_cols=286 Identities=14% Similarity=0.122 Sum_probs=231.5
Q ss_pred ccCCCCCCceeEEeCCCC-CEEEEecCC-eEEEEEccCCCCCCeEEEe--cCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 125 GASSSSTSMTNTNFDGKG-TYIIFNVGD-AIFISDLNSQDKDPIKSIH--FSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g-~~l~~~~~d-~v~vwd~~~~~~~~i~~~~--~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
...+|...|.+++|+|++ .++++++.| .|+|||+.++. ....+. .+...+.+++|+|+ ++.+|++++.||.|
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN--KTSFIQGMGPGDAITGMKFNQF--NTNQLFVSSIRGAT 143 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT--CEEEECCCSTTCBEEEEEEETT--EEEEEEEEETTTEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc--cceeeecCCcCCceeEEEeCCC--CCCEEEEEeCCCEE
Confidence 446789999999999999 899998887 99999999855 555554 48889999999994 16799999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
++||++.. .+.... ....+...|.+++|+|++. +|++++.|+.|++||++.
T Consensus 144 ~iwd~~~~------~~~~~~----~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~------------------ 194 (383)
T 3ei3_B 144 TLRDFSGS------VIQVFA----KTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDG------------------ 194 (383)
T ss_dssp EEEETTSC------EEEEEE----CCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTS------------------
T ss_pred EEEECCCC------ceEEEe----ccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCC------------------
Confidence 99998741 111111 1112568899999999999 999999999999999852
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCC----CeEEEeeeecCCceEEEEEcc-CCC
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSK----EQLICGGKSYYGALLCCAWSM-DGK 354 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~----~~~~~~~~~~~~~v~~l~~sp-dg~ 354 (548)
.++..+..|...|.+++|+|+++ +|++++.|+.|++||+++ ++++..+ .|...|.+++|+| +++
T Consensus 195 ---------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~ 264 (383)
T 3ei3_B 195 ---------HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST 264 (383)
T ss_dssp ---------CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC
T ss_pred ---------CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC
Confidence 35677888999999999999998 999999999999999987 5666666 6999999999999 999
Q ss_pred EEEEEeCCCeEEEEECCCceeEEeccCCC-------C----------CeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 355 YILTGGEDDLVQVWSMEDRKVVAWGEGHN-------S----------WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 355 ~l~sgs~dg~I~vwd~~~~~~~~~~~~h~-------~----------~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
+|++++.|+.|++||+++++.+..+.+|. . .+..++|+| || .+ +++.|
T Consensus 265 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-------dg------~~--s~s~d 329 (383)
T 3ei3_B 265 KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP-------DD------QL--LLNDK 329 (383)
T ss_dssp EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC-------CT------TT--CTTCC
T ss_pred EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC-------Cc------cc--ccCCC
Confidence 99999999999999999887666655442 2 334455666 65 22 77789
Q ss_pred CeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe
Q 008939 418 TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES 497 (548)
Q Consensus 418 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~ 497 (548)
+.|++||+.+++++..+.. ..|...+..++|+|++
T Consensus 330 ~~i~iwd~~~~~~~~~l~~---------------------------------------------~~~~~~~~~~~~s~~g 364 (383)
T 3ei3_B 330 RTIDIYDANSGGLVHQLRD---------------------------------------------PNAAGIISLNKFSPTG 364 (383)
T ss_dssp CCEEEEETTTCCEEEEECB---------------------------------------------TTBCSCCCEEEECTTS
T ss_pred CeEEEEecCCCceeeeecC---------------------------------------------CCCCceEEEEEEecCc
Confidence 9999999999887765543 1256778888999974
Q ss_pred --EEEEECCCeEEEEeCCC
Q 008939 498 --VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 498 --l~t~s~Dg~I~iW~~~~ 514 (548)
|++++ |+.|+|||+.+
T Consensus 365 ~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 365 DVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SEEEEEE-TTEEEEEECC-
T ss_pred cEEEEec-CCcEEEEecCC
Confidence 77886 99999999874
No 50
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5e-35 Score=292.34 Aligned_cols=284 Identities=14% Similarity=0.143 Sum_probs=224.5
Q ss_pred CeEEEecCCCCceEEEe-----cCCCCCCceEEEEEcCCcEEEEEeeeccccc-ccceeeeeeeccCCcccCcceEEEEE
Q 008939 165 PIKSIHFSNSNPVCHAF-----DQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV-GKKLVGAHHYNKDGSVNNSRCTSVTW 238 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~-----~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~ 238 (548)
....+..|...|++++| ++. ++.+|++|+.|+.|++||+....... ...... ....|...|++++|
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~--d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~------~l~~h~~~V~~~~~ 84 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENE--DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHK------ALTGHNHFVSDLAL 84 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTC--CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEE------EECCCSSCEEEEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCC--CCCEEEEEcCCCEEEEEECCcCCcccccccccc------hhccCCCceEEEEE
Confidence 45567778899999999 541 37899999999999999997521110 000111 11248899999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE
Q 008939 239 VPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG 318 (548)
Q Consensus 239 ~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~ 318 (548)
+|++. +|++++.|+.|++||+++ ...+..+..|...|.+++|+|++++|++++
T Consensus 85 ~~~~~-~l~s~s~D~~v~lwd~~~--------------------------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~ 137 (343)
T 2xzm_R 85 SQENC-FAISSSWDKTLRLWDLRT--------------------------GTTYKRFVGHQSEVYSVAFSPDNRQILSAG 137 (343)
T ss_dssp CSSTT-EEEEEETTSEEEEEETTS--------------------------SCEEEEEECCCSCEEEEEECSSTTEEEEEE
T ss_pred CCCCC-EEEEEcCCCcEEEEECCC--------------------------CcEEEEEcCCCCcEEEEEECCCCCEEEEEc
Confidence 99998 999999999999999986 245677888999999999999999999999
Q ss_pred CCCeEEEEeCCCCeEEEeee---ecCCceEEEEEccCC----------CEEEEEeCCCeEEEEECCCceeEEeccCCCCC
Q 008939 319 RDGYLRVFDYSKEQLICGGK---SYYGALLCCAWSMDG----------KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 385 (548)
Q Consensus 319 ~dg~v~vwd~~~~~~~~~~~---~~~~~v~~l~~spdg----------~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~ 385 (548)
.|+.|++||+.... ..... .|...|.+++|+|++ .+|++++.|+.|++||. +.+....+.+|...
T Consensus 138 ~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~ 215 (343)
T 2xzm_R 138 AEREIKLWNILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESN 215 (343)
T ss_dssp TTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSC
T ss_pred CCCEEEEEeccCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcccc
Confidence 99999999998443 33332 688899999999987 78999999999999994 56777788899999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQP 465 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~ 465 (548)
|.+++|+| +| .+|++++.|+.|++||+......
T Consensus 216 v~~~~~s~-------~g------~~l~sgs~dg~v~iwd~~~~~~~---------------------------------- 248 (343)
T 2xzm_R 216 VNHLSISP-------NG------KYIATGGKDKKLLIWDILNLTYP---------------------------------- 248 (343)
T ss_dssp EEEEEECT-------TS------SEEEEEETTCEEEEEESSCCSSC----------------------------------
T ss_pred ceEEEECC-------CC------CEEEEEcCCCeEEEEECCCCccc----------------------------------
Confidence 99999999 99 79999999999999998542211
Q ss_pred CCceeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCccc---------------cCCCCcEE--
Q 008939 466 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAESQ---------------SSSSETVL-- 527 (548)
Q Consensus 466 ~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~~~---------------~~~~~~v~-- 527 (548)
...+ .+...|.+++|+|+. +++++.|+.|++|++.+..... ..|...+.
T Consensus 249 ------------~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 315 (343)
T 2xzm_R 249 ------------QREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL 315 (343)
T ss_dssp ------------SEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE
T ss_pred ------------ceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE
Confidence 0111 234569999999985 7778889999999987654211 13455565
Q ss_pred EecCCCCceEeeeccccc
Q 008939 528 STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 528 ~~s~d~~~l~s~~~~g~~ 545 (548)
+|+|++++|++|...|.+
T Consensus 316 ~~sp~g~~l~sg~~Dg~v 333 (343)
T 2xzm_R 316 AWNALGKKLFAGFTDGVI 333 (343)
T ss_dssp EECSSSCCEEEEETTSEE
T ss_pred EECCCCCeEEEecCCceE
Confidence 889999999999887654
No 51
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.3e-35 Score=321.71 Aligned_cols=306 Identities=17% Similarity=0.220 Sum_probs=239.5
Q ss_pred cCCCCCCceeEEeCCCC-CEEEEecCC-eEEEEEccCCCC---CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 126 ASSSSTSMTNTNFDGKG-TYIIFNVGD-AIFISDLNSQDK---DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g-~~l~~~~~d-~v~vwd~~~~~~---~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
..+|...|.+++|++++ .+|++++.| .|+|||+..... .....+..|...+.+++|+|+ +.+|++|+.||.|
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~---g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD---GQFALSGSWDGEL 454 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT---SSEEEEEETTSEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC---CCEEEEEeCCCcE
Confidence 45899999999999875 688888887 999999986432 134567789999999999998 8899999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
++||+.+. +.... . ..|...|++++|+|++. +|++++.|++|++||+..... ..
T Consensus 455 ~vwd~~~~-----~~~~~-~------~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~-------------~~ 508 (694)
T 3dm0_A 455 RLWDLAAG-----VSTRR-F------VGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECK-------------YT 508 (694)
T ss_dssp EEEETTTT-----EEEEE-E------ECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEE-------------EE
T ss_pred EEEECCCC-----cceeE-E------eCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcc-------------ee
Confidence 99998762 22211 1 13899999999999998 899999999999999753100 00
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCC--CEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDG--TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 358 (548)
+ ......|...|.+++|+|++ .+|++++.|+.|++||+++++++..+.+|.+.|.+++|+|++++|++
T Consensus 509 ~----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s 578 (694)
T 3dm0_A 509 I----------SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS 578 (694)
T ss_dssp E----------CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred e----------ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE
Confidence 0 00113567889999999976 68999999999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 359 gs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
|+.|+.|++||+++++++..+. +...|.+++|+| ++ ++|+ ++.|+.|++||+++++++..+....
T Consensus 579 g~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp-------~~------~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~ 643 (694)
T 3dm0_A 579 GGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSP-------NR------YWLC-AATEHGIKIWDLESKSIVEDLKVDL 643 (694)
T ss_dssp EETTSBCEEEETTTTEEEECCB-CSSCEEEEEECS-------SS------SEEE-EEETTEEEEEETTTTEEEEEECCCC
T ss_pred EeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcC-------CC------cEEE-EEcCCCEEEEECCCCCChhhhcccc
Confidence 9999999999999999988887 557899999999 88 4555 4557779999999999887775421
Q ss_pred CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 439 LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 439 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
.......... .......+...+++++|+|++ |++|+.||.|+||++.
T Consensus 644 ~~~~~~~~~~----------------------------~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 644 KAEAEKADNS----------------------------GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp C--------------------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccccccccc----------------------------ccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 1100000000 000111234458899999984 9999999999999985
No 52
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-35 Score=287.15 Aligned_cols=282 Identities=13% Similarity=0.151 Sum_probs=241.6
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.+|...|.+++| +++.++++++.| .|+|||+.++. .+..+..+...+.+++|+|+ +.+|++++.||.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW--LGTVVYTGQGFLNSVCYDSE---KELLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE--EEEEEEECSSCEEEEEEETT---TTEEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE--EEEEeecCCccEEEEEECCC---CCEEEEecCCCeEEEE
Confidence 45689999999999 999999998888 99999998743 77777888999999999998 8899999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
++.... ..+.+.. . ..|...|.+++| ++. +|++++.||.|++||..
T Consensus 87 ~~~~~~--~~~~~~~-~------~~~~~~i~~~~~--~~~-~l~~~~~d~~i~~~d~~---------------------- 132 (313)
T 3odt_A 87 PLFATS--GEDPLYT-L------IGHQGNVCSLSF--QDG-VVISGSWDKTAKVWKEG---------------------- 132 (313)
T ss_dssp ETTCCT--TSCC-CE-E------CCCSSCEEEEEE--ETT-EEEEEETTSEEEEEETT----------------------
T ss_pred EeeecC--CCCcccc-h------hhcccCEEEEEe--cCC-EEEEEeCCCCEEEEcCC----------------------
Confidence 987621 1111111 1 137899999999 345 89999999999999922
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeee-cCCceEEEEEccCCCEEEEEeC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKS-YYGALLCCAWSMDGKYILTGGE 361 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~sgs~ 361 (548)
..+..+..|...|.+++|+| ++++|++++.|+.|++|| ..+.+..+.. |...+.+++|+|++. +++++.
T Consensus 133 ------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~ 203 (313)
T 3odt_A 133 ------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN 203 (313)
T ss_dssp ------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET
T ss_pred ------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC
Confidence 34667778889999999998 899999999999999999 4566666666 889999999999998 999999
Q ss_pred CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCC
Q 008939 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGG 441 (548)
Q Consensus 362 dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~ 441 (548)
|+.|++||+++++++..+.+|...|.+++|+| ++ .|++++.|+.|++||+++++++..+
T Consensus 204 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-------~~-------~l~~~~~dg~v~iwd~~~~~~~~~~------- 262 (313)
T 3odt_A 204 DGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-------NG-------DIVSCGEDRTVRIWSKENGSLKQVI------- 262 (313)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECT-------TS-------CEEEEETTSEEEEECTTTCCEEEEE-------
T ss_pred CCeEEEEECCchhhhhhhhcCCceEEEEEEec-------CC-------CEEEEecCCEEEEEECCCCceeEEE-------
Confidence 99999999999999999999999999999999 87 4889999999999999988766544
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~ 516 (548)
..|...|++++|+|+. +++++.||.|++|++....
T Consensus 263 ----------------------------------------~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 263 ----------------------------------------TLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp ----------------------------------------ECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred ----------------------------------------eccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence 3477889999999985 8899999999999998755
No 53
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=332.52 Aligned_cols=376 Identities=13% Similarity=0.022 Sum_probs=265.1
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
...+|...|.+++|+|++.+|++++.| .|+||+..... .+..+ .+...|.+++|+| +.+|++++.|+.|++|
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~--~~~~~-~~~~~V~~l~fsp----g~~L~S~s~D~~v~lW 84 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE--VVIKL-EDRSAIKEMRFVK----GIYLVVINAKDTVYVL 84 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCE--EEEEC-SSCCCEEEEEEET----TTEEEEEETTCEEEEE
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE--EEEEc-CCCCCEEEEEEcC----CCEEEEEECcCeEEEE
Confidence 344788999999999999999999988 99999987532 33333 3677899999999 2389999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
|+++ ++ ...... |...|++++|+|++. +|++|+.||.|++||++..... . +.+..
T Consensus 85 d~~~-----~~-~~~~~~-------~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~--~---------~~i~~ 139 (902)
T 2oaj_A 85 SLYS-----QK-VLTTVF-------VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLS--S---------FKLDN 139 (902)
T ss_dssp ETTT-----CS-EEEEEE-------CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEE--E---------EEECC
T ss_pred ECCC-----Cc-EEEEEc-------CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccc--c---------ceecc
Confidence 9976 22 222222 567899999999999 9999999999999999863110 0 00000
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeec------------------CCce
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSY------------------YGAL 344 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~------------------~~~v 344 (548)
. ......+..|.+.|.+++|+|+ +..|++++.|+.| +||+++++++..+..| ...|
T Consensus 140 --~--~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V 214 (902)
T 2oaj_A 140 --L--QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKV 214 (902)
T ss_dssp --H--HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCE
T ss_pred --c--cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCe
Confidence 0 0000123567899999999995 5789999999999 9999999988877655 4779
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCceeEEe--c---cC-------------CCCCeEEEEEecCCCCCCCCCCccc
Q 008939 345 LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW--G---EG-------------HNSWVSGVAFDSYWSQPNSDGTAET 406 (548)
Q Consensus 345 ~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~--~---~~-------------h~~~V~~v~~~p~~~~~~~dg~~~~ 406 (548)
.+++|+|+|++|++|+.|+.|++||+++++++.. + .. |...|.+++|++.. ++|+
T Consensus 215 ~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~---~pd~---- 287 (902)
T 2oaj_A 215 IQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN---NPEY---- 287 (902)
T ss_dssp EEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECS---STTE----
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecC---CCCC----
Confidence 9999999999999999999999999999887653 3 12 35579999997510 0032
Q ss_pred eeEEEEEEeCC-----CeEEEEECC------------------CCeEEeeeec--CCCCCCceecCCC-C--ccccC-Ce
Q 008939 407 VMYRFGSVGQD-----TRLLLWDLE------------------MDEIVVPLRR--GPLGGSPTFSTGS-Q--SAHWD-NV 457 (548)
Q Consensus 407 ~~~~l~s~~~D-----g~i~lwd~~------------------~~~~~~~~~~--~~~~~~~~~~~~~-~--~~~~d-~~ 457 (548)
..+|++++.| ..|.+|++. ..++...+.. ...+..+.+.+.. . ....+ ..
T Consensus 288 -~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~ 366 (902)
T 2oaj_A 288 -TSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGL 366 (902)
T ss_dssp -EEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSE
T ss_pred -CEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCcee
Confidence 1567788766 379999853 2223333321 1222233333311 1 01122 23
Q ss_pred eeecccCCCCceeecCCCCceE-----------------------------------------EeecCCCCeeEEEEeCC
Q 008939 458 CPVGTLQPAPSMRDVPKLSPLV-----------------------------------------AHRVHTEPLSGLIFTQE 496 (548)
Q Consensus 458 ~~~g~~~~~~~~~d~~~~~~~~-----------------------------------------~~~~h~~~V~~l~fspd 496 (548)
+..+..++.+++|+++...+.. .+.+|...+..++|+|+
T Consensus 367 l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd 446 (902)
T 2oaj_A 367 ILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY 446 (902)
T ss_dssp EEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE
T ss_pred EEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc
Confidence 4455557778888875443221 13455566666777887
Q ss_pred e--EEEEECCCeEEEEeCCCCCccc-------------cCCCCcEE--EecCCCCceEeeeccccc
Q 008939 497 S--VLTVCREGHIKIWMRPGVAESQ-------------SSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 497 ~--l~t~s~Dg~I~iW~~~~~~~~~-------------~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
+ |+||+.|++||+||+..+.... ..|...|. +|+||+++||+|...|.+
T Consensus 447 g~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV 512 (902)
T 2oaj_A 447 GTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDV 512 (902)
T ss_dssp EEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCE
T ss_pred CcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEE
Confidence 4 9999999999999998764321 15666776 889999999999887654
No 54
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.3e-35 Score=302.46 Aligned_cols=339 Identities=16% Similarity=0.177 Sum_probs=268.4
Q ss_pred ccCCCCCCc-eeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 125 GASSSSTSM-TNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 125 ~~~~h~~~v-~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
.+.+|...+ .++.| ++.++++++.| .|++||+.++. .+..+..|...+.+++|+|+ + .|++|+.||.|++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~---~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK--FLLQLSGHDGGVWALKYAHG---G-ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECST---T-EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc--EEEEEeCCCcCEEEEEEcCC---C-EEEEEeCCCCEEE
Confidence 455677765 55666 56789998887 99999999854 88888899999999999987 4 8999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEec--CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP--GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p--~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
||+++ ++.+.. . ..|...|.+++|++ ++. +|++++.||.|++||++........... .... .
T Consensus 188 wd~~~-----~~~~~~-~------~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~~--~ 251 (464)
T 3v7d_B 188 WDIKK-----GCCTHV-F------EGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEE-HDYP--L 251 (464)
T ss_dssp EETTT-----TEEEEE-E------CCCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC-------CCSS--E
T ss_pred EECCC-----CcEEEE-E------CCCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCccccccccc-CCcc--e
Confidence 99976 222211 1 13889999999995 555 8999999999999999864322111100 0000 0
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
...........+..+..|...|.++ ++++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 329 (464)
T 3v7d_B 252 VFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329 (464)
T ss_dssp EESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred EeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe
Confidence 0001111223366778888898887 56788999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCC
Q 008939 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG 440 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~ 440 (548)
.|+.|++||+++++++..+.+|...|.++.|++ .+|++++.|+.|++||+++++...........
T Consensus 330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---------------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 394 (464)
T 3v7d_B 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLSD---------------KFLVSAAADGSIRGWDANDYSRKFSYHHTNLS 394 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECS---------------SEEEEEETTSEEEEEETTTCCEEEEEECTTCC
T ss_pred CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC---------------CEEEEEeCCCcEEEEECCCCceeeeecCCCCc
Confidence 999999999999999999999999999999965 58999999999999999999888777765666
Q ss_pred CCceecCCCCccccCCeeeecccCCCCceeecCCCCceEE-eecCCCCeeEEEEeCCeE-EEEECCCeEEEEe
Q 008939 441 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA-HRVHTEPLSGLIFTQESV-LTVCREGHIKIWM 511 (548)
Q Consensus 441 ~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~-~~~h~~~V~~l~fspd~l-~t~s~Dg~I~iW~ 511 (548)
..+.+++++ ..+..+. ++.+++||+.+.+++.. +..|...|.+++|+.+.+ ++++.||.+.+|-
T Consensus 395 ~~~~~~~~~------~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 395 AITTFYVSD------NILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CEEEEEECS------SEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred cEEEEEeCC------CEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEE
Confidence 667777765 3555565 78899999999988875 677899999999998764 4556677665554
No 55
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.4e-36 Score=303.21 Aligned_cols=289 Identities=15% Similarity=0.228 Sum_probs=233.1
Q ss_pred cCCCCCCceeEEeCCC---CC--EEEEecCCeEEEEEccCCCCCCeEEEec-----CCCCceEEEecCCCCC-CceEEEE
Q 008939 126 ASSSSTSMTNTNFDGK---GT--YIIFNVGDAIFISDLNSQDKDPIKSIHF-----SNSNPVCHAFDQDAKD-GHDLLIG 194 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~---g~--~l~~~~~d~v~vwd~~~~~~~~i~~~~~-----~~~~~~~~~~~p~~~~-~~~l~~g 194 (548)
..+|...|.+++|+|+ +. +++++.++.|+|||+.++. .+..+.. +...+.+++|+|+... +.+|++|
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQG--EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGG--CEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCc--EEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 3479999999999984 33 5555556699999999754 5555543 4467999999998543 5689999
Q ss_pred EcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 195 LNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 195 ~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
+.||.|++||+.+ .+.+.. .. .|...|++++|+| ++. +|++++.||.|++||++..
T Consensus 92 ~~dg~i~v~d~~~-----~~~~~~-~~------~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~---------- 148 (366)
T 3k26_A 92 GSRGIIRIINPIT-----MQCIKH-YV------GHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTD---------- 148 (366)
T ss_dssp ETTCEEEEECTTT-----CCEEEE-EE------SCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTT----------
T ss_pred cCCCEEEEEEchh-----ceEeee-ec------CCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecC----------
Confidence 9999999999876 222221 11 3789999999999 666 9999999999999999862
Q ss_pred cccceeeeecCCCCCCCCeeEe---eecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee-----------
Q 008939 274 KDQTQFSVAHPRYSKSNPIARW---HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS----------- 339 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~----------- 339 (548)
..+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..
T Consensus 149 ----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (366)
T 3k26_A 149 ----------------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNR 212 (366)
T ss_dssp ----------------EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSS
T ss_pred ----------------eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcc
Confidence 233444 56889999999999999999999999999999998765443332
Q ss_pred -----------------cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce--------------eEEeccCCCCCeEE
Q 008939 340 -----------------YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK--------------VVAWGEGHNSWVSG 388 (548)
Q Consensus 340 -----------------~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~--------------~~~~~~~h~~~V~~ 388 (548)
|...|.+++|+ +++|++++.|+.|++||+++++ .+..+..|...|.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 290 (366)
T 3k26_A 213 PFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWY 290 (366)
T ss_dssp CCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSC
T ss_pred cccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEE
Confidence 88999999999 7799999999999999998764 37788889999999
Q ss_pred EEEecCCCCCCCC--CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCC
Q 008939 389 VAFDSYWSQPNSD--GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 389 v~~~p~~~~~~~d--g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
++|+| + + .+|++++.|+.|++||+.+++....
T Consensus 291 ~~~s~-------~~~~------~~l~~~~~dg~i~vwd~~~~~~~~~--------------------------------- 324 (366)
T 3k26_A 291 MRFSM-------DFWQ------KMLALGNQVGKLYVWDLEVEDPHKA--------------------------------- 324 (366)
T ss_dssp CCCEE-------CTTS------SEEEEECTTSCEEEEECCSSSGGGC---------------------------------
T ss_pred EEEcC-------CCCC------cEEEEEecCCcEEEEECCCCCCccc---------------------------------
Confidence 99999 8 7 7999999999999999988754321
Q ss_pred CceeecCCCCceEEeecC--CCCeeEEEEeCC--eEEEEECCCeEEEEeCC
Q 008939 467 PSMRDVPKLSPLVAHRVH--TEPLSGLIFTQE--SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 467 ~~~~d~~~~~~~~~~~~h--~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~ 513 (548)
....+..| ...|++++|+|+ .|++++.||.|++||+.
T Consensus 325 ----------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 325 ----------KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ----------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ----------cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 11233445 789999999997 49999999999999985
No 56
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=305.12 Aligned_cols=328 Identities=10% Similarity=0.097 Sum_probs=238.6
Q ss_pred CCCCCCceeEEeCC-CCCEEEEecCC-eEEEEEccC---CC-CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 127 SSSSTSMTNTNFDG-KGTYIIFNVGD-AIFISDLNS---QD-KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 127 ~~h~~~v~~~~~~~-~g~~l~~~~~d-~v~vwd~~~---~~-~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
.+|...|.+++|+| ++.++++++.| .|+|||+.+ +. .+....+. |...+.+++|+|+ +.+|++++.||.|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~---~~~l~s~s~dg~i 135 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-CSSTVTQITMIPN---FDAFAVSSKDGQI 135 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-CSSCEEEEEECTT---SSEEEEEETTSEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc-CCCCEEEEEEeCC---CCEEEEEeCCCEE
Confidence 57899999999999 99999999888 999999876 32 12344433 7889999999998 7899999999999
Q ss_pred EEEEeeeccccccc-----ceeeeeeeccCCcccCcceEEEE--EecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 201 YSVSLRQQLQDVGK-----KLVGAHHYNKDGSVNNSRCTSVT--WVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 201 ~iwdl~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~l~--~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
++||++........ ..+....+.+.. +...+.++. +++++. +|++++.|+.|++||++.
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~----------- 201 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFG--KNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRT----------- 201 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGS--SCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTT-----------
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcc--cccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCC-----------
Confidence 99999631001000 011111222211 466778887 557777 999999999999999986
Q ss_pred cccceeeeecCCCCCCCCeeEeee--cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEc
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHI--CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWS 350 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~s 350 (548)
..++..+.. |...|++++|+|++++|++++.||.|++||+++++++..+. .|...|.+++|+
T Consensus 202 ---------------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 266 (437)
T 3gre_A 202 ---------------LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVC 266 (437)
T ss_dssp ---------------CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEEC
T ss_pred ---------------CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEec
Confidence 245666766 78999999999999999999999999999999999988876 677899999665
Q ss_pred c----CCCEEEEEeCCCeEEEEECCCceeEEeccCC--------------------------CCCeEEEEEecCCCCCCC
Q 008939 351 M----DGKYILTGGEDDLVQVWSMEDRKVVAWGEGH--------------------------NSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 351 p----dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h--------------------------~~~V~~v~~~p~~~~~~~ 400 (548)
| ++++|++|+.|+.|++||+++++++..+.+| ...|++++|++
T Consensus 267 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~------- 339 (437)
T 3gre_A 267 QFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSN------- 339 (437)
T ss_dssp TTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEET-------
T ss_pred cccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECC-------
Confidence 4 6789999999999999999999888777654 44566777763
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEE
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA 480 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~ 480 (548)
+ .+|++++.|+.|++||+.++++...+..+. .....|........ ..+.. ..++......+..
T Consensus 340 -~------~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~ 402 (437)
T 3gre_A 340 -D------KILLTDEATSSIVMFSLNELSSSKAVISPS-RFSDVFIPTQVTAN--LTMLL-------RKMKRTSTHSVDD 402 (437)
T ss_dssp -T------EEEEEEGGGTEEEEEETTCGGGCEEEECC---CCCEEEEEEEETT--EEEEE-------EECC---------
T ss_pred -c------eEEEecCCCCeEEEEECCCcccceEEeccc-ccCceEEEEEeecc--eEEEE-------EecccccccccCc
Confidence 3 589999999999999999999888776532 11222211110000 00000 0022222333444
Q ss_pred eecCCCCeeEEEEeCC----eEEEEECCCeEEEEe
Q 008939 481 HRVHTEPLSGLIFTQE----SVLTVCREGHIKIWM 511 (548)
Q Consensus 481 ~~~h~~~V~~l~fspd----~l~t~s~Dg~I~iW~ 511 (548)
...|.+.|++|+|+++ .|++|+.||.|+||+
T Consensus 403 ~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 403 SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 5569999999999987 599999999999995
No 57
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6e-35 Score=294.28 Aligned_cols=291 Identities=12% Similarity=0.143 Sum_probs=219.2
Q ss_pred CCCceeEEeCCCCCEEEEecCC--------eEEEEEccCCCCCC------eEE--EecCCCCceEEEecCCCCCCceEEE
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD--------AIFISDLNSQDKDP------IKS--IHFSNSNPVCHAFDQDAKDGHDLLI 193 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d--------~v~vwd~~~~~~~~------i~~--~~~~~~~~~~~~~~p~~~~~~~l~~ 193 (548)
+-+|++++|+|+|++|++++++ .|+||++....... ... +..+...+.|++++.+ .+++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~-----~~~~ 88 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG-----IILV 88 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT-----EEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC-----EEEE
Confidence 3579999999999999998653 49999998654211 222 3345667888888654 4555
Q ss_pred E-----------EcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEE--EeCCCcEEEEEc
Q 008939 194 G-----------LNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV--GHADGNLYVYEK 260 (548)
Q Consensus 194 g-----------~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s--~~~dg~v~vwd~ 260 (548)
| ..|+.|++|++..... .........+.. ...+...+.+++|+|||+ +|++ ++.|+.|+|||+
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~v~fSpDg~-~la~as~~~d~~i~iwd~ 164 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVND--QLEFLTSVDFDA-STNADDYTKLVYISREGT-VAAIASSKVPAIMRIIDP 164 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTT--EEEEEEEECSSC-CCCTTCCEEEEEECTTSS-CEEEEESCSSCEEEEEET
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCc--eEEEeeeeceee-cCCcccCEEEEEEcCCCC-EEEEEECCCCCEEEEeEC
Confidence 5 3567799999875211 111111111111 112456789999999999 5554 457899999999
Q ss_pred CCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEE--eee
Q 008939 261 SKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC--GGK 338 (548)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~--~~~ 338 (548)
.+. .++..+. |.+.|.+++|+|||++|++++.| .+++|+..+++.+. ...
T Consensus 165 ~~~--------------------------~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~ 216 (365)
T 4h5i_A 165 SDL--------------------------TEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDF 216 (365)
T ss_dssp TTT--------------------------EEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCC
T ss_pred CCC--------------------------cEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecC
Confidence 862 2233333 66889999999999999999855 56677776666543 345
Q ss_pred ecCCceEEEEEccCCCEEEEEeCCC----eEEEEECCCcee----EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 339 SYYGALLCCAWSMDGKYILTGGEDD----LVQVWSMEDRKV----VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 339 ~~~~~v~~l~~spdg~~l~sgs~dg----~I~vwd~~~~~~----~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
.|...|.+++|+|+++++++++.|+ .+++||+..... ...+.+|...|++++|+| || .+
T Consensus 217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-------dg------~~ 283 (365)
T 4h5i_A 217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-------KG------EL 283 (365)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-------TS------CE
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-------CC------Cc
Confidence 6888999999999999999999887 688899876543 456778999999999999 99 79
Q ss_pred EEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeE
Q 008939 411 FGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG 490 (548)
Q Consensus 411 l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~ 490 (548)
|++++.|+.|+|||+++++++..+. .+|...|++
T Consensus 284 lasgs~D~~V~iwd~~~~~~~~~~~----------------------------------------------~gH~~~V~~ 317 (365)
T 4h5i_A 284 AVLASNDNSIALVKLKDLSMSKIFK----------------------------------------------QAHSFAITE 317 (365)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEET----------------------------------------------TSSSSCEEE
T ss_pred eEEEcCCCEEEEEECCCCcEEEEec----------------------------------------------CcccCCEEE
Confidence 9999999999999999988765432 369999999
Q ss_pred EEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 491 LIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 491 l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
|+|+||+ |+|++.|++||||+++...
T Consensus 318 v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 318 VTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 9999984 9999999999999998654
No 58
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.2e-34 Score=282.27 Aligned_cols=275 Identities=14% Similarity=0.172 Sum_probs=230.0
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
....+..|...|.+++|+|+ +.+|++++.||.|++|++... + ..... ..|...|.+++|+|+++
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~---~~~l~s~~~dg~i~iw~~~~~-----~-~~~~~------~~h~~~v~~~~~~~~~~- 78 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPN---GEWLASSSADKLIKIWGAYDG-----K-FEKTI------SGHKLGISDVAWSSDSN- 78 (312)
T ss_dssp EEEEECCCSSCEEEEEECTT---SSEEEEEETTSCEEEEETTTC-----C-EEEEE------CCCSSCEEEEEECTTSS-
T ss_pred eEEEEcccCCcEEEEEECCC---CCEEEEeeCCCeEEEEeCCCc-----c-cchhh------ccCCCceEEEEEcCCCC-
Confidence 34556678889999999998 889999999999999998651 2 11111 13788999999999998
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
+|++++.|+.|++||++. ...+..+..|...|.+++|+|++++|++++.|+.|+
T Consensus 79 ~l~s~~~d~~i~vwd~~~--------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 132 (312)
T 4ery_A 79 LLVSASDDKTLKIWDVSS--------------------------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132 (312)
T ss_dssp EEEEEETTSEEEEEETTT--------------------------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred EEEEECCCCEEEEEECCC--------------------------CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 999999999999999986 245677888999999999999999999999999999
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc-CCCCCeEEEEEecCCCCCCCCCC
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGT 403 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~dg~ 403 (548)
+||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+. .+...+..++|+| ++
T Consensus 133 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~- 204 (312)
T 4ery_A 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-------NG- 204 (312)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-------TS-
T ss_pred EEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-------CC-
Confidence 99999999999999999999999999999999999999999999999988877654 5677899999999 88
Q ss_pred ccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 404 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 404 ~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
.+|++++.|+.|++||+++++++..+..
T Consensus 205 -----~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------------------------------------------- 232 (312)
T 4ery_A 205 -----KYILAATLDNTLKLWDYSKGKCLKTYTG----------------------------------------------- 232 (312)
T ss_dssp -----SEEEEEETTTEEEEEETTTTEEEEEECS-----------------------------------------------
T ss_pred -----CEEEEEcCCCeEEEEECCCCcEEEEEEe-----------------------------------------------
Confidence 7899999999999999999887765543
Q ss_pred CCCCe--eEEEEe-CC--eEEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeec
Q 008939 484 HTEPL--SGLIFT-QE--SVLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKV 541 (548)
Q Consensus 484 h~~~V--~~l~fs-pd--~l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~ 541 (548)
|...+ ....|+ ++ .|++++.||.|++||+..... ....|...+. +++|++++|+++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 299 (312)
T 4ery_A 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 299 (312)
T ss_dssp SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEEC
T ss_pred cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEc
Confidence 22211 122333 33 499999999999999987663 3346777776 78899999999863
No 59
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-34 Score=294.48 Aligned_cols=289 Identities=19% Similarity=0.226 Sum_probs=226.0
Q ss_pred cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeecc------------CCcccCcceEEEEE
Q 008939 171 FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNK------------DGSVNNSRCTSVTW 238 (548)
Q Consensus 171 ~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~v~~l~~ 238 (548)
.|...+.|++|+|+ +.+|++|+ ++.+++|++... +.+.. ..... ....+...|++++|
T Consensus 62 ~h~~~V~~v~fspd---g~~la~g~-~~~v~i~~~~~g-----~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 131 (393)
T 1erj_A 62 DHTSVVCCVKFSND---GEYLATGC-NKTTQVYRVSDG-----SLVAR-LSDDSAANKDPENLNTSSSPSSDLYIRSVCF 131 (393)
T ss_dssp ECSSCCCEEEECTT---SSEEEEEC-BSCEEEEETTTC-----CEEEE-ECC-----------------CCCCBEEEEEE
T ss_pred CCCCEEEEEEECCC---CCEEEEEc-CCcEEEEEecCC-----CEEEE-ecCccccccccccccccccCCCceeEEEEEE
Confidence 38889999999998 77888876 789999998752 11111 00000 00012345999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE
Q 008939 239 VPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG 318 (548)
Q Consensus 239 ~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~ 318 (548)
+|++. +|++|+.|+.|++||+.. ...+..+.+|...|.+++|+|++++|++++
T Consensus 132 s~dg~-~l~s~~~d~~i~iwd~~~--------------------------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s 184 (393)
T 1erj_A 132 SPDGK-FLATGAEDRLIRIWDIEN--------------------------RKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184 (393)
T ss_dssp CTTSS-EEEEEETTSCEEEEETTT--------------------------TEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCC-EEEEEcCCCeEEEEECCC--------------------------CcEEEEEccCCCCEEEEEEcCCCCEEEEec
Confidence 99999 999999999999999976 234667788999999999999999999999
Q ss_pred CCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCCceeEEec-------cCCCCCeEEEE
Q 008939 319 RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWG-------EGHNSWVSGVA 390 (548)
Q Consensus 319 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~~~~~~~-------~~h~~~V~~v~ 390 (548)
.|+.|++||++++++...+. +...+.+++|+| ++++|++|+.|+.|++||+++++.+..+ .+|...|.+++
T Consensus 185 ~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 263 (393)
T 1erj_A 185 GDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 263 (393)
T ss_dssp TTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred CCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEE
Confidence 99999999999999887776 567799999999 8999999999999999999998887766 57999999999
Q ss_pred EecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCcee
Q 008939 391 FDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMR 470 (548)
Q Consensus 391 ~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~ 470 (548)
|+| +| .+|++++.|+.|++||++..........
T Consensus 264 ~~~-------~g------~~l~s~s~d~~v~~wd~~~~~~~~~~~~---------------------------------- 296 (393)
T 1erj_A 264 FTR-------DG------QSVVSGSLDRSVKLWNLQNANNKSDSKT---------------------------------- 296 (393)
T ss_dssp ECT-------TS------SEEEEEETTSEEEEEEC---------------------------------------------
T ss_pred ECC-------CC------CEEEEEeCCCEEEEEECCCCCCcccccC----------------------------------
Confidence 999 98 7899999999999999987554321111
Q ss_pred ecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCc--cccCCCCcEE--Eec------CCCCceEe
Q 008939 471 DVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STS------SKDKPLLS 538 (548)
Q Consensus 471 d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s------~d~~~l~s 538 (548)
.........+.+|...|.+++|+|+ .|++++.|+.|++||+..+.. ....|...|. +++ |++++|++
T Consensus 297 -~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~s 375 (393)
T 1erj_A 297 -PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 375 (393)
T ss_dssp -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred -CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEE
Confidence 0112234566789999999999996 499999999999999887663 3346777777 444 47889999
Q ss_pred eeccccc
Q 008939 539 SKVVTSS 545 (548)
Q Consensus 539 ~~~~g~~ 545 (548)
+...|.+
T Consensus 376 gs~Dg~i 382 (393)
T 1erj_A 376 GSGDCKA 382 (393)
T ss_dssp EETTSEE
T ss_pred ECCCCcE
Confidence 9877654
No 60
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.8e-36 Score=307.46 Aligned_cols=291 Identities=13% Similarity=0.113 Sum_probs=221.9
Q ss_pred cCCCCCCceeEEeCC-CCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 126 ASSSSTSMTNTNFDG-KGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~-~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
..+|...|++++|+| ++.+|++++.| .|+|||+..+....+..+..|...|++++|+|. ++.+|++|+.||.|++|
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~--~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL--NTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS--CTTEEEEECSSSCEEEE
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC--CCCEEEEEeCCCEEEEe
Confidence 356888999999999 46688888887 999999987654445555568899999999985 27799999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
|++.. .+... .....+...+.+++|+|++. +|++|+.||.|++||++.
T Consensus 193 d~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~--------------------- 240 (435)
T 4e54_B 193 DFKGN------ILRVF----ASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDG--------------------- 240 (435)
T ss_dssp ETTSC------EEEEE----ECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSS---------------------
T ss_pred eccCC------ceeEE----eccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCc---------------------
Confidence 98752 11110 01112456788999999999 999999999999999864
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCeEEE---eeeecCCceEEEEEccCCCEEEEE
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQLIC---GGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~~~~~---~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
+.+..+..|...|.+++|+|++. +|++++.|+.|++||+++.+... ...+|...|.+++|+|+|++|+++
T Consensus 241 ------~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~ 314 (435)
T 4e54_B 241 ------KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314 (435)
T ss_dssp ------CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred ------ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE
Confidence 23445667889999999999875 78899999999999998765433 335789999999999999999999
Q ss_pred eCCCeEEEEECCCceeEEeccCCCC------CeEEEEEecCCCCCCCCCCccceeEEEEEEe------------CCCeEE
Q 008939 360 GEDDLVQVWSMEDRKVVAWGEGHNS------WVSGVAFDSYWSQPNSDGTAETVMYRFGSVG------------QDTRLL 421 (548)
Q Consensus 360 s~dg~I~vwd~~~~~~~~~~~~h~~------~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~------------~Dg~i~ 421 (548)
+.|+.|+|||++++++...+..|.. .+....|+| ++ ..++++. .++.|+
T Consensus 315 ~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~d~~~~~~~~~~~~~i~ 381 (435)
T 4e54_B 315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP-------RY------NLIVVGRYPDPNFKSCTPYELRTID 381 (435)
T ss_dssp ESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS-------SS------SCEEEECCCCTTSCCSSTTCCCCEE
T ss_pred cCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC-------CC------CEEEEEEcCCCCeEEEEecCCCEEE
Confidence 9999999999999887777765543 233456766 54 3444443 234677
Q ss_pred EEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEE-EEeCCe--E
Q 008939 422 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGL-IFTQES--V 498 (548)
Q Consensus 422 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l-~fspd~--l 498 (548)
+||+.+++++..+.. +|...|.++ +|+|++ |
T Consensus 382 iwd~~~g~~~~~l~~----------------------------------------------~~~~~v~s~~~fspdg~~l 415 (435)
T 4e54_B 382 VFDGNSGKMMCQLYD----------------------------------------------PESSGISSLNEFNPMGDTL 415 (435)
T ss_dssp EECSSSCCEEEEECC----------------------------------------------SSCCCCCCEEEECTTSSCE
T ss_pred EEECCCCcEEEEEeC----------------------------------------------CCCCcEEEEEEECCCCCEE
Confidence 777777766544322 577888887 699985 6
Q ss_pred EEEECCCeEEEEeCCCCC
Q 008939 499 LTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 499 ~t~s~Dg~I~iW~~~~~~ 516 (548)
++| .|+.|+||++..++
T Consensus 416 asg-~d~~i~iW~~~~gk 432 (435)
T 4e54_B 416 ASA-MGYHILIWSQQEAR 432 (435)
T ss_dssp EEE-CSSEEEECCCC---
T ss_pred EEE-cCCcEEEEECCcCe
Confidence 655 58899999988654
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.7e-34 Score=296.45 Aligned_cols=313 Identities=12% Similarity=0.143 Sum_probs=265.4
Q ss_pred cCCCCCCc-eeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 126 ASSSSTSM-TNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 126 ~~~h~~~v-~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
+.+|.+.+ .+ +.++|+++++++.| .|+|||+.++. .+..+..|...+.+++|+++ .|++|+.||.|++|
T Consensus 114 l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~-----~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 114 LKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDN-----IIISGSTDRTLKVW 184 (445)
T ss_dssp EECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCC--EEEECCCCSSCEEEEEEETT-----EEEEEETTSCEEEE
T ss_pred ecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCc--EEEEEcCCCCCEEEEEecCC-----EEEEEeCCCeEEEE
Confidence 45677665 44 44568999998888 99999999854 88888889999999999843 89999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
|+.+. +.+. .. ..|...|.++.|++ . .|++++.||.|++||+..
T Consensus 185 d~~~~-----~~~~-~~------~~h~~~v~~~~~~~--~-~l~s~s~dg~i~~wd~~~--------------------- 228 (445)
T 2ovr_B 185 NAETG-----ECIH-TL------YGHTSTVRCMHLHE--K-RVVSGSRDATLRVWDIET--------------------- 228 (445)
T ss_dssp ETTTT-----EEEE-EE------CCCSSCEEEEEEET--T-EEEEEETTSEEEEEESSS---------------------
T ss_pred ECCcC-----cEEE-EE------CCCCCcEEEEEecC--C-EEEEEeCCCEEEEEECCC---------------------
Confidence 98762 2221 11 13788999999963 4 799999999999999986
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
...+..+..|...|.+++| ++++|++++.|+.|++||+++++.+..+..|...|.+++| ++++|++++.|+
T Consensus 229 -----~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~ 299 (445)
T 2ovr_B 229 -----GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT 299 (445)
T ss_dssp -----CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred -----CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC
Confidence 2456677888999999999 7889999999999999999999999999999999999999 788999999999
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC----CC
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG----PL 439 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~----~~ 439 (548)
.|++||+++++++..+.+|...+.++.+++ .+|++++.|+.|++||+++++++..+... ..
T Consensus 300 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~---------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 364 (445)
T 2ovr_B 300 SIRVWDVETGNCIHTLTGHQSLTSGMELKD---------------NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364 (445)
T ss_dssp CEEEEETTTCCEEEEECCCCSCEEEEEEET---------------TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC
T ss_pred eEEEEECCCCCEEEEEcCCcccEEEEEEeC---------------CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCC
Confidence 999999999999999999999999999864 48999999999999999999998888742 22
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEe-----ecCCCCeeEEEEeCCe--EEEEECCCe----EE
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH-----RVHTEPLSGLIFTQES--VLTVCREGH----IK 508 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~-----~~h~~~V~~l~fspd~--l~t~s~Dg~----I~ 508 (548)
+..+.+. ...+..+..++.+++||+...+.+..+ ..|...|++++|+|++ |++++.||+ |.
T Consensus 365 v~~~~~~--------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~ 436 (445)
T 2ovr_B 365 VTCLQFN--------KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 436 (445)
T ss_dssp EEEEEEC--------SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEE
T ss_pred EEEEEEC--------CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEE
Confidence 3333332 256788889999999999999988888 4788999999999985 889999998 99
Q ss_pred EEeCCCC
Q 008939 509 IWMRPGV 515 (548)
Q Consensus 509 iW~~~~~ 515 (548)
+||+...
T Consensus 437 v~df~~~ 443 (445)
T 2ovr_B 437 VLDFDVD 443 (445)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998753
No 62
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.1e-33 Score=281.23 Aligned_cols=297 Identities=18% Similarity=0.241 Sum_probs=234.0
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNS 231 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (548)
.++++.....+.....+++.|...|++++|+|+. +.+|++|+.||.|++||+........... . ....|..
T Consensus 17 ~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~--~~~l~S~s~D~~i~vWd~~~~~~~~~~~~-~------~l~~h~~ 87 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQF--PDMILSASRDKTIIMWKLTRDETNYGIPQ-R------ALRGHSH 87 (340)
T ss_dssp ---------CEEEEEEEECCCSSCEEEEEECTTC--TTEEEEEETTSCEEEEEECCSSSCSEEEE-E------EECCCSS
T ss_pred cEEEEEccCCceEEEEEECCccCCEEEEEEeCCC--CCEEEEEcCCCeEEEEECCCCCcccceee-E------EEeCCCC
Confidence 4555555443333455688899999999999973 56899999999999999986321111111 1 1124889
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC
Q 008939 232 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 311 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g 311 (548)
.|++++|+|++. +|++++.|+.|++|+.... ........+...+..+.+++++
T Consensus 88 ~V~~~~~s~dg~-~l~s~~~d~~i~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~ 140 (340)
T 4aow_A 88 FVSDVVISSDGQ-FALSGSWDGTLRLWDLTTG--------------------------TTTRRFVGHTKDVLSVAFSSDN 140 (340)
T ss_dssp CEEEEEECTTSS-EEEEEETTSEEEEEETTTT--------------------------EEEEEEECCSSCEEEEEECTTS
T ss_pred CEEEEEECCCCC-EEEEEcccccceEEeeccc--------------------------ceeeeecCCCCceeEEEEeecC
Confidence 999999999999 9999999999999998752 2234445566888999999999
Q ss_pred CEEEEEECCCeEEEEeCCCCeE-EEeeeecCCceEEEEEccCC--CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEE
Q 008939 312 TYLATVGRDGYLRVFDYSKEQL-ICGGKSYYGALLCCAWSMDG--KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 388 (548)
Q Consensus 312 ~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~v~~l~~spdg--~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~ 388 (548)
++|++++.|+.+++||+..... ......|...+.+++|++++ .++++++.|+.|++||+++++++..+.+|...|++
T Consensus 141 ~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~ 220 (340)
T 4aow_A 141 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT 220 (340)
T ss_dssp SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEE
Confidence 9999999999999999976644 44567788999999999875 47889999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCc
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPS 468 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~ 468 (548)
++|+| ++ .+|++++.|+.|++||+++.+++..+..
T Consensus 221 ~~~s~-------~~------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-------------------------------- 255 (340)
T 4aow_A 221 VTVSP-------DG------SLCASGGKDGQAMLWDLNEGKHLYTLDG-------------------------------- 255 (340)
T ss_dssp EEECT-------TS------SEEEEEETTCEEEEEETTTTEEEEEEEC--------------------------------
T ss_pred EEECC-------CC------CEEEEEeCCCeEEEEEeccCceeeeecC--------------------------------
Confidence 99999 98 7999999999999999998887654432
Q ss_pred eeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCcc-----------ccCCCCcEE--EecCCCC
Q 008939 469 MRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAES-----------QSSSSETVL--STSSKDK 534 (548)
Q Consensus 469 ~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~~-----------~~~~~~~v~--~~s~d~~ 534 (548)
...|..+.|+|+. +++++.|+.|++||+++.... ...|...|. +++||++
T Consensus 256 ----------------~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 256 ----------------GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp ----------------SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred ----------------CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 4579999999974 889999999999998875421 124556666 7899999
Q ss_pred ceEeeeccccc
Q 008939 535 PLLSSKVVTSS 545 (548)
Q Consensus 535 ~l~s~~~~g~~ 545 (548)
+|+++...|.+
T Consensus 320 ~l~sgs~Dg~v 330 (340)
T 4aow_A 320 TLFAGYTDNLV 330 (340)
T ss_dssp EEEEEETTSCE
T ss_pred EEEEEeCCCEE
Confidence 99999887755
No 63
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=303.98 Aligned_cols=329 Identities=11% Similarity=0.154 Sum_probs=246.9
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCC--CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQD--KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
..|...+.+++|+|++.+|++++.| .|+|||+.... .+.+..+..|...+.+++|+|+. +.+|++++.||.|++|
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ--DNVLASGGNNGEIFIW 141 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS--TTBEEEECSSSCEEBC
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC--CCEEEEEcCCCeEEEE
Confidence 3578899999999999999998877 99999998721 23677788899999999999972 5689999999999999
Q ss_pred Eeeeccccccc-ceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 204 SLRQQLQDVGK-KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 204 dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|++........ .... ......|...|++++|+|++..+|++++.||.|++||++..
T Consensus 142 d~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~------------------- 198 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLT----PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK------------------- 198 (416)
T ss_dssp BTTTTSSCTTTCCCBC----CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-------------------
T ss_pred ECCCCccccccccccc----cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-------------------
Confidence 99863100000 1110 01112478899999999995449999999999999999862
Q ss_pred cCCCCCCCCeeEeeec------CCCeEEEEECCCC-CEEEEEECCC---eEEEEeCCCC-eEEEeee-ecCCceEEEEEc
Q 008939 283 HPRYSKSNPIARWHIC------QGSINSIAFSTDG-TYLATVGRDG---YLRVFDYSKE-QLICGGK-SYYGALLCCAWS 350 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h------~~~v~~~~~sp~g-~~l~s~~~dg---~v~vwd~~~~-~~~~~~~-~~~~~v~~l~~s 350 (548)
..+..+..| ...|.+++|+|++ .+|++++.|+ .|++||++++ +.+..+. +|...|.+++|+
T Consensus 199 -------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s 271 (416)
T 2pm9_A 199 -------KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWC 271 (416)
T ss_dssp -------EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEEC
T ss_pred -------CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeC
Confidence 223333333 6889999999986 6899999998 9999999986 5667777 899999999999
Q ss_pred c-CCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 351 M-DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 351 p-dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
| ++++|++++.|+.|++||+++++++..+.+|...|.+++|+| ++. .+|++++.|+.|++||+....
T Consensus 272 ~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-------~~~-----~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 272 HQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP-------EAP-----DLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp SSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT-------TCT-----TEEEECCSSSEEEEEESCCCC
T ss_pred CCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC-------CCC-----CEEEEEecCCcEEEEEccCCC
Confidence 9 999999999999999999999999999999999999999999 762 489999999999999999876
Q ss_pred EEeeeecC---CCCC-CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEEC
Q 008939 430 IVVPLRRG---PLGG-SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCR 503 (548)
Q Consensus 430 ~~~~~~~~---~~~~-~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~ 503 (548)
........ .... ...+...+ .+..+. ....+. . .....|..++++++|+|++ |++++.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~-----~-~~~~~~~~~~~~~~~s~dg~~la~~~~ 403 (416)
T 2pm9_A 340 NTLDEQETETKQQESETDFWNNVS-------REESKE---KPSVFH-----L-QAPTWYGEPSPAAHWAFGGKLVQITPD 403 (416)
T ss_dssp CSSCC-----------------------------CCS---CCCSSC-----C-CCCSTTCCCSCCCEEETTTEEECBCTT
T ss_pred CCcccccccccccCCccccccccc-------cccccc---cccccc-----c-cCCccccCCccceEEeeCCeEEEEeCC
Confidence 54332110 0000 00010000 000000 000011 1 2223478889999999984 889999
Q ss_pred CCeEEEEeCCCC
Q 008939 504 EGHIKIWMRPGV 515 (548)
Q Consensus 504 Dg~I~iW~~~~~ 515 (548)
|+.|+||++.++
T Consensus 404 d~~v~~w~~~~~ 415 (416)
T 2pm9_A 404 GKGVSITNPKIS 415 (416)
T ss_dssp SSCBCCBCCCCC
T ss_pred CCeEEEEEeccC
Confidence 999999998764
No 64
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=298.70 Aligned_cols=341 Identities=13% Similarity=0.126 Sum_probs=255.0
Q ss_pred EEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEE-ecCCCCceEEEecC-CCCCCceEEEEEcCCcEEEEEeeecccccc
Q 008939 136 TNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSI-HFSNSNPVCHAFDQ-DAKDGHDLLIGLNSGDVYSVSLRQQLQDVG 213 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~-~~~~~~~~~~~~~p-~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~ 213 (548)
..|+|++..++... .|+.. .+.+..+ ..|...|++++|+| + +.+|++|+.||.|++||+........
T Consensus 33 ~~f~~~~~~~~~~~-----~w~~~---g~~~~~~~~~h~~~V~~~~~s~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 33 KEFGPIQEIVRSPN-----MGNLR---GKLIATLMENEPNSITSSAVSPGE---TPYLITGSDQGVIKIWNLKEIIVGEV 101 (437)
T ss_dssp GGGCCCCCCCCCCC-----GGGCC---CCEEEEECTTTTSCEEEEEEECSS---SCEEEEEETTSEEEEEEHHHHHTTCC
T ss_pred hhcCCccccccccc-----ccccc---ceEEeeeccCCCCceEEEEECCCC---CCEEEEecCCceEEEeECcccccCcc
Confidence 35677777766544 37744 3477787 77889999999999 7 78999999999999999876211110
Q ss_pred cceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCC--CCCCCCCcccccccceeeeecCCCCCCCC
Q 008939 214 KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK--DGAGDSSFPVIKDQTQFSVAHPRYSKSNP 291 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (548)
....... .|...|++++|+|++. +|++++.||.|++||++. .+....... ...
T Consensus 102 ~~~~~~~-------~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-----------------~~~ 156 (437)
T 3gre_A 102 YSSSLTY-------DCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLN-----------------CEC 156 (437)
T ss_dssp CSCSEEE-------ECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEE-----------------EEE
T ss_pred cceeeec-------cCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccc-----------------cce
Confidence 1111111 2789999999999998 999999999999999962 111110000 001
Q ss_pred eeEee--e--cCCCeEEEE--ECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee--cCCceEEEEEccCCCEEEEEeCCC
Q 008939 292 IARWH--I--CQGSINSIA--FSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--YYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 292 ~~~~~--~--h~~~v~~~~--~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
+..+. . +...+.++. +++++++|++++.|+.|++||+++++++..+.. |...|.+++|+|++++|++|+.|+
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 236 (437)
T 3gre_A 157 IRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG 236 (437)
T ss_dssp EEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS
T ss_pred eEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC
Confidence 22222 1 456788887 668999999999999999999999999999888 889999999999999999999999
Q ss_pred eEEEEECCCceeEEecc-CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCC
Q 008939 364 LVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGG 441 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~ 441 (548)
.|++||+++++++..+. .|...|.+++|+|.+++ ++ .+|++++.|+.|++||+++++++..+... ....
T Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~---~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 307 (437)
T 3gre_A 237 IIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGK---NS------VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPS 307 (437)
T ss_dssp CEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCT---TE------EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCC
T ss_pred eEEEEEcCCccEEEEEecCCCCceEEEEeccccCC---Cc------cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCc
Confidence 99999999999998876 78889999988773322 56 79999999999999999999999888753 2334
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec--CCCCeeEEEEeCC-eEEEEECCCeEEEEeCCCCCcc
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV--HTEPLSGLIFTQE-SVLTVCREGHIKIWMRPGVAES 518 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~--h~~~V~~l~fspd-~l~t~s~Dg~I~iW~~~~~~~~ 518 (548)
...+.+++... .-..+.+ |...|++++|+++ .|++++.|+.|++||+...+..
T Consensus 308 ~~~~~~~~~~l------------------------~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 308 MEHFLPIEKGL------------------------EELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp GGGGSCBCSSG------------------------GGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred cceeccccccc------------------------ccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccc
Confidence 44444443111 0001234 8889999999965 4999999999999998876522
Q ss_pred c--cC-------------------------------------CCCcEE--EecCC--CCceEeeeccccc
Q 008939 519 Q--SS-------------------------------------SSETVL--STSSK--DKPLLSSKVVTSS 545 (548)
Q Consensus 519 ~--~~-------------------------------------~~~~v~--~~s~d--~~~l~s~~~~g~~ 545 (548)
. .. |...|. +++++ +.+|++++..|.+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I 433 (437)
T 3gre_A 364 KAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLI 433 (437)
T ss_dssp EEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCE
T ss_pred eEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceE
Confidence 1 11 566666 55666 7789999888765
No 65
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.4e-34 Score=280.25 Aligned_cols=254 Identities=17% Similarity=0.247 Sum_probs=210.3
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.+|...|.+++|+|+|++|++++.| +|+|||+.....+.+..+..|...|.+++|+++. ++.+|++|+.||.|++|
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVMIW 82 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEETTTEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-cCCEEEEEcCCCEEEEE
Confidence 356899999999999999999999988 9999999865446788999999999999998641 16789999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
|++.... ..+.. . ..|...|++++|+|+ +. +|++++.|+.|++||++....
T Consensus 83 d~~~~~~---~~~~~-~------~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~---------------- 135 (297)
T 2pm7_B 83 KEENGRW---SQIAV-H------AVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGT---------------- 135 (297)
T ss_dssp EBSSSCB---CCCEE-E------CCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSC----------------
T ss_pred EcCCCce---EEEEE-e------ecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCc----------------
Confidence 9975210 11111 1 137889999999997 66 999999999999999975211
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCC-------------CCEEEEEECCCeEEEEeCCCCe----EEEeeeecCCce
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTD-------------GTYLATVGRDGYLRVFDYSKEQ----LICGGKSYYGAL 344 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-------------g~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~~~v 344 (548)
.....+..|...|.+++|+|+ +++|++++.|+.|++||+++++ ++..+.+|...|
T Consensus 136 --------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V 207 (297)
T 2pm7_B 136 --------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207 (297)
T ss_dssp --------BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred --------eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce
Confidence 112456778899999999996 5799999999999999998765 566788999999
Q ss_pred EEEEEccCC---CEEEEEeCCCeEEEEECCCce---eEEec--cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC
Q 008939 345 LCCAWSMDG---KYILTGGEDDLVQVWSMEDRK---VVAWG--EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416 (548)
Q Consensus 345 ~~l~~spdg---~~l~sgs~dg~I~vwd~~~~~---~~~~~--~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~ 416 (548)
.+++|+|++ ++|++++.|+.|+|||+++.. ....+ ..|...|.+++|+| +| .+|++++.
T Consensus 208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~g------~~las~~~ 274 (297)
T 2pm7_B 208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-------SG------NVLALSGG 274 (297)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-------SS------CCEEEEET
T ss_pred EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECC-------CC------CEEEEEcC
Confidence 999999995 799999999999999998742 22233 56889999999999 98 78999999
Q ss_pred CCeEEEEECCC
Q 008939 417 DTRLLLWDLEM 427 (548)
Q Consensus 417 Dg~i~lwd~~~ 427 (548)
|+.|+||+...
T Consensus 275 D~~v~lw~~~~ 285 (297)
T 2pm7_B 275 DNKVTLWKENL 285 (297)
T ss_dssp TSCEEEEEECT
T ss_pred CCcEEEEEECC
Confidence 99999999863
No 66
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=292.93 Aligned_cols=318 Identities=16% Similarity=0.191 Sum_probs=246.5
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecC-CCCCCceEEEEEcCCcEEEEEeeecccccccceeeeee-eccCCccc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQ-DAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHH-YNKDGSVN 229 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p-~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~-~~~~~~~~ 229 (548)
.++||+++... ....+..|...+.+++|+| + +.+|++|+.||.|++||+................ .......|
T Consensus 24 ~~~v~~~~~~~--~~~~~~~h~~~v~~~~~s~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 24 TRRVLGLELNK--DRDVERIHGGGINTLDIEPVE---GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHTEEECT--TEEECCCCSSCEEEEEECTTT---CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred cceeeccccCc--ceeeeeccCCcEEEEEEecCC---CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence 67788888744 7778888999999999999 7 7899999999999999998732111111000000 01112248
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...|++++|+|++..+|++++.||.|++||+... ..+..+. +...+.++.|++
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------------------------~~~~~~~-~~~~~~~~~~~~ 151 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL--------------------------QTADVFN-FEETVYSHHMSP 151 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT--------------------------EEEEEEE-CSSCEEEEEECS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC--------------------------ccceecc-CCCceeeeEeec
Confidence 8999999999954448999999999999999862 1222222 557899999998
Q ss_pred C---CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCCce-eEEec-----
Q 008939 310 D---GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDRK-VVAWG----- 379 (548)
Q Consensus 310 ~---g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~~~-~~~~~----- 379 (548)
. +.++++++.|+.|++||+++++.+..+..|...|.+++|+|+++ +|++++.|+.|++||++++. ++..+
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 231 (408)
T 4a11_B 152 VSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231 (408)
T ss_dssp SCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred CCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence 4 45999999999999999999999999999999999999999998 58999999999999998765 33333
Q ss_pred ----------cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCC---CCceec
Q 008939 380 ----------EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG---GSPTFS 446 (548)
Q Consensus 380 ----------~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~---~~~~~~ 446 (548)
..|...|.+++|+| ++ .+|++++.|+.|++||+++++....+...... ....+.
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~~~~~-------~~------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (408)
T 4a11_B 232 KKSQAVESANTAHNGKVNGLCFTS-------DG------LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT 298 (408)
T ss_dssp CSCCCTTTSSCSCSSCEEEEEECT-------TS------SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCE
T ss_pred ccceeeccccccccCceeEEEEcC-------CC------CEEEEecCCCeEEEEECCCCccceeccccccccccccceeE
Confidence 57899999999999 88 79999999999999999998875544321110 111110
Q ss_pred CCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCc
Q 008939 447 TGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAE 517 (548)
Q Consensus 447 ~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~ 517 (548)
........+..+..++.+++||+...+++..+.+|...|++++|+|++ |++++.||.|++|++...+.
T Consensus 299 ---~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 299 ---VSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp ---ECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred ---EecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 011223445566678899999999999999999999999999999974 99999999999999987653
No 67
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.2e-34 Score=278.41 Aligned_cols=258 Identities=16% Similarity=0.269 Sum_probs=204.9
Q ss_pred EEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC--CCc
Q 008939 167 KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--GDG 244 (548)
Q Consensus 167 ~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~--~~~ 244 (548)
..+..|...|.+++|+|+ +.+|++|+.|+.|++||+.... .+ ..... ..|...|++++|+|+ +.
T Consensus 3 ~~~~~h~~~V~~~~~s~~---g~~las~s~D~~v~iw~~~~~~---~~-~~~~l------~gH~~~V~~v~~s~~~~g~- 68 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYY---GKRMATCSSDKTIKIFEVEGET---HK-LIDTL------TGHEGPVWRVDWAHPKFGT- 68 (297)
T ss_dssp EECCSCSSCEEEEEECTT---SSEEEEEETTSCEEEEEBCSSC---BC-CCEEE------CCCSSCEEEEEECCGGGCS-
T ss_pred eeccCCcCceEEEEECCC---CCEEEEEeCCCEEEEEecCCCC---cE-EEEEE------ccccCCeEEEEecCCCcCC-
Confidence 345568889999999998 8899999999999999987411 11 11111 248999999999864 66
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC--CCEEEEEECCCe
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRDGY 322 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~~~dg~ 322 (548)
+|++|+.|++|++||++... ...+..+..|...|.+++|+|+ +.+|++++.|+.
T Consensus 69 ~l~s~s~D~~v~iWd~~~~~------------------------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~ 124 (297)
T 2pm7_B 69 ILASCSYDGKVMIWKEENGR------------------------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124 (297)
T ss_dssp EEEEEETTTEEEEEEBSSSC------------------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred EEEEEcCCCEEEEEEcCCCc------------------------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc
Confidence 99999999999999997521 1234556678899999999997 899999999999
Q ss_pred EEEEeCCCCe--EEEeeeecCCceEEEEEccC-------------CCEEEEEeCCCeEEEEECCCce----eEEeccCCC
Q 008939 323 LRVFDYSKEQ--LICGGKSYYGALLCCAWSMD-------------GKYILTGGEDDLVQVWSMEDRK----VVAWGEGHN 383 (548)
Q Consensus 323 v~vwd~~~~~--~~~~~~~~~~~v~~l~~spd-------------g~~l~sgs~dg~I~vwd~~~~~----~~~~~~~h~ 383 (548)
|++||++++. ....+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++ .+..+.+|.
T Consensus 125 v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~ 204 (297)
T 2pm7_B 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 204 (297)
T ss_dssp EEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred EEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC
Confidence 9999998763 23567789999999999997 5799999999999999998765 667889999
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeeccc
Q 008939 384 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTL 463 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~ 463 (548)
..|.+++|+| ++. ...+|++++.|+.|+|||++..........
T Consensus 205 ~~V~~v~~sp-------~~~---~~~~las~s~D~~v~iWd~~~~~~~~~~~~--------------------------- 247 (297)
T 2pm7_B 205 DWVRDVAWSP-------TVL---LRSYMASVSQDRTCIIWTQDNEQGPWKKTL--------------------------- 247 (297)
T ss_dssp SCEEEEEECC-------CCS---SSEEEEEEETTSCEEEEEESSTTSCCEEEE---------------------------
T ss_pred CceEEEEECC-------CCC---CceEEEEEECCCcEEEEEeCCCCCccceee---------------------------
Confidence 9999999999 630 016899999999999999876421000000
Q ss_pred CCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 464 QPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 464 ~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
.....|...|.+++|+|++ |++++.|+.|+||+...
T Consensus 248 ---------------~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 248 ---------------LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp ---------------SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred ---------------eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 0012467889999999974 99999999999999753
No 68
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.5e-33 Score=289.81 Aligned_cols=278 Identities=15% Similarity=0.271 Sum_probs=227.3
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe--cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecc
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH--FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQL 209 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~--~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~ 209 (548)
-...++|+++ .+|+++.+++|+|||+.++. .+..+. .+...|+|++|+|+ +.+|++|+.||.|++||+++
T Consensus 107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~--~~~~~~~~~~~~~V~sv~fspd---g~~lasgs~Dg~v~iWd~~~-- 178 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGD--ILQLLQMEQPGEYISSVAWIKE---GNYLAVGTSSAEVQLWDVQQ-- 178 (420)
T ss_dssp TCBCEEECTT-SEEEEEETTEEEEEETTTCC--EEEEEECCSTTCCEEEEEECTT---SSEEEEEETTSCEEEEETTT--
T ss_pred cceeEEECCC-CEEEEEeCCEEEEEECCCCC--EEEEEEecCCCCcEEEEEECCC---CCEEEEEECCCeEEEEEcCC--
Confidence 3457999975 58888887899999999865 555444 45678999999998 88999999999999999986
Q ss_pred cccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 210 QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
++.+.. . ..|...+.++.|++ . +|++|+.|+.+++||.... .
T Consensus 179 ---~~~~~~-~------~~h~~~v~~~s~~~--~-~l~sgs~d~~i~~~d~~~~-------------------------~ 220 (420)
T 4gga_A 179 ---QKRLRN-M------TSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVA-------------------------E 220 (420)
T ss_dssp ---TEEEEE-E------CCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSS-------------------------S
T ss_pred ---CcEEEE-E------eCCCCceEEEeeCC--C-EEEEEeCCCceeEeeeccc-------------------------c
Confidence 222221 1 13788899988864 4 8999999999999998752 3
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe----EEEeeeecCCceEEEEEccCCC-EEEE--EeCC
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ----LICGGKSYYGALLCCAWSMDGK-YILT--GGED 362 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~~~v~~l~~spdg~-~l~s--gs~d 362 (548)
..+..+..|...+..+.|+|+++++++++.|+.+++||..+++ .+.....|...|.+++|+|++. ++++ |+.|
T Consensus 221 ~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D 300 (420)
T 4gga_A 221 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 300 (420)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence 4567788899999999999999999999999999999998765 3455677889999999999765 5554 4579
Q ss_pred CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe--CCCeEEEEECCCCeEEeeeecCCCC
Q 008939 363 DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG--QDTRLLLWDLEMDEIVVPLRRGPLG 440 (548)
Q Consensus 363 g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~--~Dg~i~lwd~~~~~~~~~~~~~~~~ 440 (548)
+.|++||+++++++..+.. ...|.++.|+| ++ ..+++++ .|+.|+|||+.+++++..
T Consensus 301 ~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~-------~~------~~lv~~sg~~d~~I~iwd~~~~~~v~~------- 359 (420)
T 4gga_A 301 RHIRIWNVCSGACLSAVDA-HSQVCSILWSP-------HY------KELISGHGFAQNQLVIWKYPTMAKVAE------- 359 (420)
T ss_dssp CEEEEEETTTTEEEEEEEC-SSCEEEEEEET-------TT------TEEEEEECTTTCCEEEEETTTCCEEEE-------
T ss_pred CEEEEEeCCccccceeecc-ccceeeeeecC-------CC------CeEEEEEecCCCEEEEEECCCCcEEEE-------
Confidence 9999999999999988874 46788999999 77 3555543 799999999998776543
Q ss_pred CCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 441 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 441 ~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
+.+|.+.|++|+|+||+ |+||+.|++|+|||+....
T Consensus 360 ----------------------------------------l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 360 ----------------------------------------LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp ----------------------------------------ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred ----------------------------------------EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 45699999999999984 9999999999999986543
No 69
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-33 Score=288.94 Aligned_cols=279 Identities=15% Similarity=0.235 Sum_probs=229.8
Q ss_pred ceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 133 MTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
+..++|++ +.+++.+.++.|+|||+.++. .+..+.. +...+.+++|+|+ +.+|++|+.||.|++||+.+
T Consensus 96 ~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~--~~~~~~~~~~~~v~~v~~s~~---~~~l~~~~~dg~i~iwd~~~---- 165 (401)
T 4aez_A 96 LNLLDWSN-LNVVAVALERNVYVWNADSGS--VSALAETDESTYVASVKWSHD---GSFLSVGLGNGLVDIYDVES---- 165 (401)
T ss_dssp CBCEEECT-TSEEEEEETTEEEEEETTTCC--EEEEEECCTTCCEEEEEECTT---SSEEEEEETTSCEEEEETTT----
T ss_pred EEEEeecC-CCEEEEECCCeEEEeeCCCCc--EeEeeecCCCCCEEEEEECCC---CCEEEEECCCCeEEEEECcC----
Confidence 45577775 345555555599999999855 5555555 6788999999998 88999999999999999876
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNP 291 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (548)
.+.+.. . ..|...|.+++|++ . +|++++.||.|++||++.. ...
T Consensus 166 -~~~~~~-~------~~~~~~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~~-------------------------~~~ 209 (401)
T 4aez_A 166 -QTKLRT-M------AGHQARVGCLSWNR--H-VLSSGSRSGAIHHHDVRIA-------------------------NHQ 209 (401)
T ss_dssp -CCEEEE-E------CCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSS-------------------------SCE
T ss_pred -CeEEEE-e------cCCCCceEEEEECC--C-EEEEEcCCCCEEEEecccC-------------------------cce
Confidence 222211 1 13789999999953 4 8999999999999999852 244
Q ss_pred eeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEEe--CCCeEEEE
Q 008939 292 IARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGG--EDDLVQVW 368 (548)
Q Consensus 292 ~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs--~dg~I~vw 368 (548)
+..+..|.+.|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+|++. ++++++ .|+.|++|
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 677788999999999999999999999999999999999999999999999999999999775 566655 79999999
Q ss_pred ECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE--eCCCeEEEEECCCCeEEeeeecCCCCCCceec
Q 008939 369 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV--GQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFS 446 (548)
Q Consensus 369 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~--~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 446 (548)
|+++++++..+. |...|.+++|+| ++ ..|+++ +.|+.|++||+.+++.....
T Consensus 290 d~~~~~~~~~~~-~~~~v~~~~~s~-------~~------~~l~~~~g~~dg~i~v~~~~~~~~~~~~------------ 343 (401)
T 4aez_A 290 NAATGARVNTVD-AGSQVTSLIWSP-------HS------KEIMSTHGFPDNNLSIWSYSSSGLTKQV------------ 343 (401)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECS-------SS------SEEEEEECTTTCEEEEEEEETTEEEEEE------------
T ss_pred ECCCCCEEEEEe-CCCcEEEEEECC-------CC------CeEEEEeecCCCcEEEEecCCccceeEE------------
Confidence 999999988887 778899999999 88 577774 38999999999887654322
Q ss_pred CCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 447 TGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 447 ~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
.+.+|...|.+++|+|++ |++++.||.|++|++..++
T Consensus 344 ---------------------------------~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 344 ---------------------------------DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp ---------------------------------EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred ---------------------------------EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 235788999999999984 9999999999999998765
No 70
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-34 Score=296.59 Aligned_cols=314 Identities=13% Similarity=0.084 Sum_probs=245.5
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN 254 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~ 254 (548)
.+++++|+|+ +.+|++++.||.|++||+.... ....+ . ....+....|+|++. +|++++.||.
T Consensus 58 ~~~~~~~s~~---g~~l~~~~~d~~v~i~d~~~~~--~~~~~----------~-~~~~~~~~~~~~~~~-~l~~~~~dg~ 120 (420)
T 3vl1_A 58 AGKGNTFEKV---GSHLYKARLDGHDFLFNTIIRD--GSKML----------K-RADYTAVDTAKLQMR-RFILGTTEGD 120 (420)
T ss_dssp CCTTCEEEEE---ETTEEEEEETTEEEEEECCSEE--TTTTS----------C-SCCEEEEEEECSSSC-EEEEEETTSC
T ss_pred cccceeeeec---CCeEEEEEcCCcEEEEEecccc--eeeEE----------e-cCCceEEEEEecCCC-EEEEEECCCC
Confidence 3557899999 8889999999999999987621 11111 0 123445557889988 9999999999
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI 334 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~ 334 (548)
|++||+... ..+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+
T Consensus 121 i~iwd~~~~--------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 174 (420)
T 3vl1_A 121 IKVLDSNFN--------------------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 174 (420)
T ss_dssp EEEECTTSC--------------------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC
T ss_pred EEEEeCCCc--------------------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc
Confidence 999998752 234455678899999999999999999999999999999999999
Q ss_pred EeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC---CCCCeEEEEEecCCCC--------------
Q 008939 335 CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG---HNSWVSGVAFDSYWSQ-------------- 397 (548)
Q Consensus 335 ~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~---h~~~V~~v~~~p~~~~-------------- 397 (548)
..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.. |...|.+++|.|.-..
T Consensus 175 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 99999999999999999999999999999999999999998888874 5566777766431000
Q ss_pred CCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC--CCCCCceecCCCCccccCCeeeecccCCCCceeecCCC
Q 008939 398 PNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG--PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL 475 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~ 475 (548)
-.++| .+|++++.|+.|++||+++++.+..+... ..+..+.|++++ ...+..+..++.+++||+...
T Consensus 255 ~s~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 255 FGTYG------KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN-----ANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp SSCTT------EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC-----TTEEEEEETTSEEEEEETTCT
T ss_pred EcCCC------CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC-----CCEEEEEeCCCeEEEEEcCCC
Confidence 01177 79999999999999999999888777542 446677777765 126788889999999999887
Q ss_pred C-ceEEeec-CCCCeeEEEEeCC-eEEEEECCCeEEEEeCCCCCc-----------cccCCCCcEE--EecCCCC---ce
Q 008939 476 S-PLVAHRV-HTEPLSGLIFTQE-SVLTVCREGHIKIWMRPGVAE-----------SQSSSSETVL--STSSKDK---PL 536 (548)
Q Consensus 476 ~-~~~~~~~-h~~~V~~l~fspd-~l~t~s~Dg~I~iW~~~~~~~-----------~~~~~~~~v~--~~s~d~~---~l 536 (548)
. ++..+.. |...|+.+.|.+. .|++++.|+.|++|++..... ....+...+. +++||++ .|
T Consensus 324 ~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l 403 (420)
T 3vl1_A 324 ECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEV 403 (420)
T ss_dssp TSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEE
T ss_pred cCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceE
Confidence 4 4777777 6788999987765 489999999999999876321 1123444443 7889999 44
Q ss_pred Eeeecc
Q 008939 537 LSSKVV 542 (548)
Q Consensus 537 ~s~~~~ 542 (548)
++.+..
T Consensus 404 ~a~g~~ 409 (420)
T 3vl1_A 404 LEVGKN 409 (420)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 444433
No 71
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.6e-33 Score=306.69 Aligned_cols=282 Identities=20% Similarity=0.244 Sum_probs=229.5
Q ss_pred EEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEE
Q 008939 167 KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAF 246 (548)
Q Consensus 167 ~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l 246 (548)
..+..|...|+|++|+|+. ..+|++|+.||.|++||+......... .... ...|...|++++|+|++. +|
T Consensus 376 ~~l~~H~~~V~~v~~~~~~--~~~l~s~s~D~~i~~W~~~~~~~~~~~-~~~~------~~~h~~~v~~v~~s~~g~-~l 445 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDN--ADIIVSASRDKSIILWKLTKDDKAYGV-AQRR------LTGHSHFVEDVVLSSDGQ-FA 445 (694)
T ss_dssp EEEECCSSCEEEEECCTTC--CSEEEEEETTSEEEEEECCCSTTCSCE-EEEE------EECCSSCEEEEEECTTSS-EE
T ss_pred hhcccCCceeEEEEecCCC--CCEEEEEeCCCcEEEEEccCCCccccc-ccce------ecCCCCcEEEEEECCCCC-EE
Confidence 4577899999999999873 468999999999999999762111111 1111 124899999999999999 99
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 008939 247 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVF 326 (548)
Q Consensus 247 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vw 326 (548)
++|+.||.|+|||+.+ ...+..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 446 ~sgs~Dg~v~vwd~~~--------------------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw 499 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAA--------------------------GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499 (694)
T ss_dssp EEEETTSEEEEEETTT--------------------------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEeCCCcEEEEECCC--------------------------CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 9999999999999976 23466788899999999999999999999999999999
Q ss_pred eCCCCeEEEe---eeecCCceEEEEEccCC--CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCC
Q 008939 327 DYSKEQLICG---GKSYYGALLCCAWSMDG--KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSD 401 (548)
Q Consensus 327 d~~~~~~~~~---~~~~~~~v~~l~~spdg--~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~d 401 (548)
|+........ ..+|...|.+++|+|++ ..|++++.|+.|++||+++++++..+.+|...|++++|+| +
T Consensus 500 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-------d 572 (694)
T 3dm0_A 500 NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-------D 572 (694)
T ss_dssp CTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-------T
T ss_pred ECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-------C
Confidence 9875543322 24688899999999987 5899999999999999999999999999999999999999 9
Q ss_pred CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEe
Q 008939 402 GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH 481 (548)
Q Consensus 402 g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~ 481 (548)
| .+|++++.|+.|++||+++++++..+.
T Consensus 573 g------~~l~sg~~Dg~i~iwd~~~~~~~~~~~---------------------------------------------- 600 (694)
T 3dm0_A 573 G------SLCASGGKDGVVLLWDLAEGKKLYSLE---------------------------------------------- 600 (694)
T ss_dssp S------SEEEEEETTSBCEEEETTTTEEEECCB----------------------------------------------
T ss_pred C------CEEEEEeCCCeEEEEECCCCceEEEec----------------------------------------------
Confidence 8 799999999999999999988764332
Q ss_pred ecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCcccc--C-------------------CCCcE--EEecCCCCceE
Q 008939 482 RVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAESQS--S-------------------SSETV--LSTSSKDKPLL 537 (548)
Q Consensus 482 ~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~~~~--~-------------------~~~~v--~~~s~d~~~l~ 537 (548)
+...|.+++|+|+. +++++.|+.|+|||+.+...... . +...+ ++++||+++|+
T Consensus 601 --~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~ 678 (694)
T 3dm0_A 601 --ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF 678 (694)
T ss_dssp --CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE
T ss_pred --CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE
Confidence 23568999999985 67777788899999987652110 0 00112 37899999999
Q ss_pred eeeccccc
Q 008939 538 SSKVVTSS 545 (548)
Q Consensus 538 s~~~~g~~ 545 (548)
++...|.+
T Consensus 679 sgs~Dg~i 686 (694)
T 3dm0_A 679 SGYTDGVI 686 (694)
T ss_dssp EEETTSEE
T ss_pred EEcCCCeE
Confidence 99888765
No 72
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.9e-32 Score=283.62 Aligned_cols=310 Identities=20% Similarity=0.266 Sum_probs=256.6
Q ss_pred CCCeEEEecCCCCc-eEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC
Q 008939 163 KDPIKSIHFSNSNP-VCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG 241 (548)
Q Consensus 163 ~~~i~~~~~~~~~~-~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~ 241 (548)
.+....+..|...+ .|+.++ +.+|++|+.||.|++||+.+ ++.+. .. ..|...|.+++|+
T Consensus 108 ~~~~~~l~~h~~~v~~~~~~~-----g~~l~sg~~dg~i~vwd~~~-----~~~~~-~~------~~h~~~v~~~~~~-- 168 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCLQFC-----GNRIVSGSDDNTLKVWSAVT-----GKCLR-TL------VGHTGGVWSSQMR-- 168 (445)
T ss_dssp CCCCEEEECSTTSCEEEEEEE-----TTEEEEEETTSCEEEEETTT-----CCEEE-EC------CCCSSCEEEEEEE--
T ss_pred cceeEEecccCCCcEEEEEEc-----CCEEEEEECCCcEEEEECCC-----CcEEE-EE------cCCCCCEEEEEec--
Confidence 34566777787764 565554 66899999999999999876 22221 11 2488999999998
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC
Q 008939 242 GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG 321 (548)
Q Consensus 242 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg 321 (548)
+. +|++++.||.|++||+.+ .+.+..+..|...|.+++|+ +++|++++.||
T Consensus 169 ~~-~l~s~~~dg~i~vwd~~~--------------------------~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg 219 (445)
T 2ovr_B 169 DN-IIISGSTDRTLKVWNAET--------------------------GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDA 219 (445)
T ss_dssp TT-EEEEEETTSCEEEEETTT--------------------------TEEEEEECCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred CC-EEEEEeCCCeEEEEECCc--------------------------CcEEEEECCCCCcEEEEEec--CCEEEEEeCCC
Confidence 34 899999999999999986 23466777889999999995 56899999999
Q ss_pred eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCC
Q 008939 322 YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSD 401 (548)
Q Consensus 322 ~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~d 401 (548)
.|++||+++++.+..+..|...|.+++| ++++|++|+.|+.|++||+++++++..+.+|...|.++.|+
T Consensus 220 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--------- 288 (445)
T 2ovr_B 220 TLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--------- 288 (445)
T ss_dssp EEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC---------
T ss_pred EEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEEC---------
Confidence 9999999999999999999999999999 78899999999999999999999999999999999999994
Q ss_pred CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEe
Q 008939 402 GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH 481 (548)
Q Consensus 402 g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~ 481 (548)
+ .++++++.|+.|++||+++++++..+..+. .....+..+ ...+..+..++.+++||+...+++..+
T Consensus 289 ~------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~------~~~l~~~~~dg~i~vwd~~~~~~~~~~ 355 (445)
T 2ovr_B 289 G------IHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK------DNILVSGNADSTVKIWDIKTGQCLQTL 355 (445)
T ss_dssp S------SEEEEEETTSCEEEEETTTCCEEEEECCCC-SCEEEEEEE------TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred C------CEEEEEeCCCeEEEEECCCCCEEEEEcCCc-ccEEEEEEe------CCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 3 589999999999999999999988876532 222222222 346788889999999999999999998
Q ss_pred ec---CCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCCccc-------cCCCCcEE--EecCCCCceEeeecccc
Q 008939 482 RV---HTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQ-------SSSSETVL--STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 482 ~~---h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~~~~-------~~~~~~v~--~~s~d~~~l~s~~~~g~ 544 (548)
.. |...|++++|+++.|++++.||.|++||+..++... ..+...+. +++|++.+|+++...|.
T Consensus 356 ~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 356 QGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp CSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred ccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 87 889999999999999999999999999998776321 24555565 78899999999988775
No 73
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.5e-33 Score=308.33 Aligned_cols=352 Identities=14% Similarity=0.136 Sum_probs=269.4
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
+.+|...|.+++|+|++.+|++++.+ .|+|||+.++. .+..+..|...+.+++|+|+ +.+|++++.||.|++||
T Consensus 51 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vw~ 125 (814)
T 3mkq_A 51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE--KVVDFEAHPDYIRSIAVHPT---KPYVLSGSDDLTVKLWN 125 (814)
T ss_dssp EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSS---SSEEEEEETTSEEEEEE
T ss_pred EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEecCCCCEEEEEEeCC---CCEEEEEcCCCEEEEEE
Confidence 34688999999999999999998887 99999999854 88888889999999999999 78899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEec-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
++.. ........ .|...|.+++|+| ++. .|++++.||.|++||+...
T Consensus 126 ~~~~-----~~~~~~~~------~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~-------------------- 173 (814)
T 3mkq_A 126 WENN-----WALEQTFE------GHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQS-------------------- 173 (814)
T ss_dssp GGGT-----SEEEEEEE------CCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCS--------------------
T ss_pred CCCC-----ceEEEEEc------CCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC--------------------
Confidence 8762 12222111 3788999999999 666 9999999999999999752
Q ss_pred CCCCCCCCeeEeeec-CCCeEEEEECC--CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe
Q 008939 284 PRYSKSNPIARWHIC-QGSINSIAFST--DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h-~~~v~~~~~sp--~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
.+...+..+ ...+.+++|+| ++.+|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++
T Consensus 174 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 174 ------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp ------SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred ------cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 122333333 38899999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec----
Q 008939 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR---- 436 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~---- 436 (548)
.|+.|++||+.+++.+..+..|...|.+++|+| +|. ..+++++.|+.+.+|++........+..
T Consensus 248 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 315 (814)
T 3mkq_A 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP-------TGR-----KNYIASGFDNGFTVLSLGNDEPTLSLDPVGKL 315 (814)
T ss_dssp TTSCEEEEETTTCSEEEEECCSSSSEEEEEECT-------TCG-----GGEEEEEETTEEEEEECSCCSCCEEECSSSEE
T ss_pred CCCeEEEEECCCCcEEEEeecCCCcEEEEEEcc-------CCC-----ceEEEEEeCCCEEEEEcCCCCceeEECCCCCE
Confidence 999999999999999999999999999999999 872 2345556678899999865432221110
Q ss_pred ----------------------------------------CCCCCCceecCCCCc--cccCC------------------
Q 008939 437 ----------------------------------------GPLGGSPTFSTGSQS--AHWDN------------------ 456 (548)
Q Consensus 437 ----------------------------------------~~~~~~~~~~~~~~~--~~~d~------------------ 456 (548)
...+..+.+++++.. ...+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~~~~i 395 (814)
T 3mkq_A 316 VWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKC 395 (814)
T ss_dssp EEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEEEEEC
T ss_pred EEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccCCCce
Confidence 012344555555530 00011
Q ss_pred ----------eeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC-----eEEEEECCCeEEEEeCCCCCcc-cc
Q 008939 457 ----------VCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-----SVLTVCREGHIKIWMRPGVAES-QS 520 (548)
Q Consensus 457 ----------~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd-----~l~t~s~Dg~I~iW~~~~~~~~-~~ 520 (548)
.+.++..++.+.+|+ .+.+|...|..+.|+|+ .|++++.|+.|++||+..+... ..
T Consensus 396 ~~~~~spdg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~ 467 (814)
T 3mkq_A 396 QDFVWGPDSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRI 467 (814)
T ss_dssp SEEEECTTSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEE
T ss_pred EEEEEeCCCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEE
Confidence 112222233333332 33467778888889997 4788899999999998766532 22
Q ss_pred CCCCcEEEecCCCCceEeee
Q 008939 521 SSSETVLSTSSKDKPLLSSK 540 (548)
Q Consensus 521 ~~~~~v~~~s~d~~~l~s~~ 540 (548)
.....-++|+||+++|+++.
T Consensus 468 ~~~~~~v~~s~dg~~la~~~ 487 (814)
T 3mkq_A 468 DVNAKDVIWSDNGELVMIVN 487 (814)
T ss_dssp SSCEEEEEECTTSSEEEEEE
T ss_pred ecCCCEEEEcCCCCEEEEEE
Confidence 22223568999999999883
No 74
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.9e-33 Score=286.12 Aligned_cols=286 Identities=16% Similarity=0.246 Sum_probs=233.1
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
.+|...|.++.| +++++++++.| .|++||+.++. .+..+..|...+.+++| + +.+|++|+.||.|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~--~---~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE--CKRILTGHTGSVLCLQY--D---ERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC--EEEEECCCSSCEEEEEC--C---SSEEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe--EEEEEcCCCCcEEEEEE--C---CCEEEEEcCCCeEEEEEC
Confidence 346667888877 78899998887 99999999854 88888889999999999 3 669999999999999999
Q ss_pred eecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
++. +.+. .. ..|...|.+++|++ . +|++++.||.|++||+.....
T Consensus 201 ~~~-----~~~~-~~------~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~~~-------------------- 245 (435)
T 1p22_A 201 NTG-----EMLN-TL------IHHCEAVLHLRFNN--G-MMVTCSKDRSIAVWDMASPTD-------------------- 245 (435)
T ss_dssp SSC-----CEEE-EE------CCCCSCEEEEECCT--T-EEEEEETTSCEEEEECSSSSC--------------------
T ss_pred CCC-----cEEE-EE------cCCCCcEEEEEEcC--C-EEEEeeCCCcEEEEeCCCCCC--------------------
Confidence 862 2221 11 13788999999974 3 899999999999999986321
Q ss_pred CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeE
Q 008939 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I 365 (548)
......+..|...|.+++| ++++|++++.||.|++||+++++.+..+..|...|.+++|+ +++|++|+.|+.|
T Consensus 246 ---~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i 318 (435)
T 1p22_A 246 ---ITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTI 318 (435)
T ss_dssp ---CEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred ---ceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeE
Confidence 1122556778899999999 78899999999999999999999999999999999999994 6799999999999
Q ss_pred EEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCcee
Q 008939 366 QVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTF 445 (548)
Q Consensus 366 ~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~ 445 (548)
++||+++++++..+.+|...|.+++|++ .+|++++.||.|++||+++++....
T Consensus 319 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~---------------~~l~sg~~dg~i~vwd~~~~~~~~~------------ 371 (435)
T 1p22_A 319 RLWDIECGACLRVLEGHEELVRCIRFDN---------------KRIVSGAYDGKIKVWDLVAALDPRA------------ 371 (435)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEECCS---------------SEEEEEETTSCEEEEEHHHHTSTTS------------
T ss_pred EEEECCCCCEEEEEeCCcCcEEEEEecC---------------CEEEEEeCCCcEEEEECCCCCCccc------------
Confidence 9999999999999999999999999943 5899999999999999875431100
Q ss_pred cCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCC
Q 008939 446 STGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 446 ~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~ 516 (548)
.....++..+.+|...|++++|.+..|++++.||.|++||+....
T Consensus 372 --------------------------~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 372 --------------------------PAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp --------------------------CTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred --------------------------cccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence 001113456678999999999977789999999999999987754
No 75
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.5e-33 Score=281.10 Aligned_cols=293 Identities=14% Similarity=0.170 Sum_probs=232.0
Q ss_pred cCCCCceEEEecCCCCC-CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC----CCcE
Q 008939 171 FSNSNPVCHAFDQDAKD-GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG----GDGA 245 (548)
Q Consensus 171 ~~~~~~~~~~~~p~~~~-~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~----~~~~ 245 (548)
.|...|.+++|+|+.++ ...+++++.++.|++||+... +.+.....+. ...|...|++++|+|+ +. +
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~-----~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~-~ 87 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ-----GEIRLLQSYV--DADADENFYTCAWTYDSNTSHP-L 87 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG-----GCEEEEEEEE--CSCTTCCEEEEEEEECTTTCCE-E
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC-----cEEEeeeecc--ccCCCCcEEEEEeccCCCCCCC-E
Confidence 57889999999996332 456788888889999999862 2221111111 1126788999999999 45 8
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLR 324 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~ 324 (548)
|++++.||.|++||+.+ ...+..+..|...|.+++|+| ++++|++++.||.|+
T Consensus 88 l~~~~~dg~i~v~d~~~--------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~ 141 (366)
T 3k26_A 88 LAVAGSRGIIRIINPIT--------------------------MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 141 (366)
T ss_dssp EEEEETTCEEEEECTTT--------------------------CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred EEEecCCCEEEEEEchh--------------------------ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEE
Confidence 99999999999999886 245677788999999999999 999999999999999
Q ss_pred EEeCCCCeEEEee---eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc---------------------
Q 008939 325 VFDYSKEQLICGG---KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE--------------------- 380 (548)
Q Consensus 325 vwd~~~~~~~~~~---~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~--------------------- 380 (548)
+||+++++.+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus 142 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (366)
T 3k26_A 142 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF 221 (366)
T ss_dssp EEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred EEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeecc
Confidence 9999999988887 6799999999999999999999999999999999876554433
Q ss_pred -------CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccc
Q 008939 381 -------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAH 453 (548)
Q Consensus 381 -------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (548)
+|...|.+++|++ .+|++++.|+.|++||+++.+.......
T Consensus 222 ~~~~~~~~~~~~v~~~~~~~---------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~----------------- 269 (366)
T 3k26_A 222 PDFSTRDIHRNYVDCVRWLG---------------DLILSKSCENAIVCWKPGKMEDDIDKIK----------------- 269 (366)
T ss_dssp CSEEECSSCSSCCCEEEEET---------------TEEEEECSSSEEEEEEESSTTCCGGGCC-----------------
T ss_pred CccccccCCcceEEEEEEcC---------------CEEEEEecCCEEEEEeCCCccccccccc-----------------
Confidence 3999999999975 4899999999999999987654211100
Q ss_pred cCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--e--EEEEECCCeEEEEeCCCCCcc------ccCC-
Q 008939 454 WDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--S--VLTVCREGHIKIWMRPGVAES------QSSS- 522 (548)
Q Consensus 454 ~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~--l~t~s~Dg~I~iW~~~~~~~~------~~~~- 522 (548)
........+..+..|...|++++|+|+ . |++++.||.|++||+...... ...|
T Consensus 270 ----------------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 333 (366)
T 3k26_A 270 ----------------PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333 (366)
T ss_dssp ----------------TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred ----------------cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence 000111345667789999999999987 4 999999999999999876532 2233
Q ss_pred -CCcEE--EecCCCCceEeeeccccc
Q 008939 523 -SETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 523 -~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
...+. +++|++++|+++...|.+
T Consensus 334 ~~~~v~~~~~s~~~~~l~s~~~dg~i 359 (366)
T 3k26_A 334 CGAAIRQTSFSRDSSILIAVCDDASI 359 (366)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cCCceEEEEeCCCCCeEEEEeCCCEE
Confidence 46665 889999999999888765
No 76
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.8e-32 Score=267.34 Aligned_cols=274 Identities=15% Similarity=0.247 Sum_probs=221.5
Q ss_pred eeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe--cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 134 TNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH--FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~--~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
..++|++++ +|+++.+++|+|||+++++ .+..+. .|...|.+++|+|+ +.+|++|+.||.|++||+++
T Consensus 29 ~~l~WS~~~-~lAvg~D~tV~iWd~~tg~--~~~~~~~~~~~~~V~~v~~~~~---~~~l~sgs~Dg~v~iw~~~~---- 98 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVALDNSVYLWSASSGD--ILQLLQMEQPGEYISSVAWIKE---GNYLAVGTSSAEVQLWDVQQ---- 98 (318)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEETTTCC--EEEEEECCSTTCCEEEEEECTT---SSEEEEEETTSEEEEEETTT----
T ss_pred eEEEECCCC-EEEEEeCCEEEEEECCCCC--EEEEEEecCCCCeEEEEEECCC---CCEEEEEECCCcEEEeecCC----
Confidence 468999886 7888877799999999865 666555 45667999999999 88999999999999999986
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNP 291 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (548)
++.+. ... .|...+.++.+. +. ++++++.++.+++|+.... ...
T Consensus 99 -~~~~~-~~~------~h~~~~~~~~~~--~~-~l~s~~~~~~~~~~~~~~~-------------------------~~~ 142 (318)
T 4ggc_A 99 -QKRLR-NMT------SHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVA-------------------------EHH 142 (318)
T ss_dssp -TEEEE-EEE------CCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSS-------------------------SCE
T ss_pred -ceeEE-Eec------CccceEEEeecC--CC-EEEEEecCCceEeeecCCC-------------------------cee
Confidence 22222 111 367777766554 45 8999999999999998752 345
Q ss_pred eeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE----EEeeeecCCceEEEEEccCCCE---EEEEeCCCe
Q 008939 292 IARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL----ICGGKSYYGALLCCAWSMDGKY---ILTGGEDDL 364 (548)
Q Consensus 292 ~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~----~~~~~~~~~~v~~l~~spdg~~---l~sgs~dg~ 364 (548)
+..+..|...+..+.|++++++|++++.|+.|++||+++++. ......+.+.|.+++++|++.. +++++.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 222 (318)
T 4ggc_A 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 222 (318)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE
T ss_pred EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE
Confidence 667788999999999999999999999999999999987653 3445567889999999998763 346678899
Q ss_pred EEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEE--EeCCCeEEEEECCCCeEEeeeecCCCCCC
Q 008939 365 VQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS--VGQDTRLLLWDLEMDEIVVPLRRGPLGGS 442 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s--~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~ 442 (548)
|++||.+......... +...+..+.|+| ++ ..+++ ++.|+.|++||+++++++..
T Consensus 223 i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-------~~------~~~~~~sg~~d~~i~iwd~~~~~~~~~--------- 279 (318)
T 4ggc_A 223 IRIWNVCSGACLSAVD-AHSQVCSILWSP-------HY------KELISGHGFAQNQLVIWKYPTMAKVAE--------- 279 (318)
T ss_dssp EEEEETTTCCEEEEEE-CSSCEEEEEEET-------TT------TEEEEEECTTTCCEEEEETTTCCEEEE---------
T ss_pred EEEEeccccccccccc-ceeeeeeeeecc-------cc------cceEEEEEcCCCEEEEEECCCCcEEEE---------
Confidence 9999999887776655 778899999999 66 34443 44799999999998876543
Q ss_pred ceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 443 PTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 443 ~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
+.+|.+.|++|+|+|++ |+|++.||+|+|||+..
T Consensus 280 --------------------------------------l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 280 --------------------------------------LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp --------------------------------------ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred --------------------------------------EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 44699999999999984 99999999999999864
No 77
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.9e-32 Score=275.70 Aligned_cols=279 Identities=18% Similarity=0.230 Sum_probs=225.7
Q ss_pred EecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEE
Q 008939 169 IHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV 248 (548)
Q Consensus 169 ~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s 248 (548)
+.++...+.+++|+|+ +.+|++++.+|.|++||+..... ....... .|...|++++|+|++. +|++
T Consensus 4 ~~~~~~~i~~~~~s~~---~~~l~~~~~d~~v~i~~~~~~~~----~~~~~~~------~h~~~v~~~~~~~~~~-~l~~ 69 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKD---RTQIAICPNNHEVHIYEKSGNKW----VQVHELK------EHNGQVTGVDWAPDSN-RIVT 69 (372)
T ss_dssp EESCSSCCCEEEECTT---SSEEEEECSSSEEEEEEEETTEE----EEEEEEE------CCSSCEEEEEEETTTT-EEEE
T ss_pred ecccCCCeEEEEECCC---CCEEEEEeCCCEEEEEeCCCCcE----Eeeeeec------CCCCcccEEEEeCCCC-EEEE
Confidence 4567889999999998 88999999999999999986210 0111111 3788999999999998 9999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeC
Q 008939 249 GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDY 328 (548)
Q Consensus 249 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~ 328 (548)
++.||.|++||+.... ......+..|...|.+++|+|++++|++++.|+.|++||+
T Consensus 70 ~~~dg~i~vwd~~~~~------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~ 125 (372)
T 1k8k_C 70 CGTDRNAYVWTLKGRT------------------------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 125 (372)
T ss_dssp EETTSCEEEEEEETTE------------------------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred EcCCCeEEEEECCCCe------------------------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEe
Confidence 9999999999997521 0112233457789999999999999999999999999999
Q ss_pred CCCeE----EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEEC------------------CCceeEEeccCCCCCe
Q 008939 329 SKEQL----ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM------------------EDRKVVAWGEGHNSWV 386 (548)
Q Consensus 329 ~~~~~----~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~------------------~~~~~~~~~~~h~~~V 386 (548)
+.++. ......|...|.+++|+|++++|++++.|+.|++||+ ..++++..+.+|...|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 205 (372)
T 1k8k_C 126 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 205 (372)
T ss_dssp ETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred cCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE
Confidence 87752 2333567899999999999999999999999999995 4678888999999999
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
.+++|+| ++ .+|++++.|+.|++||+++++++..+
T Consensus 206 ~~~~~~~-------~~------~~l~~~~~d~~i~i~d~~~~~~~~~~-------------------------------- 240 (372)
T 1k8k_C 206 HGVCFSA-------NG------SRVAWVSHDSTVCLADADKKMAVATL-------------------------------- 240 (372)
T ss_dssp EEEEECS-------SS------SEEEEEETTTEEEEEEGGGTTEEEEE--------------------------------
T ss_pred EEEEECC-------CC------CEEEEEeCCCEEEEEECCCCceeEEE--------------------------------
Confidence 9999999 88 69999999999999999987765443
Q ss_pred CceeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCC--CC---------------------------
Q 008939 467 PSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPG--VA--------------------------- 516 (548)
Q Consensus 467 ~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~--~~--------------------------- 516 (548)
..|..+|++++|+|+. +++++.|+.|++|++.. +.
T Consensus 241 ---------------~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (372)
T 1k8k_C 241 ---------------ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 305 (372)
T ss_dssp ---------------ECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHC
T ss_pred ---------------ccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhc
Confidence 3577889999999974 55556999999999876 31
Q ss_pred -------------cc-ccCCCCcEEEe--c-CCC---CceEeeeccccc
Q 008939 517 -------------ES-QSSSSETVLST--S-SKD---KPLLSSKVVTSS 545 (548)
Q Consensus 517 -------------~~-~~~~~~~v~~~--s-~d~---~~l~s~~~~g~~ 545 (548)
.. ...|...|.++ . +++ ++|+++...|.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i 354 (372)
T 1k8k_C 306 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 354 (372)
T ss_dssp CCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEE
T ss_pred ccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCce
Confidence 11 13677788744 3 776 899999888754
No 78
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-32 Score=270.75 Aligned_cols=276 Identities=16% Similarity=0.193 Sum_probs=230.2
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
...+..|...|++++|+|+ +.+|++++.||.|++||+.+ ++.+.. . ..|...|++++|+|++. +
T Consensus 25 ~~~l~~h~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~-----~~~~~~-~------~~h~~~v~~~~~~~~~~-~ 88 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKE---GDLLFSCSKDSSASVWYSLN-----GERLGT-L------DGHTGTIWSIDVDCFTK-Y 88 (369)
T ss_dssp EEEEECCSSCEEEEEECTT---SCEEEEEESSSCEEEEETTT-----CCEEEE-E------CCCSSCEEEEEECTTSS-E
T ss_pred cEEEEEeeceEEEEEEcCC---CCEEEEEeCCCEEEEEeCCC-----chhhhh-h------hhcCCcEEEEEEcCCCC-E
Confidence 4456778899999999998 88999999999999999876 222221 1 13789999999999998 9
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-----
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD----- 320 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d----- 320 (548)
|++++.||.|++||+.+. ..+..+. |...|.+++|+|++++|++++.+
T Consensus 89 l~s~~~dg~i~iwd~~~~--------------------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 141 (369)
T 3zwl_B 89 CVTGSADYSIKLWDVSNG--------------------------QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNP 141 (369)
T ss_dssp EEEEETTTEEEEEETTTC--------------------------CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBC
T ss_pred EEEEeCCCeEEEEECCCC--------------------------cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCC
Confidence 999999999999999862 2344444 67899999999999999999999
Q ss_pred CeEEEEeCCCCe-----------EEEeeeecCC--ceEEEEEccCCCEEEEEeCCCeEEEEECCC-ceeEEeccCCCCCe
Q 008939 321 GYLRVFDYSKEQ-----------LICGGKSYYG--ALLCCAWSMDGKYILTGGEDDLVQVWSMED-RKVVAWGEGHNSWV 386 (548)
Q Consensus 321 g~v~vwd~~~~~-----------~~~~~~~~~~--~v~~l~~spdg~~l~sgs~dg~I~vwd~~~-~~~~~~~~~h~~~V 386 (548)
+.|++||+.... .+..+..|.. .+.+++|+|++++|++++.|+.|++||+++ .+.+..+..|...|
T Consensus 142 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 221 (369)
T 3zwl_B 142 GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI 221 (369)
T ss_dssp CEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCE
T ss_pred CEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCce
Confidence 999999997553 2334455655 899999999999999999999999999999 78888999999999
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
.+++|+| ++ .+|++++.|+.|++||+++++.+..+.
T Consensus 222 ~~~~~~~-------~~------~~l~~~~~d~~i~v~d~~~~~~~~~~~------------------------------- 257 (369)
T 3zwl_B 222 SDMQFSP-------DL------TYFITSSRDTNSFLVDVSTLQVLKKYE------------------------------- 257 (369)
T ss_dssp EEEEECT-------TS------SEEEEEETTSEEEEEETTTCCEEEEEE-------------------------------
T ss_pred eEEEECC-------CC------CEEEEecCCceEEEEECCCCceeeeec-------------------------------
Confidence 9999999 88 789999999999999999887665443
Q ss_pred CceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCC--------------eEEEEeCCCCCcc--ccCCCCcEE-
Q 008939 467 PSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREG--------------HIKIWMRPGVAES--QSSSSETVL- 527 (548)
Q Consensus 467 ~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg--------------~I~iW~~~~~~~~--~~~~~~~v~- 527 (548)
+...+..++|+|+ .+++++.++ .|++||+...... ...|...+.
T Consensus 258 -----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~ 320 (369)
T 3zwl_B 258 -----------------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNT 320 (369)
T ss_dssp -----------------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred -----------------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEE
Confidence 4567999999997 488888888 8999998876632 335667776
Q ss_pred -EecCCCCceEeeeccccc
Q 008939 528 -STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 528 -~~s~d~~~l~s~~~~g~~ 545 (548)
+++|++++|+++...|.+
T Consensus 321 ~~~s~~~~~l~s~~~dg~v 339 (369)
T 3zwl_B 321 VAISPQGTSYASGGEDGFI 339 (369)
T ss_dssp EEECTTSSEEEEEETTSEE
T ss_pred EEECCCCCEEEEEcCCCeE
Confidence 789999999999877654
No 79
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-31 Score=261.59 Aligned_cols=273 Identities=14% Similarity=0.149 Sum_probs=225.7
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+.+..+..|...+.+++| |+ +.+|++++.||.|++||+... +...... .|...|.+++|+|++.
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~---~~~l~s~~~dg~v~vw~~~~~-----~~~~~~~-------~~~~~v~~~~~~~~~~ 72 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VD---DSKVASVSRDGTVRLWSKDDQ-----WLGTVVY-------TGQGFLNSVCYDSEKE 72 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EE---TTEEEEEETTSEEEEEEESSS-----EEEEEEE-------ECSSCEEEEEEETTTT
T ss_pred HHHHHhhCCCCCcEEEEe-cC---CCEEEEEEcCCcEEEEECCCC-----EEEEEee-------cCCccEEEEEECCCCC
Confidence 467788889999999999 77 778999999999999999752 1111111 2788999999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
+|++++.||.|++|++.... ...++..+..|...|.+++| ++++|++++.|+.|
T Consensus 73 -~l~~~~~dg~i~~~~~~~~~-----------------------~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i 126 (313)
T 3odt_A 73 -LLLFGGKDTMINGVPLFATS-----------------------GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTA 126 (313)
T ss_dssp -EEEEEETTSCEEEEETTCCT-----------------------TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred -EEEEecCCCeEEEEEeeecC-----------------------CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCE
Confidence 99999999999999997521 12445667788899999999 57799999999999
Q ss_pred EEEeCCCCeEEEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCCceeEEeccC-CCCCeEEEEEecCCCCCCCC
Q 008939 324 RVFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWGEG-HNSWVSGVAFDSYWSQPNSD 401 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~d 401 (548)
++|| .++.+..+..|...+.+++|.| ++++|++++.|+.|++|| ..+.+..+.. |...|.+++|+| +
T Consensus 127 ~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~-------~ 195 (313)
T 3odt_A 127 KVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVD-------D 195 (313)
T ss_dssp EEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEE-------T
T ss_pred EEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcC-------C
Confidence 9999 6778888899999999999998 899999999999999999 4556666766 999999999999 8
Q ss_pred CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEe
Q 008939 402 GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH 481 (548)
Q Consensus 402 g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~ 481 (548)
+ . +++++.|+.|++||+++++++..+
T Consensus 196 ~------~-~~~~~~dg~i~i~d~~~~~~~~~~----------------------------------------------- 221 (313)
T 3odt_A 196 G------H-FISCSNDGLIKLVDMHTGDVLRTY----------------------------------------------- 221 (313)
T ss_dssp T------E-EEEEETTSEEEEEETTTCCEEEEE-----------------------------------------------
T ss_pred C------e-EEEccCCCeEEEEECCchhhhhhh-----------------------------------------------
Confidence 8 5 999999999999999987765433
Q ss_pred ecCCCCeeEEEEeCC-eEEEEECCCeEEEEeCCCCCcc--ccCCCCcEE--EecCCCCceEeeecccc
Q 008939 482 RVHTEPLSGLIFTQE-SVLTVCREGHIKIWMRPGVAES--QSSSSETVL--STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 482 ~~h~~~V~~l~fspd-~l~t~s~Dg~I~iW~~~~~~~~--~~~~~~~v~--~~s~d~~~l~s~~~~g~ 544 (548)
.+|...|++++|+|+ .|++++.||.|++||+...... ...+...+. +++|++++ +++...|.
T Consensus 222 ~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~dg~ 288 (313)
T 3odt_A 222 EGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDI-IVGSSDNL 288 (313)
T ss_dssp ECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCE-EEEETTSC
T ss_pred hcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCE-EEEeCCCc
Confidence 458899999999998 5999999999999999877632 235555665 78899984 45555544
No 80
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.5e-34 Score=281.43 Aligned_cols=256 Identities=16% Similarity=0.173 Sum_probs=202.5
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
....+|...|.+++|+|+|++|++++.| +|+|||+.++....+..+..|...|.+++|+|+. ++.+|++|+.|+.|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~-~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM-YGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG-GSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC-CCCEEEEEECCCEEEE
Confidence 3456899999999999999999999988 9999999875433567788899999999998631 1678999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
||+++.. ...... . ..|...|++++|+|+ +. +|++|+.|+.|++||++.....
T Consensus 86 Wd~~~~~---~~~~~~-~------~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~-------------- 140 (316)
T 3bg1_A 86 WREENGT---WEKSHE-H------AGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQW-------------- 140 (316)
T ss_dssp ECCSSSC---CCEEEE-E------CCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCE--------------
T ss_pred EECCCCc---ceEEEE-c------cCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCc--------------
Confidence 9987521 011111 1 137889999999998 55 8999999999999999753110
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCC-----------------CCEEEEEECCCeEEEEeCCCC---eEEEeeeec
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTD-----------------GTYLATVGRDGYLRVFDYSKE---QLICGGKSY 340 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-----------------g~~l~s~~~dg~v~vwd~~~~---~~~~~~~~~ 340 (548)
.....+..|...|.+++|+|+ +++|++++.|+.|++||++.. +++..+.+|
T Consensus 141 ---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h 211 (316)
T 3bg1_A 141 ---------EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH 211 (316)
T ss_dssp ---------EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred ---------ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence 011233456788999999987 478999999999999999755 467778899
Q ss_pred CCceEEEEEccCC----CEEEEEeCCCeEEEEECCCc---e-eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 341 YGALLCCAWSMDG----KYILTGGEDDLVQVWSMEDR---K-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 341 ~~~v~~l~~spdg----~~l~sgs~dg~I~vwd~~~~---~-~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
...|.+++|+|++ ++|++++.|+.|++||+++. + ....+..|...|.+++|+| +| .+|+
T Consensus 212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-------~g------~~la 278 (316)
T 3bg1_A 212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-------TA------NILA 278 (316)
T ss_dssp SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT-------TT------CCEE
T ss_pred CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC-------CC------CEEE
Confidence 9999999999987 78999999999999999862 1 2234556899999999999 98 7899
Q ss_pred EEeCCCeEEEEECCC
Q 008939 413 SVGQDTRLLLWDLEM 427 (548)
Q Consensus 413 s~~~Dg~i~lwd~~~ 427 (548)
+++.|+.|+||+...
T Consensus 279 s~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 279 VSGGDNKVTLWKESV 293 (316)
T ss_dssp EEESSSCEEEEEECT
T ss_pred EEcCCCeEEEEEECC
Confidence 999999999999863
No 81
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.1e-32 Score=273.68 Aligned_cols=309 Identities=13% Similarity=0.167 Sum_probs=220.1
Q ss_pred EEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec--CCCcE
Q 008939 168 SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP--GGDGA 245 (548)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p--~~~~~ 245 (548)
.+..|...|++++|+|+ +.+|++|+.||.|++||+..... ........ ..|...|++++|+| ++. +
T Consensus 6 ~~~gH~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~------~~~~~~v~~~~~~~~~d~~-~ 73 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFY---GRHVATCSSDQHIKVFKLDKDTS--NWELSDSW------RAHDSSIVAIDWASPEYGR-I 73 (351)
T ss_dssp EECCCSSCEEEEEECSS---SSEEEEEETTSEEEEEEECSSSC--CEEEEEEE------ECCSSCEEEEEECCGGGCS-E
T ss_pred cCcccccceeEEEEcCC---CCEEEEeeCCCeEEEEECCCCCC--cceeccee------ccCCCcEEEEEEcCCCCCC-E
Confidence 44568899999999998 88999999999999999986210 01111111 13889999999999 466 9
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC--CCEEEEEECCCeE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRDGYL 323 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~~~dg~v 323 (548)
|++++.||.|++||++....... . ....++..+..|...|.+++|+|+ +++|++++.|+.|
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~-~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 136 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECS-G----------------RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGIL 136 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTS-S----------------CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEE
T ss_pred EEEEcCCCeEEEEecCCCccccc-c----------------cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcE
Confidence 99999999999999986321100 0 011346677788999999999999 9999999999999
Q ss_pred EEEeCCCCeEEEeee-------------ecCCceEEEEEccC---CCEEEEEeCCCeEEEEECCCcee--EEeccCCCCC
Q 008939 324 RVFDYSKEQLICGGK-------------SYYGALLCCAWSMD---GKYILTGGEDDLVQVWSMEDRKV--VAWGEGHNSW 385 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~-------------~~~~~v~~l~~spd---g~~l~sgs~dg~I~vwd~~~~~~--~~~~~~h~~~ 385 (548)
++||+++++.+..+. .|...+.+++|+|+ +.+|++++.|+.+.+|+...++. +..+.+|...
T Consensus 137 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 216 (351)
T 3f3f_A 137 RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL 216 (351)
T ss_dssp EEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC
T ss_pred EEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc
Confidence 999998876543332 57788999999997 89999999999998888887764 7788899999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC-CCCceecCCCCccccCCeeeecccC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL-GGSPTFSTGSQSAHWDNVCPVGTLQ 464 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~g~~~ 464 (548)
|++++|+| ++. ....+|++++.|+.|++||++.+........... ........... ........+...
T Consensus 217 i~~~~~~p-------~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 285 (351)
T 3f3f_A 217 IRSISWAP-------SIG--RWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVD--MDAQGRSDSNTE 285 (351)
T ss_dssp EEEEEECC-------CSS--CSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred eeEEEECC-------CCC--CcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccc--cccccccccccc
Confidence 99999999 651 0014899999999999999987755433222100 00011111000 000000122233
Q ss_pred CCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 465 PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 465 ~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
....+|+.....++..+.+|...|++++|+|++ |++++.||.|+||++....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 286 EKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp -----CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred eeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 445566666677888899999999999999974 9999999999999998654
No 82
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=282.57 Aligned_cols=333 Identities=9% Similarity=0.071 Sum_probs=232.3
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCC---------CCeEEEecCC------------CCceEEEecCCC
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK---------DPIKSIHFSN------------SNPVCHAFDQDA 185 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~---------~~i~~~~~~~------------~~~~~~~~~p~~ 185 (548)
.+.+.|.+++|+|+|.+|++++.| .|+|||+..+.. +.+..+..|. ..|.+++|+|+.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467889999999999999999887 999999987431 1366777777 789999999982
Q ss_pred CCCceEEEEEcCCcEEEEEeeecccccc-cc---------------------------eeeeeeeccCCcccCcceEEEE
Q 008939 186 KDGHDLLIGLNSGDVYSVSLRQQLQDVG-KK---------------------------LVGAHHYNKDGSVNNSRCTSVT 237 (548)
Q Consensus 186 ~~~~~l~~g~~dg~I~iwdl~~~~~~~~-~~---------------------------~~~~~~~~~~~~~~~~~v~~l~ 237 (548)
. ...|++++.||.|++||+........ .. .........-...|...|++++
T Consensus 106 ~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 106 N-AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp S-SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred C-cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 1 16899999999999999986211000 00 0000000000134899999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC-CEEEE
Q 008939 238 WVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG-TYLAT 316 (548)
Q Consensus 238 ~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s 316 (548)
|+|++. +|++| .|+.|++||++..+.....+. .....+..|...|.+++|+|++ ++|++
T Consensus 185 ~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~s 244 (447)
T 3dw8_B 185 INSDYE-TYLSA-DDLRINLWHLEITDRSFNIVD------------------IKPANMEELTEVITAAEFHPNSCNTFVY 244 (447)
T ss_dssp ECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEE------------------CCCSSGGGCCCCEEEEEECSSCTTEEEE
T ss_pred EcCCCC-EEEEe-CCCeEEEEECCCCCceeeeee------------------cccccccccCcceEEEEECCCCCcEEEE
Confidence 999998 88888 799999999984211100000 0001245678999999999998 99999
Q ss_pred EECCCeEEEEeCCCCeE----EEeeeecCC------------ceEEEEEccCCCEEEEEeCCCeEEEEECCC-ceeEEec
Q 008939 317 VGRDGYLRVFDYSKEQL----ICGGKSYYG------------ALLCCAWSMDGKYILTGGEDDLVQVWSMED-RKVVAWG 379 (548)
Q Consensus 317 ~~~dg~v~vwd~~~~~~----~~~~~~~~~------------~v~~l~~spdg~~l~sgs~dg~I~vwd~~~-~~~~~~~ 379 (548)
++.||.|++||+++++. +..+..|.. .|.+++|+|++++|++++. +.|++||+++ ++++..+
T Consensus 245 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~ 323 (447)
T 3dw8_B 245 SSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY 323 (447)
T ss_dssp EETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE
T ss_pred EeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee
Confidence 99999999999998886 677777775 8999999999999999999 9999999997 8888888
Q ss_pred cCCCCC---------------eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCce
Q 008939 380 EGHNSW---------------VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT 444 (548)
Q Consensus 380 ~~h~~~---------------V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 444 (548)
.+|... +..++|+| ++ .+|++++.|+.|++||+.+++.+.......+.....
T Consensus 324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~-------~~------~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 390 (447)
T 3dw8_B 324 QVHEYLRSKLCSLYENDCIFDKFECCWNG-------SD------SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRT 390 (447)
T ss_dssp ESCGGGTTTHHHHHHTSGGGCCCCEEECT-------TS------SEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTC
T ss_pred eccccccccccccccccccccceEEEECC-------CC------CEEEEeccCCEEEEEEcCCCcceeeeeccccccccc
Confidence 888642 23499999 88 689999999999999999998764322211111111
Q ss_pred ecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 445 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 445 ~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
.... ..+..+.... ..........+...|..++|+|++ |++++.++ +++|.
T Consensus 391 ~~~~-------~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 391 VLKP-------RKVCASGKRK--------KDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp BCCC-------CCEECSSCCC--------TTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred ccCC-------ccccccCCcc--------cccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 1000 0011110000 000000111356789999999974 66666665 77775
No 83
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.5e-32 Score=279.70 Aligned_cols=311 Identities=18% Similarity=0.240 Sum_probs=250.0
Q ss_pred CeEEEecCCCCc-eEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 165 PIKSIHFSNSNP-VCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 165 ~i~~~~~~~~~~-~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
....+..|...+ .|+.|+ +.+|++|+.||.|++||+.+ ++.+. .. ..|...|++++|+|++
T Consensus 113 ~~~~l~~h~~~v~~~~~~~-----~~~l~sgs~dg~i~vwd~~~-----~~~~~-~~------~~h~~~V~~l~~~~~~- 174 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE-----DNYVITGADDKMIRVYDSIN-----KKFLL-QL------SGHDGGVWALKYAHGG- 174 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE-----TTEEEEEETTSCEEEEETTT-----TEEEE-EE------CCCSSCEEEEEECSTT-
T ss_pred ceEEEcCCCCCcEEEEEEC-----CCEEEEEcCCCcEEEEECCC-----CcEEE-EE------eCCCcCEEEEEEcCCC-
Confidence 445666676664 677775 45899999999999999876 22221 11 1489999999999887
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC--CCCCEEEEEECCC
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS--TDGTYLATVGRDG 321 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--p~g~~l~s~~~dg 321 (548)
+|++|+.||.|++||+++ ...+..+..|...|.+++|+ +++++|++++.|+
T Consensus 175 -~l~s~s~dg~i~vwd~~~--------------------------~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~ 227 (464)
T 3v7d_B 175 -ILVSGSTDRTVRVWDIKK--------------------------GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227 (464)
T ss_dssp -EEEEEETTSCEEEEETTT--------------------------TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTS
T ss_pred -EEEEEeCCCCEEEEECCC--------------------------CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCC
Confidence 799999999999999986 23466778899999999998 5789999999999
Q ss_pred eEEEEeCCCCeE-----------------------EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEe
Q 008939 322 YLRVFDYSKEQL-----------------------ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 322 ~v~vwd~~~~~~-----------------------~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~ 378 (548)
.|++||+++++. +..+.+|...+.++ ++++++|++++.|+.|++||+++++++..
T Consensus 228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 305 (464)
T 3v7d_B 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYI 305 (464)
T ss_dssp CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 999999987652 44567788888776 67889999999999999999999999999
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCCCceecCCCCccccCCe
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNV 457 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~ 457 (548)
+.+|...|.+++|+| ++ .+|++++.|+.|++||+++++++..+..+ ..+..+.++ +..
T Consensus 306 ~~~~~~~v~~~~~~~-------~~------~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--------~~~ 364 (464)
T 3v7d_B 306 LSGHTDRIYSTIYDH-------ER------KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--------DKF 364 (464)
T ss_dssp ECCCSSCEEEEEEET-------TT------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--------SSE
T ss_pred ecCCCCCEEEEEEcC-------CC------CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--------CCE
Confidence 999999999999999 88 68999999999999999999999888653 233344443 356
Q ss_pred eeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcc---ccCCCCcEEEecCC
Q 008939 458 CPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAES---QSSSSETVLSTSSK 532 (548)
Q Consensus 458 ~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~---~~~~~~~v~~~s~d 532 (548)
+..+..++.+++||+.......... |...+..++|+++. |++++ ||.|++||+.+++.. ...+...+.+++.+
T Consensus 365 l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 365 LVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred EEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 7888899999999999877665553 67778888999974 66666 999999999887743 34677788877767
Q ss_pred CCceEeeecc-ccc
Q 008939 533 DKPLLSSKVV-TSS 545 (548)
Q Consensus 533 ~~~l~s~~~~-g~~ 545 (548)
++.++++... |.+
T Consensus 443 ~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 443 GKTLVAAVEKDGQS 456 (464)
T ss_dssp TTEEEEEEEETTEE
T ss_pred CCEEEEEEEeCCeE
Confidence 7776666443 544
No 84
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=276.25 Aligned_cols=261 Identities=17% Similarity=0.257 Sum_probs=215.2
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.+|...|.+++|+|++++|++++.| .|+|||+.....+.+..+..|...+.+++|+++.. +.+|++++.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF-GTILASCSYDGKVLIW 84 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG-CSEEEEEETTSCEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCC-CCEEEEeccCCEEEEE
Confidence 346799999999999999999999877 99999998544457778888999999999987522 6789999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
|++.... ..+.. . ..|...|++++|+|+ +. +|++++.|+.|++||++...
T Consensus 85 d~~~~~~---~~~~~-~------~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~----------------- 136 (379)
T 3jrp_A 85 KEENGRW---SQIAV-H------AVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENG----------------- 136 (379)
T ss_dssp EEETTEE---EEEEE-E------CCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTS-----------------
T ss_pred EcCCCce---eEeee-e------cCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCC-----------------
Confidence 9986210 01111 1 137889999999999 77 99999999999999998631
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECC-------------CCCEEEEEECCCeEEEEeCCCCe----EEEeeeecCCce
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFST-------------DGTYLATVGRDGYLRVFDYSKEQ----LICGGKSYYGAL 344 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp-------------~g~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~~~v 344 (548)
......+..|...|.+++|+| ++.+|++++.|+.|++||+++++ ++..+..|...|
T Consensus 137 -------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 137 -------TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 209 (379)
T ss_dssp -------CCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred -------ceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE
Confidence 123445677889999999999 69999999999999999997653 456678899999
Q ss_pred EEEEEccC---CCEEEEEeCCCeEEEEECCCce-----eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC
Q 008939 345 LCCAWSMD---GKYILTGGEDDLVQVWSMEDRK-----VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416 (548)
Q Consensus 345 ~~l~~spd---g~~l~sgs~dg~I~vwd~~~~~-----~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~ 416 (548)
.+++|+|+ +++|++++.|+.|++||++++. .+.....|...|.+++|+| +| .+|++++.
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~g------~~l~~~~~ 276 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-------SG------NVLALSGG 276 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-------SS------CCEEEEES
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcC-------CC------CEEEEecC
Confidence 99999999 8999999999999999999863 2333345899999999999 98 78999999
Q ss_pred CCeEEEEECCCCeEEeee
Q 008939 417 DTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 417 Dg~i~lwd~~~~~~~~~~ 434 (548)
|+.|++||+........+
T Consensus 277 dg~i~iw~~~~~~~~~~~ 294 (379)
T 3jrp_A 277 DNKVTLWKENLEGKWEPA 294 (379)
T ss_dssp SSSEEEEEEEETTEEEEE
T ss_pred CCcEEEEeCCCCCccccc
Confidence 999999999865544333
No 85
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.2e-33 Score=277.06 Aligned_cols=254 Identities=16% Similarity=0.229 Sum_probs=200.1
Q ss_pred ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC--CCcEEE
Q 008939 170 HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--GDGAFV 247 (548)
Q Consensus 170 ~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~--~~~~l~ 247 (548)
..|...|.+++|+|+ +.+|++|+.|+.|++||++... ....... ..|...|++++|+|+ +. +|+
T Consensus 10 ~~H~~~V~~v~~s~~---g~~lasgs~D~~v~lwd~~~~~----~~~~~~l------~gH~~~V~~v~~~~~~~~~-~l~ 75 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYY---GTRLATCSSDRSVKIFDVRNGG----QILIADL------RGHEGPVWQVAWAHPMYGN-ILA 75 (316)
T ss_dssp ----CCEEEEEECGG---GCEEEEEETTTEEEEEEEETTE----EEEEEEE------ECCSSCEEEEEECCGGGSS-CEE
T ss_pred ccccCeEEEeeEcCC---CCEEEEEeCCCeEEEEEecCCC----cEEEEEE------cCCCccEEEEEeCCCCCCC-EEE
Confidence 458889999999998 8899999999999999997521 1111111 148999999999863 56 899
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC--CCEEEEEECCCeEEE
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRDGYLRV 325 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~~~dg~v~v 325 (548)
+|+.|++|++||++... ...+..+..|...|.+++|+|+ +.+|++++.|+.|++
T Consensus 76 s~s~D~~v~iWd~~~~~------------------------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l 131 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGT------------------------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131 (316)
T ss_dssp EEETTSCEEEECCSSSC------------------------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred EEECCCEEEEEECCCCc------------------------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence 99999999999987521 1234566778899999999997 789999999999999
Q ss_pred EeCCCCe---EEEeeeecCCceEEEEEccC-----------------CCEEEEEeCCCeEEEEECCCc---eeEEeccCC
Q 008939 326 FDYSKEQ---LICGGKSYYGALLCCAWSMD-----------------GKYILTGGEDDLVQVWSMEDR---KVVAWGEGH 382 (548)
Q Consensus 326 wd~~~~~---~~~~~~~~~~~v~~l~~spd-----------------g~~l~sgs~dg~I~vwd~~~~---~~~~~~~~h 382 (548)
||++.+. ....+.+|...|.+++|+|+ +++|++|+.|+.|++||++.. +++..+.+|
T Consensus 132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h 211 (316)
T 3bg1_A 132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH 211 (316)
T ss_dssp EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence 9998753 23456678899999999998 468999999999999999764 567788999
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecc
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 462 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~ 462 (548)
..+|.+++|+| ++. ....+|++++.|+.|+|||++......
T Consensus 212 ~~~V~~v~~sp-------~~~--~~~~~las~s~D~~v~iw~~~~~~~~~------------------------------ 252 (316)
T 3bg1_A 212 SDWVRDVAWAP-------SIG--LPTSTIASCSQDGRVFIWTCDDASSNT------------------------------ 252 (316)
T ss_dssp SSCEEEEECCC-------CSS--CSCCEEEEEETTCEEEEEECSSTTCCC------------------------------
T ss_pred CCceEEEEecC-------CCC--CCCceEEEEcCCCeEEEEEccCccccc------------------------------
Confidence 99999999999 641 011489999999999999987531000
Q ss_pred cCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 463 LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 463 ~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
.....+..|...|.+++|+|++ |++++.|+.|+||+..
T Consensus 253 -------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 253 -------------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp -------------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred -------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 0011234578899999999974 9999999999999975
No 86
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3e-32 Score=277.05 Aligned_cols=298 Identities=12% Similarity=0.103 Sum_probs=229.1
Q ss_pred EEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC----C
Q 008939 167 KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG----G 242 (548)
Q Consensus 167 ~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~----~ 242 (548)
..+..|...|++++|+|. +|++|+.||.|++||+................ .|...|++++|+|+ +
T Consensus 10 ~~~~~h~~~i~~~~~~~~-----~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~g 78 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACNS-----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF------VHKSGLHHVDVLQAIERDA 78 (397)
T ss_dssp EESSCSSSCEEEEEECSS-----EEEEEETTSEEEEEESBCCTTCCGGGGEEEEE------CCTTCEEEEEEEEEEETTT
T ss_pred hhhhhhhcCeEEEEecCC-----eEEEEcCCCEEEEEECCCcccccCCCcceEEe------cCCCcEEEEEEecccccCC
Confidence 344568889999999883 89999999999999998732100011111111 37899999999999 7
Q ss_pred ---CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec-----CCCeEEEEEC----CC
Q 008939 243 ---DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-----QGSINSIAFS----TD 310 (548)
Q Consensus 243 ---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~s----p~ 310 (548)
. +|++++.||.|++||+...... ....+..+..| ...|.+++|+ |+
T Consensus 79 ~~~~-~l~s~~~dg~i~iw~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 136 (397)
T 1sq9_A 79 FELC-LVATTSFSGDLLFYRITREDET---------------------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 136 (397)
T ss_dssp EEEE-EEEEEETTSCEEEEEEEECTTT---------------------CCEEEEEECCSCTTGGGSCEEEEEEECCC---
T ss_pred cccc-EEEEEcCCCCEEEEEccCCccc---------------------ccccceeecccccccCCCcEEEEEEeeccCCC
Confidence 7 9999999999999999863210 01115566667 4899999999 99
Q ss_pred CCE-EEEEECCCeEEEEeCCC------CeEEE-----eee-------ecCCceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 008939 311 GTY-LATVGRDGYLRVFDYSK------EQLIC-----GGK-------SYYGALLCCAWSMDGKYILTGGEDDLVQVWSME 371 (548)
Q Consensus 311 g~~-l~s~~~dg~v~vwd~~~------~~~~~-----~~~-------~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~ 371 (548)
+++ |++++.||.|++||+++ ++.+. .+. .|...|.+++|+|++ +|++++.|+.|++||++
T Consensus 137 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~ 215 (397)
T 1sq9_A 137 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS 215 (397)
T ss_dssp -CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT
T ss_pred CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECC
Confidence 999 99999999999999988 65555 563 488899999999999 99999999999999999
Q ss_pred CceeEEeccC---C---CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC---CeEEEEECCCCeEEeeeecCCCCCC
Q 008939 372 DRKVVAWGEG---H---NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD---TRLLLWDLEMDEIVVPLRRGPLGGS 442 (548)
Q Consensus 372 ~~~~~~~~~~---h---~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D---g~i~lwd~~~~~~~~~~~~~~~~~~ 442 (548)
+++.+..+.. | ...|.+++|+| ++ .+|++++.| +.|++||+++++++..+........
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~i~~i~~~~-------~~------~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 282 (397)
T 1sq9_A 216 TLRPLYNFESQHSMINNSNSIRSVKFSP-------QG------SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 282 (397)
T ss_dssp TTEEEEEEECCC---CCCCCEEEEEECS-------ST------TEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----
T ss_pred CCceeEEEeccccccccCCccceEEECC-------CC------CEEEEEecCCCCceEEEEECCCCcccceeccCccccc
Confidence 9999999998 9 99999999999 88 689999999 9999999999887766543110000
Q ss_pred ceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCc--c
Q 008939 443 PTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--S 518 (548)
Q Consensus 443 ~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~--~ 518 (548)
.......|...|.+++|+|+ .|++++.||.|++||+...+. .
T Consensus 283 ----------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 328 (397)
T 1sq9_A 283 ----------------------------------ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT 328 (397)
T ss_dssp -------------------------------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ----------------------------------ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEE
Confidence 00011238899999999997 499999999999999987652 1
Q ss_pred cc------CC---------------CCcEE--EecCCC----------CceEeeeccccc
Q 008939 519 QS------SS---------------SETVL--STSSKD----------KPLLSSKVVTSS 545 (548)
Q Consensus 519 ~~------~~---------------~~~v~--~~s~d~----------~~l~s~~~~g~~ 545 (548)
.. .| ...+. +++|++ ++|+++...|.+
T Consensus 329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i 388 (397)
T 1sq9_A 329 LNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI 388 (397)
T ss_dssp EECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred EecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcE
Confidence 12 34 66666 788998 789998877654
No 87
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=290.11 Aligned_cols=311 Identities=12% Similarity=0.048 Sum_probs=226.9
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
..-|.+++|+|||+++++++.| +|+ |..... .+ ..|+..+.+++|+|+ | .++.+.+|+.+.
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~--~l---~gh~~~v~~V~FsPd---g-------~~~~~~~~~~~~- 76 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK--DI---NCNSKNLFHVKEFPL---E-------FENKLDFELAQQ- 76 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS--CC---SSBGGGTEEEEEECC---C-------CCCTTTTSCCCS-
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc--ee---cCCCccEEEEEECCC---C-------CcceEEEEeCCC-
Confidence 3456789999999999999999 888 654432 33 578999999999998 3 455555554332
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
...... .+...|.+++|+|+|. +|++++.||.|++||...
T Consensus 77 -----~~~~~~--------~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~-------------------------- 116 (588)
T 2j04_A 77 -----NGLLNS--------QPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK-------------------------- 116 (588)
T ss_dssp -----SCSSTT--------SCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--------------------------
T ss_pred -----ceEeec--------CCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--------------------------
Confidence 111110 1477899999999999 999999999999999532
Q ss_pred CCCeeEeeecCC-----CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE-------EEee----eecCCceEEEEEccC
Q 008939 289 SNPIARWHICQG-----SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL-------ICGG----KSYYGALLCCAWSMD 352 (548)
Q Consensus 289 ~~~~~~~~~h~~-----~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~-------~~~~----~~~~~~v~~l~~spd 352 (548)
.+..+. |.. .|.+++|||||++|++|+.||+|++||+.++++ +.++ .+|...|.+++|+||
T Consensus 117 --~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd 193 (588)
T 2j04_A 117 --MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED 193 (588)
T ss_dssp --EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred --eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence 122233 333 599999999999999999999999999998752 5565 567789999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCcee---EEec-cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKV---VAWG-EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~---~~~~-~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
| |++++.|+.|++||+..++. ..++ .+|...|.+++|+ + ..|++++ |+.|++||+..+
T Consensus 194 g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--------g-------~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 194 V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--------D-------YKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--------T-------TEEEEEC-SSEEEEEETTTT
T ss_pred c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--------C-------CEEEEEe-CCeEEEEECCCC
Confidence 9 88889999999999988773 3556 4789999999996 2 3788887 699999999988
Q ss_pred eEE-eeeecCCCCCCcee--cCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCC
Q 008939 429 EIV-VPLRRGPLGGSPTF--STGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREG 505 (548)
Q Consensus 429 ~~~-~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg 505 (548)
+.. ....+...+..+.| ++++ ..+.++..++. ++|... .++|+||..++++.|+
T Consensus 256 ~~~~~~~gh~~~V~~va~~~s~d~------~~La~a~edG~-klw~~d----------------~~~~spd~~l~a~~d~ 312 (588)
T 2j04_A 256 SISSLKTGSLENFHIIPLNHEKES------TILLMSNKTSY-KVLLED----------------ELHVTADNIIAPYLEK 312 (588)
T ss_dssp EEEEEECSCCSCCCEEEETTCSSC------EEEEECSSCEE-EEEESS----------------SEEEECCCSSHHHHHH
T ss_pred eEEEEEcCCCceEEEEEeeeCCCC------CEEEEEcCCCC-EEEeec----------------cEEECCCceEEEEcCC
Confidence 873 33344345555666 5554 23344444555 566443 2557777655555577
Q ss_pred eEEEEeCCCCCccccCCCCcEE--EecCCCCceEeeecc
Q 008939 506 HIKIWMRPGVAESQSSSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 506 ~I~iW~~~~~~~~~~~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
++++|+..+.........-.|+ ++||||+.||++...
T Consensus 313 ~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~i 351 (588)
T 2j04_A 313 KFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYDM 351 (588)
T ss_dssp HHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEec
Confidence 8888877655533333333344 889999999988654
No 88
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=7.3e-32 Score=267.77 Aligned_cols=276 Identities=14% Similarity=0.154 Sum_probs=217.8
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCC--CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK--DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~--~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
..+|.+.|.+++|+|++.+|++++.| .|+|||+..... +.+..+..|...+.+++|+|.. ++.+|++++.||.|++
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE-YGRIIASASYDKTVKL 85 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG-GCSEEEEEETTSCEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC-CCCEEEEEcCCCeEEE
Confidence 45799999999999999999999887 999999986432 3566667789999999999931 1679999999999999
Q ss_pred EEeeeccccc-cc--ceeeeeeeccCCcccCcceEEEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 203 VSLRQQLQDV-GK--KLVGAHHYNKDGSVNNSRCTSVTWVPG--GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 203 wdl~~~~~~~-~~--~~~~~~~~~~~~~~~~~~v~~l~~~p~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
||++...... .+ +.... ...|...|.+++|+|+ +. +|++++.||.|++||++... ....+.......
T Consensus 86 wd~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~ 157 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCT------LNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPS-DLRSWTLTSEMK 157 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEE------ECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTT-CTTCCEEEEEEE
T ss_pred EecCCCcccccccCcceeee------ecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChH-Hhcccccccccc
Confidence 9998631110 00 11111 1137899999999999 77 99999999999999998633 222221100000
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECCC---CCEEEEEECCCeEEEEeCCCCeE--EEeeeecCCceEEEEEccC
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTD---GTYLATVGRDGYLRVFDYSKEQL--ICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~---g~~l~s~~~dg~v~vwd~~~~~~--~~~~~~~~~~v~~l~~spd 352 (548)
. .......|...+.+++|+|+ +.+|++++.|+.+.+|+...++. +..+.+|...|.+++|+|+
T Consensus 158 ~------------~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~ 225 (351)
T 3f3f_A 158 V------------LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225 (351)
T ss_dssp S------------CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCC
T ss_pred c------------cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCC
Confidence 0 00011245688999999997 89999999999998888887765 6677889999999999999
Q ss_pred C----CEEEEEeCCCeEEEEECCCc----------------------------------------------eeEEeccCC
Q 008939 353 G----KYILTGGEDDLVQVWSMEDR----------------------------------------------KVVAWGEGH 382 (548)
Q Consensus 353 g----~~l~sgs~dg~I~vwd~~~~----------------------------------------------~~~~~~~~h 382 (548)
+ ++|++|+.|+.|++||++++ +.+..+.+|
T Consensus 226 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 305 (351)
T 3f3f_A 226 IGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 305 (351)
T ss_dssp SSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT
T ss_pred CCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence 8 89999999999999999864 677788899
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
...|++++|+| ++ .+|++++.|+.|++||+.+++.+..+.
T Consensus 306 ~~~v~~~~~s~-------~~------~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 306 NGEVWSVSWNL-------TG------TILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp SSCEEEEEECS-------SS------CCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred cccEEEEEEcC-------CC------CEEEEecCCCcEEEEecCcCcchhhee
Confidence 99999999999 88 799999999999999999886655543
No 89
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.1e-32 Score=274.44 Aligned_cols=299 Identities=14% Similarity=0.093 Sum_probs=226.2
Q ss_pred EEEccCCCCCCeEEEecCCCCceEEEecCCCCCC-ceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcce
Q 008939 155 ISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDG-HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRC 233 (548)
Q Consensus 155 vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~-~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v 233 (548)
+|++.. ...+..+..|...+.+++|+|+ + .+|++|+.||.|++||+... +.. ... ....|...|
T Consensus 57 ~~~~~~--~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~-----~~~-~~~----~~~~h~~~v 121 (383)
T 3ei3_B 57 IRSLKS--YKLHRTASPFDRRVTSLEWHPT---HPTTVAVGSKGGDIILWDYDVQ-----NKT-SFI----QGMGPGDAI 121 (383)
T ss_dssp HHHHTT--CEEEEEECCCSSCEEEEEECSS---CTTEEEEEEBTSCEEEEETTST-----TCE-EEE----CCCSTTCBE
T ss_pred cccccc--cceEEeccCCCCCEEEEEECCC---CCCEEEEEcCCCeEEEEeCCCc-----ccc-eee----ecCCcCCce
Confidence 344444 3356677778899999999998 5 79999999999999999862 111 111 111378999
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee---ecCCCeEEEEECCC
Q 008939 234 TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH---ICQGSINSIAFSTD 310 (548)
Q Consensus 234 ~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~sp~ 310 (548)
.+++|+|++..+|++++.|+.|++||++.. .+..+. .|...|.+++|+|+
T Consensus 122 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---------------------------~~~~~~~~~~~~~~v~~~~~~~~ 174 (383)
T 3ei3_B 122 TGMKFNQFNTNQLFVSSIRGATTLRDFSGS---------------------------VIQVFAKTDSWDYWYCCVDVSVS 174 (383)
T ss_dssp EEEEEETTEEEEEEEEETTTEEEEEETTSC---------------------------EEEEEECCCCSSCCEEEEEEETT
T ss_pred eEEEeCCCCCCEEEEEeCCCEEEEEECCCC---------------------------ceEEEeccCCCCCCeEEEEECCC
Confidence 999999944339999999999999999741 122222 33478999999999
Q ss_pred CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCC----ceeEEeccCCCCC
Q 008939 311 GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMED----RKVVAWGEGHNSW 385 (548)
Q Consensus 311 g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~----~~~~~~~~~h~~~ 385 (548)
+++|++++.|+.|++||+ +++.+..+..|...|.+++|+|+++ +|++++.|+.|++||+++ +.++..+ +|...
T Consensus 175 ~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~ 252 (383)
T 3ei3_B 175 RQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKP 252 (383)
T ss_dssp TTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSC
T ss_pred CCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCc
Confidence 999999999999999999 5778888999999999999999999 999999999999999998 5666666 59999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQP 465 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~ 465 (548)
|.+++|+|. +| .+|++++.|+.|++||+++++++..+..+.....
T Consensus 253 v~~~~~s~~------~~------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----------------------- 297 (383)
T 3ei3_B 253 VNAAYFNPT------DS------TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF----------------------- 297 (383)
T ss_dssp EEEEEECTT------TS------CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC-----------------------
T ss_pred eEEEEEcCC------CC------CEEEEEcCCCcEEEEECCCCcccccccccccccc-----------------------
Confidence 999999872 55 6899999999999999998887665553111000
Q ss_pred CCceeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCccc--cC--CCC--cEEEecCCCCceEe
Q 008939 466 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAESQ--SS--SSE--TVLSTSSKDKPLLS 538 (548)
Q Consensus 466 ~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~~~--~~--~~~--~v~~~s~d~~~l~s 538 (548)
....++.........+..++|+|+. + +++.|+.|++||+..+.... .. +.. ..++++||+++|++
T Consensus 298 -------~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 298 -------QHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp -------TTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred -------ccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence 0000000011123456678888874 5 88999999999998766322 12 222 23389999999999
Q ss_pred ee
Q 008939 539 SK 540 (548)
Q Consensus 539 ~~ 540 (548)
+.
T Consensus 370 ~s 371 (383)
T 3ei3_B 370 GM 371 (383)
T ss_dssp EE
T ss_pred ec
Confidence 96
No 90
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=272.07 Aligned_cols=326 Identities=12% Similarity=0.122 Sum_probs=227.0
Q ss_pred cCCCCCCceeEEeCC-CCCEEEEecCC-eEEEEEccCCCCCCeEEE-----------ecCCCCceEEEecCCCCCCceEE
Q 008939 126 ASSSSTSMTNTNFDG-KGTYIIFNVGD-AIFISDLNSQDKDPIKSI-----------HFSNSNPVCHAFDQDAKDGHDLL 192 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~-~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~-----------~~~~~~~~~~~~~p~~~~~~~l~ 192 (548)
..+|...|.+++|+| ++.++++++.| .|+|||+.+......... ..+...+.+++|+|+ ++.+|+
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~ 116 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH--DTGMFT 116 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT--CTTCEE
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC--CCcEEE
Confidence 446999999999999 99999998877 999999998653332221 137889999999994 267899
Q ss_pred EEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc--EEEEEeCCCcEEEEEcCCCCCCCCCc
Q 008939 193 IGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG--AFVVGHADGNLYVYEKSKDGAGDSSF 270 (548)
Q Consensus 193 ~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~--~l~s~~~dg~v~vwd~~~~~~~~~~~ 270 (548)
+++.||.|++||++.. ....... +...+.++.|+|.+.. +|++++.||.|++||++.
T Consensus 117 s~~~d~~i~iwd~~~~------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-------- 175 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTL------QTADVFN-------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS-------- 175 (408)
T ss_dssp EEETTSEEEEEETTTT------EEEEEEE-------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS--------
T ss_pred EEeCCCeEEEeeCCCC------ccceecc-------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC--------
Confidence 9999999999998862 2222222 5778999999985432 899999999999999986
Q ss_pred ccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCe-EEEee-----------
Q 008939 271 PVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQ-LICGG----------- 337 (548)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~~-~~~~~----------- 337 (548)
...+..+..|...|.+++|+|+++ +|++++.||.|++||+++++ .+..+
T Consensus 176 ------------------~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 237 (408)
T 4a11_B 176 ------------------GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237 (408)
T ss_dssp ------------------SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCT
T ss_pred ------------------cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceee
Confidence 234566778889999999999988 58999999999999998765 33333
Q ss_pred ----eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCC-----CCeEEEEEecCCCCCCCCCCcccee
Q 008939 338 ----KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN-----SWVSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 338 ----~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~-----~~V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
..|...|.+++|+|++++|++++.|+.|++||+++++....+..+. ..+. +.+.. . .+
T Consensus 238 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~-~~------ 304 (408)
T 4a11_B 238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLK-FTVSC-----G-CS------ 304 (408)
T ss_dssp TTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCC-CEECC-----S-SS------
T ss_pred ccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccce-eEEec-----C-CC------
Confidence 5688899999999999999999999999999999987665544321 1111 11111 0 22
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP 487 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~ 487 (548)
..++.++.|+.|++||+.+++++..+..+ ..+..+.|++++ ..+.++..++.+++|++...+++.....+...
T Consensus 305 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 378 (408)
T 4a11_B 305 SEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF------QELYSGSRDCNILAWVPSLYEPVPDDDETTTK 378 (408)
T ss_dssp SCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT------TEEEEEETTSCEEEEEECC-------------
T ss_pred ceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC------CEEEEECCCCeEEEEeCCCCCccCCCCceEec
Confidence 35777788999999999999999988753 456778888875 56778889999999999998887665543322
Q ss_pred eeEEEEeC---CeEEEEECCCeEEEEeCCC
Q 008939 488 LSGLIFTQ---ESVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 488 V~~l~fsp---d~l~t~s~Dg~I~iW~~~~ 514 (548)
..+.+ +.+.+.+.|+.+++|+.+.
T Consensus 379 ---~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 379 ---SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ------------------------------
T ss_pred ---cccccccceeecccCccCceeecCCcc
Confidence 23344 2367888999999999764
No 91
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.2e-32 Score=278.05 Aligned_cols=290 Identities=15% Similarity=0.195 Sum_probs=227.4
Q ss_pred ceeEEeCCCCCEEEE-ecCC-eEEEEEccCCCC--CCeEEEecCCCCceEEEecC-CCCCCceEEEEEcCCcEEEEEeee
Q 008939 133 MTNTNFDGKGTYIIF-NVGD-AIFISDLNSQDK--DPIKSIHFSNSNPVCHAFDQ-DAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 133 v~~~~~~~~g~~l~~-~~~d-~v~vwd~~~~~~--~~i~~~~~~~~~~~~~~~~p-~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
...++++|+...+++ ++.+ .|+||++..... ..+..+..|...|.+++|+| + +.+|++|+.||.|++||+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~---~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHN---DNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTC---TTEEEEEETTSEEEEEECCT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCC---CCEEEEEeCCCeEEEEEccC
Confidence 346888888776665 3444 999999975321 35556777899999999999 6 78999999999999999986
Q ss_pred ccccc-c-cceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 208 QLQDV-G-KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 208 ~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
..... . +.+.. . ..|...|++++|+|++.++|++++.||.|++||++..
T Consensus 114 ~~~~~~~~~~~~~-~------~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~---------------------- 164 (402)
T 2aq5_A 114 GGLVLPLREPVIT-L------EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG---------------------- 164 (402)
T ss_dssp TCCSSCBCSCSEE-E------ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT----------------------
T ss_pred CCCccccCCceEE-e------cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC----------------------
Confidence 31100 0 11111 1 1388999999999998559999999999999999862
Q ss_pred CCCCCCeeEe--eecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee-eecCCc-eEEEEEccCCCEEEEE--
Q 008939 286 YSKSNPIARW--HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG-KSYYGA-LLCCAWSMDGKYILTG-- 359 (548)
Q Consensus 286 ~~~~~~~~~~--~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~-v~~l~~spdg~~l~sg-- 359 (548)
..+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..|.+. +.+++|+|++++|++|
T Consensus 165 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 240 (402)
T 2aq5_A 165 ----AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240 (402)
T ss_dssp ----EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC
T ss_pred ----CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc
Confidence 334555 568899999999999999999999999999999999998888 678775 8999999999999999
Q ss_pred -eCCCeEEEEECCCcee-EEecc-CCCCCeEEEEEecCCCCCCCCCCccceeEEEE-EEeCCCeEEEEECCCCeE-Eeee
Q 008939 360 -GEDDLVQVWSMEDRKV-VAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG-SVGQDTRLLLWDLEMDEI-VVPL 434 (548)
Q Consensus 360 -s~dg~I~vwd~~~~~~-~~~~~-~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~-s~~~Dg~i~lwd~~~~~~-~~~~ 434 (548)
+.|+.|++||+++++. +.... .|...|.+++|+| ++ .+|+ +++.|+.|++||+.+++. +..+
T Consensus 241 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-------~~------~~l~~~g~~dg~i~i~d~~~~~~~~~~l 307 (402)
T 2aq5_A 241 RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDP-------DT------NIVYLCGKGDSSIRYFEITSEAPFLHYL 307 (402)
T ss_dssp TTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEET-------TT------TEEEEEETTCSCEEEEEECSSTTCEEEE
T ss_pred CCCCceEEEEcCccccCCceEEeccCCCceeEEEEcC-------CC------CEEEEEEcCCCeEEEEEecCCCcceEee
Confidence 7999999999998654 32222 4788899999999 88 4564 566899999999987663 2222
Q ss_pred ecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCC
Q 008939 435 RRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~ 514 (548)
. .+ .|..+|.+++|+|++.+.++.|+.+++|++..
T Consensus 308 ~--------------------------------------------~~-~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 308 S--------------------------------------------MF-SSKESQRGMGYMPKRGLEVNKCEIARFYKLHE 342 (402)
T ss_dssp E--------------------------------------------EE-CCSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred c--------------------------------------------cc-ccCCcccceEEecccccceecceeEEEEEcCC
Confidence 1 12 25688999999998744456788999999876
Q ss_pred CC
Q 008939 515 VA 516 (548)
Q Consensus 515 ~~ 516 (548)
..
T Consensus 343 ~~ 344 (402)
T 2aq5_A 343 RK 344 (402)
T ss_dssp TE
T ss_pred Cc
Confidence 44
No 92
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-31 Score=269.79 Aligned_cols=256 Identities=17% Similarity=0.297 Sum_probs=209.0
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC--C
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--G 242 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~--~ 242 (548)
++..+..|...|.+++|+|+ +.+|++|+.||.|++||+.... .+ ..... ..|...|++++|+|+ +
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~---~~~l~~~~~dg~i~iw~~~~~~---~~-~~~~~------~~h~~~v~~~~~~~~~~~ 69 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYY---GKRLATCSSDKTIKIFEVEGET---HK-LIDTL------TGHEGPVWRVDWAHPKFG 69 (379)
T ss_dssp --CCEEECCCCEEEEEECSS---SSEEEEEETTSCEEEEEEETTE---EE-EEEEE------CCCSSCEEEEEECCGGGC
T ss_pred ccEEecCCcccEEEEEEcCC---CCEEEEEECCCcEEEEecCCCc---ce-eeeEe------cCCCCcEEEEEeCCCCCC
Confidence 45667789999999999998 8899999999999999997311 11 11111 138899999999977 6
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC--CCEEEEEECC
Q 008939 243 DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRD 320 (548)
Q Consensus 243 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~~~d 320 (548)
. +|++++.||.|++||+.... ...+..+..|...|.+++|+|+ +++|++++.|
T Consensus 70 ~-~l~s~~~dg~v~iwd~~~~~------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 70 T-ILASCSYDGKVLIWKEENGR------------------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp S-EEEEEETTSCEEEEEEETTE------------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred C-EEEEeccCCEEEEEEcCCCc------------------------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence 6 99999999999999998621 1245566778899999999998 9999999999
Q ss_pred CeEEEEeCCCCe--EEEeeeecCCceEEEEEcc-------------CCCEEEEEeCCCeEEEEECCCce----eEEeccC
Q 008939 321 GYLRVFDYSKEQ--LICGGKSYYGALLCCAWSM-------------DGKYILTGGEDDLVQVWSMEDRK----VVAWGEG 381 (548)
Q Consensus 321 g~v~vwd~~~~~--~~~~~~~~~~~v~~l~~sp-------------dg~~l~sgs~dg~I~vwd~~~~~----~~~~~~~ 381 (548)
+.|++||+++.. ....+..|...|.+++|+| ++++|++++.|+.|++||+++++ .+..+.+
T Consensus 125 ~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 204 (379)
T 3jrp_A 125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 204 (379)
T ss_dssp SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec
Confidence 999999998773 3445678999999999999 69999999999999999998753 5567889
Q ss_pred CCCCeEEEEEecCCCCCCCC---CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCee
Q 008939 382 HNSWVSGVAFDSYWSQPNSD---GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVC 458 (548)
Q Consensus 382 h~~~V~~v~~~p~~~~~~~d---g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 458 (548)
|...|.+++|+| + + .+|++++.|+.|++||++++.......
T Consensus 205 h~~~v~~~~~sp-------~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------- 248 (379)
T 3jrp_A 205 HSDWVRDVAWSP-------TVLLR------SYLASVSQDRTCIIWTQDNEQGPWKKT----------------------- 248 (379)
T ss_dssp CSSCEEEEEECC-------CCSSS------EEEEEEETTSCEEEEEESSTTSCCEEE-----------------------
T ss_pred ccCcEeEEEECC-------CCCCC------CeEEEEeCCCEEEEEeCCCCCccceee-----------------------
Confidence 999999999999 8 7 799999999999999998764211110
Q ss_pred eecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 459 PVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 459 ~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
+.....|...|++++|+|++ |++++.||.|++|++.
T Consensus 249 -------------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 249 -------------------LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp -------------------ESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred -------------------eeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 00112478899999999984 9999999999999976
No 93
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-32 Score=283.13 Aligned_cols=298 Identities=13% Similarity=0.103 Sum_probs=215.2
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
.......+...|+|++|+|.. +.+|++|+.||.|+|||+.... ..... ....|...|++|+|+|.+.+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~--~~~lasGs~dg~i~lWd~~~~~---~~~~~-------~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTH--PSTVAVGSKGGDIMLWNFGIKD---KPTFI-------KGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSC--TTCEEEEETTSCEEEECSSCCS---CCEEE-------CCCSSSCCCCEEEECSSCTT
T ss_pred ecccCCCCCCCEEEEEEeCCC--CCEEEEEeCCCEEEEEECCCCC---ceeEE-------EccCCCCCEEEEEEeCCCCC
Confidence 344555677889999999962 5689999999999999987621 11111 11248999999999995444
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
+|++++.||+|++||++... . ..+...+.+...+.+++|+|++++|++++.||.|+
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~-~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~ 234 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNI-L-----------------------RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVI 234 (435)
T ss_dssp EEEEECSSSCEEEEETTSCE-E-----------------------EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEE
T ss_pred EEEEEeCCCEEEEeeccCCc-e-----------------------eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEe
Confidence 99999999999999987410 0 00011112235678999999999999999999999
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCCceeEE---eccCCCCCeEEEEEecCCCCCCC
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDRKVVA---WGEGHNSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~~~~~ 400 (548)
+||++ ++.+..+.+|...|.+++|+|+++ +|++|+.|+.|+|||+++.+... ...+|...|++++|+|
T Consensus 235 ~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp------- 306 (435)
T 4e54_B 235 LLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP------- 306 (435)
T ss_dssp EEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-------
T ss_pred eeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-------
Confidence 99997 456677889999999999999986 78899999999999998876443 3357999999999999
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEE
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA 480 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~ 480 (548)
|| .+|++++.|+.|+|||+.++.+...+..+...... ....+..
T Consensus 307 dg------~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~ 350 (435)
T 4e54_B 307 DG------ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ------------------------------HLTPIKA 350 (435)
T ss_dssp TS------SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS------------------------------SSCCCBC
T ss_pred CC------CeeEEEcCCCEEEEEECCCCccceEEecccccccc------------------------------cceeEEE
Confidence 98 79999999999999999998877665432110000 0000001
Q ss_pred eecCCCCeeEEEEeCCe---EEEEECCCeEEEEeCCCCCccc---cCCCCcE---EEecCCCCceEeeecc
Q 008939 481 HRVHTEPLSGLIFTQES---VLTVCREGHIKIWMRPGVAESQ---SSSSETV---LSTSSKDKPLLSSKVV 542 (548)
Q Consensus 481 ~~~h~~~V~~l~fspd~---l~t~s~Dg~I~iW~~~~~~~~~---~~~~~~v---~~~s~d~~~l~s~~~~ 542 (548)
.......+..+.++++. ++++..++.|++||..++.... ..|...| .+|+||+++|++|...
T Consensus 351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~ 421 (435)
T 4e54_B 351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGY 421 (435)
T ss_dssp EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSS
T ss_pred EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCC
Confidence 11123344555566652 4444566789999998776332 2444444 3789999999998644
No 94
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.4e-31 Score=266.34 Aligned_cols=286 Identities=12% Similarity=0.094 Sum_probs=229.1
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCC-CCeEEEecCCCCceEEEecCCCCCCc-eEEEEEcCCcEEEE
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK-DPIKSIHFSNSNPVCHAFDQDAKDGH-DLLIGLNSGDVYSV 203 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~-~~i~~~~~~~~~~~~~~~~p~~~~~~-~l~~g~~dg~I~iw 203 (548)
.+|.+.|.+++|+|++.++++++.| .|+|||+..... .++..+..+...+.+++|+|+ +. +|++|+.||.|++|
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN---TDLQIYVGTVQGEILKV 84 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES---SSEEEEEEETTSCEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC---CCcEEEEEcCCCeEEEE
Confidence 4789999999999999999998877 999999986431 125555678889999999998 88 89999999999999
Q ss_pred Ee-eecccccccceeeeeeeccCCcc--cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 204 SL-RQQLQDVGKKLVGAHHYNKDGSV--NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 204 dl-~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
|+ ... ... . ... |...|++++|+| +. +|++++.|+.|++||++........
T Consensus 85 d~~~~~------~~~-~------~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~----------- 138 (342)
T 1yfq_A 85 DLIGSP------SFQ-A------LTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIA----------- 138 (342)
T ss_dssp CSSSSS------SEE-E------CBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEE-----------
T ss_pred EeccCC------ceE-e------ccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEccccccccccc-----------
Confidence 98 652 111 0 113 788999999999 76 9999999999999998741100000
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC-Ce--EEEeeeecCCceEEEEEcc-CCCEE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK-EQ--LICGGKSYYGALLCCAWSM-DGKYI 356 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-~~--~~~~~~~~~~~v~~l~~sp-dg~~l 356 (548)
....++..+. |...|.+++|+|++ |++++.|+.|++||+++ +. .......|...+.+++|+| ++++|
T Consensus 139 ------~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 139 ------VKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp ------EEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEE
T ss_pred ------ccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEE
Confidence 0001122223 56889999999987 99999999999999988 44 3334456788999999999 99999
Q ss_pred EEEeCCCeEEEEECCCc------eeEEeccCCCC---------CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 357 LTGGEDDLVQVWSMEDR------KVVAWGEGHNS---------WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 357 ~sgs~dg~I~vwd~~~~------~~~~~~~~h~~---------~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
++++.|+.|++||++.. +.+..+..|.. .|.+++|+| ++ .+|++++.|+.|+
T Consensus 210 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-------~~------~~l~~~~~dg~i~ 276 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-------RH------KFLYTAGSDGIIS 276 (342)
T ss_dssp EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-------TT------CCEEEEETTSCEE
T ss_pred EEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-------CC------CEEEEecCCceEE
Confidence 99999999999999887 77778887765 999999999 88 7899999999999
Q ss_pred EEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecC-CCCeeEEEEeCC--eE
Q 008939 422 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH-TEPLSGLIFTQE--SV 498 (548)
Q Consensus 422 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h-~~~V~~l~fspd--~l 498 (548)
+||+.+++++..+. +| ..+|++++ |+ .|
T Consensus 277 vwd~~~~~~~~~~~-----------------------------------------------~~h~~~v~~~~--~~~~~l 307 (342)
T 1yfq_A 277 CWNLQTRKKIKNFA-----------------------------------------------KFNEDSVVKIA--CSDNIL 307 (342)
T ss_dssp EEETTTTEEEEECC-----------------------------------------------CCSSSEEEEEE--ECSSEE
T ss_pred EEcCccHhHhhhhh-----------------------------------------------cccCCCceEec--CCCCeE
Confidence 99999888765433 45 88899999 65 59
Q ss_pred EEEECCCe-EEEEeC
Q 008939 499 LTVCREGH-IKIWMR 512 (548)
Q Consensus 499 ~t~s~Dg~-I~iW~~ 512 (548)
++++.||. .+.|..
T Consensus 308 ~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 308 CLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEEECTHHHHCSSS
T ss_pred EEEecCCcccccccc
Confidence 99999998 665554
No 95
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-32 Score=276.51 Aligned_cols=251 Identities=20% Similarity=0.234 Sum_probs=196.6
Q ss_pred EEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEE
Q 008939 168 SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 247 (548)
...++...|.+++|+|+ +.+|++|+.||.|++||+..... .... ....|...|++++|+|+++ +|+
T Consensus 6 ~~~~~~~~v~~~~~s~~---g~~l~~~~~d~~i~iw~~~~~~~----~~~~------~~~~h~~~v~~~~~s~~~~-~l~ 71 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQ---RTEFVTTTATNQVELYEQDGNGW----KHAR------TFSDHDKIVTCVDWAPKSN-RIV 71 (377)
T ss_dssp EEEECSSCCSCCEECSS---SSEEECCCSSSCBCEEEEETTEE----EECC------CBCCCSSCEEEEEECTTTC-CEE
T ss_pred eEecCCCcEEEEEECCC---CCEEEEecCCCEEEEEEccCCce----EEEE------EEecCCceEEEEEEeCCCC-EEE
Confidence 44556778999999998 88999999999999999986210 1111 1124889999999999998 899
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd 327 (548)
+++.|+.|++||+.... ...+...+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 72 s~s~d~~v~vwd~~~~~-----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 128 (377)
T 3dwl_C 72 TCSQDRNAYVYEKRPDG-----------------------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCY 128 (377)
T ss_dssp EEETTSSEEEC-----------------------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECC
T ss_pred EEeCCCeEEEEEcCCCC-----------------------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEE
Confidence 99999999999998632 0124556677889999999999999999999999999999
Q ss_pred CCCCe---EEEeeee-cCCceEEEEEccCCCEEEEEeCCCeEEEEECC------------------CceeEEeccCCCCC
Q 008939 328 YSKEQ---LICGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSME------------------DRKVVAWGEGHNSW 385 (548)
Q Consensus 328 ~~~~~---~~~~~~~-~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~------------------~~~~~~~~~~h~~~ 385 (548)
+++++ ++..+.. |...|.+++|+|++++|++++.|+.|++||++ .++++..+ +|...
T Consensus 129 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 207 (377)
T 3dwl_C 129 FEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW 207 (377)
T ss_dssp C-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS
T ss_pred ECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCce
Confidence 99876 3666777 99999999999999999999999999999995 35677777 89999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQP 465 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~ 465 (548)
|.+++|+| +| .+|++++.|+.|++||++++++...
T Consensus 208 v~~~~~sp-------~~------~~l~~~~~d~~i~iwd~~~~~~~~~-------------------------------- 242 (377)
T 3dwl_C 208 VHAVGFSP-------SG------NALAYAGHDSSVTIAYPSAPEQPPR-------------------------------- 242 (377)
T ss_dssp EEEEEECT-------TS------SCEEEEETTTEEC-CEECSTTSCEE--------------------------------
T ss_pred EEEEEECC-------CC------CEEEEEeCCCcEEEEECCCCCCcce--------------------------------
Confidence 99999999 98 6899999999999999988764211
Q ss_pred CCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 466 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 466 ~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
.+..+.+|...|++++|+|++ |++++.|+.+ +|+..
T Consensus 243 -----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 243 -----------ALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp -----------ECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred -----------eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 122345788999999999984 6666655555 66654
No 96
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-31 Score=268.60 Aligned_cols=266 Identities=17% Similarity=0.265 Sum_probs=218.4
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN 254 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~ 254 (548)
.+.+++|++. .+++++.||.|++||+.+. +. ...... .|...|++++|+|++. +|++++.||.
T Consensus 95 ~~~~~~~s~~-----~l~~~~~d~~v~lw~~~~~-----~~-~~~~~~-----~~~~~v~~v~~s~~~~-~l~~~~~dg~ 157 (401)
T 4aez_A 95 YLNLLDWSNL-----NVVAVALERNVYVWNADSG-----SV-SALAET-----DESTYVASVKWSHDGS-FLSVGLGNGL 157 (401)
T ss_dssp TCBCEEECTT-----SEEEEEETTEEEEEETTTC-----CE-EEEEEC-----CTTCCEEEEEECTTSS-EEEEEETTSC
T ss_pred eEEEEeecCC-----CEEEEECCCeEEEeeCCCC-----cE-eEeeec-----CCCCCEEEEEECCCCC-EEEEECCCCe
Confidence 3455666653 5889999999999998762 21 111110 1688999999999998 9999999999
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC-CCeE
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS-KEQL 333 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~-~~~~ 333 (548)
|++||+.. ...+..+..|...|.+++| ++++|++++.||.|++||++ ....
T Consensus 158 i~iwd~~~--------------------------~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 158 VDIYDVES--------------------------QTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp EEEEETTT--------------------------CCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred EEEEECcC--------------------------CeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 99999976 2456677788999999999 55799999999999999998 5667
Q ss_pred EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 008939 334 ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413 (548)
Q Consensus 334 ~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s 413 (548)
+..+..|.+.|.+++|+|++++|++|+.|+.|++||+++++++..+..|...|.+++|+| ++. .++++
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p-------~~~-----~ll~~ 277 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP-------WQS-----NLLAT 277 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECT-------TST-----TEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECC-------CCC-----CEEEE
Confidence 788899999999999999999999999999999999999999999999999999999999 762 46777
Q ss_pred Ee--CCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEE
Q 008939 414 VG--QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGL 491 (548)
Q Consensus 414 ~~--~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l 491 (548)
++ .|+.|++||+++++++..+. |...|.++
T Consensus 278 ~~gs~d~~i~i~d~~~~~~~~~~~------------------------------------------------~~~~v~~~ 309 (401)
T 4aez_A 278 GGGTMDKQIHFWNAATGARVNTVD------------------------------------------------AGSQVTSL 309 (401)
T ss_dssp ECCTTTCEEEEEETTTCCEEEEEE------------------------------------------------CSSCEEEE
T ss_pred ecCCCCCEEEEEECCCCCEEEEEe------------------------------------------------CCCcEEEE
Confidence 65 79999999999887765443 34679999
Q ss_pred EEeCCe--EEEEE--CCCeEEEEeCCCCCcc----ccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 492 IFTQES--VLTVC--REGHIKIWMRPGVAES----QSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 492 ~fspd~--l~t~s--~Dg~I~iW~~~~~~~~----~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
+|+|++ |++++ .||.|++|+++..... ...|...+. +++||+++|+++...|.+
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i 373 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENL 373 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred EECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 999974 77744 8999999998875422 235666665 889999999999877654
No 97
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.8e-31 Score=266.86 Aligned_cols=280 Identities=18% Similarity=0.154 Sum_probs=223.7
Q ss_pred cCcceEEEEEecCCCcEEEEEeC---CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHA---DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
|...|++++|+|++..++++++. ||.|++||+.... ........|...|.++
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~-------------------------~~~~~~~~~~~~v~~~ 71 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD-------------------------LKLLREIEKAKPIKCG 71 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS-------------------------EEEEEEEEESSCEEEE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc-------------------------ccceeeecccCcEEEE
Confidence 88999999999999856677776 9999999998621 0111223678999999
Q ss_pred EECCC---CCEEEEEECCCeEEEEeCCCCe-EEEeeeecCCceEEEEE------ccCCCEEEEEeCCCeEEEEECCCce-
Q 008939 306 AFSTD---GTYLATVGRDGYLRVFDYSKEQ-LICGGKSYYGALLCCAW------SMDGKYILTGGEDDLVQVWSMEDRK- 374 (548)
Q Consensus 306 ~~sp~---g~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~l~~------spdg~~l~sgs~dg~I~vwd~~~~~- 374 (548)
+|+|+ +++|++++.||.|++||+.+++ .+..+..|...|.+++| +|++++|++++.|+.|++||+++++
T Consensus 72 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~ 151 (357)
T 3i2n_A 72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD 151 (357)
T ss_dssp ECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS
T ss_pred EEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC
Confidence 99998 6999999999999999999887 78888999999999955 6899999999999999999999886
Q ss_pred eEEeccCCCC----CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCC
Q 008939 375 VVAWGEGHNS----WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ 450 (548)
Q Consensus 375 ~~~~~~~h~~----~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (548)
.+..+..|.. .|.+++|.+.|++ ++ .+|++++.|+.|++||+++++..........+..+.|++.+.
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 152 PVANMEPVQGENKRDCWTVAFGNAYNQ---EE------RVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp CSEEECCCTTSCCCCEEEEEEECCCC----CC------CEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSS
T ss_pred cceeccccCCCCCCceEEEEEEeccCC---CC------CEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCC
Confidence 6777766554 8999994332211 77 799999999999999999999877776667777888877210
Q ss_pred ccccCCeeeecccCCCCceeecCCCCceEEee-----cCCCCeeEEEEeCC---eEEEEECCCeEEEEeCCCCCcc----
Q 008939 451 SAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR-----VHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGVAES---- 518 (548)
Q Consensus 451 ~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~-----~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~~~~~---- 518 (548)
....+.++..++.+++||+....++..+. +|...|++++|+|+ .|++++.||.|++||+......
T Consensus 223 ---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 223 ---SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp ---SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred ---CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence 12556778889999999998877766555 89999999999997 4899999999999998754322
Q ss_pred -----------------ccCCCCcEE--EecCCCCceE-eeeccccc
Q 008939 519 -----------------QSSSSETVL--STSSKDKPLL-SSKVVTSS 545 (548)
Q Consensus 519 -----------------~~~~~~~v~--~~s~d~~~l~-s~~~~g~~ 545 (548)
...|...+. +++|++++|+ ++...|.+
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred CCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence 224666666 7899999998 67766544
No 98
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-30 Score=268.37 Aligned_cols=289 Identities=9% Similarity=0.034 Sum_probs=223.1
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCC-CCeEEEec--------------------------------------
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDK-DPIKSIHF-------------------------------------- 171 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~-~~i~~~~~-------------------------------------- 171 (548)
.++.+++|+++|++++++.++.|++||+.++.. ..+.....
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 467789999999988888888999999987540 02222221
Q ss_pred ----------------CCCCceEEEecCCCCCCceE-EEEEcCCcEEEEEee--ecccccccceeeeeeeccCCcccCcc
Q 008939 172 ----------------SNSNPVCHAFDQDAKDGHDL-LIGLNSGDVYSVSLR--QQLQDVGKKLVGAHHYNKDGSVNNSR 232 (548)
Q Consensus 172 ----------------~~~~~~~~~~~p~~~~~~~l-~~g~~dg~I~iwdl~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (548)
+...+.+++|+|+ +.+| ++++.||.|++||+. . ++.+..... ..+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---~~~l~~~~~~dg~v~iwd~~~~~-----~~~~~~~~~-----~~~~~~ 151 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSD---ESRLIACADSDKSLLVFDVDKTS-----KNVLKLRKR-----FCFSKR 151 (450)
T ss_dssp ---------------CCCCCEEEEEECTT---SSEEEEEEGGGTEEEEEEECSSS-----SSCEEEEEE-----EECSSC
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCC---CCEEEEEECCCCeEEEEECcCCC-----Cceeeeeec-----ccCCCC
Confidence 2226899999999 7775 888899999999998 4 122111110 125788
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC--
Q 008939 233 CTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-- 310 (548)
Q Consensus 233 v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-- 310 (548)
|++++|+|++. +|++++.||.|++|++....... .++..+..|...|.+++|+|+
T Consensus 152 v~~~~~sp~~~-~l~~~~~~g~v~~~~~~~~~~~~----------------------~~~~~~~~h~~~v~~~~~sp~~~ 208 (450)
T 2vdu_B 152 PNAISIAEDDT-TVIIADKFGDVYSIDINSIPEEK----------------------FTQEPILGHVSMLTDVHLIKDSD 208 (450)
T ss_dssp EEEEEECTTSS-EEEEEETTSEEEEEETTSCCCSS----------------------CCCCCSEECSSCEEEEEEEECTT
T ss_pred ceEEEEcCCCC-EEEEEeCCCcEEEEecCCccccc----------------------ccceeeecccCceEEEEEcCCCC
Confidence 99999999998 99999999999999997632110 033456678899999999999
Q ss_pred -CCEEEEEECCCeEEEEeCCCCeEEEe-eeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC-------
Q 008939 311 -GTYLATVGRDGYLRVFDYSKEQLICG-GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG------- 381 (548)
Q Consensus 311 -g~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~------- 381 (548)
+++|++++.|+.|++||+.+++++.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++++..+..
T Consensus 209 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~ 287 (450)
T 2vdu_B 209 GHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPY 287 (450)
T ss_dssp SCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGG
T ss_pred CCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhh
Confidence 99999999999999999999988776 56899999999999 999999999999999999999988877752
Q ss_pred ------------------CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEEC--CCCeEEeeeecCCCC
Q 008939 382 ------------------HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDL--EMDEIVVPLRRGPLG 440 (548)
Q Consensus 382 ------------------h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~--~~~~~~~~~~~~~~~ 440 (548)
+...|..++|+| ++ .+|++++ .|+.|++||+ ..+..+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-------~~------~~l~~~~~~d~~i~iw~~~~~~~~~l~-------- 346 (450)
T 2vdu_B 288 LNDQHLAPPRFQNENNDIIEFAVSKIIKSK-------NL------PFVAFFVEATKCIIILEMSEKQKGDLA-------- 346 (450)
T ss_dssp CCTTSBC----------CBCCCEEEEEECS-------SS------SEEEEEETTCSEEEEEEECSSSTTCEE--------
T ss_pred hhhcccccccccccccccceEEEEEEEEeC-------CC------CEEEEEECCCCeEEEEEeccCCCCcee--------
Confidence 245799999999 88 6788887 8999999999 4442111
Q ss_pred CCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEEC-------CCeEEEEeC
Q 008939 441 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCR-------EGHIKIWMR 512 (548)
Q Consensus 441 ~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~-------Dg~I~iW~~ 512 (548)
.+..+..| ..|.+++|+|+. +++.+. +..|++|.+
T Consensus 347 ------------------------------------~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 347 ------------------------------------LKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp ------------------------------------EEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred ------------------------------------eccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 12234456 789999999986 344332 556899986
Q ss_pred CC
Q 008939 513 PG 514 (548)
Q Consensus 513 ~~ 514 (548)
..
T Consensus 390 ~~ 391 (450)
T 2vdu_B 390 NL 391 (450)
T ss_dssp ET
T ss_pred Ec
Confidence 54
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.1e-31 Score=274.02 Aligned_cols=314 Identities=11% Similarity=0.164 Sum_probs=215.0
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc-----ccceeeeeeeccCCcccC------------cceE
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV-----GKKLVGAHHYNKDGSVNN------------SRCT 234 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~-----~~~~~~~~~~~~~~~~~~------------~~v~ 234 (548)
+.+.|.+++|+|+ +.+|++|+.||.|++||+....... ..++.... ..|. ..|+
T Consensus 27 ~~~~V~~v~~s~~---g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~------~~h~~~~~~~~~~~~~~~V~ 97 (447)
T 3dw8_B 27 EADIISTVEFNHS---GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF------QSHEPEFDYLKSLEIEEKIN 97 (447)
T ss_dssp GGGSEEEEEECSS---SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE------ECCCCEEEGGGTEEECCCCC
T ss_pred ccCcEEEEEECCC---CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc------ccccccccccccccccCceE
Confidence 4568999999998 8899999999999999998632100 00011111 1355 8899
Q ss_pred EEEEecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccce---------eee--ec--CCCCCCCCeeE-eeecC
Q 008939 235 SVTWVPGGD-GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ---------FSV--AH--PRYSKSNPIAR-WHICQ 299 (548)
Q Consensus 235 ~l~~~p~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~---------~~~--~~--~~~~~~~~~~~-~~~h~ 299 (548)
+++|+|++. .+|++++.|+.|++||+.........+........ +.+ .+ .......+... ...|.
T Consensus 98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 177 (447)
T 3dw8_B 98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT 177 (447)
T ss_dssp EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence 999999982 28999999999999998752210000000000000 000 00 00000011223 35799
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEeCCC-CeEEE-------eeeecCCceEEEEEccCC-CEEEEEeCCCeEEEEEC
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSK-EQLIC-------GGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSM 370 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-~~~~~-------~~~~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~ 370 (548)
..|.+++|+|++++|+++ .|+.|++||+++ ++.+. .+..|...|.+++|+|++ ++|++|+.|+.|++||+
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 999999999999999998 899999999984 44443 256789999999999998 99999999999999999
Q ss_pred CCcee----EEeccCCCC------------CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC-CeEEee
Q 008939 371 EDRKV----VAWGEGHNS------------WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM-DEIVVP 433 (548)
Q Consensus 371 ~~~~~----~~~~~~h~~------------~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~-~~~~~~ 433 (548)
++++. +..+.+|.. .|.+++|+| +| .+|++++. +.|++||+++ ++++..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~g------~~l~~~~~-~~v~iwd~~~~~~~~~~ 322 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-------SG------RYMMTRDY-LSVKVWDLNMENRPVET 322 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-------TS------SEEEEEES-SEEEEEETTCCSSCSCC
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECC-------CC------CEEEEeeC-CeEEEEeCCCCccccce
Confidence 99886 778888876 999999999 98 78999988 9999999987 665544
Q ss_pred eecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCC---CeeEEEEeCC--eEEEEECCCeEE
Q 008939 434 LRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTE---PLSGLIFTQE--SVLTVCREGHIK 508 (548)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~---~V~~l~fspd--~l~t~s~Dg~I~ 508 (548)
+..+..... .+.+. .+.. .+..++|+|+ .|++++.||.|+
T Consensus 323 ~~~~~~~~~-------------------------~l~~~----------~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~ 367 (447)
T 3dw8_B 323 YQVHEYLRS-------------------------KLCSL----------YENDCIFDKFECCWNGSDSVVMTGSYNNFFR 367 (447)
T ss_dssp EESCGGGTT-------------------------THHHH----------HHTSGGGCCCCEEECTTSSEEEEECSTTEEE
T ss_pred eeccccccc-------------------------ccccc----------ccccccccceEEEECCCCCEEEEeccCCEEE
Confidence 433100000 00000 0001 2345999997 499999999999
Q ss_pred EEeCCCCCcccc----------------------------------CCCCcE--EEecCCCCceEeeecccc
Q 008939 509 IWMRPGVAESQS----------------------------------SSSETV--LSTSSKDKPLLSSKVVTS 544 (548)
Q Consensus 509 iW~~~~~~~~~~----------------------------------~~~~~v--~~~s~d~~~l~s~~~~g~ 544 (548)
+||+.++..... .....+ ++++|++++||++...+.
T Consensus 368 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~ 439 (447)
T 3dw8_B 368 MFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNL 439 (447)
T ss_dssp EEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCE
T ss_pred EEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEeccee
Confidence 999887653210 112223 489999999999877643
No 100
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.2e-30 Score=261.67 Aligned_cols=284 Identities=14% Similarity=0.169 Sum_probs=226.7
Q ss_pred ccCCCCCCceeEEeCCC---CCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 125 GASSSSTSMTNTNFDGK---GTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~---g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
...+|.+.|.+++|+|+ |.+|++++.| .|+|||+.+........+..|...+.+++|+|+ +.+|++++.||.|
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~v 110 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD---GSKVFTASCDKTA 110 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT---SSEEEEEETTSEE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC---CCEEEEEcCCCcE
Confidence 45789999999999999 6999998887 999999987332334677779999999999998 8899999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEE--ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccce
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTW--VPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
++||++.. ...... .|...|++++| +|++. +|++++.||.|++||++..
T Consensus 111 ~iwd~~~~------~~~~~~-------~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~--------------- 161 (368)
T 3mmy_A 111 KMWDLSSN------QAIQIA-------QHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSS--------------- 161 (368)
T ss_dssp EEEETTTT------EEEEEE-------ECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCS---------------
T ss_pred EEEEcCCC------Cceeec-------cccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCC---------------
Confidence 99999862 222222 27899999999 78887 8999999999999999862
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee--eecCCceEEEEEccCCCE-
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDGKY- 355 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~--~~~~~~v~~l~~spdg~~- 355 (548)
.++..+..| ..+.++.+.+ ..+++++.|+.+++|+++........ ..+...+.++.+.++...
T Consensus 162 -----------~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (368)
T 3mmy_A 162 -----------NPMMVLQLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNK 227 (368)
T ss_dssp -----------SCSEEEECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSC
T ss_pred -----------cEEEEEecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCC
Confidence 234444444 3566666654 47888999999999999876543322 223455677777666554
Q ss_pred ---EEEEeCCCeEEEEECCCc---eeEEeccCCCC------------CeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 356 ---ILTGGEDDLVQVWSMEDR---KVVAWGEGHNS------------WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 356 ---l~sgs~dg~I~vwd~~~~---~~~~~~~~h~~------------~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
+++++.|+.|++||++.. +.+..+.+|.. .|.+++|+| ++ .+|++++.|
T Consensus 228 ~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-------~~------~~l~s~~~d 294 (368)
T 3mmy_A 228 PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-------VH------GTLATVGSD 294 (368)
T ss_dssp EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-------TT------CCEEEEETT
T ss_pred CCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-------CC------CEEEEEccC
Confidence 999999999999999987 55677777776 799999999 88 789999999
Q ss_pred CeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe
Q 008939 418 TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES 497 (548)
Q Consensus 418 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~ 497 (548)
+.|++||+++++++..+ .+|..+|++++|+|++
T Consensus 295 g~i~iwd~~~~~~~~~~-----------------------------------------------~~~~~~v~~~~~s~~g 327 (368)
T 3mmy_A 295 GRFSFWDKDARTKLKTS-----------------------------------------------EQLDQPISACCFNHNG 327 (368)
T ss_dssp SCEEEEETTTTEEEEEC-----------------------------------------------CCCSSCEEEEEECTTS
T ss_pred CeEEEEECCCCcEEEEe-----------------------------------------------cCCCCCceEEEECCCC
Confidence 99999999988776543 3588899999999985
Q ss_pred --EEEEECCCeEEEEeCCC
Q 008939 498 --VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 498 --l~t~s~Dg~I~iW~~~~ 514 (548)
|++++.|+..+.|++..
T Consensus 328 ~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 328 NIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp SCEEEEECCCSTTCGGGCC
T ss_pred CeEEEEecccccccccccC
Confidence 99999998777666543
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.4e-31 Score=269.59 Aligned_cols=279 Identities=17% Similarity=0.173 Sum_probs=216.3
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec-CCCcEEEEEeCCC
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVVGHADG 253 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~s~~~dg 253 (548)
...+++++|+. ...+++++.+|.|++|++...... .+.+ .....|...|++++|+| ++. +|++|+.||
T Consensus 36 ~~~~~~~~~~~--~~~~~~~~~~g~i~v~~~~~~~~~-~~~~-------~~~~~h~~~V~~~~~~p~~~~-~l~s~s~dg 104 (402)
T 2aq5_A 36 DSGFCAVNPKF--MALICEASGGGAFLVLPLGKTGRV-DKNV-------PLVCGHTAPVLDIAWCPHNDN-VIASGSEDC 104 (402)
T ss_dssp SSCSEEECSSE--EEEEBCCSSSCCEEEEETTCCEEC-CTTC-------CCBCCCSSCEEEEEECTTCTT-EEEEEETTS
T ss_pred CCCcEEECCCe--EEEEEEEcCCCEEEEEECccCCCC-CCCC-------ceEecCCCCEEEEEeCCCCCC-EEEEEeCCC
Confidence 34567888872 123344788999999998652110 0111 01124899999999999 666 999999999
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCe
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~~~ 332 (548)
.|++||+...+... ....++..+..|...|.+++|+|++ ++|++++.|+.|++||+++++
T Consensus 105 ~v~vw~~~~~~~~~-------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 165 (402)
T 2aq5_A 105 TVMVWEIPDGGLVL-------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA 165 (402)
T ss_dssp EEEEEECCTTCCSS-------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE
T ss_pred eEEEEEccCCCCcc-------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC
Confidence 99999998632111 0125677888999999999999997 699999999999999999999
Q ss_pred EEEee--eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec-cCCCCC-eEEEEEecCCCCCCCCCCcccee
Q 008939 333 LICGG--KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG-EGHNSW-VSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 333 ~~~~~--~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~-~~h~~~-V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
.+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+ .+|... +..+.|+| ++
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------ 232 (402)
T 2aq5_A 166 AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-------EG------ 232 (402)
T ss_dssp EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS-------TT------
T ss_pred ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC-------CC------
Confidence 99888 789999999999999999999999999999999999999888 788876 89999999 88
Q ss_pred EEEEEE---eCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCC
Q 008939 409 YRFGSV---GQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHT 485 (548)
Q Consensus 409 ~~l~s~---~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~ 485 (548)
.+|+++ +.|+.|++||+++.+...... ...|.
T Consensus 233 ~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~---------------------------------------------~~~~~ 267 (402)
T 2aq5_A 233 KILTTGFSRMSERQVALWDTKHLEEPLSLQ---------------------------------------------ELDTS 267 (402)
T ss_dssp EEEEEEECTTCCEEEEEEETTBCSSCSEEE---------------------------------------------ECCCC
T ss_pred cEEEEeccCCCCceEEEEcCccccCCceEE---------------------------------------------eccCC
Confidence 788888 799999999998755311110 01356
Q ss_pred CCeeEEEEeCCe--EE-EEECCCeEEEEeCCCCCc---cc--cCCCCcE--EEecCCCCceEeeec
Q 008939 486 EPLSGLIFTQES--VL-TVCREGHIKIWMRPGVAE---SQ--SSSSETV--LSTSSKDKPLLSSKV 541 (548)
Q Consensus 486 ~~V~~l~fspd~--l~-t~s~Dg~I~iW~~~~~~~---~~--~~~~~~v--~~~s~d~~~l~s~~~ 541 (548)
..|..++|+|+. |+ +++.||.|++|++..... .. ..+...+ ++++|++++++++..
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~ 333 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCE 333 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTE
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecce
Confidence 779999999973 54 556899999999987652 11 1233444 388999998887654
No 102
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-31 Score=278.41 Aligned_cols=261 Identities=12% Similarity=0.056 Sum_probs=193.5
Q ss_pred EEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC------CCcEEEEEeCCCcEEEEEcCCCC
Q 008939 191 LLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG------GDGAFVVGHADGNLYVYEKSKDG 264 (548)
Q Consensus 191 l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~------~~~~l~s~~~dg~v~vwd~~~~~ 264 (548)
|++++.|+.|+|||+.... .......... .|...|++++|+|+ +. +|++++.||+|+|||+....
T Consensus 176 laS~s~D~tI~iWd~~~~~--~~~~~~~~l~------~~~~~V~~v~wsp~~~~~~~~~-~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTST--LHCVKVQTIV------HSFGEVWDLKWHEGCHAPHLVG-CLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp ------CEEEEEEEEETTT--CCEEEEEEEE------ECCCSEEEEEECSSCCCSSSSC-EEEEEETTSCEEEEECCCCS
T ss_pred hccCCCCceEEEEEccCCC--CCceEEEEEE------ecCCcEEEEEECCCCCCCCCCc-eEEEEecCCeEEEEEcCCCc
Confidence 3445577899999987521 0000001011 25788999999997 34 89999999999999997532
Q ss_pred CCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe-EEEeeeecCCc
Q 008939 265 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ-LICGGKSYYGA 343 (548)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~ 343 (548)
...... + ....+...+..|...|.+++|++++ .|++|+.||+|++||+++++ +...+.+|...
T Consensus 247 ~~~~~~--------~-------~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~ 310 (524)
T 2j04_B 247 TDVHVF--------K-------MCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSY 310 (524)
T ss_dssp SSSSEE--------E-------CCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSC
T ss_pred cccccc--------e-------eecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeeccccc
Confidence 110000 0 0124566788899999999999864 89999999999999998764 44567899999
Q ss_pred eEEE--EEccCC-CEEEEEeCCCeEEEEECCCceeEEeccCCCC--CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 344 LLCC--AWSMDG-KYILTGGEDDLVQVWSMEDRKVVAWGEGHNS--WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 344 v~~l--~~spdg-~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~--~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
|.+| +|+|++ ++|++|+.|++|+|||+++++++..+.+|.. .|.+++|+| ++ ..|++++.|+
T Consensus 311 V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-------~~------~~l~s~~~d~ 377 (524)
T 2j04_B 311 ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-------QI------YSYIYSDGAS 377 (524)
T ss_dssp EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-------TT------TEEEEECSSS
T ss_pred EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC-------Cc------CeEEEeCCCC
Confidence 9999 578888 8999999999999999999887777766653 588999999 88 6899999999
Q ss_pred eEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe-
Q 008939 419 RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES- 497 (548)
Q Consensus 419 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~- 497 (548)
.|++||++++.++. .+.+|...|++|+|+|++
T Consensus 378 tv~lwd~~~~~~~~-----------------------------------------------~l~gH~~~V~sva~Sp~g~ 410 (524)
T 2j04_B 378 SLRAVPSRAAFAVH-----------------------------------------------PLVSRETTITAIGVSRLHP 410 (524)
T ss_dssp EEEEEETTCTTCCE-----------------------------------------------EEEECSSCEEEEECCSSCC
T ss_pred cEEEEECcccccce-----------------------------------------------eeecCCCceEEEEeCCCCC
Confidence 99999998765432 344699999999999985
Q ss_pred -EEEEECCCeEEEEeCCCCCccccC------CCCcEE--EecCCCCce
Q 008939 498 -VLTVCREGHIKIWMRPGVAESQSS------SSETVL--STSSKDKPL 536 (548)
Q Consensus 498 -l~t~s~Dg~I~iW~~~~~~~~~~~------~~~~v~--~~s~d~~~l 536 (548)
|++|+.||+|++|++......... ....++ +++|+++.+
T Consensus 411 ~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 411 MVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp BCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred eEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 999999999999998664322110 111343 678998854
No 103
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=2.8e-30 Score=266.10 Aligned_cols=275 Identities=13% Similarity=0.198 Sum_probs=215.3
Q ss_pred EEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc-----ccceeeeeeeccCCcccCcceEEEEEecCC
Q 008939 168 SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV-----GKKLVGAHHYNKDGSVNNSRCTSVTWVPGG 242 (548)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~ 242 (548)
....|...|++++|+|+ ++.+|++++.+|.|++||+....... .+.+.. . ..|...|++++|+|++
T Consensus 123 ~~~~h~~~v~~l~~~p~--~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~-~------~~h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQ--NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLR-L------RGHQKEGYGLSWNPNL 193 (430)
T ss_dssp EEEEESSCCSEEEEETT--EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEE-E------ECCSSCCCCEEECTTS
T ss_pred EEEcCCCcEEEEEECCC--CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEE-e------cCCCCCeEEEEeCCCC
Confidence 34458889999999996 25689999999999999997621111 111111 1 1378899999999998
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCC
Q 008939 243 DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDG 321 (548)
Q Consensus 243 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg 321 (548)
..+|++|+.||.|++||+......... ..+...+..|...|.+++|+| ++.+|++++.|+
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg 254 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRV-------------------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 254 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGE-------------------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCce-------------------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC
Confidence 878999999999999999863211000 122456677889999999999 788999999999
Q ss_pred eEEEEeCCCC---eEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCC-ceeEEeccCCCCCeEEEEEecCCC
Q 008939 322 YLRVFDYSKE---QLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWS 396 (548)
Q Consensus 322 ~v~vwd~~~~---~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~ 396 (548)
.|++||++++ +.+..+..|...|++++|+|+++ +|++|+.|+.|++||+++ .+++..+.+|...|.+++|+|
T Consensus 255 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp--- 331 (430)
T 2xyi_A 255 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP--- 331 (430)
T ss_dssp EEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS---
T ss_pred eEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC---
Confidence 9999999987 56777788999999999999997 688999999999999998 567888889999999999999
Q ss_pred CCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCC
Q 008939 397 QPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS 476 (548)
Q Consensus 397 ~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~ 476 (548)
++. .+|++++.|+.|++||+........... -.-....
T Consensus 332 ----~~~-----~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------------------------~~~~~~~ 369 (430)
T 2xyi_A 332 ----HNE-----TILASSGTDRRLHVWDLSKIGEEQSTED---------------------------------AEDGPPE 369 (430)
T ss_dssp ----SCT-----TEEEEEETTSCCEEEEGGGTTCCCCHHH---------------------------------HHHCCTT
T ss_pred ----CCC-----CEEEEEeCCCcEEEEeCCCCccccCccc---------------------------------cccCCcc
Confidence 762 4799999999999999986332111000 0000123
Q ss_pred ceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEeCCCC
Q 008939 477 PLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 477 ~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~~ 515 (548)
.+..+.+|...|++++|+|+ .|++++.||.|+||++...
T Consensus 370 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 370 LLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred eEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 45566789999999999997 4899999999999998654
No 104
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.98 E-value=5.4e-30 Score=258.03 Aligned_cols=289 Identities=12% Similarity=0.055 Sum_probs=208.3
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCC-------cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSG-------DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg-------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
.-.|+|++|+|+ +.+|++|+.+. .|++|++..........+.....+ ....|...|.++++.+ . .
T Consensus 14 g~PV~sv~fs~d---g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~--~l~~~~~~v~s~~~~~--~-~ 85 (365)
T 4h5i_A 14 GYPAYGAKFLNN---DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEF--ALEDNDDSPTAIDASK--G-I 85 (365)
T ss_dssp SSCEEEEEEEET---TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEE--ECCTTSCCCCEEEEET--T-E
T ss_pred CCCEEEEEEeCC---CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEE--EccCCCCceEEEEeCC--C-E
Confidence 347899999998 88899887533 599999876322211111111111 1223677888887754 3 5
Q ss_pred EEEE-----------eCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEE
Q 008939 246 FVVG-----------HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYL 314 (548)
Q Consensus 246 l~s~-----------~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l 314 (548)
+++| +.|+.+++|++............ ........++..+.+++|+|||++|
T Consensus 86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~v~fSpDg~~l 148 (365)
T 4h5i_A 86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS-----------------VDFDASTNADDYTKLVYISREGTVA 148 (365)
T ss_dssp EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE-----------------ECSSCCCCTTCCEEEEEECTTSSCE
T ss_pred EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeee-----------------eceeecCCcccCEEEEEEcCCCCEE
Confidence 5554 45778999998753211000000 0001112234568899999999998
Q ss_pred EEEE--CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE--eccCCCCCeEEEE
Q 008939 315 ATVG--RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA--WGEGHNSWVSGVA 390 (548)
Q Consensus 315 ~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~--~~~~h~~~V~~v~ 390 (548)
++++ .|+.|+|||+++++++..+. |...|.+++|+|||++|++++.+ .+++|+..+++.+. ...+|...|.+++
T Consensus 149 a~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 226 (365)
T 4h5i_A 149 AIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKIN 226 (365)
T ss_dssp EEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEE
T ss_pred EEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEE
Confidence 7655 68999999999999988876 77889999999999999999855 56677777666543 4457899999999
Q ss_pred EecCCCCCCCCCCccceeEEEEEEeCCC----eEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCC
Q 008939 391 FDSYWSQPNSDGTAETVMYRFGSVGQDT----RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 391 ~~p~~~~~~~dg~~~~~~~~l~s~~~Dg----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
|+| || .++++++.|+ .+++||+........
T Consensus 227 fsp-------dg------~~l~~~s~d~~~~~~i~~~~~~~~~~~~~--------------------------------- 260 (365)
T 4h5i_A 227 FIA-------DD------TVLIAASLKKGKGIVLTKISIKSGNTSVL--------------------------------- 260 (365)
T ss_dssp EEE-------TT------EEEEEEEESSSCCEEEEEEEEETTEEEEE---------------------------------
T ss_pred EcC-------CC------CEEEEEecCCcceeEEeecccccceecce---------------------------------
Confidence 999 99 7899999887 688899877654321
Q ss_pred CceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcc---ccCCCCcEE--EecCCCCceEee
Q 008939 467 PSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAES---QSSSSETVL--STSSKDKPLLSS 539 (548)
Q Consensus 467 ~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~---~~~~~~~v~--~~s~d~~~l~s~ 539 (548)
....+.+|...|++|+|+||+ |++|+.|++|+|||+.+.+.. ...|...|. +||||+++||++
T Consensus 261 ----------~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~ 330 (365)
T 4h5i_A 261 ----------RSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV 330 (365)
T ss_dssp ----------EEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred ----------eeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence 122456789999999999984 999999999999999887632 346888887 889999999999
Q ss_pred ecccc
Q 008939 540 KVVTS 544 (548)
Q Consensus 540 ~~~g~ 544 (548)
...+.
T Consensus 331 S~D~t 335 (365)
T 4h5i_A 331 SAANT 335 (365)
T ss_dssp ETTSE
T ss_pred eCCCe
Confidence 87654
No 105
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=1.2e-29 Score=260.47 Aligned_cols=257 Identities=17% Similarity=0.280 Sum_probs=214.8
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
.+...+|...|++++|+|+|.+|++++.| .|+|||++++. .+..+..|...+.++.+++ ..|++|+.|+.++
T Consensus 140 ~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~--~~~~~~~h~~~v~~~s~~~-----~~l~sgs~d~~i~ 212 (420)
T 4gga_A 140 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--RLRNMTSHSARVGSLSWNS-----YILSSGSRSGHIH 212 (420)
T ss_dssp EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEET-----TEEEEEETTSEEE
T ss_pred EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc--EEEEEeCCCCceEEEeeCC-----CEEEEEeCCCcee
Confidence 34566788999999999999999999988 99999999854 8889998999999988864 4899999999999
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
+||.... ........ .|...+..+.|+|++. ++++++.|+.|++|+......
T Consensus 213 ~~d~~~~-----~~~~~~~~------~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~---------------- 264 (420)
T 4gga_A 213 HHDVRVA-----EHHVATLS------GHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEG---------------- 264 (420)
T ss_dssp EEETTSS-----SCEEEEEE------CCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSS----------------
T ss_pred Eeeeccc-----ceeeEEec------ccccceeeeeecCCCC-eeeeeeccccceEEeeccccc----------------
Confidence 9998752 12211111 3789999999999999 999999999999999976321
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEE--ECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATV--GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~--~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 358 (548)
....+.....|...|.+++|+|+ ..+++++ +.|+.|++||+.+++++..+..+ ..+.++.|+|+++.|++
T Consensus 265 ------~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 265 ------GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS 337 (420)
T ss_dssp ------CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEE
T ss_pred ------cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEE
Confidence 12345566778899999999995 4566654 47999999999999998888755 56899999999998887
Q ss_pred Ee--CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 359 GG--EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 359 gs--~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
++ .|+.|+|||+.+++++..+.+|.+.|++|+|+| || .+|+|++.|++|+|||+.........
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-------dg------~~l~S~s~D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-------DG------ATVASAAADETLRLWRCFELDPARRR 402 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-------TS------SCEEEEETTTEEEEECCSCSSCC---
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-------CC------CEEEEEecCCeEEEEECCCCCccchh
Confidence 65 789999999999999999999999999999999 99 78999999999999999876554433
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=2.8e-30 Score=266.55 Aligned_cols=263 Identities=16% Similarity=0.252 Sum_probs=218.7
Q ss_pred cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 171 FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 171 ~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
.+...+.|+.| + +.+|++|+.||.|++||+.+ ++... .. ..|...|++++| ++. +|++|+
T Consensus 131 ~~~~~v~~~~~--d---~~~l~~g~~dg~i~iwd~~~-----~~~~~-~~------~~h~~~v~~l~~--~~~-~l~sg~ 190 (435)
T 1p22_A 131 ETSKGVYCLQY--D---DQKIVSGLRDNTIKIWDKNT-----LECKR-IL------TGHTGSVLCLQY--DER-VIITGS 190 (435)
T ss_dssp SSCCCEEEEEC--C---SSEEEEEESSSCEEEEESSS-----CCEEE-EE------CCCSSCEEEEEC--CSS-EEEEEE
T ss_pred CCCCcEEEEEE--C---CCEEEEEeCCCeEEEEeCCC-----CeEEE-EE------cCCCCcEEEEEE--CCC-EEEEEc
Confidence 34556888877 3 67999999999999999876 22221 11 138899999999 566 999999
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.||.|++||+.+ ...+..+..|...|.+++|++ .+|++++.||.|++||+.+
T Consensus 191 ~dg~i~vwd~~~--------------------------~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 242 (435)
T 1p22_A 191 SDSTVRVWDVNT--------------------------GEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMAS 242 (435)
T ss_dssp TTSCEEEEESSS--------------------------CCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSS
T ss_pred CCCeEEEEECCC--------------------------CcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCC
Confidence 999999999986 244667778899999999974 5999999999999999988
Q ss_pred CeEE---EeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 331 EQLI---CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 331 ~~~~---~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
++.+ ..+.+|...|.+++| ++++|++|+.|+.|++||+++++++..+.+|...|.++.|++
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-------------- 306 (435)
T 1p22_A 243 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD-------------- 306 (435)
T ss_dssp SSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET--------------
T ss_pred CCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCC--------------
Confidence 7654 567789999999999 788999999999999999999999999999999999999964
Q ss_pred eEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC
Q 008939 408 MYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP 487 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~ 487 (548)
.+|++++.|+.|++||+++++++..+ .+|...
T Consensus 307 -~~l~~g~~dg~i~iwd~~~~~~~~~~-----------------------------------------------~~h~~~ 338 (435)
T 1p22_A 307 -RLVVSGSSDNTIRLWDIECGACLRVL-----------------------------------------------EGHEEL 338 (435)
T ss_dssp -TEEEEEETTSCEEEEETTTCCEEEEE-----------------------------------------------CCCSSC
T ss_pred -CEEEEEeCCCeEEEEECCCCCEEEEE-----------------------------------------------eCCcCc
Confidence 58999999999999999988765443 358889
Q ss_pred eeEEEEeCCeEEEEECCCeEEEEeCCCCC-----------ccccCCCCcEEEecCCCCceEeeeccccc
Q 008939 488 LSGLIFTQESVLTVCREGHIKIWMRPGVA-----------ESQSSSSETVLSTSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 488 V~~l~fspd~l~t~s~Dg~I~iW~~~~~~-----------~~~~~~~~~v~~~s~d~~~l~s~~~~g~~ 545 (548)
|.+++|.+..|++++.||.|++||+.... .....|...|.++..++++|+++...|.+
T Consensus 339 v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i 407 (435)
T 1p22_A 339 VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTI 407 (435)
T ss_dssp EEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEE
T ss_pred EEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEE
Confidence 99999988889999999999999975433 12336777777777799999999877654
No 107
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.5e-29 Score=253.92 Aligned_cols=299 Identities=12% Similarity=0.019 Sum_probs=211.4
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceE-EEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDL-LIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l-~~g~~dg~I~iwd 204 (548)
..+|...|.+++|+|+|++++++..+.++||+++... .+....+. .+..+++.+. ++.+ ++++.++.|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~--~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVA--HIMSQEMR--HLSKVRMLHR---TNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSEEEEEEETTEE--EEEEEECS--CCCEEEECTT---SSEEEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcc--eeeeeecC--CeEEEEEcCC---CCEEEEEECCccEEEEEE
Confidence 3678999999999999999999988899999988633 44444433 5777888877 4455 6678889999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+.+ ++ ...... +...|.+++|+++. ++++ .|+.|++||+.........+
T Consensus 88 ~~~-----~~-~~~~~~-------~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~-------------- 136 (355)
T 3vu4_A 88 DVK-----KQ-DVSRIK-------VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDD-------------- 136 (355)
T ss_dssp TTT-----TE-EEEEEE-------CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCC--------------
T ss_pred CCC-----Cc-EEEEEE-------CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEe--------------
Confidence 876 22 222222 46689999998763 4443 47899999998631221111
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEE--EECCCeEEEEeCCCCe----------------EEEeeeecCCceEE
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLAT--VGRDGYLRVFDYSKEQ----------------LICGGKSYYGALLC 346 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s--~~~dg~v~vwd~~~~~----------------~~~~~~~~~~~v~~ 346 (548)
.. ....+++++ .++++ ++.||.|++||+.+++ .+..+.+|.+.|.+
T Consensus 137 -----------~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~ 200 (355)
T 3vu4_A 137 -----------IR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKM 200 (355)
T ss_dssp -----------EE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEE
T ss_pred -----------cc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEE
Confidence 11 233455666 56666 5789999999999765 26778899999999
Q ss_pred EEEccCCCEEEEEeCCCe-EEEEECCCceeEEecc-C-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 008939 347 CAWSMDGKYILTGGEDDL-VQVWSMEDRKVVAWGE-G-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 423 (548)
Q Consensus 347 l~~spdg~~l~sgs~dg~-I~vwd~~~~~~~~~~~-~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lw 423 (548)
++|+|++++|++|+.|+. |++||+++++++..+. + |...|.+++|+| || .+|++++.|+.|++|
T Consensus 201 ~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~-------~~------~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 201 VRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST-------DG------SKLAVVSDKWTLHVF 267 (355)
T ss_dssp EEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECT-------TS------CEEEEEETTCEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECC-------CC------CEEEEEECCCEEEEE
Confidence 999999999999999998 9999999999999998 6 999999999999 99 799999999999999
Q ss_pred ECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEE
Q 008939 424 DLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTV 501 (548)
Q Consensus 424 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~ 501 (548)
|++.+.......... . +.+.-....|. ...+.++ ..+..+...++|+++. |+++
T Consensus 268 ~~~~~~~~~~~~~~~----~-~~~~~~~~~~~-----------~~~~~~~--------~~~~~~~~~~a~~~d~~~l~~~ 323 (355)
T 3vu4_A 268 EIFNDQDNKRHALKG----W-INMKYFQSEWS-----------LCNFKLS--------VDKHVRGCKIAWISESSLVVVW 323 (355)
T ss_dssp ESSCCSCCCSEETTT----T-EECCCCCCSSC-----------SEEEECC--------CCTTCCCCEEEESSSSEEEEEE
T ss_pred EccCCCCcccccccc----e-eeccccccccc-----------eeEEEec--------cCCCCCceEEEEeCCCCEEEEE
Confidence 998764221111100 0 11100000110 0000010 1123345779999974 9999
Q ss_pred ECCCeEEEEeCCCC
Q 008939 502 CREGHIKIWMRPGV 515 (548)
Q Consensus 502 s~Dg~I~iW~~~~~ 515 (548)
+.||.+++|++...
T Consensus 324 ~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 324 PHTRMIETFKVVFD 337 (355)
T ss_dssp TTTTEEEEEEEEEE
T ss_pred eCCCeEEEEEEEcC
Confidence 99999999997643
No 108
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=4.3e-30 Score=264.78 Aligned_cols=262 Identities=13% Similarity=0.223 Sum_probs=215.4
Q ss_pred ccccCCCCCCceeEEeCCC-CCEEEEecCC-eEEEEEccC--------CCCCCeEEEecCCCCceEEEecCCCCCCc-eE
Q 008939 123 SLGASSSSTSMTNTNFDGK-GTYIIFNVGD-AIFISDLNS--------QDKDPIKSIHFSNSNPVCHAFDQDAKDGH-DL 191 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~-g~~l~~~~~d-~v~vwd~~~--------~~~~~i~~~~~~~~~~~~~~~~p~~~~~~-~l 191 (548)
.....+|.+.|.+++|+|+ +.++++++.+ .|+|||+.. +...++..+..|...+.+++|+|+ +. +|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~~l 197 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPN---LNGYL 197 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTT---STTEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCC---CCCeE
Confidence 3455678999999999998 6778887777 999999986 224578888889999999999998 55 89
Q ss_pred EEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcc
Q 008939 192 LIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFP 271 (548)
Q Consensus 192 ~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 271 (548)
++|+.||.|++||+..... ....... ......|...|.+++|+|++..+|++++.||.|++||++....
T Consensus 198 ~s~~~dg~i~vwd~~~~~~--~~~~~~~---~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~------ 266 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPK--EHRVIDA---KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT------ 266 (430)
T ss_dssp EEECTTSCEEEEETTSCCB--GGGEEEC---SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS------
T ss_pred EEEeCCCeEEEEeCCCCCC--CCceecc---ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC------
Confidence 9999999999999986211 1111100 0011237889999999996555999999999999999986321
Q ss_pred cccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCC-CeEEEeeeecCCceEEEEE
Q 008939 272 VIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSK-EQLICGGKSYYGALLCCAW 349 (548)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~~~v~~l~~ 349 (548)
..++..+..|...|++++|+|+++ +|++++.||.|++||+++ .+.+..+..|...|.+++|
T Consensus 267 -----------------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~ 329 (430)
T 2xyi_A 267 -----------------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 329 (430)
T ss_dssp -----------------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEE
T ss_pred -----------------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEE
Confidence 235666778889999999999886 789999999999999997 5667888889999999999
Q ss_pred ccCCC-EEEEEeCCCeEEEEECCC--------------ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeE-EEEE
Q 008939 350 SMDGK-YILTGGEDDLVQVWSMED--------------RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY-RFGS 413 (548)
Q Consensus 350 spdg~-~l~sgs~dg~I~vwd~~~--------------~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~-~l~s 413 (548)
+|+++ +|++++.|+.|+|||+.. .+.+..+.+|...|++++|+| ++ . +|++
T Consensus 330 sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-------~~------~~~l~s 396 (430)
T 2xyi_A 330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-------NE------PWIICS 396 (430)
T ss_dssp CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS-------SS------TTEEEE
T ss_pred CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC-------CC------CCEEEE
Confidence 99995 799999999999999987 367778889999999999999 77 5 8999
Q ss_pred EeCCCeEEEEECCCC
Q 008939 414 VGQDTRLLLWDLEMD 428 (548)
Q Consensus 414 ~~~Dg~i~lwd~~~~ 428 (548)
++.|+.|++|++...
T Consensus 397 ~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 397 VSEDNIMQVWQMAEN 411 (430)
T ss_dssp EETTSEEEEEEECHH
T ss_pred EECCCCEEEeEcccc
Confidence 999999999998754
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=4.3e-30 Score=255.47 Aligned_cols=269 Identities=10% Similarity=0.079 Sum_probs=223.1
Q ss_pred ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
.|...|++++|+|++. +|++++.||.|++||+..... ..+...+..|...|.+++|
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~-----------------------~~~~~~~~~~~~~v~~~~~ 64 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAK-----------------------NVDLLQSLRYKHPLLCCNF 64 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTT-----------------------EEEEEEEEECSSCEEEEEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCc-----------------------cccceeeeecCCceEEEEE
Confidence 4899999999999998 999999999999999986210 1124455678899999999
Q ss_pred CCCCC-EEEEEECCCeEEEEeC-CCCeEEEeeee--cCCceEEEEEccCCCEEEEEeCCCeEEEEECCC---------ce
Q 008939 308 STDGT-YLATVGRDGYLRVFDY-SKEQLICGGKS--YYGALLCCAWSMDGKYILTGGEDDLVQVWSMED---------RK 374 (548)
Q Consensus 308 sp~g~-~l~s~~~dg~v~vwd~-~~~~~~~~~~~--~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~---------~~ 374 (548)
+|+++ +|++++.||.|++||+ .+++. ..+.. |...|.+++|+| +++|++++.|+.|++||+++ ++
T Consensus 65 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 142 (342)
T 1yfq_A 65 IDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142 (342)
T ss_dssp EESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred CCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC
Confidence 99999 9999999999999999 87765 56777 999999999999 99999999999999999998 77
Q ss_pred eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC-CeEEe---eeecCCCCCCceecC-CC
Q 008939 375 VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM-DEIVV---PLRRGPLGGSPTFST-GS 449 (548)
Q Consensus 375 ~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~-~~~~~---~~~~~~~~~~~~~~~-~~ 449 (548)
++..+. |...|.+++|+| + .+++++.|+.|++||+++ +.... .......+..+.+++ ++
T Consensus 143 ~~~~~~-~~~~v~~~~~~~-------~--------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 206 (342)
T 1yfq_A 143 NSNNTK-VKNKIFTMDTNS-------S--------RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ 206 (342)
T ss_dssp CSSSSS-SCCCEEEEEECS-------S--------EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred eeeEEe-eCCceEEEEecC-------C--------cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC
Confidence 777777 999999999998 4 399999999999999998 54321 112224455666766 54
Q ss_pred CccccCCeeeecccCCCCceeecCCC------CceEEeecCCC---------CeeEEEEeCCe--EEEEECCCeEEEEeC
Q 008939 450 QSAHWDNVCPVGTLQPAPSMRDVPKL------SPLVAHRVHTE---------PLSGLIFTQES--VLTVCREGHIKIWMR 512 (548)
Q Consensus 450 ~~~~~d~~~~~g~~~~~~~~~d~~~~------~~~~~~~~h~~---------~V~~l~fspd~--l~t~s~Dg~I~iW~~ 512 (548)
..+.++..++.+++|++... .++..+..|.. .|++++|+|+. |++++.||.|++||+
T Consensus 207 ------~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 207 ------EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp ------CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred ------CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 46678888999999999876 88888988866 99999999974 999999999999999
Q ss_pred CCCCc--cccCC-CCcEEEecCCCCceEeeecccc
Q 008939 513 PGVAE--SQSSS-SETVLSTSSKDKPLLSSKVVTS 544 (548)
Q Consensus 513 ~~~~~--~~~~~-~~~v~~~s~d~~~l~s~~~~g~ 544 (548)
..... ....| ...+.++.|++++|+++...|.
T Consensus 281 ~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 281 QTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDT 315 (342)
T ss_dssp TTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTH
T ss_pred ccHhHhhhhhcccCCCceEecCCCCeEEEEecCCc
Confidence 87663 23355 7778766699999999987765
No 110
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-30 Score=287.01 Aligned_cols=257 Identities=17% Similarity=0.255 Sum_probs=213.4
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
...+|.+.|.+++|+|+|+++++++.| .|+|||+..+....+..+..|...|.+++|+|+. ++.+|++|+.||.|++|
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVLIW 82 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-SCSEEEEEETTSCEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-CCCEEEEEeCCCeEEEE
Confidence 346899999999999999999998877 9999999854455778888899999999999863 26789999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
|++.... ..... . ..|...|++++|+|+ +. +|++|+.||.|++||++...
T Consensus 83 d~~~~~~---~~~~~-~------~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~----------------- 134 (753)
T 3jro_A 83 KEENGRW---SQIAV-H------AVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENG----------------- 134 (753)
T ss_dssp EEETTEE---EEEEE-E------CCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSS-----------------
T ss_pred ECCCCcc---ccccc-c------cCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCC-----------------
Confidence 9986210 01111 1 137899999999999 77 99999999999999998632
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECC-------------CCCEEEEEECCCeEEEEeCCCC----eEEEeeeecCCce
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFST-------------DGTYLATVGRDGYLRVFDYSKE----QLICGGKSYYGAL 344 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp-------------~g~~l~s~~~dg~v~vwd~~~~----~~~~~~~~~~~~v 344 (548)
......+..|...|.+++|+| ++.+|++++.||.|++||++++ .++..+.+|...|
T Consensus 135 -------~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V 207 (753)
T 3jro_A 135 -------TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207 (753)
T ss_dssp -------CCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred -------CcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE
Confidence 123445667889999999999 5899999999999999999876 5667788899999
Q ss_pred EEEEEccC---CCEEEEEeCCCeEEEEECCCce-----eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC
Q 008939 345 LCCAWSMD---GKYILTGGEDDLVQVWSMEDRK-----VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416 (548)
Q Consensus 345 ~~l~~spd---g~~l~sgs~dg~I~vwd~~~~~-----~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~ 416 (548)
.+++|+|+ +++|++++.|+.|++||+++++ .+.....|...|++++|+| +| .+|++++.
T Consensus 208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-------dg------~~l~s~s~ 274 (753)
T 3jro_A 208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-------SG------NVLALSGG 274 (753)
T ss_dssp EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT-------TT------CCEEEECS
T ss_pred EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC-------CC------CEEEEEcC
Confidence 99999999 8999999999999999999864 3344456899999999999 98 78999999
Q ss_pred CCeEEEEECCCCeE
Q 008939 417 DTRLLLWDLEMDEI 430 (548)
Q Consensus 417 Dg~i~lwd~~~~~~ 430 (548)
||.|++||+..+..
T Consensus 275 Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 275 DNKVTLWKENLEGK 288 (753)
T ss_dssp SSCEECCBCCSSSC
T ss_pred CCEEEEEecCCCCC
Confidence 99999999986543
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=4.8e-29 Score=250.14 Aligned_cols=278 Identities=9% Similarity=0.119 Sum_probs=200.2
Q ss_pred EEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceE
Q 008939 155 ISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCT 234 (548)
Q Consensus 155 vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 234 (548)
||++.. ..++.....|...+.|++|+|+ +.+|++|+.+| +++||+.. .+.... . +...+.
T Consensus 3 i~s~~~--~~~~~~~~~h~~~V~~v~fs~d---g~~la~g~~~~-~~iw~~~~-----~~~~~~-~--------~~~~~~ 62 (355)
T 3vu4_A 3 LGSMIT--RNPIVPENHVSNPVTDYEFNQD---QSCLILSTLKS-FEIYNVHP-----VAHIMS-Q--------EMRHLS 62 (355)
T ss_dssp ------------------CCCCCEEEECTT---SSEEEEECSSE-EEEEEETT-----EEEEEE-E--------ECSCCC
T ss_pred cccccc--cCCccccccCCCceEEEEECCC---CCEEEEEcCCE-EEEEecCC-----cceeee-e--------ecCCeE
Confidence 566666 3477777778999999999999 77888887765 78999765 121111 1 122478
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEE
Q 008939 235 SVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYL 314 (548)
Q Consensus 235 ~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l 314 (548)
.++|.++++.++++++.|+.|++||+.+. .++..+. |...|.+++|+++. +
T Consensus 63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~--------------------------~~~~~~~-~~~~v~~v~~~~~~--~ 113 (355)
T 3vu4_A 63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKK--------------------------QDVSRIK-VDAPVKDLFLSREF--I 113 (355)
T ss_dssp EEEECTTSSEEEEECSSTTEEEEEETTTT--------------------------EEEEEEE-CSSCEEEEEECSSE--E
T ss_pred EEEEcCCCCEEEEEECCccEEEEEECCCC--------------------------cEEEEEE-CCCceEEEEEcCCE--E
Confidence 88999988844577888999999998762 2334444 45789999998864 4
Q ss_pred EEEECCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccCCCEEEE--EeCCCeEEEEECCCce----------------e
Q 008939 315 ATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGKYILT--GGEDDLVQVWSMEDRK----------------V 375 (548)
Q Consensus 315 ~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~s--gs~dg~I~vwd~~~~~----------------~ 375 (548)
+++ .|+.|++||+.++ +.+..+.. ....+++++ .++++ |+.||.|++||+++++ +
T Consensus 114 ~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~ 187 (355)
T 3vu4_A 114 VVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGK 187 (355)
T ss_dssp EEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------C
T ss_pred EEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcc
Confidence 444 4889999999988 66666654 445567777 56666 5789999999999865 2
Q ss_pred EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCe-EEEEECCCCeEEeeeecCCCCCCceecCCCCcccc
Q 008939 376 VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR-LLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHW 454 (548)
Q Consensus 376 ~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (548)
+..+.+|...|++++|+| || .+|++++.|++ |++||+++++++..+..
T Consensus 188 ~~~~~~h~~~v~~~~~s~-------~g------~~l~s~s~d~~~v~iwd~~~~~~~~~~~~------------------ 236 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVRLNR-------KS------DMVATCSQDGTIIRVFKTEDGVLVREFRR------------------ 236 (355)
T ss_dssp CEEECCCSSCEEEEEECT-------TS------SEEEEEETTCSEEEEEETTTCCEEEEEEC------------------
T ss_pred cEEEEccCCceEEEEECC-------CC------CEEEEEeCCCCEEEEEECCCCcEEEEEEc------------------
Confidence 678899999999999999 99 79999999998 99999999887765542
Q ss_pred CCeeeecccCCCCceeecCCCCceEEeec-CCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCcccc-----------
Q 008939 455 DNVCPVGTLQPAPSMRDVPKLSPLVAHRV-HTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQS----------- 520 (548)
Q Consensus 455 d~~~~~g~~~~~~~~~d~~~~~~~~~~~~-h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~~----------- 520 (548)
+ |...|++++|+|+ .|++++.|++|++||+........
T Consensus 237 ----------------------------g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 237 ----------------------------GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp ----------------------------TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred ----------------------------CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence 3 8899999999997 499999999999999875431100
Q ss_pred ----------------CCCCcEEEecCCCCceEeeecccccc
Q 008939 521 ----------------SSSETVLSTSSKDKPLLSSKVVTSSY 546 (548)
Q Consensus 521 ----------------~~~~~v~~~s~d~~~l~s~~~~g~~~ 546 (548)
.....++++++|+++|+++...|.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~ 330 (355)
T 3vu4_A 289 FQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIE 330 (355)
T ss_dssp CCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEE
T ss_pred cccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEE
Confidence 01125679999999999998776543
No 112
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=5.3e-29 Score=249.60 Aligned_cols=271 Identities=11% Similarity=0.171 Sum_probs=216.9
Q ss_pred ccCcceEEEEEecCC---CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEE
Q 008939 228 VNNSRCTSVTWVPGG---DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINS 304 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (548)
.|...|++++|+|++ . +|++|+.||.|++||+...+ ......+..|...|.+
T Consensus 37 ~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~------------------------~~~~~~~~~h~~~v~~ 91 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSG------------------------QTIPKAQQMHTGPVLD 91 (368)
T ss_dssp CCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTS------------------------CEEEEEEEECSSCEEE
T ss_pred CCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCC------------------------ceeEEEeccccCCEEE
Confidence 489999999999995 6 99999999999999998521 1223677889999999
Q ss_pred EEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEE--ccCCCEEEEEeCCCeEEEEECCCceeEEeccCC
Q 008939 305 IAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAW--SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH 382 (548)
Q Consensus 305 ~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~--spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h 382 (548)
++|+|++++|++++.||.|++||+++++.+. +..|...|.+++| +|++++|++++.|+.|++||+++++++..+..|
T Consensus 92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred EEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC
Confidence 9999999999999999999999999998776 5669999999999 899999999999999999999999988888865
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC---CCCCCceecCCCCccccCCeee
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG---PLGGSPTFSTGSQSAHWDNVCP 459 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~~ 459 (548)
. .+.++.+.+ ..+++++.|+.+++||++........... .....+.+...... ....+.
T Consensus 171 ~-~~~~~~~~~---------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 232 (368)
T 3mmy_A 171 E-RCYCADVIY---------------PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN--KPTGFA 232 (368)
T ss_dssp S-CEEEEEEET---------------TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS--CEEEEE
T ss_pred C-CceEEEecC---------------CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC--CCCeEE
Confidence 4 677777765 36888889999999999887554333221 11122222222210 112267
Q ss_pred ecccCCCCceeecCCC---CceEEeecCCC------------CeeEEEEeCC--eEEEEECCCeEEEEeCCCCCc--ccc
Q 008939 460 VGTLQPAPSMRDVPKL---SPLVAHRVHTE------------PLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--SQS 520 (548)
Q Consensus 460 ~g~~~~~~~~~d~~~~---~~~~~~~~h~~------------~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~--~~~ 520 (548)
.+..++.+++|++... .++..+.+|.. .|++++|+|+ .|++++.||.|++||+..... ...
T Consensus 233 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE 312 (368)
T ss_dssp EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence 8888999999999887 56778888876 7999999997 499999999999999987653 233
Q ss_pred CCCCcEE--EecCCCCceEeeecc
Q 008939 521 SSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 521 ~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
.|...+. +|+||+++|+++...
T Consensus 313 ~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 313 QLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp CCSSCEEEEEECTTSSCEEEEECC
T ss_pred CCCCCceEEEECCCCCeEEEEecc
Confidence 5666665 889999999999765
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=5.6e-28 Score=245.19 Aligned_cols=330 Identities=17% Similarity=0.161 Sum_probs=247.3
Q ss_pred EEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceE-EEEEcCCcEEEEEeeecccccccceeeeee
Q 008939 144 YIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDL-LIGLNSGDVYSVSLRQQLQDVGKKLVGAHH 221 (548)
Q Consensus 144 ~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l-~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~ 221 (548)
++++++.+ .|++||+.++. .+..+..+ ..+.+++|+|+ +..| +++..++.|++||+.+. ++.....
T Consensus 4 l~vs~~~d~~v~v~d~~~~~--~~~~~~~~-~~~~~~~~s~d---g~~l~~~~~~d~~i~v~d~~~~------~~~~~~~ 71 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNK--VTATIPVG-SNPMGAVISPD---GTKVYVANAHSNDVSIIDTATN------NVIATVP 71 (391)
T ss_dssp EEEEETTTTEEEEEETTTTE--EEEEEECS-SSEEEEEECTT---SSEEEEEEGGGTEEEEEETTTT------EEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCe--EEEEeecC-CCcceEEECCC---CCEEEEECCCCCeEEEEECCCC------eEEEEEE
Confidence 45556655 99999999754 67777655 46999999999 6666 56668999999998751 2222222
Q ss_pred eccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCC
Q 008939 222 YNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS 301 (548)
Q Consensus 222 ~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 301 (548)
+...+.+++|+|+++.+++++..|+.|++||+... ..+..+.. ...
T Consensus 72 -------~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~--------------------------~~~~~~~~-~~~ 117 (391)
T 1l0q_A 72 -------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN--------------------------TVAGTVKT-GKS 117 (391)
T ss_dssp -------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--------------------------EEEEEEEC-SSS
T ss_pred -------CCCCccceEECCCCCEEEEEECCCCEEEEEECCCC--------------------------eEEEEEeC-CCC
Confidence 24489999999999944456667899999999862 12223332 357
Q ss_pred eEEEEECCCCCEE-EEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEE-EEEeCCCeEEEEECCCceeEEec
Q 008939 302 INSIAFSTDGTYL-ATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI-LTGGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 302 v~~~~~sp~g~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l-~sgs~dg~I~vwd~~~~~~~~~~ 379 (548)
+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+ ..+.+++|+|++++| ++++.|+.|++||+++++.+..+
T Consensus 118 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 196 (391)
T 1l0q_A 118 PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV 196 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 8999999999977 67778999999999999988887765 457999999999987 57778999999999999888777
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe---CCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCC
Q 008939 380 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG---QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDN 456 (548)
Q Consensus 380 ~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~---~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 456 (548)
. +...+.+++|+| +| .+|++++ .|+.|++||+++++.+..+..+.....+.+++++. .
T Consensus 197 ~-~~~~~~~~~~~~-------~g------~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~-----~ 257 (391)
T 1l0q_A 197 K-VEAAPSGIAVNP-------EG------TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGK-----K 257 (391)
T ss_dssp E-CSSEEEEEEECT-------TS------SEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSS-----E
T ss_pred e-cCCCccceEECC-------CC------CEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCC-----E
Confidence 6 667899999999 88 5677766 68999999999999988887765556677777652 1
Q ss_pred eeeecccCCCCceeecCCCCceEEeecCCCCee---EEE------------EeCC------------eEEEEECCCeEEE
Q 008939 457 VCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLS---GLI------------FTQE------------SVLTVCREGHIKI 509 (548)
Q Consensus 457 ~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~---~l~------------fspd------------~l~t~s~Dg~I~i 509 (548)
.+..+..+..+++||+...+.+..+..|..+.. .+. |+.+ .+...+.|..+++
T Consensus 258 l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (391)
T 1l0q_A 258 VYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWK 337 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEE
T ss_pred EEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEE
Confidence 224556778899999999888888877755421 122 2221 1556678899999
Q ss_pred EeCCCCCccccCCCCcEEEecCCCCceEeeec
Q 008939 510 WMRPGVAESQSSSSETVLSTSSKDKPLLSSKV 541 (548)
Q Consensus 510 W~~~~~~~~~~~~~~~v~~~s~d~~~l~s~~~ 541 (548)
|++..+.. ..+......++++|.+.++.+.
T Consensus 338 W~~~~g~~--~~~~~~~~~~~~~g~y~~~~~~ 367 (391)
T 1l0q_A 338 WDFGDGSS--SKKQNPTHTYSETGIYTVRLTV 367 (391)
T ss_dssp EECSSSCE--ECSSSCEECCSSCEEEEEEEEE
T ss_pred EECCCCcc--cCcCCCeEEeCCCceEEEEEEE
Confidence 99976553 2334455678888888776653
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-29 Score=278.16 Aligned_cols=255 Identities=17% Similarity=0.290 Sum_probs=207.2
Q ss_pred EEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC--CCc
Q 008939 167 KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--GDG 244 (548)
Q Consensus 167 ~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~--~~~ 244 (548)
..+..|...|++++|+|+ +.+|++|+.||.|++||+.... .+ ..... ..|...|++++|+|+ +.
T Consensus 3 ~~l~gH~~~V~~l~~s~d---g~~latg~~dg~I~vwd~~~~~---~~-~~~~l------~~h~~~V~~l~~s~~~~~~- 68 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYY---GKRLATCSSDKTIKIFEVEGET---HK-LIDTL------TGHEGPVWRVDWAHPKFGT- 68 (753)
T ss_dssp -----CCCCEEEECCCSS---SCCEEEEETTTEEEEEEEETTE---EE-EEEEE------CCCSSCEEEEEECCTTSCS-
T ss_pred eecccCcceeEEEEECCC---CCeEEEEECCCcEEEEecCCCC---Cc-cceec------cCCcCceEEEEecCCCCCC-
Confidence 345678899999999998 7899999999999999987411 11 11111 148899999999988 77
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC--CCEEEEEECCCe
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRDGY 322 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~~~dg~ 322 (548)
+|++|+.||.|++||+.... ...+..+..|...|.+++|+|+ +++|++++.||.
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~------------------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~ 124 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGR------------------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124 (753)
T ss_dssp EEEEEETTSCEEEEEEETTE------------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred EEEEEeCCCeEEEEECCCCc------------------------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc
Confidence 99999999999999988621 1245666778899999999998 999999999999
Q ss_pred EEEEeCCCCe--EEEeeeecCCceEEEEEcc-------------CCCEEEEEeCCCeEEEEECCCc----eeEEeccCCC
Q 008939 323 LRVFDYSKEQ--LICGGKSYYGALLCCAWSM-------------DGKYILTGGEDDLVQVWSMEDR----KVVAWGEGHN 383 (548)
Q Consensus 323 v~vwd~~~~~--~~~~~~~~~~~v~~l~~sp-------------dg~~l~sgs~dg~I~vwd~~~~----~~~~~~~~h~ 383 (548)
|++||++++. ....+..|...|.+++|+| ++++|++|+.|+.|++||++++ .++..+.+|.
T Consensus 125 I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~ 204 (753)
T 3jro_A 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 204 (753)
T ss_dssp EEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred EEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCC
Confidence 9999998773 3445678999999999999 5899999999999999999876 5677888999
Q ss_pred CCeEEEEEecCCCCCCCC---CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeee
Q 008939 384 SWVSGVAFDSYWSQPNSD---GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 460 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~d---g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 460 (548)
..|.+++|+| + + .+|++++.|+.|++||+++++.....
T Consensus 205 ~~V~~l~~sp-------~~~~~------~~l~s~s~Dg~I~iwd~~~~~~~~~~-------------------------- 245 (753)
T 3jro_A 205 DWVRDVAWSP-------TVLLR------SYLASVSQDRTCIIWTQDNEQGPWKK-------------------------- 245 (753)
T ss_dssp SCEEEEEECC-------CCSSS------EEEEEEESSSCEEEEEESSSSSCCBC--------------------------
T ss_pred CcEEEEEecc-------CCCCC------CEEEEEecCCEEEEecCCCCCCccee--------------------------
Confidence 9999999999 8 7 79999999999999999875421100
Q ss_pred cccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 461 GTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 461 g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
.+.....|...|++++|+|++ |++++.||.|++|++..
T Consensus 246 ----------------~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 246 ----------------TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ----------------CBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred ----------------EEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 111123578899999999974 99999999999999874
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=8e-29 Score=239.41 Aligned_cols=276 Identities=12% Similarity=0.068 Sum_probs=191.5
Q ss_pred eEEeCCCCC---EEEEecCCeEEEEEccCC-CCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc
Q 008939 135 NTNFDGKGT---YIIFNVGDAIFISDLNSQ-DKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ 210 (548)
Q Consensus 135 ~~~~~~~g~---~l~~~~~d~v~vwd~~~~-~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~ 210 (548)
.+-|-..|- .|++++...|++|+..+. +.+.+++.+|+...|..++|.|+..+ ++.++.-+ +.+=+++.-.-
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~--~~~~~v~sla~ 119 (356)
T 2w18_A 44 AMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN--LVCVALGN--LEIREIRALFC 119 (356)
T ss_dssp EEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS--CEEEEECS--SSEEEEEEECC
T ss_pred eeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc--eeeeeecc--ccccceEEEEE
Confidence 444444333 677788889999998875 23689999999999999999998654 44444332 22222221111
Q ss_pred ccc----cceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 211 DVG----KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH--ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 211 ~~~----~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
.+. ++..... .|...|..+ ++++ ++.++. .|+.|++|++..++
T Consensus 120 spd~~~~~~~l~s~-------g~~~~v~~l---~~g~-lv~ss~~g~d~~V~~~~~s~dG-------------------- 168 (356)
T 2w18_A 120 SSDDESEKQVLLKS-------GNIKAVLGL---TKRR-LVSSSGTLSDQQVEVMTFAEDG-------------------- 168 (356)
T ss_dssp ------CCEEEEEE-------EEEEEEEEE---TTTE-EEEEESSSTTCEEEEEEECTTS--------------------
T ss_pred CCCccccccEEEeC-------CCeEEEEec---CCCc-EEEecccCCCCcEEEEEECCCC--------------------
Confidence 111 1111110 123334443 4443 444422 48888888885432
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECC---CCCEEEEEECCCeEEEEeCCCCeEEEeeeecC---CceEEEEEccCCCEE--
Q 008939 285 RYSKSNPIARWHICQGSINSIAFST---DGTYLATVGRDGYLRVFDYSKEQLICGGKSYY---GALLCCAWSMDGKYI-- 356 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp---~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~---~~v~~l~~spdg~~l-- 356 (548)
+.+..+..|...+..++|++ ++.+|++++.|++|+|||+++++++.++.+|. ..+.+++|+|+|+++
T Consensus 169 -----~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs 243 (356)
T 2w18_A 169 -----GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIV 243 (356)
T ss_dssp -----CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEE
T ss_pred -----ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEE
Confidence 34556678888999999999 77999999999999999999999999998654 367788999999876
Q ss_pred ----------EEEeCCCeEEEEECCCceeEEec-----cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 357 ----------LTGGEDDLVQVWSMEDRKVVAWG-----EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 357 ----------~sgs~dg~I~vwd~~~~~~~~~~-----~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
++|+.|++|++||..+++.+..+ .+|...+.+..+ ++ .++++++.|++|+
T Consensus 244 ~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---------sg------~~lASgS~DgTIk 308 (356)
T 2w18_A 244 LSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---------KD------HCAAAILTSGTIA 308 (356)
T ss_dssp EC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---------ET------TEEEEEETTSCEE
T ss_pred eccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---------CC------CEEEEEcCCCcEE
Confidence 56888999999999999887655 367666554444 33 5899999999999
Q ss_pred EEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCee-EEEEeCC--eE
Q 008939 422 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLS-GLIFTQE--SV 498 (548)
Q Consensus 422 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~-~l~fspd--~l 498 (548)
|||+.+++++.++. +|...+. .++|+|| .|
T Consensus 309 IWDl~tGk~l~tL~-----------------------------------------------gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 309 IWDLLLGQCTALLP-----------------------------------------------PVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp EEETTTCSEEEEEC-----------------------------------------------CC--CCCCEEEECSSSSEE
T ss_pred EEECCCCcEEEEec-----------------------------------------------CCCCCeEEEEEECCCCCEE
Confidence 99999999877654 4665544 6899998 49
Q ss_pred EEEECCCeEEEEeC
Q 008939 499 LTVCREGHIKIWMR 512 (548)
Q Consensus 499 ~t~s~Dg~I~iW~~ 512 (548)
++|+.|++|||||+
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999995
No 116
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-29 Score=252.37 Aligned_cols=238 Identities=11% Similarity=0.095 Sum_probs=183.3
Q ss_pred EEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecc--ccc
Q 008939 136 TNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQL--QDV 212 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~--~~~ 212 (548)
..+.+++.++++++.| .|++||++++. .+..+. ...+.++.|+|. +++++.|+.|++|+..... .+.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~--~~~~~~--~~~v~~~~~~~~------~~s~s~D~~i~~w~~~~~~~~~~~ 111 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSK--TITTIT--TPNPRTGGEHPA------IISRGPCNRLLLLYPGNQITILDS 111 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSS--CEEEEE--EECCCTTCCCCS------EEEECSTTEEEEEETTTEEEEEET
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCc--EEEEEe--cCCceeeeeCCc------eEEecCCCeEEEEEccCceEEeec
Confidence 3445678889998888 99999999855 676666 346777788876 9999999999999877421 010
Q ss_pred -ccceeeeeeeccCCcccCcceEEEEEec--CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 213 -GKKLVGAHHYNKDGSVNNSRCTSVTWVP--GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 213 -~~~~~~~~~~~~~~~~~~~~v~~l~~~p--~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
...+..... ..|...|.+++|+| ++. +|++++.||.|++||++...
T Consensus 112 ~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~------------------------- 160 (343)
T 3lrv_A 112 KTNKVLREIE-----VDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDS------------------------- 160 (343)
T ss_dssp TTCCEEEEEE-----CCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSC-------------------------
T ss_pred CCcceeEEee-----cCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCc-------------------------
Confidence 111111110 12567899999999 888 99999999999999998621
Q ss_pred CCeeEe-eecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE-Eeeee-cCCceEEEEEccCCCEEEEEeCCCeEE
Q 008939 290 NPIARW-HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI-CGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQ 366 (548)
Q Consensus 290 ~~~~~~-~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~-~~~~~-~~~~v~~l~~spdg~~l~sgs~dg~I~ 366 (548)
.+... ..|...|.+++|+|++++|++|+.||.|++||+++++.+ ..+.. |.+.|.+++|+|++.+|+++++ +.|+
T Consensus 161 -~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~ 238 (343)
T 3lrv_A 161 -QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVV 238 (343)
T ss_dssp -EEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEE
T ss_pred -EEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEE
Confidence 12222 223467999999999999999999999999999999877 77887 9999999999999999999994 5999
Q ss_pred EEECCCceeEEeccC---CCCCeE--EEEEecCCCCCCCCCCccceeEEEEEEeC-CCeEEEEECCCCe
Q 008939 367 VWSMEDRKVVAWGEG---HNSWVS--GVAFDSYWSQPNSDGTAETVMYRFGSVGQ-DTRLLLWDLEMDE 429 (548)
Q Consensus 367 vwd~~~~~~~~~~~~---h~~~V~--~v~~~p~~~~~~~dg~~~~~~~~l~s~~~-Dg~i~lwd~~~~~ 429 (548)
+||+++.+.+..+.. |...+. +++|+| +| .+|++++. |+.|++|++....
T Consensus 239 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g------~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 239 CFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-------SG------KNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp EEETTSSTTCBSSCCCBC-----CCEEEEECT-------TS------SEEEEEETTTTEEEEEEECTTT
T ss_pred EEEcCCCCcceeecccccccccccceEEEECC-------CC------CEEEEecCCCCcEEEEEEcccc
Confidence 999999877655543 444444 699999 98 78999888 9999999987643
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.9e-28 Score=250.87 Aligned_cols=249 Identities=15% Similarity=0.117 Sum_probs=183.4
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee--ecCCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH--ICQGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~ 306 (548)
|...|++++|+|++..++++++.||.|++||+.... ...+..+. .|...|.+++
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~------------------------~~~~~~~~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS------------------------KNVLKLRKRFCFSKRPNAIS 156 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS------------------------SSCEEEEEEEECSSCEEEEE
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC------------------------CceeeeeecccCCCCceEEE
Confidence 455799999999999335899999999999998210 12344443 5668899999
Q ss_pred ECCCCCEEEEEECCCeEEEEeCCCCeEEE----eeeecCCceEEEEEccC---CCEEEEEeCCCeEEEEECCCceeEEe-
Q 008939 307 FSTDGTYLATVGRDGYLRVFDYSKEQLIC----GGKSYYGALLCCAWSMD---GKYILTGGEDDLVQVWSMEDRKVVAW- 378 (548)
Q Consensus 307 ~sp~g~~l~s~~~dg~v~vwd~~~~~~~~----~~~~~~~~v~~l~~spd---g~~l~sgs~dg~I~vwd~~~~~~~~~- 378 (548)
|+|++++|++++.||.|++|++.+++... .+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++++..
T Consensus 157 ~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 157 IAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE
T ss_pred EcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee
Confidence 99999999999999999999998876544 67889999999999999 99999999999999999999988777
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCee
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVC 458 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 458 (548)
+.+|...|.+++|+ ++ .+|++++.|+.|++||+++++++..+........+.+.....
T Consensus 237 ~~~h~~~v~~~~~s--------d~------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 294 (450)
T 2vdu_B 237 LFGHKHFVSSICCG--------KD------YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLA-------- 294 (450)
T ss_dssp CCCCSSCEEEEEEC--------ST------TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC--------
T ss_pred ecCCCCceEEEEEC--------CC------CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccc--------
Confidence 66899999999996 44 589999999999999999999888776421111111100000
Q ss_pred eecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEE-CCCeEEEEeC--CCC---Cc--cccCCCCcEE-
Q 008939 459 PVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVC-REGHIKIWMR--PGV---AE--SQSSSSETVL- 527 (548)
Q Consensus 459 ~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s-~Dg~I~iW~~--~~~---~~--~~~~~~~~v~- 527 (548)
+..........+...|.+|+|+|+ .|++++ .|+.|++|++ ... .. ....+ ..+.
T Consensus 295 --------------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~ 359 (450)
T 2vdu_B 295 --------------PPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVIS 359 (450)
T ss_dssp ------------------------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEE
T ss_pred --------------cccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEE
Confidence 000000001123567999999997 488888 8999999999 433 11 11233 5555
Q ss_pred -EecCCCCceEee
Q 008939 528 -STSSKDKPLLSS 539 (548)
Q Consensus 528 -~~s~d~~~l~s~ 539 (548)
+++|++ .+++.
T Consensus 360 ~~~~~~~-~~v~~ 371 (450)
T 2vdu_B 360 LSAHNDE-FQVTL 371 (450)
T ss_dssp EEEETTE-EEEEE
T ss_pred EEecCCc-EEEEE
Confidence 677854 44443
No 118
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=8e-28 Score=236.34 Aligned_cols=251 Identities=17% Similarity=0.291 Sum_probs=206.8
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
.+...+|...|.+++|+|+++++++++.| .|+|||+++++ .+..+..|...+.++.+.+ ..|++++.++.+.
T Consensus 60 ~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~--~~~~~~~h~~~~~~~~~~~-----~~l~s~~~~~~~~ 132 (318)
T 4ggc_A 60 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--RLRNMTSHSARVGSLSWNS-----YILSSGSRSGHIH 132 (318)
T ss_dssp EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEEET-----TEEEEEETTSEEE
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce--eEEEecCccceEEEeecCC-----CEEEEEecCCceE
Confidence 45567889999999999999999999888 99999999854 8888888888887776654 4899999999999
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
+|+.... ........ .|...+.++.|.+++. +|++++.|+.|++||+++....
T Consensus 133 ~~~~~~~-----~~~~~~~~------~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~--------------- 185 (318)
T 4ggc_A 133 HHDVRVA-----EHHVATLS------GHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGG--------------- 185 (318)
T ss_dssp EEETTSS-----SCEEEEEE------CCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTB---------------
T ss_pred eeecCCC-----ceeEEEEc------CccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCccc---------------
Confidence 9997652 12221111 3788999999999999 9999999999999999863211
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EE--EEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGT-YL--ATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l--~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 358 (548)
.........|.+.|.+++++|++. .+ ++++.++.|++||.+......... +...+..+.|+|+++.+++
T Consensus 186 -------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 186 -------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp -------SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred -------ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEE
Confidence 122344455678999999999654 33 456678999999999887766544 6678999999999998877
Q ss_pred Ee--CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 359 GG--EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 359 gs--~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
++ .|+.|++||+++++++..+.+|.+.|++|+|+| || .+|+|++.|+.|+|||+...
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-------dg------~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-------DG------ATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-------TS------SCEEEEETTTEEEEECCSCC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-------CC------CEEEEEecCCeEEEEECCCC
Confidence 65 799999999999999999999999999999999 99 78999999999999999754
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=3.7e-29 Score=254.60 Aligned_cols=308 Identities=10% Similarity=0.072 Sum_probs=194.5
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccce--eeeeee-----------ccC----CcccCcceEEE
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKL--VGAHHY-----------NKD----GSVNNSRCTSV 236 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~--~~~~~~-----------~~~----~~~~~~~v~~l 236 (548)
..+.++.|.....+...|+..+.++.|.+|+............ .....+ ... ...+...+...
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVN 95 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---------
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCccee
Confidence 4667777754433344566666788999998765211111000 000000 000 00122222223
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-------
Q 008939 237 TWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST------- 309 (548)
Q Consensus 237 ~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp------- 309 (548)
.+.+++. +|++++.|++|+|||++..... ...++..+.+|.+.|++++|+|
T Consensus 96 ~~~~~~~-~las~~~d~~v~lw~~~~~~~~---------------------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~ 153 (393)
T 4gq1_A 96 SSPVYSL-FLACVCQDNTVRLIITKNETII---------------------TQHVLGGKSGHHNFVNDIDIADVYSADNR 153 (393)
T ss_dssp -CCEEEE-EEEEEETTSCEEEEEEETTEEE---------------------EEEEECTTTSCSSCEEEEEEEEEECTTCS
T ss_pred ecCCCCC-EEEEEeCCCcEEEEECCCCccc---------------------eeeeecccCCCCCceEEEEEccccccccC
Confidence 3333444 8999999999999998762110 0112344678999999999997
Q ss_pred -CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCCceeEEe---------
Q 008939 310 -DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDRKVVAW--------- 378 (548)
Q Consensus 310 -~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~~~~~~~--------- 378 (548)
|+++||+++.|++|+|||++++..+..+..|...+.+++|+|++. +|++|+.|+.|++||+++++....
T Consensus 154 ~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~ 233 (393)
T 4gq1_A 154 LAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN 233 (393)
T ss_dssp EEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred CCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence 789999999999999999998888888888999999999999885 799999999999999987654322
Q ss_pred ----------------ccCCCCCeEEEEEe-cCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC-CC
Q 008939 379 ----------------GEGHNSWVSGVAFD-SYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP-LG 440 (548)
Q Consensus 379 ----------------~~~h~~~V~~v~~~-p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~-~~ 440 (548)
..+|...|.++.|. | || ..|++++.|+.+++||+..++....+.... ..
T Consensus 234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~-------dg------~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~ 300 (393)
T 4gq1_A 234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGS-------DG------SGILAMCKSGAWLRWNLFANNDYNEISDSTMKL 300 (393)
T ss_dssp CCSEEEESGGGC------CCSSSCSEEEEETT-------TT------CEEEEECTTSEEEEEEC----------------
T ss_pred ceEEecccccceeeeecccccccceeeeeecC-------CC------CEEEEEeCCCCEEEEECccCCCCceEeeecCcc
Confidence 23678889999987 5 88 789999999999999999887665554310 01
Q ss_pred CCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC----eEEEEECCCeEEEEeCCCCC
Q 008939 441 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE----SVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 441 ~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd----~l~t~s~Dg~I~iW~~~~~~ 516 (548)
....+ .........+.. +....|+|. .+++++.||.|+|||+..+.
T Consensus 301 ~~~~~-----------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 301 GPKNL-----------------------------LPNVQGISLFPS-LLGACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp ---CC-----------------------------SCSEEEECSSCC-SSCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred ccEEE-----------------------------ccccccccccCc-ceeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 11111 111222222333 333445552 36778899999999987765
Q ss_pred cc--ccCCCCcEE--EecCCCCceEeeecccccc
Q 008939 517 ES--QSSSSETVL--STSSKDKPLLSSKVVTSSY 546 (548)
Q Consensus 517 ~~--~~~~~~~v~--~~s~d~~~l~s~~~~g~~~ 546 (548)
.. ...+...|. +|+|||++||++...|..+
T Consensus 351 ~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~l 384 (393)
T 4gq1_A 351 SNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLL 384 (393)
T ss_dssp CCEEEEECSSCEEEEEECTTSSEEEEEESSEEEE
T ss_pred EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 32 335666776 8899999999998877543
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=9.5e-28 Score=246.96 Aligned_cols=308 Identities=10% Similarity=0.044 Sum_probs=235.3
Q ss_pred EEEEccC--CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCc
Q 008939 154 FISDLNS--QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNS 231 (548)
Q Consensus 154 ~vwd~~~--~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (548)
.||.++. +..+.+..+.. ...+.+++|+|+ +.+++++..++.|++||+.+. +.. .... ......|..
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~~---~~~~~~~~~~~~i~~~d~~~g-----~~~-~~~~-~~~~~~~~~ 170 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKT-GFQPKSVRFIDN---TRLAIPLLEDEGMDVLDINSG-----QTV-RLSP-PEKYKKKLG 170 (433)
T ss_dssp CEEECCBTTCSEEEEEEEEC-SSCBCCCEESSS---SEEEEEBTTSSSEEEEETTTC-----CEE-EECC-CHHHHTTCC
T ss_pred EEEEECCCCCcceEEEEEcC-CCCceEEEEeCC---CeEEEEeCCCCeEEEEECCCC-----eEe-eecC-cccccccCC
Confidence 4555443 32245555553 446779999995 778888888899999998752 211 1110 001123778
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC
Q 008939 232 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 311 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g 311 (548)
.|.+++|+|++. ++++++.|+.|++||++. ...+..+..|...+.+++|+|++
T Consensus 171 ~v~~~~~~~~~~-~~~s~~~d~~v~~~d~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~ 223 (433)
T 3bws_A 171 FVETISIPEHNE-LWVSQMQANAVHVFDLKT--------------------------LAYKATVDLTGKWSKILLYDPIR 223 (433)
T ss_dssp EEEEEEEGGGTE-EEEEEGGGTEEEEEETTT--------------------------CCEEEEEECSSSSEEEEEEETTT
T ss_pred ceeEEEEcCCCE-EEEEECCCCEEEEEECCC--------------------------ceEEEEEcCCCCCeeEEEEcCCC
Confidence 999999999988 999999999999999975 23455666778899999999999
Q ss_pred CEEEEEE-CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe--------CCCeEEEEECCCceeEEeccCC
Q 008939 312 TYLATVG-RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG--------EDDLVQVWSMEDRKVVAWGEGH 382 (548)
Q Consensus 312 ~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs--------~dg~I~vwd~~~~~~~~~~~~h 382 (548)
+++++++ .|+.|++||+++++.+..+..+ ..+.+++|+|++++|++++ .|+.|++||+++++.+..+. |
T Consensus 224 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~ 301 (433)
T 3bws_A 224 DLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-P 301 (433)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-E
T ss_pred CEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-C
Confidence 9886555 7999999999999988877654 5699999999999999888 58899999999998877664 6
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCcc---cc-----
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSA---HW----- 454 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----- 454 (548)
...+.+++|+| ++. .++++++.|+.|++||+.+++++..+........+++++++... ..
T Consensus 302 ~~~~~~~~~~~-------~g~-----~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 369 (433)
T 3bws_A 302 PGNKRHIVSGN-------TEN-----KIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHP 369 (433)
T ss_dssp EECEEEEEECS-------STT-----EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCT
T ss_pred CCCcceEEECC-------CCC-----EEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCcc
Confidence 67899999999 872 46677899999999999999998888766666778888876310 00
Q ss_pred -CCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEE-CCCeEEEEeCCC
Q 008939 455 -DNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVC-REGHIKIWMRPG 514 (548)
Q Consensus 455 -d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s-~Dg~I~iW~~~~ 514 (548)
...+..+..++.+.+||..+.+.+..+..+ ..+.+++|+|++ |++++ .|+.|++|++.+
T Consensus 370 ~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 370 TEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 112233444678999999998888888764 578999999984 77666 599999999863
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.5e-29 Score=248.45 Aligned_cols=236 Identities=9% Similarity=0.063 Sum_probs=179.5
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
+.+|++|+.||.|++||+.+ ++.+. .. ....|.++.|+|. +++++.|+.|++|+....-.
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~-----~~~~~-~~--------~~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~-- 107 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKD-----SKTIT-TI--------TTPNPRTGGEHPA----IISRGPCNRLLLLYPGNQIT-- 107 (343)
T ss_dssp EEEEEEEEETTEEEEEEESS-----SSCEE-EE--------EEECCCTTCCCCS----EEEECSTTEEEEEETTTEEE--
T ss_pred CCEEEEECCCCcEEEEECCC-----CcEEE-EE--------ecCCceeeeeCCc----eEEecCCCeEEEEEccCceE--
Confidence 67899999999999999986 22221 11 1356777888887 89999999999999864100
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEee-ecCCCeEEEEECC--CCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCc
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAFST--DGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGA 343 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp--~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~ 343 (548)
.+. ......+..+. .|.+.|.+++|+| ++++|++++.||.|++||+++++.+.... .+...
T Consensus 108 -~~~--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~ 172 (343)
T 3lrv_A 108 -ILD--------------SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE 172 (343)
T ss_dssp -EEE--------------TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred -Eee--------------cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence 000 00112233332 5668899999999 99999999999999999999998876653 34558
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCceeE-EeccC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 344 LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV-AWGEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 344 v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~-~~~~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
+.+++|+|++++|++|+.|+.|++||+++++.+ ..+.. |...|++++|+| +| .+|++++ |+.|+
T Consensus 173 i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~-------~g------~~l~s~~-~~~v~ 238 (343)
T 3lrv_A 173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD-------NG------YWMVVEC-DQTVV 238 (343)
T ss_dssp CCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT-------TS------SEEEEEE-SSBEE
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC-------CC------CEEEEEe-CCeEE
Confidence 999999999999999999999999999999877 78887 999999999999 98 7899999 55999
Q ss_pred EEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCe--eEEEEeCCe--
Q 008939 422 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPL--SGLIFTQES-- 497 (548)
Q Consensus 422 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V--~~l~fspd~-- 497 (548)
+||+++.+++..+.. +..|...+ .+++|+|++
T Consensus 239 iwd~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 239 CFDLRKDVGTLAYPT--------------------------------------------YTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp EEETTSSTTCBSSCC--------------------------------------------CBC-----CCEEEEECTTSSE
T ss_pred EEEcCCCCcceeecc--------------------------------------------cccccccccceEEEECCCCCE
Confidence 999998765433221 01122223 469999974
Q ss_pred EEEEEC-CCeEEEEeCCCCC
Q 008939 498 VLTVCR-EGHIKIWMRPGVA 516 (548)
Q Consensus 498 l~t~s~-Dg~I~iW~~~~~~ 516 (548)
|++++. |+.|++|++....
T Consensus 275 l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 275 MIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp EEEEETTTTEEEEEEECTTT
T ss_pred EEEecCCCCcEEEEEEcccc
Confidence 888888 9999999986543
No 122
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-29 Score=257.31 Aligned_cols=289 Identities=9% Similarity=0.030 Sum_probs=209.1
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
.+|...+..++|+|+| ..+.+.+|+.+. ..+..+. +...|.+++|+|+ |.+|++++.||.|++||..
T Consensus 49 ~gh~~~v~~V~FsPdg------~~~~~~~~~~~~---~~~~~~~-~~~~V~~vawSPd---G~~LAs~s~dg~V~iwd~~ 115 (588)
T 2j04_A 49 NCNSKNLFHVKEFPLE------FENKLDFELAQQ---NGLLNSQ-PVCYPRVCKPSPI---DDWMAVLSNNGNVSVFKDN 115 (588)
T ss_dssp SSBGGGTEEEEEECCC------CCCTTTTSCCCS---SCSSTTS-CSCCEEEEEECSS---SSCEEEEETTSCEEEEETT
T ss_pred cCCCccEEEEEECCCC------CcceEEEEeCCC---ceEeecC-CCCcEEEEEECCC---CCEEEEEeCCCcEEEEeCC
Confidence 4799999999999999 223444444332 2222222 3678999999999 8899999999999999954
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
. +..... .+.......|.+++|+|+|+ +|++|+.||+|++||+..+......
T Consensus 116 ~--------~l~~l~--~~~~~~~~sv~svafSPDG~-~LAsgs~DGtVkIWd~~~~~l~~~~----------------- 167 (588)
T 2j04_A 116 K--------MLTNLD--SKGNLSSRTYHCFEWNPIES-SIVVGNEDGELQFFSIRKNSENTPE----------------- 167 (588)
T ss_dssp E--------EEEECC--CSSCSTTTCEEEEEECSSSS-CEEEEETTSEEEEEECCCCTTTCCC-----------------
T ss_pred c--------eeeecc--CCCccccccEEEEEEcCCCC-EEEEEcCCCEEEEEECCCCcccccc-----------------
Confidence 3 111111 11111234699999999999 9999999999999999862100000
Q ss_pred CCCCCeeEe----eecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE---EEee-eecCCceEEEEEccCCCEEEE
Q 008939 287 SKSNPIARW----HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL---ICGG-KSYYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 287 ~~~~~~~~~----~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~---~~~~-~~~~~~v~~l~~spdg~~l~s 358 (548)
...+..+ .+|...|.+++|+||| |++++.|+.|++||+..++. ..++ .+|...|.+++|+ ++.||+
T Consensus 168 --~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LAS 241 (588)
T 2j04_A 168 --FYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVL 241 (588)
T ss_dssp --CEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEE
T ss_pred --ceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEE
Confidence 0013444 4566899999999999 88899999999999987763 3456 3788899999999 688999
Q ss_pred EeCCCeEEEEECCCceeEEeccCCCCCeEEEEE--ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF--DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 359 gs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~--~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
++ ++.|++||+.+++......+|.+.|..++| +| |+ ..|++++.||+ ++|.+..
T Consensus 242 a~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-------d~------~~La~a~edG~-klw~~d~--------- 297 (588)
T 2j04_A 242 TC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-------ES------TILLMSNKTSY-KVLLEDE--------- 297 (588)
T ss_dssp EC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-------SC------EEEEECSSCEE-EEEESSS---------
T ss_pred Ee-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-------CC------CEEEEEcCCCC-EEEeecc---------
Confidence 87 699999999988874444479999999999 99 98 79999999999 9999882
Q ss_pred CCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEE
Q 008939 437 GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVC 502 (548)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s 502 (548)
+.+++++.. ++..+..+++|+.... ++..+.+ ...|++++|+||+ +++++
T Consensus 298 ------~~~spd~~l--------~a~~d~~v~lW~~~g~-~l~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 298 ------LHVTADNII--------APYLEKKFKKWSTIWN-EFNNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ------EEEECCCSS--------HHHHHHHHHHTTTTTT-SSSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred ------EEECCCceE--------EEEcCCEEEEEECCCC-ceeeecc-ceEEEEEEECCCCCEEEEEE
Confidence 223444321 1112555666665322 2333433 5679999999996 66665
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=8.8e-29 Score=251.81 Aligned_cols=238 Identities=12% Similarity=0.090 Sum_probs=164.8
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec--------CCCcEEEEEeCCCcEEEEE
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP--------GGDGAFVVGHADGNLYVYE 259 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p--------~~~~~l~s~~~dg~v~vwd 259 (548)
+.+|++++.|+.|++||++.. . ... .........|...|++|+|+| +++ +|++++.|++|+|||
T Consensus 101 ~~~las~~~d~~v~lw~~~~~-----~-~~~-~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNE-----T-IIT-QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWR 172 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETT-----E-EEE-EEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCC-----c-cce-eeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEE
Confidence 567999999999999998862 1 111 111122345999999999998 666 999999999999999
Q ss_pred cCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCeEEEe--
Q 008939 260 KSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQLICG-- 336 (548)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~~~~~~~-- 336 (548)
+... .++..+..|...|.+++|+|++ .+|++++.|+.|++||+++++....
T Consensus 173 ~~~~--------------------------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~ 226 (393)
T 4gq1_A 173 LTDE--------------------------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS 226 (393)
T ss_dssp EETT--------------------------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------
T ss_pred CCCC--------------------------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc
Confidence 9762 3456667788999999999976 5899999999999999988754322
Q ss_pred -----------------------eeecCCceEEEEEc-cCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEe
Q 008939 337 -----------------------GKSYYGALLCCAWS-MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392 (548)
Q Consensus 337 -----------------------~~~~~~~v~~l~~s-pdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~ 392 (548)
..+|...+.++.|+ ||++.|++++.|+.+++||+..++....+..|...+..+.+.
T Consensus 227 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 227 QTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ----CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred ccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 13466788899987 799999999999999999999988877777777777766665
Q ss_pred cCCC-------------CCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeee
Q 008939 393 SYWS-------------QPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCP 459 (548)
Q Consensus 393 p~~~-------------~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 459 (548)
|... .|..++ .++++++.|+.|+|||+.+++++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~sgs~Dg~V~lwd~~~~~~~~--------------------------- 353 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMD------YFATAHSQHGLIQLINTYEKDSNS--------------------------- 353 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTT------EEEEEETTTTEEEEEETTCTTCCE---------------------------
T ss_pred cccccccccCcceeEEEccCCCC------EEEEEECCCCEEEEEECCCCcEEE---------------------------
Confidence 5200 011133 577888889999999988776443
Q ss_pred ecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 460 VGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 460 ~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
.+..|..+|++|+|+||+ |++++.|| +.+|.+.
T Consensus 354 --------------------~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 354 --------------------IPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp --------------------EEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred --------------------EecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 233578899999999985 88887666 5555543
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=8.5e-27 Score=239.86 Aligned_cols=273 Identities=9% Similarity=0.062 Sum_probs=211.7
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+.+++|+|++. ++++++.|+.|++||+.+... ... .+...+..|.+.|.+++|++
T Consensus 122 ~~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~-~~~--------------------~~~~~~~~~~~~v~~~~~~~ 179 (433)
T 3bws_A 122 GFQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQT-VRL--------------------SPPEKYKKKLGFVETISIPE 179 (433)
T ss_dssp SSCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCE-EEE--------------------CCCHHHHTTCCEEEEEEEGG
T ss_pred CCCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeE-eee--------------------cCcccccccCCceeEEEEcC
Confidence 34567999999555 888888899999999886221 100 00113345778999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEE-EEeCCCeEEEEECCCceeEEeccCCCCCeEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL-TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 388 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~-sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~ 388 (548)
+++++++++.|+.|++||+++++.+..+..|...+.+++|+|++++++ +++.|+.|++||+++++.+..+..+ ..+.+
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~ 258 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRG 258 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceE
Confidence 999999999999999999999999988888999999999999999885 4557999999999999998888754 45999
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEe--------CCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeee
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVG--------QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 460 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~--------~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 460 (548)
++|+| +| .+|++++ .|+.|++||+++++.+..+........+++++++. ..+..
T Consensus 259 ~~~~~-------~g------~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~-----~l~~~ 320 (433)
T 3bws_A 259 LLLSK-------DG------KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTEN-----KIYVS 320 (433)
T ss_dssp EEECT-------TS------SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTT-----EEEEE
T ss_pred EEEcC-------CC------CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCC-----EEEEE
Confidence 99999 88 5777777 58899999999998887775544555667766652 23355
Q ss_pred cccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEEC---------------CCeEEEEeCCCCCccc-cCC
Q 008939 461 GTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCR---------------EGHIKIWMRPGVAESQ-SSS 522 (548)
Q Consensus 461 g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~---------------Dg~I~iW~~~~~~~~~-~~~ 522 (548)
+..+..+.+||+...+.+..+. +...+.+++|+|++ |++++. ||.|++||+.+.+... ...
T Consensus 321 ~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 321 DMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp ETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred ecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC
Confidence 5678889999999888777765 67889999999984 777665 5799999998765322 222
Q ss_pred CCcE--EEecCCCCceEeeec-ccc
Q 008939 523 SETV--LSTSSKDKPLLSSKV-VTS 544 (548)
Q Consensus 523 ~~~v--~~~s~d~~~l~s~~~-~g~ 544 (548)
...+ ++++||+++|+++.. .+.
T Consensus 400 ~~~~~~~~~s~dg~~l~~~~~~d~~ 424 (433)
T 3bws_A 400 GNQPTGLDVSPDNRYLVISDFLDHQ 424 (433)
T ss_dssp SSSEEEEEECTTSCEEEEEETTTTE
T ss_pred CCCCceEEEcCCCCEEEEEECCCCe
Confidence 3333 388999999988764 443
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=5.2e-26 Score=230.68 Aligned_cols=267 Identities=16% Similarity=0.158 Sum_probs=210.9
Q ss_pred ceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 008939 189 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDS 268 (548)
Q Consensus 189 ~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 268 (548)
.++++++.++.|++||+.+. ++..... +...+.+++|+|++..++++++.|+.|++||+.+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~------~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~----- 64 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN------KVTATIP-------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN----- 64 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT------EEEEEEE-------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-----
T ss_pred EEEEEcCCCCEEEEEECCCC------eEEEEee-------cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC-----
Confidence 46788889999999998762 2222222 34458999999999845577889999999999752
Q ss_pred CcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCeEEEeeeecCCceEEE
Q 008939 269 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSKEQLICGGKSYYGALLCC 347 (548)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 347 (548)
+.+..+..+ ..+.+++|+|++++|++++ .|+.|++||+.+++.+..+..+ ..+.++
T Consensus 65 ---------------------~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~ 121 (391)
T 1l0q_A 65 ---------------------NVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGL 121 (391)
T ss_dssp ---------------------EEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEE
T ss_pred ---------------------eEEEEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceE
Confidence 223344444 4899999999999886555 6799999999999988877754 568999
Q ss_pred EEccCCCEE-EEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 348 AWSMDGKYI-LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 348 ~~spdg~~l-~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+|+|++++| ++++.|+.|++||+++++.+..+..| ..+..++|+| +|. .++++++.|+.|++||++
T Consensus 122 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~-------dg~-----~l~~~~~~~~~v~~~d~~ 188 (391)
T 1l0q_A 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTP-------DGT-----KVYVANFDSMSISVIDTV 188 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECT-------TSS-----EEEEEETTTTEEEEEETT
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECC-------CCC-----EEEEEeCCCCEEEEEECC
Confidence 999999977 68888999999999999998888755 5579999999 882 344788889999999999
Q ss_pred CCeEEeeeecCCCCCCceecCCCCccccCCeeeecc---cCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--E-EE
Q 008939 427 MDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT---LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--V-LT 500 (548)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~---~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l-~t 500 (548)
+++++..+........+.+++++ ..+..+. .+..+.+||+...+++..+..|.. +.+++|+|++ | ++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~g------~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s 261 (391)
T 1l0q_A 189 TNSVIDTVKVEAAPSGIAVNPEG------TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVA 261 (391)
T ss_dssp TTEEEEEEECSSEEEEEEECTTS------SEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEE
T ss_pred CCeEEEEEecCCCccceEECCCC------CEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEE
Confidence 99998888765556667777765 3333333 577899999999888888887754 7899999974 5 67
Q ss_pred EECCCeEEEEeCCCCC
Q 008939 501 VCREGHIKIWMRPGVA 516 (548)
Q Consensus 501 ~s~Dg~I~iW~~~~~~ 516 (548)
++.|+.|++||+...+
T Consensus 262 ~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 262 LSFXNTVSVIDTATNT 277 (391)
T ss_dssp ETTTTEEEEEETTTTE
T ss_pred cCCCCEEEEEECCCCc
Confidence 7899999999998765
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.8e-25 Score=216.06 Aligned_cols=177 Identities=11% Similarity=0.069 Sum_probs=136.4
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec---CCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP---GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p---~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
.|+.|++|++... ++.+.... .|...++.++|+| +++ +|++++.|++|+|||+.++
T Consensus 155 ~d~~V~~~~~s~d----G~~~~s~~-------~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TG--------- 213 (356)
T 2w18_A 155 SDQQVEVMTFAED----GGGKENQF-------LMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTG--------- 213 (356)
T ss_dssp TTCEEEEEEECTT----SCEEEEEE-------ECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTC---------
T ss_pred CCCcEEEEEECCC----Cceeeeec-------cCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCC---------
Confidence 4888888888541 22222111 3788899999999 566 9999999999999999872
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecC---CCeEEEEECCCCCEE------------EEEECCCeEEEEeCCCCeEEEee
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQ---GSINSIAFSTDGTYL------------ATVGRDGYLRVFDYSKEQLICGG 337 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l------------~s~~~dg~v~vwd~~~~~~~~~~ 337 (548)
+.++.+..|. ..+.+++|+|+|+++ ++|+.|++|++||..+++.+..+
T Consensus 214 -----------------k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~ 276 (356)
T 2w18_A 214 -----------------QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVM 276 (356)
T ss_dssp -----------------CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEE
T ss_pred -----------------cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEE
Confidence 3455555432 467788999999876 56788999999999999987655
Q ss_pred -----eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeE-EEEEecCCCCCCCCCCccceeEEE
Q 008939 338 -----KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS-GVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 338 -----~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
.+|...+.+..++ +.++++++.|++|+|||+.+++++.++.+|...+. .++|+| || .+|
T Consensus 277 ~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP-------DG------~~L 341 (356)
T 2w18_A 277 LYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG-------TD------SHL 341 (356)
T ss_dssp EECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS-------SS------SEE
T ss_pred EeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC-------CC------CEE
Confidence 3565555554444 78999999999999999999999999999987655 689999 99 799
Q ss_pred EEEeCCCeEEEEEC
Q 008939 412 GSVGQDTRLLLWDL 425 (548)
Q Consensus 412 ~s~~~Dg~i~lwd~ 425 (548)
++|+.|++|+|||+
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999996
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=1.1e-23 Score=222.54 Aligned_cols=316 Identities=13% Similarity=0.082 Sum_probs=233.7
Q ss_pred EeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe--eecccccc
Q 008939 137 NFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL--RQQLQDVG 213 (548)
Q Consensus 137 ~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl--~~~~~~~~ 213 (548)
.|+|++.+++++..+ .|.+||..+++ .+..+.... .+.+++|+|+ +++|++++.++.|.+||+ .+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~--~~~~i~~g~-~~~~v~~spd---g~~l~v~~~d~~V~v~D~~~~t------ 211 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKK--IVKVIDTGY-AVHISRMSAS---GRYLLVIGRDARIDMIDLWAKE------ 211 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCC--EEEEEECST-TEEEEEECTT---SCEEEEEETTSEEEEEETTSSS------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCce--EEEEEecCc-ccceEEECCC---CCEEEEECCCCeEEEEECcCCC------
Confidence 488999888888777 99999999854 777777443 3899999999 889999999999999999 43
Q ss_pred cceeeeeeeccCCcccCcceEEEEEec----CCCcEEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 214 KKLVGAHHYNKDGSVNNSRCTSVTWVP----GGDGAFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~v~~l~~~p----~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
.++..... +...+..++|+| +++ +|++++ .++.|.+||..+.
T Consensus 212 ~~~~~~i~-------~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~------------------------- 258 (543)
T 1nir_A 212 PTKVAEIK-------IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETL------------------------- 258 (543)
T ss_dssp CEEEEEEE-------CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTC-------------------------
T ss_pred CcEEEEEe-------cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEecccc-------------------------
Confidence 12222222 345679999999 999 677766 5899999998752
Q ss_pred CCCeeEeee----------c-CCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCeEEE--eeeecCCceEEEEEccCCC
Q 008939 289 SNPIARWHI----------C-QGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQLIC--GGKSYYGALLCCAWSMDGK 354 (548)
Q Consensus 289 ~~~~~~~~~----------h-~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~~~~~--~~~~~~~~v~~l~~spdg~ 354 (548)
+++..+.. | ...+.++.++|++. ++++...++.|.+||+.+.+.+. .+ .+...+..++|+|+|+
T Consensus 259 -~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~ 336 (543)
T 1nir_A 259 -EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHR 336 (543)
T ss_dssp -CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSC
T ss_pred -ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCC
Confidence 12222221 2 23788999999765 45666788999999998765433 33 3566788999999999
Q ss_pred EEEEEe-CCCeEEEEECCCceeEEeccC----CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEECCC-
Q 008939 355 YILTGG-EDDLVQVWSMEDRKVVAWGEG----HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDLEM- 427 (548)
Q Consensus 355 ~l~sgs-~dg~I~vwd~~~~~~~~~~~~----h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~~- 427 (548)
+|++++ .++.|.+||+++++++..+.. |......+ ++| ++. ..++++. .|++|.+||+.+
T Consensus 337 ~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p-------~~g-----~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 337 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP-------KYG-----PVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET-------TTE-----EEEEEEBSSSSEEEEEECCTT
T ss_pred EEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC-------CCc-----cEEEeccCCCceEEEEEeCCC
Confidence 876654 589999999999998887763 65544443 467 631 5677775 589999999998
Q ss_pred ------CeEEeeeecCC-CCCCceecCCCCccccCCeeeecc-------cCCCCceeecCCCCce-EEe--------ecC
Q 008939 428 ------DEIVVPLRRGP-LGGSPTFSTGSQSAHWDNVCPVGT-------LQPAPSMRDVPKLSPL-VAH--------RVH 484 (548)
Q Consensus 428 ------~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~g~-------~~~~~~~~d~~~~~~~-~~~--------~~h 484 (548)
.++++.+..+. ....+.+++++. .+.+.. .+..+.+||+.+.+.. ..+ ..|
T Consensus 404 ~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~------~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~ 477 (543)
T 1nir_A 404 NHPQYAWKKVAELQGQGGGSLFIKTHPKSS------HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG 477 (543)
T ss_dssp TCTTTBTSEEEEEECSCSCCCCEECCTTCC------EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred CCchhcCeEEEEEEcCCCCceEEEcCCCCC------cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC
Confidence 88999998653 346677888873 222222 2568899999988876 443 356
Q ss_pred CCCeeEEEEeCCe--EEEE-----ECCCeEEEEeCCCCCcc
Q 008939 485 TEPLSGLIFTQES--VLTV-----CREGHIKIWMRPGVAES 518 (548)
Q Consensus 485 ~~~V~~l~fspd~--l~t~-----s~Dg~I~iW~~~~~~~~ 518 (548)
...+..++|+|++ |+.+ +.|+.|.|||..+.++.
T Consensus 478 ~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 478 AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 7889999999985 4433 24899999999887643
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.1e-23 Score=215.67 Aligned_cols=297 Identities=13% Similarity=0.100 Sum_probs=212.7
Q ss_pred CCceeEEeCCCCCEEE-Eec-----CC----eEEEEEc--cCCCCCCe--EEEecCCCCceEEEecCC--------C---
Q 008939 131 TSMTNTNFDGKGTYII-FNV-----GD----AIFISDL--NSQDKDPI--KSIHFSNSNPVCHAFDQD--------A--- 185 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~-~~~-----~d----~v~vwd~--~~~~~~~i--~~~~~~~~~~~~~~~~p~--------~--- 185 (548)
..+....|.+.|..++ +++ +. .++|||+ .+++ .+ ..+..+...+..+++.+. +
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGT--VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTC--EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCC--EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 4556677877776444 432 22 7999999 7754 55 345556666766666641 0
Q ss_pred CCCceEEEEEcC------CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC---cEE
Q 008939 186 KDGHDLLIGLNS------GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG---NLY 256 (548)
Q Consensus 186 ~~~~~l~~g~~d------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg---~v~ 256 (548)
..+..++.++.+ +.|++||++.. ...... .|...+.+++|+|+++ .|++++.|+ .|+
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~------~~~~l~-------~~~~~v~~~~~Spdg~-~la~~s~~~~~~~i~ 206 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGY------NQFVVH-------RSPQPLMSPAWSPDGS-KLAYVTFESGRSALV 206 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSC------SCEEEE-------EESSCEEEEEECTTSS-EEEEEECTTSSCEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCC------CCEEEe-------CCCCcceeeEEcCCCC-EEEEEEecCCCcEEE
Confidence 013456666554 78999998641 111111 2678899999999999 888888775 999
Q ss_pred EEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEE-EEECCCe--EEEEeCCCCeE
Q 008939 257 VYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLA-TVGRDGY--LRVFDYSKEQL 333 (548)
Q Consensus 257 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~-s~~~dg~--v~vwd~~~~~~ 333 (548)
+||+.+. ....+..|.+.+.+++|+|||++|+ +++.|+. |++||+.+++.
T Consensus 207 ~~d~~tg---------------------------~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~ 259 (415)
T 2hqs_A 207 IQTLANG---------------------------AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI 259 (415)
T ss_dssp EEETTTC---------------------------CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred EEECCCC---------------------------cEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE
Confidence 9999862 1233455667899999999999888 5555554 99999998876
Q ss_pred EEeeeecCCceEEEEEccCCCEEEEEeCC-C--eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 334 ICGGKSYYGALLCCAWSMDGKYILTGGED-D--LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 334 ~~~~~~~~~~v~~l~~spdg~~l~sgs~d-g--~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
..+..|...+.+++|+|||++|++++.+ + .|.+||+.+++. ..+..|...+..++|+| || .+
T Consensus 260 -~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp-------dG------~~ 324 (415)
T 2hqs_A 260 -RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSS-------DG------KF 324 (415)
T ss_dssp -EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECT-------TS------SE
T ss_pred -EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECC-------CC------CE
Confidence 4566788889999999999999888764 4 688889988764 34556778899999999 99 67
Q ss_pred EEEEeCC---CeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC
Q 008939 411 FGSVGQD---TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP 487 (548)
Q Consensus 411 l~s~~~D---g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~ 487 (548)
|+.++.+ ..|.+||+.++++.. + ..|. .
T Consensus 325 l~~~~~~~g~~~i~~~d~~~~~~~~-l-----------------------------------------------~~~~-~ 355 (415)
T 2hqs_A 325 MVMVSSNGGQQHIAKQDLATGGVQV-L-----------------------------------------------SSTF-L 355 (415)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEE-C-----------------------------------------------CCSS-S
T ss_pred EEEEECcCCceEEEEEECCCCCEEE-e-----------------------------------------------cCCC-C
Confidence 7777654 589999999876532 1 1232 6
Q ss_pred eeEEEEeCCe--EEEEECCC---eEEEEeCCCCCccc-cCCCCcEE--EecCCCC
Q 008939 488 LSGLIFTQES--VLTVCREG---HIKIWMRPGVAESQ-SSSSETVL--STSSKDK 534 (548)
Q Consensus 488 V~~l~fspd~--l~t~s~Dg---~I~iW~~~~~~~~~-~~~~~~v~--~~s~d~~ 534 (548)
+.+++|+||+ |++++.|+ .|++||+.++.... ..+...+. +++|...
T Consensus 356 ~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 356 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence 8899999984 77887776 89999998766433 35556665 7777643
No 129
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=1.2e-22 Score=231.86 Aligned_cols=357 Identities=13% Similarity=0.076 Sum_probs=253.7
Q ss_pred CCCCCCceeEEeCCCCCEEEEecC------C-eEEEEEccCCCCCCeEEEecCCCCc-------eEEEecCCCCCCceEE
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVG------D-AIFISDLNSQDKDPIKSIHFSNSNP-------VCHAFDQDAKDGHDLL 192 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~------d-~v~vwd~~~~~~~~i~~~~~~~~~~-------~~~~~~p~~~~~~~l~ 192 (548)
..|...+..++|+|||++|++.+. + .|++||+.++ .+..+..+...+ ..++|+|+ +..++
T Consensus 49 t~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g---~~~~lt~~~~~~~~~~~~~~~~~~SpD---g~ll~ 122 (1045)
T 1k32_A 49 VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG---EIKRITYFSGKSTGRRMFTDVAGFDPD---GNLII 122 (1045)
T ss_dssp ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT---EEEECCCCCEEEETTEECSEEEEECTT---CCEEE
T ss_pred eeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCC---CeEEcccCCCcccccccccccccCCCC---CEEEE
Confidence 357888999999999999998642 2 8999999864 356677777666 89999999 66666
Q ss_pred EEEcC------CcEEEEEeeecccccc-cceeeeeee------------------------------cc------CCccc
Q 008939 193 IGLNS------GDVYSVSLRQQLQDVG-KKLVGAHHY------------------------------NK------DGSVN 229 (548)
Q Consensus 193 ~g~~d------g~I~iwdl~~~~~~~~-~~~~~~~~~------------------------------~~------~~~~~ 229 (548)
++..+ ..|++|++........ ........+ .. ....|
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~ 202 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM 202 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence 66644 3588888754211100 000000000 00 00236
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+.++.|+++ . +++++..|+.+.||+++..+.. ...+..| ..+..++|+|
T Consensus 203 ~~~v~~~~~s~d-~-l~~~~~~dg~~~l~~~~~~g~~-------------------------~~~l~~~-~~~~~~~~Sp 254 (1045)
T 1k32_A 203 STHVSSPVIVGH-R-IYFITDIDGFGQIYSTDLDGKD-------------------------LRKHTSF-TDYYPRHLNT 254 (1045)
T ss_dssp SSCCEEEEEETT-E-EEEEECTTSSCEEEEEETTSCS-------------------------CEECCCC-CSSCEEEEEE
T ss_pred CCcccceEEeCC-E-EEEEEeccCceEEEEEeCCCCc-------------------------ceEecCC-CCcceeeEcC
Confidence 778899999988 4 7888888999999987653221 1122222 2456779999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeee-----------cCCceEEEEEc-cCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKS-----------YYGALLCCAWS-MDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~-----------~~~~v~~l~~s-pdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
||++|+++ .++.|.+||+...++. .+.. |...+.+++|+ |||++|++++ ++.|.+|++..++...
T Consensus 255 DG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~ 331 (1045)
T 1k32_A 255 DGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK 331 (1045)
T ss_dssp SSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE
T ss_pred CCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE
Confidence 99999887 4899999999554443 4443 33468999999 9999999887 7899999998876554
Q ss_pred eccCCCC-CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE-EEECCCCeEEeeeecCCCCCCceecCCCCccccC
Q 008939 378 WGEGHNS-WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL-LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWD 455 (548)
Q Consensus 378 ~~~~h~~-~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~-lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 455 (548)
+..|.. .+..++|+ || ..|+.++.+..|. +||+..++.............+.+++++
T Consensus 332 -~~~~~~~~~~~~~~s--------dg------~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG------ 390 (1045)
T 1k32_A 332 -VPEPLRIRYVRRGGD--------TK------VAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG------ 390 (1045)
T ss_dssp -CSCCSCEEEEEECSS--------SE------EEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTS------
T ss_pred -ccCCCcceEEeeeEc--------CC------CeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCC------
Confidence 566777 78888885 55 6788888888999 9999887765433222345567788886
Q ss_pred CeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCC----------eEEEEeCCCCCcc-ccCC
Q 008939 456 NVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREG----------HIKIWMRPGVAES-QSSS 522 (548)
Q Consensus 456 ~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg----------~I~iW~~~~~~~~-~~~~ 522 (548)
..+..+..+..+++||+.+.+......+|...+..++|+||+ |++++.++ .|++||+.++... ...+
T Consensus 391 ~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~ 470 (1045)
T 1k32_A 391 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE 470 (1045)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS
T ss_pred CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCC
Confidence 344455566788999999888887777899999999999984 77776654 9999999876533 2234
Q ss_pred CCcEE--EecCCCCceEeeec
Q 008939 523 SETVL--STSSKDKPLLSSKV 541 (548)
Q Consensus 523 ~~~v~--~~s~d~~~l~s~~~ 541 (548)
...+. +|+|||++|+.+..
T Consensus 471 ~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 471 NSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp SSBEEEEEECTTSCEEEEEES
T ss_pred CcccCCceEcCCCCEEEEEec
Confidence 44443 79999999887764
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=2e-22 Score=221.98 Aligned_cols=316 Identities=14% Similarity=0.144 Sum_probs=219.4
Q ss_pred cCCCCceEEEecCCCCCCceEEEEEc-CC-----cEEEEEeeecccccccceeeeeeecc-------CCc--------cc
Q 008939 171 FSNSNPVCHAFDQDAKDGHDLLIGLN-SG-----DVYSVSLRQQLQDVGKKLVGAHHYNK-------DGS--------VN 229 (548)
Q Consensus 171 ~~~~~~~~~~~~p~~~~~~~l~~g~~-dg-----~I~iwdl~~~~~~~~~~~~~~~~~~~-------~~~--------~~ 229 (548)
+....+.+++|+|+ |.+|++++. ++ .|++||+.+.. ...+.......+ +.. ..
T Consensus 34 ~~~~~~~~~~~Spd---G~~la~~~~~d~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 34 LSGPTLMKPKVAPD---GSRVTFLRGKDSDRNQLDLWSYDIGSGQ---TRLLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp TTCCCCEEEEECTT---SSEEEEEECCSSCTTEEEEEEEETTTCC---EEEEECGGGTC--------------------C
T ss_pred cCCCCCCCceEecC---CCEEEEEeccCCCCcccEEEEEECCCCc---eeEccchhhcccccccccchhhhhhhhhhhcc
Confidence 34667899999999 888999998 88 89999987621 011110000000 000 00
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+.+++|+||++ .|++++. +.|++||+...... .+..+..|...+.+++|+|
T Consensus 108 ~~~v~~~~~SpDg~-~l~~~~~-~~i~~~d~~~~~~~------------------------~~~~l~~~~~~~~~~~~SP 161 (741)
T 2ecf_A 108 MTGIVDYQWSPDAQ-RLLFPLG-GELYLYDLKQEGKA------------------------AVRQLTHGEGFATDAKLSP 161 (741)
T ss_dssp CEESCCCEECTTSS-EEEEEET-TEEEEEESSSCSTT------------------------SCCBCCCSSSCEEEEEECT
T ss_pred ccCcceeEECCCCC-EEEEEeC-CcEEEEECCCCCcc------------------------eEEEcccCCcccccccCCC
Confidence 03488999999999 7777776 99999999863100 1112233447799999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCc----------------eEEEEEccCCCEEEEEeCCC----------
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA----------------LLCCAWSMDGKYILTGGEDD---------- 363 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~----------------v~~l~~spdg~~l~sgs~dg---------- 363 (548)
||++|++++ ++.|++||+.+++.......+... +..++|+|||++|++++.|+
T Consensus 162 DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~ 240 (741)
T 2ecf_A 162 KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYE 240 (741)
T ss_dssp TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCC
Confidence 999999987 569999999988776544433332 47899999999999987765
Q ss_pred -----------------------eEEEEECCC-ceeEEecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-
Q 008939 364 -----------------------LVQVWSMED-RKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ- 416 (548)
Q Consensus 364 -----------------------~I~vwd~~~-~~~~~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~- 416 (548)
.|.+||+.+ ++...... .|...+..++| | || .+|+..+.
T Consensus 241 ~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-------Dg------~~l~~~~~~ 306 (741)
T 2ecf_A 241 VYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R-------DP------QHLSFQRQS 306 (741)
T ss_dssp ECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E-------ET------TEEEEEEEE
T ss_pred CCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-C-------CC------CEEEEEEec
Confidence 889999998 77655443 47889999999 9 99 56665543
Q ss_pred ----CCeEEEEECCCCeEEeeeecCC-----CCCCceecCCCCccccCCeeeecccCCCCceeecC-CCCceEEeecCCC
Q 008939 417 ----DTRLLLWDLEMDEIVVPLRRGP-----LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVP-KLSPLVAHRVHTE 486 (548)
Q Consensus 417 ----Dg~i~lwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~-~~~~~~~~~~h~~ 486 (548)
+..|++||+.++++...+.... ....+.|++++. .+..+..++...+|.+. ... ...+..|..
T Consensus 307 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~------~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~ 379 (741)
T 2ecf_A 307 RDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS------ILWSSERTGFQHLYRIDSKGK-AAALTHGNW 379 (741)
T ss_dssp TTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC------EEEEECTTSSCEEEEECSSSC-EEESCCSSS
T ss_pred ccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe------EEEEecCCCccEEEEEcCCCC-eeeeeecce
Confidence 6789999999998877665432 335788888873 33445556667777665 334 777778888
Q ss_pred CeeEE-EEeCCe--E-EEEECCC--eEEEEeCCC--CCccccCCCCcE--EEecCCCCceEeee
Q 008939 487 PLSGL-IFTQES--V-LTVCREG--HIKIWMRPG--VAESQSSSSETV--LSTSSKDKPLLSSK 540 (548)
Q Consensus 487 ~V~~l-~fspd~--l-~t~s~Dg--~I~iW~~~~--~~~~~~~~~~~v--~~~s~d~~~l~s~~ 540 (548)
.|..+ .|+|++ | ++++.|+ .++||++.. ...........+ .++|||+++|+...
T Consensus 380 ~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~ 443 (741)
T 2ecf_A 380 SVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSW 443 (741)
T ss_dssp CEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEE
T ss_pred EEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEe
Confidence 89887 599984 5 4556666 899999753 222223323333 38999999987663
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=1.7e-22 Score=206.67 Aligned_cols=243 Identities=13% Similarity=0.037 Sum_probs=181.3
Q ss_pred cccCCCCCCceeEEeCC--------------CCCEEEEecC-------CeEEEEEccCCCCCCeEEEecCCCCceEEEec
Q 008939 124 LGASSSSTSMTNTNFDG--------------KGTYIIFNVG-------DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFD 182 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~--------------~g~~l~~~~~-------d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~ 182 (548)
..+.+|...+..+++.+ .+..+++.+. ..|++||++. ..+..+..+...+.+++|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g---~~~~~l~~~~~~v~~~~~S 187 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG---YNQFVVHRSPQPLMSPAWS 187 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS---CSCEEEEEESSCEEEEEEC
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC---CCCEEEeCCCCcceeeEEc
Confidence 33455666666555553 2556655443 4899999974 2456676688899999999
Q ss_pred CCCCCCceEEEEEcCC---cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEE-EEeCCCc--EE
Q 008939 183 QDAKDGHDLLIGLNSG---DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV-VGHADGN--LY 256 (548)
Q Consensus 183 p~~~~~~~l~~g~~dg---~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~-s~~~dg~--v~ 256 (548)
|+ +..|++++.++ .|++||+++. +. .... .+...+.+++|+|+++ .|+ +++.|+. |+
T Consensus 188 pd---g~~la~~s~~~~~~~i~~~d~~tg-----~~-~~l~-------~~~~~~~~~~~spdg~-~la~~~~~~g~~~i~ 250 (415)
T 2hqs_A 188 PD---GSKLAYVTFESGRSALVIQTLANG-----AV-RQVA-------SFPRHNGAPAFSPDGS-KLAFALSKTGSLNLY 250 (415)
T ss_dssp TT---SSEEEEEECTTSSCEEEEEETTTC-----CE-EEEE-------CCSSCEEEEEECTTSS-EEEEEECTTSSCEEE
T ss_pred CC---CCEEEEEEecCCCcEEEEEECCCC-----cE-EEee-------cCCCcccCEEEcCCCC-EEEEEEecCCCceEE
Confidence 99 88899999885 8999999762 21 1111 1567899999999999 555 7776665 99
Q ss_pred EEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC-CC--eEEEEeCCCCeE
Q 008939 257 VYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR-DG--YLRVFDYSKEQL 333 (548)
Q Consensus 257 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-dg--~v~vwd~~~~~~ 333 (548)
+||+.+. ....+..|...+.+++|+|||++|++++. ++ .|.+||+.+++.
T Consensus 251 ~~d~~~~---------------------------~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~ 303 (415)
T 2hqs_A 251 VMDLASG---------------------------QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP 303 (415)
T ss_dssp EEETTTC---------------------------CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred EEECCCC---------------------------CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence 9998752 12344456678999999999999998886 44 688889988764
Q ss_pred EEeeeecCCceEEEEEccCCCEEEEEeCC---CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 334 ICGGKSYYGALLCCAWSMDGKYILTGGED---DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 334 ~~~~~~~~~~v~~l~~spdg~~l~sgs~d---g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
. .+..+...+.+++|+|||++|++++.+ ..|.+||+++++.. .+..|. .+.+++|+| || .+
T Consensus 304 ~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-------dg------~~ 367 (415)
T 2hqs_A 304 Q-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-------NG------TM 367 (415)
T ss_dssp E-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-------TS------SE
T ss_pred E-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-------CC------CE
Confidence 3 344566789999999999999988764 58999999988774 455554 899999999 99 67
Q ss_pred EEEEeCCC---eEEEEECCCCe
Q 008939 411 FGSVGQDT---RLLLWDLEMDE 429 (548)
Q Consensus 411 l~s~~~Dg---~i~lwd~~~~~ 429 (548)
|++++.|+ .|.+||+..+.
T Consensus 368 l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 368 VIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEEEETTEEEEEEEETTSCC
T ss_pred EEEEEcCCCccEEEEEECCCCc
Confidence 88887776 79999987443
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=4.6e-22 Score=210.08 Aligned_cols=300 Identities=11% Similarity=0.037 Sum_probs=220.7
Q ss_pred EEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEE
Q 008939 178 CHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYV 257 (548)
Q Consensus 178 ~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~v 257 (548)
+.+|+|+ +..++++..++.|.+||..+ .++..... ....+..++|+|+++ +|++++.|+.|++
T Consensus 142 ~~~~~p~---~~~~vs~~~d~~V~v~D~~t------~~~~~~i~-------~g~~~~~v~~spdg~-~l~v~~~d~~V~v 204 (543)
T 1nir_A 142 LNDLDLP---NLFSVTLRDAGQIALVDGDS------KKIVKVID-------TGYAVHISRMSASGR-YLLVIGRDARIDM 204 (543)
T ss_dssp CSCCCGG---GEEEEEEGGGTEEEEEETTT------CCEEEEEE-------CSTTEEEEEECTTSC-EEEEEETTSEEEE
T ss_pred ccccCCC---CEEEEEEcCCCeEEEEECCC------ceEEEEEe-------cCcccceEEECCCCC-EEEEECCCCeEEE
Confidence 3357776 77888889999999999876 22222222 112388999999999 8999999999999
Q ss_pred EEc--CCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC----CCCEEEEEE-CCCeEEEEeCCC
Q 008939 258 YEK--SKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST----DGTYLATVG-RDGYLRVFDYSK 330 (548)
Q Consensus 258 wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp----~g~~l~s~~-~dg~v~vwd~~~ 330 (548)
||+ .+ ...+..+. +...+..++|+| ||++|++++ .++.|.+||..+
T Consensus 205 ~D~~~~t--------------------------~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t 257 (543)
T 1nir_A 205 IDLWAKE--------------------------PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 257 (543)
T ss_dssp EETTSSS--------------------------CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred EECcCCC--------------------------CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence 999 43 11233333 235678999999 999999887 489999999999
Q ss_pred CeEEEeeee----------c-CCceEEEEEccCCCE-EEEEeCCCeEEEEECCCceeEE--eccCCCCCeEEEEEecCCC
Q 008939 331 EQLICGGKS----------Y-YGALLCCAWSMDGKY-ILTGGEDDLVQVWSMEDRKVVA--WGEGHNSWVSGVAFDSYWS 396 (548)
Q Consensus 331 ~~~~~~~~~----------~-~~~v~~l~~spdg~~-l~sgs~dg~I~vwd~~~~~~~~--~~~~h~~~V~~v~~~p~~~ 396 (548)
++++..+.. | ...+..+.++|++.. +++...++.|.+||+.+.+.+. .+. +...+..+.|+|
T Consensus 258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~sp--- 333 (543)
T 1nir_A 258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDS--- 333 (543)
T ss_dssp CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECT---
T ss_pred cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECC---
Confidence 998887754 2 237889999998764 5667778999999998865433 443 677888999999
Q ss_pred CCCCCCCccceeEEE-EEEeCCCeEEEEECCCCeEEeeeecC---CCCCCcee-cCCCCccccCCeeeecc-cCCCCcee
Q 008939 397 QPNSDGTAETVMYRF-GSVGQDTRLLLWDLEMDEIVVPLRRG---PLGGSPTF-STGSQSAHWDNVCPVGT-LQPAPSMR 470 (548)
Q Consensus 397 ~~~~dg~~~~~~~~l-~s~~~Dg~i~lwd~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~d~~~~~g~-~~~~~~~~ 470 (548)
|| ++| +++..++.|.+||+.+++++..+... ++.....+ .+++ ...+.++. .+..+.+|
T Consensus 334 ----dg------~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~-----g~~~~s~~~~d~~V~v~ 398 (543)
T 1nir_A 334 ----SH------RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY-----GPVWSTSHLGDGSISLI 398 (543)
T ss_dssp ----TS------CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTT-----EEEEEEEBSSSSEEEEE
T ss_pred ----CC------CEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCC-----ccEEEeccCCCceEEEE
Confidence 98 444 55556899999999999998887742 22222222 2331 11223443 35788999
Q ss_pred ecCC-------CCceEEeecCCCCeeEEEEeCCe--EEEEE-------CCCeEEEEeCCCCCcc-c----------cCCC
Q 008939 471 DVPK-------LSPLVAHRVHTEPLSGLIFTQES--VLTVC-------REGHIKIWMRPGVAES-Q----------SSSS 523 (548)
Q Consensus 471 d~~~-------~~~~~~~~~h~~~V~~l~fspd~--l~t~s-------~Dg~I~iW~~~~~~~~-~----------~~~~ 523 (548)
|+.. ++.+..+.+|...+..|+|+|++ |++++ .+++|++||+.+.+.. . ..+.
T Consensus 399 d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~ 478 (543)
T 1nir_A 399 GTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA 478 (543)
T ss_dssp ECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred EeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC
Confidence 9987 89999999999999999999985 77766 2789999999876643 1 1223
Q ss_pred CcEE--EecCCCCceEeee
Q 008939 524 ETVL--STSSKDKPLLSSK 540 (548)
Q Consensus 524 ~~v~--~~s~d~~~l~s~~ 540 (548)
..+. .|+|||+.|..+.
T Consensus 479 ~~~~~~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 479 KRVVQPEYNKRGDEVWFSV 497 (543)
T ss_dssp CEEEEEEECSSSSEEEEEE
T ss_pred CceEeccCCCCCCEEEEEe
Confidence 3444 8999999988763
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=2e-22 Score=221.89 Aligned_cols=337 Identities=12% Similarity=0.088 Sum_probs=221.4
Q ss_pred CCCceeEEeCCCCCEEEEecC-C------eEEEEEccCCCCCCeEEEecCCC------------------------CceE
Q 008939 130 STSMTNTNFDGKGTYIIFNVG-D------AIFISDLNSQDKDPIKSIHFSNS------------------------NPVC 178 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~-d------~v~vwd~~~~~~~~i~~~~~~~~------------------------~~~~ 178 (548)
...+..++|+|||++|++.+. + .|++||+.++. ....+..+.. .+.+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ--TRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC--EEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc--eeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 456789999999999999765 3 79999999855 4444443322 3789
Q ss_pred EEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEE
Q 008939 179 HAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVY 258 (548)
Q Consensus 179 ~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vw 258 (548)
++|+|+ +.+|++++. +.|++||+...... .+.... .+...+.+++|+|+|+ .|+.++ ++.|++|
T Consensus 114 ~~~SpD---g~~l~~~~~-~~i~~~d~~~~~~~---~~~~l~-------~~~~~~~~~~~SPDG~-~la~~~-~~~i~~~ 177 (741)
T 2ecf_A 114 YQWSPD---AQRLLFPLG-GELYLYDLKQEGKA---AVRQLT-------HGEGFATDAKLSPKGG-FVSFIR-GRNLWVI 177 (741)
T ss_dssp CEECTT---SSEEEEEET-TEEEEEESSSCSTT---SCCBCC-------CSSSCEEEEEECTTSS-EEEEEE-TTEEEEE
T ss_pred eEECCC---CCEEEEEeC-CcEEEEECCCCCcc---eEEEcc-------cCCcccccccCCCCCC-EEEEEe-CCcEEEE
Confidence 999999 778888886 99999999762000 111111 2567799999999999 777776 4699999
Q ss_pred EcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC-----------------
Q 008939 259 EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG----------------- 321 (548)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg----------------- 321 (548)
|+.... ....... ... ....... ..........+..++|+|||++|++++.|+
T Consensus 178 d~~~g~-~~~~~~~-~~~-~~~~g~~-------~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~ 247 (741)
T 2ecf_A 178 DLASGR-QMQLTAD-GST-TIGNGIA-------EFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTD 247 (741)
T ss_dssp ETTTTE-EEECCCC-CCS-SEEESCC-------CHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEE
T ss_pred ecCCCC-EEEeccC-Ccc-ceecccc-------ceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCccc
Confidence 987521 1100000 000 0000000 000000012357899999999999998776
Q ss_pred ----------------eEEEEeCCC-CeEEEeee--ecCCceEEEEEccCCCEEEEEeC-----CCeEEEEECCCceeEE
Q 008939 322 ----------------YLRVFDYSK-EQLICGGK--SYYGALLCCAWSMDGKYILTGGE-----DDLVQVWSMEDRKVVA 377 (548)
Q Consensus 322 ----------------~v~vwd~~~-~~~~~~~~--~~~~~v~~l~~spdg~~l~sgs~-----dg~I~vwd~~~~~~~~ 377 (548)
.|.+||+.+ ++...... .|...+..++| |||++|++++. +..|++||+.+++...
T Consensus 248 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~ 326 (741)
T 2ecf_A 248 VIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV 326 (741)
T ss_dssp EEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE
T ss_pred ceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE
Confidence 889999988 77654432 36678999999 99999987653 5689999999998777
Q ss_pred eccCCCC----CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC-CCeEEeeeecC-CCCCCc-eecCCCC
Q 008939 378 WGEGHNS----WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE-MDEIVVPLRRG-PLGGSP-TFSTGSQ 450 (548)
Q Consensus 378 ~~~~h~~----~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~-~~~~~~~~~~~-~~~~~~-~~~~~~~ 450 (548)
.+..+.. .+..++|+| || ++++++..|+.++||.+. .+. ...+..+ ..+..+ .|++++.
T Consensus 327 ~~~~~~~~~~~~~~~~~~sp-------dg------~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~ 392 (741)
T 2ecf_A 327 LAHETSPTWVPLHNSLRFLD-------DG------SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAG 392 (741)
T ss_dssp EEEEECSSCCCCCSCCEECT-------TS------CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTT
T ss_pred EEEcCCCCcCCcCCceEECC-------CC------eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCC
Confidence 6665443 446899999 99 678888899988888765 334 4444332 222233 3677662
Q ss_pred ccccCCeeeecccCC--CCceeecCC-CCceEEeecCCCCeeEEEEeCCe--EEEE-ECC---CeEEEEeCCCC
Q 008939 451 SAHWDNVCPVGTLQP--APSMRDVPK-LSPLVAHRVHTEPLSGLIFTQES--VLTV-CRE---GHIKIWMRPGV 515 (548)
Q Consensus 451 ~~~~d~~~~~g~~~~--~~~~~d~~~-~~~~~~~~~h~~~V~~l~fspd~--l~t~-s~D---g~I~iW~~~~~ 515 (548)
..+..+..+. .+++|++.. ...+..+.. ...+..+.|+||+ |+.. +.. ..+.+|+..+.
T Consensus 393 -----~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 393 -----LAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp -----EEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred -----EEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 1222333333 677888754 444556654 6678999999984 4433 333 56888887554
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=3.3e-22 Score=228.37 Aligned_cols=358 Identities=12% Similarity=0.117 Sum_probs=242.7
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
.+|...+..+.|+++ .+++++..+ .+.||.+.... .....+..+. .+.+.+|+|+ +..|+.+ .++.|++||+
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g-~~~~~l~~~~-~~~~~~~SpD---G~~la~~-~~~~i~~~d~ 272 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG-KDLRKHTSFT-DYYPRHLNTD---GRRILFS-KGGSIYIFNP 272 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTS-CSCEECCCCC-SSCEEEEEES---SSCEEEE-ETTEEEEECT
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCC-CcceEecCCC-CcceeeEcCC---CCEEEEE-eCCEEEEecC
Confidence 578889999999988 444444444 77888766422 2444554443 5677899998 7778777 5899999998
Q ss_pred eecccccccceeeeeeec-----cCCcccCcceEEEEEe-cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 206 RQQLQDVGKKLVGAHHYN-----KDGSVNNSRCTSVTWV-PGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~l~~~-p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
.. +.+.. .... .....+...+.+++|+ |++. .|++++ ++.|++|++...
T Consensus 273 ~~------~~l~~-l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~-~la~~~-~~~i~~~~~~~~---------------- 327 (1045)
T 1k32_A 273 DT------EKIEK-IEIGDLESPEDRIISIPSKFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGT---------------- 327 (1045)
T ss_dssp TT------CCEEE-CCCCCCCBCCSEEEECGGGGEEEEEECGGG-CEEEEE-TTEEEEECTTSS----------------
T ss_pred Cc------eEeee-eccCcccccccccccccccceeeecCCCCC-EEEEEE-cCEEEEEcCCCC----------------
Confidence 32 22211 1000 0000134578999999 9998 666666 789999998642
Q ss_pred eeecCCCCCCCCeeEeeecCC-CeEEEEECCCCCEEEEEECCCeEE-EEeCCCCeEEEeeeecCCceEEEEEccCCCEEE
Q 008939 280 SVAHPRYSKSNPIARWHICQG-SINSIAFSTDGTYLATVGRDGYLR-VFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~v~-vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
....+..|.. .+..++|+ ||+.|++++.+..+. +||+.+++.... ..|...+..++|+|||++|+
T Consensus 328 -----------~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la 394 (1045)
T 1k32_A 328 -----------YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAV 394 (1045)
T ss_dssp -----------BEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEE
T ss_pred -----------ceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEE
Confidence 1122333445 78999999 999999999888898 999987765543 37778899999999999999
Q ss_pred EEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC----------eEEEEECCC
Q 008939 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT----------RLLLWDLEM 427 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg----------~i~lwd~~~ 427 (548)
+++.++.|++||+++++....+.+|...|..++|+| || ++|++++.++ .|++||+.+
T Consensus 395 ~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-------DG------~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 395 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-------NS------RFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-------TS------CEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred EECCCCeEEEEECCCCceEEeccCCCCCccceEECC-------CC------CeEEEEecCccccccCCCCCeEEEEECCC
Confidence 999999999999999988888778999999999999 99 6787777644 999999999
Q ss_pred CeEEeeeecCCCCCCceecCCCCccc---cCCeeeecc-------cCCCC--------------------------ceee
Q 008939 428 DEIVVPLRRGPLGGSPTFSTGSQSAH---WDNVCPVGT-------LQPAP--------------------------SMRD 471 (548)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~g~-------~~~~~--------------------------~~~d 471 (548)
++.............+.|++++.... .+.....+. ..... ..++
T Consensus 462 g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 541 (1045)
T 1k32_A 462 RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 541 (1045)
T ss_dssp TEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCC
T ss_pred CcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCcccccccccc
Confidence 87433222223344566777764110 000000000 00000 0122
Q ss_pred cCC-CCceEEeecCCCCeeEEEEeCCe--EEE-------------EECCCeEEEEeCCCCCccccCCCCcEEEecCCCCc
Q 008939 472 VPK-LSPLVAHRVHTEPLSGLIFTQES--VLT-------------VCREGHIKIWMRPGVAESQSSSSETVLSTSSKDKP 535 (548)
Q Consensus 472 ~~~-~~~~~~~~~h~~~V~~l~fspd~--l~t-------------~s~Dg~I~iW~~~~~~~~~~~~~~~v~~~s~d~~~ 535 (548)
+.. ...+..+..|...+..+.|+||+ +++ ...+..|.+||+.+++..........+++||||++
T Consensus 542 ~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~v~~~~~S~DG~~ 621 (1045)
T 1k32_A 542 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKT 621 (1045)
T ss_dssp CTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCE
T ss_pred ccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeecCcceEEECCCCCE
Confidence 222 12344555677889999999995 443 12356788888887765444322233489999999
Q ss_pred eEeeecc
Q 008939 536 LLSSKVV 542 (548)
Q Consensus 536 l~s~~~~ 542 (548)
|+++...
T Consensus 622 l~~~~~~ 628 (1045)
T 1k32_A 622 VMVRKDD 628 (1045)
T ss_dssp EEEEETT
T ss_pred EEEEcCC
Confidence 9988654
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=8e-21 Score=187.73 Aligned_cols=283 Identities=12% Similarity=0.102 Sum_probs=188.1
Q ss_pred EEeCCCCCEEE-EecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc-CCcEEEEEeeeccccc
Q 008939 136 TNFDGKGTYII-FNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN-SGDVYSVSLRQQLQDV 212 (548)
Q Consensus 136 ~~~~~~g~~l~-~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~-dg~I~iwdl~~~~~~~ 212 (548)
+.|.+++.+++ ++..+ .|++||+.+++ .+..+......+ +++|+|+ +..|+++.. ++.|++||+.+.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~-~~~~s~d---g~~l~~~~~~~~~i~~~d~~~~---- 72 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLE--ILNQITLGYDFV-DTAITSD---CSNVVVTSDFCQTLVQIETQLE---- 72 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCC--EEEEEECCCCEE-EEEECSS---SCEEEEEESTTCEEEEEECSSS----
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccc--eeeeEEccCCcc-eEEEcCC---CCEEEEEeCCCCeEEEEECCCC----
Confidence 34556666544 44444 99999999854 667777666666 9999999 766766666 889999998762
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC---cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG---NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
+....... .+..++.+++|+|+++ +|+++..++ .|++||+....
T Consensus 73 -~~~~~~~~------~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~------------------------- 119 (331)
T 3u4y_A 73 -PPKVVAIQ------EGQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNK------------------------- 119 (331)
T ss_dssp -SCEEEEEE------ECSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTE-------------------------
T ss_pred -ceeEEecc------cCCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCC-------------------------
Confidence 22111111 1344445599999999 677655553 89999997521
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCe-EEEEeCCCCeEEE----eeeecCCceEEEEEccCCCEEEE-EeCC
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATV-GRDGY-LRVFDYSKEQLIC----GGKSYYGALLCCAWSMDGKYILT-GGED 362 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~-v~vwd~~~~~~~~----~~~~~~~~v~~l~~spdg~~l~s-gs~d 362 (548)
.+..+.. ...+.+++|+|+|++|+++ ..++. |.+|++.....+. ...........++|+|+|++|++ +..+
T Consensus 120 -~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 197 (331)
T 3u4y_A 120 -FISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG 197 (331)
T ss_dssp -EEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT
T ss_pred -eEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC
Confidence 1222222 2456899999999866555 55578 9999997543321 11223456889999999996655 4468
Q ss_pred CeEEEEECCCcee---EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE-EEEeCCCeEEEEECCCCeEE--eeeec
Q 008939 363 DLVQVWSMEDRKV---VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF-GSVGQDTRLLLWDLEMDEIV--VPLRR 436 (548)
Q Consensus 363 g~I~vwd~~~~~~---~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l-~s~~~Dg~i~lwd~~~~~~~--~~~~~ 436 (548)
+.|++||+++++. +..+. +...+..++|+| || ++| ++...++.|.+||+.+++.. ..+..
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~sp-------dg------~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~ 263 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVG-TNNLPGTIVVSR-------DG------STVYVLTESTVDVFNFNQLSGTLSFVKSFGH 263 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECT-------TS------SEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred CeEEEEECCCCcccceeeecc-CCCCCceEEECC-------CC------CEEEEEEcCCCEEEEEECCCCceeeeccccc
Confidence 9999999999887 77776 446778999999 98 444 45556789999999998763 22221
Q ss_pred CCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EE-EEECCCeEEEEeCC
Q 008939 437 GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VL-TVCREGHIKIWMRP 513 (548)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~-t~s~Dg~I~iW~~~ 513 (548)
. +. ...........++|+||+ |+ ++..++.|++||+.
T Consensus 264 ~-----~~-----------------------------------~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 264 G-----LL-----------------------------------IDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp C-----CC-----------------------------------CCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred c-----cc-----------------------------------cCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 0 00 000011223678999984 54 55566799999998
Q ss_pred CCCc
Q 008939 514 GVAE 517 (548)
Q Consensus 514 ~~~~ 517 (548)
....
T Consensus 304 ~~~~ 307 (331)
T 3u4y_A 304 GKVV 307 (331)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 7653
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=6.2e-21 Score=189.01 Aligned_cols=273 Identities=13% Similarity=0.153 Sum_probs=180.2
Q ss_pred EEEEe-cCC-eEEEEEccC-CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC-CcEEEEEeeeccccccc-ceee
Q 008939 144 YIIFN-VGD-AIFISDLNS-QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS-GDVYSVSLRQQLQDVGK-KLVG 218 (548)
Q Consensus 144 ~l~~~-~~d-~v~vwd~~~-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d-g~I~iwdl~~~~~~~~~-~~~~ 218 (548)
+++++ ..+ .|++||++. +..+.+..+ .+...+.+++|+|+ +.+|+++..+ +.|.+|++... .++ ....
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spd---g~~l~~~~~~~~~v~~~~~~~~---~~~~~~~~ 78 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPD---KRYLYVGVRPEFRVLAYRIAPD---DGALTFAA 78 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTT---SSEEEEEETTTTEEEEEEECTT---TCCEEEEE
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCC---CCEEEEeecCCCeEEEEEecCC---CCceeecc
Confidence 34443 444 999999964 221233333 36678999999998 7788888887 89999998721 011 1111
Q ss_pred eeeeccCCcccCcceEEEEEecCCCcEEEE-EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee
Q 008939 219 AHHYNKDGSVNNSRCTSVTWVPGGDGAFVV-GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI 297 (548)
Q Consensus 219 ~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (548)
... ....+.+++|+|+++ .|++ +..++.|++||+.. +.. ...+..+..
T Consensus 79 ~~~-------~~~~~~~~~~s~dg~-~l~~~~~~~~~i~~~d~~~-~~~----------------------~~~~~~~~~ 127 (343)
T 1ri6_A 79 ESA-------LPGSLTHISTDHQGQ-FVFVGSYNAGNVSVTRLED-GLP----------------------VGVVDVVEG 127 (343)
T ss_dssp EEE-------CSSCCSEEEECTTSS-EEEEEETTTTEEEEEEEET-TEE----------------------EEEEEEECC
T ss_pred ccc-------cCCCCcEEEEcCCCC-EEEEEecCCCeEEEEECCC-Ccc----------------------ccccccccC
Confidence 111 123788999999999 5555 45588999999952 110 011122222
Q ss_pred cCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCC-CeEEE----eeee-cCCceEEEEEccCCCEEEEEe-CCCeEEEEE
Q 008939 298 CQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSK-EQLIC----GGKS-YYGALLCCAWSMDGKYILTGG-EDDLVQVWS 369 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~-~~~~~----~~~~-~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd 369 (548)
...+.+++|+|++++|++++ .++.|++||+.+ ++... .+.. ....+.+++|+|++++|++++ .++.|.+||
T Consensus 128 -~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~ 206 (343)
T 1ri6_A 128 -LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE 206 (343)
T ss_dssp -CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred -CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 24588899999999888887 899999999987 65432 2222 234788999999999776554 789999999
Q ss_pred CCC--cee--EEec---c-CC--CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC--CeEEeeeecC
Q 008939 370 MED--RKV--VAWG---E-GH--NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM--DEIVVPLRRG 437 (548)
Q Consensus 370 ~~~--~~~--~~~~---~-~h--~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~--~~~~~~~~~~ 437 (548)
++. ++. ...+ . ++ ...+..++|+| ||. +++++...|+.|.+||+.. +... .
T Consensus 207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-------dg~-----~l~v~~~~~~~i~v~d~~~~~~~~~-~---- 269 (343)
T 1ri6_A 207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-------DGR-----HLYACDRTASLITVFSVSEDGSVLS-K---- 269 (343)
T ss_dssp SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-------TSS-----EEEEEETTTTEEEEEEECTTSCCEE-E----
T ss_pred ecCCCCcEEEEeeccccCccccccCCccceEECC-------CCC-----EEEEEecCCCEEEEEEEcCCCCceE-E----
Confidence 954 332 2222 2 11 34677899999 882 3444666899999999973 2211 1
Q ss_pred CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEE-CCCeEEEEeCC
Q 008939 438 PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVC-REGHIKIWMRP 513 (548)
Q Consensus 438 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s-~Dg~I~iW~~~ 513 (548)
+..+..+.. +..++|+|++ |++++ .|+.|.+|++.
T Consensus 270 ----------------------------------------~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 270 ----------------------------------------EGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp ----------------------------------------EEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ----------------------------------------eeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 111122333 7889999974 66666 68999999654
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=1.9e-22 Score=221.52 Aligned_cols=315 Identities=12% Similarity=0.103 Sum_probs=204.8
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCC---CceEEEecCCCCCCceEEEEEcC---------Cc
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNS---NPVCHAFDQDAKDGHDLLIGLNS---------GD 199 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~---~~~~~~~~p~~~~~~~l~~g~~d---------g~ 199 (548)
.+..++|+|||++++.+.+..|++||+.++. ....+..+.. .+.+++|+|+ +.+|+++..+ +.
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~--~~~~~~~~~~~~~~v~~~~~SpD---g~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLWNVETNT--STVLIEGKKIESLRAIRYEISPD---REYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCC--CEEEECTTTTTTTTCSEEEECTT---SSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEEeCCCCEEEEECCCCc--EEEEeccccccccccceEEECCC---CCEEEEEecCccceeecceee
Confidence 4567899999997766433499999999865 5555554443 4899999999 8889998774 78
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
|++||+.+... +.+. ....+...+..++|+|+|+ .|+.++. +.|++||+.... ..........
T Consensus 93 i~~~d~~~~~~---~~l~-------~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~-~~~~~~~~~~---- 155 (723)
T 1xfd_A 93 YVLSKIPHGDP---QSLD-------PPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQ-AIRVVSTGKE---- 155 (723)
T ss_dssp EEEEESSSCCC---EECC-------CTTCCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSC-CEEEECCCBT----
T ss_pred EEEEECCCCce---Eecc-------CCccccccccccEECCCCC-EEEEEEC-CeEEEEECCCCc-eEEEecCCCC----
Confidence 89999886210 1111 1112455688999999999 6777765 799999987622 1110000000
Q ss_pred eeecCCCCCCCCeeEeeecC---------CCeEEEEECCCCCEEEEEECCC-----------------------------
Q 008939 280 SVAHPRYSKSNPIARWHICQ---------GSINSIAFSTDGTYLATVGRDG----------------------------- 321 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~sp~g~~l~s~~~dg----------------------------- 321 (548)
.+ .+.++. +.+.+++|+|||++|++++.|+
T Consensus 156 -----------~~-~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 223 (723)
T 1xfd_A 156 -----------GV-IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGS 223 (723)
T ss_dssp -----------TT-EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTS
T ss_pred -----------Cc-eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCC
Confidence 00 001111 2347899999999999987653
Q ss_pred -----eEEEEeCCCCeEEEeeeec------CCceEEEEEccCCCEEEEEeC----CCeEEEEECCCceeEEeccC-CCCC
Q 008939 322 -----YLRVFDYSKEQLICGGKSY------YGALLCCAWSMDGKYILTGGE----DDLVQVWSMEDRKVVAWGEG-HNSW 385 (548)
Q Consensus 322 -----~v~vwd~~~~~~~~~~~~~------~~~v~~l~~spdg~~l~sgs~----dg~I~vwd~~~~~~~~~~~~-h~~~ 385 (548)
.|++||+.+++....+..+ ...+..++|+|||++|++... +..|++||+.++++...+.. +..+
T Consensus 224 ~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 303 (723)
T 1xfd_A 224 ENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAW 303 (723)
T ss_dssp CCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCE
Confidence 7999999988765555543 567899999999998877643 35799999999887665543 4455
Q ss_pred eE----EEEEecCCCCCCCCCCccceeEEEEE--EeCCC------eEEEEEC-CCCeE--EeeeecCCCCCCceecCCCC
Q 008939 386 VS----GVAFDSYWSQPNSDGTAETVMYRFGS--VGQDT------RLLLWDL-EMDEI--VVPLRRGPLGGSPTFSTGSQ 450 (548)
Q Consensus 386 V~----~v~~~p~~~~~~~dg~~~~~~~~l~s--~~~Dg------~i~lwd~-~~~~~--~~~~~~~~~~~~~~~~~~~~ 450 (548)
+. .++|+| || +.|+. ...|+ .|.+||+ ..++. ...+
T Consensus 304 ~~~~~~~~~~sp-------dg------~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l---------------- 354 (723)
T 1xfd_A 304 LHRQNEEPVFSK-------DG------RKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI---------------- 354 (723)
T ss_dssp CCCCCCCCEECT-------TS------CSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS----------------
T ss_pred EeccCCCceEcC-------CC------CeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe----------------
Confidence 53 789999 98 44443 55677 5666773 33220 1111
Q ss_pred ccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeE-EEEeCCe--EEEEEC-C--CeEEEEeCCCCC---ccccC
Q 008939 451 SAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG-LIFTQES--VLTVCR-E--GHIKIWMRPGVA---ESQSS 521 (548)
Q Consensus 451 ~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~-l~fspd~--l~t~s~-D--g~I~iW~~~~~~---~~~~~ 521 (548)
..+...+.. ++|+||+ |+..+. | +.++||++.... .....
T Consensus 355 -------------------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 403 (723)
T 1xfd_A 355 -------------------------------TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS 403 (723)
T ss_dssp -------------------------------CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS
T ss_pred -------------------------------ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceec
Confidence 111223443 6899984 655544 4 889999976422 11111
Q ss_pred ----CCCc--EEEecCCCCceEeee
Q 008939 522 ----SSET--VLSTSSKDKPLLSSK 540 (548)
Q Consensus 522 ----~~~~--v~~~s~d~~~l~s~~ 540 (548)
+... ..+++||+++|+...
T Consensus 404 ~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 404 CDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp TTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred ccccCCCCeEEEEECCCCCEEEEEc
Confidence 2332 348999999888653
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=2e-20 Score=186.41 Aligned_cols=254 Identities=11% Similarity=0.141 Sum_probs=185.3
Q ss_pred CCCceeEEeCCCCCEEEEec--------CCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcE
Q 008939 130 STSMTNTNFDGKGTYIIFNV--------GDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDV 200 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~--------~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I 200 (548)
...+..++|+|+|+++++.. ...|++||..++. .+..+.. ...+..++|+|+ +..++++. .++.|
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~-~~~~~~~~~s~d---g~~l~v~~~~~~~v 113 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE--VTQAIHN-DLKPFGATINNT---TQTLWFGNTVNSAV 113 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC--EEEEEEE-SSCCCSEEEETT---TTEEEEEETTTTEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe--EEEEEec-CCCcceEEECCC---CCEEEEEecCCCEE
Confidence 34567899999999888766 2389999998854 6666664 456889999998 66555554 47899
Q ss_pred EEEEeeecccccccceeeeeeeccCC---cccCcceEEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCcccccc
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDG---SVNNSRCTSVTWVPGGDGAFVVGH--ADGNLYVYEKSKDGAGDSSFPVIKD 275 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~l~~~p~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~ 275 (548)
.+||+.+. + +.......... ......+.+++|+|+++ .++++. .++.|++||..+.
T Consensus 114 ~~~d~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~i~~~d~~~~------------ 174 (353)
T 3vgz_A 114 TAIDAKTG-----E-VKGRLVLDDRKRTEEVRPLQPRELVADDATN-TVYISGIGKESVIWVVDGGNI------------ 174 (353)
T ss_dssp EEEETTTC-----C-EEEEEESCCCCCCSSCCCCEEEEEEEETTTT-EEEEEEESSSCEEEEEETTTT------------
T ss_pred EEEeCCCC-----e-eEEEEecCCCccccccCCCCCceEEECCCCC-EEEEEecCCCceEEEEcCCCC------------
Confidence 99998762 2 22211110000 00112378999999999 555554 5788999998752
Q ss_pred cceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee----cCCceEEEEEcc
Q 008939 276 QTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS----YYGALLCCAWSM 351 (548)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~----~~~~v~~l~~sp 351 (548)
+.+..+..+...+.+++|+|++++|+++..++.|.+||+.+++.+..+.. +...+..++|+|
T Consensus 175 --------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 175 --------------KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp --------------EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred --------------ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence 12233333345578899999999999999999999999999998877654 455688899999
Q ss_pred CCCEEEEEeC-CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 352 DGKYILTGGE-DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 352 dg~~l~sgs~-dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
++++|+++.. ++.|.+||+.+++.+..+..+.. ..++|+| ||. +++++...++.|.+||+.+++.
T Consensus 241 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~-------dg~-----~l~v~~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 241 ARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNP-------ARN-----EAYVTHRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp TTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEET-------TTT-----EEEEEETTTTEEEEEETTTTEE
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECC-------CCC-----EEEEEECCCCeEEEEECCCCeE
Confidence 9997777665 59999999999988877764432 5699999 882 3556666799999999999887
Q ss_pred Eeeeec
Q 008939 431 VVPLRR 436 (548)
Q Consensus 431 ~~~~~~ 436 (548)
+..+..
T Consensus 307 ~~~~~~ 312 (353)
T 3vgz_A 307 VKTFDT 312 (353)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 765543
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1.7e-20 Score=186.85 Aligned_cols=266 Identities=14% Similarity=0.130 Sum_probs=193.8
Q ss_pred CCceEEEecCCCCCCceEEEEEc-------CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEE
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLN-------SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAF 246 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~-------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l 246 (548)
..+..++|+|+ +..|+++.. ++.|.+||+.+ ++ ...... ....+..++|+|+++.++
T Consensus 41 ~~~~~~~~s~d---g~~l~~~~~~~~~~~~~~~v~~~d~~~-----~~-~~~~~~-------~~~~~~~~~~s~dg~~l~ 104 (353)
T 3vgz_A 41 KGAYEMAYSQQ---ENALWLATSQSRKLDKGGVVYRLDPVT-----LE-VTQAIH-------NDLKPFGATINNTTQTLW 104 (353)
T ss_dssp SSEEEEEEETT---TTEEEEEECCCTTTEESEEEEEECTTT-----CC-EEEEEE-------ESSCCCSEEEETTTTEEE
T ss_pred cCccceEECCC---CCEEEEEcCCCcCCCCCccEEEEcCCC-----Ce-EEEEEe-------cCCCcceEEECCCCCEEE
Confidence 46788999998 777888774 56799999875 22 222222 234577899999998555
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC---------CCeEEEEECCCCCEEEEE
Q 008939 247 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ---------GSINSIAFSTDGTYLATV 317 (548)
Q Consensus 247 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~sp~g~~l~s~ 317 (548)
++...++.|.+||..+.. .+..+..+. ..+.+++|+|++++++++
T Consensus 105 v~~~~~~~v~~~d~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 158 (353)
T 3vgz_A 105 FGNTVNSAVTAIDAKTGE--------------------------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYIS 158 (353)
T ss_dssp EEETTTTEEEEEETTTCC--------------------------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEE
T ss_pred EEecCCCEEEEEeCCCCe--------------------------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEE
Confidence 666678999999987621 122222221 126889999999988777
Q ss_pred E--CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC----CCCCeEEEEE
Q 008939 318 G--RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG----HNSWVSGVAF 391 (548)
Q Consensus 318 ~--~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~----h~~~V~~v~~ 391 (548)
. .++.|.+||+.+++.+..+..+...+.+++|+|++++|+++..++.|.+||+.+++.+..+.. +...+..++|
T Consensus 159 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (353)
T 3vgz_A 159 GIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISL 238 (353)
T ss_dssp EESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE
T ss_pred ecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE
Confidence 6 478999999999999888775666688999999999999999999999999999988777653 5667889999
Q ss_pred ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceee
Q 008939 392 DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRD 471 (548)
Q Consensus 392 ~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d 471 (548)
+| ||. .++++...++.|.+||+.+++.+..+..
T Consensus 239 s~-------dg~-----~l~~~~~~~~~v~~~d~~~~~~~~~~~~----------------------------------- 271 (353)
T 3vgz_A 239 DT-------ARQ-----RAFITDSKAAEVLVVDTRNGNILAKVAA----------------------------------- 271 (353)
T ss_dssp ET-------TTT-----EEEEEESSSSEEEEEETTTCCEEEEEEC-----------------------------------
T ss_pred CC-------CCC-----EEEEEeCCCCEEEEEECCCCcEEEEEEc-----------------------------------
Confidence 99 882 3445555569999999999887655433
Q ss_pred cCCCCceEEeecCCCCeeEEEEeCCe--E-EEEECCCeEEEEeCCCCCccc-cCCC--CcEEEecCCCCceEeeecc
Q 008939 472 VPKLSPLVAHRVHTEPLSGLIFTQES--V-LTVCREGHIKIWMRPGVAESQ-SSSS--ETVLSTSSKDKPLLSSKVV 542 (548)
Q Consensus 472 ~~~~~~~~~~~~h~~~V~~l~fspd~--l-~t~s~Dg~I~iW~~~~~~~~~-~~~~--~~v~~~s~d~~~l~s~~~~ 542 (548)
+ . ...++|+|++ + ++...++.|.+||+.+.+... .... ..-++++||+++|..+...
T Consensus 272 ------------~-~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 272 ------------P-E-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ------------S-S-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred ------------C-C-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 1 1 1458899973 4 444478999999987765322 2222 2233889999987777655
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=6e-21 Score=184.44 Aligned_cols=222 Identities=16% Similarity=0.137 Sum_probs=162.2
Q ss_pred CC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee-cccccccceeeeeeeccCCc
Q 008939 150 GD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ-QLQDVGKKLVGAHHYNKDGS 227 (548)
Q Consensus 150 ~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~-~~~~~~~~~~~~~~~~~~~~ 227 (548)
.+ .|++||+.++. +..+..+...+.+++|+|+ +.+|+++. ++.|++||+.. .. ...... .
T Consensus 20 ~~~~i~~~d~~~~~---~~~~~~~~~~v~~~~~spd---g~~l~~~~-~~~i~~~d~~~~~~------~~~~~~-----~ 81 (297)
T 2ojh_A 20 MRSSIEIFNIRTRK---MRVVWQTPELFEAPNWSPD---GKYLLLNS-EGLLYRLSLAGDPS------PEKVDT-----G 81 (297)
T ss_dssp CCEEEEEEETTTTE---EEEEEEESSCCEEEEECTT---SSEEEEEE-TTEEEEEESSSCCS------CEECCC-----T
T ss_pred cceeEEEEeCCCCc---eeeeccCCcceEeeEECCC---CCEEEEEc-CCeEEEEeCCCCCC------ceEecc-----c
Confidence 44 99999998643 3344457789999999999 77888875 88999999875 21 111110 0
Q ss_pred ccCcceEEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGH--ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
.+...+.+++|+|++. +|+++. .++...||.++..+.. ...+..+ ..+..+
T Consensus 82 ~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~l~~~~~~~~~-------------------------~~~~~~~-~~~~~~ 134 (297)
T 2ojh_A 82 FATICNNDHGISPDGA-LYAISDKVEFGKSAIYLLPSTGGT-------------------------PRLMTKN-LPSYWH 134 (297)
T ss_dssp TCCCBCSCCEECTTSS-EEEEEECTTTSSCEEEEEETTCCC-------------------------CEECCSS-SSEEEE
T ss_pred cccccccceEECCCCC-EEEEEEeCCCCcceEEEEECCCCc-------------------------eEEeecC-CCccce
Confidence 1246789999999999 788877 4456666666532211 1111112 348889
Q ss_pred EECCCCCEEE-EEECCCeEEEEeCC--CCeEEEeeeecCCceEEEEEccCCCEEEEEe-CCCeEEEEECC-CceeEEecc
Q 008939 306 AFSTDGTYLA-TVGRDGYLRVFDYS--KEQLICGGKSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSME-DRKVVAWGE 380 (548)
Q Consensus 306 ~~sp~g~~l~-s~~~dg~v~vwd~~--~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~~-~~~~~~~~~ 380 (548)
+|+|++++|+ ++..|+.+++|++. +++ ...+..+...+.+++|+|++++|+.++ .++.++||+++ .+..+..+.
T Consensus 135 ~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 135 GWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC
T ss_pred EECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe
Confidence 9999999877 67789999999863 343 345566778899999999999888766 58999999986 556677788
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----------CeEEEEECCCCeE
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----------TRLLLWDLEMDEI 430 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----------g~i~lwd~~~~~~ 430 (548)
.|...+..++|+| || .+|+.++.+ ..|.+||+.+++.
T Consensus 214 ~~~~~~~~~~~s~-------dg------~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 214 DSAYGDWFPHPSP-------SG------DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CCSEEEEEEEECT-------TS------SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred cCCcccCCeEECC-------CC------CEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 8888999999999 98 577777665 5699999987654
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=6.1e-20 Score=181.79 Aligned_cols=251 Identities=12% Similarity=0.150 Sum_probs=173.0
Q ss_pred CCCCCceeEEeCCCCCEEEEecC--CeEEEEEcc--CCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc-CCcEEE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVG--DAIFISDLN--SQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN-SGDVYS 202 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~--d~v~vwd~~--~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~-dg~I~i 202 (548)
.|...+..++|+|+|++++++.. +.|++|++. ++....+..+.... .+.+++|+|+ +.+|+++.. ++.|.+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~d---g~~l~~~~~~~~~i~~ 110 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQ---GQFVFVGSYNAGNVSV 110 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTT---SSEEEEEETTTTEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCC---CCEEEEEecCCCeEEE
Confidence 45667888999999998887665 499999998 43333445555444 8999999999 777777765 788999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
||+... . ......... ....+.+++|+|+++ .|++++ .++.|++||+...+....
T Consensus 111 ~d~~~~--~-~~~~~~~~~-------~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~------------- 166 (343)
T 1ri6_A 111 TRLEDG--L-PVGVVDVVE-------GLDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGHLVA------------- 166 (343)
T ss_dssp EEEETT--E-EEEEEEEEC-------CCTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEE-------------
T ss_pred EECCCC--c-ccccccccc-------CCCCceEEEECCCCC-EEEEecCCCCEEEEEEecCCCceee-------------
Confidence 999420 0 011111111 234588999999998 566655 899999999975322100
Q ss_pred ecCCCCCCCCee--Eeeec-CCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCC--CeE--EEeee---ec---CCceEEE
Q 008939 282 AHPRYSKSNPIA--RWHIC-QGSINSIAFSTDGTYLATVG-RDGYLRVFDYSK--EQL--ICGGK---SY---YGALLCC 347 (548)
Q Consensus 282 ~~~~~~~~~~~~--~~~~h-~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~--~~~--~~~~~---~~---~~~v~~l 347 (548)
+. .+..+ ...+.+++|+|++++|++++ .++.|.+||+.. ++. ..... .. ...+..+
T Consensus 167 ----------~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 167 ----------QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp ----------EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred ----------ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 00 11111 24688899999999776665 789999999953 433 22222 11 2356789
Q ss_pred EEccCCCEEEE-EeCCCeEEEEECC----CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEE
Q 008939 348 AWSMDGKYILT-GGEDDLVQVWSME----DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLL 421 (548)
Q Consensus 348 ~~spdg~~l~s-gs~dg~I~vwd~~----~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~ 421 (548)
+|+|++++|++ +..++.|.+||++ +.+.+..+..+.. +..++|+| || .+|++++ .|+.|.
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~-------dg------~~l~~~~~~~~~v~ 302 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDH-------SG------KYLIAAGQKSHHIS 302 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECT-------TS------SEEEEECTTTCEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECC-------CC------CEEEEecCCCCeEE
Confidence 99999998775 4478999999998 3345555654544 88999999 88 5666666 689999
Q ss_pred EEE--CCCCeE
Q 008939 422 LWD--LEMDEI 430 (548)
Q Consensus 422 lwd--~~~~~~ 430 (548)
+|+ ..+++.
T Consensus 303 v~~~d~~~g~~ 313 (343)
T 1ri6_A 303 VYEIVGEQGLL 313 (343)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEcCCCcee
Confidence 995 446643
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=2.7e-20 Score=183.93 Aligned_cols=268 Identities=12% Similarity=0.088 Sum_probs=188.5
Q ss_pred CEEEEecCC-eEEEEEccCCCCCCeEEEecCCC--CceEEEecCCCCCCceEEE-EEcCCcEEEEEeeecccccccceee
Q 008939 143 TYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNS--NPVCHAFDQDAKDGHDLLI-GLNSGDVYSVSLRQQLQDVGKKLVG 218 (548)
Q Consensus 143 ~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~--~~~~~~~~p~~~~~~~l~~-g~~dg~I~iwdl~~~~~~~~~~~~~ 218 (548)
++++++..+ .|++||+.++. .+..+..... .+.+++|+|+ +..+++ +..++.|.+||+.+. + ...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~s~d---g~~l~v~~~~~~~v~~~d~~~~-----~-~~~ 70 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMA--VDKVITIADAGPTPMVPMVAPG---GRIAYATVNKSESLVKIDLVTG-----E-TLG 70 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE--EEEEEECTTCTTCCCCEEECTT---SSEEEEEETTTTEEEEEETTTC-----C-EEE
T ss_pred cEEEEcCCCCeEEEEECCCCc--EEEEEEcCCCCCCccceEEcCC---CCEEEEEeCCCCeEEEEECCCC-----C-eEe
Confidence 356666655 99999998744 6666664332 5899999999 655554 455789999998751 2 221
Q ss_pred eeeeccCCcccCcceEEEEEecCCCcEEEEEe------------CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 219 AHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH------------ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 219 ~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
...... ...+...+.+++|+|+++ .|+++. .++.|++||+....
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------------------- 126 (337)
T 1pby_B 71 RIDLST-PEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLS---------------------- 126 (337)
T ss_dssp EEECCB-TTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTE----------------------
T ss_pred eEEcCC-cccccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCc----------------------
Confidence 111110 001223577899999998 677765 57999999987521
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC-C--
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED-D-- 363 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d-g-- 363 (548)
.+..+.. ...+.+++|+|++++|+++ ++.|.+||+.+++.+..+..+.. ...+.|+|+++.|+..+.+ +
T Consensus 127 ----~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~ 198 (337)
T 1pby_B 127 ----RRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVM 198 (337)
T ss_dssp ----EEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEE
T ss_pred ----EEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCce
Confidence 1122221 2457789999999988887 68899999999988776654431 1133789999876655433 2
Q ss_pred ---------------------eEEEEECCCceeE-EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 364 ---------------------LVQVWSMEDRKVV-AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 364 ---------------------~I~vwd~~~~~~~-~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
.|.+||+++++.. ..+..+...+.+++|+| || .+++++ ++.|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-------dg------~~l~~~--~~~v~ 263 (337)
T 1pby_B 199 ATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-------AK------TRAFGA--YNVLE 263 (337)
T ss_dssp EEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-------TS------SEEEEE--ESEEE
T ss_pred eeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC-------CC------CEEEEe--CCeEE
Confidence 4689999988764 23445677889999999 98 566666 79999
Q ss_pred EEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EE
Q 008939 422 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VL 499 (548)
Q Consensus 422 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~ 499 (548)
+||+.+++.+..+.. ...+.+++|+|++ |+
T Consensus 264 ~~d~~~~~~~~~~~~------------------------------------------------~~~~~~~~~s~dg~~l~ 295 (337)
T 1pby_B 264 SFDLEKNASIKRVPL------------------------------------------------PHSYYSVNVSTDGSTVW 295 (337)
T ss_dssp EEETTTTEEEEEEEC------------------------------------------------SSCCCEEEECTTSCEEE
T ss_pred EEECCCCcCcceecC------------------------------------------------CCceeeEEECCCCCEEE
Confidence 999998887654432 2346789999974 77
Q ss_pred EEECCCeEEEEeCCCCC
Q 008939 500 TVCREGHIKIWMRPGVA 516 (548)
Q Consensus 500 t~s~Dg~I~iW~~~~~~ 516 (548)
+++.|+.|++||+.+.+
T Consensus 296 ~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 296 LGGALGDLAAYDAETLE 312 (337)
T ss_dssp EESBSSEEEEEETTTCC
T ss_pred EEcCCCcEEEEECcCCc
Confidence 78899999999998765
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=2.1e-20 Score=204.65 Aligned_cols=307 Identities=11% Similarity=0.034 Sum_probs=204.1
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccc-cceeeeeeec----cC---CcccCcceEEEEEecCCCcEE
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVG-KKLVGAHHYN----KD---GSVNNSRCTSVTWVPGGDGAF 246 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~-~~~~~~~~~~----~~---~~~~~~~v~~l~~~p~~~~~l 246 (548)
.+..+.|. . ..++.+..++ | +||+.+... . +.+....... .+ ...+...|.+++|+|+ . .+
T Consensus 27 ~~~~~~w~-g----~~~~~~~~~~-i-~~d~~tg~~--~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~-~~ 95 (706)
T 2z3z_A 27 YVVGLQWM-G----DNYVFIEGDD-L-VFNKANGKS--AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G-LV 95 (706)
T ss_dssp -CTTCEEE-T----TEEEEEETTE-E-EEEC---------CEEEEHHHHHTTC-----------CCCEEEEETTT-T-EE
T ss_pred cCCCCcCc-C----CeEEEEeCCc-E-EEECCCCcE--eeEEeechhHhhhhccchhccccccccCceeEEECCC-C-eE
Confidence 34445666 2 2466677777 8 999886211 0 1111111000 00 0012256999999999 5 45
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 008939 247 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVF 326 (548)
Q Consensus 247 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vw 326 (548)
+.+ .++.|++||+... ....+..+...+.+++|+|||++|+++ .|+.|++|
T Consensus 96 ~~~-~~~~i~~~d~~~~---------------------------~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~ 146 (706)
T 2z3z_A 96 VLF-TQGGLVGFDMLAR---------------------------KVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIA 146 (706)
T ss_dssp EEE-ETTEEEEEETTTT---------------------------EEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEE
T ss_pred EEE-ECCEEEEEECCCC---------------------------ceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEE
Confidence 544 4599999999752 122233345678889999999999985 68999999
Q ss_pred eCCC-----CeEEEeeeecCCc--------------eEEEEEccCCCEEEEEe---------------------------
Q 008939 327 DYSK-----EQLICGGKSYYGA--------------LLCCAWSMDGKYILTGG--------------------------- 360 (548)
Q Consensus 327 d~~~-----~~~~~~~~~~~~~--------------v~~l~~spdg~~l~sgs--------------------------- 360 (548)
|+.+ ++.......+... +.+++|+|||++|++++
T Consensus 147 ~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~ 226 (706)
T 2z3z_A 147 RGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYP 226 (706)
T ss_dssp ECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCC
T ss_pred ecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCC
Confidence 9998 7765543333332 47899999999999987
Q ss_pred ------CCCeEEEEECCCceeEEecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC-----eEEEEECCC
Q 008939 361 ------EDDLVQVWSMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT-----RLLLWDLEM 427 (548)
Q Consensus 361 ------~dg~I~vwd~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg-----~i~lwd~~~ 427 (548)
.+..|++||+++++...... .|...+..++|+| || ..|++++.|. .|++||+.+
T Consensus 227 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-------dg------~~l~~~~~~~~~~~~~v~~~d~~~ 293 (706)
T 2z3z_A 227 MAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-------DE------NILYVAEVNRAQNECKVNAYDAET 293 (706)
T ss_dssp BTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-------TS------SEEEEEEECTTSCEEEEEEEETTT
T ss_pred CCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-------CC------CEEEEEEeCCCCCeeEEEEEECCC
Confidence 45689999999987655442 5778899999999 99 6788877765 999999999
Q ss_pred CeEEeeee-cCC-----CCCCceecC--CCCccccCCeeeecccCCCCceeecC-CCCceEEeecCCCCeeE-EEEeCCe
Q 008939 428 DEIVVPLR-RGP-----LGGSPTFST--GSQSAHWDNVCPVGTLQPAPSMRDVP-KLSPLVAHRVHTEPLSG-LIFTQES 497 (548)
Q Consensus 428 ~~~~~~~~-~~~-----~~~~~~~~~--~~~~~~~d~~~~~g~~~~~~~~~d~~-~~~~~~~~~~h~~~V~~-l~fspd~ 497 (548)
++....+. ... ....+.|++ ++. .+..+..++...+|++. ....+..+..|...+.. ++|+|++
T Consensus 294 g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~------~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg 367 (706)
T 2z3z_A 294 GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ------FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKG 367 (706)
T ss_dssp CCEEEEEEEEECSSCCCCCSCCEECTTCSSE------EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTS
T ss_pred CceeeEEEEccCCCeECccCCceeecCCCCE------EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCC
Confidence 83333332 211 124567877 652 33455556678888775 55667777788888887 7999984
Q ss_pred --EE-EEECCC----eEEEEeCCCCCccccCCCCcEE--EecCCCCceEeee
Q 008939 498 --VL-TVCREG----HIKIWMRPGVAESQSSSSETVL--STSSKDKPLLSSK 540 (548)
Q Consensus 498 --l~-t~s~Dg----~I~iW~~~~~~~~~~~~~~~v~--~~s~d~~~l~s~~ 540 (548)
|+ ++..++ .|..|++.++......+...+. ++|||+++|+...
T Consensus 368 ~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~ 419 (706)
T 2z3z_A 368 TRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIF 419 (706)
T ss_dssp SEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEE
T ss_pred CEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEe
Confidence 54 445555 6777787776644444555554 8899999988763
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=4.6e-20 Score=201.96 Aligned_cols=288 Identities=9% Similarity=0.078 Sum_probs=196.5
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee---
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ--- 207 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~--- 207 (548)
..+..++|+|| ..++++.+..+++||+.++. +..+..+...+.+++|+|+ +..|+. ..++.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~Spd---G~~la~-~~~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARK---VTYLFDTNEETASLDFSPV---GDRVAY-VRNHNLYIARGGKLGE 153 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEETTTTE---EEEEECCTTCCTTCEECTT---SSEEEE-EETTEEEEEECBCTTS
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEECCCCc---eEEccCCcccccCCcCCCC---CCEEEE-EECCeEEEEecCcccc
Confidence 45789999999 77777777899999998643 3444446677899999999 777887 4789999999875
Q ss_pred --cccccccceeeeeee---c--cCCcccCcceEEEEEecCCCcEEEEEe------------------------------
Q 008939 208 --QLQDVGKKLVGAHHY---N--KDGSVNNSRCTSVTWVPGGDGAFVVGH------------------------------ 250 (548)
Q Consensus 208 --~~~~~~~~~~~~~~~---~--~~~~~~~~~v~~l~~~p~~~~~l~s~~------------------------------ 250 (548)
... ..+...... + .....+...+.++.|+||++ .|++++
T Consensus 154 ~~g~~---~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 154 GMSRA---IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp CCCCC---EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred cCCCc---EEeccCCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 210 011000000 0 00000122368999999999 777776
Q ss_pred ---CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC-----e
Q 008939 251 ---ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG-----Y 322 (548)
Q Consensus 251 ---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg-----~ 322 (548)
.+..|++||+..... .. +.....|...+.+++|+|||++|++++.|+ .
T Consensus 230 ~~~~~~~l~~~d~~~~~~-~~-----------------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 285 (706)
T 2z3z_A 230 TPSHHVTVGIYHLATGKT-VY-----------------------LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECK 285 (706)
T ss_dssp SCCCEEEEEEEETTTTEE-EE-----------------------CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEE
T ss_pred CCCCeeEEEEEECCCCce-Ee-----------------------eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeE
Confidence 346788888865210 00 000013446789999999999999988776 8
Q ss_pred EEEEeCCCC-eEEEeeee-cCC---ceEEEEEcc--CCCEEEEEeCCCeEEEEECC-CceeEEeccCCCCCeEE-EEEec
Q 008939 323 LRVFDYSKE-QLICGGKS-YYG---ALLCCAWSM--DGKYILTGGEDDLVQVWSME-DRKVVAWGEGHNSWVSG-VAFDS 393 (548)
Q Consensus 323 v~vwd~~~~-~~~~~~~~-~~~---~v~~l~~sp--dg~~l~sgs~dg~I~vwd~~-~~~~~~~~~~h~~~V~~-v~~~p 393 (548)
|++||+.++ +....... +.. .+.+++|+| ||++|+++..|+.++||+++ +++.+..+..|...+.. ++|+|
T Consensus 286 v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp 365 (706)
T 2z3z_A 286 VNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP 365 (706)
T ss_dssp EEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT
T ss_pred EEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC
Confidence 999999998 43332222 222 246789999 99999999999999999886 66777788888888877 79999
Q ss_pred CCCCCCCCCCccceeEEEE-EEeCCC----eEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCc
Q 008939 394 YWSQPNSDGTAETVMYRFG-SVGQDT----RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPS 468 (548)
Q Consensus 394 ~~~~~~~dg~~~~~~~~l~-s~~~Dg----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~ 468 (548)
|| ..|+ ++..++ .|..||+.+++.. .+
T Consensus 366 -------dg------~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l---------------------------------- 397 (706)
T 2z3z_A 366 -------KG------TRLYFESTEASPLERHFYCIDIKGGKTK-DL---------------------------------- 397 (706)
T ss_dssp -------TS------SEEEEEESSSCTTCBEEEEEETTCCCCE-ES----------------------------------
T ss_pred -------CC------CEEEEEecCCCCceEEEEEEEcCCCCce-ec----------------------------------
Confidence 88 4554 444454 6777777665421 11
Q ss_pred eeecCCCCceEEeecCCCCeeEEEEeCCe--EEEE-ECC---CeEEEEeCCCCC
Q 008939 469 MRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTV-CRE---GHIKIWMRPGVA 516 (548)
Q Consensus 469 ~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~-s~D---g~I~iW~~~~~~ 516 (548)
.|...+..++|+||+ |+.. +.+ +.|++||+.+++
T Consensus 398 --------------~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 398 --------------TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp --------------CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred --------------cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 134568889999984 5544 333 569999987664
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=1.1e-19 Score=181.06 Aligned_cols=261 Identities=13% Similarity=0.158 Sum_probs=178.5
Q ss_pred CCCCCceeEEeCCCCCEEEEecC--C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcEEEE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVG--D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSV 203 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~--d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iw 203 (548)
.+...+..++|+|+|++++++.. + .|++|++..+..+.+..+..+...+..++|+|+ +.+|+++. .++.|.+|
T Consensus 37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd---g~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA---RQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT---TTEEEEEETTTTEEEEE
T ss_pred eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC---CCEEEEEeCCCCEEEEE
Confidence 34566778999999994444432 3 999999976543455555556778999999999 77788887 67899999
Q ss_pred EeeecccccccceeeeeeeccC---CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKD---GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
++... ...+.+ ........ .......+.+++|+|+++ ++++...++.|++|++...+...
T Consensus 114 ~~~~~--g~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~------------- 176 (347)
T 3hfq_A 114 KIAAD--GALTLT-DTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLS------------- 176 (347)
T ss_dssp EECTT--SCEEEE-EEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEE-------------
T ss_pred EeCCC--CCeeec-ceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEE-------------
Confidence 99631 001111 11110000 001234588999999999 88888889999999998422210
Q ss_pred eecCCCCCCCCeeEeeec-CCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCC--CeE--EEeeeecC------CceEEEE
Q 008939 281 VAHPRYSKSNPIARWHIC-QGSINSIAFSTDGTYLATV-GRDGYLRVFDYSK--EQL--ICGGKSYY------GALLCCA 348 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~--~~~--~~~~~~~~------~~v~~l~ 348 (548)
.+..+..+ ...+..++|+|||++|+++ ..++.|.+|++.. ++. +..+.... ..+..++
T Consensus 177 ----------~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 246 (347)
T 3hfq_A 177 ----------EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR 246 (347)
T ss_dssp ----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred ----------EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence 01111111 1357789999999976664 5678999999874 553 22232222 3588899
Q ss_pred EccCCCEE-EEEeCCCeEEEEECCC---ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-CCeEEEE
Q 008939 349 WSMDGKYI-LTGGEDDLVQVWSMED---RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ-DTRLLLW 423 (548)
Q Consensus 349 ~spdg~~l-~sgs~dg~I~vwd~~~---~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~-Dg~i~lw 423 (548)
|+|||++| ++...++.|.+||+.. .+.+..+..+...+..++|+| || ++|++++. ++.|.+|
T Consensus 247 ~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-------dg------~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 247 LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP-------TE------AFVVVVNQNTDNATLY 313 (347)
T ss_dssp ECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT-------TS------SEEEEEETTTTEEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC-------CC------CEEEEEEcCCCcEEEE
Confidence 99999977 4556689999999973 355666666777889999999 99 56666665 5899999
Q ss_pred --ECCCCeEE
Q 008939 424 --DLEMDEIV 431 (548)
Q Consensus 424 --d~~~~~~~ 431 (548)
|..++++.
T Consensus 314 ~~d~~tg~l~ 323 (347)
T 3hfq_A 314 ARDLTSGKLS 323 (347)
T ss_dssp EECTTTCCEE
T ss_pred EEeCCCCeEE
Confidence 55566654
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=8.9e-21 Score=183.24 Aligned_cols=236 Identities=17% Similarity=0.127 Sum_probs=175.2
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCCeEEEEEccC-CCCCCeEEEecC-CCCceEEEecCCCCCCceEEEEE--cCCcEEE
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNS-QDKDPIKSIHFS-NSNPVCHAFDQDAKDGHDLLIGL--NSGDVYS 202 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~-~~~~~i~~~~~~-~~~~~~~~~~p~~~~~~~l~~g~--~dg~I~i 202 (548)
..|...+.+++|+|+|++++++..+.|++||+.+ +. .......+ ...+.+++|+|+ +.+|+++. .++.+.|
T Consensus 38 ~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~spd---g~~l~~~~~~~~~~~~l 112 (297)
T 2ojh_A 38 WQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPS--PEKVDTGFATICNNDHGISPD---GALYAISDKVEFGKSAI 112 (297)
T ss_dssp EEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCS--CEECCCTTCCCBCSCCEECTT---SSEEEEEECTTTSSCEE
T ss_pred ccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCC--ceEeccccccccccceEECCC---CCEEEEEEeCCCCcceE
Confidence 3467889999999999999998877999999987 54 33333333 357789999999 77899988 3355666
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|.++... ..... .. ....+.+++|+|+++.+++++..|+.++||+++..+.
T Consensus 113 ~~~~~~~----~~~~~-~~-------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~----------------- 163 (297)
T 2ojh_A 113 YLLPSTG----GTPRL-MT-------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG----------------- 163 (297)
T ss_dssp EEEETTC----CCCEE-CC-------SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-----------------
T ss_pred EEEECCC----CceEE-ee-------cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC-----------------
Confidence 6654310 11111 10 2334889999999994444788999999999764221
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCC-CCeEEEeeeecCCceEEEEEccCCCEEEEEe
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYS-KEQLICGGKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~-~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
....+..|...+.+++|+|++++|++++ .++.+++|++. .+..+..+..+...+.+++|+|++++|++++
T Consensus 164 --------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 235 (297)
T 2ojh_A 164 --------VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVS 235 (297)
T ss_dssp --------CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEE
T ss_pred --------cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEE
Confidence 1233344557899999999999888776 58999999986 4555666777778899999999999998887
Q ss_pred CC-----------CeEEEEECCCcee--EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 361 ED-----------DLVQVWSMEDRKV--VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 361 ~d-----------g~I~vwd~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
.+ ..|.+||+++++. +..+.+|...+..++|+| || .+|++++.|
T Consensus 236 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-------dg------~~l~~~~~~ 292 (297)
T 2ojh_A 236 YDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP-------DG------DEFAYVRYF 292 (297)
T ss_dssp EETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT-------TS------SEEEEEEEC
T ss_pred cCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECC-------CC------CEEEEEEec
Confidence 65 5699999998765 444557888999999999 98 567776655
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=3.1e-19 Score=176.29 Aligned_cols=255 Identities=10% Similarity=0.101 Sum_probs=174.7
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
...+++...++.|.+||+.+. + +..... .+...+ .++|+|+++.+++++..++.|++||+...
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~-----~-~~~~~~------~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~---- 72 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTL-----E-ILNQIT------LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE---- 72 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTC-----C-EEEEEE------CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS----
T ss_pred CEEEEEecCCCeEEEEeCccc-----c-eeeeEE------ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC----
Confidence 445777778899999998762 2 222111 134455 99999999844444555899999999762
Q ss_pred CCcccccccceeeeecCCCCCCCC-eeEeeecCCCeEEEEECCCCCEEEEEECCC---eEEEEeCCCCeEEEeeeecCCc
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNP-IARWHICQGSINSIAFSTDGTYLATVGRDG---YLRVFDYSKEQLICGGKSYYGA 343 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~~ 343 (548)
.. ...+..+..+..+++|+|++++|++...++ .|.+||+.+++.+..+..+ ..
T Consensus 73 ----------------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~ 129 (331)
T 3u4y_A 73 ----------------------PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YD 129 (331)
T ss_dssp ----------------------SCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TT
T ss_pred ----------------------ceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CC
Confidence 11 334444555565599999999999555553 8999999999988777644 45
Q ss_pred eEEEEEccCCCEEEE-EeCCCe-EEEEECCCceeE----EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 344 LLCCAWSMDGKYILT-GGEDDL-VQVWSMEDRKVV----AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 344 v~~l~~spdg~~l~s-gs~dg~-I~vwd~~~~~~~----~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
..+++|+|||++|++ ...++. |.+|++.....+ .....+...+..++|+| ||. ++++++..+
T Consensus 130 ~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-------dg~-----~l~v~~~~~ 197 (331)
T 3u4y_A 130 AVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-------DGN-----FAFVANLIG 197 (331)
T ss_dssp EEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-------TSS-----EEEEEETTT
T ss_pred ccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-------CCC-----EEEEEeCCC
Confidence 789999999985554 456678 999999764322 11123455689999999 982 345666678
Q ss_pred CeEEEEECCCCeE---EeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEe
Q 008939 418 TRLLLWDLEMDEI---VVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFT 494 (548)
Q Consensus 418 g~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fs 494 (548)
+.|.+||+.+++. +..+. +...+..++|+
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~s 229 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVG------------------------------------------------TNNLPGTIVVS 229 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEE------------------------------------------------CSSCCCCEEEC
T ss_pred CeEEEEECCCCcccceeeecc------------------------------------------------CCCCCceEEEC
Confidence 9999999988775 32221 12456789999
Q ss_pred CCe--EE-EEECCCeEEEEeCCCCCccc------c----CCC---CcEEEecCCCCceEeeecc
Q 008939 495 QES--VL-TVCREGHIKIWMRPGVAESQ------S----SSS---ETVLSTSSKDKPLLSSKVV 542 (548)
Q Consensus 495 pd~--l~-t~s~Dg~I~iW~~~~~~~~~------~----~~~---~~v~~~s~d~~~l~s~~~~ 542 (548)
||+ |+ +...++.|.+||+.+++... . ... ..-++++||+++|+++...
T Consensus 230 pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 293 (331)
T 3u4y_A 230 RDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI 293 (331)
T ss_dssp TTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred CCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC
Confidence 984 44 44568899999998765411 0 111 1225899999988766544
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=3e-20 Score=190.90 Aligned_cols=237 Identities=11% Similarity=0.033 Sum_probs=165.9
Q ss_pred EecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc---c--cceeeeee
Q 008939 147 FNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV---G--KKLVGAHH 221 (548)
Q Consensus 147 ~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~---~--~~~~~~~~ 221 (548)
+...+.+++|+-.. . .....+.+++++++ +.++++++.++ |++|+........ . ..+.....
T Consensus 19 F~~~~~vri~~~~~----~-----~~~~~~n~lavs~~---~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
T 2oit_A 19 FRALKKVRIFDSPE----E-----LPKERSSLLAVSNK---YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQ 85 (434)
T ss_dssp EEECCEEECSCCCS----S-----CCCSCCBCEEEETT---TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCC
T ss_pred eeeeeeEEecCCcc----c-----cCCCCccEEEEecC---CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCc
Confidence 44446788876432 1 12346788999998 77899998887 9998875421100 0 00100000
Q ss_pred eccCCcccCcceEEEEEecCCCcEEE----EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee
Q 008939 222 YNKDGSVNNSRCTSVTWVPGGDGAFV----VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI 297 (548)
Q Consensus 222 ~~~~~~~~~~~v~~l~~~p~~~~~l~----s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (548)
.....+...|++++|+|++. +|+ +++.|+.|+|||+.......... . .....+..+.+
T Consensus 86 --~~~~~~~~~v~~l~~spdg~-~lav~~~sgs~d~~v~iwd~~~~~~~~~~~-----~----------~~~~~~~~~~~ 147 (434)
T 2oit_A 86 --GLLVPMKFPIHHLALSCDNL-TLSACMMSSEYGSIIAFFDVRTFSNEAKQQ-----K----------RPFAYHKLLKD 147 (434)
T ss_dssp --CEEECCSSCEEEEEECTTSC-EEEEEEEETTTEEEEEEEEHHHHHCTTCSS-----C----------CCSEEEECCCS
T ss_pred --cccccCCCcccEEEEcCCCC-EEEEEEeccCCCceEEEEEccccccCCcCC-----c----------ceeeeeeccCC
Confidence 00011456799999999999 777 78889999999987521000000 0 00011344566
Q ss_pred cCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeE
Q 008939 298 CQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV 376 (548)
Q Consensus 298 h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~ 376 (548)
|...|.+++|+|+ +++|++++.||.|++||++++..+.....|...|.+++|+|+|++|++|+.|+.|++||++ ++..
T Consensus 148 h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~ 226 (434)
T 2oit_A 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK 226 (434)
T ss_dssp GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE
T ss_pred CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc
Confidence 8899999999997 8899999999999999999987776777788899999999999999999999999999998 5555
Q ss_pred EeccCC-------CCCeEEEEEecCCCCCCCCCCccceeEEEEE-EeCCC------eEEEEECCCC
Q 008939 377 AWGEGH-------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGS-VGQDT------RLLLWDLEMD 428 (548)
Q Consensus 377 ~~~~~h-------~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s-~~~Dg------~i~lwd~~~~ 428 (548)
..+..| ...|.+++|++ ++ .++++ ...|| .+++||++..
T Consensus 227 ~~~~~~~~~~~~~~~~v~~v~w~~-------~~------~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 227 KVIPCPPFYESDHPVRVLDVLWIG-------TY------VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEECCCTTCCTTSCEEEEEEEEEE-------TT------EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccccCCcccCCCCceeEEEEEEec-------Cc------eEEEEEccCCCccCCCCceEEEEeccC
Confidence 554433 33899999998 77 44433 43443 3999999865
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=6.1e-20 Score=196.38 Aligned_cols=238 Identities=12% Similarity=-0.003 Sum_probs=175.3
Q ss_pred CCCceeEEeCCCCCEEEEecC-C-eEEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEEEEEc---CCcEEEE
Q 008939 130 STSMTNTNFDGKGTYIIFNVG-D-AIFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLN---SGDVYSV 203 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~-d-~v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~---dg~I~iw 203 (548)
..++..++|+|||+.|++.+. + +++||+++++ ....+..+. ..+..++|+|+ ..++++.. +....+|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---~~~~lt~~~~~~~~~~~~spd----~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---ETVKLNREPINSVLDPHYGVG----RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---EEEECCSSCCSEECEECTTCS----EEEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC---CcEeeecccccccccccCCCC----eEEEEeccCCCCcceEEE
Confidence 446889999999999999765 5 9999998643 345555555 47889999986 35666654 3445666
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
.+.. ++.+... . .. ....+...+|+|+++.++++...++.+.+||+....
T Consensus 94 ~~~~--~~~g~~~-~-l~-------~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~------------------- 143 (582)
T 3o4h_A 94 KVNT--SRPGEEQ-R-LE-------AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG------------------- 143 (582)
T ss_dssp EEET--TSTTCCE-E-CT-------TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-------------------
T ss_pred EEec--cCCCccc-c-cc-------CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-------------------
Confidence 5543 0011111 0 00 122344678999987666666666667799987521
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC----CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD----GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
...+..+.. .+++|+|||++|++++.| ..|++||+.+++.. .+..|.+.+..++|+|||++|+++
T Consensus 144 --------~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~ 212 (582)
T 3o4h_A 144 --------LRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGL 212 (582)
T ss_dssp --------EEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEE
T ss_pred --------EEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEc
Confidence 111112222 789999999999988877 78999999988765 567788889999999999999988
Q ss_pred eCCC--eEEEEECCCceeEEeccCCCCCeEEEE--------EecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 360 GEDD--LVQVWSMEDRKVVAWGEGHNSWVSGVA--------FDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 360 s~dg--~I~vwd~~~~~~~~~~~~h~~~V~~v~--------~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
..++ .|++||+++++.. .+.+|...+..++ |+| || .++++++.|+.++||++ ++
T Consensus 213 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sp-------dg------~~~~~~~~~g~~~l~~~--g~ 276 (582)
T 3o4h_A 213 ETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLP-------DG------RLAVVARREGRSAVFID--GE 276 (582)
T ss_dssp ECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECT-------TS------CEEEEEEETTEEEEEET--TE
T ss_pred cCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcC-------CC------cEEEEEEcCCcEEEEEE--CC
Confidence 8888 8999999998887 7778888787777 999 99 78999999999999999 55
Q ss_pred EE
Q 008939 430 IV 431 (548)
Q Consensus 430 ~~ 431 (548)
++
T Consensus 277 ~~ 278 (582)
T 3o4h_A 277 RV 278 (582)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=3.3e-18 Score=171.29 Aligned_cols=267 Identities=10% Similarity=0.119 Sum_probs=172.8
Q ss_pred CCCCceeEEeCCCCCEEEEecC-----CeEEEEEccCC--CCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcE
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVG-----DAIFISDLNSQ--DKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDV 200 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~-----d~v~vwd~~~~--~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I 200 (548)
+...+..++|+|+|++|+++.. ..|.+|+++.. ....+.........+..+++ + +.+|+++. .++.|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--d---g~~l~~~~~~~~~v 122 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--N---GKNIVTANYSGGSI 122 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--C---SSEEEEEETTTTEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--C---CCEEEEEECCCCEE
Confidence 5566778999999998888766 38999998763 22234444445567788888 4 66676666 57889
Q ss_pred EEEEeeecccccccceeeeeeeccC----CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC-C-ccccc
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKD----GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDS-S-FPVIK 274 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~-~~~~~ 274 (548)
.+|++... .....+......... ...+...+.+++|+|+++.++++...++.|++|+++....... . +....
T Consensus 123 ~~~~~~~~--g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~ 200 (361)
T 3scy_A 123 TVFPIGQD--GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG 200 (361)
T ss_dssp EEEEBCTT--SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred EEEEeCCC--CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence 99998742 111111111111000 0112345689999999984445555689999999976331000 0 00000
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCeEE--Eee---eecCCceEEEE
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSKEQLI--CGG---KSYYGALLCCA 348 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~~~~~--~~~---~~~~~~v~~l~ 348 (548)
.. ......+...+..++|+|||++|+++. .++.|.+||+.++++. ..+ ..+......++
T Consensus 201 ~~---------------~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~ 265 (361)
T 3scy_A 201 TP---------------EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIH 265 (361)
T ss_dssp EE---------------EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEE
T ss_pred cc---------------cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEE
Confidence 00 000011235678899999999888877 6899999999877652 222 22334578999
Q ss_pred EccCCCEEEEEeCC--CeEEEEECC--Cce--eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEE
Q 008939 349 WSMDGKYILTGGED--DLVQVWSME--DRK--VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLL 421 (548)
Q Consensus 349 ~spdg~~l~sgs~d--g~I~vwd~~--~~~--~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~ 421 (548)
|+|||++|+++..+ +.|.+|+++ +++ .+..+.. ...+..++|+| || ++|++++ .++.|.
T Consensus 266 ~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp-------dg------~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 266 LSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITP-------NG------KYLLVACRDTNVIQ 331 (361)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECT-------TS------CEEEEEETTTTEEE
T ss_pred ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECC-------CC------CEEEEEECCCCCEE
Confidence 99999998776654 899999996 344 4455554 56788999999 99 5666666 678999
Q ss_pred EEE--CCCCeEE
Q 008939 422 LWD--LEMDEIV 431 (548)
Q Consensus 422 lwd--~~~~~~~ 431 (548)
+|+ ..++++.
T Consensus 332 v~~~d~~~g~~~ 343 (361)
T 3scy_A 332 IFERDQATGLLT 343 (361)
T ss_dssp EEEECTTTCCEE
T ss_pred EEEEECCCCcEe
Confidence 964 4566544
No 151
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.84 E-value=8.3e-20 Score=200.43 Aligned_cols=268 Identities=11% Similarity=0.058 Sum_probs=182.5
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC--
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-- 252 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d-- 252 (548)
.+.+++|+|+ +.++++ +.||.|++||+.+. +.. .... ........|.+++|+||++ .|++++.+
T Consensus 18 ~~~~~~~spd---g~~~~~-~~dg~i~~~d~~~g-----~~~-~~~~---~~~~~~~~v~~~~~SpDg~-~l~~~~~~~~ 83 (723)
T 1xfd_A 18 HDPEAKWISD---TEFIYR-EQKGTVRLWNVETN-----TST-VLIE---GKKIESLRAIRYEISPDRE-YALFSYNVEP 83 (723)
T ss_dssp CCCCCCBSSS---SCBCCC-CSSSCEEEBCGGGC-----CCE-EEEC---TTTTTTTTCSEEEECTTSS-EEEEEESCCC
T ss_pred cccccEEcCC---CcEEEE-eCCCCEEEEECCCC-----cEE-EEec---cccccccccceEEECCCCC-EEEEEecCcc
Confidence 4678899998 666655 78999999998762 211 1111 0000112589999999999 78887764
Q ss_pred -------CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEE
Q 008939 253 -------GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 325 (548)
Q Consensus 253 -------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~v 325 (548)
+.|++||+..... ..+ .....|...+..++|||||++|++++. +.|++
T Consensus 84 ~~~~~~~~~i~~~d~~~~~~--~~l----------------------~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~ 138 (723)
T 1xfd_A 84 IYQHSYTGYYVLSKIPHGDP--QSL----------------------DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYY 138 (723)
T ss_dssp CSSSCCCSEEEEEESSSCCC--EEC----------------------CCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEE
T ss_pred ceeecceeeEEEEECCCCce--Eec----------------------cCCccccccccccEECCCCCEEEEEEC-CeEEE
Confidence 7889999986321 001 001123345888999999999999886 79999
Q ss_pred EeCCCCeEEEeeeecCCc------------------eEEEEEccCCCEEEEEeCCC------------------------
Q 008939 326 FDYSKEQLICGGKSYYGA------------------LLCCAWSMDGKYILTGGEDD------------------------ 363 (548)
Q Consensus 326 wd~~~~~~~~~~~~~~~~------------------v~~l~~spdg~~l~sgs~dg------------------------ 363 (548)
||+.+++.......+... +.+++|+|||++|++++.|+
T Consensus 139 ~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (723)
T 1xfd_A 139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY 218 (723)
T ss_dssp ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred EECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccC
Confidence 999988766554443332 37899999999999987553
Q ss_pred ----------eEEEEECCCceeEEeccCC------CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC----CCeEEEE
Q 008939 364 ----------LVQVWSMEDRKVVAWGEGH------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ----DTRLLLW 423 (548)
Q Consensus 364 ----------~I~vwd~~~~~~~~~~~~h------~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~----Dg~i~lw 423 (548)
.|++||+.+++....+..+ ...+..++|+| || ++|++... +..|++|
T Consensus 219 ~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-------Dg------~~l~~~~~~~~~~~~i~~~ 285 (723)
T 1xfd_A 219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-------ST------KVAVTWLNRAQNVSILTLC 285 (723)
T ss_dssp CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-------SS------EEEEEEEETTSCEEEEEEE
T ss_pred CCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-------CC------eEEEEEEcCCCCeEEEEEE
Confidence 7999999988765666654 67899999999 99 67766543 3679999
Q ss_pred ECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCe----eEEEEeCCe--
Q 008939 424 DLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPL----SGLIFTQES-- 497 (548)
Q Consensus 424 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V----~~l~fspd~-- 497 (548)
|+.++++...+.. .|...+ ..++|+||+
T Consensus 286 d~~~g~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~spdg~~ 319 (723)
T 1xfd_A 286 DATTGVCTKKHED----------------------------------------------ESEAWLHRQNEEPVFSKDGRK 319 (723)
T ss_dssp ETTTCCEEEEEEE----------------------------------------------ECSSCCCCCCCCCEECTTSCS
T ss_pred eCCCCcceEEEEe----------------------------------------------ccCCEEeccCCCceEcCCCCe
Confidence 9998886654322 111222 367899985
Q ss_pred EEE--EECCC------eEEEEe-CCCCC---ccccC-CCCcE---EEecCCCCceEeee
Q 008939 498 VLT--VCREG------HIKIWM-RPGVA---ESQSS-SSETV---LSTSSKDKPLLSSK 540 (548)
Q Consensus 498 l~t--~s~Dg------~I~iW~-~~~~~---~~~~~-~~~~v---~~~s~d~~~l~s~~ 540 (548)
|+. ...|+ .|.+|| ..++. ..... ....+ .+++||++.|+...
T Consensus 320 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~ 378 (723)
T 1xfd_A 320 FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLS 378 (723)
T ss_dssp EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEE
Confidence 543 55777 577777 44443 22222 22222 47999999987553
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=2.7e-18 Score=170.92 Aligned_cols=277 Identities=14% Similarity=0.098 Sum_probs=174.9
Q ss_pred CeEEEEEccCCCCCCeE-EEecCCCCceEEEecCCCCCCceEEEEEc---CCcEEEEEeeecccccccceeeeeeeccCC
Q 008939 151 DAIFISDLNSQDKDPIK-SIHFSNSNPVCHAFDQDAKDGHDLLIGLN---SGDVYSVSLRQQLQDVGKKLVGAHHYNKDG 226 (548)
Q Consensus 151 d~v~vwd~~~~~~~~i~-~~~~~~~~~~~~~~~p~~~~~~~l~~g~~---dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 226 (548)
+.+++|+++....+... ....+...+..++|+|+ +. |+++.. ++.|++||+.... .+.+....
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spd---g~-l~~~~~~~~~~~v~~~~~~~g~---~~~~~~~~------ 82 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAK---DC-LYSVDKEDDEGGIAAWQIDGQT---AHKLNTVV------ 82 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTT---CE-EEEEEEETTEEEEEEEEEETTE---EEEEEEEE------
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccC---Ce-EEEEEecCCCceEEEEEecCCc---EEEeeeee------
Confidence 36777877653211111 12234568899999998 76 555554 5899999996421 11111111
Q ss_pred cccCcceEEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 227 SVNNSRCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 227 ~~~~~~v~~l~~~p~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
.+...+..++|+|+++ +|++++ .++.|.+|++...+....... . ... ...+. ...+...+.++
T Consensus 83 -~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~~~~~-~--------~~~---~~~p~--~~~~~~~~~~~ 146 (347)
T 3hfq_A 83 -APGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALTLTDT-V--------QHS---GHGPR--PEQDGSHIHYT 146 (347)
T ss_dssp -EESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEEEEEE-E--------ECC---CCCSS--TTCSSCCEEEE
T ss_pred -cCCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCeeecce-e--------ecC---CCCCC--ccccCCCceEE
Confidence 1456788999999999 666666 789999999975332111000 0 000 00000 00122458899
Q ss_pred EECCCCCEEEEEECCCeEEEEeCC-CCeEEE--eeeec-CCceEEEEEccCCCEEEE-EeCCCeEEEEECCC--cee--E
Q 008939 306 AFSTDGTYLATVGRDGYLRVFDYS-KEQLIC--GGKSY-YGALLCCAWSMDGKYILT-GGEDDLVQVWSMED--RKV--V 376 (548)
Q Consensus 306 ~~sp~g~~l~s~~~dg~v~vwd~~-~~~~~~--~~~~~-~~~v~~l~~spdg~~l~s-gs~dg~I~vwd~~~--~~~--~ 376 (548)
+|+|+|+++++...++.|++||+. ++++.. .+..+ ...+..++|+|||++|++ +..++.|.+|+++. ++. +
T Consensus 147 ~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 147 DLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL 226 (347)
T ss_dssp EECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe
Confidence 999999966666678899999998 554432 22222 236788999999996665 55688999999874 442 2
Q ss_pred EeccCCC------CCeEEEEEecCCCCCCCCCCccceeEEE-EEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCC
Q 008939 377 AWGEGHN------SWVSGVAFDSYWSQPNSDGTAETVMYRF-GSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGS 449 (548)
Q Consensus 377 ~~~~~h~------~~V~~v~~~p~~~~~~~dg~~~~~~~~l-~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (548)
..+.... ..+..++|+| || ++| ++...++.|.+||+.....+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~i~~sp-------dG------~~l~v~~~~~~~v~v~~~~~~g~~~~---------------- 277 (347)
T 3hfq_A 227 GIVKTIPADYTAHNGAAAIRLSH-------DG------HFLYVSNRGYNTLAVFAVTADGHLTL---------------- 277 (347)
T ss_dssp EEEESSCTTCCSCCEEEEEEECT-------TS------CEEEEEEETTTEEEEEEECGGGCEEE----------------
T ss_pred eeeeecCCCCCCCCcceeEEECC-------CC------CEEEEEeCCCCEEEEEEECCCCcEEE----------------
Confidence 3332222 4588999999 99 445 6667789999999873221111
Q ss_pred CccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEEC-CCeEEEEeCC
Q 008939 450 QSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCR-EGHIKIWMRP 513 (548)
Q Consensus 450 ~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~-Dg~I~iW~~~ 513 (548)
+..+..+...+..++|+||+ |++++. ++.|.+|++.
T Consensus 278 ----------------------------~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 278 ----------------------------IQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ----------------------------EEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ----------------------------eEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 11223345567899999984 766665 5999999654
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=5.1e-20 Score=202.04 Aligned_cols=324 Identities=9% Similarity=0.071 Sum_probs=205.1
Q ss_pred eEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCC---CceEEEecCCCCCCceEEEEEc---------CCcEEE
Q 008939 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNS---NPVCHAFDQDAKDGHDLLIGLN---------SGDVYS 202 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~---~~~~~~~~p~~~~~~~l~~g~~---------dg~I~i 202 (548)
.++|+|+|++++.+.+..|++||+.++. ....+..+.. .+.+++|+|+ +++|+.++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~SpD---g~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQ--SYTILSNRTMKSVNASNYGLSPD---RQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCC--EEEEECHHHHHTTTCSEEEECTT---SSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCc--EEEEEccccccccceeeEEECCC---CCeEEEEecCceeEEeecceEEEE
Confidence 6899999976666554499999999855 4444443322 4889999999 888988876 789999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
||+.+. + ...... ....+..++|+|||+ .|+.+. |+.|++||+..... ..... ..
T Consensus 95 ~d~~~g-----~-~~~~~~-------l~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~-~~l~~---~~------ 149 (719)
T 1z68_A 95 YDLSNG-----E-FVRGNE-------LPRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPP-FQITF---NG------ 149 (719)
T ss_dssp EETTTT-----E-ECCSSC-------CCSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCC-EECCC---CC------
T ss_pred EECCCC-----c-ccccee-------cCcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCc-EEEec---CC------
Confidence 998762 1 100000 124578899999999 677664 78999999876321 11000 00
Q ss_pred cCCCCCCCCeeEeeecCC---------CeEEEEECCCCCEEEEEECCC--------------------------------
Q 008939 283 HPRYSKSNPIARWHICQG---------SINSIAFSTDGTYLATVGRDG-------------------------------- 321 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~---------~v~~~~~sp~g~~l~s~~~dg-------------------------------- 321 (548)
.....+.+|.. ...+++|+|||++|++++.|.
T Consensus 150 -------~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~ 222 (719)
T 1z68_A 150 -------RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNP 222 (719)
T ss_dssp -------BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCC
T ss_pred -------CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCC
Confidence 00111222222 235899999999999988652
Q ss_pred --eEEEEeCCCCeEE---E-----eeeecCCceEEEEEccCCCEEEEEeCC----CeEEEEE----CCCceeEEec----
Q 008939 322 --YLRVFDYSKEQLI---C-----GGKSYYGALLCCAWSMDGKYILTGGED----DLVQVWS----MEDRKVVAWG---- 379 (548)
Q Consensus 322 --~v~vwd~~~~~~~---~-----~~~~~~~~v~~l~~spdg~~l~sgs~d----g~I~vwd----~~~~~~~~~~---- 379 (548)
.|++||+.+++.+ . .+..|...+..++|+||++++++.... ..|.+|| +.++++...+
T Consensus 223 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~ 302 (719)
T 1z68_A 223 VVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIE 302 (719)
T ss_dssp EEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEE
T ss_pred eeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccc
Confidence 7899999987642 1 123577789999999998877774432 2488899 8888776666
Q ss_pred cCCCCCeE-----EEEEecCCCCCCCCCCccceeEEEE--EEeCCC--eEEEEECCCCeEEeeeecC-CCCCCceecCCC
Q 008939 380 EGHNSWVS-----GVAFDSYWSQPNSDGTAETVMYRFG--SVGQDT--RLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGS 449 (548)
Q Consensus 380 ~~h~~~V~-----~v~~~p~~~~~~~dg~~~~~~~~l~--s~~~Dg--~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~ 449 (548)
.+|..+|. .+.|+| || ..|+ +...++ .|.+||+..++.. .+... .....+.+. ++
T Consensus 303 ~~~~~~~~~~~~~~~~~sp-------dg------~~l~~~~~~~~g~~~l~~~~~~~~~~~-~lt~~~~~v~~~~~~-d~ 367 (719)
T 1z68_A 303 ESRTGWAGGFFVSTPVFSY-------DA------ISYYKIFSDKDGYKHIHYIKDTVENAI-QITSGKWEAINIFRV-TQ 367 (719)
T ss_dssp ECSSSCSSSSSCCCCEECT-------TS------SCEEEEEECTTSCEEEEEESSCSTTCE-ECSCSSSCEEEEEEE-CS
T ss_pred ccCCceEccccCCccEECC-------CC------CeEEEEEEccCCceEEEEEECCCCceE-ecccCceEEEEEEEE-eC
Confidence 47888887 889999 98 3333 344555 6777888776632 23221 111222233 22
Q ss_pred CccccCCee-eeccc----CCCCceeecCC--CC-ceEEee----cCCCCeeEEEEeCCe--EE-EEECC--CeEEEEeC
Q 008939 450 QSAHWDNVC-PVGTL----QPAPSMRDVPK--LS-PLVAHR----VHTEPLSGLIFTQES--VL-TVCRE--GHIKIWMR 512 (548)
Q Consensus 450 ~~~~~d~~~-~~g~~----~~~~~~~d~~~--~~-~~~~~~----~h~~~V~~l~fspd~--l~-t~s~D--g~I~iW~~ 512 (548)
..+ ..... .....+|.+.. .. ....+. +|...+..+.|+|++ |+ +++.+ ..+.+||+
T Consensus 368 ------~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 368 ------DSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp ------SEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred ------CEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence 222 22222 35566776543 21 123333 266678899999974 43 44444 56888887
Q ss_pred CCCC
Q 008939 513 PGVA 516 (548)
Q Consensus 513 ~~~~ 516 (548)
.+++
T Consensus 442 ~~g~ 445 (719)
T 1z68_A 442 RTDQ 445 (719)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6544
No 154
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=7.9e-19 Score=173.28 Aligned_cols=241 Identities=13% Similarity=0.038 Sum_probs=174.3
Q ss_pred CceeEEeCCCCCEEEEe-cCC-eEEEEEccCCCCCCeEEEecCC-----CCceEEEecCCCCCCceEEEEE---------
Q 008939 132 SMTNTNFDGKGTYIIFN-VGD-AIFISDLNSQDKDPIKSIHFSN-----SNPVCHAFDQDAKDGHDLLIGL--------- 195 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~-~~d-~v~vwd~~~~~~~~i~~~~~~~-----~~~~~~~~~p~~~~~~~l~~g~--------- 195 (548)
.+..++|+|+|++++++ ..+ .|++||+.++. .+..+.... ..+.+++|+|+ +..|+++.
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~d---g~~l~~~~~~~~~~~~~ 109 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGAALSPD---GKTLAIYESPVRLELTH 109 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCEEECTT---SSEEEEEEEEEEECSSC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCC--eEeeEEcCCcccccccccceEECCC---CCEEEEEeccccccccc
Confidence 36689999999876554 444 99999998754 666665421 26889999998 77888886
Q ss_pred ---cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc
Q 008939 196 ---NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 196 ---~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
.++.|.+||+.+. +...... ....+.+++|+|++. .|+++ ++.|++||+.... .
T Consensus 110 ~~~~~~~i~v~d~~~~------~~~~~~~-------~~~~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~~-~------ 166 (337)
T 1pby_B 110 FEVQPTRVALYDAETL------SRRKAFE-------APRQITMLAWARDGS-KLYGL--GRDLHVMDPEAGT-L------ 166 (337)
T ss_dssp EEECCCEEEEEETTTT------EEEEEEE-------CCSSCCCEEECTTSS-CEEEE--SSSEEEEETTTTE-E------
T ss_pred ccccCceEEEEECCCC------cEEEEEe-------CCCCcceeEECCCCC-EEEEe--CCeEEEEECCCCc-E------
Confidence 5799999998751 2222111 234578899999998 56666 6899999997621 1
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-C-----------------------eEEEEeC
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-G-----------------------YLRVFDY 328 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-g-----------------------~v~vwd~ 328 (548)
+..+..+.. ...+.|+|++++|+....+ + .|.+||+
T Consensus 167 -------------------~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 167 -------------------VEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp -------------------EEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred -------------------eeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence 111111110 0122677777755544322 2 4789999
Q ss_pred CCCeEE-EeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 329 SKEQLI-CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 329 ~~~~~~-~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
.+++.. ..+..+...+.+++|+||+++|+++ ++.|.+||+++++.+..+.. ...+.+++|+| ||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-------dg----- 291 (337)
T 1pby_B 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVST-------DG----- 291 (337)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECT-------TS-----
T ss_pred CCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECC-------CC-----
Confidence 988764 2344566678899999999999888 79999999999988877763 45678999999 98
Q ss_pred eEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 408 MYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.+|++++.++.|.+||+.+++.+..+..
T Consensus 292 -~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 292 -STVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp -CEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred -CEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 6777788899999999999998887765
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=6e-20 Score=188.64 Aligned_cols=219 Identities=12% Similarity=0.090 Sum_probs=158.2
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...++.+++++++. ++++++.|+ +++|+......... ......... ...+... ..+...|.+++|+|
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~-~~~~~~v~~l~~sp 102 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNK---PGDDPNKIV-------DKVQGLL-VPMKFPIHHLALSC 102 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCC---TTCCTTCEE-------ECCCCEE-ECCSSCEEEEEECT
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcc---cccCccccc-------ccCcccc-ccCCCcccEEEEcC
Confidence 45689999999998 889998888 99998753110000 000000000 0011111 12457899999999
Q ss_pred CCCEEE----EEECCCeEEEEeCCCC--------e---EEEeeeecCCceEEEEEccC-CCEEEEEeCCCeEEEEECCCc
Q 008939 310 DGTYLA----TVGRDGYLRVFDYSKE--------Q---LICGGKSYYGALLCCAWSMD-GKYILTGGEDDLVQVWSMEDR 373 (548)
Q Consensus 310 ~g~~l~----s~~~dg~v~vwd~~~~--------~---~~~~~~~~~~~v~~l~~spd-g~~l~sgs~dg~I~vwd~~~~ 373 (548)
++++|+ +++.|+.|+|||++++ + .+..+.+|...|.+++|+|+ +++|++++.|+.|++||++++
T Consensus 103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182 (434)
T ss_dssp TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence 999999 7788999999998654 2 24456678999999999998 789999999999999999998
Q ss_pred eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccc
Q 008939 374 KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAH 453 (548)
Q Consensus 374 ~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (548)
..+....+|...|.+++|+| +| .+|++++.|+.|++||++ ++....+.....
T Consensus 183 ~~~~~~~~~~~~v~~v~wsp-------dg------~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~-------------- 234 (434)
T 2oit_A 183 VKVCATLPSTVAVTSVCWSP-------KG------KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPF-------------- 234 (434)
T ss_dssp EEEEEEECGGGCEEEEEECT-------TS------SCEEEEETTSCEEEECTT-CCEEEEECCCTT--------------
T ss_pred cceeeccCCCCceeEEEEcC-------CC------CEEEEEcCCCcEEEEccC-CcccccccCCcc--------------
Confidence 77777777999999999999 98 789999999999999998 554443322000
Q ss_pred cCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--E-EEEECCCe------EEEEeCCCC
Q 008939 454 WDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--V-LTVCREGH------IKIWMRPGV 515 (548)
Q Consensus 454 ~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l-~t~s~Dg~------I~iW~~~~~ 515 (548)
....|...|.++.|+++. + +..+.||. +++|+++..
T Consensus 235 --------------------------~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 235 --------------------------YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp --------------------------CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred --------------------------cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 001244579999999974 2 33555543 899998765
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=1.6e-18 Score=172.02 Aligned_cols=247 Identities=15% Similarity=0.159 Sum_probs=174.9
Q ss_pred eEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEEEE-EcCCcEEEEEeeecccc
Q 008939 135 NTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLLIG-LNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g-~~dg~I~iwdl~~~~~~ 211 (548)
.+++++++.+++++..+ .|++||+.++. .+..+.... ..+..++|+|+ +..+++. ..++.|++||+.+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~s~d---g~~~~v~~~~~~~i~~~d~~t~--- 75 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDT--VYKSCVMPDKFGPGTAMMAPD---NRTAYVLNNHYGDIYGIDLDTC--- 75 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTE--EEEEEECSSCCSSCEEEECTT---SSEEEEEETTTTEEEEEETTTT---
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCc--EEEEEecCCCCCCceeEECCC---CCEEEEEeCCCCcEEEEeCCCC---
Confidence 35677888888887766 99999998754 666666433 26889999998 6655544 46889999998751
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC------------CcEEEEEcCCCCCCCCCccccccccee
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD------------GNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d------------g~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
+ .................+.+++|+|+++ +|++++.+ +.|++||+.+... .
T Consensus 76 --~-~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~------------ 138 (349)
T 1jmx_B 76 --K-NTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-A------------ 138 (349)
T ss_dssp --E-EEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-B------------
T ss_pred --c-EEEEEEcccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCccc-c------------
Confidence 2 1111111000000123478999999999 77777755 8999999875211 0
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecC------------------
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY------------------ 341 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~------------------ 341 (548)
..+..+.. ...+.+++|+|+++ +++++ +.|.+||+.+++.+..+..+.
T Consensus 139 ----------~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (349)
T 1jmx_B 139 ----------KPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 204 (349)
T ss_dssp ----------CCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCC
T ss_pred ----------ceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCC
Confidence 11122222 24588899999999 55554 349999999888766544221
Q ss_pred --------------------------------------------------CceEEEEEcc-CCCEEEEEeCCCeEEEEEC
Q 008939 342 --------------------------------------------------GALLCCAWSM-DGKYILTGGEDDLVQVWSM 370 (548)
Q Consensus 342 --------------------------------------------------~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~ 370 (548)
..+..++|+| ++++|+++ ++.|.+||+
T Consensus 205 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~ 282 (349)
T 1jmx_B 205 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDL 282 (349)
T ss_dssp CTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEET
T ss_pred CcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEEC
Confidence 1345677889 99999888 889999999
Q ss_pred CCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 371 EDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 371 ~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
++++.+..+. ....+.+++|+| || .+|++++.++.|.+||+.+++.+..+..
T Consensus 283 ~~~~~~~~~~-~~~~~~~~~~s~-------dg------~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 283 KQRKLIKAAN-LDHTYYCVAFDK-------KG------DKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp TTTEEEEEEE-CSSCCCEEEECS-------SS------SCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred ccCeEEEEEc-CCCCccceEECC-------CC------CEEEEecCCCeEEEEeccccceeeeeec
Confidence 9998887776 334577999999 88 5677788899999999999999888765
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=3.4e-17 Score=163.87 Aligned_cols=276 Identities=13% Similarity=0.151 Sum_probs=173.5
Q ss_pred eEEEEEccCC--CCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC----CcEEEEEeeecccccccceeeeeeeccC
Q 008939 152 AIFISDLNSQ--DKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS----GDVYSVSLRQQLQDVGKKLVGAHHYNKD 225 (548)
Q Consensus 152 ~v~vwd~~~~--~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d----g~I~iwdl~~~~~~~~~~~~~~~~~~~~ 225 (548)
.|++|+++.. ....+... +...+..++|+|+ +.+|+++..+ +.|.+|++.... ..+.......
T Consensus 28 ~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spd---g~~l~~~~~~~~~~~~v~~~~~~~~~----g~~~~~~~~~-- 96 (361)
T 3scy_A 28 GIYTFRFNEETGESLPLSDA--EVANPSYLIPSAD---GKFVYSVNEFSKDQAAVSAFAFDKEK----GTLHLLNTQK-- 96 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTT---SSEEEEEECCSSTTCEEEEEEEETTT----TEEEEEEEEE--
T ss_pred CEEEEEEeCCCCCEEEeecc--cCCCCceEEECCC---CCEEEEEEccCCCCCcEEEEEEeCCC----CcEEEeeEec--
Confidence 8899987643 22223333 6778999999999 7788888886 799999987510 1111111100
Q ss_pred CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 226 GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 226 ~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
.+......+++ +++.++++...++.|.+|++...+........... ... ...+ .+.+...+.++
T Consensus 97 --~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-------~g~--~~~~---~~~~~~~~~~~ 160 (361)
T 3scy_A 97 --TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEF-------KGS--GPDK---ERQTMPHLHCV 160 (361)
T ss_dssp --CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEEC-------CCC--CSCT---TTCSSCCEEEE
T ss_pred --cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEc-------cCC--CCCc---cccCCCcceEE
Confidence 12445667777 67734444447899999999764432211110000 000 0000 00112457889
Q ss_pred EECCCCCEEEEEE-CCCeEEEEeCCCCe-------EE------EeeeecCCceEEEEEccCCCEEEEEe-CCCeEEEEEC
Q 008939 306 AFSTDGTYLATVG-RDGYLRVFDYSKEQ-------LI------CGGKSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSM 370 (548)
Q Consensus 306 ~~sp~g~~l~s~~-~dg~v~vwd~~~~~-------~~------~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~ 370 (548)
+|+|+|++|+++. .++.|++|++.... +. ............++|+|||++|++++ .++.|.+||+
T Consensus 161 ~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 240 (361)
T 3scy_A 161 RITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRY 240 (361)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEe
Confidence 9999999776665 47899999887433 21 11222345678999999999887777 5899999999
Q ss_pred CCcee--EEec---cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-C-CCeEEEEECC--CCeEEeeeecCCCCC
Q 008939 371 EDRKV--VAWG---EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-Q-DTRLLLWDLE--MDEIVVPLRRGPLGG 441 (548)
Q Consensus 371 ~~~~~--~~~~---~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~-Dg~i~lwd~~--~~~~~~~~~~~~~~~ 441 (548)
++++. +..+ ..+......++|+| || ++|+++. . ++.|.+|++. +++... +
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~i~~sp-------dg------~~l~v~~~~~~~~i~v~~~~~~~g~~~~-~------- 299 (361)
T 3scy_A 241 ADGMLDEIQTVAADTVNAQGSGDIHLSP-------DG------KYLYASNRLKADGVAIFKVDETNGTLTK-V------- 299 (361)
T ss_dssp ETTEEEEEEEEESCSSCCCCEEEEEECT-------TS------SEEEEEECSSSCEEEEEEECTTTCCEEE-E-------
T ss_pred cCCceEEeEEEecCCCCCCCcccEEECC-------CC------CEEEEECCCCCCEEEEEEEcCCCCcEEE-e-------
Confidence 87754 2222 33445678999999 99 5665544 4 5899999986 333211 1
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEE-CCCeEEEEeCC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVC-REGHIKIWMRP 513 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s-~Dg~I~iW~~~ 513 (548)
..+.. ...+..++|+||+ |++++ .++.|.+|++.
T Consensus 300 -------------------------------------~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 300 -------------------------------------GYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -------------------------------------EEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -------------------------------------eEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 11111 3457789999984 76666 67999997654
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=9.4e-19 Score=187.15 Aligned_cols=198 Identities=11% Similarity=0.029 Sum_probs=142.3
Q ss_pred CCCceEEEecCCCCCCceEEEEEc-CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLN-SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
...+.+++|+|+ |..|+.++. +|.+.||++.. ........ .+...+..++|+|+ + ++++++.
T Consensus 21 ~~~~~~~~~~~D---G~~la~~s~~~g~~~lw~~~~------g~~~~lt~------~~~~~~~~~~~spd-~-~l~~~~~ 83 (582)
T 3o4h_A 21 AVEKYSLQGVVD---GDKLLVVGFSEGSVNAYLYDG------GETVKLNR------EPINSVLDPHYGVG-R-VILVRDV 83 (582)
T ss_dssp HSCEEEEEEEET---TTEEEEEEEETTEEEEEEEET------TEEEECCS------SCCSEECEECTTCS-E-EEEEEEC
T ss_pred ccchheeecCCC---CCeEEEEEccCCceeEEEEcC------CCcEeeec------ccccccccccCCCC-e-EEEEecc
Confidence 446899999999 778988877 99999999854 12211111 12357899999999 5 7777765
Q ss_pred ---CCcEEEEEcCC--CCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCE-EEEEECCCeEEE
Q 008939 252 ---DGNLYVYEKSK--DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTY-LATVGRDGYLRV 325 (548)
Q Consensus 252 ---dg~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~-l~s~~~dg~v~v 325 (548)
+....+|.++. .+... .+. . ...+...+|+|+++. +++...++.+.+
T Consensus 84 ~~g~~~~~l~~~~~~~~g~~~-~l~-------------------------~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l 136 (582)
T 3o4h_A 84 SKGAEQHALFKVNTSRPGEEQ-RLE-------------------------A-VKPMRILSGVDTGEAVVFTGATEDRVAL 136 (582)
T ss_dssp STTSCCEEEEEEETTSTTCCE-ECT-------------------------T-SCSBEEEEEEECSSCEEEEEECSSCEEE
T ss_pred CCCCcceEEEEEeccCCCccc-ccc-------------------------C-CCCceeeeeCCCCCeEEEEecCCCCceE
Confidence 55567766654 33211 000 0 023445678887753 333344455669
Q ss_pred EeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC----CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCC
Q 008939 326 FDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED----DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSD 401 (548)
Q Consensus 326 wd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d----g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~d 401 (548)
||+.++++......+ . .+++|+|||++|++++.+ ..|++||+++++.. .+..|...+..++|+| |
T Consensus 137 ~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~Sp-------D 205 (582)
T 3o4h_A 137 YALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISP-------G 205 (582)
T ss_dssp EEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECT-------T
T ss_pred EEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECC-------C
Confidence 999988776554433 3 789999999999988777 78999999988765 5677889999999999 9
Q ss_pred CCccceeEEEEEEeCCC--eEEEEECCCCeEE
Q 008939 402 GTAETVMYRFGSVGQDT--RLLLWDLEMDEIV 431 (548)
Q Consensus 402 g~~~~~~~~l~s~~~Dg--~i~lwd~~~~~~~ 431 (548)
| +.|+++..++ .|++||+.+++..
T Consensus 206 G------~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 206 M------KVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp S------CEEEEEECSSCEEEEEECTTTCCEE
T ss_pred C------CEEEEccCCCeeEEEEEcCCCCcEE
Confidence 9 6888888888 8999999988776
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=1.1e-17 Score=166.11 Aligned_cols=271 Identities=10% Similarity=0.019 Sum_probs=175.0
Q ss_pred EEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEE
Q 008939 178 CHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYV 257 (548)
Q Consensus 178 ~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~v 257 (548)
.++++++ +.+++++..++.|++||+.+. +........ ....+..++|+|+++.++++...++.|++
T Consensus 4 g~~~~~~---~~~~v~~~~~~~v~~~d~~~~------~~~~~~~~~-----~~~~~~~~~~s~dg~~~~v~~~~~~~i~~ 69 (349)
T 1jmx_B 4 GPALKAG---HEYMIVTNYPNNLHVVDVASD------TVYKSCVMP-----DKFGPGTAMMAPDNRTAYVLNNHYGDIYG 69 (349)
T ss_dssp CCCCCTT---CEEEEEEETTTEEEEEETTTT------EEEEEEECS-----SCCSSCEEEECTTSSEEEEEETTTTEEEE
T ss_pred cccccCC---CEEEEEeCCCCeEEEEECCCC------cEEEEEecC-----CCCCCceeEECCCCCEEEEEeCCCCcEEE
Confidence 3455555 778899999999999998761 222222110 11257899999999845566667899999
Q ss_pred EEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec------CCCeEEEEECCCCCEEEEEECC-----------
Q 008939 258 YEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC------QGSINSIAFSTDGTYLATVGRD----------- 320 (548)
Q Consensus 258 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~sp~g~~l~s~~~d----------- 320 (548)
||+.+.. .+..+..+ ...+.+++|+|+|++|+++..+
T Consensus 70 ~d~~t~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 70 IDLDTCK--------------------------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp EETTTTE--------------------------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred EeCCCCc--------------------------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 9987521 11111111 1237789999999999998865
Q ss_pred -CeEEEEeCCCCeE---EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCC------------
Q 008939 321 -GYLRVFDYSKEQL---ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS------------ 384 (548)
Q Consensus 321 -g~v~vwd~~~~~~---~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~------------ 384 (548)
+.|.+||+.+++. +..+. +...+.+++|+|||+ +++++. .|.+||+.+++.+..+..+..
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY 199 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred CCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCcccee
Confidence 8999999987543 33333 334688999999999 666544 499999999988776653320
Q ss_pred ------------CeEEEEEecCCCCCCCCCCc-----cceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecC
Q 008939 385 ------------WVSGVAFDSYWSQPNSDGTA-----ETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFST 447 (548)
Q Consensus 385 ------------~V~~v~~~p~~~~~~~dg~~-----~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 447 (548)
....+++++ |+.. .....++.....++.+.+|++.. .......+.+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~-------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~sp 264 (349)
T 1jmx_B 200 FWPHQSPRHEFSMLYTIARFK-------DDKQDPATADLLYGYLSVDLKTGKTHTQEFAD--------LTELYFTGLRSP 264 (349)
T ss_dssp CCCCCCTTCEEEEEEEEEEC--------------CCCEEEEEEEEEETTTCCEEEEEEEE--------CSSCEEEEEECS
T ss_pred eecCCCcceeEEeeeeeeecC-------CCcCCccccccceeEEEEeccCCcEEeccccc--------CCCcceeeEecC
Confidence 234466654 3200 01112233455667888888743 112233445555
Q ss_pred -CCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 448 -GSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 448 -~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
++. .+.++ +..+.+||+.+.+.+..+..+ ..+.+++|+|++ |++++.++.|++||+.+.+
T Consensus 265 ~dg~------~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 265 KDPN------QIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp SCTT------EEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred CCCC------EEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 442 22222 566788888887776666533 457899999984 7778889999999987654
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=3.7e-18 Score=187.24 Aligned_cols=300 Identities=11% Similarity=0.037 Sum_probs=193.8
Q ss_pred eEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccC---cceEEEEEecCCCcEEEEEeC--
Q 008939 177 VCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNN---SRCTSVTWVPGGDGAFVVGHA-- 251 (548)
Q Consensus 177 ~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~l~~~p~~~~~l~s~~~-- 251 (548)
..++|+|+ +. ++....++.|++||+.+. +. ..... .+. ..+.+++|+|||+ .|+.++.
T Consensus 19 ~~~~~s~d---g~-~~~~~~d~~i~~~~~~~g-----~~-~~~~~------~~~~~~~~~~~~~~SpDg~-~la~~~~~~ 81 (719)
T 1z68_A 19 FFPNWISG---QE-YLHQSADNNIVLYNIETG-----QS-YTILS------NRTMKSVNASNYGLSPDRQ-FVYLESDYS 81 (719)
T ss_dssp CCCEESSS---SE-EEEECTTSCEEEEESSSC-----CE-EEEEC------HHHHHTTTCSEEEECTTSS-EEEEEEEEE
T ss_pred CccEECCC---Ce-EEEEcCCCCEEEEEcCCC-----cE-EEEEc------cccccccceeeEEECCCCC-eEEEEecCc
Confidence 47789998 64 555567999999998762 11 11111 011 2488999999999 7777765
Q ss_pred -------CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 252 -------DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 252 -------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
++.|++||+..... .... .+ ...+..++|||||+.|+++. |+.|+
T Consensus 82 ~~~~~s~~~~i~~~d~~~g~~-~~~~-----------------------~l---~~~~~~~~~SPDG~~la~~~-~~~i~ 133 (719)
T 1z68_A 82 KLWRYSYTATYYIYDLSNGEF-VRGN-----------------------EL---PRPIQYLCWSPVGSKLAYVY-QNNIY 133 (719)
T ss_dssp ECSSSCEEEEEEEEETTTTEE-CCSS-----------------------CC---CSSBCCEEECSSTTCEEEEE-TTEEE
T ss_pred eeEEeecceEEEEEECCCCcc-ccce-----------------------ec---CcccccceECCCCCEEEEEE-CCeEE
Confidence 78999999986321 0000 00 14578899999999999986 78999
Q ss_pred EEeCCCCeEEEee-eecCCce-----------------EEEEEccCCCEEEEEeCCC-----------------------
Q 008939 325 VFDYSKEQLICGG-KSYYGAL-----------------LCCAWSMDGKYILTGGEDD----------------------- 363 (548)
Q Consensus 325 vwd~~~~~~~~~~-~~~~~~v-----------------~~l~~spdg~~l~sgs~dg----------------------- 363 (548)
+||+.+++..... .++...+ .+++|+|||++|++++.|.
T Consensus 134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (719)
T 1z68_A 134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP 213 (719)
T ss_dssp EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence 9999888765432 2222222 4899999999999987652
Q ss_pred -----------eEEEEECCCceeE--------EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC----CeE
Q 008939 364 -----------LVQVWSMEDRKVV--------AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD----TRL 420 (548)
Q Consensus 364 -----------~I~vwd~~~~~~~--------~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D----g~i 420 (548)
.|++||+.+++.+ ..+.+|...+..++|+| |+ +++++.... ..|
T Consensus 214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-------D~------~~~~~~~~~~~~~~~l 280 (719)
T 1z68_A 214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-------DE------RVCLQWLKRVQNVSVL 280 (719)
T ss_dssp CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-------SS------EEEEEEEESSTTEEEE
T ss_pred CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-------CC------eEEEEEeccccCeEEE
Confidence 7899999987653 22346888999999999 98 666664432 358
Q ss_pred EEEE----CCCCeEEeeee----cC-CCCC-----CceecCCCCccccCCeeeecccC--CCCceeecCCCCceEEeecC
Q 008939 421 LLWD----LEMDEIVVPLR----RG-PLGG-----SPTFSTGSQSAHWDNVCPVGTLQ--PAPSMRDVPKLSPLVAHRVH 484 (548)
Q Consensus 421 ~lwd----~~~~~~~~~~~----~~-~~~~-----~~~~~~~~~~~~~d~~~~~g~~~--~~~~~~d~~~~~~~~~~~~h 484 (548)
.+|| +.++++...+. .. .... .+.|++++.... +.....+ ..+.+|++...+ ...+..+
T Consensus 281 ~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~----~~~~~~~g~~~l~~~~~~~~~-~~~lt~~ 355 (719)
T 1z68_A 281 SICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYY----KIFSDKDGYKHIHYIKDTVEN-AIQITSG 355 (719)
T ss_dssp EEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEE----EEEECTTSCEEEEEESSCSTT-CEECSCS
T ss_pred EEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEE----EEEEccCCceEEEEEECCCCc-eEecccC
Confidence 9999 88887766552 21 2233 677888874211 0111112 235556665544 4455556
Q ss_pred CCCeeEEEEeCC-eEEEEEC-----CCeEEEEeCCC--CC--ccccC-----CCCc--EEEecCCCCceEee
Q 008939 485 TEPLSGLIFTQE-SVLTVCR-----EGHIKIWMRPG--VA--ESQSS-----SSET--VLSTSSKDKPLLSS 539 (548)
Q Consensus 485 ~~~V~~l~fspd-~l~t~s~-----Dg~I~iW~~~~--~~--~~~~~-----~~~~--v~~~s~d~~~l~s~ 539 (548)
...|..+.+..+ .|+..+. ++.+++|.++. +. ..... +... ..+++||+++|+..
T Consensus 356 ~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~ 427 (719)
T 1z68_A 356 KWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALV 427 (719)
T ss_dssp SSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEE
T ss_pred ceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEE
Confidence 666888777632 3554444 48899998754 21 11111 2233 34789999988754
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=3.9e-17 Score=179.57 Aligned_cols=248 Identities=13% Similarity=0.175 Sum_probs=165.3
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCC---c--eEEEecCCCCCCceEEEEEcC---------
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSN---P--VCHAFDQDAKDGHDLLIGLNS--------- 197 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~---~--~~~~~~p~~~~~~~l~~g~~d--------- 197 (548)
....++|+|+|.+++.+ +++|++||+.++. ....+..+... + ..++|+|+ +..|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Spd---g~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ-ENNILVFNAEYGN--SSVFLENSTFDEFGHSINDYSISPD---GQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCEEECSSSEEEEEE-TTEEEEEETTTCC--EEEEECTTTTTTCCSCCCEEEECTT---SSEEEEEEEEEECSSSCEE
T ss_pred cccccEECCCCcEEEEc-CCcEEEEECCCCc--eEEEEechhhhhhcccccceEECCC---CCEEEEEECCeeeEEEccc
Confidence 35579999999988886 5599999999865 44444444322 2 33788999 8889988876
Q ss_pred CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
+.+++||+.+. ++... ..+...+...+|+|||+ .|+.+ .|+.|++|++............
T Consensus 92 ~~~~~~d~~~~------~~~~l-------~~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~~~~~~~~~~lt~~g----- 151 (740)
T 4a5s_A 92 ASYDIYDLNKR------QLITE-------ERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTG----- 151 (740)
T ss_dssp EEEEEEETTTT------EECCS-------SCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCSCC-----
T ss_pred eEEEEEECCCC------cEEEc-------ccCCCcceeeEECCCCC-EEEEE-ECCeEEEEECCCCceEEEcCCC-----
Confidence 66789998862 11111 11466799999999999 66666 4689999998753211111100
Q ss_pred eeeeecCCCCCCCCeeEeeecC---------CCeEEEEECCCCCEEEEEECCC---------------------------
Q 008939 278 QFSVAHPRYSKSNPIARWHICQ---------GSINSIAFSTDGTYLATVGRDG--------------------------- 321 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~sp~g~~l~s~~~dg--------------------------- 321 (548)
.....+.++. +....+.|||||++||....|.
T Consensus 152 ------------~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp 219 (740)
T 4a5s_A 152 ------------KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYP 219 (740)
T ss_dssp ------------BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECC
T ss_pred ------------CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCC
Confidence 0001111111 2334689999999999875331
Q ss_pred ---------eEEEEeCCC---C---eEEEeee------ecCCceEEEEEccCCCEEEEEeC----CCeEEEEECCCce--
Q 008939 322 ---------YLRVFDYSK---E---QLICGGK------SYYGALLCCAWSMDGKYILTGGE----DDLVQVWSMEDRK-- 374 (548)
Q Consensus 322 ---------~v~vwd~~~---~---~~~~~~~------~~~~~v~~l~~spdg~~l~sgs~----dg~I~vwd~~~~~-- 374 (548)
.|++||+.+ + +.. .+. +|...+..++|+|||++++.... +..|.+||+.+++
T Consensus 220 ~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~ 298 (740)
T 4a5s_A 220 KAGAVNPTVKFFVVNTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR 298 (740)
T ss_dssp BTTSCCCEEEEEEEETTSCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE
T ss_pred CCcCcCCeeEEEEEECCCCCCCCcceEE-EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccc
Confidence 588899988 7 333 232 26778999999999997665432 3479999999886
Q ss_pred --eEE--ec--cCCCCCeE-----EEEEecCCCCCCCCCCccceeEEEE-EEeC-C--CeEEEEECCCCeEE
Q 008939 375 --VVA--WG--EGHNSWVS-----GVAFDSYWSQPNSDGTAETVMYRFG-SVGQ-D--TRLLLWDLEMDEIV 431 (548)
Q Consensus 375 --~~~--~~--~~h~~~V~-----~v~~~p~~~~~~~dg~~~~~~~~l~-s~~~-D--g~i~lwd~~~~~~~ 431 (548)
+.. .+ ..|..+|. .+.|+| || +.|+ ..+. + ..|.+||+..+++.
T Consensus 299 ~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp-------DG------~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 299 WNCLVARQHIEMSTTGWVGRFRPSEPHFTL-------DG------NSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp EEECGGGCEEEECSSSCSSSSSCCCCEECT-------TS------SEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred cceeEEEEeeeccCCceEccCcCCCceEcC-------CC------CEEEEEEEcCCCceEEEEEECCCCceE
Confidence 322 22 45777765 788999 99 4555 5553 3 46888888876544
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=3.3e-16 Score=157.19 Aligned_cols=271 Identities=12% Similarity=0.101 Sum_probs=171.7
Q ss_pred eEEEEEccCC--CCCCeEEEec-CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQ--DKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~--~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|++|+++.. ....+..... ....+..++|+|+ +.+|+++..+ .|.+|++... ++ +........
T Consensus 15 ~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd---g~~l~~~~~~-~v~~~~~~~~----g~-~~~~~~~~~---- 81 (365)
T 1jof_A 15 AIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE---RKNIYGAAMK-KWSSFAVKSP----TE-IVHEASHPI---- 81 (365)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT---SSEEEEEEBT-EEEEEEEEET----TE-EEEEEEEEC----
T ss_pred cEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCC---CCEEEEEccc-eEEEEEECCC----CC-EEEeeEeec----
Confidence 6777776532 2112222211 2347889999999 7788888887 9999998621 11 111111100
Q ss_pred cCcceEEEEEecCCCc-EEEEEe-------------CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeE
Q 008939 229 NNSRCTSVTWVPGGDG-AFVVGH-------------ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIAR 294 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~-~l~s~~-------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (548)
.+.+.+++|+|+++. +++++. .+|.+.+|+++..+..... +..
T Consensus 82 -~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~----------------------~~~ 138 (365)
T 1jof_A 82 -GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKN----------------------VQN 138 (365)
T ss_dssp -CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEE----------------------EEE
T ss_pred -CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcce----------------------Eee
Confidence 122456899999983 234553 6899999999753321100 111
Q ss_pred ee-ecCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCC-CCeEE--Eeee--ecCCceEEEEEccCCCEEEEEeC-CCeEE
Q 008939 295 WH-ICQGSINSIAFSTDGTYLATVGR-DGYLRVFDYS-KEQLI--CGGK--SYYGALLCCAWSMDGKYILTGGE-DDLVQ 366 (548)
Q Consensus 295 ~~-~h~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~~-~~~~~--~~~~--~~~~~v~~l~~spdg~~l~sgs~-dg~I~ 366 (548)
+. .+...+.+++|+|||++|+++.. ++.|++||+. ++++. ..+. .+...+..++|+|||++|+++++ ++.|.
T Consensus 139 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~ 218 (365)
T 1jof_A 139 YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRIC 218 (365)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEE
Confidence 11 13467899999999998887764 6799999998 77653 2333 23567899999999999888775 68999
Q ss_pred EEECC--CceeE------Eecc----CCCC------CeEEEE-EecCCCCCCCCCCccceeEEEEEEeC-CC-----eEE
Q 008939 367 VWSME--DRKVV------AWGE----GHNS------WVSGVA-FDSYWSQPNSDGTAETVMYRFGSVGQ-DT-----RLL 421 (548)
Q Consensus 367 vwd~~--~~~~~------~~~~----~h~~------~V~~v~-~~p~~~~~~~dg~~~~~~~~l~s~~~-Dg-----~i~ 421 (548)
+|+++ +++.. ..+. +|.. .+..++ |+| || ++|+++.. +. .|.
T Consensus 219 v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-------dG------~~l~v~~~~~~~~~~~~i~ 285 (365)
T 1jof_A 219 EYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-------SG------KYMFASSRANKFELQGYIA 285 (365)
T ss_dssp EEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-------TS------SEEEEEEEESSTTSCCEEE
T ss_pred EEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-------CC------CEEEEECCCCCCCCCCeEE
Confidence 99875 45432 1222 1222 588999 999 99 55555543 23 899
Q ss_pred EEECC-CCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeC---C-
Q 008939 422 LWDLE-MDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ---E- 496 (548)
Q Consensus 422 lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp---d- 496 (548)
+|++. +++....... ...+...+..++|+| |
T Consensus 286 v~~~~~~g~~~~~~~~--------------------------------------------~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 286 GFKLRDCGSIEKQLFL--------------------------------------------SPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp EEEECTTSCEEEEEEE--------------------------------------------EECSSCCTTCCCEEECTTCT
T ss_pred EEEECCCCCEEEeeee--------------------------------------------eecCCCCcccceecCCCcCC
Confidence 99996 4543321110 111233456788888 5
Q ss_pred -eEEEEEC-CCeEEEEeCCCC
Q 008939 497 -SVLTVCR-EGHIKIWMRPGV 515 (548)
Q Consensus 497 -~l~t~s~-Dg~I~iW~~~~~ 515 (548)
.|++++. ++.|++|++...
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 3777775 499999998764
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=1.7e-16 Score=159.22 Aligned_cols=250 Identities=11% Similarity=0.078 Sum_probs=164.7
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEcc-CCCCCCeEEEec-CCCCceEEEecCCCCCCce--EEEEE-----------
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLN-SQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHD--LLIGL----------- 195 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~-~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~--l~~g~----------- 195 (548)
..+..++|+|+|++++++..+.|.+|++. ++. .+..... ....+.+++|+|+ ++. ++++.
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~--~~~~~~~~~~g~~~~~~~spd---g~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTE--IVHEASHPIGGHPRANDADTN---TRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTE--EEEEEEEECCSSGGGGCTTSC---CEEEEEEECSSTTCCEEEEEE
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCC--EEEeeEeecCCCCccEEECCC---CCEEEEEEecCCcceecccee
Confidence 35668999999998887666699999997 543 3222221 1134777899998 774 44442
Q ss_pred --cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCccc
Q 008939 196 --NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 196 --~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
.+|.+.+|++... ++ +......... .+...+.+++|+|+++ +|+++. .++.|++||++..+..
T Consensus 115 ~~~~g~v~v~~~~~~----g~-~~~~~~~~~~--~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~------ 180 (365)
T 1jof_A 115 YKFAGYGNVFSVSET----GK-LEKNVQNYEY--QENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEV------ 180 (365)
T ss_dssp SSSCCEEEEEEECTT----CC-EEEEEEEEEC--CTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCE------
T ss_pred ecCCceEEEEccCCC----Cc-CcceEeeEEe--CCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCE------
Confidence 6889999998641 11 1111110000 1345789999999998 666655 4689999999721211
Q ss_pred ccccceeeeecCCCCCCCCeeEee--ecCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCC--CCeEEE---eee------
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWH--ICQGSINSIAFSTDGTYLATVGR-DGYLRVFDYS--KEQLIC---GGK------ 338 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~~--~~~~~~---~~~------ 338 (548)
..+..+. .|...+..++|+|||++|+++.. ++.|.+|++. ++++.. .+.
T Consensus 181 -----------------~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 181 -----------------ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp -----------------EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred -----------------EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 0011122 12456899999999999988775 6899999875 565421 121
Q ss_pred -ecCC------ceEEEE-EccCCCEEEEEeCC-C-----eEEEEECC-CceeEE---eccCCCCCeEEEEEecCCCCCCC
Q 008939 339 -SYYG------ALLCCA-WSMDGKYILTGGED-D-----LVQVWSME-DRKVVA---WGEGHNSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 339 -~~~~------~v~~l~-~spdg~~l~sgs~d-g-----~I~vwd~~-~~~~~~---~~~~h~~~V~~v~~~p~~~~~~~ 400 (548)
+|.. .+..++ |+|||++|+++..+ + .|.+|+++ +++... .+..+...+..++|+|
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp------- 316 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP------- 316 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE-------
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC-------
Confidence 1122 488999 99999988876643 2 89999996 565443 2333555567788988
Q ss_pred C---CCccceeEEEEEEeC-CCeEEEEECCCCe
Q 008939 401 D---GTAETVMYRFGSVGQ-DTRLLLWDLEMDE 429 (548)
Q Consensus 401 d---g~~~~~~~~l~s~~~-Dg~i~lwd~~~~~ 429 (548)
+ | .+|++++. ++.|.+|++....
T Consensus 317 ~~~dg------~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 317 CPWSD------EWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp CTTCT------TEEEEECSSSCEEEEEEEETTE
T ss_pred CCcCC------CEEEEEEcCCCeEEEEEEchhh
Confidence 4 5 57777776 4899999998763
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=7.6e-17 Score=162.79 Aligned_cols=238 Identities=13% Similarity=0.066 Sum_probs=153.6
Q ss_pred EEeCCCCCEEEEecC-C---eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 136 TNFDGKGTYIIFNVG-D---AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~-d---~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
.+|+|||++|++... + .|++||+.++. .......+...+...+|+|+ +..|+.+..++.|++||+.+.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~spd---g~~l~~~~~~~~l~~~d~~~g--- 112 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV--ATQLTEGRGDNTFGGFLSPD---DDALFYVKDGRNLMRVDLATL--- 112 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCE--EEECCCSSCBCSSSCEECTT---SSEEEEEETTTEEEEEETTTC---
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCc--eEEeeeCCCCCccceEEcCC---CCEEEEEeCCCeEEEEECCCC---
Confidence 789999999998776 3 48888988644 33333333334456789999 888999999999999998762
Q ss_pred cccceeeeeeeccCCcccCcceEEEE--EecCCCcEEEEE----------------------eCCCcEEEEEcCCCCCCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVT--WVPGGDGAFVVG----------------------HADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~--~~p~~~~~l~s~----------------------~~dg~v~vwd~~~~~~~~ 267 (548)
+... ... .+...+.... ++|++. +++.. ..+..|++||+.+.
T Consensus 113 --~~~~-~~~------~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g---- 178 (388)
T 3pe7_A 113 --EENV-VYQ------VPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG---- 178 (388)
T ss_dssp --CEEE-EEE------CCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC----
T ss_pred --ccee-eee------chhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhccCCcceEEEEECCCC----
Confidence 1111 111 1233343333 478888 55532 23467888888752
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECC------CeEEEEeCCCCeEEEeeeec
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRD------GYLRVFDYSKEQLICGGKSY 340 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~d------g~v~vwd~~~~~~~~~~~~~ 340 (548)
....+..+...+..++|+| ||+.|+.+..+ ..|.++|+..++... +..+
T Consensus 179 -----------------------~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~ 234 (388)
T 3pe7_A 179 -----------------------ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTH 234 (388)
T ss_dssp -----------------------CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCC
T ss_pred -----------------------ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeC
Confidence 1233334456789999999 99999888764 378888887655433 3333
Q ss_pred C--CceEEEEEccCCCEEEEEeC-CC----eEEEEECCCcee--EEeccCCCCC---eEEEEEecCCCCCCCCCCcccee
Q 008939 341 Y--GALLCCAWSMDGKYILTGGE-DD----LVQVWSMEDRKV--VAWGEGHNSW---VSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 341 ~--~~v~~l~~spdg~~l~sgs~-dg----~I~vwd~~~~~~--~~~~~~h~~~---V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
. ..+..++|+|||+.|+..+. ++ .|.+||+++++. +..+.++... ...+.|+| ||
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp-------dg------ 301 (388)
T 3pe7_A 235 AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG-------DG------ 301 (388)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE-------EE------
T ss_pred CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc-------CC------
Confidence 3 25778899999997765443 22 399999998864 3333331110 11236888 88
Q ss_pred EEEEEE---------eCCCeEEEEECCCCeEEe
Q 008939 409 YRFGSV---------GQDTRLLLWDLEMDEIVV 432 (548)
Q Consensus 409 ~~l~s~---------~~Dg~i~lwd~~~~~~~~ 432 (548)
+.|+.. ..+..|.+||+.+++...
T Consensus 302 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 334 (388)
T 3pe7_A 302 SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR 334 (388)
T ss_dssp CCC------------CCCCEEEEEETTTTEEEE
T ss_pred CcceeEeeeccccccCCCCEEEEEeccCCceEE
Confidence 444432 456789999999887643
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=1e-15 Score=166.20 Aligned_cols=261 Identities=13% Similarity=0.034 Sum_probs=168.6
Q ss_pred CcccccccCCCCCCceeEEeCCCCCEEEEe--cCC-eEEEEEccCCCCCCeEEEecCCCCce---------EEEec--CC
Q 008939 119 SRIGSLGASSSSTSMTNTNFDGKGTYIIFN--VGD-AIFISDLNSQDKDPIKSIHFSNSNPV---------CHAFD--QD 184 (548)
Q Consensus 119 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~~~--~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~---------~~~~~--p~ 184 (548)
++++.-...+|...+..++|++++.+++.. ..+ ...||....+ .....+..++..+. ...|+ |+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD 89 (662)
T 3azo_A 12 SPIDAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--GAEESALPAPWNVRNRVFEYSGFPWAGVPRPA 89 (662)
T ss_dssp CSCCHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--SCEEESSCTTCCBCCCGGGTCCCCEEEECCSS
T ss_pred CCCCHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--CCcceeCCCCccccccccccCCccceeeeecC
Confidence 444443445677788899999876555554 334 7889986432 35566665655555 55565 87
Q ss_pred CCCCce-EEEEEc-CCcEEEEEee----ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC------
Q 008939 185 AKDGHD-LLIGLN-SGDVYSVSLR----QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD------ 252 (548)
Q Consensus 185 ~~~~~~-l~~g~~-dg~I~iwdl~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d------ 252 (548)
+.. |+.... +..|+++++. .. .+.+.. .....+...+.+++|+||++ .|+.++.|
T Consensus 90 ---g~~~la~~~~~~~~l~~~~~~~~g~~~----~~~l~~-----~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~ 156 (662)
T 3azo_A 90 ---GGPLLVFTHFGDQRLYAFEPDAPGGAV----PRPLTP-----VSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGP 156 (662)
T ss_dssp ---SSCEEEEEBTTTCCEEEECTTSTTCCC----CEECSC-----CCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSST
T ss_pred ---CCeEEEEEECCCCeEEEEcCCCCCCCC----CEeccC-----CccCCCCccccCcEECCCCC-EEEEEEecccCCCC
Confidence 667 665543 4566666654 10 111110 00001456788999999999 77777766
Q ss_pred ----CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee-ecCCCeEEEEECCCCCEEEEEECCC------
Q 008939 253 ----GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGRDG------ 321 (548)
Q Consensus 253 ----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg------ 321 (548)
..|++||+........ .....+. .+...+..++|+|||++|+.++.++
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~ 215 (662)
T 3azo_A 157 SDVRRFLAAVPLDGSAAADR---------------------SAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWE 215 (662)
T ss_dssp TCEEEEEEEEETTSTTTTCG---------------------GGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTT
T ss_pred CCceeEEEEEECCCCccccC---------------------CceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCC
Confidence 5899999875100000 0011111 2235677889999999999887553
Q ss_pred --eEEEEeCC-CC---eEEEeeeecCCceEEEEEccCCCEEEEEeCCC--eEEEEECCCceeEEeccCCCCC--------
Q 008939 322 --YLRVFDYS-KE---QLICGGKSYYGALLCCAWSMDGKYILTGGEDD--LVQVWSMEDRKVVAWGEGHNSW-------- 385 (548)
Q Consensus 322 --~v~vwd~~-~~---~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg--~I~vwd~~~~~~~~~~~~h~~~-------- 385 (548)
.|++||+. ++ +.......+...+..++|+|||++++++..++ .|.+||+.+++.......+...
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~ 295 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPG 295 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTT
T ss_pred CcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcccccc
Confidence 79999998 57 44444455577899999999999888888888 6777777677665544433332
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE--ECCCCe
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW--DLEMDE 429 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lw--d~~~~~ 429 (548)
+..++|+| ++ .+++++.. +.++|| |+..++
T Consensus 296 ~~~~~~~~-------~~------~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 296 MRWFAPLA-------NG------LIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp CCSEEECT-------TS------CEEEEEBS-SSCEEEEEETTTTE
T ss_pred CceEeEeC-------CC------EEEEEEEc-CccEEEEEECCCCc
Confidence 56788888 87 68888888 999999 555544
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.73 E-value=5.4e-16 Score=156.53 Aligned_cols=216 Identities=14% Similarity=0.041 Sum_probs=142.9
Q ss_pred EccCCCCCCeEEEecCCCCceE-----EEecCCCCCCceEEEEEc-CCc--EEEEEeeecccccccceeeeeeeccCCcc
Q 008939 157 DLNSQDKDPIKSIHFSNSNPVC-----HAFDQDAKDGHDLLIGLN-SGD--VYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 157 d~~~~~~~~i~~~~~~~~~~~~-----~~~~p~~~~~~~l~~g~~-dg~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
|..++. .+..+..++..... .+|+|+ +..|+..+. +|. |++||+... ....... .
T Consensus 16 ~~~~g~--~~~~lt~~~~~~~~~~~~~~~~SpD---g~~l~~~~~~~g~~~l~~~d~~~g------~~~~lt~------~ 78 (388)
T 3pe7_A 16 DASTGA--QVTRLTPPDVTCHRNYFYQKCFTRD---GSKLLFGGAFDGPWNYYLLDLNTQ------VATQLTE------G 78 (388)
T ss_dssp CTTTCC--EEEECSCTTSCEECCCTTSCCBCTT---SCEEEEEECTTSSCEEEEEETTTC------EEEECCC------S
T ss_pred cCCCCc--ceEEecCCcccccchhhcCccCCCC---CCEEEEEEcCCCCceEEEEeCCCC------ceEEeee------C
Confidence 444433 56666655544444 789999 778888887 674 778887651 1111111 1
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE--E
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI--A 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~ 306 (548)
+...+..+.|+|+++ .|+.+..++.|++||+.... ....+..+...+... .
T Consensus 79 ~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~g~--------------------------~~~~~~~~~~~~~~~~~~ 131 (388)
T 3pe7_A 79 RGDNTFGGFLSPDDD-ALFYVKDGRNLMRVDLATLE--------------------------ENVVYQVPAEWVGYGTWV 131 (388)
T ss_dssp SCBCSSSCEECTTSS-EEEEEETTTEEEEEETTTCC--------------------------EEEEEECCTTEEEEEEEE
T ss_pred CCCCccceEEcCCCC-EEEEEeCCCeEEEEECCCCc--------------------------ceeeeechhhccccccee
Confidence 334445678999999 88888888999999998621 122233333444333 3
Q ss_pred ECCCCCEEEEEE----------------------CCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc-CCCEEEEEeCC-
Q 008939 307 FSTDGTYLATVG----------------------RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGED- 362 (548)
Q Consensus 307 ~sp~g~~l~s~~----------------------~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~d- 362 (548)
++|++++++... .+..|.+||+.+++... +..+...+..++|+| ||+.|+....+
T Consensus 132 ~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~ 210 (388)
T 3pe7_A 132 ANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGP 210 (388)
T ss_dssp ECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSC
T ss_pred ECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecC
Confidence 489999887532 34679999999887554 344667789999999 99988877753
Q ss_pred -----CeEEEEECCCceeEEeccCCC--CCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-C----CeEEEEECCCCeE
Q 008939 363 -----DLVQVWSMEDRKVVAWGEGHN--SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ-D----TRLLLWDLEMDEI 430 (548)
Q Consensus 363 -----g~I~vwd~~~~~~~~~~~~h~--~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~-D----g~i~lwd~~~~~~ 430 (548)
..|.++|+..++.. .+..+. ..+..+.|+| || +.|+..+. + ..|.+||+.+++.
T Consensus 211 ~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~sp-------dg------~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 211 HDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVP-------DG------SALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp TTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECT-------TS------SCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred CCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECC-------CC------CEEEEEecCCCCCcceEEEEecCCCce
Confidence 37888888765543 333343 3578899999 99 44544332 2 2399999998875
Q ss_pred E
Q 008939 431 V 431 (548)
Q Consensus 431 ~ 431 (548)
.
T Consensus 277 ~ 277 (388)
T 3pe7_A 277 R 277 (388)
T ss_dssp E
T ss_pred E
Confidence 4
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.72 E-value=2.2e-15 Score=148.79 Aligned_cols=257 Identities=14% Similarity=0.163 Sum_probs=177.2
Q ss_pred CCCceeEEeCCCCCEEEEecCC-------------------------eEEEEEccCCCCCCeEEEe-cCCCCceEEEecC
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-------------------------AIFISDLNSQDKDPIKSIH-FSNSNPVCHAFDQ 183 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-------------------------~v~vwd~~~~~~~~i~~~~-~~~~~~~~~~~~p 183 (548)
-+.+..++++++|+++++...+ .|++||..++. .+.... ..-..+..++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE--ILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC--EEEEECTTTCSSEEEEEECT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe--EEeccCCCccCCceEEEECC
Confidence 3567889999999999887766 59999988654 443332 1234789999999
Q ss_pred CCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeecc--CCcccCcceEEEEEec-CCCcEEEEEe-CCCcEEEEE
Q 008939 184 DAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNK--DGSVNNSRCTSVTWVP-GGDGAFVVGH-ADGNLYVYE 259 (548)
Q Consensus 184 ~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~~p-~~~~~l~s~~-~dg~v~vwd 259 (548)
+ +.++++...++.|++||..... ..+........ ....+......|+++| ++. ++++.+ .++.|++||
T Consensus 101 ~---g~l~v~d~~~~~v~~~~~~g~~----~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~~ 172 (329)
T 3fvz_A 101 D---GNYWVTDVALHQVFKLDPHSKE----GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQFS 172 (329)
T ss_dssp T---SCEEEEETTTTEEEEECTTCSS----CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEEC
T ss_pred C---CCEEEEECCCCEEEEEeCCCCe----EEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEEc
Confidence 8 7777777778999999976410 01111100000 0012345789999999 666 777775 689999999
Q ss_pred cCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeee
Q 008939 260 KSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGK 338 (548)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~ 338 (548)
.+ +.....+....... ... ..+-.....++++|+ +.++++...++.|++||..+++.+..+.
T Consensus 173 ~~--g~~~~~~~~~g~~~----------~~~-----~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 173 PS--GKFVTQWGEESSGS----------SPR-----PGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK 235 (329)
T ss_dssp TT--SCEEEEECEECCSS----------SCC-----TTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred CC--CCEEEEeccCCCCC----------CCC-----CcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 43 22111111000000 000 001134789999998 7777777788999999999898887764
Q ss_pred --ecCCceEEEEEccCCCEEEE-------EeCCCeEEEEECCCceeEEec---cCCCCCeEEEEEecCCCCCCCCCCccc
Q 008939 339 --SYYGALLCCAWSMDGKYILT-------GGEDDLVQVWSMEDRKVVAWG---EGHNSWVSGVAFDSYWSQPNSDGTAET 406 (548)
Q Consensus 339 --~~~~~v~~l~~spdg~~l~s-------gs~dg~I~vwd~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~~~dg~~~~ 406 (548)
.+...+..++++| +..+++ ...+..|++||+.+++.+..+ .++...+..|+++| ||
T Consensus 236 ~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-------dG---- 303 (329)
T 3fvz_A 236 HASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-------DG---- 303 (329)
T ss_dssp CTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-------TS----
T ss_pred ccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-------CC----
Confidence 3556788999999 433333 334558999999999988887 36778899999999 99
Q ss_pred eeEEEEEEeCCCeEEEEECCC
Q 008939 407 VMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 407 ~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
.++++...++.|++|++..
T Consensus 304 --~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 304 --TVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp --EEEEEESSSCCEEEEEEEE
T ss_pred --CEEEEECCCCEEEEEeCCc
Confidence 7899999999999999864
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.71 E-value=9.2e-16 Score=168.65 Aligned_cols=201 Identities=10% Similarity=0.016 Sum_probs=137.2
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC--
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-- 252 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d-- 252 (548)
....++|+|+ +.+|+++ +|.|++||+.+. +.. .... ............++.|+||++ .|+.++.+
T Consensus 18 ~~~~~~w~~d---g~~~~~~--~~~i~~~~~~~~-----~~~-~~~~-~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~ 84 (740)
T 4a5s_A 18 KLYSLRWISD---HEYLYKQ--ENNILVFNAEYG-----NSS-VFLE-NSTFDEFGHSINDYSISPDGQ-FILLEYNYVK 84 (740)
T ss_dssp CCCCEEECSS---SEEEEEE--TTEEEEEETTTC-----CEE-EEEC-TTTTTTCCSCCCEEEECTTSS-EEEEEEEEEE
T ss_pred cccccEECCC---CcEEEEc--CCcEEEEECCCC-----ceE-EEEe-chhhhhhcccccceEECCCCC-EEEEEECCee
Confidence 4568899998 6677775 999999998762 111 1111 001111222345689999999 77777765
Q ss_pred -------CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEE
Q 008939 253 -------GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 325 (548)
Q Consensus 253 -------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~v 325 (548)
+.+++||+.++. +..+..|.+.+...+|||||+.||.+. |+.|++
T Consensus 85 ~~r~~~~~~~~~~d~~~~~---------------------------~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~ 136 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKRQ---------------------------LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYV 136 (740)
T ss_dssp CSSSCEEEEEEEEETTTTE---------------------------ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEE
T ss_pred eEEEccceEEEEEECCCCc---------------------------EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEE
Confidence 667899998631 111223446789999999999999885 789999
Q ss_pred EeCCCCeEEEe-eeecCCce-----------------EEEEEccCCCEEEEEeCCC------------------------
Q 008939 326 FDYSKEQLICG-GKSYYGAL-----------------LCCAWSMDGKYILTGGEDD------------------------ 363 (548)
Q Consensus 326 wd~~~~~~~~~-~~~~~~~v-----------------~~l~~spdg~~l~sgs~dg------------------------ 363 (548)
||+.+++.... ..++...+ ..+.|||||++||..+.|.
T Consensus 137 ~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred EECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 99988765432 22222222 3589999999999875321
Q ss_pred ------------eEEEEECCC---c---eeEEecc-----CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe----C
Q 008939 364 ------------LVQVWSMED---R---KVVAWGE-----GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG----Q 416 (548)
Q Consensus 364 ------------~I~vwd~~~---~---~~~~~~~-----~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~----~ 416 (548)
.|++||+.+ + +...... +|...+..++|+| || ++++... .
T Consensus 217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-------dg------~~~~~~~~r~~~ 283 (740)
T 4a5s_A 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-------QE------RISLQWLRRIQN 283 (740)
T ss_dssp ECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-------TT------EEEEEEEESSTT
T ss_pred cCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-------CC------eEEEEEeCCCCC
Confidence 588899998 7 3332222 3888899999999 99 5555443 2
Q ss_pred CCeEEEEECCCCe
Q 008939 417 DTRLLLWDLEMDE 429 (548)
Q Consensus 417 Dg~i~lwd~~~~~ 429 (548)
+..|.+||+.+++
T Consensus 284 ~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 284 YSVMDICDYDESS 296 (740)
T ss_dssp EEEEEEEEEETTT
T ss_pred EEEEEEEECCCCc
Confidence 3479999999886
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=1.1e-14 Score=140.62 Aligned_cols=238 Identities=12% Similarity=0.100 Sum_probs=167.1
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEec------CCCCceEEEec-CCCCCCceEEEEEc-CCc
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHF------SNSNPVCHAFD-QDAKDGHDLLIGLN-SGD 199 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~------~~~~~~~~~~~-p~~~~~~~l~~g~~-dg~ 199 (548)
+-..+..++++++|.++++...+ .|++||.+. +.+..+.. +...+..++++ ++ +.++++... ++.
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~~~p~~i~~~~~~---g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG---RFKFQFGECGKRDSQLLYPNRVAVVRNS---GDIIVTERSPTHQ 101 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS---CEEEEECCBSSSTTCBSSEEEEEEETTT---TEEEEEECGGGCE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCC---cEEEEecccCCCcccccCceEEEEEcCC---CeEEEEcCCCCCE
Confidence 44567889999999988886655 999999873 24444432 12468899995 44 444444433 889
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
|++||... +.+. ... ..+...+.++++.|++. ++++...++.|++||... ..
T Consensus 102 i~~~d~~g------~~~~-~~~-----~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g--~~------------- 153 (286)
T 1q7f_A 102 IQIYNQYG------QFVR-KFG-----ATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNG--NV------------- 153 (286)
T ss_dssp EEEECTTS------CEEE-EEC-----TTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTS--CE-------------
T ss_pred EEEECCCC------cEEE-Eec-----CccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCC--CE-------------
Confidence 99998432 2111 110 01345689999999998 777777889999998642 11
Q ss_pred eeecCCCCCCCCeeEee--ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeec--CCceEEEEEccCCCE
Q 008939 280 SVAHPRYSKSNPIARWH--ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY--YGALLCCAWSMDGKY 355 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--~~~v~~l~~spdg~~ 355 (548)
+..+. .+...+.+++++++++++++...++.|++||.. ++.+..+..+ ...+..++++++|++
T Consensus 154 ------------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l 220 (286)
T 1q7f_A 154 ------------LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEI 220 (286)
T ss_dssp ------------EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCE
T ss_pred ------------EEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCE
Confidence 11111 122468899999999977777778999999985 5555555433 357889999999998
Q ss_pred EEEEeCCC-eEEEEECCCceeEEeccCCC--CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 356 ILTGGEDD-LVQVWSMEDRKVVAWGEGHN--SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 356 l~sgs~dg-~I~vwd~~~~~~~~~~~~h~--~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+++...++ .|.+||.. ++.+..+..+. ..+.+++++| +| +++++ +.|+.|++|++...
T Consensus 221 ~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~-------~g------~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 221 LIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMD-------DG------SVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEET-------TT------EEEEE-ETTTEEEEEECSCC
T ss_pred EEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECC-------CC------cEEEE-CCCCeEEEEEcccc
Confidence 88887776 99999964 56666555443 3478999999 99 66666 67999999998653
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.69 E-value=5.5e-14 Score=135.58 Aligned_cols=242 Identities=11% Similarity=0.134 Sum_probs=166.0
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEe-cCCCcEEEEEeC-
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWV-PGGDGAFVVGHA- 251 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-p~~~~~l~s~~~- 251 (548)
..+.+++++++ +.++++...++.|.+||... +.+.. .........+...+.++++. +++. ++++...
T Consensus 30 ~~p~~v~~~~~---g~l~v~~~~~~~i~~~d~~g------~~~~~-~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~ 98 (286)
T 1q7f_A 30 TEPSGVAVNAQ---NDIIVADTNNHRIQIFDKEG------RFKFQ-FGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSP 98 (286)
T ss_dssp SCEEEEEECTT---CCEEEEEGGGTEEEEECTTS------CEEEE-ECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGG
T ss_pred CCCceEEECCC---CCEEEEECCCCEEEEECCCC------cEEEE-ecccCCCcccccCceEEEEEcCCCe-EEEEcCCC
Confidence 46889999988 66777777889999998653 11111 11001111244578999995 5554 5555533
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee-ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
++.|++||.. +.. +..+. .+...+.+++++++++++++...++.|.+||..
T Consensus 99 ~~~i~~~d~~--g~~-------------------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 150 (286)
T 1q7f_A 99 THQIQIYNQY--GQF-------------------------VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN- 150 (286)
T ss_dssp GCEEEEECTT--SCE-------------------------EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCEEEEECCC--CcE-------------------------EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-
Confidence 7899999943 211 11111 122468899999999988777778999999965
Q ss_pred CeEEEeee--ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC--CCCeEEEEEecCCCCCCCCCCccc
Q 008939 331 EQLICGGK--SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH--NSWVSGVAFDSYWSQPNSDGTAET 406 (548)
Q Consensus 331 ~~~~~~~~--~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h--~~~V~~v~~~p~~~~~~~dg~~~~ 406 (548)
++.+..+. .+...+..++++++|+++++...++.|++||.. ++.+..+..+ ...+..|+++| +|
T Consensus 151 g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~-------~G---- 218 (286)
T 1q7f_A 151 GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-------NG---- 218 (286)
T ss_dssp SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-------TC----
T ss_pred CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC-------CC----
Confidence 55555543 344568999999999988888889999999985 5555555433 46789999999 88
Q ss_pred eeEEEEEEeCCC-eEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCC
Q 008939 407 VMYRFGSVGQDT-RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHT 485 (548)
Q Consensus 407 ~~~~l~s~~~Dg-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~ 485 (548)
+++++...++ .|.+||. .++.+..+.. ....
T Consensus 219 --~l~v~~~~~~~~i~~~~~-~g~~~~~~~~---------------------------------------------~~~~ 250 (286)
T 1q7f_A 219 --EILIADNHNNFNLTIFTQ-DGQLISALES---------------------------------------------KVKH 250 (286)
T ss_dssp --CEEEEECSSSCEEEEECT-TSCEEEEEEE---------------------------------------------SSCC
T ss_pred --CEEEEeCCCCEEEEEECC-CCCEEEEEcc---------------------------------------------cCCC
Confidence 6777777776 9999995 4554443322 0112
Q ss_pred CCeeEEEEeCCe-EEEEECCCeEEEEeCCC
Q 008939 486 EPLSGLIFTQES-VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 486 ~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~ 514 (548)
..+.+++|+|++ |+.++.|+.|++|++..
T Consensus 251 ~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 251 AQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp SCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred CcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 346789999984 55457899999999754
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.67 E-value=1.6e-14 Score=144.56 Aligned_cols=260 Identities=14% Similarity=0.105 Sum_probs=176.9
Q ss_pred eEEeCCCCCEEEEec-----------CCeEEEEEccCCCCCCeEEEecC------CCCceEEEecCCCCCCceEEEEEc-
Q 008939 135 NTNFDGKGTYIIFNV-----------GDAIFISDLNSQDKDPIKSIHFS------NSNPVCHAFDQDAKDGHDLLIGLN- 196 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~-----------~d~v~vwd~~~~~~~~i~~~~~~------~~~~~~~~~~p~~~~~~~l~~g~~- 196 (548)
.++|+|||+++.++. .+.|.+||+.+. +.+..+... ...+..++|+|+ +++|+++..
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--~~~~~i~~~~~~~~~g~~p~~i~~spd---g~~l~v~n~~ 128 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL--TFEKEISLPPKRVQGLNYDGLFRQTTD---GKFIVLQNAS 128 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC--CEEEEEEECTTBCCBCCCGGGEEECTT---SSEEEEEEES
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC--cEEEEEEcCccccccCCCcceEEECCC---CCEEEEECCC
Confidence 799999999998864 237999999874 477777653 356889999999 888988875
Q ss_pred -CCcEEEEEeeecccccccceeee-eeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccc
Q 008939 197 -SGDVYSVSLRQQLQDVGKKLVGA-HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 197 -dg~I~iwdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 274 (548)
++.|.+||+.+. ++... .. ......+.+.|++...+++.+.||.+.+|++...+.......
T Consensus 129 ~~~~v~v~d~~~~------~~~~~~i~--------~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~--- 191 (361)
T 2oiz_A 129 PATSIGIVDVAKG------DYVEDVTA--------AAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR--- 191 (361)
T ss_dssp SSEEEEEEETTTT------EEEEEEGG--------GTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE---
T ss_pred CCCeEEEEECCCC------cEEEEEec--------CCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc---
Confidence 578999999862 22221 11 122334667888755888899999999999865332110000
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE--EEeeee------cC----C
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL--ICGGKS------YY----G 342 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~--~~~~~~------~~----~ 342 (548)
. ...+..+..++ .+.+++++..++..+.++.|.++|+..... +..+.. +. .
T Consensus 192 ~----------------~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 254 (361)
T 2oiz_A 192 S----------------KQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG 254 (361)
T ss_dssp C----------------CCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred c----------------cceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccC
Confidence 0 00111111221 233456777777788899999999975532 222110 00 1
Q ss_pred ceEEEEEccCCCEEEEEeC-----------CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE
Q 008939 343 ALLCCAWSMDGKYILTGGE-----------DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 343 ~v~~l~~spdg~~l~sgs~-----------dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
...-++++|+++.++++.. .+.|.+||+++++.+.++..+. +.+|+|+| || ++|
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-------dg------~~l 319 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-------QR------NLM 319 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-------TT------TEE
T ss_pred CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-------CC------CEE
Confidence 1223789999888777643 3589999999999999998776 99999999 99 577
Q ss_pred EEEeCCCeEEEEECCCC--eEEeee-ecCCCCCCceecCCC
Q 008939 412 GSVGQDTRLLLWDLEMD--EIVVPL-RRGPLGGSPTFSTGS 449 (548)
Q Consensus 412 ~s~~~Dg~i~lwd~~~~--~~~~~~-~~~~~~~~~~~~~~~ 449 (548)
++++. +.|.+||+.++ +.+..+ ........+.+++++
T Consensus 320 ~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 320 LTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp EEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred EEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence 77766 99999999999 888876 333334455666654
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.67 E-value=4e-15 Score=150.26 Aligned_cols=234 Identities=15% Similarity=0.023 Sum_probs=137.9
Q ss_pred EEccCCCCCCeEEEecCCCC-----ceEEEecCCCCCCceEEEEEcC-C--cEEEEEeeecccccccceeeeeeeccCCc
Q 008939 156 SDLNSQDKDPIKSIHFSNSN-----PVCHAFDQDAKDGHDLLIGLNS-G--DVYSVSLRQQLQDVGKKLVGAHHYNKDGS 227 (548)
Q Consensus 156 wd~~~~~~~~i~~~~~~~~~-----~~~~~~~p~~~~~~~l~~g~~d-g--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~ 227 (548)
.|..++. .+..+..+... +..++|+|+ +..|+..... + .|++||+... + ......
T Consensus 15 ~d~~~g~--~~~~l~~~~~~~~~~~~~~~~~Spd---G~~l~~~~~~~g~~~l~~~d~~~~-----~-~~~l~~------ 77 (396)
T 3c5m_A 15 VDSDTQV--KVTRLTPTDIICHRNYFYQKCFTQD---GKKLLFAGDFDGNRNYYLLNLETQ-----Q-AVQLTE------ 77 (396)
T ss_dssp ECTTTCC--EEEECSCTTSCEECCCTTSCCBCTT---SCEEEEEECTTSSCEEEEEETTTT-----E-EEECCC------
T ss_pred ecCCCCc--ceEEEecCCCCccceeeecCcCCCC---CCEEEEEEecCCCceEEEEECCCC-----c-EEEeec------
Confidence 3555533 45555443333 677899999 7777776553 3 6888887651 1 111110
Q ss_pred ccCcc-eEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc--cceeeeecCCCCCCCCeeEeeecCCCeEE
Q 008939 228 VNNSR-CTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD--QTQFSVAHPRYSKSNPIARWHICQGSINS 304 (548)
Q Consensus 228 ~~~~~-v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (548)
+... ...+.|+|+++ .|+....++.|++||+.... .......... .....+.... .......+ ...
T Consensus 78 -~~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~g~~l~~~~--~~~~~~~~------~~~ 146 (396)
T 3c5m_A 78 -GKGDNTFGGFISTDER-AFFYVKNELNLMKVDLETLE-EQVIYTVDEEWKGYGTWVANSD--CTKLVGIE------ILK 146 (396)
T ss_dssp -SSCBCTTTCEECTTSS-EEEEEETTTEEEEEETTTCC-EEEEEECCTTEEEEEEEEECTT--SSEEEEEE------EEG
T ss_pred -CCCCccccceECCCCC-EEEEEEcCCcEEEEECCCCC-cEEEEecccccCCCCCEEEecc--CCcccccc------ccc
Confidence 1222 23478999999 88888888899999987521 1111100000 0000000000 00000000 011
Q ss_pred EEECCCCCEEEEE-----ECCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc-CCCEEEEEeCC------CeEEEEECCC
Q 008939 305 IAFSTDGTYLATV-----GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGED------DLVQVWSMED 372 (548)
Q Consensus 305 ~~~sp~g~~l~s~-----~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~d------g~I~vwd~~~ 372 (548)
+.|+|+++.++.. ..+..|.+||+.+++..... .+...+..+.|+| +++.|+..+.+ ..|.+||+..
T Consensus 147 ~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~ 225 (396)
T 3c5m_A 147 RDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG 225 (396)
T ss_dssp GGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS
T ss_pred cccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC
Confidence 4578888877654 35678999999988765444 4667789999999 88877766543 3688899876
Q ss_pred ceeEEeccCC-CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCCeEE
Q 008939 373 RKVVAWGEGH-NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDEIV 431 (548)
Q Consensus 373 ~~~~~~~~~h-~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~~~~ 431 (548)
++........ ...+..+.|+| || .+|+..+.+ +.|.+||+.+++..
T Consensus 226 ~~~~~l~~~~~~~~~~~~~~sp-------dg------~~l~~~~~~~~~~~~~l~~~d~~~g~~~ 277 (396)
T 3c5m_A 226 SNVRKIKEHAEGESCTHEFWIP-------DG------SAMAYVSYFKGQTDRVIYKANPETLENE 277 (396)
T ss_dssp CCCEESSCCCTTEEEEEEEECT-------TS------SCEEEEEEETTTCCEEEEEECTTTCCEE
T ss_pred CceeEeeccCCCccccceEECC-------CC------CEEEEEecCCCCccceEEEEECCCCCeE
Confidence 6544333321 23578899999 98 556655443 45999999887653
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.66 E-value=4.2e-15 Score=150.13 Aligned_cols=237 Identities=10% Similarity=0.057 Sum_probs=149.5
Q ss_pred ceeEEeCCCCCEEEEecCC----eEEEEEccCCCCCCeEEEecCCCC-ceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 133 MTNTNFDGKGTYIIFNVGD----AIFISDLNSQDKDPIKSIHFSNSN-PVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d----~v~vwd~~~~~~~~i~~~~~~~~~-~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
+..++|+|||++|++...+ .|++||+.++. ...+...... ..+..|+|+ +..|+....++.|++||+..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~spd---g~~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ---AVQLTEGKGDNTFGGFISTD---ERAFFYVKNELNLMKVDLET 111 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE---EEECCCSSCBCTTTCEECTT---SSEEEEEETTTEEEEEETTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc---EEEeecCCCCccccceECCC---CCEEEEEEcCCcEEEEECCC
Confidence 5578999999998886432 78999988643 3333333333 334789999 88899999999999999875
Q ss_pred cccccccceeeeeeeccCCcccCcceEE-------------------EEEecCCCcEEEEE-----eCCCcEEEEEcCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTS-------------------VTWVPGGDGAFVVG-----HADGNLYVYEKSKD 263 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------l~~~p~~~~~l~s~-----~~dg~v~vwd~~~~ 263 (548)
.. .+.+.. . +...... +.|+|+++ .++.. ..+..|++||+...
T Consensus 112 ~~---~~~~~~---~------~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 112 LE---EQVIYT---V------DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp CC---EEEEEE---C------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTTC
T ss_pred CC---cEEEEe---c------ccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcceEEEEECCCC
Confidence 21 011110 0 0111111 34667766 33332 35567888887652
Q ss_pred CCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECC------CeEEEEeCCCCeEEEe
Q 008939 264 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRD------GYLRVFDYSKEQLICG 336 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~d------g~v~vwd~~~~~~~~~ 336 (548)
. ...+..+...+..+.|+| +++.|+..+.+ ..|.+||+..++....
T Consensus 179 ~---------------------------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (396)
T 3c5m_A 179 E---------------------------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI 231 (396)
T ss_dssp C---------------------------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEES
T ss_pred c---------------------------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEe
Confidence 1 122223456788999999 88878777654 3688899876654333
Q ss_pred eeec-CCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 337 GKSY-YGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 337 ~~~~-~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
.... ...+..++|+|||++|+..+.+ +.|++||+.+++...... ... .. +.|+|. || .+
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~------dg------~~ 296 (396)
T 3c5m_A 232 KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNF------DG------SL 296 (396)
T ss_dssp SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECS------SS------SE
T ss_pred eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCC------CC------ce
Confidence 2311 2357889999999987776543 449999998876543322 111 23 778751 56 45
Q ss_pred EEEEe----------------CCCeEEEEECCCCeE
Q 008939 411 FGSVG----------------QDTRLLLWDLEMDEI 430 (548)
Q Consensus 411 l~s~~----------------~Dg~i~lwd~~~~~~ 430 (548)
++.++ .+..|.+||+.+++.
T Consensus 297 l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 297 MVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp EEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred EEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 65543 347899999987764
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.65 E-value=4.2e-14 Score=139.63 Aligned_cols=245 Identities=9% Similarity=0.000 Sum_probs=173.2
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCC------------------------cEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADG------------------------NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg------------------------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
.-..+.+|+++|+++ ++++...+. .|++||..+..
T Consensus 22 ~l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~-------------------- 80 (329)
T 3fvz_A 22 LPGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE-------------------- 80 (329)
T ss_dssp CCSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC--------------------
T ss_pred ecCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe--------------------
Confidence 356799999999998 777777663 57777765411
Q ss_pred CCCCCCCeeEee-ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe-EEEee---------eecCCceEEEEEcc-C
Q 008939 285 RYSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ-LICGG---------KSYYGALLCCAWSM-D 352 (548)
Q Consensus 285 ~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~-~~~~~---------~~~~~~v~~l~~sp-d 352 (548)
.+..+. .+-..+..++++++|+++++...++.|++||..... .+..+ ..+......++++| +
T Consensus 81 ------~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~ 154 (329)
T 3fvz_A 81 ------ILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPST 154 (329)
T ss_dssp ------EEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTT
T ss_pred ------EEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCC
Confidence 111111 122468899999999988888888999999986442 34443 23445688999999 8
Q ss_pred CCEEEEEe-CCCeEEEEECCCceeEEeccC----------CCCCeEEEEEecCCCCCCCC-CCccceeEEEEEEeCCCeE
Q 008939 353 GKYILTGG-EDDLVQVWSMEDRKVVAWGEG----------HNSWVSGVAFDSYWSQPNSD-GTAETVMYRFGSVGQDTRL 420 (548)
Q Consensus 353 g~~l~sgs-~dg~I~vwd~~~~~~~~~~~~----------h~~~V~~v~~~p~~~~~~~d-g~~~~~~~~l~s~~~Dg~i 420 (548)
++++++.+ .++.|++|| .+++.+..+.. +-.....|+++| + | .++++...++.|
T Consensus 155 g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~-------~~g------~l~v~d~~~~~I 220 (329)
T 3fvz_A 155 GAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP-------HLD------QLCVADRENGRI 220 (329)
T ss_dssp CCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEET-------TTT------EEEEEETTTTEE
T ss_pred CeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC-------CCC------EEEEEECCCCEE
Confidence 88888886 699999999 55666666542 224588999999 8 6 788888889999
Q ss_pred EEEECCCCeEEeeeecCC---CCCCceecCCCCccccCCee-eecccCCCCceeecCCCCceEEee---cCCCCeeEEEE
Q 008939 421 LLWDLEMDEIVVPLRRGP---LGGSPTFSTGSQSAHWDNVC-PVGTLQPAPSMRDVPKLSPLVAHR---VHTEPLSGLIF 493 (548)
Q Consensus 421 ~lwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~-~~g~~~~~~~~~d~~~~~~~~~~~---~h~~~V~~l~f 493 (548)
++||..+++.+..+.... ....+.+.+ +.....+..+ ........+.+|+....+.+..+. .+...+.+|++
T Consensus 221 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~ 299 (329)
T 3fvz_A 221 QCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVA 299 (329)
T ss_dssp EEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEE
T ss_pred EEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEE
Confidence 999999899888775432 222344555 2111111111 122234577888988888887773 67778999999
Q ss_pred eCCe--EEEEECCCeEEEEeCCCC
Q 008939 494 TQES--VLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 494 spd~--l~t~s~Dg~I~iW~~~~~ 515 (548)
+|++ +++...++.|++|++.+.
T Consensus 300 ~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 300 SEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCCCCEEEEECCCCEEEEEeCCcc
Confidence 9985 677788999999998654
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=1.7e-14 Score=156.58 Aligned_cols=214 Identities=14% Similarity=0.064 Sum_probs=137.6
Q ss_pred ecCCCCceEEEecCCCCCCceEEEE--EcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceE---------EEEE
Q 008939 170 HFSNSNPVCHAFDQDAKDGHDLLIG--LNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCT---------SVTW 238 (548)
Q Consensus 170 ~~~~~~~~~~~~~p~~~~~~~l~~g--~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~l~~ 238 (548)
..+...+..++|+++ ...++.. ..++...||.... +....... .+...+. ...|
T Consensus 20 ~~~~~~~~~~~~s~~---~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~ 84 (662)
T 3azo_A 20 ASRSGRPACVGAVGD---EVWWVAPRPAEAGRATLVRRRA-----DGAEESAL-------PAPWNVRNRVFEYSGFPWAG 84 (662)
T ss_dssp HHTCSCCEEEEEETT---EEEEEEEETTTTTEEEEEEECT-----TSCEEESS-------CTTCCBCCCGGGTCCCCEEE
T ss_pred hhcCCccceeEEcCC---eEEEEecCcccCCcEEEEEECC-----CCCcceeC-------CCCccccccccccCCcccee
Confidence 345667888889876 4445544 3477888998632 11111111 1222333 5566
Q ss_pred e--cCCCcEEEEEe-CCCcEEEEEcCCCC-CCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEE
Q 008939 239 V--PGGDGAFVVGH-ADGNLYVYEKSKDG-AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYL 314 (548)
Q Consensus 239 ~--p~~~~~l~s~~-~dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l 314 (548)
+ ||++.+|+.+. .+..|++|++...+ .....+..... ..|...+..++|+|||+.|
T Consensus 85 ~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~--------------------~~~~~~~~~~~~spDg~~l 144 (662)
T 3azo_A 85 VPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSA--------------------VGGGLRWADPVLLPERGEV 144 (662)
T ss_dssp ECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCC--------------------STTCEEEEEEEEETTTTEE
T ss_pred eeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCcc--------------------CCCCccccCcEECCCCCEE
Confidence 6 99994144443 45666666654101 11111110000 0033567899999999999
Q ss_pred EEEECC----------CeEEEEeCCC------CeEEEeee-ecCCceEEEEEccCCCEEEEEeCC--------CeEEEEE
Q 008939 315 ATVGRD----------GYLRVFDYSK------EQLICGGK-SYYGALLCCAWSMDGKYILTGGED--------DLVQVWS 369 (548)
Q Consensus 315 ~s~~~d----------g~v~vwd~~~------~~~~~~~~-~~~~~v~~l~~spdg~~l~sgs~d--------g~I~vwd 369 (548)
++++.| ..|++||+.+ ++.. .+. .+...+..++|+|||++|+..+.+ ..|.+||
T Consensus 145 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d 223 (662)
T 3azo_A 145 WCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTAR 223 (662)
T ss_dssp EEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEE
T ss_pred EEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEE
Confidence 998877 5899999987 5544 333 455678889999999999987754 3799999
Q ss_pred CC-Cc---eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC--eEEEEECCCCeEEe
Q 008939 370 ME-DR---KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT--RLLLWDLEMDEIVV 432 (548)
Q Consensus 370 ~~-~~---~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg--~i~lwd~~~~~~~~ 432 (548)
++ ++ +......+|...+..+.|+| || ++++++..|+ .|.+||+.+++...
T Consensus 224 ~~~~g~~~~~~~l~~~~~~~~~~~~~sp-------dg------~l~~~~~~~~~~~l~~~~~~~~~~~~ 279 (662)
T 3azo_A 224 VTEDGRFADTRTLLGGPEEAIAQAEWAP-------DG------SLIVATDRTGWWNLHRVDPATGAATQ 279 (662)
T ss_dssp ECTTSCEEEEEEEEEETTBCEEEEEECT-------TS------CEEEEECTTSSCEEEEECTTTCCEEE
T ss_pred ECCCCcccccEEeCCCCCceEcceEECC-------CC------eEEEEECCCCCeEEEEEECCCCceee
Confidence 99 56 44444555678999999999 99 6777777888 67777776766543
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.65 E-value=8e-14 Score=138.26 Aligned_cols=255 Identities=11% Similarity=0.172 Sum_probs=163.6
Q ss_pred ceeEEeCCCCCEEEEec----------CCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC---Cc
Q 008939 133 MTNTNFDGKGTYIIFNV----------GDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---GD 199 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~----------~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---g~ 199 (548)
+....+ ||+.+++.. ...|++||+.++. ...+ ..+..++|+|+ +..|+....+ +.
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~l----~~~~~~~~SpD---g~~la~~~~~~~~~~ 84 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA---RRFI----ENATMPRISPD---GKKIAFMRANEEKKV 84 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC---EEEE----ESCEEEEECTT---SSEEEEEEEETTTTE
T ss_pred cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc---eEEc----ccCCCeEECCC---CCEEEEEEeccCCCc
Confidence 445666 888888742 2278999998754 2333 46888999999 7778877654 33
Q ss_pred --EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC--------------------------
Q 008939 200 --VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA-------------------------- 251 (548)
Q Consensus 200 --I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~-------------------------- 251 (548)
|++||+.. ++ ...... +.. +..++|+|+++ .|+.++.
T Consensus 85 ~~l~~~~~~~-----g~-~~~l~~-------~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (347)
T 2gop_A 85 SEIWVADLET-----LS-SKKILE-------AKN-IRSLEWNEDSR-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG 149 (347)
T ss_dssp EEEEEEETTT-----TE-EEEEEE-------ESE-EEEEEECTTSS-EEEEEEECCCC---------CCCC---------
T ss_pred ceEEEEECCC-----Cc-eEEEEc-------CCC-ccceeECCCCC-EEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence 77777654 11 111111 223 89999999998 5666543
Q ss_pred -CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC-------eE
Q 008939 252 -DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG-------YL 323 (548)
Q Consensus 252 -dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg-------~v 323 (548)
...|++||+... ..+..+.. . .+..++|+||| +++++..+. ..
T Consensus 150 ~~~~l~~~d~~~~--------------------------~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~ 200 (347)
T 2gop_A 150 EKTTFWIFDTESE--------------------------EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFW 200 (347)
T ss_dssp CEEEEEEEETTTT--------------------------EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCE
T ss_pred ccceEEEEECCCC--------------------------eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccc
Confidence 246777877641 11122222 2 67789999999 777776542 33
Q ss_pred EEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC--------CeEEEEECCCceeEEeccCCCCCeEE-EEEecC
Q 008939 324 RVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED--------DLVQVWSMEDRKVVAWGEGHNSWVSG-VAFDSY 394 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d--------g~I~vwd~~~~~~~~~~~~h~~~V~~-v~~~p~ 394 (548)
.||.+.+++.. .+..+ ..+..+ +|||++|+..+.+ ..|.+|| +++.......|...+.. +.|+
T Consensus 201 ~l~~~d~~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-- 272 (347)
T 2gop_A 201 DIYIWEDGKEE-KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-- 272 (347)
T ss_dssp EEEEEETTEEE-EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET--
T ss_pred cEEEeCCCceE-EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc--
Confidence 44444455543 33334 445444 9999988877754 3688888 66665555667778886 7884
Q ss_pred CCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCC
Q 008939 395 WSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPK 474 (548)
Q Consensus 395 ~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~ 474 (548)
|| +++++..++.++|| +.+++....
T Consensus 273 ------dg-------~~~~~~~~~~~~l~-~~~g~~~~~----------------------------------------- 297 (347)
T 2gop_A 273 ------GK-------VYFTLFEEGSVNLY-IWDGEIKPI----------------------------------------- 297 (347)
T ss_dssp ------TE-------EEEEEEETTEEEEE-EESSSEEEE-----------------------------------------
T ss_pred ------Cc-------EEEEEecCCcEEEE-EcCCceEEE-----------------------------------------
Confidence 33 77888899999999 875443211
Q ss_pred CCceEEeecCCCCeeEEEEeCCeEEEEECCCeE-EEEeCC
Q 008939 475 LSPLVAHRVHTEPLSGLIFTQESVLTVCREGHI-KIWMRP 513 (548)
Q Consensus 475 ~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I-~iW~~~ 513 (548)
..+...|.++.|+|..+++++.++.. .||.+.
T Consensus 298 -------~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 298 -------AKGRHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -------ECSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred -------ecCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 12345688899999335667777664 777765
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.63 E-value=1.3e-13 Score=137.97 Aligned_cols=283 Identities=10% Similarity=-0.025 Sum_probs=182.3
Q ss_pred CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc----------CCcEEEEEeeecccccccceeeee
Q 008939 151 DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN----------SGDVYSVSLRQQLQDVGKKLVGAH 220 (548)
Q Consensus 151 d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~----------dg~I~iwdl~~~~~~~~~~~~~~~ 220 (548)
+.|++||..+++ .+..+... ..+ .++|+|+ +++|+++.. ++.|.+||+.+ .+.....
T Consensus 31 ~~v~v~D~~t~~--~~~~i~~g-~~p-~i~~spd---g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t------~~~~~~i 97 (361)
T 2oiz_A 31 SRVHVYDYTNGK--FLGMVPTA-FNG-HVQVSND---GKKIYTMTTYHERITRGKRSDVVEVWDADK------LTFEKEI 97 (361)
T ss_dssp CEEEEEETTTCC--EEEEEECC-EEE-EEEECTT---SSEEEEEEEEETTSSSSCEEEEEEEEETTT------CCEEEEE
T ss_pred CeEEEEECCCCe--EEEEecCC-CCC-ceEECCC---CCEEEEEEecccccccCCCCCEEEEEECcC------CcEEEEE
Confidence 389999988754 66666643 345 8999999 778888863 56799999865 1222222
Q ss_pred eeccCCcccCcceEEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeE-eee
Q 008939 221 HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA--DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIAR-WHI 297 (548)
Q Consensus 221 ~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 297 (548)
........+......++|+|+++ +|+++.. ++.|.+||+.+.. . +.. +.
T Consensus 98 ~~~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~-~-------------------------~~~~i~- 149 (361)
T 2oiz_A 98 SLPPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGD-Y-------------------------VEDVTA- 149 (361)
T ss_dssp EECTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTE-E-------------------------EEEEGG-
T ss_pred EcCccccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCc-E-------------------------EEEEec-
Confidence 21111111234567899999999 7777653 6899999998631 1 111 11
Q ss_pred cCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCC-CeEEEe------eeecCCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 008939 298 CQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSK-EQLICG------GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 369 (548)
Q Consensus 298 h~~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~-~~~~~~------~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd 369 (548)
......+.+.|++ ..+++.+.||.+.+|++.. ++.... +.....+ ..+.+++++..++..+.++.|.++|
T Consensus 150 -~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d 227 (361)
T 2oiz_A 150 -AAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSAD 227 (361)
T ss_dssp -GTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEE
T ss_pred -CCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEE
Confidence 0223335667765 6778888999999999865 554422 1112222 2334567888888888899999999
Q ss_pred CCCce--eEEeccC------CC----CCeEEEEEecCCCCCCCCCCccceeEEEEEEe----------CCCeEEEEECCC
Q 008939 370 MEDRK--VVAWGEG------HN----SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG----------QDTRLLLWDLEM 427 (548)
Q Consensus 370 ~~~~~--~~~~~~~------h~----~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~----------~Dg~i~lwd~~~ 427 (548)
+.... .+..+.- +. .....++|+| |+. +.+++.. .+..|.+||+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-------dg~-----~lyv~~~~~~~~~~~~~~~~~v~viD~~t 295 (361)
T 2oiz_A 228 FSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-------ASG-----RMYVFMHPDGKEGTHKFPAAEIWVMDTKT 295 (361)
T ss_dssp CSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-------TTT-----EEEEEEESSCCTTCTTCCCSEEEEEETTT
T ss_pred ecCCCceecccccccCccccccccccCCeeEEEEec-------CCC-----eEEEEEccCCCcccccCCCceEEEEECCC
Confidence 97543 2222110 11 1112378999 862 3444433 135899999999
Q ss_pred CeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCC--CceEEeecCCCCeeEEEEeCC
Q 008939 428 DEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL--SPLVAHRVHTEPLSGLIFTQE 496 (548)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~--~~~~~~~~h~~~V~~l~fspd 496 (548)
++.+..+..+. ...+.|++++. .+.+... ..+.+||..+. +.+..+..+......++|+|+
T Consensus 296 ~~~v~~i~~~~-p~~ia~spdg~------~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 296 KQRVARIPGRD-ALSMTIDQQRN------LMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp TEEEEEEECTT-CCEEEEETTTT------EEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred CcEEEEEecCC-eeEEEECCCCC------EEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence 99999998867 88888888873 2223333 77788888887 777776556666777888876
No 178
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.61 E-value=5.3e-12 Score=121.93 Aligned_cols=243 Identities=9% Similarity=0.015 Sum_probs=168.0
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecC-CeEEEEEccCCCCCCeEEEe--cCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVG-DAIFISDLNSQDKDPIKSIH--FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~-d~v~vwd~~~~~~~~i~~~~--~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
....+...+..++++++|.+.+.... +.|.+||.. + .+..+. .....+.+++++++ +.++++...++.|.
T Consensus 9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~---~~~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~ 81 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-G---KITEYPLPTPDAKVMCLTISSD---GEVWFTENAANKIG 81 (299)
T ss_dssp ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C---CEEEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEE
T ss_pred cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C---CeEEecCCcccCceeeEEECCC---CCEEEeCCCCCeEE
Confidence 33445567889999999998887664 489999987 3 233333 23467899999987 66555555578899
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
.||... + ... ... + .....+.++++.+++. ++++...++.|.+||. . +... .+
T Consensus 82 ~~~~~g------~-~~~-~~~-~---~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~-g~~~-~~----------- 134 (299)
T 2z2n_A 82 RITKKG------I-IKE-YTL-P---NPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-D-GKIR-EY----------- 134 (299)
T ss_dssp EECTTS------C-EEE-EEC-S---STTCCEEEEEECTTSC-EEEEETTTTEEEEECT-T-CCEE-EE-----------
T ss_pred EECCCC------c-EEE-EeC-C---CcCCCceeeEECCCCC-EEEEecCCceEEEECC-C-CCEE-Ee-----------
Confidence 998642 1 111 100 0 1245688999999987 7777667889999987 2 2110 00
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe-eeecCCceEEEEEccCCCEEEEEe
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG-GKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
....+...+.+++++++++++++...++.|.+||. +++.... +......+..+++.++|+++++..
T Consensus 135 ------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 201 (299)
T 2z2n_A 135 ------------ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI 201 (299)
T ss_dssp ------------ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET
T ss_pred ------------cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc
Confidence 00011256889999999987777766789999999 6665432 333445688999999999777776
Q ss_pred CCCeEEEEECCCceeEEe-ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 361 EDDLVQVWSMEDRKVVAW-GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
.++.|.+||. +++.... +..+...+.++++++ +| +++++...++.|..||. .++
T Consensus 202 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-------~g------~l~v~~~~~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 202 IGNKIGRITT-SGEITEFKIPTPNARPHAITAGA-------GI------DLWFTEWGANKIGRLTS-NNI 256 (299)
T ss_dssp TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-------TT------CEEEEETTTTEEEEEET-TTE
T ss_pred CCceEEEECC-CCcEEEEECCCCCCCceeEEECC-------CC------CEEEeccCCceEEEECC-CCc
Confidence 7889999999 6654332 334567889999998 88 56666657889999998 443
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.60 E-value=3.3e-11 Score=126.99 Aligned_cols=333 Identities=12% Similarity=0.030 Sum_probs=204.5
Q ss_pred eCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccce
Q 008939 138 FDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKL 216 (548)
Q Consensus 138 ~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~ 216 (548)
.++.+.++++..++ .|.++|..+.. .+..+.. ...+.+++|+|+ +++|++++.++.|.+||+... ..++
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~--v~~~i~~-g~~p~~v~~SpD---Gr~lyv~~~dg~V~viD~~~~----t~~~ 232 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYE--IKTVLDT-GYAVHISRLSAS---GRYLFVIGRDGKVNMIDLWMK----EPTT 232 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCC--EEEEEEC-SSCEEEEEECTT---SCEEEEEETTSEEEEEETTSS----SCCE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCe--EEEEEeC-CCCccceEECCC---CCEEEEEcCCCeEEEEECCCC----CCcE
Confidence 34545566666655 99999999844 7777763 447789999999 889999999999999998510 0122
Q ss_pred eeeeeeccCCcccCcceEEEEEe----cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCe
Q 008939 217 VGAHHYNKDGSVNNSRCTSVTWV----PGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 292 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~v~~l~~~----p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (548)
..... .......++|+ |+++.++++...++.|.++|..+.. ....++.... .+
T Consensus 233 v~~i~-------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~---------------~~ 289 (567)
T 1qks_A 233 VAEIK-------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGM---------------TY 289 (567)
T ss_dssp EEEEE-------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEE---------------CT
T ss_pred eEEEe-------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEecccc---------------cc
Confidence 22222 23346799999 6999455555567999999976521 1111110000 00
Q ss_pred eEeeec-CCCeEEEEECCCCCE-EEEEECCCeEEEEeCCCCeEE--EeeeecCCceEEEEEccCCCEEEEEe-CCCeEEE
Q 008939 293 ARWHIC-QGSINSIAFSTDGTY-LATVGRDGYLRVFDYSKEQLI--CGGKSYYGALLCCAWSMDGKYILTGG-EDDLVQV 367 (548)
Q Consensus 293 ~~~~~h-~~~v~~~~~sp~g~~-l~s~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~v 367 (548)
.....| ...+..+.+++++.. ++....+|.|.++|+...+.+ ..+ ........+.|+|+|++++++. .++.|.+
T Consensus 290 ~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~V 368 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVV 368 (567)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEE
Confidence 000001 125778888887654 445556799999999865432 222 2344577899999999887665 5789999
Q ss_pred EECCCceeEEeccC-----CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEECCC-------CeEEeee
Q 008939 368 WSMEDRKVVAWGEG-----HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDLEM-------DEIVVPL 434 (548)
Q Consensus 368 wd~~~~~~~~~~~~-----h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~~-------~~~~~~~ 434 (548)
+|+.+++.+..+.- |.+.-..+ ++| ++. ..+++.. .++.|.++|... .+.++.+
T Consensus 369 iD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p-------~~g-----~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i 435 (567)
T 1qks_A 369 IDTKEGKLVAIEDTGGQTPHPGRGANF-VHP-------TFG-----PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF 435 (567)
T ss_dssp EETTTTEEEEEEECSSSSBCCTTCEEE-EET-------TTE-----EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred EECCCCcEEEEEeccCcCCCCccceee-ECC-------CCC-----cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEE
Confidence 99999987765542 43212122 577 641 4455554 468999999987 5677777
Q ss_pred ecCCCC-CCceecCCCCccccCCee-eecccCCCCceeecCCC-----C-ceEEee--------cCCCCeeEEEEeCCe-
Q 008939 435 RRGPLG-GSPTFSTGSQSAHWDNVC-PVGTLQPAPSMRDVPKL-----S-PLVAHR--------VHTEPLSGLIFTQES- 497 (548)
Q Consensus 435 ~~~~~~-~~~~~~~~~~~~~~d~~~-~~g~~~~~~~~~d~~~~-----~-~~~~~~--------~h~~~V~~l~fspd~- 497 (548)
...... ..+.+++++...--+..+ .-......+.++|+.+. . .+..+. .....+..+.|+|++
T Consensus 436 ~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 515 (567)
T 1qks_A 436 PALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGT 515 (567)
T ss_dssp ECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSS
T ss_pred ecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCC
Confidence 764322 234456665311000000 00001246677777665 2 112332 123568899999985
Q ss_pred --EEEEE----CCCeEEEEeCCCCCc
Q 008939 498 --VLTVC----REGHIKIWMRPGVAE 517 (548)
Q Consensus 498 --l~t~s----~Dg~I~iW~~~~~~~ 517 (548)
+++.. .++.|.|+|..+.+.
T Consensus 516 ~~~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 516 EVWFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp EEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred EEEEEeecCCCCCCcEEEEECCCceE
Confidence 45543 479999999887654
No 180
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.60 E-value=2.6e-13 Score=129.47 Aligned_cols=239 Identities=10% Similarity=-0.004 Sum_probs=164.1
Q ss_pred CceeEEeCCCCCEEE-EecCC-eEEEEEccCCCCCCeEEEe-cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 132 SMTNTNFDGKGTYII-FNVGD-AIFISDLNSQDKDPIKSIH-FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~-~~~~d-~v~vwd~~~~~~~~i~~~~-~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
.+..++++++|.+++ ....+ .|++||..+.. ...+. .....+.+++++++ +. |+++..++.|++||....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~---g~-l~v~~~~~~i~~~d~~~~ 97 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TTVLPFNGLYQPQGLAVDGA---GT-VYVTDFNNRVVTLAAGSN 97 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTT---CC-EEEEETTTEEEEECTTCS
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc---cceEeeCCcCCcceeEECCC---CC-EEEEcCCCEEEEEeCCCc
Confidence 556899999999776 53444 89999876532 22221 22357889999987 66 555555889999987652
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
...... . .....+.++++.|++. ++++...++.|++|+...... ...
T Consensus 98 ------~~~~~~---~---~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~---~~~----------------- 144 (270)
T 1rwi_B 98 ------NQTVLP---F---DGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQ---TVL----------------- 144 (270)
T ss_dssp ------CCEECC---C---CSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSC---EEC-----------------
T ss_pred ------eEeeee---c---CCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCcee---Eee-----------------
Confidence 111100 0 1235688999999987 777777788999996543110 000
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 368 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vw 368 (548)
.......+.+++++++++++++...++.|.+||............+...+.+++++++|.++++...++.|.+|
T Consensus 145 ------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 145 ------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL 218 (270)
T ss_dssp ------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred ------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence 00111356789999999877766677899999998766544333344678899999999877777778999999
Q ss_pred ECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 369 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 369 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
|............+...+.+++++| +| .++++...++.|+++++...+
T Consensus 219 ~~~~~~~~~~~~~~~~~p~~i~~~~-------~g------~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 219 LAGSTTSTVLPFTGLNTPLAVAVDS-------DR------TVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CTTCSCCEECCCCSCSCEEEEEECT-------TC------CEEEEEGGGTEEEEECCCGGG
T ss_pred cCCCCcceeeccCCCCCceeEEECC-------CC------CEEEEECCCCEEEEEcCCCcc
Confidence 9976554433333446789999999 88 688888899999999987654
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.59 E-value=9.3e-13 Score=129.83 Aligned_cols=241 Identities=14% Similarity=0.173 Sum_probs=158.5
Q ss_pred ceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 133 MTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
+..++|++++..++....+ .+++|. .+.+..+..+...+.+++|+|+ +.+++++..++.|++||....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---g~l~~~~~~~~~i~~~d~~~~--- 76 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTIT-----AEPWLEISKKGLQLEGLNFDRQ---GQLFLLDVFEGNIFKINPETK--- 76 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEE-----CEEEEEEESSCCCEEEEEECTT---SCEEEEETTTCEEEEECTTTC---
T ss_pred cceeeecCCccceeEEeecccCcccc-----cceeEEEeccCccccCcEECCC---CCEEEEECCCCEEEEEeCCCC---
Confidence 4566777776665544333 788882 2255666656667899999987 776777888899999997651
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC----CcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD----GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
++..... .+...+.+++|+|++. ++++...+ +.|++||..... ....+..
T Consensus 77 ---~~~~~~~------~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~~--------------- 130 (333)
T 2dg1_A 77 ---EIKRPFV------SHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDN-LQDIIED--------------- 130 (333)
T ss_dssp ---CEEEEEE------CSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCS-CEEEECS---------------
T ss_pred ---cEEEEee------CCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCE-EEEEEcc---------------
Confidence 1111110 1356799999999998 77766665 689999976521 1000000
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEEC------CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE-Ee
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGR------DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT-GG 360 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~------dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s-gs 360 (548)
..+...+.+++++|+|+++++... .+.|..+|..+++.... ......+..++|+|+++.|+. ..
T Consensus 131 --------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~ 201 (333)
T 2dg1_A 131 --------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALSTDEKVLWVTET 201 (333)
T ss_dssp --------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEG
T ss_pred --------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeC
Confidence 011256889999999987776543 35677777665554332 223345789999999986654 45
Q ss_pred CCCeEEEEECCC-ceeEE--------eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEE
Q 008939 361 EDDLVQVWSMED-RKVVA--------WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 361 ~dg~I~vwd~~~-~~~~~--------~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~ 431 (548)
.++.|.+||+++ +..+. .+.++ ..+..+++++ +| +++++...++.|.+||. .++.+
T Consensus 202 ~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~-------~G------~l~v~~~~~~~v~~~d~-~g~~~ 266 (333)
T 2dg1_A 202 TANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDS-------DD------NLYVAMYGQGRVLVFNK-RGYPI 266 (333)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBT-------TC------CEEEEEETTTEEEEECT-TSCEE
T ss_pred CCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECC-------CC------CEEEEEcCCCEEEEECC-CCCEE
Confidence 678999999964 33221 12222 4678899999 88 67777777899999998 45544
Q ss_pred eee
Q 008939 432 VPL 434 (548)
Q Consensus 432 ~~~ 434 (548)
..+
T Consensus 267 ~~~ 269 (333)
T 2dg1_A 267 GQI 269 (333)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=3.6e-13 Score=147.32 Aligned_cols=238 Identities=14% Similarity=0.116 Sum_probs=152.6
Q ss_pred CCCCEEEEecCC------eEEEEEccCCCCCCeEEEe---cC---CCCceEEEecCCCCCCceEEEEEcCC-----cEEE
Q 008939 140 GKGTYIIFNVGD------AIFISDLNSQDKDPIKSIH---FS---NSNPVCHAFDQDAKDGHDLLIGLNSG-----DVYS 202 (548)
Q Consensus 140 ~~g~~l~~~~~d------~v~vwd~~~~~~~~i~~~~---~~---~~~~~~~~~~p~~~~~~~l~~g~~dg-----~I~i 202 (548)
|+|+++++...+ .+++.+...+. ...-+. +. ...+..++|+|+ +.+|+.+..++ +|++
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~lld~~~l~~~~~~~~~~~~~SPD---g~~la~~~~~~G~~~~~i~v 155 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGE--ARVFLDPNILSDDGTVALRGYAFSED---GEYFAYGLSASGSDWVTIKF 155 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSC--CEEEECGGGGCTTSCEEEEEEEECTT---SSEEEEEEEETTCSCEEEEE
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCC--cEEEECHHHhccCCCEEEEEEEECCC---CCEEEEEEcCCCCceEEEEE
Confidence 788888774422 34444444332 221111 11 124678899999 77888777654 8999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc----------------EEEEEcCCCCCC
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN----------------LYVYEKSKDGAG 266 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~----------------v~vwd~~~~~~~ 266 (548)
||+.+. +...... ....+..++|+||++ .|+.+..++. |++|++.+...
T Consensus 156 ~d~~tg-----~~~~~~~--------~~~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~- 220 (710)
T 2xdw_A 156 MKVDGA-----KELPDVL--------ERVKFSCMAWTHDGK-GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS- 220 (710)
T ss_dssp EETTTT-----EEEEEEE--------EEECSCCEEECTTSS-EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG-
T ss_pred EECCCC-----CCCcccc--------cCcccceEEEEeCCC-EEEEEEECCccccccccccccCCCCEEEEEECCCCcc-
Confidence 999762 2111111 122367899999999 6777766655 99999875211
Q ss_pred CCCcccccccceeeeecCCCCCCCCeeEee--ecCCCeEEEEECCCCCEEEEEEC-----CCeEEEEeCCC------Ce-
Q 008939 267 DSSFPVIKDQTQFSVAHPRYSKSNPIARWH--ICQGSINSIAFSTDGTYLATVGR-----DGYLRVFDYSK------EQ- 332 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~g~~l~s~~~-----dg~v~vwd~~~------~~- 332 (548)
.....+. .|...+..+.|+|||++|+..+. +..|.+||+.+ ++
T Consensus 221 -----------------------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 221 -----------------------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp -----------------------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred -----------------------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 0011111 13345788999999999988765 67899999986 42
Q ss_pred EEEeeeecCCceEEEEEccCCCEEEEEeCC----CeEEEEECCCce--eEEeccCCCC--CeEEEEEecCCCCCCCCCCc
Q 008939 333 LICGGKSYYGALLCCAWSMDGKYILTGGED----DLVQVWSMEDRK--VVAWGEGHNS--WVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 333 ~~~~~~~~~~~v~~l~~spdg~~l~sgs~d----g~I~vwd~~~~~--~~~~~~~h~~--~V~~v~~~p~~~~~~~dg~~ 404 (548)
....+..+...+.. .|+|+|+.|+..+.+ ..|.+||+.++. ....+..|.. .+..+.|++ ++
T Consensus 278 ~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~-- 347 (710)
T 2xdw_A 278 KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-------SN-- 347 (710)
T ss_dssp CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-------TT--
T ss_pred ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-------CC--
Confidence 34445556555554 588999988776653 369999998764 2234444544 688899987 76
Q ss_pred cceeEEEEEEeCCCe--EEEEECCCCeEEeee
Q 008939 405 ETVMYRFGSVGQDTR--LLLWDLEMDEIVVPL 434 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~--i~lwd~~~~~~~~~~ 434 (548)
.++++...|+. |.+||+.+++.+..+
T Consensus 348 ----~lv~~~~~~g~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 348 ----FLVLCYLHDVKNTLQLHDLATGALLKIF 375 (710)
T ss_dssp ----EEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred ----EEEEEEEECCEEEEEEEECCCCCEEEec
Confidence 78888888885 566677666654443
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.58 E-value=6.1e-13 Score=128.98 Aligned_cols=240 Identities=12% Similarity=0.073 Sum_probs=159.5
Q ss_pred CCceeEEeCCCCC-EEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 131 TSMTNTNFDGKGT-YIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 131 ~~v~~~~~~~~g~-~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
.-+..++|+++|+ +++++..+ .|+.||..++ +..+......+.+++++|+ +.++++...++.|.+||..+.
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~d---g~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNKQ---GHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----EEEEESSCSSEEEEEECTT---CCEEEEETTTTEEEEECSTTC
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----eEEEECCCCCcceeeECCC---CcEEEEecCCCeEEEEcCCCC
Confidence 3456799999999 55555544 9999999863 5566666778999999998 666655555688999997541
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEE----EeCC-----------CcEEEEEcCCCCCCCCCcccc
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV----GHAD-----------GNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s----~~~d-----------g~v~vwd~~~~~~~~~~~~~~ 273 (548)
+ +...... ........+++++++|+|. ++++ |..+ +.-.||.++..+.
T Consensus 101 -----~-~~~~~~~--~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-------- 163 (296)
T 3e5z_A 101 -----E-WESIADS--FEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-------- 163 (296)
T ss_dssp -----C-EEEEECE--ETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC--------
T ss_pred -----c-EEEEeec--cCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCCCC--------
Confidence 1 1111000 0001234578899999998 6666 3210 1123444433111
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC-CCeE---EEeeeecCCceEEEEE
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS-KEQL---ICGGKSYYGALLCCAW 349 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~-~~~~---~~~~~~~~~~v~~l~~ 349 (548)
+..+..+......++|+|+++.|++.+.++.|.+||+. ++++ ...+..+...+..+++
T Consensus 164 ------------------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~ 225 (296)
T 3e5z_A 164 ------------------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRV 225 (296)
T ss_dssp ------------------EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEE
T ss_pred ------------------EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEE
Confidence 12222334567899999999988767778999999997 5554 2223334456778999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEE-ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF-DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 350 spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~-~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+++|+++++. ++.|.+||.+ ++.+..+..+.. +.+++| .| ++ ..|..++.+ .|.-++.++.
T Consensus 226 d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~-------d~------~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 226 DAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGP-------EG------RTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp BTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEEST-------TS------CEEEEEETT-EEEEEECSCC
T ss_pred CCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECC-------CC------CEEEEEcCC-eEEEEEcccc
Confidence 9999866665 8899999987 777777777777 999999 47 77 566666665 4555666665
Q ss_pred eE
Q 008939 429 EI 430 (548)
Q Consensus 429 ~~ 430 (548)
++
T Consensus 288 ~~ 289 (296)
T 3e5z_A 288 GL 289 (296)
T ss_dssp BC
T ss_pred cc
Confidence 53
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=6e-13 Score=145.52 Aligned_cols=254 Identities=12% Similarity=0.080 Sum_probs=168.2
Q ss_pred CCCCceeEEeCCCCCEEEEecC----C--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc---
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVG----D--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD--- 199 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~----d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~--- 199 (548)
|...+..++|+|||++|++... + .|++||+.++. .+. .......+..++|+|+ +..|+.+..++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~--~~~-~~~~~~~~~~~~wspD---g~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK--ELP-DVLERVKFSCMAWTHD---GKGMFYNAYPQQDGK 196 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE--EEE-EEEEEECSCCEEECTT---SSEEEEEECCCCSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--CCc-ccccCcccceEEEEeC---CCEEEEEEECCcccc
Confidence 3345678999999999998532 2 89999999754 332 2222234678999999 778998888765
Q ss_pred -------------EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC-----CCcEEEEEcC
Q 008939 200 -------------VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA-----DGNLYVYEKS 261 (548)
Q Consensus 200 -------------I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~-----dg~v~vwd~~ 261 (548)
|++|++.+.. ....++. . ...+...+..+.|+|+++ +|+.... +..|++||+.
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~--~~~~~v~----~--~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQ--SEDILCA----E--FPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCG--GGCEEEE----C--CTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGG
T ss_pred ccccccccCCCCEEEEEECCCCc--ccceEEe----c--cCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECc
Confidence 9999987621 1111111 1 011345678999999999 5655543 5689999987
Q ss_pred CCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC----CeEEEEeCCCCeE--EE
Q 008939 262 KDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD----GYLRVFDYSKEQL--IC 335 (548)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d----g~v~vwd~~~~~~--~~ 335 (548)
...... . .......+..+...+.. .|+|+|+.|+..+.+ +.|.+||+.+++. ..
T Consensus 268 ~~~~~~------~-------------~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~ 327 (710)
T 2xdw_A 268 QESNGI------T-------------GILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK 327 (710)
T ss_dssp GSSSSS------C-------------SSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE
T ss_pred cccccc------C-------------CccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccce
Confidence 410000 0 00012233334444544 488888888777653 3699999987641 23
Q ss_pred eeeecCC--ceEEEEEccCCCEEEEEeCCCe--EEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE
Q 008939 336 GGKSYYG--ALLCCAWSMDGKYILTGGEDDL--VQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 336 ~~~~~~~--~v~~l~~spdg~~l~sgs~dg~--I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
.+..+.. .+..++|++++.++++...|+. |.+||+.+++.+..+..+...|..+.++| ++. .++
T Consensus 328 ~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~-------d~~-----~l~ 395 (710)
T 2xdw_A 328 VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQK-------KDT-----EIF 395 (710)
T ss_dssp EEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCT-------TCS-----EEE
T ss_pred eccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCC-------CCC-----EEE
Confidence 3334433 6888999988888888888884 56678777887778887888899999988 772 233
Q ss_pred EEEe---CCCeEEEEECCCCe
Q 008939 412 GSVG---QDTRLLLWDLEMDE 429 (548)
Q Consensus 412 ~s~~---~Dg~i~lwd~~~~~ 429 (548)
++.+ ..+.|.+||+.+++
T Consensus 396 ~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEECSSCCCEEEEEETTSSS
T ss_pred EEEeCCCCCCEEEEEECCCCc
Confidence 3333 35789999999877
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.55 E-value=1.3e-12 Score=124.44 Aligned_cols=239 Identities=10% Similarity=0.010 Sum_probs=163.2
Q ss_pred CceEEEecCCCCCCceEE-EEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC
Q 008939 175 NPVCHAFDQDAKDGHDLL-IGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 253 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~-~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg 253 (548)
.+.+++++++ +.+++ +...++.|.+||..... ... .. ......+.+|++.+++. ++++.. ++
T Consensus 25 ~p~~i~~~~~---g~l~v~~~~~~~~i~~~~~~~~~------~~~-~~-----~~~~~~p~~i~~~~~g~-l~v~~~-~~ 87 (270)
T 1rwi_B 25 SPSGVAVDSA---GNVYVTSEGMYGRVVKLATGSTG------TTV-LP-----FNGLYQPQGLAVDGAGT-VYVTDF-NN 87 (270)
T ss_dssp CEEEEEECTT---CCEEEEECSSSCEEEEECC-----------EE-CC-----CCSCCSCCCEEECTTCC-EEEEET-TT
T ss_pred CccceEECCC---CCEEEEccCCCCcEEEecCCCcc------cce-Ee-----eCCcCCcceeEECCCCC-EEEEcC-CC
Confidence 7889999987 66555 33677899999865421 100 00 01234678899999987 666555 88
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL 333 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~ 333 (548)
.|++||..... ...+. ......+.+++++++++++++...++.|.+|+..+...
T Consensus 88 ~i~~~d~~~~~--~~~~~------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 88 RVVTLAAGSNN--QTVLP------------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ 141 (270)
T ss_dssp EEEEECTTCSC--CEECC------------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC
T ss_pred EEEEEeCCCce--Eeeee------------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee
Confidence 99999976421 10000 00114688999999998777777788999998765544
Q ss_pred EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 008939 334 ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413 (548)
Q Consensus 334 ~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s 413 (548)
..........+.+++++++|+++++...++.|.+||............+...+.+|++++ +| +++++
T Consensus 142 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-------~g------~l~v~ 208 (270)
T 1rwi_B 142 TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-------AG------TVYVT 208 (270)
T ss_dssp EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-------TC------CEEEE
T ss_pred EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC-------CC------CEEEE
Confidence 332223334678899999999777777788999999987665544344446789999999 88 67777
Q ss_pred EeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEE
Q 008939 414 VGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIF 493 (548)
Q Consensus 414 ~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~f 493 (548)
...++.|.+||........ .. ..+...+.+|++
T Consensus 209 ~~~~~~v~~~~~~~~~~~~-~~----------------------------------------------~~~~~~p~~i~~ 241 (270)
T 1rwi_B 209 EHNTNQVVKLLAGSTTSTV-LP----------------------------------------------FTGLNTPLAVAV 241 (270)
T ss_dssp ETTTSCEEEECTTCSCCEE-CC----------------------------------------------CCSCSCEEEEEE
T ss_pred ECCCCcEEEEcCCCCccee-ec----------------------------------------------cCCCCCceeEEE
Confidence 7778899999986543211 00 012345789999
Q ss_pred eCCe--EEEEECCCeEEEEeCCCCC
Q 008939 494 TQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 494 spd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
++++ +++...++.|+++++...+
T Consensus 242 ~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCCEEEEECCCCEEEEEcCCCcc
Confidence 9974 6777889999999987644
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=1.8e-12 Score=125.59 Aligned_cols=212 Identities=9% Similarity=0.018 Sum_probs=143.9
Q ss_pred CeEEEecCCCCceEEEecCCCCCCc-eEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGH-DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~-~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
.+..+.-....+.+++|+|+ ++ +++++..++.|+.||.... ... .. .+...+.+++++|++.
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~---g~~l~~~~~~~~~i~~~~~~~~-------~~~-~~------~~~~~~~~l~~~~dg~ 81 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPA---RSAVIFSDVRQNRTWAWSDDGQ-------LSP-EM------HPSHHQNGHCLNKQGH 81 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGG---GTEEEEEEGGGTEEEEEETTSC-------EEE-EE------SSCSSEEEEEECTTCC
T ss_pred cEEEEecCCccccCCeEeCC---CCEEEEEeCCCCEEEEEECCCC-------eEE-EE------CCCCCcceeeECCCCc
Confidence 45555555667889999998 66 7888888999999998751 111 11 1356789999999998
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEE----E-
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV----G- 318 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~----~- 318 (548)
++++...++.|.+||..+.. ......... ......+..++++|+|+++++. +
T Consensus 82 -l~v~~~~~~~i~~~d~~~g~-~~~~~~~~~---------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~ 138 (296)
T 3e5z_A 82 -LIACSHGLRRLERQREPGGE-WESIADSFE---------------------GKKLNSPNDVCLAPDGSLWFSDPTYGID 138 (296)
T ss_dssp -EEEEETTTTEEEEECSTTCC-EEEEECEET---------------------TEECCCCCCEEECTTSCEEEEECSHHHH
T ss_pred -EEEEecCCCeEEEEcCCCCc-EEEEeeccC---------------------CCCCCCCCCEEECCCCCEEEECCccccc
Confidence 77777677899999986421 100000000 0011356789999999988873 2
Q ss_pred ------------CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC-Ccee---EEeccCC
Q 008939 319 ------------RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME-DRKV---VAWGEGH 382 (548)
Q Consensus 319 ------------~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~-~~~~---~~~~~~h 382 (548)
..+.|..++.. ++.. .+..+......++|+|+++.|++.+.++.|.+||+. +++. ...+..+
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~ 216 (296)
T 3e5z_A 139 KPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE 216 (296)
T ss_dssp CGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS
T ss_pred cccccccccccCCCcEEEEECCC-CCEE-EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC
Confidence 13456666655 4433 344556678899999999988777788999999997 4544 2333445
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
...+.++++++ +| +++++. ++.|.+||.. ++.+..+
T Consensus 217 ~~~p~~i~~d~-------~G------~l~v~~--~~~v~~~~~~-g~~~~~~ 252 (296)
T 3e5z_A 217 PGKTDGLRVDA-------GG------LIWASA--GDGVHVLTPD-GDELGRV 252 (296)
T ss_dssp SSCCCSEEEBT-------TS------CEEEEE--TTEEEEECTT-SCEEEEE
T ss_pred CCCCCeEEECC-------CC------CEEEEc--CCeEEEECCC-CCEEEEE
Confidence 66678899999 88 555554 8899999986 5554433
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.54 E-value=9.4e-12 Score=122.58 Aligned_cols=220 Identities=14% Similarity=0.133 Sum_probs=143.8
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC----CcEEEE
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS----GDVYSV 203 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d----g~I~iw 203 (548)
+...+..++|+++|++++++..+ .|++||.+++. ...........+.+++|+|+ +.++++...+ +.|++|
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~~d---g~l~v~~~~~~~~~~~i~~~ 117 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE--IKRPFVSHKANPAAIKIHKD---GRLFVCYLGDFKSTGGIFAA 117 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEEECSSSSEEEEEECTT---SCEEEEECTTSSSCCEEEEE
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc--EEEEeeCCCCCcceEEECCC---CcEEEEeCCCCCCCceEEEE
Confidence 34456789999999977776655 89999988643 33222235678999999998 6666655555 589999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC------CCcEEEEEcCCCCCCCCCcccccccc
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA------DGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
|.+.. .+.... ... .....+.+++++|++. ++++... .+.|+.||.... .
T Consensus 118 d~~~~------~~~~~~--~~~--~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~-~------------ 173 (333)
T 2dg1_A 118 TENGD------NLQDII--EDL--STAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR-T------------ 173 (333)
T ss_dssp CTTSC------SCEEEE--CSS--SSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC-C------------
T ss_pred eCCCC------EEEEEE--ccC--ccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCC-E------------
Confidence 87652 111000 000 1345789999999997 6665543 244555544321 0
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCC-CeEEEe--------eeecCCceEEE
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSK-EQLICG--------GKSYYGALLCC 347 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~-~~~~~~--------~~~~~~~v~~l 347 (548)
+..+..+...+..++|+|+++.|+.+ ..++.|.+||+.+ ++.+.. +..+ ..+..+
T Consensus 174 --------------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i 238 (333)
T 2dg1_A 174 --------------VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSC 238 (333)
T ss_dssp --------------EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEE
T ss_pred --------------EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCce
Confidence 11111122457889999999866555 4578999999964 332211 1111 367889
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCC------CeEEEEEec
Q 008939 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS------WVSGVAFDS 393 (548)
Q Consensus 348 ~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~------~V~~v~~~p 393 (548)
+++++|+++++...++.|.+||.+ ++.+..+..+.. .+.+++|+|
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred EECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECC
Confidence 999999988888788999999984 666655543432 689999998
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=3e-12 Score=126.21 Aligned_cols=247 Identities=10% Similarity=0.029 Sum_probs=164.6
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcEEEEEeeeccc
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSVSLRQQLQ 210 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iwdl~~~~~ 210 (548)
.+..+.++.+.-+++....+.|.+||..+.+ .+..+. ....+..++++++ + .|+++. .++.|.+||+.+.
T Consensus 45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~--~~~~i~-~~~~p~~i~~~~~---g-~lyv~~~~~~~v~~iD~~t~-- 115 (328)
T 3dsm_A 45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTFK--EVGRIT-GFTSPRYIHFLSD---E-KAYVTQIWDYRIFIINPKTY-- 115 (328)
T ss_dssp CEEEEEEETTEEEEEEGGGTEEEEEETTTCC--EEEEEE-CCSSEEEEEEEET---T-EEEEEEBSCSEEEEEETTTT--
T ss_pred cceEEEEECCEEEEEEcCCCEEEEEECcccE--EEEEcC-CCCCCcEEEEeCC---C-eEEEEECCCCeEEEEECCCC--
Confidence 3455667543333333334599999999854 777775 4568999999887 5 466665 7899999998762
Q ss_pred ccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 211 DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
++........ ..........|++ .++. ++++.. .++.|.+||+.+..
T Consensus 116 ----~~~~~i~~g~-~~~~~~~p~~i~~-~~~~-lyv~~~~~~~~v~viD~~t~~------------------------- 163 (328)
T 3dsm_A 116 ----EITGYIECPD-MDMESGSTEQMVQ-YGKY-VYVNCWSYQNRILKIDTETDK------------------------- 163 (328)
T ss_dssp ----EEEEEEECTT-CCTTTCBCCCEEE-ETTE-EEEEECTTCCEEEEEETTTTE-------------------------
T ss_pred ----eEEEEEEcCC-ccccCCCcceEEE-ECCE-EEEEcCCCCCEEEEEECCCCe-------------------------
Confidence 2222222111 0011124566777 3433 444443 48899999988621
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECC----------CeEEEEeCCCCeEEEeeeec-CCceEEEEEccCCCEEEE
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRD----------GYLRVFDYSKEQLICGGKSY-YGALLCCAWSMDGKYILT 358 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d----------g~v~vwd~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s 358 (548)
.+..+.. ......++++|+|++++++..+ +.|.++|..+++.+..+... ......++++|++++|++
T Consensus 164 -~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 164 -VVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp -EEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred -EEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence 1111111 1335678999999877766554 78999999999887666532 236889999999999888
Q ss_pred EeCCCeEEEEECCCceeEEe--ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE----eCCCeEEEEECCCCeEEe
Q 008939 359 GGEDDLVQVWSMEDRKVVAW--GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV----GQDTRLLLWDLEMDEIVV 432 (548)
Q Consensus 359 gs~dg~I~vwd~~~~~~~~~--~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~----~~Dg~i~lwd~~~~~~~~ 432 (548)
+.. .|.+||..+++.... +..+......++++| ++. +++++. ..++.|.+||.. ++.+.
T Consensus 242 ~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp-------~~g-----~lyva~~~~y~~~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 242 INN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNP-------NNG-----EVYVADAIDYQQQGIVYRYSPQ-GKLID 306 (328)
T ss_dssp ESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECT-------TTC-----CEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred Ecc--EEEEEECCCCceeeeeeecCCCCceEEEEEcC-------CCC-----eEEEEcccccccCCEEEEECCC-CCEEE
Confidence 765 899999998875421 222246788999998 542 566666 678999999998 88888
Q ss_pred eeec
Q 008939 433 PLRR 436 (548)
Q Consensus 433 ~~~~ 436 (548)
.+..
T Consensus 307 ~i~~ 310 (328)
T 3dsm_A 307 EFYV 310 (328)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7765
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=4.4e-13 Score=146.23 Aligned_cols=247 Identities=11% Similarity=0.010 Sum_probs=158.7
Q ss_pred CCCCceeEEeCCCCCEEEEec-----CC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc---
Q 008939 129 SSTSMTNTNFDGKGTYIIFNV-----GD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD--- 199 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~-----~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~--- 199 (548)
|...+..++|+|||++|++.. .+ .|++||+.++. .+............++|+|+ +..|+.+..+..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~--~~~~~~~~~~~~~~~~wspD---g~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE--WSKVDVIEGGKYATPKWTPD---SKGFYYEWLPTDPSI 193 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCC--BCSSCCBSCCTTCCCEECTT---SSEEEEEECCCCTTS
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCC--CcCCcccCcccccceEEecC---CCEEEEEEecCCCCC
Confidence 445677899999999999632 23 89999999865 32111122222368899999 778988888765
Q ss_pred ----------EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC----cEEEEEcCCCCC
Q 008939 200 ----------VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG----NLYVYEKSKDGA 265 (548)
Q Consensus 200 ----------I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg----~v~vwd~~~~~~ 265 (548)
|++|++.+... ...++.. ...+...+..+.|+|+|+ +|+..+.++ .|++|+...
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~--~~~lv~~------~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~--- 261 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPS--KDTVVHE------RTGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGE--- 261 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGG--GCEEEEC------CCCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTC---
T ss_pred ccccCCCCCEEEEEECCCCch--hceEEEe------cCCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCC---
Confidence 99999876211 1112111 111446788999999998 555555444 555554322
Q ss_pred CCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC----CCeEEEEeCCCCeE---EEeee
Q 008939 266 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR----DGYLRVFDYSKEQL---ICGGK 338 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~v~vwd~~~~~~---~~~~~ 338 (548)
.....+..+...+....| +++. |+..+. ++.|.+||+.+++. ...+.
T Consensus 262 ------------------------~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 315 (695)
T 2bkl_A 262 ------------------------KDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVP 315 (695)
T ss_dssp ------------------------SSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC
T ss_pred ------------------------CceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEec
Confidence 112333344455666666 5666 554443 58899999987652 22233
Q ss_pred ec-CCceEEEEEccCCCEEEEEeCCCeEEEEECC-CceeEEeccCC-CCCeEEEEEecCCCCCCCCCCccceeEEEEEE-
Q 008939 339 SY-YGALLCCAWSMDGKYILTGGEDDLVQVWSME-DRKVVAWGEGH-NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV- 414 (548)
Q Consensus 339 ~~-~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~-~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~- 414 (548)
.+ ...+..++|+ ++.++++...|+..+||.++ +++.+..+..+ ...|..+.++| |+. .++++.
T Consensus 316 ~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~-------d~~-----~l~~~~s 382 (695)
T 2bkl_A 316 EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLE-------DLD-----DAYYVFT 382 (695)
T ss_dssp CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCT-------TCS-----EEEEEEE
T ss_pred CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCC-------CCC-----EEEEEEc
Confidence 23 4467888888 77788889999988888665 35556666655 66777888888 772 233333
Q ss_pred --eCCCeEEEEECCCCeEE
Q 008939 415 --GQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 415 --~~Dg~i~lwd~~~~~~~ 431 (548)
...+.|.+||+.+++..
T Consensus 383 s~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 383 SFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp ETTEEEEEEEEETTTCCEE
T ss_pred CCCCCCEEEEEECCCCcEE
Confidence 24578999999988743
No 190
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.52 E-value=1.9e-12 Score=128.24 Aligned_cols=223 Identities=16% Similarity=0.178 Sum_probs=147.0
Q ss_pred CceeEEeCCCCCEEEEecC----C--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC--------
Q 008939 132 SMTNTNFDGKGTYIIFNVG----D--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS-------- 197 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~----d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d-------- 197 (548)
.+..+.|+|||+.|++... . .|++||+.++. .. .+...+. +..++|+|+ +..|+.+..+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~--~~-~l~~~~~-~~~~~wspd---g~~l~~~~~~~~~~~~~~ 132 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS--SK-KILEAKN-IRSLEWNED---SRKLLIVGFKRREDEDFI 132 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE--EE-EEEEESE-EEEEEECTT---SSEEEEEEECCCC-----
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc--eE-EEEcCCC-ccceeECCC---CCEEEEEEccCCCcCCcE
Confidence 3567899999999998653 2 58888887643 32 3332334 899999999 7778877642
Q ss_pred -------------------CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC-----
Q 008939 198 -------------------GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG----- 253 (548)
Q Consensus 198 -------------------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg----- 253 (548)
..|++||+... + ...... .. .+..+.|+|++ +++++..++
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~-----~-~~~~l~-------~~-~~~~~~~spdg--~~~~~~~~~~~~~~ 196 (347)
T 2gop_A 133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESE-----E-VIEEFE-------KP-RFSSGIWHRDK--IVVNVPHREIIPQY 196 (347)
T ss_dssp ----CCCC---------CEEEEEEEETTTT-----E-EEEEEE-------EE-TTCEEEEETTE--EEEEEECCCSSCCS
T ss_pred EEcccceeecCcccccCccceEEEEECCCC-----e-EEeeec-------CC-CcccccCCCCe--EEEEEecccccccc
Confidence 56888888651 1 101111 12 57789999998 666665542
Q ss_pred --cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC--------CeE
Q 008939 254 --NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD--------GYL 323 (548)
Q Consensus 254 --~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d--------g~v 323 (548)
...||.++. +. +..+..+ ..+..+ +|||++|+.++.+ ..|
T Consensus 197 ~~~~~l~~~d~-~~--------------------------~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l 246 (347)
T 2gop_A 197 FKFWDIYIWED-GK--------------------------EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKL 246 (347)
T ss_dssp SCCEEEEEEET-TE--------------------------EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEE
T ss_pred cccccEEEeCC-Cc--------------------------eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceE
Confidence 344554442 11 1112222 334444 8999998888754 368
Q ss_pred EEEeCCCCeEEEeeeecCCceEE-EEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCC
Q 008939 324 RVFDYSKEQLICGGKSYYGALLC-CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDG 402 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~-l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg 402 (548)
.+|| +++.......+...+.. +.|+ |+ ++++++.++.++|| +.+++....+ .+...|.+++|+|
T Consensus 247 ~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--------- 311 (347)
T 2gop_A 247 YIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--------- 311 (347)
T ss_dssp EEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS---------
T ss_pred EEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC---------
Confidence 8888 56655545556677886 9999 88 89999999999999 8866654444 4577899999974
Q ss_pred CccceeEEEEEEeCCCeE-EEEECCCCe
Q 008939 403 TAETVMYRFGSVGQDTRL-LLWDLEMDE 429 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i-~lwd~~~~~ 429 (548)
.++++++.++.. .||.+. ++
T Consensus 312 ------~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 312 ------IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp ------SEEEEEECSSSCCEEEEES-SS
T ss_pred ------cEEEEEcCCCChHHheEeC-Cc
Confidence 256666666654 777766 54
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=8.9e-12 Score=119.44 Aligned_cols=241 Identities=15% Similarity=0.133 Sum_probs=167.5
Q ss_pred CCCEEEEecCC-eEEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceee
Q 008939 141 KGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVG 218 (548)
Q Consensus 141 ~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~ 218 (548)
.+++|++++.+ .|++||.++++ .+..+..+. ..+.++++.|+ +++|+ +.++.|+.||. + ++.+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~--~~w~~~~~~~~~~~~~~~~pd---G~ilv--s~~~~V~~~d~-~-----G~~~W~ 70 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKE--IVWEYPLEKGWECNSVAATKA---GEILF--SYSKGAKMITR-D-----GRELWN 70 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTE--EEEEEECCTTCCCCEEEECTT---SCEEE--ECBSEEEEECT-T-----SCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCe--EEEEeCCCccCCCcCeEECCC---CCEEE--eCCCCEEEECC-C-----CCEEEE
Confidence 45677777776 99999998865 777777654 47899999998 76666 45778999987 3 233322
Q ss_pred eeeeccCCcccCcceEEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee
Q 008939 219 AHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA-DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI 297 (548)
Q Consensus 219 ~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (548)
... .....+.++.+.|++. ++++.+. ++.|..+|. .++....+...... ..
T Consensus 71 -~~~-----~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~--~Gk~l~~~~~~~~~-------------------~~ 122 (276)
T 3no2_A 71 -IAA-----PAGCEMQTARILPDGN-ALVAWCGHPSTILEVNM--KGEVLSKTEFETGI-------------------ER 122 (276)
T ss_dssp -EEC-----CTTCEEEEEEECTTSC-EEEEEESTTEEEEEECT--TSCEEEEEEECCSC-------------------SS
T ss_pred -EcC-----CCCccccccEECCCCC-EEEEecCCCCEEEEEeC--CCCEEEEEeccCCC-------------------Cc
Confidence 111 0134678899999999 7777766 666766664 34332222110000 00
Q ss_pred cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
+......+++.++|++|++...++.|.+||.+ ++.+..+... ....++...++|++++++..++.|..+|.++++.+.
T Consensus 123 ~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 123 PHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR 200 (276)
T ss_dssp GGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred ccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence 11234456788999999999999999999998 9999888754 456678889999999999888899999999999887
Q ss_pred eccCCC------CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC--------CeEEEEEC-CCCeEEeeeecC
Q 008939 378 WGEGHN------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD--------TRLLLWDL-EMDEIVVPLRRG 437 (548)
Q Consensus 378 ~~~~h~------~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D--------g~i~lwd~-~~~~~~~~~~~~ 437 (548)
.+..+. ..+..+...+ +| .++++..+. +..+++++ .+++.+.++...
T Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~-------~G------~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 201 RVNANDIEGVQLFFVAQLFPLQ-------NG------GLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp EEEGGGSBSCCCSEEEEEEECT-------TS------CEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred EecCCCCCCccccccccceEcC-------CC------CEEEEeccCccccccccCCceEEEECCCCCEEEEecCc
Confidence 775332 3478888888 88 566665321 23456666 577887777653
No 192
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.49 E-value=2.2e-11 Score=118.72 Aligned_cols=240 Identities=13% Similarity=0.152 Sum_probs=161.7
Q ss_pred CceeEEeCCCCCEEEE-------ecC-CeEEEEEccCCCCCCeEEEec-----CCCCceEEEecCCCCCCceEEEEEcCC
Q 008939 132 SMTNTNFDGKGTYIIF-------NVG-DAIFISDLNSQDKDPIKSIHF-----SNSNPVCHAFDQDAKDGHDLLIGLNSG 198 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~-------~~~-d~v~vwd~~~~~~~~i~~~~~-----~~~~~~~~~~~p~~~~~~~l~~g~~dg 198 (548)
.+..++|+++|.++++ ... ..|++||..++. +..+.. ....+.+++++++ +..|+++...+
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~i~~~~~---~g~l~v~~~~~ 92 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---KTVICKPEVNGYGGIPAGCQCDRD---ANQLFVADMRL 92 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---EEEEECCEETTEECCEEEEEECSS---SSEEEEEETTT
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc---EEEEEecccCCCCCCCceEEEecC---CCcEEEEECCC
Confidence 4568899999988877 444 489999987644 333332 3357899999987 34577777666
Q ss_pred cEEEEEeeecccccccceeee-eeeccCCcccCcceEEEEEecCCCcEEEEEeCC---------------CcEEEEEcCC
Q 008939 199 DVYSVSLRQQLQDVGKKLVGA-HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD---------------GNLYVYEKSK 262 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d---------------g~v~vwd~~~ 262 (548)
.|.+||... + +... .. .........+.++++.+++. ++++...+ +.|+.||..
T Consensus 93 ~l~~~d~~g------~-~~~~~~~--~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (314)
T 1pjx_A 93 GLLVVQTDG------T-FEEIAKK--DSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD- 161 (314)
T ss_dssp EEEEEETTS------C-EEECCSB--CTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred CEEEEeCCC------C-EEEEEec--cCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-
Confidence 898998652 1 1110 00 00011235688999999997 66665544 455555533
Q ss_pred CCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC----CCCCEEEEE-ECCCeEEEEeCC-CCeE---
Q 008939 263 DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS----TDGTYLATV-GRDGYLRVFDYS-KEQL--- 333 (548)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s----p~g~~l~s~-~~dg~v~vwd~~-~~~~--- 333 (548)
+. +..+..+......++|+ |+++.|+.+ ..++.|.+||+. +++.
T Consensus 162 -g~--------------------------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~ 214 (314)
T 1pjx_A 162 -GQ--------------------------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK 214 (314)
T ss_dssp -SC--------------------------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE
T ss_pred -CC--------------------------EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc
Confidence 11 11111122456789999 999766655 467899999986 4542
Q ss_pred --EEeeeecC-CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeE-
Q 008939 334 --ICGGKSYY-GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY- 409 (548)
Q Consensus 334 --~~~~~~~~-~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~- 409 (548)
...+..+. ..+..++++++|+++++...++.|.+||.++++.+..+..+...+.+++|+| +| .
T Consensus 215 ~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~-------dg------~~ 281 (314)
T 1pjx_A 215 KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-------QT------KT 281 (314)
T ss_dssp EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECT-------TS------SE
T ss_pred eEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECC-------CC------CE
Confidence 22233333 5678899999999888887889999999987777666666778899999999 88 4
Q ss_pred EEEEEeCCCeEEEEECCCC
Q 008939 410 RFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 410 ~l~s~~~Dg~i~lwd~~~~ 428 (548)
++++...++.|..||+...
T Consensus 282 l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 282 IFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEETTTTEEEEEECSSC
T ss_pred EEEEeCCCCeEEEEeCCCC
Confidence 5556666789999998753
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.49 E-value=1.2e-12 Score=142.81 Aligned_cols=230 Identities=8% Similarity=-0.019 Sum_probs=144.2
Q ss_pred CCCCEEEEecCC------eEEEEEccCCCCCCeEEEec------CCCCceEEEecCCCCCCceEEEEEc-----CCcEEE
Q 008939 140 GKGTYIIFNVGD------AIFISDLNSQDKDPIKSIHF------SNSNPVCHAFDQDAKDGHDLLIGLN-----SGDVYS 202 (548)
Q Consensus 140 ~~g~~l~~~~~d------~v~vwd~~~~~~~~i~~~~~------~~~~~~~~~~~p~~~~~~~l~~g~~-----dg~I~i 202 (548)
++|+++++...+ .+++.+...+. ...-+.. +...+..++|+|+ +.+|+.... +.+|++
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~l~d~~~~a~~~~~~~~~~~~SPD---G~~la~~~~~~G~~~~~i~v 151 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQ--EKVLLDPNGWSKDGTVSLGTWAVSWD---GKKVAFAQKPNAADEAVLHV 151 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSC--CEEEECGGGSSSSSCEEEEEEEECTT---SSEEEEEEEETTCSCCEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCC--cEEEEchHHhccCCCEEEEEEEECCC---CCEEEEEECCCCCceEEEEE
Confidence 688888775432 34444444332 2222211 1225788999999 777875433 357999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc-------------EEEEEcCCCCCCCCC
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN-------------LYVYEKSKDGAGDSS 269 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~-------------v~vwd~~~~~~~~~~ 269 (548)
||+.+. +.+... . ........++|+||++ .|+.++.|.. |++|++.+....
T Consensus 152 ~dl~tg-----~~~~~~-~------~~~~~~~~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~--- 215 (695)
T 2bkl_A 152 IDVDSG-----EWSKVD-V------IEGGKYATPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK--- 215 (695)
T ss_dssp EETTTC-----CBCSSC-C------BSCCTTCCCEECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG---
T ss_pred EECCCC-----CCcCCc-c------cCcccccceEEecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchh---
Confidence 999862 211000 0 0111226899999999 7777777665 999998763110
Q ss_pred cccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC----eEEEEeCCCCeEEEeeeecCCceE
Q 008939 270 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG----YLRVFDYSKEQLICGGKSYYGALL 345 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg----~v~vwd~~~~~~~~~~~~~~~~v~ 345 (548)
...+.....|...+..+.|+|||++|+..+.++ .|.+||..+++.. .+..+...+.
T Consensus 216 -------------------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~ 275 (695)
T 2bkl_A 216 -------------------DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKY 275 (695)
T ss_dssp -------------------CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCE
T ss_pred -------------------ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceE
Confidence 001111122345788999999999998887666 6777777655543 3444555666
Q ss_pred EEEEccCCCEEEEEeC----CCeEEEEECCCcee---EEeccCC-CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 346 CCAWSMDGKYILTGGE----DDLVQVWSMEDRKV---VAWGEGH-NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 346 ~l~~spdg~~l~sgs~----dg~I~vwd~~~~~~---~~~~~~h-~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
...| ++|. |+..+. ++.|.+||+++++. ...+..+ ...|..++|+ ++ .++++...|
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--------~~------~lv~~~~~d 339 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--------GG------HLSLEYLKD 339 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--------TT------EEEEEEEET
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--------CC------EEEEEEEEC
Confidence 6666 6676 554443 57899999987653 3333333 4567888886 44 688999999
Q ss_pred CeEEEEECC
Q 008939 418 TRLLLWDLE 426 (548)
Q Consensus 418 g~i~lwd~~ 426 (548)
+..+||.+.
T Consensus 340 g~~~l~~~~ 348 (695)
T 2bkl_A 340 ATSEVRVAT 348 (695)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 998888665
No 194
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.47 E-value=1.2e-10 Score=122.74 Aligned_cols=296 Identities=10% Similarity=0.019 Sum_probs=191.5
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
+..+++...++.|.++|..+ .+++.... ....+..+.|+|+++ ++++++.|+.|.+||+....
T Consensus 167 ~~~~V~~~~~~~V~viD~~t------~~v~~~i~-------~g~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t--- 229 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGST------YEIKTVLD-------TGYAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKE--- 229 (567)
T ss_dssp GEEEEEETTTTEEEEEETTT------CCEEEEEE-------CSSCEEEEEECTTSC-EEEEEETTSEEEEEETTSSS---
T ss_pred ceEEEEeCCCCeEEEEECCC------CeEEEEEe-------CCCCccceEECCCCC-EEEEEcCCCeEEEEECCCCC---
Confidence 44556666788999999876 23333222 233566999999999 88888999999999985110
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC----CCCCEEEEEE-CCCeEEEEeCCCCeEEEeeee---
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS----TDGTYLATVG-RDGYLRVFDYSKEQLICGGKS--- 339 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s----p~g~~l~s~~-~dg~v~vwd~~~~~~~~~~~~--- 339 (548)
...+..+... .....++|+ |||++++++. .++.|.|+|..+.+.+..+..
T Consensus 230 ---------------------~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~ 287 (567)
T 1qks_A 230 ---------------------PTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 287 (567)
T ss_dssp ---------------------CCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE
T ss_pred ---------------------CcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccc
Confidence 1122222222 346789999 6999888766 459999999999988776542
Q ss_pred -------c-CCceEEEEEccCCCE-EEEEeCCCeEEEEECCCcee--EEeccCCCCCeEEEEEecCCCCCCCCCCcccee
Q 008939 340 -------Y-YGALLCCAWSMDGKY-ILTGGEDDLVQVWSMEDRKV--VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 340 -------~-~~~v~~l~~spdg~~-l~sgs~dg~I~vwd~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
| ...+..+..++++.. ++...++|.|.++|..+.+. +..+. .......+.|+| ||.
T Consensus 288 ~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-------dgr----- 354 (567)
T 1qks_A 288 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-------SHR----- 354 (567)
T ss_dssp CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-------TSC-----
T ss_pred ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-------CCC-----
Confidence 1 125778888988765 44555679999999987532 22332 445677899999 882
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeec-C---CCCCCce-ecCCCCccccCCeeeeccc-CCCCceeecCC-------C
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRR-G---PLGGSPT-FSTGSQSAHWDNVCPVGTL-QPAPSMRDVPK-------L 475 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~-~---~~~~~~~-~~~~~~~~~~d~~~~~g~~-~~~~~~~d~~~-------~ 475 (548)
++++++..++.|.++|+.+++++..+.. . ++..... +.+++. ....+..+ +..+.++|... +
T Consensus 355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g-----~v~~t~~~g~~~Vsvid~~~~~~~~~~~ 429 (567)
T 1qks_A 355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG-----PVWATSHMGDDSVALIGTDPEGHPDNAW 429 (567)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE-----EEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCC-----cEEEeCCCCCCeEEEecCCCCCCccccC
Confidence 3445555789999999999998877765 2 2222222 344321 11122222 35677777765 6
Q ss_pred CceEEeecCCCCeeEEEEeCCe--EEEEEC-------CCeEEEEeCCCC-----Cc--cccC---------CCCcEE--E
Q 008939 476 SPLVAHRVHTEPLSGLIFTQES--VLTVCR-------EGHIKIWMRPGV-----AE--SQSS---------SSETVL--S 528 (548)
Q Consensus 476 ~~~~~~~~h~~~V~~l~fspd~--l~t~s~-------Dg~I~iW~~~~~-----~~--~~~~---------~~~~v~--~ 528 (548)
+.+..+......-..|.++|++ |..... ...|.++|+.+. .. .... ....+. .
T Consensus 430 kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (567)
T 1qks_A 430 KILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGE 509 (567)
T ss_dssp SEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEE
T ss_pred EEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeee
Confidence 6777777554443457789984 444442 469999998755 21 1110 112233 8
Q ss_pred ecCCCCceEeee
Q 008939 529 TSSKDKPLLSSK 540 (548)
Q Consensus 529 ~s~d~~~l~s~~ 540 (548)
+++||+.|..+.
T Consensus 510 ~~~~G~~~~~s~ 521 (567)
T 1qks_A 510 FNKDGTEVWFSV 521 (567)
T ss_dssp ECTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 899999877763
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=7.6e-10 Score=106.64 Aligned_cols=238 Identities=9% Similarity=-0.007 Sum_probs=161.0
Q ss_pred CCCCCceeEEeCCCCCEEEEecC-CeEEEEEccCCCCCCeEEEec--CCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVG-DAIFISDLNSQDKDPIKSIHF--SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~-d~v~vwd~~~~~~~~i~~~~~--~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
.....+..+.++++|.+.+.... +.|.+||.. +. +..+.. ....+..++++++ +.++++...++.|..||
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~---~~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR---IKEFEVPTPDAKVMCLIVSSL---GDIWFTENGANKIGKLS 89 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC---EEEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEEC
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc---eEEEECCCCCCcceeEEECCC---CCEEEEecCCCeEEEEC
Confidence 34567788999999998887755 499999987 32 333322 2357889999887 65555544578899988
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
... + ... .. .. .....+.++++.+++. ++++...++.|..||.. +... .+.
T Consensus 90 ~~g------~-~~~-~~--~~--~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~--g~~~-~~~------------- 140 (300)
T 2qc5_A 90 KKG------G-FTE-YP--LP--QPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD--GTIY-EYD------------- 140 (300)
T ss_dssp TTS------C-EEE-EE--CS--STTCCEEEEEECSTTC-EEEEETTTTEEEEECTT--SCEE-EEE-------------
T ss_pred CCC------C-eEE-ec--CC--CCCCCCccceECCCCC-EEEEccCCCeEEEECCC--CCEE-Ecc-------------
Confidence 652 1 110 11 00 0235688999999887 67766667889988865 2110 000
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe-eeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG-GKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
+......+.++++.++++++++...++.|.+||. +++.... .......+..+++.++|+++++....+
T Consensus 141 ----------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 209 (300)
T 2qc5_A 141 ----------LPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGN 209 (300)
T ss_dssp ----------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred ----------CCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCC
Confidence 0011256889999999996666656789999998 5554432 223445688999999998777776778
Q ss_pred eEEEEECCCceeEEe-ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 364 LVQVWSMEDRKVVAW-GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
.|.+||. +++.... +..+...+.++++++ +| +++++...++.|..||..
T Consensus 210 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-------~g------~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 210 KIGRITT-TGEISEYDIPTPNARPHAITAGK-------NS------EIWFTEWGANQIGRITND 259 (300)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECS-------TT------CEEEEETTTTEEEEECTT
T ss_pred EEEEEcC-CCcEEEEECCCCCCCceEEEECC-------CC------CEEEeccCCCeEEEECCC
Confidence 8999998 4544332 334567789999998 88 566666667899999983
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.43 E-value=3.3e-10 Score=109.14 Aligned_cols=200 Identities=9% Similarity=0.025 Sum_probs=137.7
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
...+.+++++++ +..+++...++.|.+||... .... ... . .....+.++++.+++. ++++...+
T Consensus 14 ~~~~~~i~~d~~---g~l~v~~~~~~~v~~~d~~~-------~~~~-~~~-~---~~~~~~~~i~~~~~g~-l~v~~~~~ 77 (299)
T 2z2n_A 14 DTGPYGITVSDK---GKVWITQHKANMISCINLDG-------KITE-YPL-P---TPDAKVMCLTISSDGE-VWFTENAA 77 (299)
T ss_dssp SCCEEEEEECTT---SCEEEEETTTTEEEEECTTC-------CEEE-EEC-S---STTCCEEEEEECTTSC-EEEEETTT
T ss_pred CCCccceEECCC---CCEEEEecCCCcEEEEcCCC-------CeEE-ecC-C---cccCceeeEEECCCCC-EEEeCCCC
Confidence 357889999987 65555444478899998652 1111 000 0 1246788999999988 67766668
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
+.|+.||... .. ..+. .......+.+++++++++++++...++.|.+||. +++
T Consensus 78 ~~i~~~~~~g--~~-~~~~-----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~ 130 (299)
T 2z2n_A 78 NKIGRITKKG--II-KEYT-----------------------LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK 130 (299)
T ss_dssp TEEEEECTTS--CE-EEEE-----------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred CeEEEECCCC--cE-EEEe-----------------------CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence 8899998652 10 0000 0011256889999999988777777889999998 555
Q ss_pred EEEe-eeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEe-ccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 333 LICG-GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW-GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 333 ~~~~-~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
.... .......+..+++.++|+++++...++.|.+||. +++.... +..+...+.++++++ +| .+
T Consensus 131 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-------~g------~l 196 (299)
T 2z2n_A 131 IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN-------DD------AL 196 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-------TS------SE
T ss_pred EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC-------CC------CE
Confidence 4322 2334457899999999988877777889999999 6655433 334556788999998 88 56
Q ss_pred EEEEeCCCeEEEEECCCCeE
Q 008939 411 FGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 411 l~s~~~Dg~i~lwd~~~~~~ 430 (548)
+++...++.|.+||. +++.
T Consensus 197 ~v~~~~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 197 WFVEIIGNKIGRITT-SGEI 215 (299)
T ss_dssp EEEETTTTEEEEECT-TCCE
T ss_pred EEEccCCceEEEECC-CCcE
Confidence 666666889999998 6553
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=1.9e-11 Score=134.25 Aligned_cols=195 Identities=12% Similarity=0.116 Sum_probs=128.0
Q ss_pred CceEEEecCCCCCCceEEEEEcC-C----cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEE
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNS-G----DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVG 249 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~d-g----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 249 (548)
.+..++|+|+ +.+|+.+..+ | +|++||+.+. +.+.... +...+..++|+|| + .|+.+
T Consensus 164 ~~~~~~~SPD---G~~la~~~~~~G~e~~~i~v~dl~tg-----~~~~~~~--------~~~~~~~~~wspD-~-~l~~~ 225 (741)
T 1yr2_A 164 ALDAWAASDD---GRLLAYSVQDGGSDWRTVKFVGVADG-----KPLADEL--------KWVKFSGLAWLGN-D-ALLYS 225 (741)
T ss_dssp EEEEEEECTT---SSEEEEEEEETTCSEEEEEEEETTTC-----CEEEEEE--------EEEESCCCEESTT-S-EEEEE
T ss_pred EEEeEEECCC---CCEEEEEEcCCCCceEEEEEEECCCC-----CCCCccC--------CCceeccEEEECC-C-EEEEE
Confidence 4678899999 7788877665 3 5999999862 2211111 1223467899999 7 66666
Q ss_pred eCCCc--------------EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee--cCCCeEEEEECCCCCE
Q 008939 250 HADGN--------------LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI--CQGSINSIAFSTDGTY 313 (548)
Q Consensus 250 ~~dg~--------------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~g~~ 313 (548)
..|+. |++|++.+... .....+.. +...+..+.|+|||++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~------------------------~~~lv~~~~~~~~~~~~~~~SpDG~~ 281 (741)
T 1yr2_A 226 RFAEPKEGQAFQALNYNQTVWLHRLGTPQS------------------------ADQPVFATPELPKRGHGASVSSDGRW 281 (741)
T ss_dssp ECCCC--------CCCCCEEEEEETTSCGG------------------------GCEEEECCTTCTTCEEEEEECTTSCE
T ss_pred EecCcccccccccCCCCCEEEEEECCCCch------------------------hCEEEeccCCCCeEEEEEEECCCCCE
Confidence 65543 88888765210 00111111 2235789999999999
Q ss_pred EEEEECCC-----eEEEEeCCCC--eEEEeeeecCCceEEEEEccCCCEEEEEeCC----CeEEEEECCCc--eeEEecc
Q 008939 314 LATVGRDG-----YLRVFDYSKE--QLICGGKSYYGALLCCAWSMDGKYILTGGED----DLVQVWSMEDR--KVVAWGE 380 (548)
Q Consensus 314 l~s~~~dg-----~v~vwd~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d----g~I~vwd~~~~--~~~~~~~ 380 (548)
|+..+.++ .|.+||+.++ +....+..+...+... ++|+|+.|+..+.+ +.|.+||++++ +....+.
T Consensus 282 l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 282 VVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp EEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred EEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence 98877554 8999999876 3133444455555555 35899988887764 45999999874 3444445
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
.+...+..+.|. ++ .++++...|+..+||.+.
T Consensus 361 ~~~~~l~~~~~~--------~~------~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 361 ESKDNLESVGIA--------GN------RLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp CCSSEEEEEEEE--------BT------EEEEEEEETTEEEEEEEE
T ss_pred CCCCeEEEEEEE--------CC------EEEEEEEECCEEEEEEEe
Confidence 555566677775 33 588888999988877654
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.43 E-value=4.1e-11 Score=117.99 Aligned_cols=261 Identities=10% Similarity=-0.024 Sum_probs=167.2
Q ss_pred CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccc
Q 008939 197 SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQ 276 (548)
Q Consensus 197 dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 276 (548)
++.|.+||.++. ++...................+.+.. +. ++++...++.|.+||..+.
T Consensus 16 ~~~l~~~d~~t~------~~~~~i~~~~n~~~lg~~~~~i~~~~-~~-lyv~~~~~~~v~viD~~t~------------- 74 (328)
T 3dsm_A 16 NATLSYYDPATC------EVENEVFYRANGFKLGDVAQSMVIRD-GI-GWIVVNNSHVIFAIDINTF------------- 74 (328)
T ss_dssp CBEEEEEETTTT------EEECSHHHHHHSSCCBSCEEEEEEET-TE-EEEEEGGGTEEEEEETTTC-------------
T ss_pred CceEEEEECCCC------EEhhhhHhhhcCcccCccceEEEEEC-CE-EEEEEcCCCEEEEEECccc-------------
Confidence 678999998762 11111100000111234567787743 33 6777777899999999862
Q ss_pred ceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecC-----CceEEEEEcc
Q 008939 277 TQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-----GALLCCAWSM 351 (548)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-----~~v~~l~~sp 351 (548)
+.+..+. .......++++++++++++...++.|.+||..+++.+..+.... .....+++ .
T Consensus 75 -------------~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~ 139 (328)
T 3dsm_A 75 -------------KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y 139 (328)
T ss_dssp -------------CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E
T ss_pred -------------EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E
Confidence 1222222 22568899999988544444378999999999998877665432 14556777 4
Q ss_pred CCCEEEEEe-CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC----------CeE
Q 008939 352 DGKYILTGG-EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD----------TRL 420 (548)
Q Consensus 352 dg~~l~sgs-~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D----------g~i 420 (548)
+++++++.. .++.|.+||+++++.+..+.. ......++++| +| ++++++..+ +.|
T Consensus 140 ~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~-------dG------~l~v~~~~~~~~~~~~~~~~~v 205 (328)
T 3dsm_A 140 GKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDK-------YN------KMWTITDGGYEGSPYGYEAPSL 205 (328)
T ss_dssp TTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECT-------TS------EEEEEBCCBCTTCSSCBCCCEE
T ss_pred CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcC-------CC------CEEEEECCCccCCccccCCceE
Confidence 444444443 488999999999988877763 33456889999 88 666665544 789
Q ss_pred EEEECCCCeEEeeeecC--CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEE--eecCCCCeeEEEEeCC
Q 008939 421 LLWDLEMDEIVVPLRRG--PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA--HRVHTEPLSGLIFTQE 496 (548)
Q Consensus 421 ~lwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~--~~~h~~~V~~l~fspd 496 (548)
.+||..+++....+... .....+++++++. .+.+.. ..+..+|..+.+.... +..+......|+++|+
T Consensus 206 ~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~------~lyv~~--~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 206 YRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD------TLYWIN--NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN 277 (328)
T ss_dssp EEEETTTTEEEEEEECCTTCCCEEEEECTTSC------EEEEES--SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT
T ss_pred EEEECCCCeEEEEEecCCCCCceeEEEecCCC------EEEEEc--cEEEEEECCCCceeeeeeecCCCCceEEEEEcCC
Confidence 99999999988777642 2455677777652 221111 1566677766554211 1112456889999984
Q ss_pred -e--EEEE----ECCCeEEEEeCCCC
Q 008939 497 -S--VLTV----CREGHIKIWMRPGV 515 (548)
Q Consensus 497 -~--l~t~----s~Dg~I~iW~~~~~ 515 (548)
. +++. ..++.|.+||..+.
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~g~ 303 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQGK 303 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTTCC
T ss_pred CCeEEEEcccccccCCEEEEECCCCC
Confidence 3 4555 57899999998743
No 199
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.42 E-value=3.6e-11 Score=119.14 Aligned_cols=259 Identities=17% Similarity=0.144 Sum_probs=174.3
Q ss_pred eEEeCCCCCEEEEec-----------CCeEEEEEccCCCCCCeEEEecCC-------CCceEEEecCCCCCCceEEEEEc
Q 008939 135 NTNFDGKGTYIIFNV-----------GDAIFISDLNSQDKDPIKSIHFSN-------SNPVCHAFDQDAKDGHDLLIGLN 196 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~-----------~d~v~vwd~~~~~~~~i~~~~~~~-------~~~~~~~~~p~~~~~~~l~~g~~ 196 (548)
.++++|||+++.++. .+.|.+||..+.. .+..+.... ..+..++|+|+ +++|+++..
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~--v~~~I~v~~g~r~~~g~~P~~~a~spD---Gk~lyVan~ 156 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPRFLVGTYPWMTSLTPD---GKTLLFYQF 156 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGEEECTT---SSEEEEEEC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe--EEEEEECCCccccccCCCCceEEEcCC---CCEEEEEEc
Confidence 499999999887754 2489999999844 788876542 36889999999 788888864
Q ss_pred --CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccc
Q 008939 197 --SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 197 --dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 274 (548)
++.|.++|+.+ .++..... ... |..+.|.+...|++.+.||.+.+.++...+.......
T Consensus 157 ~~~~~VsVID~~t------~~vv~tI~--------v~g--~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~--- 217 (386)
T 3sjl_D 157 SPAPAVGVVDLEG------KAFKRMLD--------VPD--CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT--- 217 (386)
T ss_dssp SSSCEEEEEETTT------TEEEEEEE--------CCS--EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC---
T ss_pred CCCCeEEEEECCC------CcEEEEEE--------CCC--cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec---
Confidence 68899999987 33333322 111 1233455544788888999999999876333211000
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeE-EEEEC-CCCCEEEEEECCCeEEEEeCCCCe--EEEeee----------ec
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSIN-SIAFS-TDGTYLATVGRDGYLRVFDYSKEQ--LICGGK----------SY 340 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s-p~g~~l~s~~~dg~v~vwd~~~~~--~~~~~~----------~~ 340 (548)
..+. .....+. ...|. ++|++++ .+.+|.|.+.|+..+. .+..+. -.
T Consensus 218 --~~~~----------------~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 218 --EVFH----------------PEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp --CCCS----------------CTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred --ceec----------------cccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc
Confidence 0000 0001121 23564 6776544 6668999999997654 332222 01
Q ss_pred CCceEEEEEccCCCEEEEEeC----------CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 341 YGALLCCAWSMDGKYILTGGE----------DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 341 ~~~v~~l~~spdg~~l~sgs~----------dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
.+....++++++++.|++... .+.|.++|+.+++.+..+.. ...+..|+|+| |+. ..+
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~-------D~~----~~l 346 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQ-------DEK----PLL 346 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECS-------SSS----CEE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECC-------CCC----eEE
Confidence 123455788999998887643 25799999999999888762 34678999999 881 023
Q ss_pred EEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCC
Q 008939 411 FGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTG 448 (548)
Q Consensus 411 l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 448 (548)
+++...++.|.++|..+++.+.++........+.++++
T Consensus 347 y~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 347 YALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred EEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 44456699999999999999999988666666666654
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.42 E-value=2.7e-11 Score=116.09 Aligned_cols=191 Identities=12% Similarity=0.078 Sum_probs=143.3
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccC-cceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNN-SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 266 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~ 266 (548)
++.|++++.++.|++||.++ ++.+..... +. ..+.++.+.|+++ +|+ +.++.|+.||. + ++.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~t-----G~~~w~~~~-------~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~-G~~ 67 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDT-----KEIVWEYPL-------EKGWECNSVAATKAGE-ILF--SYSKGAKMITR-D-GRE 67 (276)
T ss_dssp CEEEEECTTCSEEEEEETTT-----TEEEEEEEC-------CTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-T-SCE
T ss_pred CcEEEeeCCCCEEEEEECCC-----CeEEEEeCC-------CccCCCcCeEECCCCC-EEE--eCCCCEEEECC-C-CCE
Confidence 67899999999999999765 343332211 22 4678999999998 777 45678999987 3 322
Q ss_pred CCCcccccccceeeeecCCCCCCCCeeEeeec-CCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCCCeEEEeeee-----
Q 008939 267 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGSINSIAFSTDGTYLATVGR-DGYLRVFDYSKEQLICGGKS----- 339 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~~~~~~~~~~~~----- 339 (548)
+..+..+ ...+.++.+.++|++|++.+. ++.|..+|. +++.+..+..
T Consensus 68 -------------------------~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~ 121 (276)
T 3no2_A 68 -------------------------LWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE 121 (276)
T ss_dssp -------------------------EEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS
T ss_pred -------------------------EEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC
Confidence 2233322 246788999999999999887 778888886 6777766542
Q ss_pred -cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 340 -YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 340 -~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
+......+++.++|++|++...++.|..||.+ ++.+..+..+ ..+..+.+.+ +| ..++++..++
T Consensus 122 ~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~-------~g------~~~v~~~~~~ 186 (276)
T 3no2_A 122 RPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLD-------NG------DCLVACGDAH 186 (276)
T ss_dssp SGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECT-------TS------CEEEECBTTS
T ss_pred cccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcC-------CC------CEEEEeCCCC
Confidence 11234556789999999999999999999998 9888887754 4556677787 88 6788888888
Q ss_pred eEEEEECCCCeEEeeeec
Q 008939 419 RLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 419 ~i~lwd~~~~~~~~~~~~ 436 (548)
.|..+|..+++.+..+..
T Consensus 187 ~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 187 CFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp EEEEECTTTCCEEEEEEG
T ss_pred eEEEEeCcCCcEEEEecC
Confidence 999999999999988864
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.40 E-value=6.2e-10 Score=111.35 Aligned_cols=242 Identities=14% Similarity=0.029 Sum_probs=163.2
Q ss_pred eEEeCCCCCEEEEec-----------CCeEEEEEccCCCCCCeEEEecC-------CCCceEEEecCCCCCCceEEEEEc
Q 008939 135 NTNFDGKGTYIIFNV-----------GDAIFISDLNSQDKDPIKSIHFS-------NSNPVCHAFDQDAKDGHDLLIGLN 196 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~-----------~d~v~vwd~~~~~~~~i~~~~~~-------~~~~~~~~~~p~~~~~~~l~~g~~ 196 (548)
.+.++|||+++.++. ++.|.+||..+. +.+..+... ...+..++|+|+ +++|+++..
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--~~~~~i~~~~~~~~~~g~~p~~~~~spD---G~~l~v~n~ 144 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFDVGPYSWMNANTPN---NADLLFFQF 144 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--cEEEEEECCCccccccCCCccceEECCC---CCEEEEEec
Confidence 799999999998864 348999999874 367666543 245778999999 788998874
Q ss_pred --CCcEEEEEeeecccccccceeee-eeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 197 --SGDVYSVSLRQQLQDVGKKLVGA-HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 197 --dg~I~iwdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
++.|.++| .+ .++... .. .. .|+.+.|++...+++.+.||.+.++|. .. ........
T Consensus 145 ~~~~~v~viD-~t------~~~~~~~i~-------~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g-~~~~~~~~- 204 (373)
T 2mad_H 145 AAGPAVGLVV-QG------GSSDDQLLS-------SP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AG-GAAGAGLV- 204 (373)
T ss_pred CCCCeEEEEE-CC------CCEEeEEcC-------CC---ceEEEEeCCCceEEEEcCCCCEEEEEC-CC-cEEEEEec-
Confidence 47899999 76 222222 11 01 235677887767888889999999999 52 21100000
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCC-eEEEEECCCCCEEEEEECCCeEEEEeCCCCe--EEEeeee----------c
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGS-INSIAFSTDGTYLATVGRDGYLRVFDYSKEQ--LICGGKS----------Y 340 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~--~~~~~~~----------~ 340 (548)
.+. + ....+ .....|.+++..++..+..+.+.+.|+..+. .+..+.. .
T Consensus 205 ----------------~~~--~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~ 265 (373)
T 2mad_H 205 ----------------GAM--L-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWR 265 (373)
T ss_pred ----------------ccc--c-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccccee
Confidence 000 0 00011 1234566665555555578899999997553 2222211 1
Q ss_pred CCceEEEEEccCCCEEEEEeC----------CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeE-
Q 008939 341 YGALLCCAWSMDGKYILTGGE----------DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY- 409 (548)
Q Consensus 341 ~~~v~~l~~spdg~~l~sgs~----------dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~- 409 (548)
......++++||++.|++... .+.|.++|+.+++.+.++. -.....+++|+| || +
T Consensus 266 p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~-------Dg------~~ 331 (373)
T 2mad_H 266 PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ-------DG------GP 331 (373)
T ss_pred cCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECC-------CC------Ce
Confidence 123445789999998887653 3579999999999988886 344688999999 98 5
Q ss_pred EEEEEe-CCCeEEEEECCCCeEEeee
Q 008939 410 RFGSVG-QDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 410 ~l~s~~-~Dg~i~lwd~~~~~~~~~~ 434 (548)
+++++. .++.|.+||+.+++.+..+
T Consensus 332 ~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 332 DLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEEcCCCCeEEEEECCCCCEEeee
Confidence 666666 5899999999999988773
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.40 E-value=2.5e-11 Score=133.23 Aligned_cols=247 Identities=14% Similarity=0.066 Sum_probs=156.5
Q ss_pred CCCceeEEeCCCCCEEEEecCC------eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc----
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD------AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD---- 199 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d------~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~---- 199 (548)
...+..++|+|||++|++...+ .|++||+.++. .+.. .........++|+|+ + .|+.+..++.
T Consensus 162 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~--~~~~-~~~~~~~~~~~wspD-~---~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 162 ATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK--PLAD-ELKWVKFSGLAWLGN-D---ALLYSRFAEPKEGQ 234 (741)
T ss_dssp -EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC--EEEE-EEEEEESCCCEESTT-S---EEEEEECCCC----
T ss_pred CEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--CCCc-cCCCceeccEEEECC-C---EEEEEEecCccccc
Confidence 3467789999999999986432 69999999865 3332 222223357889997 4 4666665543
Q ss_pred ----------EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCC
Q 008939 200 ----------VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-----GNLYVYEKSKDG 264 (548)
Q Consensus 200 ----------I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d-----g~v~vwd~~~~~ 264 (548)
|++|++.+.. ....++. .. ..+...+..+.|+|+|+ +|+....+ ..|++||+....
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~--~~~~lv~----~~--~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~ 305 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQ--SADQPVF----AT--PELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGK 305 (741)
T ss_dssp ----CCCCCEEEEEETTSCG--GGCEEEE----CC--TTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTE
T ss_pred ccccCCCCCEEEEEECCCCc--hhCEEEe----cc--CCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCC
Confidence 8899886521 1111111 11 11234588999999999 66655543 389999987520
Q ss_pred CCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC----CeEEEEeCCCC--eEEEeee
Q 008939 265 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD----GYLRVFDYSKE--QLICGGK 338 (548)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d----g~v~vwd~~~~--~~~~~~~ 338 (548)
. .....+..+...+.... +|+++.|+..+.+ +.|.+||+.++ +....+.
T Consensus 306 ~------------------------~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 306 I------------------------GPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp E------------------------CCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred C------------------------cccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence 0 00122222333444443 4888888887764 45999999874 3343444
Q ss_pred ecCCceEEEEEccCCCEEEEEeCCCeEEEEECC-CceeEEeccC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEE---
Q 008939 339 SYYGALLCCAWSMDGKYILTGGEDDLVQVWSME-DRKVVAWGEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS--- 413 (548)
Q Consensus 339 ~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~-~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s--- 413 (548)
.+...+..+.|. ++.++++...|+..+||.++ +++.+..+.. +...|..+.++| |+. .++++
T Consensus 361 ~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~-------d~~-----~l~~~~ss 427 (741)
T 1yr2_A 361 ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRP-------GDR-----HAYLSFSS 427 (741)
T ss_dssp CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCB-------TCS-----CEEEEEEE
T ss_pred CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCC-------CCC-----EEEEEEcC
Confidence 455556678887 56678888889987777654 4555666654 467788999998 772 12222
Q ss_pred EeCCCeEEEEECCCCeE
Q 008939 414 VGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 414 ~~~Dg~i~lwd~~~~~~ 430 (548)
....+.|.+||+.+++.
T Consensus 428 ~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 428 FTQPATVLALDPATAKT 444 (741)
T ss_dssp TTEEEEEEEEETTTTEE
T ss_pred CCCCCEEEEEECCCCcE
Confidence 23458899999998874
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.39 E-value=3.2e-10 Score=115.00 Aligned_cols=241 Identities=9% Similarity=0.053 Sum_probs=158.1
Q ss_pred CCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC--cEEEEEeee
Q 008939 131 TSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG--DVYSVSLRQ 207 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg--~I~iwdl~~ 207 (548)
..+..++|+++|.++++...+ .|++||++++ .+..+......+. ++|+|+ +..|+++..++ .|++|+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g---~~~~~~~~~~~~~-ia~~~~---g~~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN---KVTTVHPGFKGGK-PAVTKD---KQRVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT---EEEEEEETCCBCB-CEECTT---SSEEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC---EEEEeeccCCCCc-eeEecC---CCcEEEEecCCCceEEEEEcCC
Confidence 356789999999977776665 9999999863 3434433334445 999998 77888888866 688888654
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
. ........... .....+.+++++|++. .|+++..++.|+.||...... ..+....
T Consensus 204 ~-----~~~~~~g~~~~---~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~~~--~~~~~~~------------- 259 (409)
T 3hrp_A 204 G-----WAPTRIGQLGS---TFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQEV--TLIKQLE------------- 259 (409)
T ss_dssp T-----TCEEEEEECCT---TSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTCCE--EEEEECC-------------
T ss_pred C-----ceeEEeeeccc---hhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCCCE--EEEeccc-------------
Confidence 1 11111000000 0245678899999555 455577788999999875210 0000000
Q ss_pred CCCCeeEeeecCCC--eEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeec---------------CCceEEEEE
Q 008939 288 KSNPIARWHICQGS--INSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSY---------------YGALLCCAW 349 (548)
Q Consensus 288 ~~~~~~~~~~h~~~--v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~---------------~~~v~~l~~ 349 (548)
...+... ...++|+|+ +.++++-..++.|+.|+.... +..+.++ ......+++
T Consensus 260 -------~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~ 330 (409)
T 3hrp_A 260 -------LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTV 330 (409)
T ss_dssp -------CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEE
T ss_pred -------ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEE
Confidence 0001111 238999995 555566567789999998643 2222222 235789999
Q ss_pred ccCCCEEEEEe-CCCeEEEEECCCceeEEeccCC---------------CCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 008939 350 SMDGKYILTGG-EDDLVQVWSMEDRKVVAWGEGH---------------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413 (548)
Q Consensus 350 spdg~~l~sgs-~dg~I~vwd~~~~~~~~~~~~h---------------~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s 413 (548)
+|+|+++++-. .++.|+.||+.+++.. .+.++ -.....|+++| +| .++++
T Consensus 331 d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~-------~g------~lyVa 396 (409)
T 3hrp_A 331 DEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDG-------EG------GYWIA 396 (409)
T ss_dssp CTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECS-------SS------EEEEE
T ss_pred eCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcC-------CC------CEEEE
Confidence 99999888887 8999999998877643 33333 24678999998 88 78888
Q ss_pred EeCCCeEEEEEC
Q 008939 414 VGQDTRLLLWDL 425 (548)
Q Consensus 414 ~~~Dg~i~lwd~ 425 (548)
-..++.|+.+++
T Consensus 397 d~~n~~Ir~i~~ 408 (409)
T 3hrp_A 397 EAWGKAIRKYAV 408 (409)
T ss_dssp ESTTCEEEEEEE
T ss_pred ECCCCeEEEEEe
Confidence 888888888775
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.38 E-value=1e-09 Score=106.32 Aligned_cols=216 Identities=13% Similarity=0.109 Sum_probs=143.4
Q ss_pred eeEEeCCCCCEEEE-ecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 134 TNTNFDGKGTYIIF-NVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 134 ~~~~~~~~g~~l~~-~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
....|++++..+.+ ...+ .|+.||..++. +..+. .+..+.+++++++ +. |+++. ++.|++||.++.
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~~~-~~~~~~~i~~~~d---G~-l~v~~-~~~l~~~d~~~g--- 83 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ---VQRVT-MDAPVSSVALRQS---GG-YVATI-GTKFCALNWKEQ--- 83 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCC---EEEEE-CSSCEEEEEEBTT---SS-EEEEE-TTEEEEEETTTT---
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCc---EEEEe-CCCceEEEEECCC---CC-EEEEE-CCeEEEEECCCC---
Confidence 46788886555554 4444 99999998643 33443 4568999999998 66 55555 668999997641
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC---------CCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA---------DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~---------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
++....... .. .....++++++.|++. ++++... ...-.||.++..+.
T Consensus 84 ---~~~~~~~~~-~~-~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~----------------- 140 (297)
T 3g4e_A 84 ---SAVVLATVD-ND-KKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHH----------------- 140 (297)
T ss_dssp ---EEEEEEECC-TT-CSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSC-----------------
T ss_pred ---cEEEEEecC-CC-CCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCC-----------------
Confidence 111111100 01 1235689999999998 5554322 12345555543221
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeC--CCCeE-----EEeeeecCCceEEEEEccCCC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDY--SKEQL-----ICGGKSYYGALLCCAWSMDGK 354 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~--~~~~~-----~~~~~~~~~~v~~l~~spdg~ 354 (548)
+..+..+....+.++|+|+++.|+.+ +.++.|.+||+ .++.+ ...+..+.+....+++.++|+
T Consensus 141 ---------~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~ 211 (297)
T 3g4e_A 141 ---------VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK 211 (297)
T ss_dssp ---------EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred ---------EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC
Confidence 11111122456789999999877554 45788999987 45543 222333345678999999999
Q ss_pred EEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEe-c
Q 008939 355 YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD-S 393 (548)
Q Consensus 355 ~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~-p 393 (548)
+.++...++.|.+||.++++.+..+..+...+++++|. |
T Consensus 212 lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~ 251 (297)
T 3g4e_A 212 LWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGK 251 (297)
T ss_dssp EEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESG
T ss_pred EEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCC
Confidence 88888788899999999999988888777889999998 7
No 205
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.37 E-value=1.6e-11 Score=122.14 Aligned_cols=173 Identities=11% Similarity=0.137 Sum_probs=130.9
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCC---------CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQD---------KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~---------~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
++..+++++...++++++.+.+.||+++... .++...+. .+. ++.++| + +..|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d---~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--H---GDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--E---TTEEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--C---CCEEEEE-cCCcEEE
Confidence 5678999999999999999999999976533 23434444 455 999999 5 7789988 8899999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
||+++... .... . .+...+.++.+.+. .++++..||.|++||+.....
T Consensus 111 ~dv~sl~~--~~~~---~-------~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~----------------- 158 (388)
T 1xip_A 111 LDLEELSE--FRTV---T-------SFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKST----------------- 158 (388)
T ss_dssp EESSSTTC--EEEE---E-------ECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCE-----------------
T ss_pred EEchhhhc--cCcc---c-------eeecceeeEEecCC---CEEEEECCCCEEEEEccCCcc-----------------
Confidence 99987421 1111 1 14556788877755 388889999999999985211
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE--EEee------e---ecCCceEEEEEcc
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL--ICGG------K---SYYGALLCCAWSM 351 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~--~~~~------~---~~~~~v~~l~~sp 351 (548)
. . +...|.|++|||+| ++.+..||.+++|+...+++ ...+ . +|...|.+|.|.+
T Consensus 159 ---------~-~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~ 223 (388)
T 1xip_A 159 ---------K-Q---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS 223 (388)
T ss_dssp ---------E-E---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred ---------c-c---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec
Confidence 0 0 12579999999999 67899999999999987775 4445 2 3678899999999
Q ss_pred CCCEEEEE
Q 008939 352 DGKYILTG 359 (548)
Q Consensus 352 dg~~l~sg 359 (548)
++++|++=
T Consensus 224 ~~~flv~y 231 (388)
T 1xip_A 224 PQDFLAVF 231 (388)
T ss_dssp SSEEEEEE
T ss_pred CCeEEEEE
Confidence 99988873
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.36 E-value=5.1e-10 Score=108.85 Aligned_cols=245 Identities=14% Similarity=0.127 Sum_probs=157.3
Q ss_pred CCCCceEEEecCCCCCCceEEE-------EEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC-CC
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLI-------GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG-GD 243 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~-------g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~-~~ 243 (548)
.-..+.+++|+++ +.++++ +..++.|++||..+. + ...... +....+...+.+++++++ +.
T Consensus 16 ~~~~~~~~~~~~~---g~l~~~~~~~~~~~~~~~~i~~~d~~~g-----~-~~~~~~--~~~~~~~~~~~~i~~~~~~g~ 84 (314)
T 1pjx_A 16 DIPGAEGPVFDKN---GDFYIVAPEVEVNGKPAGEILRIDLKTG-----K-KTVICK--PEVNGYGGIPAGCQCDRDANQ 84 (314)
T ss_dssp CCTTCEEEEECTT---SCEEEEETTCEETTEECCEEEEECTTTC-----C-EEEEEC--CEETTEECCEEEEEECSSSSE
T ss_pred cCCCccCceECCC---CCEEEEEeccccCCCCCCEEEEEeCCCC-----c-EEEEEe--cccCCCCCCCceEEEecCCCc
Confidence 4457789999977 655665 477889999986541 1 111000 000013456889999999 65
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCC-cccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC--
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSS-FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-- 320 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-- 320 (548)
|+++..+..|.+||.. +..... ..... ..+...+.+++++++|+++++...+
T Consensus 85 --l~v~~~~~~l~~~d~~--g~~~~~~~~~~~---------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~ 139 (314)
T 1pjx_A 85 --LFVADMRLGLLVVQTD--GTFEEIAKKDSE---------------------GRRMQGCNDCAFDYEGNLWITAPAGEV 139 (314)
T ss_dssp --EEEEETTTEEEEEETT--SCEEECCSBCTT---------------------SCBCBCCCEEEECTTSCEEEEECBCBC
T ss_pred --EEEEECCCCEEEEeCC--CCEEEEEeccCC---------------------CccccCCcCEEECCCCCEEEEecCccc
Confidence 4444444578899876 221110 00000 0011357899999999877776554
Q ss_pred -------------CeEEEEeCCCCeEEEeeeecCCceEEEEEc----cCCCEEEEE-eCCCeEEEEECC-Cce-----eE
Q 008939 321 -------------GYLRVFDYSKEQLICGGKSYYGALLCCAWS----MDGKYILTG-GEDDLVQVWSME-DRK-----VV 376 (548)
Q Consensus 321 -------------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~s----pdg~~l~sg-s~dg~I~vwd~~-~~~-----~~ 376 (548)
+.|..||.. ++..... .+......++|+ |+++.|+++ ..++.|.+||++ +++ ..
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~ 217 (314)
T 1pjx_A 140 APADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVW 217 (314)
T ss_dssp TTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEE
T ss_pred ccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEE
Confidence 567778776 5544332 233456889999 999765554 567899999986 443 33
Q ss_pred EeccCCC-CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccC
Q 008939 377 AWGEGHN-SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWD 455 (548)
Q Consensus 377 ~~~~~h~-~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 455 (548)
..+..+. ..+..+++++ +| +++++...++.|.+||..+++.+..+.
T Consensus 218 ~~~~~~~~~~p~~i~~d~-------~G------~l~v~~~~~~~i~~~d~~~g~~~~~~~-------------------- 264 (314)
T 1pjx_A 218 GHIPGTHEGGADGMDFDE-------DN------NLLVANWGSSHIEVFGPDGGQPKMRIR-------------------- 264 (314)
T ss_dssp EECCCCSSCEEEEEEEBT-------TC------CEEEEEETTTEEEEECTTCBSCSEEEE--------------------
T ss_pred EECCCCCCCCCCceEECC-------CC------CEEEEEcCCCEEEEEcCCCCcEeEEEe--------------------
Confidence 3444454 6688999999 88 677777778899999987655432221
Q ss_pred CeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EE-EEECCCeEEEEeCCC
Q 008939 456 NVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VL-TVCREGHIKIWMRPG 514 (548)
Q Consensus 456 ~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~-t~s~Dg~I~iW~~~~ 514 (548)
.+...+.+++|+|++ |+ +...++.|..|++..
T Consensus 265 ---------------------------~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 265 ---------------------------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ---------------------------CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ---------------------------CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 234568999999873 44 445668999999764
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.36 E-value=5.5e-11 Score=118.31 Aligned_cols=171 Identities=10% Similarity=-0.002 Sum_probs=123.4
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc---ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV---GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
.+..+++++. ..++++|+.+ .+.+|++....... .+....... ..+.. |+.|+| ++. +|+++ .
T Consensus 39 ~~nlLais~~---~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~-----~~lp~-V~~l~f--d~~-~L~v~-~ 104 (388)
T 1xip_A 39 SLQNLDISNS---KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWE-----KEIPD-VIFVCF--HGD-QVLVS-T 104 (388)
T ss_dssp CCBCEEEETT---TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEE-----EECTT-EEEEEE--ETT-EEEEE-E
T ss_pred cccEEEEcCC---CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEE-----eeCCC-eeEEEE--CCC-EEEEE-c
Confidence 6888999998 6788888887 55569987532000 000000000 01345 999999 776 88888 8
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~ 331 (548)
++.|++||++.-. .......|+..+.++.+.+. .+++++.||.|.+||+.++
T Consensus 105 ~~~l~v~dv~sl~--------------------------~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 105 RNALYSLDLEELS--------------------------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK 156 (388)
T ss_dssp SSEEEEEESSSTT--------------------------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC
T ss_pred CCcEEEEEchhhh--------------------------ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCC
Confidence 8999999998621 12223445566778777654 3888999999999999988
Q ss_pred eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCcee--EEec------c---CCCCCeEEEEEec
Q 008939 332 QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV--VAWG------E---GHNSWVSGVAFDS 393 (548)
Q Consensus 332 ~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~--~~~~------~---~h~~~V~~v~~~p 393 (548)
+... +...|.|++|+|+| ++.|..||.|++|+.+.++. ..++ . +|...|.+|.|.+
T Consensus 157 ~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~ 223 (388)
T 1xip_A 157 STKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS 223 (388)
T ss_dssp CEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred cccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec
Confidence 7653 34579999999999 68899999999999987775 5555 2 4788999999998
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.31 E-value=2e-09 Score=104.18 Aligned_cols=207 Identities=10% Similarity=0.100 Sum_probs=131.9
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN 254 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~ 254 (548)
-.-+..|+|+. +.++++...++.|+.||.... ... ... ....+.+++++|++. ++++ . +..
T Consensus 14 ~~Egp~w~~~~--~~l~~~d~~~~~i~~~d~~~~------~~~-~~~-------~~~~~~~i~~~~dG~-l~v~-~-~~~ 74 (297)
T 3g4e_A 14 CGESPVWEEVS--NSLLFVDIPAKKVCRWDSFTK------QVQ-RVT-------MDAPVSSVALRQSGG-YVAT-I-GTK 74 (297)
T ss_dssp BEEEEEEETTT--TEEEEEETTTTEEEEEETTTC------CEE-EEE-------CSSCEEEEEEBTTSS-EEEE-E-TTE
T ss_pred cccCCeEECCC--CEEEEEECCCCEEEEEECCCC------cEE-EEe-------CCCceEEEEECCCCC-EEEE-E-CCe
Confidence 44577888862 556677777889999998752 111 111 246789999999998 5444 4 567
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC---------CeEEE
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD---------GYLRV 325 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d---------g~v~v 325 (548)
|++||..+.. .. .+..... .. ....++.++++|+|+++++...+ ..-.+
T Consensus 75 l~~~d~~~g~-~~-~~~~~~~-------------~~-------~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l 132 (297)
T 3g4e_A 75 FCALNWKEQS-AV-VLATVDN-------------DK-------KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGAL 132 (297)
T ss_dssp EEEEETTTTE-EE-EEEECCT-------------TC-------SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEE
T ss_pred EEEEECCCCc-EE-EEEecCC-------------CC-------CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEE
Confidence 9999986521 00 0000000 00 01347889999999976654321 22345
Q ss_pred EeCCC-CeEEEeeeecCCceEEEEEccCCCEEE-EEeCCCeEEEEEC--CCcee-----EEeccCCCCCeEEEEEecCCC
Q 008939 326 FDYSK-EQLICGGKSYYGALLCCAWSMDGKYIL-TGGEDDLVQVWSM--EDRKV-----VAWGEGHNSWVSGVAFDSYWS 396 (548)
Q Consensus 326 wd~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~-sgs~dg~I~vwd~--~~~~~-----~~~~~~h~~~V~~v~~~p~~~ 396 (548)
|.+.. ++... +.......+.++|+||++.|+ +.+.++.|.+||+ .++.. ...+..+......+++++
T Consensus 133 ~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~--- 208 (297)
T 3g4e_A 133 YSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA--- 208 (297)
T ss_dssp EEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT---
T ss_pred EEEECCCCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC---
Confidence 54432 33332 233345578899999998765 4556789999997 44432 333333456788999998
Q ss_pred CCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 397 QPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 397 ~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
+| ++.++...++.|..||..+++.+..+..
T Consensus 209 ----~G------~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 209 ----EG------KLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp ----TS------CEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred ----CC------CEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 88 6777777788999999998887765543
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.31 E-value=1.3e-08 Score=101.77 Aligned_cols=272 Identities=7% Similarity=-0.052 Sum_probs=164.8
Q ss_pred CCCCCEEEEecC---C---eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE----------cCCcEEE
Q 008939 139 DGKGTYIIFNVG---D---AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL----------NSGDVYS 202 (548)
Q Consensus 139 ~~~g~~l~~~~~---d---~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~----------~dg~I~i 202 (548)
.+++.++..... + .|.++|..+.+ .+..+... ..+ .++|+|+ ++.|+++. .++.|.+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~--~~~~i~~g-~~p-~i~~spD---g~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGS--ILGHVNGG-FLP-NPVAAHS---GSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCe--EEEEecCC-CCC-CeEECCC---CCEEEEEeccccccccCCCCCeEEE
Confidence 356665554332 2 78999998754 66666643 345 9999999 77888886 3677999
Q ss_pred EEeeecccccccceeeeeeec-cCCcccCcceEEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCccccccccee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYN-KDGSVNNSRCTSVTWVPGGDGAFVVGHA--DGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~~p~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
||..+. +........ ............+.|+|+++ +|+++.. ++.|.++| .+. +.
T Consensus 102 iD~~t~------~~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~viD-~t~-~~------------- 159 (373)
T 2mad_H 102 FDPVTF------LPIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV-QGG-SS------------- 159 (373)
T ss_pred EECCCC------cEEEEEECCCccccccCCCccceEECCCCC-EEEEEecCCCCeEEEEE-CCC-CE-------------
Confidence 998751 122222111 00000112356899999999 6776653 57899999 752 21
Q ss_pred eeecCCCCCCCCeeE-eeecCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCeEEEeee-----ecCCc-eEEEEEcc
Q 008939 280 SVAHPRYSKSNPIAR-WHICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQLICGGK-----SYYGA-LLCCAWSM 351 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~~~~~~~~~-----~~~~~-v~~l~~sp 351 (548)
+.. +.. . .++.+.|++ +.+++.+.||.+.++|. +++.+.... ....+ .....+.+
T Consensus 160 ------------~~~~i~~--~--~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 160 ------------DDQLLSS--P--TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred ------------EeEEcCC--C--ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence 111 110 1 124445554 45566778999999999 877663322 11112 12345667
Q ss_pred CCCEEEEEeCCCeEEEEECCCce--eEEeccCC----------CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC---
Q 008939 352 DGKYILTGGEDDLVQVWSMEDRK--VVAWGEGH----------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ--- 416 (548)
Q Consensus 352 dg~~l~sgs~dg~I~vwd~~~~~--~~~~~~~h----------~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~--- 416 (548)
++..++..+.++.+.+.|+.... .+..+.-. ......+.++| |+ .++.....
T Consensus 223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-------d~------~~lyV~~~~~~ 289 (373)
T 2mad_H 223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-------SS------DGIYLLTSEQS 289 (373)
T ss_pred cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-------CC------CEEEEEeccCC
Confidence 66655544577899999997652 22332211 12233467777 76 33433322
Q ss_pred -------CCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCee
Q 008939 417 -------DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLS 489 (548)
Q Consensus 417 -------Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~ 489 (548)
++.|.++|+.+.+.+..+.. .....
T Consensus 290 ~~~~~~~~~~V~VID~~t~~vv~~i~~------------------------------------------------g~~p~ 321 (373)
T 2mad_H 290 AWKLHAAAKEVTSVTGLVGQTSSQISL------------------------------------------------GHDVD 321 (373)
T ss_pred cccccCCCCeEEEEECCCCEEEEEEEC------------------------------------------------CCCcC
Confidence 35788888888887766543 22468
Q ss_pred EEEEeCCe---EEEEE-CCCeEEEEeCCCCCc
Q 008939 490 GLIFTQES---VLTVC-REGHIKIWMRPGVAE 517 (548)
Q Consensus 490 ~l~fspd~---l~t~s-~Dg~I~iW~~~~~~~ 517 (548)
+++|+||+ ++++. .++.|.+||..+.+.
T Consensus 322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred eEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 89999973 66666 589999999887663
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.30 E-value=7e-09 Score=99.82 Aligned_cols=199 Identities=10% Similarity=0.038 Sum_probs=135.3
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
...+.+++++++ +...++...++.|.+||... ++.. ... . .....+.++++.+++. ++++...+
T Consensus 19 ~~~p~~i~~d~~---g~l~v~~~~~~~v~~~~~~~-------~~~~-~~~-~---~~~~~~~~i~~~~~g~-l~v~~~~~ 82 (300)
T 2qc5_A 19 DSGPYGITSSED---GKVWFTQHKANKISSLDQSG-------RIKE-FEV-P---TPDAKVMCLIVSSLGD-IWFTENGA 82 (300)
T ss_dssp TCCEEEEEECTT---SCEEEEETTTTEEEEECTTS-------CEEE-EEC-S---STTCCEEEEEECTTSC-EEEEETTT
T ss_pred CCCcceeeECCC---CCEEEEcCCCCeEEEECCCC-------ceEE-EEC-C---CCCCcceeEEECCCCC-EEEEecCC
Confidence 357889999887 65555555678999998652 1111 000 0 1235788999999987 66666667
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
+.|..||... . .. .+. .......+.++++.++++++++...++.|..||.. ++
T Consensus 83 ~~v~~~d~~g-~-~~-~~~-----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 83 NKIGKLSKKG-G-FT-EYP-----------------------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp TEEEEECTTS-C-EE-EEE-----------------------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred CeEEEECCCC-C-eE-Eec-----------------------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC
Confidence 8899998662 1 10 000 00012568899999999887777668899999987 65
Q ss_pred EEE-eeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE-eccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 333 LIC-GGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA-WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 333 ~~~-~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~-~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
... .+......+..+++.++++++++...++.|.+||. +++... .+..+...+.++++++ +| .+
T Consensus 136 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-------~g------~l 201 (300)
T 2qc5_A 136 IYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGN-------DG------AL 201 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-------TS------SE
T ss_pred EEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECC-------CC------CE
Confidence 542 23334457899999999997777666889999998 554433 2233456789999998 88 56
Q ss_pred EEEEeCCCeEEEEECCCCe
Q 008939 411 FGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 411 l~s~~~Dg~i~lwd~~~~~ 429 (548)
+++....+.|.+||. +++
T Consensus 202 ~v~~~~~~~i~~~~~-~g~ 219 (300)
T 2qc5_A 202 WFVEIMGNKIGRITT-TGE 219 (300)
T ss_dssp EEEETTTTEEEEECT-TCC
T ss_pred EEEccCCCEEEEEcC-CCc
Confidence 666666778999998 444
No 211
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.30 E-value=4.9e-10 Score=113.00 Aligned_cols=243 Identities=17% Similarity=0.129 Sum_probs=165.2
Q ss_pred eEEeCCCCCEEEEec-----------CCeEEEEEccCCCCCCeEEEecC-------CCCceEEEecCCCCCCceEEEEEc
Q 008939 135 NTNFDGKGTYIIFNV-----------GDAIFISDLNSQDKDPIKSIHFS-------NSNPVCHAFDQDAKDGHDLLIGLN 196 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~-----------~d~v~vwd~~~~~~~~i~~~~~~-------~~~~~~~~~~p~~~~~~~l~~g~~ 196 (548)
.+.++|||+++.++. ++.|.++|..+.+ .+..+... ...+..++|+|+ +++|+++..
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--vv~~I~v~g~~r~~~g~~P~~~~~spD---Gk~lyV~n~ 196 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--PIADIELPDAPRFLVGTYQWMNALTPD---NKNLLFYQF 196 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGSEECTT---SSEEEEEEC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--EEEEEECCCccccccCCCcceEEEcCC---CCEEEEEec
Confidence 799999999887764 3489999999844 78777653 246788999999 888998874
Q ss_pred --CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccc
Q 008939 197 --SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 197 --dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 274 (548)
++.|.++|+.+ .+++..... .. +....|++...+++.+.||.+.+.+... +.......
T Consensus 197 ~~~~~VsVID~~t------~kvv~~I~v--------~g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~-~~v~~~~~--- 256 (426)
T 3c75_H 197 SPAPAVGVVDLEG------KTFDRMLDV--------PD--CYHIFPASPTVFYMNCRDGSLARVDFAD-GETKVTNT--- 256 (426)
T ss_dssp SSSCEEEEEETTT------TEEEEEEEC--------CS--EEEEEEEETTEEEEEETTSSEEEEECCT-TCCEEEEC---
T ss_pred CCCCeEEEEECCC------CeEEEEEEc--------CC--ceeeccCCCcEEEEEcCCCCEEEEECCC-CcEEEEee---
Confidence 57899999886 233332221 11 1344565555777788888888888833 22211000
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCC-eEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEE--eeee----------cC
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGS-INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC--GGKS----------YY 341 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~--~~~~----------~~ 341 (548)
. .+.....+ ...+.|.+++..++.....+.|.+.|+....... .+.- ..
T Consensus 257 --~----------------~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p 318 (426)
T 3c75_H 257 --E----------------VFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP 318 (426)
T ss_dssp --C----------------CCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred --e----------------eeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence 0 00000011 1135678988888877888999999997554321 1110 01
Q ss_pred CceEEEEEccCCCEEEEEeC----------CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeE-E
Q 008939 342 GALLCCAWSMDGKYILTGGE----------DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY-R 410 (548)
Q Consensus 342 ~~v~~l~~spdg~~l~sgs~----------dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~-~ 410 (548)
.....++++|+++.+++... .+.|.++|+.+.+.+.++.. .....+|.|+| || + +
T Consensus 319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~sp-------Dg------~~~ 384 (426)
T 3c75_H 319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQ-------DA------EPL 384 (426)
T ss_dssp CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECC-------SS------SCE
T ss_pred CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEcc-------CC------CEE
Confidence 12234789999988777642 35799999999999988863 23578899999 98 5 6
Q ss_pred EEEEe-CCCeEEEEECCCCeEEeee
Q 008939 411 FGSVG-QDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 411 l~s~~-~Dg~i~lwd~~~~~~~~~~ 434 (548)
+++.. .++.|.++|+.+.+.+..+
T Consensus 385 lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 385 LYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCCeEEEEECCCCCEEEEe
Confidence 66666 5999999999999999887
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.30 E-value=1.5e-09 Score=110.12 Aligned_cols=202 Identities=14% Similarity=0.116 Sum_probs=132.2
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 253 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg 253 (548)
..+..++|+++ +.++++...++.|++||+... .+..... ...... ++|+|+++ .|+++..++
T Consensus 131 ~~P~~la~d~~---g~lyv~d~~~~~I~~id~~~g------~~~~~~~-------~~~~~~-ia~~~~g~-~l~~~d~~~ 192 (409)
T 3hrp_A 131 KYMWGIAAVGN---NTVLAYQRDDPRVRLISVDDN------KVTTVHP-------GFKGGK-PAVTKDKQ-RVYSIGWEG 192 (409)
T ss_dssp CCEEEEEECST---TEEEEEETTTTEEEEEETTTT------EEEEEEE-------TCCBCB-CEECTTSS-EEEEEBSST
T ss_pred CCceEEEEeCC---CCEEEEecCCCcEEEEECCCC------EEEEeec-------cCCCCc-eeEecCCC-cEEEEecCC
Confidence 36889999987 776666666789999998751 2211111 112233 99999998 777777766
Q ss_pred --cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 254 --NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 254 --~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.|++|+...... ...+ ..... ....+.+++++|+...|+++..++.|+.||..+
T Consensus 193 ~~~I~~~d~~~~~~-~~~~----------------------g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~ 249 (409)
T 3hrp_A 193 THTVYVYMKASGWA-PTRI----------------------GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT 249 (409)
T ss_dssp TCEEEEEEGGGTTC-EEEE----------------------EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT
T ss_pred CceEEEEEcCCCce-eEEe----------------------eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC
Confidence 788888754211 0000 00000 125577899999544555577788999999987
Q ss_pred CeEEEe----eeecCCce--EEEEEccC-CCEEEEEeCCCeEEEEECCCceeEEeccCC---------------CCCeEE
Q 008939 331 EQLICG----GKSYYGAL--LCCAWSMD-GKYILTGGEDDLVQVWSMEDRKVVAWGEGH---------------NSWVSG 388 (548)
Q Consensus 331 ~~~~~~----~~~~~~~v--~~l~~spd-g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h---------------~~~V~~ 388 (548)
+..... ..++...- ..++|+|+ +.++++-..++.|+.|+.+.. +..+.++ -.....
T Consensus 250 ~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~g 327 (409)
T 3hrp_A 250 QEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNG 327 (409)
T ss_dssp CCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEE
T ss_pred CCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeE
Confidence 754322 12222222 38999995 666666667889999998643 2222222 245789
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEECCCCeEE
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDLEMDEIV 431 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~~~~~~ 431 (548)
++++| +| .++++-. .+++|+.||+.+++..
T Consensus 328 ia~d~-------dG------~lyvad~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 328 MTVDE-------DG------NFYIVDGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp EEECT-------TC------CEEEEETTTTCEEEEEETTTTEEE
T ss_pred EEEeC-------CC------CEEEEeCCCCCEEEEEECCCCEEE
Confidence 99999 88 6777777 8899999998887754
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.29 E-value=6.2e-10 Score=121.08 Aligned_cols=247 Identities=16% Similarity=0.165 Sum_probs=153.1
Q ss_pred CCCCceeEEeCCCCCEEEEec----CC--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC----
Q 008939 129 SSTSMTNTNFDGKGTYIIFNV----GD--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG---- 198 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~----~d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg---- 198 (548)
|...+..++|+|||++|+++. .+ .|+|||++++. .+. ..........++|+ + ++.|+.+..+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~--~~~-~~~~~~k~~~~~Ws-D---g~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ--PLE-TPLKDVKFSGISWL-G---NEGFFYSSYDKPDGS 199 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS--EEE-EEEEEEESCCCEEE-T---TTEEEEEESSCCC--
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC--CCc-cccCCceeccEEEe-C---CCEEEEEEecCcccc
Confidence 445677889999999999732 22 89999999865 332 22222223567899 8 66788888774
Q ss_pred ---------cEEEEEeeecccccccceeeeeeeccCCcc-cCcceEEEEEecCCCcEEEEEeC---CCcEEEEEcCCCCC
Q 008939 199 ---------DVYSVSLRQQLQDVGKKLVGAHHYNKDGSV-NNSRCTSVTWVPGGDGAFVVGHA---DGNLYVYEKSKDGA 265 (548)
Q Consensus 199 ---------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~~~---dg~v~vwd~~~~~~ 265 (548)
.|++|++.+... ...++... .. +...+..+.|+|+++.++++... +..|+++|+.....
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~--~~~~v~~~------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQE--DDRLVFGA------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp -----CCCCEEEEEETTSCGG--GCEEEESC------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred cccccCCCcEEEEEECCCCcc--cceEEEec------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 399999876211 11111110 11 23456789999999944454442 25899999875321
Q ss_pred CCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC-C---CeEEEEeCCCCeE--EEeeee
Q 008939 266 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR-D---GYLRVFDYSKEQL--ICGGKS 339 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-d---g~v~vwd~~~~~~--~~~~~~ 339 (548)
....+..+....... |++++..|+..+. + +.|.++|+.++.. ...+..
T Consensus 272 -------------------------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~ 325 (693)
T 3iuj_A 272 -------------------------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP 325 (693)
T ss_dssp -------------------------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred -------------------------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec
Confidence 122233333444444 6666665555443 3 6799999987653 234455
Q ss_pred cCCceEEEEEccCCCEEEEEeCCC---eEEEEECCCceeEEecc-CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe
Q 008939 340 YYGALLCCAWSMDGKYILTGGEDD---LVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415 (548)
Q Consensus 340 ~~~~v~~l~~spdg~~l~sgs~dg---~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~ 415 (548)
|...+. .|+++++.|+....++ .|++||+..+.. ..+. .+...+..+.++| ++. .++++.+
T Consensus 326 ~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~-------d~~-----~l~~~~s 390 (693)
T 3iuj_A 326 ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKH-------DDP-----ALYFGFE 390 (693)
T ss_dssp CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCT-------TCS-----CEEEEEE
T ss_pred CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeecCCCceEEeeecCC-------CCC-----EEEEEec
Confidence 655555 8999999887766544 689999985543 3333 3455677777777 662 2333332
Q ss_pred C---CCeEEEEECCCCeEE
Q 008939 416 Q---DTRLLLWDLEMDEIV 431 (548)
Q Consensus 416 ~---Dg~i~lwd~~~~~~~ 431 (548)
. -+.|..||+.+++..
T Consensus 391 s~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 391 NYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp CSSSCCEEEEECTTTCCEE
T ss_pred CCCCCCEEEEEECCCCeEE
Confidence 2 278999999887643
No 214
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.28 E-value=3e-09 Score=105.36 Aligned_cols=277 Identities=12% Similarity=0.039 Sum_probs=170.5
Q ss_pred EEeCCCCCEEEEecC------CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE----------cCCc
Q 008939 136 TNFDGKGTYIIFNVG------DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL----------NSGD 199 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~------d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~----------~dg~ 199 (548)
....|++..+.+... +.|.+.|..+.+ .+..+.... .+. ++++|+ ++.|+++. .++.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~--v~~~I~vG~-~P~-va~spD---G~~lyVan~~~~r~~~G~~~~~ 110 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMIDGGF-LPN-PVVADD---GSFIAHASTVFSRIARGERTDY 110 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE--EEEEEEECS-SCE-EEECTT---SSCEEEEEEEEEETTEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCe--EEEEEECCC-CCc-EEECCC---CCEEEEEcccccccccCCCCCE
Confidence 344688887776532 389999998844 777777543 455 999999 77788876 3577
Q ss_pred EEEEEeeecccccccceeeeeeecc-CCcccCcceEEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCccccccc
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNK-DGSVNNSRCTSVTWVPGGDGAFVVGHA--DGNLYVYEKSKDGAGDSSFPVIKDQ 276 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~ 276 (548)
|.+||..+ .++........ ...........+.|+|+++ +|+++.. ++.|.++|+.+.
T Consensus 111 VsviD~~t------~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk-~lyVan~~~~~~VsVID~~t~------------- 170 (386)
T 3sjl_D 111 VEVFDPVT------LLPTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGK------------- 170 (386)
T ss_dssp EEEECTTT------CCEEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTT-------------
T ss_pred EEEEECCC------CeEEEEEECCCccccccCCCCceEEEcCCCC-EEEEEEcCCCCeEEEEECCCC-------------
Confidence 99999876 22222222111 0000123466899999999 6666653 689999999872
Q ss_pred ceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC-CeEEEeeeecC----Cce-EEEEEc
Q 008939 277 TQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK-EQLICGGKSYY----GAL-LCCAWS 350 (548)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~----~~v-~~l~~s 350 (548)
+.+..+.. ..+ ...+....+.+++.+.||.+.+.++.+ ++.+.....+. .++ ....|.
T Consensus 171 -------------~vv~tI~v--~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~ 234 (386)
T 3sjl_D 171 -------------AFKRMLDV--PDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS 234 (386)
T ss_dssp -------------EEEEEEEC--CSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE
T ss_pred -------------cEEEEEEC--CCc-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeE
Confidence 12222221 111 122333456677788889888888875 55432211111 122 124564
Q ss_pred -cCCCEEEEEeCCCeEEEEECCCce--eEEecc---------C-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-
Q 008939 351 -MDGKYILTGGEDDLVQVWSMEDRK--VVAWGE---------G-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ- 416 (548)
Q Consensus 351 -pdg~~l~sgs~dg~I~vwd~~~~~--~~~~~~---------~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~- 416 (548)
++|++++ .+.++.|.+.|+.... .+..+. + .......++++| ++. +++++...
T Consensus 235 ~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-------~~~-----~lyV~~~~~ 301 (386)
T 3sjl_D 235 QKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-------ALD-----RIYLLVDQR 301 (386)
T ss_dssp TTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-------TTT-----EEEEEEEEC
T ss_pred cCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-------CCC-----eEEEEeccc
Confidence 6886555 5568999999997653 332221 0 112333577787 762 33333321
Q ss_pred --------CCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCe
Q 008939 417 --------DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPL 488 (548)
Q Consensus 417 --------Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V 488 (548)
...|.+.|+.+.+.+..+.. ...+
T Consensus 302 ~~~~hk~~~~~V~viD~~t~kv~~~i~v------------------------------------------------g~~~ 333 (386)
T 3sjl_D 302 DEWRHKTASRFVVVLDAKTGERLAKFEM------------------------------------------------GHEI 333 (386)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEE------------------------------------------------EEEE
T ss_pred cccccCCCCCEEEEEECCCCeEEEEEEC------------------------------------------------CCCc
Confidence 25799999999988876654 1257
Q ss_pred eEEEEeCCe---EEEE-ECCCeEEEEeCCCCC
Q 008939 489 SGLIFTQES---VLTV-CREGHIKIWMRPGVA 516 (548)
Q Consensus 489 ~~l~fspd~---l~t~-s~Dg~I~iW~~~~~~ 516 (548)
.+|+|++|. |+++ ..++.|.++|..+.+
T Consensus 334 ~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 334 DSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp CEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 889999973 5554 458999999988766
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.24 E-value=1.2e-08 Score=100.10 Aligned_cols=212 Identities=16% Similarity=0.109 Sum_probs=136.0
Q ss_pred eeEEeCCCCCEEEE-ecC-CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 134 TNTNFDGKGTYIIF-NVG-DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 134 ~~~~~~~~g~~l~~-~~~-d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
....|++++..+++ ... +.|++||.+++. +..+. .+..+.+++|+|+ +.+++ +.. ..|++||..+.
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~~~-~~~~v~~i~~~~d---g~l~v-~~~-~gl~~~d~~~g--- 119 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGR---KTVHA-LPFMGSALAKISD---SKQLI-ASD-DGLFLRDTATG--- 119 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTE---EEEEE-CSSCEEEEEEEET---TEEEE-EET-TEEEEEETTTC---
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCc---EEEEE-CCCcceEEEEeCC---CeEEE-EEC-CCEEEEECCCC---
Confidence 35789998665555 433 499999988632 33343 3568999999998 55544 444 45999987641
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC------CCcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA------DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
.+..... .........+++++++|++. ++++... .+.|+.++ . +..
T Consensus 120 ---~~~~~~~--~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~-g~~------------------- 171 (326)
T 2ghs_A 120 ---VLTLHAE--LESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--K-GKV------------------- 171 (326)
T ss_dssp ---CEEEEEC--SSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--T-TEE-------------------
T ss_pred ---cEEEEee--CCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--C-CcE-------------------
Confidence 1111111 00001235689999999998 5554432 24455555 2 211
Q ss_pred CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCC--CC-eE-----EEeeeecCCceEEEEEccCCCEE
Q 008939 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYS--KE-QL-----ICGGKSYYGALLCCAWSMDGKYI 356 (548)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~--~~-~~-----~~~~~~~~~~v~~l~~spdg~~l 356 (548)
..+..+......++|+|+++.|+.+. .++.|.+||+. ++ +. ...+.........+++.++|.++
T Consensus 172 -------~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lw 244 (326)
T 2ghs_A 172 -------TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW 244 (326)
T ss_dssp -------EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred -------EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEE
Confidence 11111123567899999998776654 56899999986 55 32 22222234557789999999887
Q ss_pred EEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEe-c
Q 008939 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD-S 393 (548)
Q Consensus 357 ~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~-p 393 (548)
++...++.|.+||. +++.+..+..+...+++++|. |
T Consensus 245 va~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 245 NARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp EEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEEST
T ss_pred EEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecC
Confidence 77767789999998 577777777677789999998 7
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=2.7e-08 Score=97.58 Aligned_cols=200 Identities=10% Similarity=0.066 Sum_probs=125.1
Q ss_pred ceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcE
Q 008939 176 PVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNL 255 (548)
Q Consensus 176 ~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v 255 (548)
..+.+|+|+. +.++++...++.|+.||.... .... .. ....+.+++|.|++. +++ +..+ .|
T Consensus 51 ~egp~~~~~~--~~l~~~d~~~~~i~~~d~~~~------~~~~-~~-------~~~~v~~i~~~~dg~-l~v-~~~~-gl 111 (326)
T 2ghs_A 51 GEGPTFDPAS--GTAWWFNILERELHELHLASG------RKTV-HA-------LPFMGSALAKISDSK-QLI-ASDD-GL 111 (326)
T ss_dssp EEEEEEETTT--TEEEEEEGGGTEEEEEETTTT------EEEE-EE-------CSSCEEEEEEEETTE-EEE-EETT-EE
T ss_pred CcCCeEeCCC--CEEEEEECCCCEEEEEECCCC------cEEE-EE-------CCCcceEEEEeCCCe-EEE-EECC-CE
Confidence 3566788862 456677777889999997651 1111 11 235789999999987 554 4444 49
Q ss_pred EEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC------CCeEEEEeCC
Q 008939 256 YVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR------DGYLRVFDYS 329 (548)
Q Consensus 256 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~------dg~v~vwd~~ 329 (548)
++||..... .. .+..... . .....+++++++|+|+++++... .+.|..++
T Consensus 112 ~~~d~~~g~-~~-~~~~~~~-------------~-------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-- 167 (326)
T 2ghs_A 112 FLRDTATGV-LT-LHAELES-------------D-------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-- 167 (326)
T ss_dssp EEEETTTCC-EE-EEECSST-------------T-------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--
T ss_pred EEEECCCCc-EE-EEeeCCC-------------C-------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--
Confidence 999986521 10 0000000 0 00135789999999987665432 24566666
Q ss_pred CCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECC--Cc-e-----eEEeccCCCCCeEEEEEecCCCCCCC
Q 008939 330 KEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSME--DR-K-----VVAWGEGHNSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 330 ~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~--~~-~-----~~~~~~~h~~~V~~v~~~p~~~~~~~ 400 (548)
+++... +.........++|+||++.|+.+ ..++.|.+||++ ++ + .+..+.........+++++
T Consensus 168 ~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~------- 239 (326)
T 2ghs_A 168 KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA------- 239 (326)
T ss_dssp TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-------
T ss_pred CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-------
Confidence 455433 22333457789999999876554 457899999986 55 2 2333433455678899988
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
+| .++++...++.|.+||. .++.+..
T Consensus 240 ~G------~lwva~~~~~~v~~~d~-~g~~~~~ 265 (326)
T 2ghs_A 240 EG------HIWNARWGEGAVDRYDT-DGNHIAR 265 (326)
T ss_dssp TS------CEEEEEETTTEEEEECT-TCCEEEE
T ss_pred CC------CEEEEEeCCCEEEEECC-CCCEEEE
Confidence 88 56666666788999998 4554443
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.19 E-value=5.2e-09 Score=101.65 Aligned_cols=224 Identities=13% Similarity=0.086 Sum_probs=139.6
Q ss_pred ceeEEeCCCCCEEEE-ecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc
Q 008939 133 MTNTNFDGKGTYIIF-NVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ 210 (548)
Q Consensus 133 v~~~~~~~~g~~l~~-~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~ 210 (548)
.....|+++|+.|++ ...+ .|+.|+... .+..+......+..++++++ ++++++...++.|.+|+.....
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----~~~~~~~~~~~~~gl~~d~d---G~l~v~~~~~~~v~~~~~~g~~- 118 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWREDG----TVDVLLDATAFTNGNAVDAQ---QRLVHCEHGRRAITRSDADGQA- 118 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTS----CEEEEEESCSCEEEEEECTT---SCEEEEETTTTEEEEECTTSCE-
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCCC----CEEEEeCCCCccceeeECCC---CCEEEEECCCCEEEEECCCCCE-
Confidence 346889999995555 4443 899998742 24555556678899999998 6654444445789999864210
Q ss_pred ccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEE----EeC-------------CCcEEEEEcCCCCCCCCCcccc
Q 008939 211 DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV----GHA-------------DGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s----~~~-------------dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
..+.. .. .. .....++++++.|+|. ++++ |.. .+.|+.||.... .
T Consensus 119 ---~~~~~--~~--~~-~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~-------- 180 (305)
T 3dr2_A 119 ---HLLVG--RY--AG-KRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-P-------- 180 (305)
T ss_dssp ---EEEEC--EE--TT-EECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-C--------
T ss_pred ---EEEEe--cc--CC-CccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCC-c--------
Confidence 11110 00 00 1234578899999998 6665 332 245666655431 1
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC------CeEEEEeCCCCeEE--Eee-eecCCce
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD------GYLRVFDYSKEQLI--CGG-KSYYGAL 344 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d------g~v~vwd~~~~~~~--~~~-~~~~~~v 344 (548)
+..+. .....+.++|+||++.|+.+... +.|.+|++..+.+. ..+ ....+..
T Consensus 181 ------------------~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~p 241 (305)
T 3dr2_A 181 ------------------LQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLP 241 (305)
T ss_dssp ------------------CEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCC
T ss_pred ------------------EEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCC
Confidence 11111 22456789999999988887765 78999998765421 111 1123345
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 345 LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 345 ~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
..+++.++|++. ++..+ .|.+||. +++.+..+..+. .+..++|.| ++ ..|..++.++
T Consensus 242 dgi~~d~~G~lw-v~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~-------d~------~~L~it~~~~ 298 (305)
T 3dr2_A 242 DGFCVDRGGWLW-SSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQ-------AQ------QRLFITGGPC 298 (305)
T ss_dssp CSEEECTTSCEE-ECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECT-------TS------CEEEEEETTE
T ss_pred CeEEECCCCCEE-EecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeC-------CC------CEEEEEcCCe
Confidence 678999999844 44444 5999998 466666666444 588999988 77 4566555554
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.18 E-value=9.8e-10 Score=108.97 Aligned_cols=242 Identities=10% Similarity=-0.034 Sum_probs=162.3
Q ss_pred eEEeCCCCCEEEEec-----------CCeEEEEEccCCCCCCeEEEecC-------CCCceEEEecCCCCCCceEEEEEc
Q 008939 135 NTNFDGKGTYIIFNV-----------GDAIFISDLNSQDKDPIKSIHFS-------NSNPVCHAFDQDAKDGHDLLIGLN 196 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~-----------~d~v~vwd~~~~~~~~i~~~~~~-------~~~~~~~~~~p~~~~~~~l~~g~~ 196 (548)
.+.|+|||+++.++. ++.|.+||+.+.. .+..+... ...+..++|+|+ +++|+++..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~--vv~~I~v~~~~~~~~g~~P~~ia~SpD---Gk~lyVan~ 143 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFSVGPRVHIIGNCAS---SACLLFFLF 143 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEEETTSCSCCBSCCTTSEEECTT---SSCEEEEEC
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC--EEEEEECCCccccccCCCcceEEEcCC---CCEEEEEcc
Confidence 799999999888865 3489999999854 88888754 246889999999 778998875
Q ss_pred --CCcEEE--EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCC----CCCCCC
Q 008939 197 --SGDVYS--VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK----DGAGDS 268 (548)
Q Consensus 197 --dg~I~i--wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~----~~~~~~ 268 (548)
+..|.+ +|+.+ .+.+ . ... |+...|++...+++.+.||.+.+.|+.. .+....
T Consensus 144 ~~~~~v~V~~iD~~t-----v~~i----~--------v~~--~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~ 204 (368)
T 1mda_H 144 GSSAAAGLSVPGASD-----DQLT----K--------SAS--CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA 204 (368)
T ss_dssp SSSCEEEEEETTTEE-----EEEE----E--------CSS--CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred CCCCeEEEEEEchhh-----ceEE----E--------CCC--ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEE
Confidence 356888 88765 1111 1 001 1224566665777788899998888875 222111
Q ss_pred CcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe--EEEeeee-------
Q 008939 269 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ--LICGGKS------- 339 (548)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~--~~~~~~~------- 339 (548)
... . .+.....+. . .+++..++..+. +.|.+.|+.... .+..+.-
T Consensus 205 ~~t-----~----------------~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~ 258 (368)
T 1mda_H 205 QCT-----G----------------AQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKA 258 (368)
T ss_dssp CSC-----T----------------TSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHH
T ss_pred Eee-----e----------------eeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccc
Confidence 000 0 001111333 3 555666666666 899999996542 3322211
Q ss_pred c---CCceEEEEEccCCCEEEEEeC---------CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 340 Y---YGALLCCAWSMDGKYILTGGE---------DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 340 ~---~~~v~~l~~spdg~~l~sgs~---------dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
+ ......++++||++.++++.. ++.+.++|+.+++.+.++.... ...+|+|+| ||.
T Consensus 259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~-------Dg~---- 326 (368)
T 1mda_H 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQ-------DGA---- 326 (368)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECC-------SSS----
T ss_pred cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECC-------CCC----
Confidence 0 111223789999998887543 2356799999999988887433 578999999 882
Q ss_pred eEEEEEEe-CCCeEEEEECCCCeEEeeeecCCC
Q 008939 408 MYRFGSVG-QDTRLLLWDLEMDEIVVPLRRGPL 439 (548)
Q Consensus 408 ~~~l~s~~-~Dg~i~lwd~~~~~~~~~~~~~~~ 439 (548)
+++++.. .++.|.++|+.+.+.+..+..+..
T Consensus 327 -~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 327 -SDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp -CEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred -EEEEEccCCCCeEEEEECCCCcEEEEEECCCC
Confidence 3677777 599999999999999988875433
No 219
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.16 E-value=1.6e-07 Score=93.88 Aligned_cols=303 Identities=12% Similarity=0.099 Sum_probs=175.5
Q ss_pred CCEEEEecCC-eEEEEEccCCCCCCeEEEecCC--------CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc
Q 008939 142 GTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSN--------SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV 212 (548)
Q Consensus 142 g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~--------~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~ 212 (548)
+..+.++..+ .|+.+|.++++ .+-...... ........... +..+++++.++.|+.+|.++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~~g~l~a~d~~t----- 122 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGK--EIWSVSLAEKDGWFSKEPALLSGGVTVS---GGHVYIGSEKAQVYALNTSD----- 122 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCC--EEEEEECCC---CCSCCCCCEEEEEEEE---TTEEEEEETTSEEEEEETTT-----
T ss_pred CCEEEEEcCCCeEEEEEccCCc--eeeeecCccccccccccCcccccCceEe---CCEEEEEcCCCEEEEEECCC-----
Confidence 3444444444 88888888755 444444321 11111111111 45788999999999999875
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCe
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 292 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (548)
++.+... .. .......+ ... + . .++++..++.|+.+|..+ +.....+.... +.
T Consensus 123 G~~~W~~-~~--~~~~~~~p----~~~-~-~-~v~v~~~~g~l~~~d~~t-G~~~W~~~~~~----------------~~ 175 (376)
T 3q7m_A 123 GTVAWQT-KV--AGEALSRP----VVS-D-G-LVLIHTSNGQLQALNEAD-GAVKWTVNLDM----------------PS 175 (376)
T ss_dssp CCEEEEE-EC--SSCCCSCC----EEE-T-T-EEEEECTTSEEEEEETTT-CCEEEEEECCC------------------
T ss_pred CCEEEEE-eC--CCceEcCC----EEE-C-C-EEEEEcCCCeEEEEECCC-CcEEEEEeCCC----------------Cc
Confidence 3332221 11 11111111 121 3 3 688888999999999876 32222111100 00
Q ss_pred eEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCc-------eEEEEEcc--CCCEEEEEeCCC
Q 008939 293 ARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA-------LLCCAWSM--DGKYILTGGEDD 363 (548)
Q Consensus 293 ~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-------v~~l~~sp--dg~~l~sgs~dg 363 (548)
..+... ..... .+..++.+..++.|..+|..+++.+......... +..+...| .+..+++++.++
T Consensus 176 ~~~~~~----~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g 249 (376)
T 3q7m_A 176 LSLRGE----SAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNG 249 (376)
T ss_dssp ---CCC----CCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTS
T ss_pred eeecCC----CCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCc
Confidence 000000 11111 1346777888999999999999988765532110 00000111 245678888899
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC--CCC
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP--LGG 441 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~--~~~ 441 (548)
.|..+|.++++.+..... .....+... ++ .+..++.++.|..+|..+++.+....... ...
T Consensus 250 ~l~~~d~~tG~~~w~~~~--~~~~~~~~~--------~~-------~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 312 (376)
T 3q7m_A 250 NLTALDLRSGQIMWKREL--GSVNDFIVD--------GN-------RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLT 312 (376)
T ss_dssp CEEEEETTTCCEEEEECC--CCEEEEEEE--------TT-------EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCC
T ss_pred EEEEEECCCCcEEeeccC--CCCCCceEE--------CC-------EEEEEcCCCeEEEEECCCCcEEEeecccCCCccc
Confidence 999999999987765542 234455543 33 67777889999999999999887665211 111
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCee-EEEEeCCeEEEEECCCeEEEEeC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLS-GLIFTQESVLTVCREGHIKIWMR 512 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~-~l~fspd~l~t~s~Dg~I~iW~~ 512 (548)
.+.. .+..+.++..++.+..+|..+.+.+.........+. ......+.|+.++.||.|..|+.
T Consensus 313 ~~~~--------~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 313 SPVL--------YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp CCEE--------ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEEC
T ss_pred CCEE--------ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEeC
Confidence 1221 235566666777788888888887777665333332 23444567888899999988863
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.15 E-value=9.5e-09 Score=99.79 Aligned_cols=156 Identities=10% Similarity=0.009 Sum_probs=107.9
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
........|+|+++.++++...++.|+.|+... . +..+..+...+..+++++
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g--~--------------------------~~~~~~~~~~~~gl~~d~ 95 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG--T--------------------------VDVLLDATAFTNGNAVDA 95 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS--C--------------------------EEEEEESCSCEEEEEECT
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC--C--------------------------EEEEeCCCCccceeeECC
Confidence 345678999999986777777889999998732 1 233334456789999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeec----CCceEEEEEccCCCEEEE----EeC-------------CCeEEEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSY----YGALLCCAWSMDGKYILT----GGE-------------DDLVQVW 368 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~----~~~v~~l~~spdg~~l~s----gs~-------------dg~I~vw 368 (548)
+|+++++...++.|.+||.. ++........ ...+..++++|+|+++++ |.. .+.|..|
T Consensus 96 dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 96 QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence 99966665556889999986 5543222111 234678999999998876 332 2567888
Q ss_pred ECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC------CeEEEEECCCCe
Q 008939 369 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD------TRLLLWDLEMDE 429 (548)
Q Consensus 369 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D------g~i~lwd~~~~~ 429 (548)
|.++++..... .......++|+| || ..|..+... +.|.+||+..+.
T Consensus 175 d~~~g~~~~~~--~~~~p~gl~~sp-------dg------~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 175 PPDGSPLQRMA--DLDHPNGLAFSP-------DE------QTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp CSSSCCCEEEE--EESSEEEEEECT-------TS------SEEEEEECCC---CCCEEEEEEEETTE
T ss_pred cCCCCcEEEEe--cCCCCcceEEcC-------CC------CEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 87666544333 344568899999 88 455555444 789999987665
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.14 E-value=3.3e-09 Score=105.01 Aligned_cols=264 Identities=11% Similarity=0.060 Sum_probs=152.0
Q ss_pred CCceeEEeCCCCCEEEEec---CCeEEEEEccCCCCCCeEEEe-------cCCCCceEEEecCCCCCCceEEEEEc----
Q 008939 131 TSMTNTNFDGKGTYIIFNV---GDAIFISDLNSQDKDPIKSIH-------FSNSNPVCHAFDQDAKDGHDLLIGLN---- 196 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~---~d~v~vwd~~~~~~~~i~~~~-------~~~~~~~~~~~~p~~~~~~~l~~g~~---- 196 (548)
..+..++++++|+++++.. ++.++||.+..+ .+..+. .+-..+..++++++ +.++++-..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g---~~~~~p~~~~~~~~~~~~p~gv~~d~~---g~L~v~D~g~~~~ 90 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD---GLIPFPPQSGNAIITFDTVLGIKSDGN---GIVWMLDNGNQSK 90 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT---EEEESCCCCSSCCCCCSCEEEEEECSS---SEEEEEECHHHHT
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC---CeecCCCcccCcccceeEeeEEEEcCC---CcEEEEcCCCCcC
Confidence 5677899999999888743 123566666532 222111 12347899999998 655554433
Q ss_pred -CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe---CCCcEEEEEcCCCCCCCCCccc
Q 008939 197 -SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH---ADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 197 -dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~---~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
++.|.+||+.+. ++.....+......+...+..+++.|++..++++-. .++.|++||+... .....+..
T Consensus 91 ~~~~i~~~d~~tg------~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~ 163 (343)
T 2qe8_A 91 SVPKLVAWDTLNN------QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQG 163 (343)
T ss_dssp SCCEEEEEETTTT------EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTT
T ss_pred CCCeEEEEECCCC------eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecC
Confidence 478999998751 222222222111123456789999987653555554 6789999998753 21111110
Q ss_pred ---c-cccceeeeecCC---CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC-eEEEEeCC---CCe-----EEE-
Q 008939 273 ---I-KDQTQFSVAHPR---YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG-YLRVFDYS---KEQ-----LIC- 335 (548)
Q Consensus 273 ---~-~~~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg-~v~vwd~~---~~~-----~~~- 335 (548)
. .+...+...... ......+..|. ..+..++|+|+++.|+++..++ .|..++.. .+. ...
T Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~---~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH---LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp CTTTSCCSCCCEETTEECBEECTTSCEECCC---CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred CCcccccccceeECCEEEEeccCCCceecee---cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 0 000000000000 00011111121 3578999999999998887766 45444431 110 000
Q ss_pred -eeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 008939 336 -GGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413 (548)
Q Consensus 336 -~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s 413 (548)
...++.+....++++++|.++++...++.|.+||.++++....... +-..+.+++|.+ +| +++++
T Consensus 241 ~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~-------~g------~l~v~ 307 (343)
T 2qe8_A 241 IERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS-------DG------YLYFD 307 (343)
T ss_dssp CEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT-------TS------CEEEE
T ss_pred eEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECC-------CC------cEEEE
Confidence 1123344566799999999999998999999999966654333322 346789999988 87 56777
Q ss_pred EeCCCeEEEE
Q 008939 414 VGQDTRLLLW 423 (548)
Q Consensus 414 ~~~Dg~i~lw 423 (548)
....+.+.+|
T Consensus 308 ~~~~~~~~~f 317 (343)
T 2qe8_A 308 CNQLHHSAPL 317 (343)
T ss_dssp ECCGGGSGGG
T ss_pred eCcccccccc
Confidence 6655544433
No 222
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.11 E-value=1.5e-08 Score=102.15 Aligned_cols=274 Identities=9% Similarity=-0.008 Sum_probs=168.9
Q ss_pred CCCCEEEEecC------CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE----------cCCcEEEE
Q 008939 140 GKGTYIIFNVG------DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL----------NSGDVYSV 203 (548)
Q Consensus 140 ~~g~~l~~~~~------d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~----------~dg~I~iw 203 (548)
+++.++.+... +.|.++|+.+.+ .+..+.... .+ .++++|+ ++.|+++. .++.|.++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~--vv~~I~vG~-~P-gia~SpD---gk~lyVan~~~~~~~~G~~~~~Vsvi 154 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGR--ILGMTDGGF-LP-HPVAAED---GSFFAQASTVFERIARGKRTDYVEVF 154 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTE--EEEEEEECS-SC-EEEECTT---SSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCE--EEEEEECCC-CC-ceEECCC---CCEEEEEeccccccccCCCCCEEEEE
Confidence 45555544332 589999999844 888887554 55 8999999 77788886 36789999
Q ss_pred Eeeecccccccceeeeeeec-cCCcccCcceEEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 204 SLRQQLQDVGKKLVGAHHYN-KDGSVNNSRCTSVTWVPGGDGAFVVGHA--DGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~~p~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
|..+ .++....... ............+.|+|+++ +|+++.. ++.|.+.|+.+..
T Consensus 155 D~~t------~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~k---------------- 211 (426)
T 3c75_H 155 DPVT------FLPIADIELPDAPRFLVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKT---------------- 211 (426)
T ss_dssp CTTT------CCEEEEEEETTCCCCCBSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTTTE----------------
T ss_pred ECCC------CcEEEEEECCCccccccCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCCCe----------------
Confidence 9876 2222222211 00000123456789999999 6676653 5789999998621
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCeEEEe----eeecCCc-eEEEEEccCCC
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQLICG----GKSYYGA-LLCCAWSMDGK 354 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~~~~~~~----~~~~~~~-v~~l~~spdg~ 354 (548)
.+..+.. ... ....|++ ..+++.+.||.+.+.++.+++.... +.....+ ...+.+.+++.
T Consensus 212 ----------vv~~I~v--~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~ 277 (426)
T 3c75_H 212 ----------FDRMLDV--PDC--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG 277 (426)
T ss_dssp ----------EEEEEEC--CSE--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred ----------EEEEEEc--CCc--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence 1222221 111 2223332 4555666777777777755554421 1111111 12356899998
Q ss_pred EEEEEeCCCeEEEEECCCceeE--Eecc---C-------CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC------
Q 008939 355 YILTGGEDDLVQVWSMEDRKVV--AWGE---G-------HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ------ 416 (548)
Q Consensus 355 ~l~sgs~dg~I~vwd~~~~~~~--~~~~---~-------h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~------ 416 (548)
.++.....+.|.+.|+...... ..+. . .......++++| |+. +++++...
T Consensus 278 ~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-------dg~-----rlyVa~~~~~~gth 345 (426)
T 3c75_H 278 RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-------QSD-----RIYLLVDQRDEWKH 345 (426)
T ss_dssp EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-------GGT-----EEEEEEEECCTTCT
T ss_pred EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-------CCC-----EEEEEecccccccc
Confidence 8877788899999999765321 1111 0 011122368898 762 34444331
Q ss_pred ---CCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEE
Q 008939 417 ---DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIF 493 (548)
Q Consensus 417 ---Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~f 493 (548)
++.|.+.|+.+.+.+..+.. ......|+|
T Consensus 346 k~~s~~VsVID~~T~kvv~~I~v------------------------------------------------g~~P~gia~ 377 (426)
T 3c75_H 346 KAASRFVVVLNAETGERINKIEL------------------------------------------------GHEIDSINV 377 (426)
T ss_dssp TSCEEEEEEEETTTCCEEEEEEE------------------------------------------------EEEECEEEE
T ss_pred cCCCCEEEEEECCCCeEEEEEEC------------------------------------------------CCCcCeEEE
Confidence 35799999999888876643 113688999
Q ss_pred eCC---eEEEEE-CCCeEEEEeCCCCCc
Q 008939 494 TQE---SVLTVC-REGHIKIWMRPGVAE 517 (548)
Q Consensus 494 spd---~l~t~s-~Dg~I~iW~~~~~~~ 517 (548)
+|| .++++. .++.|.++|..+.+.
T Consensus 378 spDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 378 SQDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp CCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred ccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 997 366776 599999999988764
No 223
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.08 E-value=7.9e-09 Score=101.14 Aligned_cols=301 Identities=14% Similarity=0.098 Sum_probs=178.5
Q ss_pred eEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccc
Q 008939 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK 214 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~ 214 (548)
....+.+|.+.+.+.+..|+.|| .++. .+.........+.++...++ + .|++++.+ |+.+|... +
T Consensus 24 ~~~~d~~g~l~v~t~~~~l~~~d-~~g~--~~~~~~~~~~~~~~~~~~~~---g-~l~v~t~~--l~~~d~~g------~ 88 (330)
T 3hxj_A 24 SPILAKNGTIYLGSSNKNLYAIN-TDGS--VKWFFKSGEIIECRPSIGKD---G-TIYFGSDK--VYAINPDG------T 88 (330)
T ss_dssp CCEECTTSCEECSSTTTTTEEEC-TTSC--EEESSCGGGEEEECCEETTT---T-EECCSSCE--EEEECCCG------G
T ss_pred CceEccCCeEEEEcCCCEEEEEC-CCCc--EEEEEecCCCcccceEEecC---C-cEEEecCc--EEEECCCC------c
Confidence 34555666655444345788888 6543 33332222223344444443 3 46666655 88887532 1
Q ss_pred ceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeE
Q 008939 215 KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIAR 294 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (548)
.+..... .........+. ++ .|.+++.++.|+.+|.. +.... .
T Consensus 89 ~~~~~~~-------~~~~~~~~~~~-~~--~l~v~t~~~~l~~~d~~--g~~~~-------------------------~ 131 (330)
T 3hxj_A 89 EKWRFDT-------KKAIVSDFTIF-ED--ILYVTSMDGHLYAINTD--GTEKW-------------------------R 131 (330)
T ss_dssp GGGGSCC------------CCEEEE-TT--EEEEECTTSEEEEECTT--SCEEE-------------------------E
T ss_pred EEEEEEC-------CCCcccCceEE-CC--EEEEEecCCEEEEEcCC--CCEEE-------------------------E
Confidence 1111000 11112222233 33 68888889999999876 22111 1
Q ss_pred eeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce
Q 008939 295 WHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK 374 (548)
Q Consensus 295 ~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~ 374 (548)
...+...+.++...+++. |..++.++.|..||.. ++.+..+......+.++...+++.++ .++ +.|..+| .+++
T Consensus 132 ~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 132 FKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGT 205 (330)
T ss_dssp EECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSC
T ss_pred EcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCc
Confidence 111223355566676776 5567788999999998 88777666555667778887888744 444 8899999 7777
Q ss_pred eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC-CCCceecCCCCccc
Q 008939 375 VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL-GGSPTFSTGSQSAH 453 (548)
Q Consensus 375 ~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 453 (548)
.+..+......+.++..++ +| .|..++.++.|..+|. +++.+..+..... ...+.+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~-------~g-------~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~------- 263 (330)
T 3hxj_A 206 EKWNFYAGYWTVTRPAISE-------DG-------TIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIG------- 263 (330)
T ss_dssp EEEEECCSSCCCSCCEECT-------TS-------CEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEEC-------
T ss_pred EEEEEccCCcceeceEECC-------CC-------eEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEc-------
Confidence 7666665566788888887 76 4666777888988884 5565555544222 1222221
Q ss_pred cCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC-eEEEEECCCeEEEEeCCCCC
Q 008939 454 WDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 454 ~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd-~l~t~s~Dg~I~iW~~~~~~ 516 (548)
.+..+-+++.++.+..+|. +.+.+..+......+.++...++ .|..++.+|.+++...+...
T Consensus 264 ~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 264 NTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp TTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC----
T ss_pred CCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEeccccc
Confidence 1344555666666667774 55666666555666777877665 48889999999988866543
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.06 E-value=6e-08 Score=104.98 Aligned_cols=311 Identities=11% Similarity=0.133 Sum_probs=176.3
Q ss_pred CEEEEecC-CeEEEEEccCCCCCCeEEEecCCCC-----------ceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc
Q 008939 143 TYIIFNVG-DAIFISDLNSQDKDPIKSIHFSNSN-----------PVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ 210 (548)
Q Consensus 143 ~~l~~~~~-d~v~vwd~~~~~~~~i~~~~~~~~~-----------~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~ 210 (548)
..+.+++. ..|+-+|.++++ .+-........ ...+++. +..|++++.|+.|+.+|.++
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~v~v~~~dg~l~AlDa~T--- 140 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGR--LIWKYDPQSDRHRAGEACCDAVNRGVAVW-----KGKVYVGVLDGRLEAIDAKT--- 140 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCC--EEEEECCCCCGGGGGGCTTCSCCCCCEEE-----TTEEEEECTTSEEEEEETTT---
T ss_pred CEEEEEcCCCeEEEEECCCCc--eeEEEcCCCCccccccccccCCCCccEEE-----CCEEEEEccCCEEEEEECCC---
Confidence 34444443 378888887765 44444322110 0111221 45789999999999999876
Q ss_pred ccccceeeeeee-ccC--CcccCcceEEEEEecCCCcEEEEEe------CCCcEEEEEcCCCCCCCCCccccc-ccc-ee
Q 008939 211 DVGKKLVGAHHY-NKD--GSVNNSRCTSVTWVPGGDGAFVVGH------ADGNLYVYEKSKDGAGDSSFPVIK-DQT-QF 279 (548)
Q Consensus 211 ~~~~~~~~~~~~-~~~--~~~~~~~v~~l~~~p~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~~~~-~~~-~~ 279 (548)
++.+...... ... ......++ + .++ .++++. .+|.|+.||..+ ++....+.... +.. .+
T Consensus 141 --G~~~W~~~~~~~~~~~~~~~~sP~----v-~~g--~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~~~~~~~~p~~~~ 210 (689)
T 1yiq_A 141 --GQRAWSVDTRADHKRSYTITGAPR----V-VNG--KVVIGNGGAEFGVRGYVTAYDAET-GKEAWRFYTVPGDPKLPP 210 (689)
T ss_dssp --CCEEEEEECCSCTTSCCBCCSCCE----E-ETT--EEEECCBCTTTCCBCEEEEEETTT-CCEEEEEESSCCCTTSCC
T ss_pred --CCEeeeecCcCCCCCCccccCCcE----E-ECC--EEEEEeCCCccCCCCEEEEEECCC-CcEEEEecccCCCccccc
Confidence 4444332211 000 00111111 1 134 455554 368999999987 44443332111 000 00
Q ss_pred e-----eecCCCCCCCCeeEee---ecCCCeEEEEECCCCCEEEEEECCCe-------------------EEEEeCCCCe
Q 008939 280 S-----VAHPRYSKSNPIARWH---ICQGSINSIAFSTDGTYLATVGRDGY-------------------LRVFDYSKEQ 332 (548)
Q Consensus 280 ~-----~~~~~~~~~~~~~~~~---~h~~~v~~~~~sp~g~~l~s~~~dg~-------------------v~vwd~~~~~ 332 (548)
. ....... . ..|. .+......++++|+..+|+.+..++. |..+|.++++
T Consensus 211 ~~~~~~~~~~~~~-g---~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~ 286 (689)
T 1yiq_A 211 EGKGMEIAAKTWF-G---DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGE 286 (689)
T ss_dssp CSHHHHHHHTTCC-S---STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCC
T ss_pred ccccccccccccC-C---ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCc
Confidence 0 0000000 0 0000 11122336788898888998887764 9999999999
Q ss_pred EEEeeee--cC-------CceEEEEEccCCC---EEEEEeCCCeEEEEECCCceeEEeccC-CCCCeE------------
Q 008939 333 LICGGKS--YY-------GALLCCAWSMDGK---YILTGGEDDLVQVWSMEDRKVVAWGEG-HNSWVS------------ 387 (548)
Q Consensus 333 ~~~~~~~--~~-------~~v~~l~~spdg~---~l~sgs~dg~I~vwd~~~~~~~~~~~~-h~~~V~------------ 387 (548)
.+..++. |. ..+.......+|+ .++.++.+|.++++|.++++++..... +..+..
T Consensus 287 ~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~ 366 (689)
T 1yiq_A 287 YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILD 366 (689)
T ss_dssp EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEEC
T ss_pred eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccc
Confidence 9887764 21 1222223334665 788999999999999999988743321 111111
Q ss_pred --------------------------EEEEecCCCCCCCCCCccceeEEEEEEe--------------------------
Q 008939 388 --------------------------GVAFDSYWSQPNSDGTAETVMYRFGSVG-------------------------- 415 (548)
Q Consensus 388 --------------------------~v~~~p~~~~~~~dg~~~~~~~~l~s~~-------------------------- 415 (548)
.++|+| +. .++....
T Consensus 367 ~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-------~~------~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g 433 (689)
T 1yiq_A 367 EENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-------DT------GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG 433 (689)
T ss_dssp HHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-------TT------TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred hhhccccCCCCeeEeCCCcccccCCCcceECC-------CC------CEEEEeccccceeeeeccccccccccccccccC
Confidence 245665 43 1333321
Q ss_pred -------------------CCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCC
Q 008939 416 -------------------QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS 476 (548)
Q Consensus 416 -------------------~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~ 476 (548)
.++.|..||+.+++.+..+....+.....++. ....+..++.++.++.+|..+++
T Consensus 434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~t------agglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLST------AGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE------TTTEEEEECTTSEEEEEETTTCC
T ss_pred ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceE------CCCEEEEECCCCcEEEEECCCCc
Confidence 14789999999999999887654333222222 23566778889999999999999
Q ss_pred ceEEeecCCCCe-eEEEEeCC
Q 008939 477 PLVAHRVHTEPL-SGLIFTQE 496 (548)
Q Consensus 477 ~~~~~~~h~~~V-~~l~fspd 496 (548)
.+..++.....+ .-+.|..+
T Consensus 508 ~lw~~~~~~~~~~~p~ty~~~ 528 (689)
T 1yiq_A 508 KLWEQPAASGVMAAPVTYSVD 528 (689)
T ss_dssp EEEEEECSSCCCSCCEEEEET
T ss_pred cceeeeCCCCcccCceEEEEC
Confidence 998887553322 44666665
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.05 E-value=9.4e-09 Score=111.76 Aligned_cols=200 Identities=15% Similarity=0.145 Sum_probs=122.2
Q ss_pred CceEEEecCCCCCCceEEEEEc-C----CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEE
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLN-S----GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVG 249 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~-d----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 249 (548)
.+..++|+|+ +++|+.+.. . ..|++||+.+. +.+.... .......++|+ |++ .|+.+
T Consensus 130 ~l~~~~~SpD---g~~lAy~~~~~G~~~~~i~v~dl~tg-----~~~~~~~--------~~~k~~~~~Ws-Dg~-~l~y~ 191 (693)
T 3iuj_A 130 ALDQLSFSRD---GRILAYSLSLAGSDWREIHLMDVESK-----QPLETPL--------KDVKFSGISWL-GNE-GFFYS 191 (693)
T ss_dssp EEEEEEECTT---SSEEEEEEECSSCCEEEEEEEETTTC-----SEEEEEE--------EEEESCCCEEE-TTT-EEEEE
T ss_pred EEEEEEECCC---CCEEEEEEecCCCceEEEEEEECCCC-----CCCcccc--------CCceeccEEEe-CCC-EEEEE
Confidence 4667799998 777776543 2 35999999862 2221111 11223578899 998 56666
Q ss_pred eCCC-------------cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEE
Q 008939 250 HADG-------------NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLA 315 (548)
Q Consensus 250 ~~dg-------------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~ 315 (548)
..+. .|++|++.+..... ..+..... |...+..+.|+|||++|+
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~----------------------~~v~~~~~~~~~~~~~~~~SpDg~~l~ 249 (693)
T 3iuj_A 192 SYDKPDGSELSARTDQHKVYFHRLGTAQEDD----------------------RLVFGAIPAQHHRYVGATVTEDDRFLL 249 (693)
T ss_dssp ESSCCC-------CCCCEEEEEETTSCGGGC----------------------EEEESCSGGGCCSEEEEEECTTSCEEE
T ss_pred EecCcccccccccCCCcEEEEEECCCCcccc----------------------eEEEecCCCCCeEEEEEEEcCCCCEEE
Confidence 6553 38889887532100 01111112 234577899999999886
Q ss_pred EEEC----CCeEEEEeCCCCe-EEEeeeecCCceEEEEEccCCCEEEEEeC-C---CeEEEEECCCcee--EEeccCCCC
Q 008939 316 TVGR----DGYLRVFDYSKEQ-LICGGKSYYGALLCCAWSMDGKYILTGGE-D---DLVQVWSMEDRKV--VAWGEGHNS 384 (548)
Q Consensus 316 s~~~----dg~v~vwd~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~sgs~-d---g~I~vwd~~~~~~--~~~~~~h~~ 384 (548)
.... +..|.++|+.++. ....+..+....... |+++|..|+..+. + +.|.++|+.++.. ...+..|..
T Consensus 250 ~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 328 (693)
T 3iuj_A 250 ISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ 328 (693)
T ss_dssp EEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred EEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC
Confidence 5543 2589999997763 233445555555554 6677766554443 3 5799999988654 334555666
Q ss_pred CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC--eEEEEECCCCe
Q 008939 385 WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT--RLLLWDLEMDE 429 (548)
Q Consensus 385 ~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg--~i~lwd~~~~~ 429 (548)
.+. .|++ ++. .++++...++ .|++||+..+.
T Consensus 329 ~~~--~~s~-------~g~-----~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 329 QVL--TVHS-------GSG-----YLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp SCE--EEEE-------ETT-----EEEEEEEETTEEEEEEECTTSCE
T ss_pred CEE--EEEE-------ECC-----EEEEEEEECCeeEEEEEECCCCe
Confidence 665 7888 762 3444444554 68999987544
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.05 E-value=3e-08 Score=97.96 Aligned_cols=214 Identities=8% Similarity=0.027 Sum_probs=128.8
Q ss_pred CCceEEEecCCCCCCceEEEEE--cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGL--NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~--~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
..+..++++|+ ++.+++.. .++.+.||.+.. + ++.....+......+...+..|++.+++. ++++-..
T Consensus 17 ~~p~~va~~~~---g~~~v~~~~~~~~~~~l~~~~~-----g-~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g 86 (343)
T 2qe8_A 17 LAPGNITLTPD---GRLFLSLHQFYQPEMQVAELTQ-----D-GLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNG 86 (343)
T ss_dssp SCEEEEEECTT---SCEEEEECGGGCCSCSEEEEET-----T-EEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECH
T ss_pred CCcceEEECCC---CCEEEEeCCCCCCceEEEEECC-----C-CeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCC
Confidence 68899999998 66666653 234355666542 1 12111111112223567899999999986 5554433
Q ss_pred -----CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEE-EEEE---CCCe
Q 008939 252 -----DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYL-ATVG---RDGY 322 (548)
Q Consensus 252 -----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l-~s~~---~dg~ 322 (548)
+..|.+||+.++. ....+..... . ..+...+..+++++++..+ ++-. .++.
T Consensus 87 ~~~~~~~~i~~~d~~tg~-~~~~~~~~~~----------------~---~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~ 146 (343)
T 2qe8_A 87 NQSKSVPKLVAWDTLNNQ-LSRVIYLPPP----------------I---TLSNSFVNDLAVDLIHNFVYISDPAPDDKAA 146 (343)
T ss_dssp HHHTSCCEEEEEETTTTE-EEEEEECCTT----------------T---SCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred CCcCCCCeEEEEECCCCe-EEEEEECChh----------------h---cccccccceEEEecCCCEEEEEcCccCCCCe
Confidence 5789999987521 1111100000 0 0112456889999864444 4444 5789
Q ss_pred EEEEeCCCCeEEEeeeec-----------------------------CCceEEEEEccCCCEEEEEeCCC-eEEEEECC-
Q 008939 323 LRVFDYSKEQLICGGKSY-----------------------------YGALLCCAWSMDGKYILTGGEDD-LVQVWSME- 371 (548)
Q Consensus 323 v~vwd~~~~~~~~~~~~~-----------------------------~~~v~~l~~spdg~~l~sgs~dg-~I~vwd~~- 371 (548)
|.+||+.+++....+..| ...+..++|+|||+.|+.+..++ .|..++..
T Consensus 147 i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~ 226 (343)
T 2qe8_A 147 LIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSAD 226 (343)
T ss_dssp EEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHH
T ss_pred EEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHH
Confidence 999999888765544321 02367899999999888887665 45444432
Q ss_pred --Cc-----eeEE--eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 372 --DR-----KVVA--WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 372 --~~-----~~~~--~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
.+ +... ...++......+++++ +| .++++...++.|.+||..+++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-------~G------~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 227 LSNLQLTDAELGSKIERYSEKPICDGISIDK-------DH------NIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp HTCTTCCHHHHHTTCEEEEECCSCSCEEECT-------TC------CEEEEEGGGTEEEEEETTTTEE
T ss_pred hcCCCCChhhhhcceEecccCCCCceEEECC-------CC------CEEEEccCCCeEEEEECCCCCE
Confidence 11 0000 1112344566799998 88 7888888899999999855653
No 227
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.04 E-value=1.1e-06 Score=83.09 Aligned_cols=252 Identities=9% Similarity=-0.029 Sum_probs=153.2
Q ss_pred CCEEEEecCCeEEEEEccCCCCCC---eEEEecCCCCceEEEecCCCCCCceEEEE-EcCCcEEEEEeeeccccccccee
Q 008939 142 GTYIIFNVGDAIFISDLNSQDKDP---IKSIHFSNSNPVCHAFDQDAKDGHDLLIG-LNSGDVYSVSLRQQLQDVGKKLV 217 (548)
Q Consensus 142 g~~l~~~~~d~v~vwd~~~~~~~~---i~~~~~~~~~~~~~~~~p~~~~~~~l~~g-~~dg~I~iwdl~~~~~~~~~~~~ 217 (548)
|.+|.++..+.|+.++++...... ...+......+..++|+++ +..|+++ ..++.|..+++... ...
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~---~~~ly~~d~~~~~I~~~~~~g~------~~~ 71 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV---DKVVYWTDISEPSIGRASLHGG------EPT 71 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT---TTEEEEEETTTTEEEEEESSSC------CCE
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecC---CCEEEEEECCCCEEEEEecCCC------CcE
Confidence 356667666689999988643221 1112222246789999987 4445544 45678999998652 111
Q ss_pred eeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee
Q 008939 218 GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI 297 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (548)
.... . .......+++.|++..++++-...+.|.+++++... ...+ ...
T Consensus 72 ~~~~---~---~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~~~~------------------------~~~ 119 (267)
T 1npe_A 72 TIIR---Q---DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--RRVL------------------------FDT 119 (267)
T ss_dssp EEEC---T---TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEE------------------------ECS
T ss_pred EEEE---C---CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC--EEEE------------------------EEC
Confidence 1110 0 124678999999876455555667889999986311 0000 000
Q ss_pred cCCCeEEEEECCCCCEEEEEEC---CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE-EeCCCeEEEEECCCc
Q 008939 298 CQGSINSIAFSTDGTYLATVGR---DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT-GGEDDLVQVWSMEDR 373 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s-gs~dg~I~vwd~~~~ 373 (548)
.......++++|++..|+.+.. .+.|.++++..................+++++++..|+. -...+.|.++|++..
T Consensus 120 ~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~ 199 (267)
T 1npe_A 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP 199 (267)
T ss_dssp SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence 1145688999997666665554 368888888633221111122345788999998766655 445689999999865
Q ss_pred eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC--CCCCceecCCC
Q 008939 374 KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP--LGGSPTFSTGS 449 (548)
Q Consensus 374 ~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~--~~~~~~~~~~~ 449 (548)
.....+.+ ......++.. ++ .++++....+.|..+|..+++.+..+.... ....+++.+++
T Consensus 200 ~~~~~~~~-~~~P~gi~~d--------~~------~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 200 GRRKVLEG-LQYPFAVTSY--------GK------NLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp EEEEEEEC-CCSEEEEEEE--------TT------EEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred ceEEEecC-CCCceEEEEe--------CC------EEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 44433332 2334566653 33 566666677899999999999888876432 24455555443
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.04 E-value=1.2e-07 Score=94.78 Aligned_cols=297 Identities=12% Similarity=0.054 Sum_probs=172.3
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCC---cccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDG---SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 264 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~ 264 (548)
+..|++++.++.|+.+|.++ ++.+.... ..... ......+.+.-.. ++. .+++++.++.|+.+|..++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~t-----G~~~W~~~-~~~~~~~~~~~~~~~~~~~~~-~~~-~v~v~~~~g~l~a~d~~tG- 123 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADD-----GKEIWSVS-LAEKDGWFSKEPALLSGGVTV-SGG-HVYIGSEKAQVYALNTSDG- 123 (376)
T ss_dssp TTEEEEECTTSEEEEEETTT-----CCEEEEEE-CCC---CCSCCCCCEEEEEEE-ETT-EEEEEETTSEEEEEETTTC-
T ss_pred CCEEEEEcCCCeEEEEEccC-----Cceeeeec-CccccccccccCcccccCceE-eCC-EEEEEcCCCEEEEEECCCC-
Confidence 55788888899999999865 23322211 10000 0001222222222 233 6888889999999998763
Q ss_pred CCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCce
Q 008939 265 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL 344 (548)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v 344 (548)
+....+.. .......... .+..+++++.++.|..+|.++++.+..........
T Consensus 124 ~~~W~~~~-------------------------~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 124 TVAWQTKV-------------------------AGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp CEEEEEEC-------------------------SSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred CEEEEEeC-------------------------CCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 22211110 0000001111 13477788889999999999999887765432211
Q ss_pred -----EEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCC----------e-EEEEEecCCCCCCCCCCcccee
Q 008939 345 -----LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW----------V-SGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 345 -----~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~----------V-~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
...... +..++++..++.|..+|.++++.+......... + ...... ++
T Consensus 177 ~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--------~~------ 240 (376)
T 3q7m_A 177 SLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--------NG------ 240 (376)
T ss_dssp --CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--------TT------
T ss_pred eecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--------CC------
Confidence 112222 346788888999999999999877655422100 0 011111 33
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee-cCCCC
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR-VHTEP 487 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~-~h~~~ 487 (548)
.+..++.++.|..+|.++++.+....... ... ....+..+.++..+..+..+|..+.+.+.... .....
T Consensus 241 -~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~--------~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 310 (376)
T 3q7m_A 241 -VVFALAYNGNLTALDLRSGQIMWKRELGS-VND--------FIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRL 310 (376)
T ss_dssp -EEEEECTTSCEEEEETTTCCEEEEECCCC-EEE--------EEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSC
T ss_pred -EEEEEecCcEEEEEECCCCcEEeeccCCC-CCC--------ceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCc
Confidence 57777889999999999999887655311 111 11224555666667788888888887776655 22333
Q ss_pred eeEEEEeCCeEEEEECCCeEEEEeCCCCCcccc-CC-CCcEE-EecCCCCceEeeecccccc
Q 008939 488 LSGLIFTQESVLTVCREGHIKIWMRPGVAESQS-SS-SETVL-STSSKDKPLLSSKVVTSSY 546 (548)
Q Consensus 488 V~~l~fspd~l~t~s~Dg~I~iW~~~~~~~~~~-~~-~~~v~-~~s~d~~~l~s~~~~g~~~ 546 (548)
+.......+.|+.++.+|.|..+|..+++..-. .. ...+. .....+..|..++..|.+|
T Consensus 311 ~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~ 372 (376)
T 3q7m_A 311 LTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVY 372 (376)
T ss_dssp CCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEE
T ss_pred ccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEE
Confidence 445555667899999999999999887663211 11 12222 1112344566666666554
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.01 E-value=2e-07 Score=100.59 Aligned_cols=295 Identities=14% Similarity=0.152 Sum_probs=171.2
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC------CCcEEEEEcC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA------DGNLYVYEKS 261 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~------dg~v~vwd~~ 261 (548)
+..|++++.++.|+.+|.++ ++.+..... ..+.. ....+..--...++ .++++.. +|.|+.||..
T Consensus 128 ~~~v~v~~~dg~l~alD~~t-----G~~~W~~~~-~~~~~-~~~~~~~~p~v~~~--~v~v~~~~~~~~~~g~v~a~D~~ 198 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAAT-----GKEVWHQNT-FEGQK-GSLTITGAPRVFKG--KVIIGNGGAEYGVRGYITAYDAE 198 (677)
T ss_dssp TTEEEEECTTSEEEEEETTT-----CCEEEEEET-TTTCC-SSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETT
T ss_pred CCEEEEEcCCCEEEEEECCC-----CCEEeeecC-CcCcC-cCcccccCcEEECC--EEEEEecccccCCCCEEEEEECC
Confidence 45789999999999999876 344332211 10000 00111110011133 4555543 6899999998
Q ss_pred CCCCCCCCcccccccc-eeeeecCCCCCCCCeeEee---------ecCCCeEEEEECCCCCEEEEEECCC----------
Q 008939 262 KDGAGDSSFPVIKDQT-QFSVAHPRYSKSNPIARWH---------ICQGSINSIAFSTDGTYLATVGRDG---------- 321 (548)
Q Consensus 262 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~h~~~v~~~~~sp~g~~l~s~~~dg---------- 321 (548)
+ ++....+....... ....... .......|. ........++++|++.+|+.+..++
T Consensus 199 t-G~~~W~~~~~~~~~~~~~~~~~---~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~ 274 (677)
T 1kb0_A 199 T-GERKWRWFSVPGDPSKPFEDES---MKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSP 274 (677)
T ss_dssp T-CCEEEEEESSCCCTTSCCSSHH---HHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHST
T ss_pred C-CcEEEEeccCCCCccccccccc---cccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCc
Confidence 7 44333332211100 0000000 000000011 1122334678899888888887664
Q ss_pred ---------eEEEEeCCCCeEEEeeee--cC-------CceEEEEEccCC---CEEEEEeCCCeEEEEECCCceeEEecc
Q 008939 322 ---------YLRVFDYSKEQLICGGKS--YY-------GALLCCAWSMDG---KYILTGGEDDLVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 322 ---------~v~vwd~~~~~~~~~~~~--~~-------~~v~~l~~spdg---~~l~sgs~dg~I~vwd~~~~~~~~~~~ 380 (548)
.|..+|.++++.+..++. |. .....+....+| +.++.++.+|.|+++|.++++.+..+.
T Consensus 275 ~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 275 KGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp TCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 599999999999887654 21 112233444578 678999999999999999999876554
Q ss_pred CC-CCCeE----------------------------------EEEEecCCCCCCCCCCccceeEEEEEEeC---------
Q 008939 381 GH-NSWVS----------------------------------GVAFDSYWSQPNSDGTAETVMYRFGSVGQ--------- 416 (548)
Q Consensus 381 ~h-~~~V~----------------------------------~v~~~p~~~~~~~dg~~~~~~~~l~s~~~--------- 416 (548)
.. ..+.. .++|+| ++ .++.+...
T Consensus 355 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-------~~------~~~yv~~~~~~~~~~~~ 421 (677)
T 1kb0_A 355 FVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-------QT------GLVYLPAQNVPVNLMDD 421 (677)
T ss_dssp SSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-------TT------TEEEEEEEECCCEEEEC
T ss_pred ccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-------CC------CEEEEeChhcceeeecc
Confidence 21 11111 356666 54 24443322
Q ss_pred ----------------------------------CCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecc
Q 008939 417 ----------------------------------DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 462 (548)
Q Consensus 417 ----------------------------------Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~ 462 (548)
.+.|..||+.+++.+..+....+.....+... +..+..++
T Consensus 422 ~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~------g~~v~~g~ 495 (677)
T 1kb0_A 422 KKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTA------GNVVFQGT 495 (677)
T ss_dssp TTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEET------TTEEEEEC
T ss_pred cccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeC------CCEEEEEC
Confidence 27899999999999988876443333333322 34566778
Q ss_pred cCCCCceeecCCCCceEEeecCCC-CeeEEEEeCCe---EEEEEC----------------CCeEEEEeCCC
Q 008939 463 LQPAPSMRDVPKLSPLVAHRVHTE-PLSGLIFTQES---VLTVCR----------------EGHIKIWMRPG 514 (548)
Q Consensus 463 ~~~~~~~~d~~~~~~~~~~~~h~~-~V~~l~fspd~---l~t~s~----------------Dg~I~iW~~~~ 514 (548)
.++.++.+|..+.+.+..+..... .-.-+.|..++ ++..+. .+.+..|.++.
T Consensus 496 ~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 496 ADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 889999999999999988875432 22345565552 443333 46788888774
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.95 E-value=3.3e-07 Score=99.17 Aligned_cols=306 Identities=12% Similarity=0.082 Sum_probs=172.2
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccC----cce-EEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNN----SRC-TSVTWVPGGDGAFVVGHADGNLYVYEKSK 262 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~----~~v-~~l~~~p~~~~~l~s~~~dg~v~vwd~~~ 262 (548)
+..|++++.++.|+.+|.++ ++.+..... ........ ..+ ..+.. .+. .+++++.|+.|+.+|..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~t-----G~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~--~~g-~v~v~~~dg~l~AlDa~T 140 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARD-----GRLIWKYDP-QSDRHRAGEACCDAVNRGVAV--WKG-KVYVGVLDGRLEAIDAKT 140 (689)
T ss_dssp TTEEEEECGGGCEEEEETTT-----CCEEEEECC-CCCGGGGGGCTTCSCCCCCEE--ETT-EEEEECTTSEEEEEETTT
T ss_pred CCEEEEEcCCCeEEEEECCC-----CceeEEEcC-CCCccccccccccCCCCccEE--ECC-EEEEEccCCEEEEEECCC
Confidence 55788888899999999876 344332211 00000000 000 11222 234 788899999999999987
Q ss_pred CCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC---CCCEEEEEE------CCCeEEEEeCCCCeE
Q 008939 263 DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST---DGTYLATVG------RDGYLRVFDYSKEQL 333 (548)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp---~g~~l~s~~------~dg~v~vwd~~~~~~ 333 (548)
++....+....+. .....+..+| ++. ++++. .++.|..||.++|++
T Consensus 141 -G~~~W~~~~~~~~-----------------------~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~ 195 (689)
T 1yiq_A 141 -GQRAWSVDTRADH-----------------------KRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKE 195 (689)
T ss_dssp -CCEEEEEECCSCT-----------------------TSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred -CCEeeeecCcCCC-----------------------CCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcE
Confidence 4333322211000 0000111112 443 44443 378999999999999
Q ss_pred EEeeeecC-------------------------------CceEEEEEccCCCEEEEEeCCCe------------------
Q 008939 334 ICGGKSYY-------------------------------GALLCCAWSMDGKYILTGGEDDL------------------ 364 (548)
Q Consensus 334 ~~~~~~~~-------------------------------~~v~~l~~spdg~~l~sgs~dg~------------------ 364 (548)
+..+.... .....++++|+..+++.+..++.
T Consensus 196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~ 275 (689)
T 1yiq_A 196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLS 275 (689)
T ss_dssp EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTT
T ss_pred EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 87764210 01125788998889999988764
Q ss_pred -EEEEECCCceeEEeccC--CCC-------CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 365 -VQVWSMEDRKVVAWGEG--HNS-------WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 365 -I~vwd~~~~~~~~~~~~--h~~-------~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
|..||.++++.+-.++. |.. .+....... +|. ....++.++.+|.|+++|.++++++...
T Consensus 276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-------~G~---~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-------DGK---PRKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-------TTE---EEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-------CCc---EEEEEEEECCCCeEEEEECCCCCEeccc
Confidence 99999999998866653 321 122222222 451 1136888999999999999999998654
Q ss_pred ecCCCC----------------------------------------CCceecCCCCccc------------------cC-
Q 008939 435 RRGPLG----------------------------------------GSPTFSTGSQSAH------------------WD- 455 (548)
Q Consensus 435 ~~~~~~----------------------------------------~~~~~~~~~~~~~------------------~d- 455 (548)
+..+.. ..+++.+...... +.
T Consensus 346 ~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~ 425 (689)
T 1yiq_A 346 GIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNP 425 (689)
T ss_dssp ESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCS
T ss_pred cccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccc
Confidence 432100 0022222211000 00
Q ss_pred --Ceeeecc------------------cCCCCceeecCCCCceEEeecCCCCeeEEEEeC--CeEEEEECCCeEEEEeCC
Q 008939 456 --NVCPVGT------------------LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ--ESVLTVCREGHIKIWMRP 513 (548)
Q Consensus 456 --~~~~~g~------------------~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp--d~l~t~s~Dg~I~iW~~~ 513 (548)
..+..+. .++.+..||+.+.+.+-.+..+.. +..-.+.. ..++.++.||.|+.||..
T Consensus 426 ~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 426 FKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp CTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred cccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECC
Confidence 0000010 124477789999888887776543 33323333 358889999999999998
Q ss_pred CCCcc-ccCCC----CcEEEecCCCCceEe
Q 008939 514 GVAES-QSSSS----ETVLSTSSKDKPLLS 538 (548)
Q Consensus 514 ~~~~~-~~~~~----~~v~~~s~d~~~l~s 538 (548)
++++. ..... ...+.++.||+..++
T Consensus 505 tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 505 TGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp TCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 87732 22111 223456788875444
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.92 E-value=2.1e-10 Score=114.74 Aligned_cols=195 Identities=13% Similarity=0.079 Sum_probs=101.1
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
+..+++++.||.|+.||..+ ++.+... .. ..+.+..+..++. ++++++.||.|+.||..++ +..
T Consensus 9 ~~~v~~gs~dg~v~a~d~~t-----G~~~W~~-~~--------~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG-~~~ 72 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRT-----GSIKWTL-KE--------DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNN-EGL 72 (369)
T ss_dssp TTEEEEEETTSEEEEEETTT-----CCEEEEE-EC--------CCSCCCC-----C-CEEECTTTCCEEEC------CCS
T ss_pred CCEEEEEcCCCEEEEEECCC-----CCEEEEe-cC--------CCceecceEcCCC-EEEEeCCCCEEEEEECCCC-cee
Confidence 66899999999999999876 3333221 11 2333444456666 6777889999999998763 222
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEE
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCC 347 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 347 (548)
..++..... .. ...++ +. ++..|++++.|+.|+.||.++|+.+..+..+. ..
T Consensus 73 w~~~~~~~~-~~------------------~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~ 124 (369)
T 2hz6_A 73 TKLPFTIPE-LV------------------QASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----AD 124 (369)
T ss_dssp EECSCCHHH-HH------------------TTCSC----C------CCCCEEEEEEEEECCC------------------
T ss_pred eeeeccCcc-cc------------------ccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cc
Confidence 221110000 00 00111 11 34467778889999999999999987776543 24
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 348 ~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
.++|++..+++++.|+.|+.||.++++.+..+..+. .....+.+ ....++ .++.++.|+.|..||.++
T Consensus 125 ~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~---~~~~~~-------~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 125 SLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPED---DVDYKM-------SHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp --------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCC---CTTCCC-------CEEEEETSCEEEEECTTT
T ss_pred cccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccC---Cccccc-------eEEEECCCCEEEEEECCC
Confidence 566788899999999999999999998765543211 11111221 000013 466788899999999999
Q ss_pred CeEEeeeecCC
Q 008939 428 DEIVVPLRRGP 438 (548)
Q Consensus 428 ~~~~~~~~~~~ 438 (548)
++.+...+...
T Consensus 193 G~~~W~~~~~~ 203 (369)
T 2hz6_A 193 GDVLWIQNYAS 203 (369)
T ss_dssp CCEEEEEECSS
T ss_pred CcEEEEecCCC
Confidence 99988876533
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.90 E-value=2.2e-07 Score=92.74 Aligned_cols=244 Identities=10% Similarity=0.115 Sum_probs=147.3
Q ss_pred EEEEe--cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC
Q 008939 235 SVTWV--PGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT 312 (548)
Q Consensus 235 ~l~~~--p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~ 312 (548)
+..++ ++.+.+++.+..++.|+|+|+.++.........++. ..+.. +........+...|+|
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~-~~~~~--------------~~g~s~Ph~~~~~pdG- 149 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEP-EEVKK--------------VSGYSRLHTVHCGPDA- 149 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECH-HHHHH--------------HHCEEEEEEEEECSSC-
T ss_pred ccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeech-hhccc--------------ccCCCcccceeECCCe-
Confidence 33456 778866777888999999999753221111111100 00000 0000134567788999
Q ss_pred EEEEEECC------CeEEEEeCCCCeEEEeeeecCC---ceEEEEEccCCCEEEEEe-------------------CCCe
Q 008939 313 YLATVGRD------GYLRVFDYSKEQLICGGKSYYG---ALLCCAWSMDGKYILTGG-------------------EDDL 364 (548)
Q Consensus 313 ~l~s~~~d------g~v~vwd~~~~~~~~~~~~~~~---~v~~l~~spdg~~l~sgs-------------------~dg~ 364 (548)
+++++..+ +.|.++|.++.+.+..+..... --..+-|+|+++.+++.. .++.
T Consensus 150 i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~ 229 (462)
T 2ece_A 150 IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR 229 (462)
T ss_dssp EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE
T ss_pred EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCE
Confidence 66666555 7899999999999888763222 234578899999888874 3689
Q ss_pred EEEEECCCceeEEeccCC--CCCeEEEEE--ecCCCCCCCCCCccceeEEEEEEe-----CCCeEEEEECCCCeEEeeee
Q 008939 365 VQVWSMEDRKVVAWGEGH--NSWVSGVAF--DSYWSQPNSDGTAETVMYRFGSVG-----QDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~h--~~~V~~v~~--~p~~~~~~~dg~~~~~~~~l~s~~-----~Dg~i~lwd~~~~~~~~~~~ 435 (548)
|.+||+.+++.+.++..- ......|.| +| +|. +.++++- .+++|.+|....++... .+
T Consensus 230 V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-------dg~-----~aYV~~e~~~~~Lss~V~v~~~d~g~~~~-~~ 296 (462)
T 2ece_A 230 IHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-------TKL-----MGFINMVVSLKDLSSSIWLWFYEDGKWNA-EK 296 (462)
T ss_dssp EEEEETTTTEEEEEEESCTTEEEEEEEEECSST-------TCC-----EEEEEEEEETTTCCEEEEEEEEETTEEEE-EE
T ss_pred EEEEECCCCcEeeEEecCCCCCccceeEeeECC-------CCC-----EEEEEEeeeccCCCceEEEEEecCCceeE-EE
Confidence 999999999888877642 133455656 88 882 3445555 67889888876543211 11
Q ss_pred cCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCc---e----EEeecCCCCeeEEEEeCCe---EEEEECCC
Q 008939 436 RGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSP---L----VAHRVHTEPLSGLIFTQES---VLTVCREG 505 (548)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~---~----~~~~~h~~~V~~l~fspd~---l~t~s~Dg 505 (548)
. .|++.... + ..+.+-......|.+++|+ .++.-..+
T Consensus 297 v---------------------------------Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d 343 (462)
T 2ece_A 297 V---------------------------------IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIG 343 (462)
T ss_dssp E---------------------------------EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTT
T ss_pred E---------------------------------EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCC
Confidence 0 00000000 0 0000002347889999984 45555679
Q ss_pred eEEEEeCCCCC-ccc-----cC-------C--------CCcEEEecCCCCceEeee
Q 008939 506 HIKIWMRPGVA-ESQ-----SS-------S--------SETVLSTSSKDKPLLSSK 540 (548)
Q Consensus 506 ~I~iW~~~~~~-~~~-----~~-------~--------~~~v~~~s~d~~~l~s~~ 540 (548)
.|.++|+.... ... .+ + ...-+.++|||++|.+++
T Consensus 344 ~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 344 EVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999985321 110 11 0 245568999999999988
No 233
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.89 E-value=2e-05 Score=86.93 Aligned_cols=326 Identities=12% Similarity=0.093 Sum_probs=190.7
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe--------cCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH--------FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~--------~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
...|.++..+++|.+.+...+ .|.+||..+. .+..+. .....+.++..+++ + .|.+|+.++-|.
T Consensus 262 ~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~---~~~~~~~~~~~~~~l~~~~i~~i~~D~~---g-~lWigt~~~Gl~ 333 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTD---SFASYSSNPVENGSLSQRSVRSIFMDSQ---G-GMWLGTYFGGLN 333 (795)
T ss_dssp CSBEEEEEECTTSCEEEEESS-CEEEEETTTT---EEEEECCCTTSTTSCSSSCEEEEEECTT---S-CEEEEESSSCEE
T ss_pred CCeEEEEEEcCCCCEEEEeCC-hhheEcCCCC---eEEEEecCCCCCCCCCCCcEEEEEEeCC---c-CEEEEECCCCeE
Confidence 456888999999887766544 7889997653 233332 12346788888776 2 488899988899
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
.|+.... ..................|.++...+++. |..|..++-|..||..+..- ..+.....
T Consensus 334 ~~~~~~~------~~~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~--~~~~~~~~------ 397 (795)
T 4a2l_A 334 YYHPIRN------RFKNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRF--TSYTLQED------ 397 (795)
T ss_dssp EECGGGG------SSEEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCE--EEECCC--------
T ss_pred EeCCCcc------cceEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcE--EEEecCCC------
Confidence 9986541 11111100111122456799999888876 77788887899998764210 00000000
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee----ecCCceEEEEEccCCCEEE
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK----SYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~----~~~~~v~~l~~spdg~~l~ 357 (548)
.+- .......|.++...+++++|..|+.++-|.+||..+++...... .....|.++...++|.+.+
T Consensus 398 --------~~~--~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi 467 (795)
T 4a2l_A 398 --------ESA--RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL 467 (795)
T ss_dssp --------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE
T ss_pred --------Ccc--cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE
Confidence 000 00112568999998888857777887789999998876543221 1245789999988887544
Q ss_pred EEeCCCeEEEEECCCceeEEecc------CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEE
Q 008939 358 TGGEDDLVQVWSMEDRKVVAWGE------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~~~~~~~~------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~ 431 (548)
|+. +-|.+||.++++...... .....|.++..++ +| . |..++. +-|..||..+++.
T Consensus 468 -gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-------~g------~-lWigt~-~Gl~~~~~~~~~~- 529 (795)
T 4a2l_A 468 -GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-------HK------R-LWIGGE-EGLSVFKQEGLDI- 529 (795)
T ss_dssp -EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-------TC------C-EEEEES-SCEEEEEEETTEE-
T ss_pred -Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-------CC------C-EEEEeC-CceEEEeCCCCeE-
Confidence 444 458889988776543321 1246789999887 77 3 444444 5688899887765
Q ss_pred eeeecC--CC----CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec----CCCCeeEEEEeCCe-EEE
Q 008939 432 VPLRRG--PL----GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV----HTEPLSGLIFTQES-VLT 500 (548)
Q Consensus 432 ~~~~~~--~~----~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~----h~~~V~~l~fspd~-l~t 500 (548)
.+... .. .....+..+. +..+-+++.. .+..+|..... ...+.. ....|.++...+++ |..
T Consensus 530 -~~~~~~~~~~l~~~~i~~i~~d~-----~g~lWigT~~-Gl~~~d~~~~~-~~~~~~~~gl~~~~i~~i~~d~~g~lWi 601 (795)
T 4a2l_A 530 -QKASILPVSNVTKLFTNCIYEAS-----NGIIWVGTRE-GFYCFNEKDKQ-IKRYNTTNGLPNNVVYGILEDSFGRLWL 601 (795)
T ss_dssp -EECCCSCSCGGGGSCEEEEEECT-----TSCEEEEESS-CEEEEETTTTE-EEEECGGGTCSCSCEEEEEECTTSCEEE
T ss_pred -EEecCCCCCCCCCCeeEEEEECC-----CCCEEEEeCC-CceeECCCCCc-EEEeCCCCCCchhheEEEEECCCCCEEE
Confidence 22210 00 0001111111 2223333333 45556654332 222211 13468888888764 666
Q ss_pred EECCCeEEEEeCCCCC
Q 008939 501 VCREGHIKIWMRPGVA 516 (548)
Q Consensus 501 ~s~Dg~I~iW~~~~~~ 516 (548)
++.. -|..|+..+..
T Consensus 602 ~t~~-Gl~~~~~~~~~ 616 (795)
T 4a2l_A 602 STNR-GISCFNPETEK 616 (795)
T ss_dssp EETT-EEEEEETTTTE
T ss_pred EcCC-ceEEEcCCCCc
Confidence 6654 45667876554
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.85 E-value=4.8e-10 Score=112.16 Aligned_cols=204 Identities=10% Similarity=0.020 Sum_probs=107.2
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC
Q 008939 242 GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG 321 (548)
Q Consensus 242 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg 321 (548)
+. .+++++.||.|+.||..+ ++....+ .. +.+.+..+..++..+++++.|+
T Consensus 9 ~~-~v~~gs~dg~v~a~d~~t-G~~~W~~-------------------------~~--~~~~s~p~~~~g~~~v~~s~dg 59 (369)
T 2hz6_A 9 ET-LLFVSTLDGSLHAVSKRT-GSIKWTL-------------------------KE--DPVLQVPTHVEEPAFLPDPNDG 59 (369)
T ss_dssp TT-EEEEEETTSEEEEEETTT-CCEEEEE-------------------------EC--CCSCCCC-----CCEEECTTTC
T ss_pred CC-EEEEEcCCCEEEEEECCC-CCEEEEe-------------------------cC--CCceecceEcCCCEEEEeCCCC
Confidence 44 789999999999999886 3222211 11 3333444455677777778999
Q ss_pred eEEEEeCCCCeEEEeeeecCC-ceE-EEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCC
Q 008939 322 YLRVFDYSKEQLICGGKSYYG-ALL-CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPN 399 (548)
Q Consensus 322 ~v~vwd~~~~~~~~~~~~~~~-~v~-~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 399 (548)
.|+.||.++++.+..+..+.. .+. +..+. ++..+++++.|+.|+.||.++++.+..+..+. .+.++|
T Consensus 60 ~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p------ 128 (369)
T 2hz6_A 60 SLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSP------ 128 (369)
T ss_dssp CEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------
T ss_pred EEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccc------
Confidence 999999999887665543211 110 01111 34567888889999999999999887776543 234455
Q ss_pred CCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceE
Q 008939 400 SDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV 479 (548)
Q Consensus 400 ~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~ 479 (548)
++ ..+++++.|+.|+.||.++++.+..+.... ...+.+..+. ..+..+.++..++.+..+|..+++.+.
T Consensus 129 -~~------~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~---~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 129 -ST------SLLYLGRTEYTITMYDTKTRELRWNATYFD-YAASLPEDDV---DYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp -----------EEEEEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCT---TCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred -cC------CEEEEEecCCEEEEEECCCCCEEEeEeccc-ccCccccCCc---cccceEEEECCCCEEEEEECCCCcEEE
Confidence 55 478888999999999999999877665321 1112221111 123455566677788888888887776
Q ss_pred EeecCCCCeeE-EEEeCCe
Q 008939 480 AHRVHTEPLSG-LIFTQES 497 (548)
Q Consensus 480 ~~~~h~~~V~~-l~fspd~ 497 (548)
.+.. ..++.. ..+++++
T Consensus 198 ~~~~-~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 198 IQNY-ASPVVAFYVWQREG 215 (369)
T ss_dssp EEEC-SSCEEEEEECTTSS
T ss_pred EecC-CCceEEEEEecCCc
Confidence 6653 344433 3344444
No 235
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.85 E-value=3.8e-05 Score=84.76 Aligned_cols=326 Identities=13% Similarity=0.108 Sum_probs=192.1
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEec--------CCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHF--------SNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~--------~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
...+..+..+.+|.+.+...++.|.+||..+.. +..+.. ....+.++..+++ + .|.+|+.+ -|.
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~---~~~~~~~~~~~~~l~~~~i~~i~~d~~---g-~lWigt~~-Gl~ 285 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKE---IKNYLHSPSNPKSISSNYIRSLAMDSQ---N-RLWIGTFN-DLN 285 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTE---EEEECCCTTCTTSCSCSBEEEEEECTT---S-CEEEEESS-CEE
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCe---EEEeecCCCCccccCCCeEEEEEEcCC---C-CEEEEeCC-hhh
Confidence 456777888888877666555679999977532 333322 2345788888765 3 47777776 588
Q ss_pred EEEeeecccccccceeeeeee-ccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHY-NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
+||.... ........ ..........|.+|...+++. |..|..++-|..|+..... ...+......
T Consensus 286 ~~~~~~~------~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~---- 351 (795)
T 4a2l_A 286 IYHEGTD------SFASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNR--FKNIRNIPYK---- 351 (795)
T ss_dssp EEETTTT------EEEEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGS--SEEECCCTTS----
T ss_pred eEcCCCC------eEEEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCccc--ceEEcCCCCC----
Confidence 8886541 11111100 011223457899999998886 7788888889999865421 0000000000
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee--------cCCceEEEEEccC
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--------YYGALLCCAWSMD 352 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~--------~~~~v~~l~~spd 352 (548)
+ ......|.++...++|. |..|+.++-|..||..+++....... ....|.++...++
T Consensus 352 ---------~-----~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 352 ---------N-----SLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp ---------S-----SCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT
T ss_pred ---------C-----CCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC
Confidence 0 00125689999988886 45577777799999987765432211 1356899999889
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEEecc----CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKVVAWGE----GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~~~~~~----~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+++|.+|+.++-|.+||.++++...... .+...|.++..++ +| . |..++. +-|.+||..++
T Consensus 417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-------~g------~-lwigt~-~Gl~~~~~~~~ 481 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-------EG------N-LWLGTL-SALVRFNPEQR 481 (795)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-------SS------C-EEEEES-SCEEEEETTTT
T ss_pred CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-------CC------C-EEEEec-CceeEEeCCCC
Confidence 8867778887889999998876543322 2346799999887 77 3 444444 45889998887
Q ss_pred eEEeeeecC---C--CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee-------cCCCCeeEEEEeCC
Q 008939 429 EIVVPLRRG---P--LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR-------VHTEPLSGLIFTQE 496 (548)
Q Consensus 429 ~~~~~~~~~---~--~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~-------~h~~~V~~l~fspd 496 (548)
+........ . ......+..+. +..+-+++. ..+..++...... .+. .....|.+|...++
T Consensus 482 ~~~~~~~~~~~~~~~~~~i~~i~~d~-----~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~ 553 (795)
T 4a2l_A 482 SFTTIEKEKDGTPVVSKQITTLFRDS-----HKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASN 553 (795)
T ss_dssp EEEECCBCTTCCBCCCCCEEEEEECT-----TCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTT
T ss_pred eEEEccccccccccCCceEEEEEECC-----CCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCC
Confidence 654322110 0 00001111111 222323333 3455555433322 111 23457889988887
Q ss_pred e-EEEEECCCeEEEEeCCCCC
Q 008939 497 S-VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 497 ~-l~t~s~Dg~I~iW~~~~~~ 516 (548)
+ |..++.. -|..||..+..
T Consensus 554 g~lWigT~~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 554 GIIWVGTRE-GFYCFNEKDKQ 573 (795)
T ss_dssp SCEEEEESS-CEEEEETTTTE
T ss_pred CCEEEEeCC-CceeECCCCCc
Confidence 5 6666665 56778876554
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.82 E-value=5.1e-07 Score=97.44 Aligned_cols=257 Identities=12% Similarity=0.136 Sum_probs=152.0
Q ss_pred CCEEEEecCC-eEEEEEccCCCCCCeEEEecC-CCC-ceEEEecCCCCCCceEEEEEc------CCcEEEEEeeeccccc
Q 008939 142 GTYIIFNVGD-AIFISDLNSQDKDPIKSIHFS-NSN-PVCHAFDQDAKDGHDLLIGLN------SGDVYSVSLRQQLQDV 212 (548)
Q Consensus 142 g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~-~~~-~~~~~~~p~~~~~~~l~~g~~------dg~I~iwdl~~~~~~~ 212 (548)
+..++++..+ .|+.+|..+++ .+-..... ... ...+.-.|.. .+..++++.. +|.|+.||.++
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~t----- 199 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGK--EVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAET----- 199 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCC--EEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTT-----
T ss_pred CCEEEEEcCCCEEEEEECCCCC--EEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCC-----
Confidence 4455555544 89999998865 66555543 100 0000011110 1345666664 68899999876
Q ss_pred ccceeeeeeeccCC--------------------c-----ccCcceEEEEEecCCCcEEEEEeCCC--------------
Q 008939 213 GKKLVGAHHYNKDG--------------------S-----VNNSRCTSVTWVPGGDGAFVVGHADG-------------- 253 (548)
Q Consensus 213 ~~~~~~~~~~~~~~--------------------~-----~~~~~v~~l~~~p~~~~~l~s~~~dg-------------- 253 (548)
++.+.......... . ........+++.|++. +++.+..++
T Consensus 200 G~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd 278 (677)
T 1kb0_A 200 GERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGD 278 (677)
T ss_dssp CCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCC
T ss_pred CcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCC
Confidence 33332211100000 0 0111224678899888 777777664
Q ss_pred -----cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC---CEEEEEECCCeEEE
Q 008939 254 -----NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG---TYLATVGRDGYLRV 325 (548)
Q Consensus 254 -----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g---~~l~s~~~dg~v~v 325 (548)
.|+.+|.++ ++....++..... .+ .+.. ......+....+| ..|+.++.+|.|.+
T Consensus 279 ~~~~~sv~AlD~~T-G~~~W~~~~~~~d-~w--------------d~~~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~ 341 (677)
T 1kb0_A 279 NLYLASIVALDPDT-GKYKWHYQETPGD-NW--------------DYTS-TQPMILADIKIAGKPRKVILHAPKNGFFFV 341 (677)
T ss_dssp CTTTTEEEEECTTT-CCEEEEEESSTTC-CS--------------CCCC-CSCCEEEEEEETTEEEEEEEECCTTSEEEE
T ss_pred CeeeEEEEEEECCC-CCEEEEEecCCCc-cc--------------cccc-CCCcEEEecccCCcEeeEEEEECCCCEEEE
Confidence 488888776 3333333221100 00 0000 0122223333467 67889999999999
Q ss_pred EeCCCCeEEEeeeecC----------C-ce------------------------EEEEEccCCCEEEEEeCC--------
Q 008939 326 FDYSKEQLICGGKSYY----------G-AL------------------------LCCAWSMDGKYILTGGED-------- 362 (548)
Q Consensus 326 wd~~~~~~~~~~~~~~----------~-~v------------------------~~l~~spdg~~l~sgs~d-------- 362 (548)
+|.++++++...+... + ++ ..++++|+..++++...+
T Consensus 342 lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~ 421 (677)
T 1kb0_A 342 LDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDD 421 (677)
T ss_dssp EETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEEC
T ss_pred EECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecc
Confidence 9999999887654211 0 01 146889998888776432
Q ss_pred -----------------------------------CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 363 -----------------------------------DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 363 -----------------------------------g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
+.|..||+.+++.+-.+. +...+....+.. ++
T Consensus 422 ~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~-------~g----- 488 (677)
T 1kb0_A 422 KKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTT-------AG----- 488 (677)
T ss_dssp TTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEE-------TT-----
T ss_pred cccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEe-------CC-----
Confidence 789999999999877665 333444444544 44
Q ss_pred eEEEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 408 MYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
.+++.++.|+.|++||+++++++..+....
T Consensus 489 -~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 489 -NVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp -TEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred -CEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 367778999999999999999999988654
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.81 E-value=9.7e-08 Score=93.28 Aligned_cols=283 Identities=12% Similarity=0.073 Sum_probs=165.2
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
...|++++.++.|+.|| .+ ++.... .. .....+.++...+++. |+++..+ |+.||.. +...
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~-----g~~~~~-~~------~~~~~~~~~~~~~~g~--l~v~t~~--l~~~d~~--g~~~ 90 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TD-----GSVKWF-FK------SGEIIECRPSIGKDGT--IYFGSDK--VYAINPD--GTEK 90 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TT-----SCEEES-SC------GGGEEEECCEETTTTE--ECCSSCE--EEEECCC--GGGG
T ss_pred CCeEEEEcCCCEEEEEC-CC-----CcEEEE-Ee------cCCCcccceEEecCCc--EEEecCc--EEEECCC--CcEE
Confidence 34578888889999998 54 222111 00 1234456666666664 6666655 8888752 3222
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEE
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCC 347 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 347 (548)
..+.... .......+. +..|..++.++.|..+|.. ++.+.........+.++
T Consensus 91 ~~~~~~~-------------------------~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 142 (330)
T 3hxj_A 91 WRFDTKK-------------------------AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATP 142 (330)
T ss_dssp GGSCC------------------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred EEEECCC-------------------------CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeee
Confidence 2221100 111112222 4467778889999999998 77776666555556777
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 348 ~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
...+++. |..++.++.|..+|.+ ++.+..+......+.++.+.+ +| . |..++ +.|..+| .+
T Consensus 143 ~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-------~g------~-l~v~t--~~l~~~d-~~ 203 (330)
T 3hxj_A 143 IVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-------DG------T-IYFGS--DKVYAIN-PD 203 (330)
T ss_dssp EECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-------TC------C-EEEES--SSEEEEC-TT
T ss_pred EEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-------CC------E-EEEEe--CEEEEEC-CC
Confidence 7777776 6667788999999998 777666655556677777766 66 3 44444 8899999 77
Q ss_pred CeEEeeeecC-CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC-eEEEEECCC
Q 008939 428 DEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLTVCREG 505 (548)
Q Consensus 428 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd-~l~t~s~Dg 505 (548)
++.+...... .....+....+ ..+-+++.+..+..++ +....+..+......+..+.+.++ .|..++.+|
T Consensus 204 g~~~~~~~~~~~~~~~~~~~~~-------g~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~g 275 (330)
T 3hxj_A 204 GTEKWNFYAGYWTVTRPAISED-------GTIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDG 275 (330)
T ss_dssp SCEEEEECCSSCCCSCCEECTT-------SCEEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSCEEEECTTC
T ss_pred CcEEEEEccCCcceeceEECCC-------CeEEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCCeEEEecCCC
Confidence 7776655532 22333443333 2344444455555555 344444445444444555666654 588899999
Q ss_pred eEEEEeCCCCCccccCCCCc-EE--EecCCCCceEeeeccccc
Q 008939 506 HIKIWMRPGVAESQSSSSET-VL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 506 ~I~iW~~~~~~~~~~~~~~~-v~--~~s~d~~~l~s~~~~g~~ 545 (548)
.|..+|..+........... +. .+.++++ |..++..|.+
T Consensus 276 gl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~ 317 (330)
T 3hxj_A 276 HLYAINPDGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKF 317 (330)
T ss_dssp EEEEECTTSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCE
T ss_pred CEEEECCCCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeE
Confidence 99999964332222221122 22 3445665 4455555543
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.81 E-value=3.3e-07 Score=94.68 Aligned_cols=226 Identities=11% Similarity=0.048 Sum_probs=141.9
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec-CCCeEEEEE-C-CCCCEEEEE
Q 008939 241 GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGSINSIAF-S-TDGTYLATV 317 (548)
Q Consensus 241 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~-s-p~g~~l~s~ 317 (548)
||+.+++....++.|.+.|+++. +....+... ...+..+++ + |++++++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~--------------------------~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~ 153 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVM--------------------------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCN 153 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTT--------------------------EEEEEEECSSCCSEEEEEECCSSBCSEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCc--------------------------eEeeEEeCCCCCCCcceeeeecCCCcEEEEe
Confidence 77745555556778999999872 112222221 145788888 5 899999888
Q ss_pred EC------------------CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC----------------
Q 008939 318 GR------------------DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD---------------- 363 (548)
Q Consensus 318 ~~------------------dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg---------------- 363 (548)
+. ++.+.+.|.++.+.+.++.--. ....++++|||+++++.+.+.
T Consensus 154 ~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~ 232 (595)
T 1fwx_A 154 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH 232 (595)
T ss_dssp ECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred cccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccce
Confidence 52 3579999999999888876432 356688999999999888553
Q ss_pred ----------------------eEEEEECCC--cee-EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 364 ----------------------LVQVWSMED--RKV-VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 364 ----------------------~I~vwd~~~--~~~-~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
.|.|.|.++ ++. +..+. -.....++.++| ||. +.++++..+.
T Consensus 233 v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sP-------DGk-----~v~V~~~~s~ 299 (595)
T 1fwx_A 233 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAP-------DKK-----HLCVAGKLSP 299 (595)
T ss_dssp EEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECT-------TSS-----EEEEECTTSS
T ss_pred EEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcC-------CCC-----EEEEeCCCCC
Confidence 366666666 333 33333 122445789999 993 4556666789
Q ss_pred eEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe-
Q 008939 419 RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES- 497 (548)
Q Consensus 419 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~- 497 (548)
+|.++|+.+.+... .. .++ +....+..... ......++|+|++
T Consensus 300 ~VsVid~~~~~~~~--~~-------------------------~l~--------~~~~v~~~v~v-G~gP~h~aF~~dG~ 343 (595)
T 1fwx_A 300 TVTVLDVTRFDAVF--YE-------------------------NAD--------PRSAVVAEPEL-GLGPLHTAFDGRGN 343 (595)
T ss_dssp BEEEEEGGGHHHHH--HS-------------------------CCC--------GGGGEEECCBC-CSCEEEEEECTTSE
T ss_pred eEEEEECccccccc--cc-------------------------ccC--------cccceEEEcCC-CCCcceEEECCCCe
Confidence 99999998643210 00 000 00001111111 2456889999986
Q ss_pred -EEEEECCCeEEEEeCCCC----------Cccc---cCCCCc-EE-----EecCCCCceEeeecc
Q 008939 498 -VLTVCREGHIKIWMRPGV----------AESQ---SSSSET-VL-----STSSKDKPLLSSKVV 542 (548)
Q Consensus 498 -l~t~s~Dg~I~iW~~~~~----------~~~~---~~~~~~-v~-----~~s~d~~~l~s~~~~ 542 (548)
.++.-.|++|..|++... .... .+.... .. .++|||++|+++...
T Consensus 344 aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 344 AYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred EEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 456779999999998651 1100 011111 11 567999999998765
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.78 E-value=4e-05 Score=72.26 Aligned_cols=191 Identities=9% Similarity=-0.037 Sum_probs=115.2
Q ss_pred eEEEEEcCCcEEEEEeeecccccc--cceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 190 DLLIGLNSGDVYSVSLRQQLQDVG--KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 190 ~l~~g~~dg~I~iwdl~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
+|+.+.. +.|+.+++........ ..+.. .....+..++|++++..++++-..++.|.+++++... ..
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~---------~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~ 71 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLH---------IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PT 71 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEE---------EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CE
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeec---------CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-cE
Confidence 4555553 4788888875211100 01111 0124578999999777466666667899999986421 00
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCCCeEEEeeeecCCceEE
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSKEQLICGGKSYYGALLC 346 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~v~~ 346 (548)
............+++++++..|+.+ ...+.|.++++..................
T Consensus 72 -------------------------~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~ 126 (267)
T 1npe_A 72 -------------------------TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRG 126 (267)
T ss_dssp -------------------------EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred -------------------------EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccE
Confidence 0001111467899999976555555 45678999998743322222222245789
Q ss_pred EEEccCCCEEEEEeC---CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 008939 347 CAWSMDGKYILTGGE---DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 423 (548)
Q Consensus 347 l~~spdg~~l~sgs~---dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lw 423 (548)
++++|++..|+.+.. .+.|..++++...........-.....++++| ++. +++++....+.|.++
T Consensus 127 i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~-------~~~-----~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 127 IVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA-------FSS-----QLCWVDAGTHRAECL 194 (267)
T ss_dssp EEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET-------TTT-----EEEEEETTTTEEEEE
T ss_pred EEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcC-------CCC-----EEEEEECCCCEEEEE
Confidence 999997666555543 36888888864322212222334678999998 752 566677777899999
Q ss_pred ECCCC
Q 008939 424 DLEMD 428 (548)
Q Consensus 424 d~~~~ 428 (548)
|+...
T Consensus 195 ~~~g~ 199 (267)
T 1npe_A 195 NPAQP 199 (267)
T ss_dssp ETTEE
T ss_pred ecCCC
Confidence 98753
No 240
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.76 E-value=6.6e-06 Score=80.19 Aligned_cols=240 Identities=11% Similarity=0.021 Sum_probs=142.1
Q ss_pred CCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecC--------------------CCCceEEEecCCCCCCc
Q 008939 131 TSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFS--------------------NSNPVCHAFDQDAKDGH 189 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~--------------------~~~~~~~~~~p~~~~~~ 189 (548)
..+..++++++|.++.+...+ .|+.||..++. +..+... ...+..++++++ ..
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~---~g 92 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG---FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ---NN 92 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTC---EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT---TT
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCc---eEEEecccccccccccccccchhccccCCCCceEEEcCC---CC
Confidence 345578899999855565544 89999877532 3333211 135788999973 23
Q ss_pred eEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec-CCCcEEEEEeC-----------------
Q 008939 190 DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVVGHA----------------- 251 (548)
Q Consensus 190 ~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~s~~~----------------- 251 (548)
.|+++...+.|..+|..... .+.+... . .+ ......+.+++.+ ++. +.++-..
T Consensus 93 ~l~v~d~~~~i~~~d~~~g~---~~~~~~~--~--~~-~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~ 163 (322)
T 2fp8_A 93 QLYIVDCYYHLSVVGSEGGH---ATQLATS--V--DG-VPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDK 163 (322)
T ss_dssp EEEEEETTTEEEEECTTCEE---CEEEESE--E--TT-EECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCC
T ss_pred cEEEEECCCCEEEEeCCCCE---EEEeccc--C--CC-CcccccceEEEecCCCE-EEEECCcccccccccceehcccCC
Confidence 57777666668888765310 0111100 0 00 0123578899999 887 5444322
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSK 330 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~ 330 (548)
++.|+.||..... +..+...-...+.++|+|+++.|+.+ ...+.|.+|++..
T Consensus 164 ~g~v~~~d~~~~~---------------------------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 164 TGRLIKYDPSTKE---------------------------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp CEEEEEEETTTTE---------------------------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred CceEEEEeCCCCE---------------------------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 3567777764310 11111111345679999999876666 4568999999874
Q ss_pred Ce--EEEeeeecCCceEEEEEccCCCEEEEEeC----------CCeEEEEECCCceeEEeccCC----CCCeEEEEEecC
Q 008939 331 EQ--LICGGKSYYGALLCCAWSMDGKYILTGGE----------DDLVQVWSMEDRKVVAWGEGH----NSWVSGVAFDSY 394 (548)
Q Consensus 331 ~~--~~~~~~~~~~~v~~l~~spdg~~l~sgs~----------dg~I~vwd~~~~~~~~~~~~h----~~~V~~v~~~p~ 394 (548)
.. ....+....+ ...+++.++|++.++... .+.|..+|.. ++.+..+... -..++.+++.
T Consensus 217 ~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-- 292 (322)
T 2fp8_A 217 PKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-- 292 (322)
T ss_dssp TTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE--
T ss_pred CcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe--
Confidence 21 1111111223 778999999987666544 4678888874 6666655433 2456677763
Q ss_pred CCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 395 WSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 395 ~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
++ +++++...++.|..+++...
T Consensus 293 ------~g------~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 293 ------DG------LLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp ------TT------EEEEECSSCSEEEEEEC---
T ss_pred ------CC------EEEEeecCCCceEEEecccc
Confidence 66 56777667888999987643
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.76 E-value=2.1e-06 Score=80.45 Aligned_cols=206 Identities=15% Similarity=0.156 Sum_probs=133.5
Q ss_pred CeEEEecCC-CCceEEEecCCCCCCceEEEEEc---CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec
Q 008939 165 PIKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLN---SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP 240 (548)
Q Consensus 165 ~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~---dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p 240 (548)
.+..+...+ ..+..++|+++ + .|++++. ++.|.++|+.+ .++........ ......+++.
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~d---g-~Lyvstg~~~~s~v~~iD~~t------g~v~~~i~l~~-----~~fgeGi~~~- 74 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAEN---D-TLFESTGLYGRSSVRQVALQT------GKVENIHKMDD-----SYFGEGLTLL- 74 (266)
T ss_dssp EEEEEECCTTCCEEEEEECST---T-EEEEEECSTTTCEEEEEETTT------CCEEEEEECCT-----TCCEEEEEEE-
T ss_pred EEEEEECCCCCCcccEEEeCC---C-eEEEECCCCCCCEEEEEECCC------CCEEEEEecCC-----CcceEEEEEe-
Confidence 345555333 24688999986 4 4555543 57899999986 22332222111 1112245554
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC
Q 008939 241 GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD 320 (548)
Q Consensus 241 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d 320 (548)
+..+.++.-.++.+.++|..+. +.+..+..... ....+++|++.|+++..+
T Consensus 75 -g~~lyv~t~~~~~v~viD~~t~--------------------------~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs 125 (266)
T 2iwa_A 75 -NEKLYQVVWLKNIGFIYDRRTL--------------------------SNIKNFTHQMK--DGWGLATDGKILYGSDGT 125 (266)
T ss_dssp -TTEEEEEETTCSEEEEEETTTT--------------------------EEEEEEECCSS--SCCEEEECSSSEEEECSS
T ss_pred -CCEEEEEEecCCEEEEEECCCC--------------------------cEEEEEECCCC--CeEEEEECCCEEEEECCC
Confidence 4436666667899999998762 11222211101 123355677777777778
Q ss_pred CeEEEEeCCCCeEEEeeeecC-----CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC-------------
Q 008939 321 GYLRVFDYSKEQLICGGKSYY-----GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH------------- 382 (548)
Q Consensus 321 g~v~vwd~~~~~~~~~~~~~~-----~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h------------- 382 (548)
+.|.++|.++.+.+..+.-.. ..++.+.|. +++..+....++.|.+.|.++++.+.++...
T Consensus 126 ~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~ 204 (266)
T 2iwa_A 126 SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRD 204 (266)
T ss_dssp SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTT
T ss_pred CeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccc
Confidence 999999999988777665321 246788888 7766666656889999999999988877521
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
......|+|+| ++. ++++++.....|...++...
T Consensus 205 ~~v~nGIa~~~-------~~~-----~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 205 IDVLNGIAWDQ-------ENK-----RIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CCCEEEEEEET-------TTT-----EEEEEETTCSEEEEEEEEEC
T ss_pred cCceEEEEEcC-------CCC-----EEEEECCCCCeEEEEEEecc
Confidence 13568999999 773 67888888899999887654
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.75 E-value=8.4e-06 Score=81.42 Aligned_cols=226 Identities=12% Similarity=0.037 Sum_probs=138.6
Q ss_pred EeC--CCCCEEEEecCC--eEEEEEccCCCC--CCeEEEe---c----CCCCceEEEecCCCCCCceEEEEEcC------
Q 008939 137 NFD--GKGTYIIFNVGD--AIFISDLNSQDK--DPIKSIH---F----SNSNPVCHAFDQDAKDGHDLLIGLNS------ 197 (548)
Q Consensus 137 ~~~--~~g~~l~~~~~d--~v~vwd~~~~~~--~~i~~~~---~----~~~~~~~~~~~p~~~~~~~l~~g~~d------ 197 (548)
.++ .+.++++..+.+ .|+|+|+.+... +.++.++ . ....+..+...|+ + .++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd---G-i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD---A-IYISALGNEEGEGP 163 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS---C-EEEEEEEETTSCSC
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC---e-EEEEcCCCcCCCCC
Confidence 446 888888886543 999999975422 2344442 1 1225666778887 6 55555555
Q ss_pred CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe-------------------CCCcEEEE
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-------------------ADGNLYVY 258 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-------------------~dg~v~vw 258 (548)
|.|.++|.++ .+++.... ... .....-+++.|+|+++ .+++.. .+..|.+|
T Consensus 164 g~v~vlD~~T------~~v~~~~~--~~~-~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~ 233 (462)
T 2ece_A 164 GGILMLDHYS------FEPLGKWE--IDR-GDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW 233 (462)
T ss_dssp CEEEEECTTT------CCEEEECC--SBC-TTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred CeEEEEECCC------CeEEEEEc--cCC-CCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence 6799999875 22222111 111 1123345788999999 777774 46899999
Q ss_pred EcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec-C-CCeEEEEE--CCCCCEEEEEE------CCCeEEEEeC
Q 008939 259 EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-Q-GSINSIAF--STDGTYLATVG------RDGYLRVFDY 328 (548)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~-~~v~~~~~--sp~g~~l~s~~------~dg~v~vwd~ 328 (548)
|+.+. +. +..+... . .....+.| +|++++++++. .+++|.+|..
T Consensus 234 D~~~~-k~-------------------------~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 234 DLRKR-KR-------------------------IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp ETTTT-EE-------------------------EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred ECCCC-cE-------------------------eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 99862 11 1122211 0 12334545 99999888776 4568888776
Q ss_pred CCCeEE--Ee--eeec----------------CCceEEEEEccCCCEEEEEeC-CCeEEEEECCC---ceeEEeccCCC-
Q 008939 329 SKEQLI--CG--GKSY----------------YGALLCCAWSMDGKYILTGGE-DDLVQVWSMED---RKVVAWGEGHN- 383 (548)
Q Consensus 329 ~~~~~~--~~--~~~~----------------~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~~---~~~~~~~~~h~- 383 (548)
..++.. .. +... ......|.++|||++|.++.. .+.|.+||+.+ .+.+..+.-..
T Consensus 288 d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~ 367 (462)
T 2ece_A 288 EDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGI 367 (462)
T ss_dssp ETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTT
T ss_pred cCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCe
Confidence 554321 11 1110 234678999999999888765 68999999863 34444443110
Q ss_pred -------------CCeEEEEEecCCCCCCCCCCccceeEEEEEEe
Q 008939 384 -------------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415 (548)
Q Consensus 384 -------------~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~ 415 (548)
..-..++++| || ++|..+.
T Consensus 368 ~~~~~~~~G~~~~ggPr~~~lSp-------DG------k~LyVaN 399 (462)
T 2ece_A 368 FHRADHPAGHKLTGAPQMLEISR-------DG------RRVYVTN 399 (462)
T ss_dssp TTCBCCTTSCCCCSCCCCEEECT-------TS------SEEEEEC
T ss_pred eccccccccccCCCCCCEEEEcC-------CC------CEEEEEc
Confidence 1347899999 99 5666665
No 243
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.74 E-value=4.8e-07 Score=89.59 Aligned_cols=253 Identities=8% Similarity=-0.081 Sum_probs=151.7
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE----------cCCcEEEEEeeecccccccceeeeee
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL----------NSGDVYSVSLRQQLQDVGKKLVGAHH 221 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~----------~dg~I~iwdl~~~~~~~~~~~~~~~~ 221 (548)
.|.++|..+. +.+..+.... .+ .++|+|+ +..|+++. .++.|.+||+.+ .++.....
T Consensus 47 ~vsvID~~t~--~v~~~i~vG~-~P-~i~~spD---g~~lyVan~~~~r~~~G~~~~~VsviD~~T------~~vv~~I~ 113 (368)
T 1mda_H 47 ENWVSCAGCG--VTLGHSLGAF-LS-LAVAGHS---GSDFALASTSFARSAKGKRTDYVEVFDPVT------FLPIADIE 113 (368)
T ss_dssp EEEEEETTTT--EEEEEEEECT-TC-EEEECTT---SSCEEEEEEEETTTTSSSEEEEEEEECTTT------CCEEEEEE
T ss_pred eEEEEECCCC--eEEEEEeCCC-CC-ceEECCC---CCEEEEEcccccccccCCCCCEEEEEECCC------CCEEEEEE
Confidence 7889999884 4888887554 45 8999999 77788886 367899999987 22222222
Q ss_pred eccCCc-ccCcceEEEEEecCCCcEEEEEeC--CCcEEE--EEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee
Q 008939 222 YNKDGS-VNNSRCTSVTWVPGGDGAFVVGHA--DGNLYV--YEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH 296 (548)
Q Consensus 222 ~~~~~~-~~~~~v~~l~~~p~~~~~l~s~~~--dg~v~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (548)
...... ........+.++|+++ +|+++.. +..|.+ +|+.+ . ..+.
T Consensus 114 v~~~~~~~~g~~P~~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~t----v-------------------------~~i~ 163 (368)
T 1mda_H 114 LPDAPRFSVGPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASD----D-------------------------QLTK 163 (368)
T ss_dssp ETTSCSCCBSCCTTSEEECTTSS-CEEEEECSSSCEEEEEETTTEE----E-------------------------EEEE
T ss_pred CCCccccccCCCcceEEEcCCCC-EEEEEccCCCCeEEEEEEchhh----c-------------------------eEEE
Confidence 110000 0013456899999999 6666654 456888 87754 0 0000
Q ss_pred ecCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCC-----CeEEE----eeeecCCceEEEEEccCCCEEEEEeCCCeEE
Q 008939 297 ICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSK-----EQLIC----GGKSYYGALLCCAWSMDGKYILTGGEDDLVQ 366 (548)
Q Consensus 297 ~h~~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~-----~~~~~----~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~ 366 (548)
. ..+ +.+.|++ ..+++.+.|+.+.+.|+.+ ++.+. .+.....+. . .+++..++..+. +.|.
T Consensus 164 v--~~~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~ 234 (368)
T 1mda_H 164 S--ASC--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSIL 234 (368)
T ss_dssp C--SSC--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCE
T ss_pred C--CCc--eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEE
Confidence 0 000 1123433 3344555677777778876 43321 111122333 3 566666666666 9999
Q ss_pred EEECCCce--eEEeccCC----------CCCeEEEEEecCCCCCCCCCCccceeEEEEEEe---C-----CCeEEEEECC
Q 008939 367 VWSMEDRK--VVAWGEGH----------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG---Q-----DTRLLLWDLE 426 (548)
Q Consensus 367 vwd~~~~~--~~~~~~~h----------~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~---~-----Dg~i~lwd~~ 426 (548)
+.|+.... .+..+.-. ......++|+| ||. +++++.. . +..+.++|+.
T Consensus 235 viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-------dg~-----~lyV~~~~~~~~~~~~~~~~~ViD~~ 302 (368)
T 1mda_H 235 QGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-------NTD-----GIMILTVEHSRSCLAAAENTSSVTAS 302 (368)
T ss_dssp EEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-------TTT-----EEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred EEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-------CCC-----EEEEEeccccCcccccCCCEEEEECC
Confidence 99997542 33332210 01112268999 872 3444433 2 2356699999
Q ss_pred CCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe---EEEEE-
Q 008939 427 MDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTVC- 502 (548)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~---l~t~s- 502 (548)
+.+.+..+.. ......|+|+||+ +++..
T Consensus 303 t~~vv~~i~v------------------------------------------------g~~p~gi~~s~Dg~~l~va~~~ 334 (368)
T 1mda_H 303 VGQTSGPISN------------------------------------------------GHDSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp SCCEEECCEE------------------------------------------------EEEECEEEECCSSSCEEEEEET
T ss_pred CCeEEEEEEC------------------------------------------------CCCcceEEECCCCCEEEEEccC
Confidence 9887765543 1147889999973 56666
Q ss_pred CCCeEEEEeCCCCC
Q 008939 503 REGHIKIWMRPGVA 516 (548)
Q Consensus 503 ~Dg~I~iW~~~~~~ 516 (548)
.++.|.++|+.+.+
T Consensus 335 ~~~~VsVID~~t~k 348 (368)
T 1mda_H 335 GTEVLDIYDAASDQ 348 (368)
T ss_dssp TTTEEEEEESSSCE
T ss_pred CCCeEEEEECCCCc
Confidence 59999999998766
No 244
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=5.9e-05 Score=83.02 Aligned_cols=339 Identities=11% Similarity=0.055 Sum_probs=189.6
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEE-----ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSI-----HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~-----~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
..|.++..+.+|.+.+.... .|.+||..+.....+... ......+.++..+++ + .|.+|+..+-|.++|.
T Consensus 211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~---g-~lWigt~~~Gl~~~~~ 285 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKD---N-KLWIATELNGIMILDL 285 (781)
T ss_dssp SSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTT---S-EEEEEESSSCEEEEET
T ss_pred CceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCC---C-CEEEEeCCCCeEEECC
Confidence 46788888888887766544 899999775432121111 123456788887765 2 5788888677888987
Q ss_pred eecccccccc-eeeee-eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 206 RQQLQDVGKK-LVGAH-HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 206 ~~~~~~~~~~-~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
.......... ..... ............|.+|...+++. |..|..++-|..|+..... ...+......
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~------- 354 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWGGGINFISNAPPT--FHTWSYSPTQ------- 354 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBSSCEEEECSSCCS--CEEEC----C-------
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCc--ceeeccCccc-------
Confidence 6521100000 00000 00111223567899999988886 7788877888888876421 0001000000
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee---eecCCceEEEEEccCCCEEEEEe
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG---KSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~---~~~~~~v~~l~~spdg~~l~sgs 360 (548)
... -......|.++...+++. |..|+.++-|.+||..+++..... ......|.++...+++. |..|+
T Consensus 355 ------~~~--~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt 424 (781)
T 3v9f_A 355 ------MNE--SSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGT 424 (781)
T ss_dssp ------CCS--SCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEE
T ss_pred ------ccc--CCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEe
Confidence 000 000125689999888876 445665666899998765433211 11235688998888886 45577
Q ss_pred CCCeEEEEECCCceeEEecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 361 EDDLVQVWSMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
.++-|..+|.++++...... .....|.++..++ +| .|..++. +-|..||..+++.........
T Consensus 425 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-------~g-------~lwigt~-~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 425 YLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-------NK-------KIWIGTH-AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp TTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-------TS-------EEEEEET-TEEEEEESSSSSCCEEECTTT
T ss_pred ccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-------CC-------CEEEEEC-CceEEEeCCCCeEEecccCcc
Confidence 77789999988776543321 2456799999887 77 3444555 568899988765433221110
Q ss_pred ----CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee----cCCCCeeEEEEeCCe-EEEEECCCeEEE
Q 008939 439 ----LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR----VHTEPLSGLIFTQES-VLTVCREGHIKI 509 (548)
Q Consensus 439 ----~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~----~h~~~V~~l~fspd~-l~t~s~Dg~I~i 509 (548)
......+..+. +..+-+++....+..++....+ +..+. .....|.+|...+++ |..++.+|.|..
T Consensus 490 ~~~~~~~i~~i~~d~-----~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~ 563 (781)
T 3v9f_A 490 SQLLENFVRSIAQDS-----EGRFWIGTFGGGVGIYTPDMQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCF 563 (781)
T ss_dssp SSCSCSCEEEEEECT-----TCCEEEEESSSCEEEECTTCCE-EEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEE
T ss_pred cccccceeEEEEEcC-----CCCEEEEEcCCCEEEEeCCCCe-EEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEE
Confidence 00001111111 2223334443344455543322 22221 123568888888764 777777777688
Q ss_pred EeCCCCC
Q 008939 510 WMRPGVA 516 (548)
Q Consensus 510 W~~~~~~ 516 (548)
||..+..
T Consensus 564 ~d~~~~~ 570 (781)
T 3v9f_A 564 PSARNFD 570 (781)
T ss_dssp SCTTTCC
T ss_pred ECCCCCc
Confidence 8876654
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.72 E-value=4.3e-07 Score=93.86 Aligned_cols=220 Identities=15% Similarity=0.063 Sum_probs=145.3
Q ss_pred CCCCCEEEEecCC--eEEEEEccCCCCCCeEEEecC-CCCceEEEe-c-CCCCCCceEEEEE------------------
Q 008939 139 DGKGTYIIFNVGD--AIFISDLNSQDKDPIKSIHFS-NSNPVCHAF-D-QDAKDGHDLLIGL------------------ 195 (548)
Q Consensus 139 ~~~g~~l~~~~~d--~v~vwd~~~~~~~~i~~~~~~-~~~~~~~~~-~-p~~~~~~~l~~g~------------------ 195 (548)
.+||+++..+..+ .|.+.|+++.+ .+..+... ...+..+++ . |+ +.+++++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~--~~~ii~ip~g~~phg~~~~~~p~---~~~v~~~~~~~~p~~~dg~~l~~~~~ 172 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMK--CDAILEIPNAKGIHGLRPQKWPR---SNYVFCNGEDETPLVNDGTNMEDVAN 172 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTE--EEEEEECSSCCSEEEEEECCSSB---CSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCce--EeeEEeCCCCCCCcceeeeecCC---CcEEEEecccccccCCCCcccccccc
Confidence 4588988887654 79999999843 55544432 346888887 4 77 77888884
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC---------------cEEEEEc
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG---------------NLYVYEK 260 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg---------------~v~vwd~ 260 (548)
.++.|.++|.++ .++..... -......++++|++. ++++.+.+. .|.++|.
T Consensus 173 ~~~~vtvID~~t------~~v~~qI~-------Vgg~pd~~~~spdGk-~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~ 238 (595)
T 1fwx_A 173 YVNVFTAVDADK------WEVAWQVL-------VSGNLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI 238 (595)
T ss_dssp EEEEEEEEETTT------TEEEEEEE-------ESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEH
T ss_pred cCceEEEEECCC------CeEEEEEE-------eCCCccceEECCCCC-EEEEEecCcccCcchhhccccccceEEEeec
Confidence 234678888765 23332222 112446678999998 666655442 2333333
Q ss_pred CCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC--CeE-EEee
Q 008939 261 SKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK--EQL-ICGG 337 (548)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~--~~~-~~~~ 337 (548)
... ..+.++|+++.. +.|.|.|.++ ++. +..+
T Consensus 239 ~~~-----------------------------------------~~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~I 273 (595)
T 1fwx_A 239 AEI-----------------------------------------EKAIAAGDYQEL----NGVKVVDGRKEASSLFTRYI 273 (595)
T ss_dssp HHH-----------------------------------------HHHHHHTCSEEE----TTEEEEECSGGGCCSSEEEE
T ss_pred cce-----------------------------------------eEeccCCCeeEE----CcEEEEeCcccCCceeEEEE
Confidence 210 012344544332 4599999998 544 4455
Q ss_pred eecCCceEEEEEccCCCEEEEEe-CCCeEEEEECCCce------------eEEeccCCCCCeEEEEEecCCCCCCCCCCc
Q 008939 338 KSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSMEDRK------------VVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 338 ~~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~~~~~------------~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
..- ....++.++|||+++++++ .+..|.++|+++.+ .+..+. -......++|+| ||
T Consensus 274 pvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-------dG-- 342 (595)
T 1fwx_A 274 PIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-------RG-- 342 (595)
T ss_dssp EEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-------TS--
T ss_pred ecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-------CC--
Confidence 432 3467899999999877765 57899999999653 344443 345678899999 98
Q ss_pred cceeEEEEEEeCCCeEEEEECCC----------CeEEeeeecC
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLEM----------DEIVVPLRRG 437 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~~----------~~~~~~~~~~ 437 (548)
+..++.-.|++|..||+.. .+.+..+..+
T Consensus 343 ----~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~ 381 (595)
T 1fwx_A 343 ----NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH 381 (595)
T ss_dssp ----EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred ----eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc
Confidence 7788888999999999987 5667776654
No 246
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.68 E-value=0.0001 Score=81.02 Aligned_cols=327 Identities=14% Similarity=0.095 Sum_probs=185.4
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEE-------E-----ecCCCCceEEEecCCCCCCceEEEEEcC
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKS-------I-----HFSNSNPVCHAFDQDAKDGHDLLIGLNS 197 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~-------~-----~~~~~~~~~~~~~p~~~~~~~l~~g~~d 197 (548)
...|.++..+.+|.+.+....+.|.++|..+.....+.. . ......+.++..+++ + .|.+|+.+
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~---g-~lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF---N-NIWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSS---C-CEEEEEBS
T ss_pred CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCC---C-CEEEEecC
Confidence 456788888888877665554688899987644222221 0 123456788888775 3 48889988
Q ss_pred CcEEEEEeeecccccccceeeeeee---ccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccc
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHY---NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 274 (548)
+-|..++.... ........ ..........|.++...+++. |..|..++-|..||..+... ..+.
T Consensus 333 ~Gl~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~--~~~~--- 399 (781)
T 3v9f_A 333 GGINFISNAPP------TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVA--IYNK--- 399 (781)
T ss_dssp SCEEEECSSCC------SCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEE--ECC----
T ss_pred CeEEEeCCCCC------cceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeE--EEcc---
Confidence 88999986641 11110000 001122456799999888776 77777777799998764110 0000
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee--ecCCceEEEEEccC
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMD 352 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~spd 352 (548)
.. -......|.++...+++.+.+ |+.++-|..+|..+++...... .....|.++...++
T Consensus 400 ~~------------------~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~ 460 (781)
T 3v9f_A 400 EN------------------RELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKN 460 (781)
T ss_dssp ----------------------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTT
T ss_pred CC------------------CCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCC
Confidence 00 011236789999888876544 6666779999988776543221 12457899988888
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEEeccCC-----CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGH-----NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-----~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+. |..|+. +-|.+||..+++........ ...|.++..++ +| .|..++.++-|..||..+
T Consensus 461 g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-------~g-------~lWigt~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 461 KK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-------EG-------RFWIGTFGGGVGIYTPDM 524 (781)
T ss_dssp SE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-------TC-------CEEEEESSSCEEEECTTC
T ss_pred CC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-------CC-------CEEEEEcCCCEEEEeCCC
Confidence 86 455555 56889998876543322212 46789999887 77 355555544588899877
Q ss_pred CeEEeeeecCCC--CC-CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec----CCCCeeEEEEeCCe-EE
Q 008939 428 DEIVVPLRRGPL--GG-SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV----HTEPLSGLIFTQES-VL 499 (548)
Q Consensus 428 ~~~~~~~~~~~~--~~-~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~----h~~~V~~l~fspd~-l~ 499 (548)
++... +..... .. ...+..+. +..+-+++..+.+..+|....+ ...+.. ....|.++...+++ |.
T Consensus 525 ~~~~~-~~~~~~l~~~~i~~i~~d~-----~g~lWi~T~~Glv~~~d~~~~~-~~~~~~~~gl~~~~i~~i~~d~~g~lW 597 (781)
T 3v9f_A 525 QLVRK-FNQYEGFCSNTINQIYRSS-----KGQMWLATGEGLVCFPSARNFD-YQVFQRKEGLPNTHIRAISEDKNGNIW 597 (781)
T ss_dssp CEEEE-ECTTTTCSCSCEEEEEECT-----TSCEEEEETTEEEEESCTTTCC-CEEECGGGTCSCCCCCEEEECSSSCEE
T ss_pred CeEEE-ccCCCCCCCCeeEEEEECC-----CCCEEEEECCCceEEECCCCCc-EEEccccCCCCCceEEEEEECCCCCEE
Confidence 65433 221110 00 01111111 1222233332211444443332 222211 13457888888765 76
Q ss_pred EEECCCeEEEEeCCCCC
Q 008939 500 TVCREGHIKIWMRPGVA 516 (548)
Q Consensus 500 t~s~Dg~I~iW~~~~~~ 516 (548)
.++..| |..++..+..
T Consensus 598 ~~t~~G-l~~~~~~~~~ 613 (781)
T 3v9f_A 598 ASTNTG-ISCYITSKKC 613 (781)
T ss_dssp EECSSC-EEEEETTTTE
T ss_pred EEcCCc-eEEEECCCCc
Confidence 677666 5556766544
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.63 E-value=3.8e-05 Score=82.71 Aligned_cols=266 Identities=14% Similarity=0.175 Sum_probs=151.8
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccC--CcccCcceEEEEEecCCCcEEEEEeC------CCcEEEEE
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKD--GSVNNSRCTSVTWVPGGDGAFVVGHA------DGNLYVYE 259 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~p~~~~~l~s~~~------dg~v~vwd 259 (548)
+..|++++.++.|+.+|.++ ++.+......... ......++ . -++ .++++.. +|.|+.||
T Consensus 117 ~~~v~v~~~dg~l~alD~~t-----G~~~W~~~~~~~~~~~~~~~~P~----v-~~~--~v~vg~~~~~~~~~g~v~a~D 184 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKT-----GKAIWSQQTTDPAKPYSITGAPR----V-VKG--KVIIGNGGAEYGVRGFVSAYD 184 (668)
T ss_dssp BTEEEEECTTSEEEEEETTT-----CCEEEEEECSCTTSSCBCCSCCE----E-ETT--EEEECCBCTTTCCBCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCC-----CCEeeeeccCCCCCcceecCCCE----E-ECC--EEEEeCCCCCcCCCCEEEEEE
Confidence 45788899999999999876 3444332110000 00111111 1 133 4555543 58999999
Q ss_pred cCCCCCCCCCcccccc-cc-eee-----eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC-----------
Q 008939 260 KSKDGAGDSSFPVIKD-QT-QFS-----VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG----------- 321 (548)
Q Consensus 260 ~~~~~~~~~~~~~~~~-~~-~~~-----~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg----------- 321 (548)
..+ ++....+..... .. .+. ....... ...+.....+......++++|+..+++.+..++
T Consensus 185 ~~t-G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~-g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~ 262 (668)
T 1kv9_A 185 ADT-GKLAWRFYTVPGDPALPYEHPELREAAKTWQ-GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPG 262 (668)
T ss_dssp TTT-CCEEEEEESSCCCTTSCCSSHHHHHHHTTCC-SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTT
T ss_pred CCC-CcEEEEecccCCCCCccccccccccccccCC-ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCC
Confidence 987 444443322110 00 000 0000000 000000001122334578888888888887766
Q ss_pred --------eEEEEeCCCCeEEEeeee--cC-------CceEEEEEccCCC---EEEEEeCCCeEEEEECCCceeEEeccC
Q 008939 322 --------YLRVFDYSKEQLICGGKS--YY-------GALLCCAWSMDGK---YILTGGEDDLVQVWSMEDRKVVAWGEG 381 (548)
Q Consensus 322 --------~v~vwd~~~~~~~~~~~~--~~-------~~v~~l~~spdg~---~l~sgs~dg~I~vwd~~~~~~~~~~~~ 381 (548)
.|..+|.++++.+..++. |. .+.....+..+|+ .++.++.+|.++++|.++++.+.....
T Consensus 263 ~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 342 (668)
T 1kv9_A 263 GGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKF 342 (668)
T ss_dssp CCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred CCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccc
Confidence 399999999999887764 21 2233333444775 688999999999999999988744321
Q ss_pred CC-CCeE-----------------------------------EEEEecCCCCCCCCCCccceeEEEE-------------
Q 008939 382 HN-SWVS-----------------------------------GVAFDSYWSQPNSDGTAETVMYRFG------------- 412 (548)
Q Consensus 382 h~-~~V~-----------------------------------~v~~~p~~~~~~~dg~~~~~~~~l~------------- 412 (548)
.. .+.. .++|+| +.. .+++
T Consensus 343 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-------~~g-----~~yv~~~~~~~~~~~~~ 410 (668)
T 1kv9_A 343 GKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-------GTG-----LVYIPYQEVPGVYRNEG 410 (668)
T ss_dssp SCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-------TTT-----EEEEEEEECCEEECCCG
T ss_pred cccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC-------CCC-----EEEEeccccceEeeeec
Confidence 11 0111 144554 320 1111
Q ss_pred ----------------------EEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCcee
Q 008939 413 ----------------------SVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMR 470 (548)
Q Consensus 413 ----------------------s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~ 470 (548)
....++.|..||+.+++.+.......+.....+. ..+..+..++.++.++.+
T Consensus 411 ~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~------t~gg~vf~g~~dg~l~a~ 484 (668)
T 1kv9_A 411 KDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLS------TAGNLVFQGTAAGQMHAY 484 (668)
T ss_dssp GGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEE------ETTTEEEEECTTSEEEEE
T ss_pred cccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeE------eCCCEEEEECCcccchhh
Confidence 1113488999999999999887764333222222 224566778888999999
Q ss_pred ecCCCCceEEeecCC
Q 008939 471 DVPKLSPLVAHRVHT 485 (548)
Q Consensus 471 d~~~~~~~~~~~~h~ 485 (548)
|..+.+.+..++...
T Consensus 485 d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 485 SADKGEALWQFEAQS 499 (668)
T ss_dssp ETTTCCEEEEEECSS
T ss_pred hhhcChhheEecCCC
Confidence 999999998887653
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.58 E-value=1.7e-05 Score=74.34 Aligned_cols=205 Identities=8% Similarity=-0.048 Sum_probs=133.2
Q ss_pred ceEEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC-CCeEEEEEC
Q 008939 232 RCTSVTWVPGGDGAFVVGHA--DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ-GSINSIAFS 308 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s 308 (548)
....+.|+|++. ++++.+. ++.|+++|+.+.. . +..+.... .....+++.
T Consensus 22 f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~-v-------------------------~~~i~l~~~~fgeGi~~~ 74 (266)
T 2iwa_A 22 FTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGK-V-------------------------ENIHKMDDSYFGEGLTLL 74 (266)
T ss_dssp CEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCC-E-------------------------EEEEECCTTCCEEEEEEE
T ss_pred CcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCC-E-------------------------EEEEecCCCcceEEEEEe
Confidence 357999999864 4444432 5799999998732 1 11111111 122345554
Q ss_pred CCCCEEEEE-ECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC--C--
Q 008939 309 TDGTYLATV-GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH--N-- 383 (548)
Q Consensus 309 p~g~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h--~-- 383 (548)
++.|+.. -.++.+.++|..+.+.+..+..... ....+++||+.|+++..++.|.++|.++.+.+..+.-- .
T Consensus 75 --g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p 150 (266)
T 2iwa_A 75 --NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHR 150 (266)
T ss_dssp --TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred --CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcc
Confidence 4455444 4678999999999999888753211 12446678887777777899999999998877776521 1
Q ss_pred -CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecc
Q 008939 384 -SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 462 (548)
Q Consensus 384 -~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~ 462 (548)
..++.+.|. +| ..++....++.|.+.|..+++.+..+... +.
T Consensus 151 ~~~~nele~~--------dg------~lyvn~~~~~~V~vID~~tg~V~~~I~~~-----------------------g~ 193 (266)
T 2iwa_A 151 VIRLNELEYI--------NG------EVWANIWQTDCIARISAKDGTLLGWILLP-----------------------NL 193 (266)
T ss_dssp CCCEEEEEEE--------TT------EEEEEETTSSEEEEEETTTCCEEEEEECH-----------------------HH
T ss_pred cccceeEEEE--------CC------EEEEecCCCCeEEEEECCCCcEEEEEECC-----------------------Cc
Confidence 246678876 66 56677767899999999999988877541 00
Q ss_pred cCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe---EEEEECCCeEEEEeCCCC
Q 008939 463 LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 463 ~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~---l~t~s~Dg~I~iW~~~~~ 515 (548)
.. + .+..-..-....+.|+|+|+. ++|+.....|..-++...
T Consensus 194 ~~------~-----~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 194 RK------K-----LIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp HH------H-----HHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cc------c-----cccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 00 0 000000012457899999973 778888899999987553
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.56 E-value=1.5e-05 Score=73.73 Aligned_cols=170 Identities=14% Similarity=0.094 Sum_probs=108.7
Q ss_pred eEEEecCCCCCCceEEEEEcCC--cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc
Q 008939 177 VCHAFDQDAKDGHDLLIGLNSG--DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN 254 (548)
Q Consensus 177 ~~~~~~p~~~~~~~l~~g~~dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~ 254 (548)
..+.|+ + +.++.+.+.+| .|+.+|+++ .++...... ..........++++.+.+....++.
T Consensus 46 qGL~~~-~---~~LyestG~~g~S~v~~vD~~T------gkv~~~~~l-------~~~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 46 EGFFYR-N---GYFYESTGLNGRSSIRKVDIES------GKTLQQIEL-------GKRYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEE-T---TEEEEEEEETTEEEEEEECTTT------CCEEEEEEC-------CTTCCEEEEEEETTEEEEEESSSSE
T ss_pred ceEEEE-C---CEEEEECCCCCCceEEEEECCC------CcEEEEEec-------CCccceeEEEEeCCEEEEEEeeCCE
Confidence 667776 4 55566666666 799999886 223332221 2233333233345546666667899
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI 334 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~ 334 (548)
+.+||..+. +.+..+.... ....+++|++.|+....++.|.++|..+.+.+
T Consensus 109 v~v~D~~t~--------------------------~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~ 159 (262)
T 3nol_A 109 GFVWNIRNL--------------------------RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPV 159 (262)
T ss_dssp EEEEETTTC--------------------------CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEE
T ss_pred EEEEECccC--------------------------cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEE
Confidence 999999862 2222332211 22233356777777666788999999998887
Q ss_pred EeeeecC-----CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC------------CCCeEEEEEec
Q 008939 335 CGGKSYY-----GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH------------NSWVSGVAFDS 393 (548)
Q Consensus 335 ~~~~~~~-----~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h------------~~~V~~v~~~p 393 (548)
..+.... ..++.+.|. +|++.+..-.++.|.+.|.++++.+.++... ....+.|+|+|
T Consensus 160 ~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp 234 (262)
T 3nol_A 160 RTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK 234 (262)
T ss_dssp EEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET
T ss_pred EEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC
Confidence 7755321 345667886 7876666657889999999999988776531 23558999999
No 250
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.52 E-value=0.00038 Score=68.44 Aligned_cols=245 Identities=5% Similarity=-0.098 Sum_probs=149.3
Q ss_pred ceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc
Q 008939 133 MTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV 212 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~ 212 (548)
..+.+..+ ..+++++....|+..++... .+..+.-....+..++|++.. +.++++-...+.|+.+++....
T Consensus 36 ~~C~~~~~-~~~ll~~~~~~I~~i~~~g~---~~~~~~~~~~~~~~l~~d~~~--~~ly~~D~~~~~I~r~~~~g~~--- 106 (349)
T 3v64_C 36 RSCKALGP-EPVLLFANRIDIRQVLPHRS---EYTLLLNNLENAIALDFHHRR--ELVFWSDVTLDRILRANLNGSN--- 106 (349)
T ss_dssp SCEEESSS-CCEEEEECBSCEEEECTTSC---CEEEEECSCSCEEEEEEETTT--TEEEEEETTTTEEEEEETTSCS---
T ss_pred Cccccccc-CceeEeecccceEEEeCCCC---eeEEeecCCCceEEEEEeccc--cEEEEEeccCCceEEEecCCCC---
Confidence 34555555 45666666667888888753 333333345578999999862 3344444566789888876521
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCe
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 292 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (548)
.+.+.. . .......+++.+.+.+++++-...+.|.+.+++... ..
T Consensus 107 ~~~~~~------~---~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~~------------------------ 151 (349)
T 3v64_C 107 VEEVVS------T---GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--RK------------------------ 151 (349)
T ss_dssp CEEEEC------S---SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CE------------------------
T ss_pred ceEEEe------C---CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc--eE------------------------
Confidence 011110 0 123457899998766466666667889999876311 00
Q ss_pred eEeeecCCCeEEEEECCCCCEEEEEE-CC-CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEE
Q 008939 293 ARWHICQGSINSIAFSTDGTYLATVG-RD-GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWS 369 (548)
Q Consensus 293 ~~~~~h~~~v~~~~~sp~g~~l~s~~-~d-g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd 369 (548)
..+...-.....++++|.+..|+... .. +.|..+++..................|+++|++..|..+ ...+.|..+|
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~ 231 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence 00111124578899999655555544 34 778888886433222222233457899999876665554 4567899999
Q ss_pred CCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 370 MEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 370 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
++.......+........+|++. ++ .++++-...+.|..+|..+++.+..+.
T Consensus 232 ~dG~~~~~~~~~~~~~P~giav~--------~~------~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 232 LDGSHRKAVISQGLPHPFAITVF--------ED------SLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTSCSCEEEECSSCSSEEEEEEE--------TT------EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCCceEEEEeCCCCCceEEEEE--------CC------EEEEecCCCCeEEEEEccCCCccEEec
Confidence 87543333333334456778774 44 577777778889988876776665554
No 251
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.52 E-value=0.00067 Score=65.69 Aligned_cols=239 Identities=8% Similarity=-0.088 Sum_probs=144.5
Q ss_pred CEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeee
Q 008939 143 TYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHY 222 (548)
Q Consensus 143 ~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~ 222 (548)
.+|+++..+.|+..|+.... ....+ .....+..++|++.. +..+++-...+.|+.+++.... .+.......
T Consensus 2 ~~ll~~~~~~I~~i~~~~~~--~~~~~-~~~~~p~g~~~d~~~--~~ly~~D~~~~~I~~~~~~g~~--~~~~~~~~~-- 72 (316)
T 1ijq_A 2 AYLFFTNRHEVRKMTLDRSE--YTSLI-PNLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAH--GVSSYDTVI-- 72 (316)
T ss_dssp CEEEEECBSSEEEEETTSCC--CEEEE-CSCSSEEEEEEETTT--TEEEEEETTTTEEEEEEC----------CEEEE--
T ss_pred CEEEEECCCeEEEEECCCcc--eEehh-cCCCceEEEEEEeCC--CEEEEEECCCCcEEEEECCCCC--CCcccEEEE--
Confidence 35777777889999998744 33333 245678999999872 3344444556889999876410 000100000
Q ss_pred ccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCe
Q 008939 223 NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI 302 (548)
Q Consensus 223 ~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 302 (548)
.. .......|++.+.+.+++++-...+.|.+++++.. .. ...........
T Consensus 73 -~~---~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~--~~------------------------~~~~~~~~~~P 122 (316)
T 1ijq_A 73 -SR---DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV--KR------------------------KTLFRENGSKP 122 (316)
T ss_dssp -CS---SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS--SE------------------------EEEEECTTCCE
T ss_pred -eC---CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC--ce------------------------EEEEECCCCCc
Confidence 00 12345789998766645566567789999987631 00 00111112467
Q ss_pred EEEEECCCCCEEEEEECC--CeEEEEeCCCCeEEEee-eecCCceEEEEEccCCCEEEEEe-CCCeEEEEECCCceeEEe
Q 008939 303 NSIAFSTDGTYLATVGRD--GYLRVFDYSKEQLICGG-KSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 303 ~~~~~sp~g~~l~s~~~d--g~v~vwd~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~~~~~~~~~ 378 (548)
..++++|.+..|+.+... +.|..+++. +.....+ .........++++|++..|+.+. ..+.|..+|++.......
T Consensus 123 ~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 123 RAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (316)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred ceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence 899999966666655543 688888886 3332222 22345678999999876665554 567999999975322222
Q ss_pred cc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 379 GE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 379 ~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
+. ..-.....|++. ++ +++++-...+.|..+|..+++.+..+.
T Consensus 202 ~~~~~~~~~P~giav~--------~~------~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 202 LEDEKRLAHPFSLAVF--------ED------KVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EECTTTTSSEEEEEEE--------TT------EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred eecCCccCCcEEEEEE--------CC------EEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 22 223445678875 44 577777778899999987777665554
No 252
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.47 E-value=0.00017 Score=69.98 Aligned_cols=209 Identities=13% Similarity=0.103 Sum_probs=123.2
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeecc-------CC------cccCcceEEEEEec
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNK-------DG------SVNNSRCTSVTWVP 240 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~v~~l~~~p 240 (548)
..+.+++|+++ +.+++++..++.|+.||.... .+........ ++ ......+..|++.+
T Consensus 19 ~~p~~i~~d~~---g~~l~v~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~ 89 (322)
T 2fp8_A 19 YAPNSFTFDST---NKGFYTSVQDGRVIKYEGPNS------GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL 89 (322)
T ss_dssp SCCCCEECCTT---CSSEEEECTTSEEEEECCTTT------CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET
T ss_pred CCceEEEEcCC---CCEEEEEcCCCeEEEECCCCC------ceEEEecccccccccccccccchhccccCCCCceEEEcC
Confidence 46788889887 777899999999999987541 1111000000 00 00123578999998
Q ss_pred -CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEE
Q 008939 241 -GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVG 318 (548)
Q Consensus 241 -~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~ 318 (548)
++. |+++...+.|..+|.... .. ..+...... ......+.+++.+ +|++.++-.
T Consensus 90 ~~g~--l~v~d~~~~i~~~d~~~g-~~-~~~~~~~~~--------------------~~~~~p~~i~~d~~~G~l~v~d~ 145 (322)
T 2fp8_A 90 QNNQ--LYIVDCYYHLSVVGSEGG-HA-TQLATSVDG--------------------VPFKWLYAVTVDQRTGIVYFTDV 145 (322)
T ss_dssp TTTE--EEEEETTTEEEEECTTCE-EC-EEEESEETT--------------------EECSCEEEEEECTTTCCEEEEES
T ss_pred CCCc--EEEEECCCCEEEEeCCCC-EE-EEecccCCC--------------------CcccccceEEEecCCCEEEEECC
Confidence 554 566655555888876531 10 000000000 0013467899999 998666543
Q ss_pred C-----------------CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCc-----ee
Q 008939 319 R-----------------DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDR-----KV 375 (548)
Q Consensus 319 ~-----------------dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~-----~~ 375 (548)
. ++.|..||..+++....... ......++|+|++++|+++ ..++.|.+|++... +.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~ 224 (322)
T 2fp8_A 146 STLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV 224 (322)
T ss_dssp CSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE
T ss_pred cccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccce
Confidence 2 36788999887765433222 2345679999999866655 55689999998752 12
Q ss_pred EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC----------CCeEEEEECCCCeEEeee
Q 008939 376 VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ----------DTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 376 ~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~----------Dg~i~lwd~~~~~~~~~~ 434 (548)
+..+ .. ...+++++ +| +++++... .+.|..+|.. ++.+..+
T Consensus 225 ~~~~---~g-P~gi~~d~-------~G------~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~ 275 (322)
T 2fp8_A 225 LVKI---PN-PGNIKRNA-------DG------HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVI 275 (322)
T ss_dssp EEEC---SS-EEEEEECT-------TS------CEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEE
T ss_pred EEeC---CC-CCCeEECC-------CC------CEEEEecCcccccccCCCccEEEEECCC-CCEEEEE
Confidence 2222 23 67889988 88 45555433 4567777753 5544443
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.45 E-value=0.00017 Score=76.07 Aligned_cols=161 Identities=10% Similarity=-0.022 Sum_probs=100.8
Q ss_pred EEEECCCCCEEEEEECC----------------CeEEEEeCCCCeEEEeeeecC----------CceEEEEEccCCC---
Q 008939 304 SIAFSTDGTYLATVGRD----------------GYLRVFDYSKEQLICGGKSYY----------GALLCCAWSMDGK--- 354 (548)
Q Consensus 304 ~~~~sp~g~~l~s~~~d----------------g~v~vwd~~~~~~~~~~~~~~----------~~v~~l~~spdg~--- 354 (548)
.+++.++...++.+..+ +.|..+|.++++.+..++... .++. +....+|+
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence 35566665566665532 369999999999987765321 1221 23335774
Q ss_pred EEEEEeCCCeEEEEECCCceeEEeccCCC--C-----------Ce--------------------------EEEEEecCC
Q 008939 355 YILTGGEDDLVQVWSMEDRKVVAWGEGHN--S-----------WV--------------------------SGVAFDSYW 395 (548)
Q Consensus 355 ~l~sgs~dg~I~vwd~~~~~~~~~~~~h~--~-----------~V--------------------------~~v~~~p~~ 395 (548)
.++.++.+|.+.++|.++++.+..+.... . ++ ..++|+|
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-- 395 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-- 395 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET--
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC--
Confidence 57788899999999999998876553211 1 11 1234555
Q ss_pred CCCCCCCCccceeEEEEEEe-------------------------------------CCCeEEEEECCCCeEEeeeecCC
Q 008939 396 SQPNSDGTAETVMYRFGSVG-------------------------------------QDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 396 ~~~~~dg~~~~~~~~l~s~~-------------------------------------~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
+. .+|.... .++.|..||+.+++.+..+....
T Consensus 396 -----~~------g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~ 464 (571)
T 2ad6_A 396 -----ES------RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF 464 (571)
T ss_dssp -----TT------TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS
T ss_pred -----CC------CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC
Confidence 33 1222221 35789999999999888876543
Q ss_pred CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecC
Q 008939 439 LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH 484 (548)
Q Consensus 439 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h 484 (548)
......+ ...+..+.++..+..+..+|..+++.+..+...
T Consensus 465 ~~~~~~~------~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 465 AAWGGTL------YTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CCCSBCE------EETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CccceeE------EECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 2222111 112345666777888888888888888777644
No 254
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.45 E-value=0.00038 Score=69.54 Aligned_cols=244 Identities=5% Similarity=-0.099 Sum_probs=148.3
Q ss_pred eEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccc
Q 008939 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK 214 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~ 214 (548)
+.+..+ ..+++++....|+..++.... +..+.-....+..++|++.. +.++++-...+.|+.+++...
T Consensus 81 C~~~~~-~~~l~~~~~~~I~~i~~~~~~---~~~~~~~~~~~~gl~~d~~~--~~ly~~D~~~~~I~r~~~~g~------ 148 (386)
T 3v65_B 81 CKALGP-EPVLLFANRIDIRQVLPHRSE---YTLLLNNLENAIALDFHHRR--ELVFWSDVTLDRILRANLNGS------ 148 (386)
T ss_dssp EEECSS-CCEEEEECBSCEEEECTTSCC---CEEEECSCSCEEEEEEETTT--TEEEEEETTTTEEEEEETTSC------
T ss_pred ECCccc-cceeEeecCccceeeccCCCc---EEEEecCCCccEEEEEecCC--CeEEEEeCCCCcEEEEecCCC------
Confidence 344444 456666666788888987633 33333345678999999862 344445456678988887651
Q ss_pred ceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeE
Q 008939 215 KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIAR 294 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (548)
....... . .......|++.+.+.+++++-...+.|.+.+++. ... ...
T Consensus 149 ~~~~~~~---~---~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg--~~~------------------------~~l 196 (386)
T 3v65_B 149 NVEEVVS---T---GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHR------------------------KVL 196 (386)
T ss_dssp CEEEEEC---S---SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS--CSC------------------------EEE
T ss_pred CcEEEEe---C---CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC--Cce------------------------EEe
Confidence 1111000 0 1234567888887664556656667787777653 110 011
Q ss_pred eeecCCCeEEEEECCCCCEEEEEEC-C-CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECC
Q 008939 295 WHICQGSINSIAFSTDGTYLATVGR-D-GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSME 371 (548)
Q Consensus 295 ~~~h~~~v~~~~~sp~g~~l~s~~~-d-g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~ 371 (548)
+...-.....++++|.+..|+.... . +.|..+++..................|+|+|++..|+.+ ...+.|..+|++
T Consensus 197 ~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 197 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 1111245788999996666665543 3 678888886433322222334457899999876655554 456789999987
Q ss_pred CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 372 DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 372 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.......+........+|++. ++ .++++-...+.|..+|..+++.+..+..
T Consensus 277 G~~~~~~~~~~~~~P~giav~--------~~------~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 277 GSHRKAVISQGLPHPFAITVF--------ED------SLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SCSCEEEECSSCSSEEEEEEE--------TT------EEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCeeEEEEECCCCCceEEEEE--------CC------EEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 543333333334456778874 44 5777777788999999777776666553
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.42 E-value=5.8e-05 Score=69.86 Aligned_cols=158 Identities=9% Similarity=0.057 Sum_probs=107.8
Q ss_pred cceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeE--EEE
Q 008939 231 SRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSIN--SIA 306 (548)
Q Consensus 231 ~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~ 306 (548)
.....|.|+ ++. ++.+.+.+| .|+++|+.+.. . +..+... .... .++
T Consensus 43 ~ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgk-v-------------------------~~~~~l~-~~~FgeGit 93 (262)
T 3nol_A 43 AFTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGK-T-------------------------LQQIELG-KRYFGEGIS 93 (262)
T ss_dssp CEEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCC-E-------------------------EEEEECC-TTCCEEEEE
T ss_pred cccceEEEE-CCE-EEEECCCCCCceEEEEECCCCc-E-------------------------EEEEecC-CccceeEEE
Confidence 344788898 554 677776666 89999998732 1 1111111 2222 344
Q ss_pred ECCCCCEEEEEE-CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC--C
Q 008939 307 FSTDGTYLATVG-RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH--N 383 (548)
Q Consensus 307 ~sp~g~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h--~ 383 (548)
+ ++..|.... .++.+.+||..+.+.+.++.... ....+++|++.|+....++.|.++|.++.+.+..+.-. .
T Consensus 94 ~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g 168 (262)
T 3nol_A 94 D--WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG 168 (262)
T ss_dssp E--ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT
T ss_pred E--eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC
Confidence 4 344554444 58899999999999998877432 22334467887777766889999999998887776531 2
Q ss_pred ---CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 384 ---SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 384 ---~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
..++.+.|. +| ++++..-.+..|.+.|.++++.+..+..
T Consensus 169 ~~~~~lNELe~~--------~G------~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 169 EELPELNELEWV--------DG------EIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp EECCCEEEEEEE--------TT------EEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred ccccccceeEEE--------CC------EEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 345567775 77 6667666789999999999999888765
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.41 E-value=0.0008 Score=70.97 Aligned_cols=162 Identities=15% Similarity=0.023 Sum_probs=101.6
Q ss_pred EEEECCCCCEEEEEEC--------------------C----CeEEEEeCCCCeEEEeeee--cC--------CceEEEEE
Q 008939 304 SIAFSTDGTYLATVGR--------------------D----GYLRVFDYSKEQLICGGKS--YY--------GALLCCAW 349 (548)
Q Consensus 304 ~~~~sp~g~~l~s~~~--------------------d----g~v~vwd~~~~~~~~~~~~--~~--------~~v~~l~~ 349 (548)
.++++|+..+++.+.. | +.|..+|.++++.+..++. |. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4667777777776663 2 5899999999999887653 21 1221 122
Q ss_pred c-cCCC---EEEEEeCCCeEEEEECCCceeEEeccCCC--CCeEE-----------------------------------
Q 008939 350 S-MDGK---YILTGGEDDLVQVWSMEDRKVVAWGEGHN--SWVSG----------------------------------- 388 (548)
Q Consensus 350 s-pdg~---~l~sgs~dg~I~vwd~~~~~~~~~~~~h~--~~V~~----------------------------------- 388 (548)
. .+|+ .++.++.+|.++++|.++++.+..+.... .+...
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 2 4674 78889999999999999998876554321 11222
Q ss_pred --------EEEecCCCCCCCCCCccceeEEEEEEe---------------------------------CCCeEEEEECCC
Q 008939 389 --------VAFDSYWSQPNSDGTAETVMYRFGSVG---------------------------------QDTRLLLWDLEM 427 (548)
Q Consensus 389 --------v~~~p~~~~~~~dg~~~~~~~~l~s~~---------------------------------~Dg~i~lwd~~~ 427 (548)
++|+| +. .++.... .++.|..||+.+
T Consensus 409 ~Gg~~w~~~a~dp-------~~------g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~t 475 (582)
T 1flg_A 409 LGGKNWNPMAYSQ-------DT------GLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVS 475 (582)
T ss_dssp TCSSCSSCCEECT-------TT------CCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTT
T ss_pred ccccCCCCceECC-------CC------CEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCC
Confidence 22222 11 1121111 368899999999
Q ss_pred CeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCC
Q 008939 428 DEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHT 485 (548)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~ 485 (548)
++.+.......+... +.....+..+..++.+..++.+|..+++.+..++...
T Consensus 476 G~~~W~~~~~~~~~~------g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 476 GKVVWEHKEHLPLWA------GVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp CCEEEEEEESSCCCS------CCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCEEEEecCCCCCcc------cceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence 998877765332211 1111224556667778888888888888887776543
No 257
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.39 E-value=0.00039 Score=67.39 Aligned_cols=240 Identities=6% Similarity=-0.036 Sum_probs=145.5
Q ss_pred CEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeee
Q 008939 143 TYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHY 222 (548)
Q Consensus 143 ~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~ 222 (548)
.+|+++....|+..+++.........+. ....+..++|++.. +.++++-...+.|+.+++.... ....+.. .
T Consensus 5 p~ll~~~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~--~~lyw~D~~~~~I~r~~~~g~~--~~~~~~~-~-- 76 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSH--GLIYWSDVSEEAIKRTEFNKTE--SVQNVVV-S-- 76 (318)
T ss_dssp CEEEEECEEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGG--TEEEEEETTTTEEEEEETTSSS--CCCEEEE-E--
T ss_pred cEEEEEccCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCC--CEEEEEECCCCcEEEEEccCCC--ceEEEEc-C--
Confidence 3566766679999999875312222222 22367788999862 3444555566788888876520 0011111 0
Q ss_pred ccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCe
Q 008939 223 NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI 302 (548)
Q Consensus 223 ~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 302 (548)
.......+++.+.+.+++++-...+.|.+++++.. .... .........
T Consensus 77 ------~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~--~~~~------------------------l~~~~~~~P 124 (318)
T 3sov_A 77 ------GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS--LRKV------------------------LFWQELDQP 124 (318)
T ss_dssp ------CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEE------------------------EECSSCSSE
T ss_pred ------CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC--cEEE------------------------EEeCCCCCc
Confidence 12356789998866646666666788999987631 1000 011112457
Q ss_pred EEEEECCCCCEEEEEEC--CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCceeEEec
Q 008939 303 NSIAFSTDGTYLATVGR--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 303 ~~~~~sp~g~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~~~~~~~ 379 (548)
..++++|.+..|+.... .+.|..+++................+.|+++|++..|+.+ ...+.|..+|++.......+
T Consensus 125 ~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~ 204 (318)
T 3sov_A 125 RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV 204 (318)
T ss_dssp EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe
Confidence 88999986666666552 5788888886332222222233456899999976665554 45789999999754332233
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 380 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 380 ~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.+......++++.. + .++.+-...+.|..+|..+++.+..+..
T Consensus 205 ~~~~~~P~glav~~-------~-------~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 205 KGSLPHPFALTLFE-------D-------ILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp CSCCSCEEEEEEET-------T-------EEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred cCCCCCceEEEEeC-------C-------EEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 33345567787754 3 4677777788999999988876655543
No 258
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.38 E-value=5.7e-05 Score=81.33 Aligned_cols=255 Identities=14% Similarity=0.158 Sum_probs=142.4
Q ss_pred CCEEEEecCC-eEEEEEccCCCCCCeEEEecCCC-CceEEEecCCCCCCceEEEEEc------CCcEEEEEeeecccccc
Q 008939 142 GTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNS-NPVCHAFDQDAKDGHDLLIGLN------SGDVYSVSLRQQLQDVG 213 (548)
Q Consensus 142 g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~-~~~~~~~~p~~~~~~~l~~g~~------dg~I~iwdl~~~~~~~~ 213 (548)
+..++++..+ .|+.+|.++++ .+-....... ....+...|.-. +..++++.. +|.|+.+|.++ +
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~t-----G 188 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGK--AIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADT-----G 188 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCC--EEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTT-----C
T ss_pred CCEEEEEcCCCEEEEEECCCCC--EeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCC-----C
Confidence 3455555544 88888988865 5555443211 001111111100 335666654 58899999876 3
Q ss_pred cceeeeeee--ccCCc----------------------ccCcceEEEEEecCCCcEEEEEeCCCc---------------
Q 008939 214 KKLVGAHHY--NKDGS----------------------VNNSRCTSVTWVPGGDGAFVVGHADGN--------------- 254 (548)
Q Consensus 214 ~~~~~~~~~--~~~~~----------------------~~~~~v~~l~~~p~~~~~l~s~~~dg~--------------- 254 (548)
+.+...... .+... ........+++.|+.. +++.+..++.
T Consensus 189 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l 267 (668)
T 1kv9_A 189 KLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNL 267 (668)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCT
T ss_pred cEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCce
Confidence 333222110 00000 0111223578888877 7888877663
Q ss_pred ----EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCC---EEEEEECCCeEEEE
Q 008939 255 ----LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGT---YLATVGRDGYLRVF 326 (548)
Q Consensus 255 ----v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~---~l~s~~~dg~v~vw 326 (548)
|+.+|.++ ++....++..... .|.. ...++....+..+|+ .|+.++.+|.+.++
T Consensus 268 ~~~~v~AlD~~t-G~~~W~~~~~~~~-----------------~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~l 329 (668)
T 1kv9_A 268 YLSSILAIRPDT-GKLAWHYQVTPGD-----------------SWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVL 329 (668)
T ss_dssp TTTEEEEECTTT-CCEEEEEESSTTC-----------------CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred eeeeEEEEcCCC-CceeeEeecCCCc-----------------cccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEE
Confidence 77888776 3333332211000 0000 002222223333564 68889999999999
Q ss_pred eCCCCeEEEeeeecC------------Cc------------------------eEEEEEccCCCEEEEEe----------
Q 008939 327 DYSKEQLICGGKSYY------------GA------------------------LLCCAWSMDGKYILTGG---------- 360 (548)
Q Consensus 327 d~~~~~~~~~~~~~~------------~~------------------------v~~l~~spdg~~l~sgs---------- 360 (548)
|.++++++...+... .+ -..++++|+..++++..
T Consensus 330 D~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~ 409 (668)
T 1kv9_A 330 DRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNE 409 (668)
T ss_dssp ETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCC
T ss_pred ECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeee
Confidence 999999874432111 00 01257788776655421
Q ss_pred --------------------------CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE
Q 008939 361 --------------------------EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414 (548)
Q Consensus 361 --------------------------~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~ 414 (548)
.++.|..||+.+++.+-....+. .+....+.. .+ .+++.+
T Consensus 410 ~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-------~g------g~vf~g 475 (668)
T 1kv9_A 410 GKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLST-------AG------NLVFQG 475 (668)
T ss_dssp GGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEE-------TT------TEEEEE
T ss_pred ccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEe-------CC------CEEEEE
Confidence 23789999999998876655332 222222222 33 277788
Q ss_pred eCCCeEEEEECCCCeEEeeeecC
Q 008939 415 GQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 415 ~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
+.|+.|+.||.++++.+..++..
T Consensus 476 ~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 476 TAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp CTTSEEEEEETTTCCEEEEEECS
T ss_pred CCcccchhhhhhcChhheEecCC
Confidence 99999999999999999888764
No 259
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.36 E-value=0.00024 Score=74.93 Aligned_cols=168 Identities=12% Similarity=0.019 Sum_probs=103.0
Q ss_pred EEEECCCCCEEEEEECC----------------CeEEEEeCCCCeEEEeeeecCC----------ceEEEEEc-cCC---
Q 008939 304 SIAFSTDGTYLATVGRD----------------GYLRVFDYSKEQLICGGKSYYG----------ALLCCAWS-MDG--- 353 (548)
Q Consensus 304 ~~~~sp~g~~l~s~~~d----------------g~v~vwd~~~~~~~~~~~~~~~----------~v~~l~~s-pdg--- 353 (548)
.+++.++..+++.+..+ +.|..+|.++++.+..++.... ++. +... .+|
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 35566766677777654 3899999999999877664321 121 2222 567
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEeccCCC-------------CCe--------------------------EEEEEecC
Q 008939 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHN-------------SWV--------------------------SGVAFDSY 394 (548)
Q Consensus 354 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~-------------~~V--------------------------~~v~~~p~ 394 (548)
+.++.++.+|.+.++|.++++.+....... .++ ..++|+|
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp- 402 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP- 402 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-
T ss_pred EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC-
Confidence 567788999999999999998775543110 111 1233444
Q ss_pred CCCCCCCCCc----------------------cc---eeEEEEE--Ee------CCCeEEEEECCCCeEEeeeecCCCCC
Q 008939 395 WSQPNSDGTA----------------------ET---VMYRFGS--VG------QDTRLLLWDLEMDEIVVPLRRGPLGG 441 (548)
Q Consensus 395 ~~~~~~dg~~----------------------~~---~~~~l~s--~~------~Dg~i~lwd~~~~~~~~~~~~~~~~~ 441 (548)
+..- .. ....+.. .+ .++.|..||+.+++.+...+...+..
T Consensus 403 ------~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~ 476 (599)
T 1w6s_A 403 ------KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVW 476 (599)
T ss_dssp ------TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCC
T ss_pred ------CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCcc
Confidence 2200 00 0000111 01 45889999999999988876532211
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHT 485 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~ 485 (548)
. +........+..++.+..++.+|..+++.+..++...
T Consensus 477 ~------g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 477 G------GTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp S------BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred C------cceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence 1 1112234566678888899999999999988886543
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.35 E-value=7.2e-05 Score=69.25 Aligned_cols=169 Identities=12% Similarity=0.055 Sum_probs=109.0
Q ss_pred eEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEE
Q 008939 177 VCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLY 256 (548)
Q Consensus 177 ~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~ 256 (548)
..+.|+. +.++.+.+.+|.|+.+|+++ ++.+ ... .. .........++++.+.+....++.+.
T Consensus 58 qGL~~~~----~~Ly~stG~~g~v~~iD~~T-----gkv~-~~~-l~-------~~~FgeGit~~g~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 58 QGLVFHQ----GHFFESTGHQGTLRQLSLES-----AQPV-WME-RL-------GNIFAEGLASDGERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEET----TEEEEEETTTTEEEECCSSC-----SSCS-EEE-EC-------TTCCEEEEEECSSCEEEEESSSCEEE
T ss_pred ceEEEEC----CEEEEEcCCCCEEEEEECCC-----CcEE-eEE-CC-------CCcceeEEEEeCCEEEEEEccCCEEE
Confidence 5666652 45666777778999999987 2222 211 11 12222222334444667677889999
Q ss_pred EEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe
Q 008939 257 VYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG 336 (548)
Q Consensus 257 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~ 336 (548)
+||..+. +.+..+... ..-..++ +|++.|+....++.|.++|.++.+.+..
T Consensus 120 V~D~~Tl--------------------------~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~ 170 (268)
T 3nok_A 120 TWSGMPP--------------------------QRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGA 170 (268)
T ss_dssp EEETTTT--------------------------EEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEE
T ss_pred EEECCcC--------------------------cEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEE
Confidence 9998862 122222211 1112333 5677887777789999999999988776
Q ss_pred eeecC-----CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC-------------CCCeEEEEEec
Q 008939 337 GKSYY-----GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH-------------NSWVSGVAFDS 393 (548)
Q Consensus 337 ~~~~~-----~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-------------~~~V~~v~~~p 393 (548)
+.-.. ..++.+.|. +|++.+....++.|.+.|.++++.+.++... .+-.+.|+|+|
T Consensus 171 I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp 244 (268)
T 3nok_A 171 VQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP 244 (268)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT
T ss_pred EEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC
Confidence 65322 245677887 7876655657889999999999988776421 23568999998
No 261
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.34 E-value=0.0015 Score=65.45 Aligned_cols=241 Identities=7% Similarity=-0.084 Sum_probs=146.9
Q ss_pred CCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc-ccceeeee
Q 008939 142 GTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV-GKKLVGAH 220 (548)
Q Consensus 142 g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~-~~~~~~~~ 220 (548)
..+++++....|+..++.... .. .+.-....+..++|++.. +.++++-...+.|+.+++....... ...+..
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~--~~-~~~~~~~~~~~l~~d~~~--~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-- 155 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSE--YT-SLIPNLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-- 155 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCS--CE-EEECSCSCEEEEEEETTT--TEEEEEETTTTEEEEEEC------CCCEEEEC--
T ss_pred cceeEEeccceeEEEccCCcc--ee-EeccccCcceEEeeeecc--CceEEEecCCCeEEEEEcccCCCCCcceEEEe--
Confidence 356777777899999998643 32 333345688999999872 3344444556788888876411000 011110
Q ss_pred eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 221 HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 221 ~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
........|++.+.+.+++++-...+.|.+.+++.. . ....+...-.
T Consensus 156 -------~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~--~------------------------~~~l~~~~~~ 202 (400)
T 3p5b_L 156 -------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV--K------------------------RKTLFRENGS 202 (400)
T ss_dssp -------SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC--S------------------------EEEEEECSSC
T ss_pred -------CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC--c------------------------eEEEEeCCCC
Confidence 023457789998866646666666788888887631 1 0111111224
Q ss_pred CeEEEEECCCCCEEEEEEC--CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCceeEE
Q 008939 301 SINSIAFSTDGTYLATVGR--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~~~~~ 377 (548)
....++++|.+.+|+.... .+.|...++..................|++++++..|+.+ ...+.|..+|++......
T Consensus 203 ~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~ 282 (400)
T 3p5b_L 203 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT 282 (400)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEE
T ss_pred CcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEE
Confidence 5789999996666666542 3678888886433332233333567899999887766665 456789999987543322
Q ss_pred ecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 378 WGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 378 ~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.+. ..-....+|++. .+ .++.+-...+.|..+|..+++.+..+..
T Consensus 283 ~~~~~~~l~~P~gl~v~--------~~------~lywtd~~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 283 ILEDEKRLAHPFSLAVF--------ED------KVFWTDIINEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp EEECSSTTSSEEEEEEE--------TT------EEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred EEeCCCCCCCCEEEEEe--------CC------EEEEecCCCCeEEEEEcCCCCceEEEec
Confidence 222 223445577774 33 5777777788999999878776666543
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.32 E-value=0.00026 Score=74.55 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=79.9
Q ss_pred CCCC---EEEEEECCCeEEEEeCCCCeEEEeeeecC-------------Cce--------------------------EE
Q 008939 309 TDGT---YLATVGRDGYLRVFDYSKEQLICGGKSYY-------------GAL--------------------------LC 346 (548)
Q Consensus 309 p~g~---~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-------------~~v--------------------------~~ 346 (548)
.+|+ .++.++.+|.+.++|.++++++...+... .++ ..
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 390 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV 390 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence 4674 57778889999999999999887654221 111 23
Q ss_pred EEEccCCCEEEEEe-------------------------------------CCCeEEEEECCCceeEEeccCCCCCeEEE
Q 008939 347 CAWSMDGKYILTGG-------------------------------------EDDLVQVWSMEDRKVVAWGEGHNSWVSGV 389 (548)
Q Consensus 347 l~~spdg~~l~sgs-------------------------------------~dg~I~vwd~~~~~~~~~~~~h~~~V~~v 389 (548)
++++|+..+|++.. .++.|..||+.+++.+-++.. ...+...
T Consensus 391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~-~~~~~~~ 469 (571)
T 2ad6_A 391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE-KFAAWGG 469 (571)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE-SSCCCSB
T ss_pred ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC-CCCccce
Confidence 57888877776653 347899999999987766542 2222222
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 390 AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 390 ~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
.+.. .++ ++..++.|+.|+.||.++++++..++...
T Consensus 470 ~~~t------~gg-------~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 470 TLYT------KGG-------LVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp CEEE------TTT-------EEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eEEE------CCC-------EEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 1221 044 56668899999999999999999888643
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.31 E-value=0.00014 Score=67.36 Aligned_cols=158 Identities=10% Similarity=0.053 Sum_probs=109.6
Q ss_pred cceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCe--EEEEEC
Q 008939 231 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI--NSIAFS 308 (548)
Q Consensus 231 ~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~s 308 (548)
.....|.|+. +. ++++.+.+|.|+++|+.+.. ..... .. ... ..+++.
T Consensus 55 ~ftqGL~~~~-~~-Ly~stG~~g~v~~iD~~Tgk-v~~~~--------------------------l~-~~~FgeGit~~ 104 (268)
T 3nok_A 55 AFTQGLVFHQ-GH-FFESTGHQGTLRQLSLESAQ-PVWME--------------------------RL-GNIFAEGLASD 104 (268)
T ss_dssp CCEEEEEEET-TE-EEEEETTTTEEEECCSSCSS-CSEEE--------------------------EC-TTCCEEEEEEC
T ss_pred cccceEEEEC-CE-EEEEcCCCCEEEEEECCCCc-EEeEE--------------------------CC-CCcceeEEEEe
Confidence 3446788873 33 77788888999999998732 21111 11 122 235554
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC--CC---
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG--HN--- 383 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~--h~--- 383 (548)
.+ ++....-.++.+.+||.++.+.+.++... ..-.. +++|++.|+....++.|.++|.++.+.+..+.- +.
T Consensus 105 g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwG--Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v 180 (268)
T 3nok_A 105 GE-RLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWG--LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV 180 (268)
T ss_dssp SS-CEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCC--EEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred CC-EEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeE--EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc
Confidence 33 34444446889999999999999888743 22223 346788888877799999999999988877653 22
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 384 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
..++.+.|. +| ++++..-.+..|.+.|.++++.+..+..
T Consensus 181 ~~lNeLe~~--------dG------~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 181 ELINELECA--------NG------VIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp CCEEEEEEE--------TT------EEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred ccccccEEe--------CC------EEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 245677876 67 5666666788999999999999887765
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.30 E-value=0.00013 Score=79.79 Aligned_cols=134 Identities=14% Similarity=0.048 Sum_probs=83.3
Q ss_pred ceEEEEEe-cCCCcEEEEEeCCC----cEEEEEcCCC-CCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 232 RCTSVTWV-PGGDGAFVVGHADG----NLYVYEKSKD-GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 232 ~v~~l~~~-p~~~~~l~s~~~dg----~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
.+...+|+ |||+.++++...+| .|+++|+..+ ...... + . .....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~----------------------~---~---~~~~~~ 226 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK----------------------V---S---GTNGEI 226 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC----------------------E---E---EECSCC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc----------------------c---c---CceeeE
Confidence 57789999 99994333444444 4999999863 211000 0 0 113468
Q ss_pred EECCCCCEEEEEECC-----CeEEEEeCCCCeE--EEeee-ecCCceEEEEEccCCCEEEEEeC---CCeEEEEECCCc-
Q 008939 306 AFSTDGTYLATVGRD-----GYLRVFDYSKEQL--ICGGK-SYYGALLCCAWSMDGKYILTGGE---DDLVQVWSMEDR- 373 (548)
Q Consensus 306 ~~sp~g~~l~s~~~d-----g~v~vwd~~~~~~--~~~~~-~~~~~v~~l~~spdg~~l~sgs~---dg~I~vwd~~~~- 373 (548)
+|+||++.|+....| ..|.++++.+++. +..+. ........+.|+|||++|+.... ...|.++|+.++
T Consensus 227 ~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~ 306 (751)
T 2xe4_A 227 VWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN 306 (751)
T ss_dssp EECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT
T ss_pred EEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC
Confidence 899999888877765 3588888876531 22222 22344668899999998876553 346888999875
Q ss_pred -ee--EEeccCCCCCeEEEEEec
Q 008939 374 -KV--VAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 374 -~~--~~~~~~h~~~V~~v~~~p 393 (548)
+. .............+.|+.
T Consensus 307 ~~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 307 AHNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp TCCCEEESSCCCTTCCEEEEEET
T ss_pred CCceeEEeecCCCCceEEEeeee
Confidence 23 223333455666666653
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.30 E-value=0.00023 Score=65.25 Aligned_cols=181 Identities=18% Similarity=0.177 Sum_probs=110.9
Q ss_pred eEEEecCC-CCceEEEecCCCCCCceEEEEEcCC--cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCC
Q 008939 166 IKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLNSG--DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG 242 (548)
Q Consensus 166 i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~ 242 (548)
+....+.+ .....+.|+. +.++.+.+..| .|+.+|+.+ .++...... ..........+.+
T Consensus 12 ~~~~phd~~~ftqGL~~~~----~~LyestG~~g~S~v~~vD~~t------gkv~~~~~l-------~~~~fgeGi~~~~ 74 (243)
T 3mbr_X 12 VKRYPHDTTAFTEGLFYLR----GHLYESTGETGRSSVRKVDLET------GRILQRAEV-------PPPYFGAGIVAWR 74 (243)
T ss_dssp EEEEECCTTCCEEEEEEET----TEEEEEECCTTSCEEEEEETTT------CCEEEEEEC-------CTTCCEEEEEEET
T ss_pred EEEcCCCCccccccEEEEC----CEEEEECCCCCCceEEEEECCC------CCEEEEEeC-------CCCcceeEEEEeC
Confidence 44444322 2345777875 33444444443 799999986 233332221 1222222233334
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCe
Q 008939 243 DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGY 322 (548)
Q Consensus 243 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~ 322 (548)
+.+++..-.++.+.+||..+. +.+..+..... =..++ ++++.|+....++.
T Consensus 75 ~~ly~ltw~~~~v~v~D~~tl--------------------------~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~ 125 (243)
T 3mbr_X 75 DRLIQLTWRNHEGFVYDLATL--------------------------TPRARFRYPGE-GWALT--SDDSHLYMSDGTAV 125 (243)
T ss_dssp TEEEEEESSSSEEEEEETTTT--------------------------EEEEEEECSSC-CCEEE--ECSSCEEEECSSSE
T ss_pred CEEEEEEeeCCEEEEEECCcC--------------------------cEEEEEeCCCC-ceEEe--eCCCEEEEECCCCe
Confidence 546666678899999998762 22222222111 12343 56677777677889
Q ss_pred EEEEeCCCCeEEEeeeecC-----CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC-------------CCC
Q 008939 323 LRVFDYSKEQLICGGKSYY-----GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG-------------HNS 384 (548)
Q Consensus 323 v~vwd~~~~~~~~~~~~~~-----~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~-------------h~~ 384 (548)
|.++|.++.+.+..+.-.. ..++.+.|. +|+..+..-.+..|.+.|.++++.+..+.. -..
T Consensus 126 l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~ 204 (243)
T 3mbr_X 126 IRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTND 204 (243)
T ss_dssp EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSS
T ss_pred EEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCC
Confidence 9999999998877765422 345677776 777666665788999999999998877641 123
Q ss_pred CeEEEEEec
Q 008939 385 WVSGVAFDS 393 (548)
Q Consensus 385 ~V~~v~~~p 393 (548)
-.+.|+|+|
T Consensus 205 vlNGIA~d~ 213 (243)
T 3mbr_X 205 VLNGIAFDA 213 (243)
T ss_dssp CEEEEEEET
T ss_pred ceEEEEEcC
Confidence 568999999
No 266
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.26 E-value=0.00095 Score=64.19 Aligned_cols=222 Identities=14% Similarity=0.082 Sum_probs=123.7
Q ss_pred CCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC--cEEEEEeee
Q 008939 131 TSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG--DVYSVSLRQ 207 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg--~I~iwdl~~ 207 (548)
..+..++++++|.++++...+ .|+.||.+.. ....+. .+..+..++++++ ++++++..... .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~-~~~~p~gia~~~d---G~l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHAT-VEGKVSGLAFTSN---GDLVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEE-CSSEEEEEEECTT---SCEEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEEe-CCCCceeEEEcCC---CcEEEEeccCCcceEEEEcCCC
Confidence 345678999999977776554 8999987642 333333 3457899999998 66444433322 366666443
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCC-CCCCCcccccccceeeeecCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG-AGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
+ ++...... . .......++..+++. .+++-..++.|+++|..... ..........
T Consensus 105 -----g-~~~~~~~~-~----~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~------------ 160 (306)
T 2p4o_A 105 -----G-TVETLLTL-P----DAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLA------------ 160 (306)
T ss_dssp -----S-CEEEEEEC-T----TCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGS------------
T ss_pred -----C-eEEEEEeC-C----CccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEECCccc------------
Confidence 1 11111111 1 112234455445443 44444468889888875310 0000000000
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCC-CeE--EEeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSK-EQL--ICGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~-~~~--~~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
...+. ..-...+.+ +++++.|+.+. ..+.|.+|++.. ++. ...+.. ......+++.++|+++++....
T Consensus 161 -~~~~~----~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~ 232 (306)
T 2p4o_A 161 -RSNSE----SVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIY 232 (306)
T ss_dssp -CSSTT----CCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTT
T ss_pred -ccccc----CCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCC
Confidence 00000 000234455 77887666554 567899999874 322 111111 1345678999999887777778
Q ss_pred CeEEEEECCCcee--EEeccCCCCCeEEEEEe
Q 008939 363 DLVQVWSMEDRKV--VAWGEGHNSWVSGVAFD 392 (548)
Q Consensus 363 g~I~vwd~~~~~~--~~~~~~h~~~V~~v~~~ 392 (548)
+.|.++|.. ++. +..+.......++++|.
T Consensus 233 ~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 233 NSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp CCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred CeEEEECCC-CCEEEEeecccccCCceEEEEe
Confidence 899999976 554 33344334678999997
No 267
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.25 E-value=7.7e-05 Score=80.30 Aligned_cols=247 Identities=14% Similarity=0.063 Sum_probs=136.3
Q ss_pred eEEeCC-CCCEEEEecCC------------eEEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEEEEEc-CCc
Q 008939 135 NTNFDG-KGTYIIFNVGD------------AIFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLN-SGD 199 (548)
Q Consensus 135 ~~~~~~-~g~~l~~~~~d------------~v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~-dg~ 199 (548)
.+++.+ +|+++++++.+ .+.+||..+.....+..+.... ....++++.++ +.++++|+. +..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~---g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN---GQIVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT---SCEEEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC---CCEEEeCCCCCCc
Confidence 566666 88888886421 5889999987766766654322 23334677776 778888874 457
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe-CC-----CcEEEEEcCCCCCCCCCcccc
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-AD-----GNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-~d-----g~v~vwd~~~~~~~~~~~~~~ 273 (548)
+.+||..+..+.....+ . ....-.++...+++. +++.|+ .+ ..+.+||..++. - ..++..
T Consensus 267 v~~yd~~t~~W~~~~~~------~-----~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~-W-~~~~~~ 332 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDM------Q-----VARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKT-W-TSLPNA 332 (656)
T ss_dssp EEEEEGGGTEEEECCCC------S-----SCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTE-E-EEETTS
T ss_pred eEEecCcCCceeECCCC------C-----ccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCc-c-eeCCCc
Confidence 99999876433222111 0 111123455667888 888887 34 568999987521 0 000000
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC---------CCeEEEEeCCCCeEEEeeeecC---
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR---------DGYLRVFDYSKEQLICGGKSYY--- 341 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~---------dg~v~vwd~~~~~~~~~~~~~~--- 341 (548)
.. .++..-. + ...+..+++.++.++. ...+..||..+.........+.
T Consensus 333 ~~--------------~p~~~~~-~-----~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~ 392 (656)
T 1k3i_A 333 KV--------------NPMLTAD-K-----QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR 392 (656)
T ss_dssp CS--------------GGGCCCC-T-----TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETT
T ss_pred cc--------------ccccccc-c-----cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccc
Confidence 00 0000000 0 0111223333333333 3467889988765433222111
Q ss_pred ------CceEEEEEc-cCCCEEEEEeCCC-----------eEEEEECCCceeEEec--cCCCCCe-EEEEEecCCCCCCC
Q 008939 342 ------GALLCCAWS-MDGKYILTGGEDD-----------LVQVWSMEDRKVVAWG--EGHNSWV-SGVAFDSYWSQPNS 400 (548)
Q Consensus 342 ------~~v~~l~~s-pdg~~l~sgs~dg-----------~I~vwd~~~~~~~~~~--~~h~~~V-~~v~~~p~~~~~~~ 400 (548)
..-.++.|. .++++++.|+.++ .|.+||..+.+..... ..+.... .+++..|
T Consensus 393 ~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~------- 465 (656)
T 1k3i_A 393 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP------- 465 (656)
T ss_dssp EECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-------
T ss_pred ccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC-------
Confidence 122344444 3778888887542 6888888876544332 2222222 3445566
Q ss_pred CCCccceeEEEEEEeCC-----------CeEEEEECCCCeEE
Q 008939 401 DGTAETVMYRFGSVGQD-----------TRLLLWDLEMDEIV 431 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~D-----------g~i~lwd~~~~~~~ 431 (548)
+| ++++.++.+ ..+.+||..+.+..
T Consensus 466 ~g------~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~ 501 (656)
T 1k3i_A 466 DG------STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY 501 (656)
T ss_dssp TS------CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred CC------CEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence 77 688888865 46899999887654
No 268
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.24 E-value=0.00098 Score=67.56 Aligned_cols=236 Identities=12% Similarity=0.120 Sum_probs=136.4
Q ss_pred CCceeEEeCCC---CCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC-----cEEE
Q 008939 131 TSMTNTNFDGK---GTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG-----DVYS 202 (548)
Q Consensus 131 ~~v~~~~~~~~---g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg-----~I~i 202 (548)
..+..++++++ |.+.++.....|+.+|+.++ .+..+......+..++|+++ +. |+++...+ .+..
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---~v~~~~~~~~~P~giavd~d---G~-lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---YVDIKTTNIGQCADVNFTLN---GD-MVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---EEEEECCCCSCEEEEEECTT---CC-EEEEECCSCTTSEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCC---EEEEeecCCCCccEEEECCC---CC-EEEEcCCCCcccceEEE
Confidence 35668999985 55554444368999998753 44454445567999999998 66 66555432 1333
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEec-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
++..... ....... .......+++.| ++. ++++-..++.|+.+|.... .....+
T Consensus 212 ~~~~~~~--~~~~~~~----------~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g-~~~~~~----------- 266 (433)
T 4hw6_A 212 FTRASGF--TERLSLC----------NARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATG-TLTEEE----------- 266 (433)
T ss_dssp ECGGGTT--CCEEEEE----------ECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTC-CEEEEE-----------
T ss_pred EECCCCe--ecccccc----------ccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCC-eEEEEE-----------
Confidence 3222100 0000100 133457788999 555 5555556778888887631 110000
Q ss_pred ecCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCC--CCeE--EEeeeec---------------
Q 008939 282 AHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLATVG-RDGYLRVFDYS--KEQL--ICGGKSY--------------- 340 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~--~~~~--~~~~~~~--------------- 340 (548)
+.. ....-..++|+|++++|+.+. ..+.|+.+++. ++.. ...+.+.
T Consensus 267 -------------~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~ 333 (433)
T 4hw6_A 267 -------------VMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGAR 333 (433)
T ss_dssp -------------EECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSB
T ss_pred -------------eccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceE
Confidence 000 012234699999998665554 56789998875 3321 1111111
Q ss_pred CCceEEEEE---------ccCCCEEEEEeCCCeEEEEECCCceeEEeccCC------------------CCCeEEEEEe-
Q 008939 341 YGALLCCAW---------SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH------------------NSWVSGVAFD- 392 (548)
Q Consensus 341 ~~~v~~l~~---------spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h------------------~~~V~~v~~~- 392 (548)
......+++ .++|.++++-...+.|+.++. ++...... +. -..-..|+++
T Consensus 334 ~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 411 (433)
T 4hw6_A 334 LWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDM 411 (433)
T ss_dssp CSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred EcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence 123567888 777877777777889999985 45433222 11 1235678888
Q ss_pred cCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 393 SYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 393 p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+ +| .++++-...+.|+.++++
T Consensus 412 ~-------~g------~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 412 K-------RK------CFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp T-------TT------EEEEEEGGGTEEEEEEEC
T ss_pred C-------CC------EEEEEeCCCCEEEEEecC
Confidence 4 66 566666667778777654
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.24 E-value=0.0044 Score=60.80 Aligned_cols=160 Identities=10% Similarity=-0.046 Sum_probs=100.3
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+..++|.+....++++-...+.|+.++++.... .............+++.+
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~--------------------------~~~~~~~~~~p~glavd~ 125 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV--------------------------EEVVSTGLESPGGLAVDW 125 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------------EEEECSSCSCCCEEEEET
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc--------------------------eEEEeCCCCCccEEEEec
Confidence 345789999987774555555678888888764210 000111113456889987
Q ss_pred CCCEE-EEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE-EeCC-CeEEEEECCCceeEEeccCCCCCe
Q 008939 310 DGTYL-ATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT-GGED-DLVQVWSMEDRKVVAWGEGHNSWV 386 (548)
Q Consensus 310 ~g~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s-gs~d-g~I~vwd~~~~~~~~~~~~h~~~V 386 (548)
.+..| ++-...+.|.+.++........+.........+++.|.+..|+. -..+ +.|..++++.......+...-...
T Consensus 126 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~P 205 (349)
T 3v64_C 126 VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWP 205 (349)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCE
T ss_pred CCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCc
Confidence 54444 45455688999998754333223333456789999996655544 4444 789999887543332223234567
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
..|+++| ++. +++++-...+.|..+|+..
T Consensus 206 nGla~d~-------~~~-----~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 206 NGLTIDY-------AGR-----RMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEEEET-------TTT-----EEEEEETTTTEEEEEETTS
T ss_pred ceEEEeC-------CCC-----EEEEEECCCCEEEEEeCCC
Confidence 8999997 542 5666666678899998764
No 270
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.23 E-value=0.00041 Score=63.57 Aligned_cols=160 Identities=9% Similarity=0.011 Sum_probs=107.1
Q ss_pred CcceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCe--EEE
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI--NSI 305 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~ 305 (548)
......+.|++ +. ++.+.+.+| .|+.+|+.++. . +...... ... ..+
T Consensus 20 ~~ftqGL~~~~-~~-LyestG~~g~S~v~~vD~~tgk-v-------------------------~~~~~l~-~~~fgeGi 70 (243)
T 3mbr_X 20 TAFTEGLFYLR-GH-LYESTGETGRSSVRKVDLETGR-I-------------------------LQRAEVP-PPYFGAGI 70 (243)
T ss_dssp TCCEEEEEEET-TE-EEEEECCTTSCEEEEEETTTCC-E-------------------------EEEEECC-TTCCEEEE
T ss_pred ccccccEEEEC-CE-EEEECCCCCCceEEEEECCCCC-E-------------------------EEEEeCC-CCcceeEE
Confidence 34556889986 33 566666544 89999998732 1 1111111 122 234
Q ss_pred EECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC--CC
Q 008939 306 AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG--HN 383 (548)
Q Consensus 306 ~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~--h~ 383 (548)
++.. +++....-.++.+.+||.++.+.+.++..... -..+ .+|++.|+....++.|.++|.++.+.+.++.- +.
T Consensus 71 ~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g 146 (243)
T 3mbr_X 71 VAWR-DRLIQLTWRNHEGFVYDLATLTPRARFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG 146 (243)
T ss_dssp EEET-TEEEEEESSSSEEEEEETTTTEEEEEEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred EEeC-CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC
Confidence 4432 33344445688999999999999988874322 2333 46777777777789999999999888777653 21
Q ss_pred ---CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 384 ---SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 384 ---~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
..++.+.|. +| +.++..-.+..|.+.|.++++.+..+..
T Consensus 147 ~~~~~lNeLe~~--------~G------~lyanvw~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 147 RPLDNLNELEWV--------NG------ELLANVWLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp EECCCEEEEEEE--------TT------EEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred cccccceeeEEe--------CC------EEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 345677775 66 5666666788999999999999888765
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.19 E-value=0.0038 Score=62.17 Aligned_cols=183 Identities=11% Similarity=-0.037 Sum_probs=110.5
Q ss_pred EEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 194 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 194 g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
-+....|+.+++... ....... ....+..++|.+.+..++++-...+.|+.++++....
T Consensus 92 ~~~~~~I~~i~~~~~------~~~~~~~-------~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-------- 150 (386)
T 3v65_B 92 FANRIDIRQVLPHRS------EYTLLLN-------NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-------- 150 (386)
T ss_dssp EECBSCEEEECTTSC------CCEEEEC-------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE--------
T ss_pred eecCccceeeccCCC------cEEEEec-------CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc--------
Confidence 344567888877541 1111111 2345789999987774555655678888888764210
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEE-EEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYL-ATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd 352 (548)
...+.........+++++.+..| ++-...+.|.+.++........+.........+++.|.
T Consensus 151 ------------------~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~ 212 (386)
T 3v65_B 151 ------------------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPM 212 (386)
T ss_dssp ------------------EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETT
T ss_pred ------------------EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcC
Confidence 00001111345678888754444 44455678999988744333333333456789999987
Q ss_pred CCEEEEEe-CC-CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 353 GKYILTGG-ED-DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 353 g~~l~sgs-~d-g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+..|+... .+ +.|..++++...........-.....|+|+| ++. +++++-...+.|..+|+..
T Consensus 213 ~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~-------~~~-----~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 213 EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDY-------AGR-----RMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEG-------GGT-----EEEEEETTTTEEEEECTTS
T ss_pred CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeC-------CCC-----EEEEEECCCCEEEEEeCCC
Confidence 66555544 34 7898898875433333333345678999997 441 5666666678888888764
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.15 E-value=0.0034 Score=58.25 Aligned_cols=212 Identities=12% Similarity=0.131 Sum_probs=123.0
Q ss_pred CCceeEEeCCCCCEEEE-ecCC-eEEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 131 TSMTNTNFDGKGTYIIF-NVGD-AIFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~-~~~d-~v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
..+..++|+|++..|.+ ...+ .|...|+. + +.++.+.+.. ...-.+++.++ +.++++.-.++.++++++..
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g--~v~~~i~l~g~~D~EGIa~~~~---g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G--DLIRTIPLDFVKDLETIEYIGD---NQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-C--CEEEEEECSSCSSEEEEEECST---TEEEEEETTTTEEEEEEECT
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C--CEEEEEecCCCCChHHeEEeCC---CEEEEEECCCCcEEEEEcCC
Confidence 45778999998776665 3334 78888876 3 3677776532 46777888776 55555555667899998865
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
... ........+.......+.....|+|.|.++ .|+++.......+|.++. -.....+....+.. + ..
T Consensus 101 ~~~---i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va~E~~p~~i~~~~g-~~~~~~l~i~~~~~-~--~~---- 168 (255)
T 3qqz_A 101 NSE---VKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFFKEKNPIEVYKVNG-LLSSNELHISKDKA-L--QR---- 168 (255)
T ss_dssp TCC---EEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEEEESSSEEEEEEES-TTCSSCCEEEECHH-H--HH----
T ss_pred CCe---eeeeeeeccccccccccCCcceEEEeCCCC-EEEEEECcCCceEEEEcc-cccCCceeeecchh-h--cc----
Confidence 211 011111211110112355689999999998 555555555555665541 00000111110000 0 00
Q ss_pred CCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeec---------CCceEEEEEccCCCEEE
Q 008939 288 KSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSY---------YGALLCCAWSMDGKYIL 357 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~---------~~~v~~l~~spdg~~l~ 357 (548)
..+...+.+++++|. +++++.......|.++|.. ++.+..+.-. ......|+|.++|++.+
T Consensus 169 --------~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI 239 (255)
T 3qqz_A 169 --------QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI 239 (255)
T ss_dssp --------TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE
T ss_pred --------ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE
Confidence 001135789999994 5566666677889999976 5554443322 12568899999998554
Q ss_pred EEeCCCeEEEEEC
Q 008939 358 TGGEDDLVQVWSM 370 (548)
Q Consensus 358 sgs~dg~I~vwd~ 370 (548)
+ ++-+.++++.-
T Consensus 240 v-sE~n~~y~f~~ 251 (255)
T 3qqz_A 240 V-SEPNRFYRFTP 251 (255)
T ss_dssp E-ETTTEEEEEEC
T ss_pred E-cCCceEEEEEe
Confidence 4 67777776653
No 273
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.13 E-value=0.0034 Score=59.53 Aligned_cols=241 Identities=10% Similarity=0.110 Sum_probs=153.3
Q ss_pred EEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccc
Q 008939 136 TNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 215 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~ 215 (548)
+-.+|..+.|+.-.++.++|+|+++ +..+....+. ..+..-.|-.+ ..|+. -.+..|+-|+++.. . .
T Consensus 72 AIMnP~~~ViALrag~~LQiFnlet--K~klks~~~~-e~VvfWkWis~----~~L~l-VT~taVyHWs~~~~--s--~- 138 (365)
T 2xzh_A 72 AIMNPASKVIALKAGKTLQIFNIEM--KSKMKAHTMT-DDVTFWKWISL----NTVAL-VTDNAVYHWSMEGE--S--Q- 138 (365)
T ss_dssp EEECSSSSEEEEEETTEEEEEETTT--TEEEEEEECS-SCEEEEEECSS----SEEEE-EESSEEEEEESSTT--C--C-
T ss_pred eeeCCCccEEEEecCCeEEEechHH--hhhhcceecC-CccEEEEecCC----CeEEE-EcCCcEEEEcccCC--C--C-
Confidence 4557888999998888999999998 5588888864 57777777654 12333 33458999998751 1 1
Q ss_pred eeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe------CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 216 LVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH------ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
....|.+........|.....+++.++++++|- -.|.+.+|..+.
T Consensus 139 --P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er--------------------------- 189 (365)
T 2xzh_A 139 --PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--------------------------- 189 (365)
T ss_dssp --CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT---------------------------
T ss_pred --CceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc---------------------------
Confidence 112244444445678888888999986666654 247788998875
Q ss_pred CCeeEeeecCCCeEEEEECCC---CCEEEEEECC---CeEEEEeCCCC---eE------EEeeee---cCCceEEEEEcc
Q 008939 290 NPIARWHICQGSINSIAFSTD---GTYLATVGRD---GYLRVFDYSKE---QL------ICGGKS---YYGALLCCAWSM 351 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~---g~~l~s~~~d---g~v~vwd~~~~---~~------~~~~~~---~~~~v~~l~~sp 351 (548)
+..+.+++|.+....+.+.-+ .++++.+... +.|+|.++... .. +..+-. -.+--.++..++
T Consensus 190 ~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~ 269 (365)
T 2xzh_A 190 KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE 269 (365)
T ss_dssp TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET
T ss_pred cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc
Confidence 234445555444433333211 1244444332 58999988432 11 111111 123345677787
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEE
Q 008939 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 352 dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~ 431 (548)
.-..+..-+.-|.|++||++++.++..-+--.+.|..-+.+. +. .=++.....|.|.--.++....+
T Consensus 270 kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~-------~~------~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 270 KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-------AT------AGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEG-------GG------TEEEEEETTCEEEEEEECTTTHH
T ss_pred cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccC-------CC------CcEEEEcCCCEEEEEEECcccEe
Confidence 777888888999999999999999887776667776555543 21 12556667788777777665544
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=0.0016 Score=65.95 Aligned_cols=237 Identities=14% Similarity=0.203 Sum_probs=133.7
Q ss_pred CCceeEEeCC-CCCEEEEecC-CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC-C----cEEEE
Q 008939 131 TSMTNTNFDG-KGTYIIFNVG-DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS-G----DVYSV 203 (548)
Q Consensus 131 ~~v~~~~~~~-~g~~l~~~~~-d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d-g----~I~iw 203 (548)
..+..++++| ++..|.+... ..|+.+|++.. .+..+.-....+..++|+++ ++.|+++... + .+..+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~---~v~~~~~~~~~P~~ia~d~~---G~~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE---YVSTVYSGLSKVRTICWTHE---ADSMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTT---EEEEEECCCSCEEEEEECTT---SSEEEEEECCSCTTSEEEEEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCC---EEEEEecCCCCcceEEEeCC---CCEEEEEeCCCCcccceEEEE
Confidence 3567899998 3444444433 68888998753 34444435567999999998 7766666652 2 23333
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEec-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
+..... ..... .. .......++++| ++. ++++-..++.|+.|+...... .
T Consensus 211 ~~~g~~----~~~~~-l~-------~~~~p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~-~--------------- 261 (430)
T 3tc9_A 211 TRESGF----KVITE-LT-------KGQNCNGAETHPINGE-LYFNSWNAGQVFRYDFTTQET-T--------------- 261 (430)
T ss_dssp EGGGTS----CSEEE-EE-------ECSSCCCEEECTTTCC-EEEEETTTTEEEEEETTTTEE-E---------------
T ss_pred eCCCce----eeeee-ec-------cCCCceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcE-E---------------
Confidence 322211 10000 00 123457888999 555 666666778899999864110 0
Q ss_pred cCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCC--CeE--EEeeeec---------------C
Q 008939 283 HPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSK--EQL--ICGGKSY---------------Y 341 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~--~~~--~~~~~~~---------------~ 341 (548)
..... .......++|+|++++|+.+. ..+.|.+++... ++. +..+.+. .
T Consensus 262 ----------~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~ 331 (430)
T 3tc9_A 262 ----------PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARM 331 (430)
T ss_dssp ----------EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBB
T ss_pred ----------EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEe
Confidence 00000 013467899999999655554 567899987753 322 1112111 0
Q ss_pred CceE-EEEEc--------cCCCEEEEEeCCCeEEEEECCCceeEEecc-------C--C--------CCCeEEEEEecCC
Q 008939 342 GALL-CCAWS--------MDGKYILTGGEDDLVQVWSMEDRKVVAWGE-------G--H--------NSWVSGVAFDSYW 395 (548)
Q Consensus 342 ~~v~-~l~~s--------pdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-------~--h--------~~~V~~v~~~p~~ 395 (548)
.... .++.. ++|.++++-...+.|+.++. +++.....- + . -..-..|+++|
T Consensus 332 ~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~-- 408 (430)
T 3tc9_A 332 HAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE-- 408 (430)
T ss_dssp SSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET--
T ss_pred CCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC--
Confidence 1122 44443 34666666666788888883 454332221 1 0 12467788876
Q ss_pred CCCCCC-CCccceeEEEEEEeCCCeEEEEECC
Q 008939 396 SQPNSD-GTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 396 ~~~~~d-g~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+ | .++++-.....|+.++++
T Consensus 409 -----~~g------~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 409 -----ERE------CFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -----TTT------EEEEEEGGGTEEEEEEEC
T ss_pred -----CCC------EEEEEECCCCeEEEEccC
Confidence 4 4 566666666777777653
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.12 E-value=0.00086 Score=73.21 Aligned_cols=114 Identities=9% Similarity=0.104 Sum_probs=68.9
Q ss_pred CceeEEeC-CCCCEEEEecC----C--eEEEEEccCC-CCCCe-EEEecCCCCceEEEecCCCCCCceEEEEEcC-----
Q 008939 132 SMTNTNFD-GKGTYIIFNVG----D--AIFISDLNSQ-DKDPI-KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS----- 197 (548)
Q Consensus 132 ~v~~~~~~-~~g~~l~~~~~----d--~v~vwd~~~~-~~~~i-~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d----- 197 (548)
.+...+|+ |||++|++... + .|+++|+.++ . .+ ..+.. ....++|+|+ +..|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~--~l~~~~~~---~~~~~~WspD---g~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ--TIADKVSG---TNGEIVWGPD---HTSLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC--CCCCCEEE---ECSCCEECSS---TTEEEEEEECTTCCE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE--eCCccccC---ceeeEEEecC---CCEEEEEEECCCCCC
Confidence 56678999 99999997542 2 5999999986 4 11 11111 1346789998 6667766664
Q ss_pred CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC--CCcEEEEEcCC
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA--DGNLYVYEKSK 262 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~--dg~v~vwd~~~ 262 (548)
.+|+++++.+.. ....++ +... .......+.|+|+++.++++... ...|+++|+..
T Consensus 247 ~~v~~~~lgt~~--~~~~lv----~~~~---~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 247 NKVWRHVMGKLQ--SEDVCL----YEEH---NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp EEEEEEETTSCG--GGCEEE----EECC---CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred CEEEEEECCCCc--hhcEEE----EecC---CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 258888876521 111111 1100 12345688999999944444432 34677788765
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.09 E-value=0.00015 Score=77.95 Aligned_cols=206 Identities=15% Similarity=0.090 Sum_probs=109.8
Q ss_pred CceEEEecC-CCCCCceEEEEEcCC-----------cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCC
Q 008939 175 NPVCHAFDQ-DAKDGHDLLIGLNSG-----------DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG 242 (548)
Q Consensus 175 ~~~~~~~~p-~~~~~~~l~~g~~dg-----------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~ 242 (548)
.....++.+ + +..++.|+.+. .+.+||+.+..+...... . . .+...+.++++.+++
T Consensus 187 ~~~~~av~~~~---g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~----~--~---~~~~~~~~~~~~~~g 254 (656)
T 1k3i_A 187 VPAAAAIEPTS---GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT----V--T---KHDMFCPGISMDGNG 254 (656)
T ss_dssp CCSEEEEETTT---TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE----E--C---SCCCSSCEEEECTTS
T ss_pred CceeEEEEecC---CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc----C--C---CCCCccccccCCCCC
Confidence 344566666 4 67788877543 578888876332221110 0 0 023344567888888
Q ss_pred CcEEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CC
Q 008939 243 DGAFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RD 320 (548)
Q Consensus 243 ~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~d 320 (548)
. +++.|+ .+..+++||..++. - ...... +. ...-.++++.+++++++.|+ .+
T Consensus 255 ~-lyv~GG~~~~~v~~yd~~t~~-W-~~~~~~-----------------~~------~R~~~s~~~~~dg~iyv~GG~~~ 308 (656)
T 1k3i_A 255 Q-IVVTGGNDAKKTSLYDSSSDS-W-IPGPDM-----------------QV------ARGYQSSATMSDGRVFTIGGSWS 308 (656)
T ss_dssp C-EEEECSSSTTCEEEEEGGGTE-E-EECCCC-----------------SS------CCSSCEEEECTTSCEEEECCCCC
T ss_pred C-EEEeCCCCCCceEEecCcCCc-e-eECCCC-----------------Cc------cccccceEEecCCeEEEEeCccc
Confidence 8 888877 45689999987521 0 000000 00 01123456667899999888 34
Q ss_pred -----CeEEEEeCCCCeEEEee----eecCCceEEEEEccCCCEEEEEeCC---------CeEEEEECCCceeEEeccCC
Q 008939 321 -----GYLRVFDYSKEQLICGG----KSYYGALLCCAWSMDGKYILTGGED---------DLVQVWSMEDRKVVAWGEGH 382 (548)
Q Consensus 321 -----g~v~vwd~~~~~~~~~~----~~~~~~v~~l~~spdg~~l~sgs~d---------g~I~vwd~~~~~~~~~~~~h 382 (548)
..+.+||..+.+-...- ......-....+..+++.++.|+.+ ..+..||..+.........+
T Consensus 309 ~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~ 388 (656)
T 1k3i_A 309 GGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR 388 (656)
T ss_dssp SSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEEC
T ss_pred CCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcc
Confidence 56999999887643320 0000000001223455555555544 35678888776533322211
Q ss_pred C---------CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC-----------eEEEEECCCCeE
Q 008939 383 N---------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT-----------RLLLWDLEMDEI 430 (548)
Q Consensus 383 ~---------~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg-----------~i~lwd~~~~~~ 430 (548)
. ..-.++.|... ++ ++++.|+.+. .|.+||..+.+.
T Consensus 389 ~~~~~~~~~~~~~~av~~~~~------~~------~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 444 (656)
T 1k3i_A 389 QSNRGVAPDAMCGNAVMYDAV------KG------KILTFGGSPDYQDSDATTNAHIITLGEPGTSPN 444 (656)
T ss_dssp EETTEECCCCBTCEEEEEETT------TT------EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE
T ss_pred ccccccCCCCCCCceEeccCC------CC------eEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe
Confidence 1 12345555431 55 6777777543 566677666543
No 277
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.08 E-value=0.0012 Score=69.53 Aligned_cols=113 Identities=13% Similarity=0.068 Sum_probs=75.4
Q ss_pred CCC---CEEEEEECCCeEEEEeCCCCeEEEeeeecC-------------Cce--------------------------EE
Q 008939 309 TDG---TYLATVGRDGYLRVFDYSKEQLICGGKSYY-------------GAL--------------------------LC 346 (548)
Q Consensus 309 p~g---~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-------------~~v--------------------------~~ 346 (548)
.+| +.++.++.+|.+.++|.++++++....... .++ ..
T Consensus 318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 397 (599)
T 1w6s_A 318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGH 397 (599)
T ss_dssp TTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCC
Confidence 466 567778899999999999999886654211 011 23
Q ss_pred EEEccCCCEEEEEe---------------------------------------CCCeEEEEECCCceeEEeccCCCCCeE
Q 008939 347 CAWSMDGKYILTGG---------------------------------------EDDLVQVWSMEDRKVVAWGEGHNSWVS 387 (548)
Q Consensus 347 l~~spdg~~l~sgs---------------------------------------~dg~I~vwd~~~~~~~~~~~~h~~~V~ 387 (548)
++++|+..++++.. .++.|.-||+.+++.+-... +..++.
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~-~~~~~~ 476 (599)
T 1w6s_A 398 DSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVW 476 (599)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCC
T ss_pred ccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEec-CCCCcc
Confidence 56777766655432 34678888888887765543 111111
Q ss_pred -E-EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 388 -G-VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 388 -~-v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
. +.- . ++ +++.++.|+.|+.||.++++++..++..
T Consensus 477 ~g~~~t-a-------gg-------~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 477 GGTMAT-A-------GD-------LVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp SBCEEE-T-------TT-------EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CcceEe-c-------CC-------EEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 1 221 1 34 6667899999999999999999988764
No 278
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.08 E-value=0.006 Score=66.41 Aligned_cols=239 Identities=7% Similarity=-0.072 Sum_probs=145.3
Q ss_pred CEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc-cccceeeeee
Q 008939 143 TYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD-VGKKLVGAHH 221 (548)
Q Consensus 143 ~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~-~~~~~~~~~~ 221 (548)
.+|+++....|+..++.... ...+......+..++|++.. +.++++-...+.|+.+++...... ....++.
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~---~~~l~~~~~~~~gl~~d~~~--~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--- 467 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSE---YTSLIPNLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--- 467 (791)
T ss_dssp CEEEEECBSSEEEECTTSCC---CEEEECSCSSEEEEEEETTT--TEEEEEETTTTEEEEEEC--------CEEEEC---
T ss_pred cccccccccceeEeeccCCc---ceeeecCCCceEEEeecccC--CeeEEeeccceeEEEEeccCCCCCcceeEEEe---
Confidence 35666666688888887533 33333355678899999862 344445555677888887642100 0011110
Q ss_pred eccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCC
Q 008939 222 YNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS 301 (548)
Q Consensus 222 ~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 301 (548)
........|++.+.+.+++++-...+.|.+.+++.. .. ...+...-..
T Consensus 468 ------~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~--~~------------------------~~l~~~~l~~ 515 (791)
T 3m0c_C 468 ------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV--KR------------------------KTLFRENGSK 515 (791)
T ss_dssp ------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS--SE------------------------EEEEECTTCC
T ss_pred ------cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC--eE------------------------EEEEeCCCCC
Confidence 023456789999888756666667788999988631 10 0111112245
Q ss_pred eEEEEECCCCCEEEEEEC--CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCceeEEe
Q 008939 302 INSIAFSTDGTYLATVGR--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 302 v~~~~~sp~g~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~~~~~~ 378 (548)
...|+++|...+|+.... .+.|.+.++........+.........|++.+.+..|+.+ ...+.|...+++.......
T Consensus 516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence 789999997666666553 2679999987444333333334578899999877666655 4567899999875443333
Q ss_pred ccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 379 GEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 379 ~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
+.. .-....+|++. .+ +++++-...+.|...|..+++.+..+.
T Consensus 596 ~~~~~~l~~P~glav~--------~~------~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 596 LEDEKRLAHPFSLAVF--------ED------KVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EECTTTTSSEEEEEEE--------TT------EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred ecCCCccCCCCEEEEe--------CC------EEEEEECCCCEEEEEeCCCCcceEEee
Confidence 332 22344566664 33 567777778889989987776665554
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.05 E-value=0.013 Score=58.56 Aligned_cols=191 Identities=7% Similarity=-0.055 Sum_probs=115.5
Q ss_pred EEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 008939 191 LLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSF 270 (548)
Q Consensus 191 l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 270 (548)
++.-.....|+..++... ....... ....+..|+|.+.+..++++-...+.|+.++++......
T Consensus 85 ~ll~~~~~~I~~i~l~~~------~~~~~~~-------~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~--- 148 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRS------EYTSLIP-------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--- 148 (400)
T ss_dssp EEEEEETTEEEEECTTSC------SCEEEEC-------SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C---
T ss_pred eeEEeccceeEEEccCCc------ceeEecc-------ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC---
Confidence 333445578888887652 1111111 345678999999777455555567888888876411000
Q ss_pred ccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEE
Q 008939 271 PVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAW 349 (548)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~ 349 (548)
.....+.........+++.+. ++++++-...+.|.+.++........+.........|++
T Consensus 149 -------------------~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iav 209 (400)
T 3p5b_L 149 -------------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV 209 (400)
T ss_dssp -------------------CCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEE
T ss_pred -------------------cceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEE
Confidence 001111111246778999884 444455556788999999755444334434456789999
Q ss_pred ccCCCEEEEEe-C-CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 350 SMDGKYILTGG-E-DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 350 spdg~~l~sgs-~-dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
.|.+.+|+... . .+.|...+++.......+...-.....|+++| ++. +++++-.....|..+|+..
T Consensus 210 dp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~-------~~~-----~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 210 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-------LSG-----RLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp ETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEET-------TTT-----EEEEEETTTTEEEEEETTS
T ss_pred ecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEe-------CCC-----EEEEEECCCCEEEEEeCCC
Confidence 99766665544 2 47899999875443333333346778999997 541 4556656678899999865
Q ss_pred C
Q 008939 428 D 428 (548)
Q Consensus 428 ~ 428 (548)
.
T Consensus 278 ~ 278 (400)
T 3p5b_L 278 G 278 (400)
T ss_dssp C
T ss_pred C
Confidence 3
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.04 E-value=0.011 Score=57.09 Aligned_cols=186 Identities=7% Similarity=-0.059 Sum_probs=110.6
Q ss_pred EcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccc
Q 008939 195 LNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 195 ~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 274 (548)
+....|+..|+... ....... ....+..++|.+.+..++++-..++.|+.++++......
T Consensus 7 ~~~~~I~~i~~~~~------~~~~~~~-------~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~------- 66 (316)
T 1ijq_A 7 TNRHEVRKMTLDRS------EYTSLIP-------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS------- 66 (316)
T ss_dssp ECBSSEEEEETTSC------CCEEEEC-------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------
T ss_pred ECCCeEEEEECCCc------ceEehhc-------CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc-------
Confidence 33457888888752 1111111 234578999999776466666667899999886411000
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEE-EEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYL-ATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG 353 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg 353 (548)
.....+...-.....+++++.+..| ++-...+.|.++++........+.........+++.|.+
T Consensus 67 ---------------~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~ 131 (316)
T 1ijq_A 67 ---------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH 131 (316)
T ss_dssp ----------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT
T ss_pred ---------------ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCC
Confidence 0000011111346789998754444 444567899999987543333333334567899999966
Q ss_pred CEEEEEeC-C-CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 354 KYILTGGE-D-DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 354 ~~l~sgs~-d-g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
..|+.... . +.|...+++...........-.....|+++| ++. +++++-...+.|..+|+..
T Consensus 132 g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~-------~~~-----~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 132 GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-------LSG-----RLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEET-------TTT-----EEEEEETTTTEEEEEETTS
T ss_pred CEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEec-------cCC-----EEEEEECCCCeEEEEecCC
Confidence 65555443 3 6888888864332222222345678999998 542 4566666778999999874
No 281
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.02 E-value=0.0027 Score=66.97 Aligned_cols=114 Identities=18% Similarity=0.074 Sum_probs=77.1
Q ss_pred CCCC---EEEEEECCCeEEEEeCCCCeEEEeeeecC-------------Cc-----------------------------
Q 008939 309 TDGT---YLATVGRDGYLRVFDYSKEQLICGGKSYY-------------GA----------------------------- 343 (548)
Q Consensus 309 p~g~---~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-------------~~----------------------------- 343 (548)
.+|+ .++.++.+|.+.++|.++++++....... .+
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 4664 78888999999999999999886654321 00
Q ss_pred ---eEEEEEccCCCEEEEEe---------------------------------CCCeEEEEECCCceeEEeccCCCCCeE
Q 008939 344 ---LLCCAWSMDGKYILTGG---------------------------------EDDLVQVWSMEDRKVVAWGEGHNSWVS 387 (548)
Q Consensus 344 ---v~~l~~spdg~~l~sgs---------------------------------~dg~I~vwd~~~~~~~~~~~~h~~~V~ 387 (548)
-..++++|+..++++.. .++.|.-||+.+++.+-+...+. .+.
T Consensus 411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~ 489 (582)
T 1flg_A 411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLW 489 (582)
T ss_dssp SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCC
T ss_pred ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCc
Confidence 01345666655555432 25789999999998775554221 111
Q ss_pred --EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 388 --GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 388 --~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
.+.. . +| +++.++.|+.|+.||.++++.+..++...
T Consensus 490 ~g~~~t-a-------gg-------lvf~g~~dg~l~A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 490 AGVLAT-A-------GN-------LVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp SCCEEE-T-------TT-------EEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccceEe-C-------CC-------EEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence 1121 2 44 67778999999999999999999888743
No 282
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.01 E-value=0.011 Score=57.29 Aligned_cols=216 Identities=11% Similarity=0.112 Sum_probs=111.3
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCC-CCCeEE-EecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQD-KDPIKS-IHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~-~~~i~~-~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
..+..+.|.+++..++++....| ++..+.+. .+.+.. .......+..+.|++. .+++++..|.|+. ..
T Consensus 36 ~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~-----~~~~~g~~g~i~~-S~--- 105 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGN-----EGWIVGEPPIMLH-TT--- 105 (327)
T ss_dssp SCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETT-----EEEEEEETTEEEE-ES---
T ss_pred CcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCC-----eEEEEECCCeEEE-EC---
Confidence 45778888877877776554454 33333322 122211 0011235677888752 2444556665543 11
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
+.++....... .......+..|.+.+++. +++++ .+|.| |.....+..-...
T Consensus 106 --DgG~tW~~~~~----~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v--~~S~DgG~tW~~~------------------ 157 (327)
T 2xbg_A 106 --DGGQSWSQIPL----DPKLPGSPRLIKALGNGS-AEMIT-NVGAI--YRTKDSGKNWQAL------------------ 157 (327)
T ss_dssp --STTSSCEECCC----CTTCSSCEEEEEEEETTE-EEEEE-TTCCE--EEESSTTSSEEEE------------------
T ss_pred --CCCCCceECcc----ccCCCCCeEEEEEECCCC-EEEEe-CCccE--EEEcCCCCCCEEe------------------
Confidence 11222211110 000234567888877765 55544 45654 3322222211100
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeC--CCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDY--SKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQ 366 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~--~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~ 366 (548)
...+...+..+++.+++.+++.+...+.++-.|- .+-+.+. ......+..+.+.+++++++ .+.+|.++
T Consensus 158 ------~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~ 228 (327)
T 2xbg_A 158 ------VQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIA 228 (327)
T ss_dssp ------ECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEE
T ss_pred ------ecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEE
Confidence 0112356888999999888776654444444443 3333332 23446788999999987654 45678887
Q ss_pred EEECCCceeEEecc----CCCCCeEEEEEec
Q 008939 367 VWSMEDRKVVAWGE----GHNSWVSGVAFDS 393 (548)
Q Consensus 367 vwd~~~~~~~~~~~----~h~~~V~~v~~~p 393 (548)
+.+.+.++.-..+. .+...+..+.|.+
T Consensus 229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp EEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred EecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence 77533343322222 1234588899987
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.00 E-value=0.0029 Score=58.66 Aligned_cols=168 Identities=14% Similarity=0.143 Sum_probs=107.7
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+..++|+|++..++++...++.|+..|.. +.....++. . -......+++.+
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~l-----------------------~-g~~D~EGIa~~~ 79 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIPL-----------------------D-FVKDLETIEYIG 79 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEEC-----------------------S-SCSSEEEEEECS
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEec-----------------------C-CCCChHHeEEeC
Confidence 45799999999877567778888888888876 322211111 0 014577889998
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeE---EEeee------ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC---ceeEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQL---ICGGK------SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED---RKVVA 377 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~---~~~~~------~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~---~~~~~ 377 (548)
++.++++.-.++.+.++++..... +.... .....+..++|+|.++.|+++.+.....||.++. ...+.
T Consensus 80 ~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~ 159 (255)
T 3qqz_A 80 DNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELH 159 (255)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCE
T ss_pred CCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCcee
Confidence 887766655678899998764432 22221 1234568999999998777777665555555531 11111
Q ss_pred ec-------cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 378 WG-------EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 378 ~~-------~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.+ ..+...+.+++|+|. .+ .+++.......|..+|.. ++.+..+..
T Consensus 160 i~~~~~~~~~~~~~d~S~l~~dp~------tg------~lliLS~~s~~L~~~d~~-g~~~~~~~L 212 (255)
T 3qqz_A 160 ISKDKALQRQFTLDDVSGAEFNQQ------KN------TLLVLSHESRALQEVTLV-GEVIGEMSL 212 (255)
T ss_dssp EEECHHHHHTCCSSCCCEEEEETT------TT------EEEEEETTTTEEEEECTT-CCEEEEEEC
T ss_pred eecchhhccccccCCceeEEEcCC------CC------eEEEEECCCCeEEEEcCC-CCEEEEEEc
Confidence 11 113346789999982 44 677777788899999976 555554443
No 284
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.99 E-value=0.013 Score=56.15 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=94.6
Q ss_pred cceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC
Q 008939 231 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD 310 (548)
Q Consensus 231 ~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 310 (548)
.....++|.+++. ++++-..++.|+.||... .. ...+.. ...+.+++++++
T Consensus 32 ~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g--~~-------------------------~~~~~~-~~~p~gia~~~d 82 (306)
T 2p4o_A 32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDG--NQ-------------------------QIHATV-EGKVSGLAFTSN 82 (306)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEECTTC--CE-------------------------EEEEEC-SSEEEEEEECTT
T ss_pred CCcceEEECCCCC-EEEEeCCCCeEEEECCCC--ce-------------------------EEEEeC-CCCceeEEEcCC
Confidence 4567899999887 777766788998888653 10 111111 245889999999
Q ss_pred CCEEEEEECC-C-eEEEEeCCCCeEEEeeee-cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCcee-EEec-------
Q 008939 311 GTYLATVGRD-G-YLRVFDYSKEQLICGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV-VAWG------- 379 (548)
Q Consensus 311 g~~l~s~~~d-g-~v~vwd~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~-~~~~------- 379 (548)
++++++.... + .|..+|..+++....... .......++..+++..+++-..++.|.++|...++. +...
T Consensus 83 G~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 83 GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred CcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccc
Confidence 9866554432 2 477778777775432221 122234555556665555555688999999876431 2100
Q ss_pred --cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 380 --EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 380 --~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
...-.....| +| |+. .++++-...+.|..+|+..
T Consensus 163 ~~~~~~~~pngi--s~-------dg~-----~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 163 NSESVFPAANGL--KR-------FGN-----FLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp STTCCSCSEEEE--EE-------ETT-----EEEEEETTTTEEEEEEBCT
T ss_pred cccCCCCcCCCc--Cc-------CCC-----EEEEEeCCCCEEEEEEeCC
Confidence 1111234556 66 652 4667777788999999875
No 285
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.98 E-value=0.016 Score=57.06 Aligned_cols=243 Identities=10% Similarity=0.107 Sum_probs=158.1
Q ss_pred eEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccc
Q 008939 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK 214 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~ 214 (548)
+.-.+|..+.|+.-.+++++|+|+++ +..+....+.. .+..-.|-.+ + .+.=-.+..|+-|+++.. . .
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnle~--K~klks~~~~e-~VvfWkWis~----~-~l~lVT~taVyHWsi~~~--s--~ 137 (494)
T 1bpo_A 70 SAIMNPASKVIALKAGKTLQIFNIEM--KSKMKAHTMTD-DVTFWKWISL----N-TVALVTDNAVYHWSMEGE--S--Q 137 (494)
T ss_dssp EEEECSSSSCEEEEETTEEEEEETTT--TEEEEEEECSS-CCCEEEEEET----T-EEEEECSSEEEEEESSSS--C--C
T ss_pred eeeeCCCCcEEEEecCCeEEEEchHH--hhhhcceecCC-CceEEEecCC----C-eEEEEcCCeeEEecccCC--C--C
Confidence 35567888889988888999999998 55888888644 6777777544 1 233334568999999751 1 1
Q ss_pred ceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe------CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 215 KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH------ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
....|.+........|.....+++.++++++|- -.|.+.+|..+.
T Consensus 138 ---P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-------------------------- 188 (494)
T 1bpo_A 138 ---PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-------------------------- 188 (494)
T ss_dssp ---CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT--------------------------
T ss_pred ---chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc--------------------------
Confidence 112244444445678888888999996666654 347888998875
Q ss_pred CCCeeEeeecCCCeEEEEECCC---CCEEEEEECC---CeEEEEeCCCC---eE-----EEe-e-e--ecCCceEEEEEc
Q 008939 289 SNPIARWHICQGSINSIAFSTD---GTYLATVGRD---GYLRVFDYSKE---QL-----ICG-G-K--SYYGALLCCAWS 350 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~---g~~l~s~~~d---g~v~vwd~~~~---~~-----~~~-~-~--~~~~~v~~l~~s 350 (548)
+..+.+.+|.+....+.+.-+ .++++.+... +.++|.++... .. ... + . .-.+--.++..+
T Consensus 189 -~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs 267 (494)
T 1bpo_A 189 -KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 267 (494)
T ss_dssp -CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE
T ss_pred -cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEec
Confidence 334555566555544444321 1345555443 78999998532 11 111 1 1 112334577888
Q ss_pred cCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 351 MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 351 pdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
+.-..+..-..-|.|++||++++.++..-+--.+.|..-+.+. +. .=++.....|.|.--.+.....
T Consensus 268 ~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~-------~~------~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 268 EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-------AT------AGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp TTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET-------TT------TEEEEEETTCEEEEEEECTTTH
T ss_pred ccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccC-------CC------CcEEEEccCceEEEEEEccccc
Confidence 8777888889999999999999999887776667776655554 22 1266666888888777776655
Q ss_pred Ee
Q 008939 431 VV 432 (548)
Q Consensus 431 ~~ 432 (548)
+.
T Consensus 335 vp 336 (494)
T 1bpo_A 335 IP 336 (494)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.93 E-value=0.017 Score=55.66 Aligned_cols=185 Identities=11% Similarity=-0.018 Sum_probs=111.6
Q ss_pred EcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccc
Q 008939 195 LNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 195 ~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 274 (548)
+....|+.+++...... ...+.. ....+..++|.+.+..++++-...+.|+.++++.....
T Consensus 10 ~~~~~I~~i~l~~~~~~-~~~~~~----------~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~-------- 70 (318)
T 3sov_A 10 ANRRDLRLVDATNGKEN-ATIVVG----------GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV-------- 70 (318)
T ss_dssp ECEEEEEEEETTCTTSC-CEEEEE----------EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC--------
T ss_pred EccCeEEEEECCCCceE-EEEEec----------CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce--------
Confidence 34567888888762100 011111 12356789999976646666566788988888642110
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG 353 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg 353 (548)
.......-.....+++.+. +.++++-...+.|.++++........+.........+++.|.+
T Consensus 71 -----------------~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~ 133 (318)
T 3sov_A 71 -----------------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS 133 (318)
T ss_dssp -----------------CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG
T ss_pred -----------------EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC
Confidence 0011111145678899874 4444554567889999987443322232344567899999876
Q ss_pred CEEEEEe--CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 354 KYILTGG--EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 354 ~~l~sgs--~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
.+|+... ..+.|...+++.......+...-..-..|+++| ++. .++++-...+.|..+|+..
T Consensus 134 g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~-------~~~-----~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 134 GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDY-------EEQ-----KLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEET-------TTT-----EEEEEETTTTEEEEEETTS
T ss_pred CEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEec-------cCC-----EEEEEECCCCEEEEEcCCC
Confidence 6665554 357888888874332222222334568999998 552 5566666778899999864
No 287
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.93 E-value=0.0075 Score=61.49 Aligned_cols=258 Identities=15% Similarity=0.139 Sum_probs=140.3
Q ss_pred CceeEEeCCC-CCEEEEecC-C-eEEEEEccCCCCCCeEEEecC----CCCceEEEe-------cCCCCCCceEEEEEcC
Q 008939 132 SMTNTNFDGK-GTYIIFNVG-D-AIFISDLNSQDKDPIKSIHFS----NSNPVCHAF-------DQDAKDGHDLLIGLNS 197 (548)
Q Consensus 132 ~v~~~~~~~~-g~~l~~~~~-d-~v~vwd~~~~~~~~i~~~~~~----~~~~~~~~~-------~p~~~~~~~l~~g~~d 197 (548)
.+..++|+|. +..|.++.. . .|++.|++.. .+..+.-. ...+..++| +++ +..|+++...
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~---G~~lyvad~~ 213 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---MLSSPLNINTIPTNRIRSIAFNKKIEGYADE---AEYMIVAIDY 213 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---EEEEEECCTTSSCSBEEEEEECCCBTTTBCT---TCEEEEEECC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---EEEEEEccCccccCCCcEEEEeecccccCCC---CCEEEEEeCC
Confidence 4668999983 444444333 3 7888888753 34444322 125899999 888 6667777665
Q ss_pred C-------cEEEEEeee--cccc-cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcC------
Q 008939 198 G-------DVYSVSLRQ--QLQD-VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKS------ 261 (548)
Q Consensus 198 g-------~I~iwdl~~--~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~------ 261 (548)
+ .|++++... .... .....+. .-..+..++.+|++..++++-..++.|+.+|+.
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~----------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~ 283 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIA----------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTI 283 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEE----------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCCcccCceEEEEecCCCCceeecccceeec----------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccc
Confidence 4 255665322 0000 0001111 122456888999666477777788899999987
Q ss_pred -CCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEEEE-ECCCeEEEEeC--CCCeEE--
Q 008939 262 -KDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLATV-GRDGYLRVFDY--SKEQLI-- 334 (548)
Q Consensus 262 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~--~~~~~~-- 334 (548)
. +.......+.... .+ ..+ +.. .......++|+|++++|+.+ .....|+.+++ .++.+.
T Consensus 284 ~t-g~~~tp~~~~~~g-~~----------~~l--~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~ 349 (496)
T 3kya_A 284 KN-GGSWDPIVKNNPN-TF----------KQL--FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITP 349 (496)
T ss_dssp HT-TCCCCCBGGGCTT-TE----------EEE--EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCC
T ss_pred cC-ceeeccccccccc-cc----------cee--EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceeccc
Confidence 3 2110000000000 00 000 001 11346789999999965555 45678888665 333320
Q ss_pred Eeeeec---------------CCceE-EEEEc-------cCCCEEEEEeCCCeEEEEECCCceeEEeccCC---------
Q 008939 335 CGGKSY---------------YGALL-CCAWS-------MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH--------- 382 (548)
Q Consensus 335 ~~~~~~---------------~~~v~-~l~~s-------pdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h--------- 382 (548)
..+.+. ..... .++.. +++.++++-..++.|+.++ .++.. .++-+.
T Consensus 350 ~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~ 427 (496)
T 3kya_A 350 YNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADG 427 (496)
T ss_dssp EEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHS
T ss_pred EEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCc
Confidence 112111 11233 34444 5667777777788999998 44533 333211
Q ss_pred ---------------CCCeEEEEEecCCCCCCCC-CCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 383 ---------------NSWVSGVAFDSYWSQPNSD-GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 383 ---------------~~~V~~v~~~p~~~~~~~d-g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
-..-..|++++ + | .++++-.....|+.+++....++...
T Consensus 428 ~~~G~~dG~~~~~a~f~~P~gIavd~-------~~g------~lyVaD~~N~rIrki~~~~~~~~~~~ 482 (496)
T 3kya_A 428 NQWGTDDGDLREVARFRDVSGLVYDD-------VKE------MFYVHDQVGHTIRTISMEQEENVAGD 482 (496)
T ss_dssp CSCCCCCEETTTTCCCSSEEEEEEET-------TTT------EEEEEETTTTEEEEEEECCCC-----
T ss_pred cccccCCCCchhhhhcCCCcEEEEEC-------CCC------EEEEEeCCCCEEEEEECCCCcccccC
Confidence 12356788887 6 6 56666667788888888776665443
No 288
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.87 E-value=0.025 Score=60.00 Aligned_cols=235 Identities=7% Similarity=-0.039 Sum_probs=145.0
Q ss_pred CCEEEEecCCeEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeee
Q 008939 142 GTYIIFNVGDAIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAH 220 (548)
Q Consensus 142 g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~ 220 (548)
..+|+++....|+..+++... ....+.. .-..+..++|++.. +..+++-..++.|+.+++.... .+.+..
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~--~~~~~~~~~~~~~~~l~~d~~~--~~lywtD~~~~~I~r~~~~g~~---~~~v~~-- 76 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNN--NNVAIPLTGVKEASALDFDVTD--NRIYWTDISLKTISRAFMNGSA---LEHVVE-- 76 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTT--CEEECCCCSCSCEEEEEEETTT--TEEEEEETTTTEEEEEETTSCS---CEEEEC--
T ss_pred CcEEEEEeCCcEEEEECCCCC--cceEEEcCCCCceEEEEEECCC--CEEEEEECCCCeEEEEECCCCC---cEEEEe--
Confidence 357778877899999998643 3333332 22478899999872 3444455567889888876410 111110
Q ss_pred eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 221 HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 221 ~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
. .......|++.+.+.+++++-...+.|.+.+++.. ....+ ....-.
T Consensus 77 ----~---g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~--~~~~l------------------------~~~~l~ 123 (628)
T 4a0p_A 77 ----F---GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ--HRQVL------------------------VWKDLD 123 (628)
T ss_dssp ----S---SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST--TCEEE------------------------ECSSCC
T ss_pred ----C---CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC--cEEEE------------------------EeCCCC
Confidence 0 12356789998877756666666788998888631 11000 001124
Q ss_pred CeEEEEECCCCCEEEEEEC--CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCceeEE
Q 008939 301 SINSIAFSTDGTYLATVGR--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~~~~~ 377 (548)
....++++|...+|+.... .+.|...++......... ........|+++++++.|+.+ ...+.|..+|++.... .
T Consensus 124 ~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~ 201 (628)
T 4a0p_A 124 SPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-E 201 (628)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred CcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-E
Confidence 5789999996556665542 567888887643332222 344567899999987666655 4567899999975433 2
Q ss_pred eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 378 WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 378 ~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
.+...-....+|++.. + +++++-...+.|...|..+++....+
T Consensus 202 v~~~~l~~P~glav~~--------~------~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 202 VIADDLPHPFGLTQYQ--------D------YIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEEECCSCEEEEEEET--------T------EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EeeccCCCceEEEEEC--------C------EEEEecCCCCEEEEEECCCCCceEEE
Confidence 2332334456788753 3 56777777889999997776544333
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.84 E-value=0.0079 Score=58.05 Aligned_cols=205 Identities=16% Similarity=0.218 Sum_probs=124.2
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC----CCc--EEEEEeC---CCcEEEE
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG----GDG--AFVVGHA---DGNLYVY 258 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~----~~~--~l~s~~~---dg~v~vw 258 (548)
..+++.....+-+.+||+.. +.+. .. ..+.++.+..-|+ ++. ++++... +++|.+|
T Consensus 40 ~s~ii~t~k~~gL~Vydl~G------~~l~-~~--------~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf 104 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLDG------KMLH-SY--------NTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIY 104 (355)
T ss_dssp GCEEEEEETTTEEEEEETTS------CEEE-EE--------CCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEE
T ss_pred ccEEEEEcCCCCEEEEcCCC------cEEE-Ec--------cCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEE
Confidence 44566666778899999953 3322 11 1245566666552 221 2333333 5789999
Q ss_pred EcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE--CC-CCC-EEEEEECCCeEEEEeCC-----
Q 008939 259 EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF--ST-DGT-YLATVGRDGYLRVFDYS----- 329 (548)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--sp-~g~-~l~s~~~dg~v~vwd~~----- 329 (548)
+++............. .|+ ..--..+..+++ +| .++ ++++...+|.+..|++.
T Consensus 105 ~iDp~~~~l~~i~~~~---------------~pv---~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g 166 (355)
T 3amr_A 105 AIDGKNGTLQSMTDPD---------------HPI---ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG 166 (355)
T ss_dssp EECTTTCCEEECSCTT---------------SCE---ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS
T ss_pred EECCCCCceeeccccc---------------cCc---CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC
Confidence 8853222111110000 000 000145667777 77 354 67778889999999983
Q ss_pred --CCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC-----CceeEEecc-CC-CCCeEEEEEecCCCCCCC
Q 008939 330 --KEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME-----DRKVVAWGE-GH-NSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 330 --~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~-----~~~~~~~~~-~h-~~~V~~v~~~p~~~~~~~ 400 (548)
+.+++.++.- .+.+..|...+....|+.+-++.-|..++.+ +++.+..+. ++ ...+..|+.-+. .
T Consensus 167 ~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~-----~ 240 (355)
T 3amr_A 167 YISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYA-----A 240 (355)
T ss_dssp CEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEEC-----G
T ss_pred cccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEec-----C
Confidence 3356666664 4578889999988899999999777777755 355665553 22 346888888530 0
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECC-CCeEEeeee
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLE-MDEIVVPLR 435 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~-~~~~~~~~~ 435 (548)
+| ..++|+++-.+..+.+||.+ +.+.+..+.
T Consensus 241 ~g----~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 241 DG----KGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp GG----CEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred CC----CEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 33 11566666678899999997 566666654
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.83 E-value=0.013 Score=59.13 Aligned_cols=200 Identities=13% Similarity=0.096 Sum_probs=114.4
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC--
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-- 252 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d-- 252 (548)
.+..++|+|++. ...|+++...+.|+.+|+.. ..+..... .......|+|++++. ++++-...
T Consensus 140 ~P~gvavd~~s~-~g~Lyv~D~~~~I~~id~~~------g~v~~~~~-------~~~~P~giavd~dG~-lyVad~~~~~ 204 (433)
T 4hw6_A 140 NIWRMMFDPNSN-YDDLYWVGQRDAFRHVDFVN------QYVDIKTT-------NIGQCADVNFTLNGD-MVVVDDQSSD 204 (433)
T ss_dssp CCCEEEECTTTT-TCEEEEECBTSCEEEEETTT------TEEEEECC-------CCSCEEEEEECTTCC-EEEEECCSCT
T ss_pred CCceEEEccccC-CCEEEEEeCCCCEEEEECCC------CEEEEeec-------CCCCccEEEECCCCC-EEEEcCCCCc
Confidence 578999998411 23466665558899998754 11211111 244678999999998 55554321
Q ss_pred -Cc-EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCC
Q 008939 253 -GN-LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYS 329 (548)
Q Consensus 253 -g~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~ 329 (548)
.. +..++... .... ...+. .-.....++++| ++.++++-..++.|+.+|..
T Consensus 205 ~~~gv~~~~~~~--~~~~-----------------------~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 205 TNTGIYLFTRAS--GFTE-----------------------RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp TSEEEEEECGGG--TTCC-----------------------EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred ccceEEEEECCC--Ceec-----------------------ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence 11 22222211 1000 00011 124456789999 67666665567889999998
Q ss_pred CCeEEEeeee--cCCceEEEEEccCCCEEE-EEeCCCeEEEEECC--Ccee--EEeccCC---------------CCCeE
Q 008939 330 KEQLICGGKS--YYGALLCCAWSMDGKYIL-TGGEDDLVQVWSME--DRKV--VAWGEGH---------------NSWVS 387 (548)
Q Consensus 330 ~~~~~~~~~~--~~~~v~~l~~spdg~~l~-sgs~dg~I~vwd~~--~~~~--~~~~~~h---------------~~~V~ 387 (548)
+++....+.. ....-..++|+|++++|+ +-...+.|+.++++ ++.. ...+.+. -..-.
T Consensus 259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~ 338 (433)
T 4hw6_A 259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPN 338 (433)
T ss_dssp TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEE
T ss_pred CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCc
Confidence 7765222221 122334699999999554 44557899998875 2321 1111111 12356
Q ss_pred EEEE---------ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 388 GVAF---------DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 388 ~v~~---------~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
.+++ .+ +| .++++-...++|+.++. .+.
T Consensus 339 giav~~n~~y~~dd~-------~g------~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 339 QGIFVKNEAYAGEED-------EY------DFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEEECGGGTTSSC-------CE------EEEEEETTTTEEEEECT-TSE
T ss_pred cEEEEccccccccCC-------CC------cEEEEECCCCEEEEECC-CCC
Confidence 6888 55 55 56666667788888884 453
No 291
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.81 E-value=0.067 Score=60.81 Aligned_cols=118 Identities=13% Similarity=0.169 Sum_probs=70.5
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCC---CCceEEEEEc-CCcEEEEEee
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAK---DGHDLLIGLN-SGDVYSVSLR 206 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~---~~~~l~~g~~-dg~I~iwdl~ 206 (548)
..|..++.+. .+++.+.++.+.+++++.++...+....+ +..+.|+++.|... ....+++|.. |+.|+|+++.
T Consensus 514 ~~I~~As~n~--~~vvva~g~~l~~fel~~~~L~~~~~~~l-~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 514 KNISVASCNS--SQVVVAVGRALYYLQIHPQELRQISHTEM-EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCEEEECS--SEEEEEETTEEEEEEEETTEEEEEEEEEC-SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEeCC--CEEEEEECCEEEEEEeeCCceeeecccCC-CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 3455555443 35555566677777777543233444444 56899999987532 2578999997 9999999987
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEec-CCCcEEEEEeCCCcEEEEEcCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSK 262 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~s~~~dg~v~vwd~~~ 262 (548)
. .+.+ ...... ......++.+.. ++..+|.+|-.||.+.-+.++.
T Consensus 591 ~-----l~~~-~~~~L~-----~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~ 636 (1158)
T 3ei3_A 591 S-----FELL-HKEMLG-----GEIIPRSILMTTFESSHYLLCALGDGALFYFGLNI 636 (1158)
T ss_dssp T-----CCEE-EEEECC-----SSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECT
T ss_pred C-----CCeE-EEEECC-----CCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcC
Confidence 4 1211 111110 112233343332 2333788999999988777653
No 292
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.77 E-value=0.0087 Score=58.71 Aligned_cols=238 Identities=9% Similarity=0.042 Sum_probs=119.2
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe---cCCCCceEEEecCCCCCCceEEEEEcC------CcEE
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH---FSNSNPVCHAFDQDAKDGHDLLIGLNS------GDVY 201 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~---~~~~~~~~~~~~p~~~~~~~l~~g~~d------g~I~ 201 (548)
..+..++|+|+|+++++.....|++++ .+..+.+..+. .....+..++|+|+-.++..|+++... +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 346789999999987776666888888 32222232222 123578999999974444556666553 5688
Q ss_pred EEEeeecccccccceeeeeeecc-CCcccCcceEEEEEecCCCcEEEEEeCC-------------CcEEEEEcCCCCCCC
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNK-DGSVNNSRCTSVTWVPGGDGAFVVGHAD-------------GNLYVYEKSKDGAGD 267 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~l~s~~~d-------------g~v~vwd~~~~~~~~ 267 (548)
.|++........+.+... +.. ....|. ...|+|.|++. ++++-+.. |.|.-++. ++...
T Consensus 109 r~~~~~~~~~~~~~l~~~--~p~~~~~~h~--~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~--dG~~p 181 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDG--IPARPHGLHS--GGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTP--EGEPA 181 (352)
T ss_dssp EEEECSSCEEEEEEEEEE--ECCCTTCCCC--CCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECT--TSSBC
T ss_pred EEEeCCCCcCceEEEEEe--CCCCCCCCcC--CceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcC--CCCCC
Confidence 887753110011111111 111 111232 36899999997 55543221 33443333 22111
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCe--------EEEEeCCCCe------
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGY--------LRVFDYSKEQ------ 332 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~--------v~vwd~~~~~------ 332 (548)
...+.... .......|...-.....++|+| ++.++++-..... |.+. ..+.
T Consensus 182 ~~npf~~~------------~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~ 247 (352)
T 2ism_A 182 PGNPFLGR------------RGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPR 247 (352)
T ss_dssp TTCTTTTC------------TTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTT
T ss_pred CCCcccCC------------CCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCc
Confidence 00000000 0001111221123467799999 6665554332222 3332 2221
Q ss_pred ------------EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCcee------EEeccCCCCCeEEEEEec
Q 008939 333 ------------LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV------VAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 333 ------------~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~------~~~~~~h~~~V~~v~~~p 393 (548)
.+..+. +......++| .+|.++++.-..+.|...+++.... ...+..-...+..|++.|
T Consensus 248 ~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p 324 (352)
T 2ism_A 248 VVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGP 324 (352)
T ss_dssp CCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECT
T ss_pred ccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECC
Confidence 111221 1223556777 4677666666677888887764321 122212235688899998
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.67 E-value=0.00017 Score=77.94 Aligned_cols=239 Identities=8% Similarity=-0.054 Sum_probs=132.1
Q ss_pred EEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEE-EcCCcEEEEEeeecccccccceeeeeee
Q 008939 144 YIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIG-LNSGDVYSVSLRQQLQDVGKKLVGAHHY 222 (548)
Q Consensus 144 ~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g-~~dg~I~iwdl~~~~~~~~~~~~~~~~~ 222 (548)
+++++....|++.++.... +..+......+..++|++. ...|+.. ...+.|+.+++...........+ .
T Consensus 379 ~ll~~~~~~I~~id~~~~~---~~~~~~~~~~p~gla~d~~---~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~--i-- 448 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSE---YTSLIPNLRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--I-- 448 (699)
T ss_dssp CBCCCCTTC-CEECTTSCC---EECCSCCCTTCCCCEEETT---TTEEEECCTTTTSBEEEESCCCCC-CCCCCB--C--
T ss_pred eEEecCccceEEEeCCCCc---ceeeeccCcceEEEccccc---cCeEEEEecCCCeEEEEecCCCCCCcceEEE--E--
Confidence 3444455578888887633 2222223457788999886 4445544 45578988887641000000000 0
Q ss_pred ccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCe
Q 008939 223 NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI 302 (548)
Q Consensus 223 ~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 302 (548)
. ........|++.+.+.+++++-...+.|.++++... .... .+.......
T Consensus 449 -~---~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~--~~~~------------------------l~~~~~~~P 498 (699)
T 1n7d_A 449 -S---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV--KRKT------------------------LFREQGSKP 498 (699)
T ss_dssp -C---SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC--CEEE------------------------ECCCSSCCC
T ss_pred -e---CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC--ceEE------------------------EEeCCCCCc
Confidence 0 011234567887655535555556788888887631 1000 000011345
Q ss_pred EEEEECCCCCEEEEEEC--CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEE-EEEeCCCeEEEEECCCceeEEec
Q 008939 303 NSIAFSTDGTYLATVGR--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI-LTGGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 303 ~~~~~sp~g~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l-~sgs~dg~I~vwd~~~~~~~~~~ 379 (548)
..++++|.+.+|+.... .+.|.++++........+.........|+|+|++..| ++-...+.|.++|+........+
T Consensus 499 ~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~ 578 (699)
T 1n7d_A 499 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 578 (699)
T ss_dssp CCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEEC
T ss_pred ceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEE
Confidence 67889986555555432 2678887775322211122223446689999976544 45556789999999754333222
Q ss_pred c--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 380 E--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 380 ~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
. ........|++.. + .++++....+.|..+|..+++.+..+..
T Consensus 579 ~~~~~~~~P~glavd~-------~-------~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 579 EDEKRLAHPFSLAVFE-------D-------KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp CCSSSCSSCCCCEEET-------T-------EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred ecCCcCCCceEeEEEC-------C-------EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 2 1122334566653 3 4667777788999999988888776654
No 294
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=0.002 Score=65.27 Aligned_cols=155 Identities=8% Similarity=0.093 Sum_probs=98.2
Q ss_pred cceEEEEEec-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 231 SRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 231 ~~v~~l~~~p-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
.....|+|+| ++. .|+++...+.|+.+|+... .+..+.........++|++
T Consensus 137 ~~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~---------------------------~v~~~~~~~~~P~~ia~d~ 188 (430)
T 3tc9_A 137 GGAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKE---------------------------YVSTVYSGLSKVRTICWTH 188 (430)
T ss_dssp SCCCEEEEETTEEE-EEEEEEBTEEEEEEETTTT---------------------------EEEEEECCCSCEEEEEECT
T ss_pred CCCCEEEECCCCCC-eEEEEeCCCcEEEEECCCC---------------------------EEEEEecCCCCcceEEEeC
Confidence 3567899998 344 5666655588888887641 1111111235688999999
Q ss_pred CCCEEEEEECC-C----eEEEEeCCCCeEE--EeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCCceeEEecc-
Q 008939 310 DGTYLATVGRD-G----YLRVFDYSKEQLI--CGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWGE- 380 (548)
Q Consensus 310 ~g~~l~s~~~d-g----~v~vwd~~~~~~~--~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~~~~~~~~- 380 (548)
++++|+++... + .+.+++.. +... ..+.. ......++++| ++.++++-..++.|..++...+.......
T Consensus 189 ~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~ 266 (430)
T 3tc9_A 189 EADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI 266 (430)
T ss_dssp TSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc
Confidence 99966666542 1 23334432 3221 22222 33466789999 77777777678899999998765422222
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+....-..|+|+| +|. +++++-...+.|..+|...
T Consensus 267 ~~~~~P~gia~~p-------dG~-----~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 267 QDSGWEFHIQFHP-------SGN-----YAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSSSCCEEEEECT-------TSS-----EEEEEETTTTEEEEEEEET
T ss_pred CCCCcceeEEEcC-------CCC-----EEEEEECCCCEEEEEeCCc
Confidence 1234678999999 882 2566666788999988763
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.64 E-value=0.053 Score=55.22 Aligned_cols=164 Identities=14% Similarity=0.126 Sum_probs=93.1
Q ss_pred CceEEEecCCCCCCceEEEEEc-CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEE-------ecCCCcEE
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLN-SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTW-------VPGGDGAF 246 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-------~p~~~~~l 246 (548)
.+..++|+|.. ...|+++.. .+.|+++|+.. +.+..... .+.........|+| ++++. .|
T Consensus 140 ~p~~la~dp~~--~~~Lyv~~~~~~~i~~ID~~~------~~v~~l~~---~~~~~~~~p~~ia~~~~~~~~d~~G~-~l 207 (496)
T 3kya_A 140 DNGRLAFDPLN--KDHLYICYDGHKAIQLIDLKN------RMLSSPLN---INTIPTNRIRSIAFNKKIEGYADEAE-YM 207 (496)
T ss_dssp SEEEEEEETTE--EEEEEEEEETEEEEEEEETTT------TEEEEEEC---CTTSSCSBEEEEEECCCBTTTBCTTC-EE
T ss_pred CCCEEEEccCC--CCEEEEEECCCCeEEEEECCC------CEEEEEEc---cCccccCCCcEEEEeecccccCCCCC-EE
Confidence 57789999831 334555544 46688888765 22222111 11112346899999 99998 55
Q ss_pred EEEeCCC-c------EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEE
Q 008939 247 VVGHADG-N------LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVG 318 (548)
Q Consensus 247 ~s~~~dg-~------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~ 318 (548)
+++...+ . |++++...++....... . ..+..+ .....++++|+ +.++++-.
T Consensus 208 yvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~----~-------------~~v~~~----~~p~giavdp~~g~LYvtd~ 266 (496)
T 3kya_A 208 IVAIDYDGKGDESPSVYIIKRNADGTFDDRSD----I-------------QLIAAY----KQCNGATIHPINGELYFNSY 266 (496)
T ss_dssp EEEECCCTTGGGEEEEEEEECCTTSCCSTTSC----E-------------EEEEEE----SCCCCEEECTTTCCEEEEET
T ss_pred EEEeCCCCCcccCceEEEEecCCCCceeeccc----c-------------eeeccC----CCceEEEEcCCCCeEEEEEC
Confidence 5555443 2 66666333222110000 0 001111 23457889994 55555666
Q ss_pred CCCeEEEEeCC-------CCeE-----------EEe-ee-ecCCceEEEEEccCCCEE-EEEeCCCeEEEEECC
Q 008939 319 RDGYLRVFDYS-------KEQL-----------ICG-GK-SYYGALLCCAWSMDGKYI-LTGGEDDLVQVWSME 371 (548)
Q Consensus 319 ~dg~v~vwd~~-------~~~~-----------~~~-~~-~~~~~v~~l~~spdg~~l-~sgs~dg~I~vwd~~ 371 (548)
.++.|..+|+. ++.. ... +. ........|+|+|+|++| ++-...+.|+.++..
T Consensus 267 ~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 267 EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 78889999997 5543 111 11 123446789999999954 444567899996653
No 296
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.64 E-value=0.11 Score=56.36 Aligned_cols=166 Identities=5% Similarity=-0.092 Sum_probs=103.5
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+..|+|.+....++++-...+.|+.+++...... . .....+.........|++.+
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-~---------------------~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-S---------------------SYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------------------------CEEEECSSCSCCCEEEEET
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-c---------------------ceeEEEecCCCCcceeeeee
Confidence 4567899999976645666666788888887641100 0 00111111124567899988
Q ss_pred CCCEEEE-EECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe-CC-CeEEEEECCCceeEEeccCCCCCe
Q 008939 310 DGTYLAT-VGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG-ED-DLVQVWSMEDRKVVAWGEGHNSWV 386 (548)
Q Consensus 310 ~g~~l~s-~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs-~d-g~I~vwd~~~~~~~~~~~~h~~~V 386 (548)
.+..|+. -...+.|.+.++........+.........|++.|.+.+|+... .+ +.|.+.+++.......+...-.+.
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P 560 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 560 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCc
Confidence 6655554 44678999999975543333333445688999999766665554 33 789999987554444444344678
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
..|++++ .+. +++++-.....|...|+....
T Consensus 561 ~GLavD~-------~~~-----~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 561 NGITLDL-------LSG-----RLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp EEEEEET-------TTT-----EEEEEETTTTEEEEEETTSCS
T ss_pred eEEEEec-------CCC-----eEEEEeCCCCcEEEEecCCCc
Confidence 8999987 431 555665667788888886543
No 297
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.62 E-value=0.046 Score=53.51 Aligned_cols=238 Identities=11% Similarity=0.095 Sum_probs=121.5
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe---cCCCCceEEEecCCCCCCceEEEEEcC--------Cc
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH---FSNSNPVCHAFDQDAKDGHDLLIGLNS--------GD 199 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~---~~~~~~~~~~~~p~~~~~~~l~~g~~d--------g~ 199 (548)
..+..++|.|+|+++++.....|+++|- .+. +.+..+. .....+..++|+|+-.++..|+++... +.
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3456899999999777766678888873 322 2333221 123468999999974444556666542 56
Q ss_pred EEEEEeeecc--cccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc-----------EEEEEcCCCCCC
Q 008939 200 VYSVSLRQQL--QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN-----------LYVYEKSKDGAG 266 (548)
Q Consensus 200 I~iwdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~-----------v~vwd~~~~~~~ 266 (548)
|..|++.... ....+.+... +. ....| ....|+|.|++. ++++-+..+. =+|+.++.++..
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~--~~-~~~~h--~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDG--IP-GAYIH--NGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEE--EE-CCSSC--CCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred EEEEEECCCCcCcCccEEEEEc--CC-CCCCc--CCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 7777765420 0001111111 11 11123 246799999997 5555322111 023333322221
Q ss_pred CCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCC---eEEEEeCCC--------C---
Q 008939 267 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDG---YLRVFDYSK--------E--- 331 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg---~v~vwd~~~--------~--- 331 (548)
...-+. . ....|..--.....++|+| +++++++-.... .|.+..--. +
T Consensus 181 p~~npf-~----------------~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~ 243 (354)
T 3a9g_A 181 PADNPF-P----------------NSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAG 243 (354)
T ss_dssp CTTSSS-T----------------TCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCC
T ss_pred CCCCCC-C----------------CCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCC
Confidence 000000 0 0112222124466899999 666555432211 233322100 0
Q ss_pred -----eEEEeeeecCCceEEEEEc-------cCCCEEEEEeCCCeEEEEECCCc-eeE--Ee-ccCCCCCeEEEEEec
Q 008939 332 -----QLICGGKSYYGALLCCAWS-------MDGKYILTGGEDDLVQVWSMEDR-KVV--AW-GEGHNSWVSGVAFDS 393 (548)
Q Consensus 332 -----~~~~~~~~~~~~v~~l~~s-------pdg~~l~sgs~dg~I~vwd~~~~-~~~--~~-~~~h~~~V~~v~~~p 393 (548)
..+..+.........++|. .+|.++++.-..+.|...+++.. +.. .. +.+-...+..|++.|
T Consensus 244 ~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p 321 (354)
T 3a9g_A 244 RGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD 321 (354)
T ss_dssp CTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT
T ss_pred CCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC
Confidence 1122221112356778883 57777777767788999998753 222 22 333345788999998
No 298
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.56 E-value=0.021 Score=60.46 Aligned_cols=236 Identities=6% Similarity=-0.045 Sum_probs=133.2
Q ss_pred CEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcEEEEEeeecccccccceeeeee
Q 008939 143 TYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSVSLRQQLQDVGKKLVGAHH 221 (548)
Q Consensus 143 ~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iwdl~~~~~~~~~~~~~~~~ 221 (548)
.+++....+.|++.++.....+. ..+.-.-..+..++|++. +..|+... ..+.|+.+++... .....+..
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~~~~-~~~~~~~~~~~~ld~~~~---~~~ly~sD~~~~~I~r~~~~g~--~~~~~v~~--- 80 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGKENA-TIVVGGLEDAAAVDFVFS---HGLIYWSDVSEEAIKRTEFNKT--ESVQNVVV--- 80 (619)
T ss_dssp CCEEEECSSBEEEECCC----------CBCCSCEEEEEEETT---TTEEEEEETTTTEEEEEEC-------CEEEEC---
T ss_pred ceEEEeccccEEEEeCCCCcceE-EEEEcCCCceEEEEEEeC---CCEEEEEECCCCeEEEEEccCC--CceEEEEe---
Confidence 34666677789999998632112 222223457889999987 44455444 4677888887652 00011110
Q ss_pred eccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCC
Q 008939 222 YNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS 301 (548)
Q Consensus 222 ~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 301 (548)
. .......|++.+.+.+++++-...+.|.+.+++.. ....+ ....-..
T Consensus 81 ---~---~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~--~~~~l------------------------~~~~l~~ 128 (619)
T 3s94_A 81 ---S---GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS--LRKVL------------------------FWQELDQ 128 (619)
T ss_dssp ---S---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEE------------------------ECSSCSC
T ss_pred ---C---CCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC--CEEEE------------------------EeCCCCC
Confidence 0 12467899999977746666667789999998641 11000 0011245
Q ss_pred eEEEEECCCCCEEEEEEC--CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCceeEEe
Q 008939 302 INSIAFSTDGTYLATVGR--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 302 v~~~~~sp~g~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~~~~~~ 378 (548)
...++++|.+.+|+.... .+.|...++..................|+++++++.|+.+ ...+.|..+|++.......
T Consensus 129 P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~ 208 (619)
T 3s94_A 129 PRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV 208 (619)
T ss_dssp CCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--
T ss_pred CceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEE
Confidence 678999997556665553 4577777776332222222334567899999976665555 4567899999875443322
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
+.+.-....+|++.. + +++.+-...+.|...|..+++.+..
T Consensus 209 ~~~~~~~P~gi~~~~-------~-------~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 209 VKGSLPHPFALTLFE-------D-------ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp -------CCCEEESS-------S-------EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred EeCCCCCceEEEEeC-------C-------EEEEecCCCCEEEEEECCCCcccEE
Confidence 221222234566654 2 4666666778899999877754433
No 299
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.52 E-value=0.08 Score=51.58 Aligned_cols=200 Identities=14% Similarity=0.098 Sum_probs=111.8
Q ss_pred ceeEEeCCCCCEEEEe-------------cCCeEEEEEccCCCCCCeEEEecCC-------CCceEEEecCCCCCCceEE
Q 008939 133 MTNTNFDGKGTYIIFN-------------VGDAIFISDLNSQDKDPIKSIHFSN-------SNPVCHAFDQDAKDGHDLL 192 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~-------------~~d~v~vwd~~~~~~~~i~~~~~~~-------~~~~~~~~~p~~~~~~~l~ 192 (548)
...+...++|..++++ ....|.++|+++... ....+.... -.+..+.+.++..+..+|+
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~-~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP-AVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSC-CEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCC-ceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 3456678887666655 233899999885321 233444332 3778888877522222455
Q ss_pred EEE-c--CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe---C--------------C
Q 008939 193 IGL-N--SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH---A--------------D 252 (548)
Q Consensus 193 ~g~-~--dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~---~--------------d 252 (548)
++. . +..|.+|+++.. .........+.. . .-...+++.+.++|. +.++.. . .
T Consensus 131 Vvnh~~~~s~ielf~~d~~----~~~~~~~~~~~g--~-~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEE----EKSLLHLKTIRH--K-LLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp EEECSTTCCEEEEEEEETT----TTEEEEEEEECC--T-TCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred EEECCCCCCeEEEEEEECC----CCEEEEEecccc--C-CCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCc
Confidence 543 3 356888887642 111111111111 1 235689999999987 444432 1 1
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCC-
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSK- 330 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~- 330 (548)
|.|+.+|.. .+..+...-...+.++|+||++.|+.+. ..+.|..|++..
T Consensus 203 g~vyr~d~~-----------------------------~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~ 253 (355)
T 3sre_A 203 SFVTYYSPN-----------------------------DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN 253 (355)
T ss_dssp EEEEEECTT-----------------------------CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred cEEEEEECC-----------------------------eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC
Confidence 333333321 0111111124578999999998887765 568899999863
Q ss_pred CeE--EEeeeecCCceEEEEEcc-CCCEEEEEeCC-CeEEEEECC
Q 008939 331 EQL--ICGGKSYYGALLCCAWSM-DGKYILTGGED-DLVQVWSME 371 (548)
Q Consensus 331 ~~~--~~~~~~~~~~v~~l~~sp-dg~~l~sgs~d-g~I~vwd~~ 371 (548)
+++ ...+ ...+..-.+++.+ +|++.+++..+ +.|..||-+
T Consensus 254 g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 254 WTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp SCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 332 1223 2345567788998 59877766533 345555544
No 300
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.49 E-value=0.031 Score=54.06 Aligned_cols=234 Identities=15% Similarity=0.125 Sum_probs=121.9
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCC-CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQD-KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~-~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
...+..+.|++ +..++.+....|+. ..+.+. ...+......+..+..+.+.++ +. ++++..+|.|+.-
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~---~~-~~~~~~~g~v~~S----- 147 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGN---GS-AEMITNVGAIYRT----- 147 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEET---TE-EEEEETTCCEEEE-----
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECC---CC-EEEEeCCccEEEE-----
Confidence 34567788876 44444443334433 223222 1121111012334666766554 33 4444556655321
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
.+.++....... .....+..+.+.|++. +++++ .+|.++.-+ +..+..-... .
T Consensus 148 -~DgG~tW~~~~~------~~~~~~~~~~~~~~~~-~~~~g-~~G~~~~S~-d~gG~tW~~~---~-------------- 200 (327)
T 2xbg_A 148 -KDSGKNWQALVQ------EAIGVMRNLNRSPSGE-YVAVS-SRGSFYSTW-EPGQTAWEPH---N-------------- 200 (327)
T ss_dssp -SSTTSSEEEEEC------SCCCCEEEEEECTTSC-EEEEE-TTSSEEEEE-CTTCSSCEEE---E--------------
T ss_pred -cCCCCCCEEeec------CCCcceEEEEEcCCCc-EEEEE-CCCcEEEEe-CCCCCceeEC---C--------------
Confidence 122222221111 1345688999999877 55555 456554432 1101111000 0
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee----cCCceEEEEEccCCCEEEEEeCCCe
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS----YYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~----~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
......+..+.+.++++++ .++.+|.+++.+...++.-..+.. ....+.++++.+++++++++. ++.
T Consensus 201 -------~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~ 271 (327)
T 2xbg_A 201 -------RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGA 271 (327)
T ss_dssp -------CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTC
T ss_pred -------CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCe
Confidence 0112567889999988755 455788887764332332222221 223588999998887766664 666
Q ss_pred EEEEECCCceeEEecc---CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 365 VQVWSMEDRKVVAWGE---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
| ++..+.++.-..+. .+...+..|.|.+ ++ .++.++.+|.|.-++-
T Consensus 272 i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-------~~-------~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 272 L-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-------PD-------QGFILGQKGILLRYVT 320 (327)
T ss_dssp E-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-------TT-------EEEEECSTTEEEEECC
T ss_pred E-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-------CC-------ceEEEcCCceEEEEcC
Confidence 6 45555454333332 2345678899976 55 5777888998877653
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.46 E-value=0.027 Score=54.34 Aligned_cols=211 Identities=14% Similarity=0.141 Sum_probs=123.0
Q ss_pred CCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCC-CCc--eEEEEEc----CCcEEEEEeeeccccc
Q 008939 141 KGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAK-DGH--DLLIGLN----SGDVYSVSLRQQLQDV 212 (548)
Q Consensus 141 ~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~-~~~--~l~~g~~----dg~I~iwdl~~~~~~~ 212 (548)
...+++....+ .|.|||+. + +.+..+.. ..+.-+...|.-. .+. .|++++. +++|.+|++....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~-G--~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~--- 110 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD-G--KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--- 110 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT-S--CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT---
T ss_pred CccEEEEEcCCCCEEEEcCC-C--cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC---
Confidence 34444443333 99999994 3 36666643 4666666666311 011 1444443 4679999885210
Q ss_pred ccceeeeeeeccCCcccCcceEEEEE--ecC-CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTW--VPG-GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~--~p~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
+++................+..+++ +|. +..++++...+|.+..|++...+..... .
T Consensus 111 -~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~-------------------~ 170 (355)
T 3amr_A 111 -GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS-------------------G 170 (355)
T ss_dssp -CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE-------------------E
T ss_pred -CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc-------------------c
Confidence 1111110000000001256677777 664 4336888888999999998542211110 1
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC-----CCeEEEeee-e-cCCceEEEEE--ccCCC-EEEEE
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS-----KEQLICGGK-S-YYGALLCCAW--SMDGK-YILTG 359 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~-----~~~~~~~~~-~-~~~~v~~l~~--spdg~-~l~sg 359 (548)
+.++.+... +.+..|...+....|+.+-++.-|..++.+ +++++..+. + ....+..|++ .++++ +|++.
T Consensus 171 ~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS 249 (355)
T 3amr_A 171 KKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS 249 (355)
T ss_dssp EEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE
T ss_pred eEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE
Confidence 234444443 578899999988899999998777777755 345554432 1 2236777877 55666 56665
Q ss_pred e-CCCeEEEEECC-CceeEEecc
Q 008939 360 G-EDDLVQVWSME-DRKVVAWGE 380 (548)
Q Consensus 360 s-~dg~I~vwd~~-~~~~~~~~~ 380 (548)
+ .+....+||.+ +.+.+..|.
T Consensus 250 sQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 250 SQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EGGGTEEEEEESSTTCCEEEEEE
T ss_pred cCCCCEEEEEECCCCCcEEEEEE
Confidence 5 57899999997 566666663
No 302
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.44 E-value=0.0088 Score=56.99 Aligned_cols=105 Identities=13% Similarity=0.173 Sum_probs=59.8
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCceeEE
Q 008939 310 DGTYLATVGRD-----GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRKVVA 377 (548)
Q Consensus 310 ~g~~l~s~~~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~~~~ 377 (548)
++++++.|+.+ ..+.+||+.+.+-... +........++. -++++++.|+.+ ..+.+||+++.+-..
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 56677777654 4588999987754322 111111112222 266777777764 468999998765432
Q ss_pred --eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCCeEE
Q 008939 378 --WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDEIV 431 (548)
Q Consensus 378 --~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~~~~ 431 (548)
.+.........+.+ ++ ++++.++.+ ..|.+||+++.+-.
T Consensus 237 ~~~~p~~r~~~~~~~~---------~~------~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 237 VTSMTTPRCYVGATVL---------RG------RLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp ECCCSSCCBSCEEEEE---------TT------EEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred CCCCCCcccceeEEEE---------CC------EEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 22222222233333 55 577777765 46788888876543
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.35 E-value=0.0075 Score=57.70 Aligned_cols=163 Identities=12% Similarity=0.175 Sum_probs=106.0
Q ss_pred ceEEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE---
Q 008939 232 RCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF--- 307 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--- 307 (548)
-..+++|.+... .|+.++ ..+.|..||...+......++... +..++ ...+..+.|
T Consensus 14 yPE~~~wd~~~g-~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s------------~~g~~-------~~~~sGl~~~~~ 73 (334)
T 2p9w_A 14 TPEDTIYDRTRQ-VFYQSNLYKGRIEVYNPKTQSHFNVVIDGAS------------SNGDG-------EQQMSGLSLLTH 73 (334)
T ss_dssp CCSCEEEETTTT-EEEEEETTTTEEEEECTTTCCEEEECCTTTC------------CSSCC-------SEEEEEEEESSS
T ss_pred CCcCccCcCCCC-EEEEEeccCCEEEEEcCCCCeEEEEecCCcc------------ccCCC-------cceeeEEEEecc
Confidence 345789998776 566655 789999999864211111111000 00000 013578999
Q ss_pred CCCCCEEEEEEC-------------CCeEEEEeCC---CCeEEEeee--e-----------cCCceEEEEEccCCCEEEE
Q 008939 308 STDGTYLATVGR-------------DGYLRVFDYS---KEQLICGGK--S-----------YYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 308 sp~g~~l~s~~~-------------dg~v~vwd~~---~~~~~~~~~--~-----------~~~~v~~l~~spdg~~l~s 358 (548)
.|+++++++... +..|..||+. +++.+.... . -......++..++|+..++
T Consensus 74 D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt 153 (334)
T 2p9w_A 74 DNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA 153 (334)
T ss_dssp SSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE
T ss_pred CCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe
Confidence 688777775442 6789999999 777654432 1 1134889999999999998
Q ss_pred EeCC-CeEEEEECCCceeEEecc-----CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 359 GGED-DLVQVWSMEDRKVVAWGE-----GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 359 gs~d-g~I~vwd~~~~~~~~~~~-----~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
++.- +.|..++.+.......+. ......+.|+++| || ++|+....++.|..+|+..
T Consensus 154 ~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p-------dg------~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 154 FALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP-------HS------NKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET-------TT------TEEEEESSSSSEEEEECSS
T ss_pred CCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC-------CC------CEEEEEcCCCeEEEEcCCC
Confidence 8888 888887776443332221 1122367999999 98 5676666699999999884
No 304
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.35 E-value=0.12 Score=49.50 Aligned_cols=177 Identities=8% Similarity=0.068 Sum_probs=105.5
Q ss_pred EecCCCCceEEEecCCCCCCceEEEEE-cCCcEEEEEeeecccccccceeeeeeecc-C--CcccCcceEEEEE---ecC
Q 008939 169 IHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSVSLRQQLQDVGKKLVGAHHYNK-D--GSVNNSRCTSVTW---VPG 241 (548)
Q Consensus 169 ~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iwdl~~~~~~~~~~~~~~~~~~~-~--~~~~~~~v~~l~~---~p~ 241 (548)
+....-.+-|.+|++. ...|++++ ..|.|..||.... ..... .+.. . +. ....+..|.| .|+
T Consensus 8 ~~~~~~yPE~~~wd~~---~g~~~vs~l~~g~V~~~~~~~~------~~~~~-~~~~~s~~g~-~~~~~sGl~~~~~D~~ 76 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRT---RQVFYQSNLYKGRIEVYNPKTQ------SHFNV-VIDGASSNGD-GEQQMSGLSLLTHDNS 76 (334)
T ss_dssp ECCTTCCCSCEEEETT---TTEEEEEETTTTEEEEECTTTC------CEEEE-CCTTTCCSSC-CSEEEEEEEESSSSSC
T ss_pred ecCcccCCcCccCcCC---CCEEEEEeccCCEEEEEcCCCC------eEEEE-ecCCccccCC-CcceeeEEEEeccCCC
Confidence 3445557788999886 44555555 7899999987631 11111 1110 0 10 1234589999 588
Q ss_pred CCcEEEEEe-------------CCCcEEEEEcC---CCCCCCCCcc--cccccceeeeecCCCCCCCCeeEeee-cCCCe
Q 008939 242 GDGAFVVGH-------------ADGNLYVYEKS---KDGAGDSSFP--VIKDQTQFSVAHPRYSKSNPIARWHI-CQGSI 302 (548)
Q Consensus 242 ~~~~l~s~~-------------~dg~v~vwd~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v 302 (548)
+. ++++.. .+..|..||+. +.. ...... ..... + +...+ --..+
T Consensus 77 gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~-~~~~~dL~~~~~~--~-------------~~~~g~~~~~~ 139 (334)
T 2p9w_A 77 KR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSK-PVWSVNFEKVQDE--F-------------EKKAGKRPFGV 139 (334)
T ss_dssp CE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCC-CSEEEESHHHHHH--H-------------HHHHSSCCEEE
T ss_pred Cc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCC-EEEEecCcccccc--c-------------cccccccccCC
Confidence 65 666544 25778899987 421 111110 00000 0 00000 00247
Q ss_pred EEEEECCCCCEEEEEECC-CeEEEEeCCCCeEEEeee-----ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc
Q 008939 303 NSIAFSTDGTYLATVGRD-GYLRVFDYSKEQLICGGK-----SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR 373 (548)
Q Consensus 303 ~~~~~sp~g~~l~s~~~d-g~v~vwd~~~~~~~~~~~-----~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~ 373 (548)
..++..++|+..++++.- +.|...+........... ......+.|+++|+|+.|++....+.|..+|+++.
T Consensus 140 nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 140 VQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred ceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 899999999988888877 887777776332221111 11223678999999999888877999999999853
No 305
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.34 E-value=0.13 Score=49.89 Aligned_cols=236 Identities=11% Similarity=0.132 Sum_probs=118.6
Q ss_pred CCceeEEeCCCCCEEEEec-CCeEEEEEccCCCCCCeEEEe----cCCCCceEEEecCCCCCCceEEEEE---cCCcEEE
Q 008939 131 TSMTNTNFDGKGTYIIFNV-GDAIFISDLNSQDKDPIKSIH----FSNSNPVCHAFDQDAKDGHDLLIGL---NSGDVYS 202 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~-~d~v~vwd~~~~~~~~i~~~~----~~~~~~~~~~~~p~~~~~~~l~~g~---~dg~I~i 202 (548)
..+..++|.|+|.++++.. ...|++++...+...++..+. .....+..++|+|+-.....|++.. .++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 3456899999999888876 458888876543322232221 1234678999999632233455543 3455666
Q ss_pred EEeeeccc---c--cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc-----------EEEEEcCCCCCC
Q 008939 203 VSLRQQLQ---D--VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN-----------LYVYEKSKDGAG 266 (548)
Q Consensus 203 wdl~~~~~---~--~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~-----------v~vwd~~~~~~~ 266 (548)
|.+..... . ..+.++.. .. ....| .-..|.|.|++. ++++.+..+. =+||.++.++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~--~p-~~~~H--~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRG--IP-KGVIH--NGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEE--EC-CCSSC--CCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred EEeCCCCcccccCCCcEEEEEc--CC-CCCCc--cCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 66543100 0 11111111 11 12223 346799999997 5555332111 122333322211
Q ss_pred CCCcccccccceeeeecCCCCCCCC---eeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCCCe----------
Q 008939 267 DSSFPVIKDQTQFSVAHPRYSKSNP---IARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSKEQ---------- 332 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~~~---------- 332 (548)
. ..+| ...|.........++|+|+|.+.++- +.|+.-.|--+..+.
T Consensus 186 p--------------------~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~ 245 (347)
T 3das_A 186 A--------------------PGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGK 245 (347)
T ss_dssp C--------------------TTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSS
T ss_pred c--------------------CCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCC
Confidence 0 0111 11232222456789999988765543 223322222222221
Q ss_pred --------EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCcee----EEeccCCCCCeEEEEEec
Q 008939 333 --------LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV----VAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 333 --------~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~----~~~~~~h~~~V~~v~~~p 393 (548)
.+..+..+......++|. +|..++..-....|....++.... ...+.+....+..|+..|
T Consensus 246 ~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p 317 (347)
T 3das_A 246 GGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG 317 (347)
T ss_dssp CCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE
T ss_pred CCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC
Confidence 111122121244566665 466666666666776667655432 234444456789999999
No 306
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.26 E-value=0.27 Score=51.99 Aligned_cols=244 Identities=9% Similarity=-0.037 Sum_probs=138.6
Q ss_pred CCEEEEecCCeEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCceEEEEE-cCCcEEEEEeeecccccccceeee
Q 008939 142 GTYIIFNVGDAIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSVSLRQQLQDVGKKLVGA 219 (548)
Q Consensus 142 g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iwdl~~~~~~~~~~~~~~ 219 (548)
..+++++....|+-..+..... +-..+.. .-..+..++|++. ...|+... ..+.|+.+++... ....++..
T Consensus 308 ~~~Ll~s~~~~i~~i~l~~~~~-~~~~l~~~~~~~~~~ld~d~~---~~~iy~sD~~~~~I~r~~~~g~---~~~~v~~~ 380 (628)
T 4a0p_A 308 TTFLLFSQKSAINRMVIDEQQS-PDIILPIHSLRNVRAIDYDPL---DKQLYWIDSRQNMIRKAQEDGS---QGFTVVVS 380 (628)
T ss_dssp SSEEEEEETTEEEEECCCTTCC-CCEECCCTTCSCEEEEEEETT---TTEEEEEETTTTEEEEEETTSC---SCEEEEC-
T ss_pred cceeeeeccceEEEEecccccC-ceEEEEehhcCCceEEEEecC---CCeEEEEecCcceEEEEEcCCC---CceEEEEc
Confidence 3466666666676666654221 1112222 2246788999887 33454444 4567887776531 00111110
Q ss_pred eeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC
Q 008939 220 HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ 299 (548)
Q Consensus 220 ~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 299 (548)
. ..+......+..|++...+.+++++-...+.|.+.+++. .... ..+....
T Consensus 381 ~---~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G--~~~~------------------------~l~~~~l 431 (628)
T 4a0p_A 381 S---VPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG--RSVG------------------------VVLKGEQ 431 (628)
T ss_dssp ----------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CEEE------------------------EEEECTT
T ss_pred c---cccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC--CeEE------------------------EEEeCCC
Confidence 0 000001346789999998876667777788899988763 1100 0111122
Q ss_pred CCeEEEEECC-CCCEEEEEECCC--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe-CCCeEEEEECCCcee
Q 008939 300 GSINSIAFST-DGTYLATVGRDG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSMEDRKV 375 (548)
Q Consensus 300 ~~v~~~~~sp-~g~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~~~~~~ 375 (548)
....++++.| .|.++.+-.... .|...++.-..........-...+.|++.++++.|..+. ..+.|...|++....
T Consensus 432 ~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r 511 (628)
T 4a0p_A 432 DRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR 511 (628)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCce
Confidence 5688999999 555444433232 566677753322222232345678999999877776654 468899999964433
Q ss_pred EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 376 VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 376 ~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
.......-....+|+.. ++ +++.+-.....|...|..+++....+.
T Consensus 512 ~~~~~~~~~~P~glav~--------~~------~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 512 IVLEDSNILQPVGLTVF--------EN------WLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp EEEECSSCSCEEEEEEE--------TT------EEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred EEEEcCCCCCcEEEEEE--------CC------EEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 22222333455677775 33 567777677888888888776555444
No 307
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.25 E-value=0.0019 Score=69.71 Aligned_cols=220 Identities=10% Similarity=-0.077 Sum_probs=120.4
Q ss_pred CCceeEEeCCCCCEEEEec-C-CeEEEEEccCCC--CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 131 TSMTNTNFDGKGTYIIFNV-G-DAIFISDLNSQD--KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~-~-d~v~vwd~~~~~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
..+..++|++.+..|.++. . +.|+.+++.... ......+......+..+++++.. +.++++-...+.|.++++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~--g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH--SNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS--SBCEECCTTTSCEEEEBSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC--CcEEEEeccCCeEEEEecC
Confidence 3456789998777777753 2 389999987511 01111111122356778888652 3444444556789888876
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
.. ....... ........|++.|.+..++++-... +.|++++++. .....+.
T Consensus 484 g~------~~~~l~~------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG--~~~~~l~-------------- 535 (699)
T 1n7d_A 484 GV------KRKTLFR------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSLV-------------- 535 (699)
T ss_dssp SC------CEEEECC------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS--CCCCEES--------------
T ss_pred CC------ceEEEEe------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC--CCeeEEE--------------
Confidence 41 1111100 0123457888998766344433222 6677666542 1111100
Q ss_pred CCCCCCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCCCeEEEeee--ecCCceEEEEEccCCCEEEEEeCC
Q 008939 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
...-...+.|+|+|++..|+.+ ...+.|.++++........+. ........|++..+ .++++....
T Consensus 536 ----------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~ 604 (699)
T 1n7d_A 536 ----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIIN 604 (699)
T ss_dssp ----------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTT
T ss_pred ----------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCC
Confidence 0001345689999976555554 456789999996433222221 11223345566544 455566667
Q ss_pred CeEEEEECCCceeEEeccCCCCCeEEEEE
Q 008939 363 DLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391 (548)
Q Consensus 363 g~I~vwd~~~~~~~~~~~~h~~~V~~v~~ 391 (548)
+.|..+|..+++.+..+.........|++
T Consensus 605 ~~V~~~d~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 605 EAIFSANRLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp TCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred CeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence 89999999888887777543333444543
No 308
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.24 E-value=0.018 Score=55.00 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=59.5
Q ss_pred CCCEEEEEEC---------CCeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCc
Q 008939 310 DGTYLATVGR---------DGYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDR 373 (548)
Q Consensus 310 ~g~~l~s~~~---------dg~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~ 373 (548)
++++++.|+. -..+.+||+.+.+-... +....... +++.. ++++++.|+.+ ..+.+||+.+.
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNH-GLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcc-eEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 5566666653 34588999987754322 11111111 22222 66777777653 46899999876
Q ss_pred eeE--EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCCeEE
Q 008939 374 KVV--AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDEIV 431 (548)
Q Consensus 374 ~~~--~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~~~~ 431 (548)
+-. ..+.........+.+ ++ .+++.++.+ ..+.+||+.+.+-.
T Consensus 227 ~W~~~~~~p~~r~~~~~~~~---------~~------~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 227 EWKMVSPMPWKGVTVKCAAV---------GS------IVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EEEECCCCSCCBSCCEEEEE---------TT------EEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred cEEECCCCCCCccceeEEEE---------CC------EEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 532 222222223334444 44 678888754 56888999887644
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.22 E-value=0.16 Score=49.50 Aligned_cols=167 Identities=13% Similarity=0.136 Sum_probs=90.3
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccC-CcccCcceEEEEEecC--CC-cEEEEEeC--CCcEEEEEcCCCCCCCCC
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKD-GSVNNSRCTSVTWVPG--GD-GAFVVGHA--DGNLYVYEKSKDGAGDSS 269 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~p~--~~-~~l~s~~~--dg~v~vwd~~~~~~~~~~ 269 (548)
.+|.|.++|+.+.... .+++ ..... .....-....|.+.++ +. .++++-+. +..|.+|+++.++.....
T Consensus 81 ~~G~I~~~d~~~~~~~-~~~l----~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~ 155 (355)
T 3sre_A 81 KSGKILLMDLNEKEPA-VSEL----EIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLH 155 (355)
T ss_dssp -CCEEEEEETTSSSCC-EEEC----EEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEE
T ss_pred CCCeEEEEecCCCCCc-eEEE----EccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEE
Confidence 6899999998742111 0111 11100 0112345667777663 43 24555444 568889888754321111
Q ss_pred cccccccceeeeecCCCCCCCCeeEeeec-CCCeEEEEECCCCCEEEEEEC-----------------CCeEEEEeCCCC
Q 008939 270 FPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGSINSIAFSTDGTYLATVGR-----------------DGYLRVFDYSKE 331 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~~~-----------------dg~v~vwd~~~~ 331 (548)
+..+... -...+.+.+.++|.+.++... .|.|..+|. +
T Consensus 156 ----------------------~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~ 211 (355)
T 3sre_A 156 ----------------------LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N 211 (355)
T ss_dssp ----------------------EEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--T
T ss_pred ----------------------EeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--C
Confidence 1111111 146789999999987776531 244555554 3
Q ss_pred eEEEeeeecCCceEEEEEccCCCEEEEEe-CCCeEEEEECCC-cee--EEeccCCCCCeEEEEEec
Q 008939 332 QLICGGKSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSMED-RKV--VAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 332 ~~~~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~~~-~~~--~~~~~~h~~~V~~v~~~p 393 (548)
+... +...-...+.++|+||++.|+++. ..+.|..|+++. ++. ...+. .....-.+++++
T Consensus 212 ~~~~-~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~ 275 (355)
T 3sre_A 212 DVRV-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDP 275 (355)
T ss_dssp CCEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECT
T ss_pred eEEE-eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeC
Confidence 3222 222234578899999998777665 578999999863 322 12221 234456667765
No 310
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.18 E-value=0.33 Score=51.33 Aligned_cols=232 Identities=9% Similarity=-0.017 Sum_probs=132.2
Q ss_pred CCEEEEecCCeEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCceEEEE-EcCCcEEEEEeeecccccccceeee
Q 008939 142 GTYIIFNVGDAIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIG-LNSGDVYSVSLRQQLQDVGKKLVGA 219 (548)
Q Consensus 142 g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g-~~dg~I~iwdl~~~~~~~~~~~~~~ 219 (548)
..+|+++....|+..++.......+ .+.. .-..+..++|++. ...|+.. ...+.|+.+++.... ...+..
T Consensus 317 ~~~Ll~~~~~~i~~i~l~~~~~~~~-~~~~~~l~~~~~ld~d~~---~~~ly~sD~~~~~I~r~~~~g~~---~~~v~~- 388 (619)
T 3s94_A 317 TELLLLARRTDLRRISLDTPDFTDI-VLQLEDIRHAIAIDYDPV---EGYIYWTDDEVRAIRRSFIDGSG---SQFVVT- 388 (619)
T ss_dssp SEEEEEEESSCEEEEESSSTTCCCE-ECCCSCCSSEEEEEEETT---TTEEEEEETTTTEEEEEETTSCS---CEEEEC-
T ss_pred ceEEEEEcccceEEEecCCCcccee-EEeccccCccEEEEEEcC---CCeEEEEeCCCCeEEEEEcCCCc---cEEEEE-
Confidence 3466676666788888876442222 1222 2246788999986 3345544 456788888876410 011110
Q ss_pred eeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC
Q 008939 220 HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ 299 (548)
Q Consensus 220 ~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 299 (548)
. .......|++...+.+++++-...+.|.+.+++.. ....+ ....-
T Consensus 389 -----~---~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~--~~~~l------------------------~~~~l 434 (619)
T 3s94_A 389 -----A---QIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT--MRKIL------------------------ISEDL 434 (619)
T ss_dssp -----S---SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEE------------------------ECTTC
T ss_pred -----C---CCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC--eEEEE------------------------EECCC
Confidence 0 12456789998766646666667788999888641 11000 00112
Q ss_pred CCeEEEEECCCCCEEEEEEC--CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe-CCCeEEEEECCCceeE
Q 008939 300 GSINSIAFSTDGTYLATVGR--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSMEDRKVV 376 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~~~~~~~ 376 (548)
....++++.|...+|+.... ...|...++.-................|++++++..|..+. ..+.|..++++.....
T Consensus 435 ~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~ 514 (619)
T 3s94_A 435 EEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRR 514 (619)
T ss_dssp CSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE
T ss_pred CCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceE
Confidence 56789999996445555542 35677777753222222233345678999998776666654 4578999998644322
Q ss_pred EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 377 AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 377 ~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
..+...-....+|+.. ++ +++.+-...+.|...|..++.
T Consensus 515 ~~~~~~l~~P~glav~--------~~------~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 515 VLVEDKIPHIFGFTLL--------GD------YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEECCCCSSCCEEEE--------TT------EEEEECTTSSCEEEEESSSCC
T ss_pred EEeccCCCCcEEEEEE--------CC------EEEEeecCCCeEEEEEcCCCc
Confidence 2222222222345554 22 455555566677777777663
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.08 E-value=0.022 Score=54.20 Aligned_cols=105 Identities=13% Similarity=0.118 Sum_probs=58.4
Q ss_pred CCCEEEEEECC-------CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCcee
Q 008939 310 DGTYLATVGRD-------GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRKV 375 (548)
Q Consensus 310 ~g~~l~s~~~d-------g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~~ 375 (548)
++++++.|+.+ ..+.+||+.+.+-... +....... +++. -++++++.|+.+ ..+.+||+++.+-
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 232 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence 55666666532 3588999987754322 21111111 2222 267777887764 3689999987653
Q ss_pred EE--eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC-----eEEEEECCCCeEE
Q 008939 376 VA--WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT-----RLLLWDLEMDEIV 431 (548)
Q Consensus 376 ~~--~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg-----~i~lwd~~~~~~~ 431 (548)
.. .+......-..+.+ ++ .+++.|+.++ .+.+||+.+.+-.
T Consensus 233 ~~~~~~~~~r~~~~~~~~---------~~------~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 233 RQVADMNMCRRNAGVCAV---------NG------LLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EEECCCSSCCBSCEEEEE---------TT------EEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred eeCCCCCCccccCeEEEE---------CC------EEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 32 22211122223333 55 6777777653 4888888877643
No 312
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.95 E-value=0.14 Score=48.91 Aligned_cols=107 Identities=18% Similarity=0.116 Sum_probs=60.3
Q ss_pred CCCEEEEEEC-C-----CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCCC-----eEEEEECCCceeE
Q 008939 310 DGTYLATVGR-D-----GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGEDD-----LVQVWSMEDRKVV 376 (548)
Q Consensus 310 ~g~~l~s~~~-d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~dg-----~I~vwd~~~~~~~ 376 (548)
++++++.|+. + ..+.+||+.+.+-... +........++. -++++++.|+.++ .+.+||+++.+-.
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 5566777765 2 4689999987753322 111111112222 2677888887654 5888999876533
Q ss_pred E--eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC--------------CeEEEEECCCCeEEee
Q 008939 377 A--WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD--------------TRLLLWDLEMDEIVVP 433 (548)
Q Consensus 377 ~--~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D--------------g~i~lwd~~~~~~~~~ 433 (548)
. .+.........+.+ ++ ++++.|+.+ ..|.+||+.+.+-...
T Consensus 226 ~~~~~p~~r~~~~~~~~---------~~------~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 226 PFEAFPQERSSLSLVSL---------VG------TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EECCCSSCCBSCEEEEE---------TT------EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred ECCCCCCcccceeEEEE---------CC------EEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 2 22222222233333 45 577777764 2477889988765544
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.87 E-value=0.38 Score=46.85 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=35.8
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG 241 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~ 241 (548)
-..+..++|.|+ ++.|+++...|.|++++...... ..+.. ..............|+|+|+
T Consensus 17 l~~P~~i~~~pd---G~~l~V~e~~G~i~~~~~~g~~~---~~~~~---~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 17 LDHPWALAFLPD---NHGMLITLRGGELRHWQAGKGLS---APLSG---VPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp ESSEEEEEECST---TCCEEEEETTTEEEEEETTTEEC---CCCBS---CCCCCCSTTCSEEEEEECTT
T ss_pred CCCcEEEEEcCC---CCEEEEEeCCceEEEEeCCCcee---eEecC---CcccccCCCCCceeEEECCC
Confidence 347899999998 66467777889999987432110 00100 00000012345689999996
No 314
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.81 E-value=0.11 Score=49.55 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=60.2
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCceeEE
Q 008939 310 DGTYLATVGRD-----GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRKVVA 377 (548)
Q Consensus 310 ~g~~l~s~~~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~~~~ 377 (548)
++++++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+.+ ..+.+||+++.+-..
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 56677777654 4588999987754322 1111111222222 67777777764 569999998865332
Q ss_pred --eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCCeEEe
Q 008939 378 --WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDEIVV 432 (548)
Q Consensus 378 --~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~~~~~ 432 (548)
.+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-..
T Consensus 246 ~~~~p~~r~~~~~~~~---------~~------~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 246 VAPMKHRRSALGITVH---------QG------RIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp CCCCSSCCBSCEEEEE---------TT------EEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred CCCCCCCccceEEEEE---------CC------EEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 22212222233333 55 577777754 457889988876543
No 315
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.68 E-value=0.65 Score=46.93 Aligned_cols=112 Identities=8% Similarity=0.055 Sum_probs=62.7
Q ss_pred CceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEec------CCCCceEEEecCCCCCCceEEEEEc--------
Q 008939 132 SMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHF------SNSNPVCHAFDQDAKDGHDLLIGLN-------- 196 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~------~~~~~~~~~~~p~~~~~~~l~~g~~-------- 196 (548)
.+..++|.|+|+++++.... .|++++...+....+..+.- ....+..++|+|+-..+..|++...
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 45689999999988887664 68888765433222222211 1245668999997544455665553
Q ss_pred -----CCcEEEEEeeeccccc--ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEE
Q 008939 197 -----SGDVYSVSLRQQLQDV--GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVG 249 (548)
Q Consensus 197 -----dg~I~iwdl~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 249 (548)
...|.-|++....... .+.++.. + +....| ....|+|.|++. ++++.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~--~-p~~~~H--~~~~l~f~pDG~-Lyv~~ 161 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAG--L-PSSKDH--QSGRLVIGPDQK-IYYTI 161 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEE--E-CCCSSC--CEEEEEECTTSC-EEEEE
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEc--C-CCCCCC--CCCeEeECCCCe-EEEEE
Confidence 2356666654311000 1111111 1 111123 468999999998 55543
No 316
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.63 E-value=0.56 Score=45.60 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=48.0
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC---C
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG---G 242 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~---~ 242 (548)
+..+.-.-..+..++|.|+ +. |+++...|.|++++ ... ...+.... ...........|+|+|+ +
T Consensus 23 ~~~va~~l~~P~~ia~~pd---G~-l~V~e~~g~I~~i~-~g~-----~~~~~~~~---v~~~g~~~p~gia~~pdf~~~ 89 (352)
T 2ism_A 23 VEEVVGGLEVPWALAFLPD---GG-MLIAERPGRIRLFR-EGR-----LSTYAELS---VYHRGESGLLGLALHPRFPQE 89 (352)
T ss_dssp EEEEECCCSCEEEEEECTT---SC-EEEEETTTEEEEEE-TTE-----EEEEEECC---CCCSTTCSEEEEEECTTTTTS
T ss_pred EEEEECCCCCceEEEEcCC---Ce-EEEEeCCCeEEEEE-CCC-----ccEeecce---EeecCCCCceeEEECCCCCCC
Confidence 3333333457899999998 55 67777889999998 221 11111110 00012456789999998 5
Q ss_pred CcEEEEEeC-C-----CcEEEEEcC
Q 008939 243 DGAFVVGHA-D-----GNLYVYEKS 261 (548)
Q Consensus 243 ~~~l~s~~~-d-----g~v~vwd~~ 261 (548)
. .|+++.. + +.|..|+..
T Consensus 90 g-~lYv~~~~~~~~~~~~v~r~~~~ 113 (352)
T 2ism_A 90 P-YVYAYRTVAEGGLRNQVVRLRHL 113 (352)
T ss_dssp C-EEEEEEEECTTSSEEEEEEEEEC
T ss_pred C-EEEEEEecCCCCCccEEEEEEeC
Confidence 5 4444433 2 567777765
No 317
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.61 E-value=0.28 Score=48.35 Aligned_cols=167 Identities=16% Similarity=0.194 Sum_probs=101.9
Q ss_pred eCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecC----CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccc
Q 008939 138 FDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFS----NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVG 213 (548)
Q Consensus 138 ~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~----~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~ 213 (548)
...+|..+++..++.||.-++.... .-+.+... -..+..+..+|+ |.+|++.+ +.+|.|..+........
T Consensus 28 ~~~n~t~i~~a~~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSps---G~lLAl~g-~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 28 SSQNGTRIVFIQDNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISSTS---GDLLCLFN-DNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp EETTTTEEEEEETTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECTT---SSEEEEEC-SSEEEEEECCTTCSCCC
T ss_pred EEcCCCEEEEEECCEEEEEECCCCC--cceEEecCcccccCceeEEEECCC---CCEEEEec-CCeEEEEEecCccccCc
Confidence 3457788888888999999988543 44455443 236788999998 77777764 45899998873211110
Q ss_pred -----ccee-eeeeeccCCcccCcceEEEEEecCCCc--EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 214 -----KKLV-GAHHYNKDGSVNNSRCTSVTWVPGGDG--AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 214 -----~~~~-~~~~~~~~~~~~~~~v~~l~~~p~~~~--~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
.++. ......+.......+|..+.|+|-+.+ .|++-..|+.|++||+..... ... ....
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~--~L~k---------- 168 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPI--VLNK---------- 168 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCE--EESC----------
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCc--chhc----------
Confidence 1111 111111111113678999999997654 799999999999999986211 111 0100
Q ss_pred CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE--CCCeEEEE
Q 008939 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATVG--RDGYLRVF 326 (548)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~--~dg~v~vw 326 (548)
.............|.+++|..++-.|.... ..|.|.-.
T Consensus 169 ---~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 169 ---PNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ---CCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ---cccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 011111222336788999999876666644 67777644
No 318
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.59 E-value=0.61 Score=45.42 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=45.4
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC---CCcEEEEE
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG---GDGAFVVG 249 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~---~~~~l~s~ 249 (548)
-..+..++|.|+ +. |+++..+|.|+++|... +..+..... ..........|+|+|+ +. .|+++
T Consensus 28 l~~P~~ia~~pd---G~-l~V~e~~g~I~~~d~~G------~~~~~~~~v---~~~g~~g~~gia~~pdf~~~g-~lyv~ 93 (354)
T 3a9g_A 28 LEVPWSIAPLGG---GR-YLVTERPGRLVLISPSG------KKLVASFDV---ANVGEAGLLGLALHPEFPKKS-WVYLY 93 (354)
T ss_dssp CSCEEEEEEEET---TE-EEEEETTTEEEEECSSC------EEEEEECCC---CCSTTCSEEEEEECTTTTTSC-EEEEE
T ss_pred CCCCeEEEEcCC---Ce-EEEEeCCCEEEEEeCCC------ceEeeccce---eecCCCceeeEEeCCCCCcCC-EEEEE
Confidence 357889999998 54 77777889999886321 111111110 0012356789999998 44 44444
Q ss_pred eC----C----CcEEEEEcCC
Q 008939 250 HA----D----GNLYVYEKSK 262 (548)
Q Consensus 250 ~~----d----g~v~vwd~~~ 262 (548)
.. + ..|..|+...
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~ 114 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDG 114 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECS
T ss_pred EeccCCCCCcceEEEEEEECC
Confidence 33 3 5677777653
No 319
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.57 E-value=0.1 Score=59.24 Aligned_cols=241 Identities=10% Similarity=0.117 Sum_probs=140.9
Q ss_pred EeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccce
Q 008939 137 NFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKL 216 (548)
Q Consensus 137 ~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~ 216 (548)
-.+|..++|+.-.+.+++|+|+++ +..+.+..+. ..|..-.|-.. . .|+. -.+..|+-|++... ..+ .
T Consensus 72 IMnP~~~iiALrag~~lQiFnl~~--k~klks~~~~-e~VvfWkWis~---~-~l~l-VT~~aVyHW~~~~~-s~P-~-- 139 (1630)
T 1xi4_A 72 IMNPASKVIALKAGKTLQIFNIEM--KSKMKAHTMT-DDVTFWKWISL---N-TVAL-VTDNAVYHWSMEGE-SQP-V-- 139 (1630)
T ss_pred ccCCCcceEEEecCCeEEEeehHH--hhhhcccccC-CCceEEEecCC---C-eeEE-EcCCeEEEeccCCC-Ccc-H--
Confidence 446778888888888999999998 5578777764 46777677544 1 2332 33458999999641 111 1
Q ss_pred eeeeeeccCCcccCcceEEEEEecCCCcEEEEEe------CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCC
Q 008939 217 VGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH------ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSN 290 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (548)
..|.+........|....-+++.++++++|- -.|.+.+|..+..
T Consensus 140 ---k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~--------------------------- 189 (1630)
T 1xi4_A 140 ---KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--------------------------- 189 (1630)
T ss_pred ---HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc---------------------------
Confidence 1133333334677888888888886666654 3478888888752
Q ss_pred CeeEeeecCCCeEEEEECC---CCCEEEEEEC---CCeEEEEeCCCC---eEEE------e-eee--cCCceEEEEEccC
Q 008939 291 PIARWHICQGSINSIAFST---DGTYLATVGR---DGYLRVFDYSKE---QLIC------G-GKS--YYGALLCCAWSMD 352 (548)
Q Consensus 291 ~~~~~~~h~~~v~~~~~sp---~g~~l~s~~~---dg~v~vwd~~~~---~~~~------~-~~~--~~~~v~~l~~spd 352 (548)
..+.+.+|.+....+.... ..++++.+.. .+.++|.++... .... . +.. -.+-..++..++.
T Consensus 190 ~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k 269 (1630)
T 1xi4_A 190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK 269 (1630)
T ss_pred cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc
Confidence 1222233333332222211 1122222221 267888888532 1100 0 110 1122345666776
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEe
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV 432 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~ 432 (548)
-..+..-+.-|.|++||++++.++..-+-....|...+.+. ...| ++.....|.|.--.+.....+.
T Consensus 270 ~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~-----~~~g--------~~~vnr~G~vl~v~v~~~~iv~ 336 (1630)
T 1xi4_A 270 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-----ATAG--------IIGVNRKGQVLSVCVEEENIIP 336 (1630)
T ss_pred cCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCC-----CCCc--------eEEEcCCceEEEEEEccchhhh
Confidence 66788888899999999999988766554455555444432 1123 5555577777777766665544
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.56 E-value=0.62 Score=45.29 Aligned_cols=242 Identities=13% Similarity=0.060 Sum_probs=116.5
Q ss_pred CceeEEeCCCCC-EEEEecCCeEEEEEccCCCCCCeEEE---e-cCCCCceEEEecCCCCCCceEEEEEc--------CC
Q 008939 132 SMTNTNFDGKGT-YIIFNVGDAIFISDLNSQDKDPIKSI---H-FSNSNPVCHAFDQDAKDGHDLLIGLN--------SG 198 (548)
Q Consensus 132 ~v~~~~~~~~g~-~l~~~~~d~v~vwd~~~~~~~~i~~~---~-~~~~~~~~~~~~p~~~~~~~l~~g~~--------dg 198 (548)
.+..++|.|+|+ ++++.....|++++.......++..+ . .....+..++|+|+-.++..|++... ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 456899999999 77776666888888543211122211 1 12345688999985211223444432 23
Q ss_pred cEEEEEeeeccc--ccccceeeeeeecc-CCcccCcceEEEEEecCCCcEEEEEeCC-------------CcEEEEEcCC
Q 008939 199 DVYSVSLRQQLQ--DVGKKLVGAHHYNK-DGSVNNSRCTSVTWVPGGDGAFVVGHAD-------------GNLYVYEKSK 262 (548)
Q Consensus 199 ~I~iwdl~~~~~--~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~l~s~~~d-------------g~v~vwd~~~ 262 (548)
.|..|++..... ...+.+... +.. ....| ....|+|.|++. ++++-+.. |.|.-++.+
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~--~p~~~~~~h--~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d- 172 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQ--MPKLSTGNH--FGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQ- 172 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEEC--SSCCBSSSC--CCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETT-
T ss_pred EEEEEEECCCCCCCCceEEEEEE--CCCCCCCcc--cCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCC-
Confidence 566666643100 000111110 110 01112 235799999996 44443221 345544443
Q ss_pred CCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEE-CCCeEEEEeCCCCe--------
Q 008939 263 DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVG-RDGYLRVFDYSKEQ-------- 332 (548)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~-~dg~v~vwd~~~~~-------- 332 (548)
+......+.... .......|..--.....++|+| +++++++-. .++.=.|.-+..+.
T Consensus 173 -G~~p~~npf~~~------------~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~ 239 (353)
T 2g8s_A 173 -GEIPDDNPFIKE------------SGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLAT 239 (353)
T ss_dssp -SCCCTTCTTTTS------------TTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBC
T ss_pred -CCCCCCCCCcCC------------CCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCcc
Confidence 221110000000 0001122222224578899999 565444322 11111222221111
Q ss_pred -----------------------EEEeeeecCCceEEEEEcc-------CCCEEEEEeCCCeEEEEECCCceeEEe---c
Q 008939 333 -----------------------LICGGKSYYGALLCCAWSM-------DGKYILTGGEDDLVQVWSMEDRKVVAW---G 379 (548)
Q Consensus 333 -----------------------~~~~~~~~~~~v~~l~~sp-------dg~~l~sgs~dg~I~vwd~~~~~~~~~---~ 379 (548)
.+..+. +......++|.. +|.++++.-..+.|...+++.++.+.. +
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~ 318 (353)
T 2g8s_A 240 WGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL 318 (353)
T ss_dssp SSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES
T ss_pred CCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc
Confidence 111122 223466777753 567777776778888888876544322 2
Q ss_pred cCCCCCeEEEEEec
Q 008939 380 EGHNSWVSGVAFDS 393 (548)
Q Consensus 380 ~~h~~~V~~v~~~p 393 (548)
......+..|++.|
T Consensus 319 ~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 319 TDRGQRIRDVRTGP 332 (353)
T ss_dssp GGGCCCEEEEEECT
T ss_pred cCCCCceeEEEECC
Confidence 22235788999999
No 321
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.53 E-value=0.54 Score=44.25 Aligned_cols=105 Identities=12% Similarity=0.053 Sum_probs=58.6
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCceeEE
Q 008939 310 DGTYLATVGRD-----GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRKVVA 377 (548)
Q Consensus 310 ~g~~l~s~~~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~~~~ 377 (548)
++++++.|+.+ ..+.+||+.+.+-... +........++. .++++++.|+.+ ..+.+||+.+.+-..
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 56667776643 3688999887754322 221111112222 267777777754 468899998765332
Q ss_pred --eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCCeEE
Q 008939 378 --WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDEIV 431 (548)
Q Consensus 378 --~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~~~~ 431 (548)
.+.........+.+ ++ ++++.|+.+ ..+.+||+.+.+-.
T Consensus 190 ~~~~p~~r~~~~~~~~---------~~------~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 190 VTPMATKRSGAGVALL---------ND------HIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp ECCCSSCCBSCEEEEE---------TT------EEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCCCCcccccceEEEE---------CC------EEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 22212222233333 44 577777764 45788888776543
No 322
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.51 E-value=1.7 Score=49.48 Aligned_cols=172 Identities=11% Similarity=0.093 Sum_probs=99.0
Q ss_pred eEEEEeCCCCeEEEeeeec-CCceEEEE---EccC-CCEEEEEe----------CCCeEEEEECCCceeEEecc-CCCCC
Q 008939 322 YLRVFDYSKEQLICGGKSY-YGALLCCA---WSMD-GKYILTGG----------EDDLVQVWSMEDRKVVAWGE-GHNSW 385 (548)
Q Consensus 322 ~v~vwd~~~~~~~~~~~~~-~~~v~~l~---~spd-g~~l~sgs----------~dg~I~vwd~~~~~~~~~~~-~h~~~ 385 (548)
.|++.|..+.+.+..+.-. ...+.|++ |..+ ..+|++|. ..|.|.+|++..++.....+ ..+++
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 3667777666665544322 22345554 3322 46888886 34789999997554322211 24678
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEe-eeecCCCCCCceecCCCCccccCCeeeecccC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV-PLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQ 464 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~ 464 (548)
|++|+-- +| +++++. ...|++||+...+.++ ....-..+..... ......+.+|...
T Consensus 888 v~al~~~--------~g------~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l------~~~~~~I~vgD~~ 945 (1158)
T 3ei3_A 888 VYSMVEF--------NG------KLLASI--NSTVRLYEWTTEKELRTECNHYNNIMALYL------KTKGDFILVGDLM 945 (1158)
T ss_dssp EEEEEEE--------TT------EEEEEE--TTEEEEEEECTTSCEEEEEEECCCSCEEEE------EEETTEEEEEESS
T ss_pred CEEEeee--------CC------EEEEEc--CCEEEEEECCCCceEEEEeeccccEEEEEE------eccCCEEEEEEhh
Confidence 9988743 66 555544 4789999998765443 1111011111011 1123566777777
Q ss_pred CCCceeecCCCC-ceEEee--cCCCCeeEEEEe-CCeEEEEECCCeEEEEeCCCC
Q 008939 465 PAPSMRDVPKLS-PLVAHR--VHTEPLSGLIFT-QESVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 465 ~~~~~~d~~~~~-~~~~~~--~h~~~V~~l~fs-pd~l~t~s~Dg~I~iW~~~~~ 515 (548)
..+.+...+... .+..+. -+...++++.|- .+.++.+..+|.|.+...+..
T Consensus 946 ~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 946 RSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp BCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTT
T ss_pred heEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCC
Confidence 776665433221 222222 234567888875 457888999999999987653
No 323
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.43 E-value=0.32 Score=46.36 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=57.5
Q ss_pred CCCEEEEEEC------CCeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCceeE
Q 008939 310 DGTYLATVGR------DGYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRKVV 376 (548)
Q Consensus 310 ~g~~l~s~~~------dg~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~~~ 376 (548)
++++++.|+. -..+.+||+.+.+-... +....... +++. -++++++.|+.+ ..+.+||+++.+-.
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 5666666653 23589999987753322 11111111 2222 266777777653 35778998876432
Q ss_pred --EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC--------------CeEEEEECCCCeEEe
Q 008939 377 --AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD--------------TRLLLWDLEMDEIVV 432 (548)
Q Consensus 377 --~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D--------------g~i~lwd~~~~~~~~ 432 (548)
..+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-..
T Consensus 236 ~~~~~p~~r~~~~~~~~---------~~------~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 236 VMTEFPQERSSISLVSL---------AG------SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp ECCCCSSCCBSCEEEEE---------TT------EEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred ECCCCCCcccceEEEEE---------CC------EEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 222222222233333 45 577777654 357788887766543
No 324
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.36 E-value=0.73 Score=43.77 Aligned_cols=231 Identities=10% Similarity=0.126 Sum_probs=135.1
Q ss_pred CCCEEEEe--cCC--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccce
Q 008939 141 KGTYIIFN--VGD--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKL 216 (548)
Q Consensus 141 ~g~~l~~~--~~d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~ 216 (548)
..++++.- .++ .|.|-|+..+. .+..... ..-....+|. ...|+.-. ...++++|+++. .++
T Consensus 35 SDkyicVrE~~~~~~~VvIiDl~n~~--~~~Rrpi---~AdsAIMnP~---~~ViALra-g~~LQiFnletK-----~kl 100 (365)
T 2xzh_A 35 SDKFICIREKVGEQAQVVIIDMNDPS--NPIRRPI---SADSAIMNPA---SKVIALKA-GKTLQIFNIEMK-----SKM 100 (365)
T ss_dssp ETTEEEEEEEETTEEEEEEEETTSTT--SCEEEEC---CCSEEEECSS---SSEEEEEE-TTEEEEEETTTT-----EEE
T ss_pred cCceEEEEecCCCCCEEEEEECCCCC--Ccccccc---ccceeeeCCC---ccEEEEec-CCeEEEechHHh-----hhh
Confidence 35677762 222 89999999865 3333222 2234445776 44555554 678999999872 233
Q ss_pred eeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee
Q 008939 217 VGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH 296 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (548)
.... ....|.-=+|-.+.. |+... +..|+-|++..+ ..|++.++
T Consensus 101 ks~~--------~~e~VvfWkWis~~~--L~lVT-~taVyHWs~~~~-------------------------s~P~kvFd 144 (365)
T 2xzh_A 101 KAHT--------MTDDVTFWKWISLNT--VALVT-DNAVYHWSMEGE-------------------------SQPVKMFD 144 (365)
T ss_dssp EEEE--------CSSCEEEEEECSSSE--EEEEE-SSEEEEEESSTT-------------------------CCCEEEEE
T ss_pred ccee--------cCCccEEEEecCCCe--EEEEc-CCcEEEEcccCC-------------------------CCCceeee
Confidence 3222 256777788877664 44333 357999998752 23444444
Q ss_pred ec----CCCeEEEEECCCCCEEEEEEC-------CCeEEEEeCCCCeEEEeeeecCCceEEEEEccC---CCEEEEEeC-
Q 008939 297 IC----QGSINSIAFSTDGTYLATVGR-------DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD---GKYILTGGE- 361 (548)
Q Consensus 297 ~h----~~~v~~~~~sp~g~~l~s~~~-------dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd---g~~l~sgs~- 361 (548)
.| ...|.....+++.++++..+- .|.+.+|..+.+. -+.+.+|.+....+.+.-+ .++++.+..
T Consensus 145 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 145 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred cchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEec
Confidence 44 356777778888887765542 3778899987553 4456777554433322211 123333332
Q ss_pred --CCeEEEEECCCc---e------eEEeccC---CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 362 --DDLVQVWSMEDR---K------VVAWGEG---HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 362 --dg~I~vwd~~~~---~------~~~~~~~---h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
.+.++|-++... . .+..+.. ..+--.++..++. .| .+.....-|.|.+||+.+
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~k------yg-------viyviTK~G~ihlyDleT 290 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK------HD-------VVFLITKYGYIHLYDLET 290 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETT------TT-------EEEEEETTSEEEEEETTT
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEeccc------CC-------EEEEEeCCcEEEEEEccc
Confidence 257888887432 1 1111111 2334445666541 33 566677889999999999
Q ss_pred CeEEeeee
Q 008939 428 DEIVVPLR 435 (548)
Q Consensus 428 ~~~~~~~~ 435 (548)
+.++..-+
T Consensus 291 gt~i~~nr 298 (365)
T 2xzh_A 291 GTCIYMNR 298 (365)
T ss_dssp CCEEEEEE
T ss_pred CcEEEEec
Confidence 99886544
No 325
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.29 E-value=0.17 Score=49.32 Aligned_cols=111 Identities=11% Similarity=0.028 Sum_probs=54.5
Q ss_pred CCCEEEEEEC------CCeEEEEeC--CCCeEEE--eeeecCCceEEEEEccCCCEEEEEeCC-----------------
Q 008939 310 DGTYLATVGR------DGYLRVFDY--SKEQLIC--GGKSYYGALLCCAWSMDGKYILTGGED----------------- 362 (548)
Q Consensus 310 ~g~~l~s~~~------dg~v~vwd~--~~~~~~~--~~~~~~~~v~~l~~spdg~~l~sgs~d----------------- 362 (548)
++++++.|+. ...+.+||+ .+.+-.. .+..........+...++++++.|+.+
T Consensus 200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~ 279 (357)
T 2uvk_A 200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279 (357)
T ss_dssp TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence 4556666553 345777877 4433221 121111111112233466777777632
Q ss_pred -----CeEEEEECCCce--eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC------eEEEEECCCCe
Q 008939 363 -----DLVQVWSMEDRK--VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT------RLLLWDLEMDE 429 (548)
Q Consensus 363 -----g~I~vwd~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg------~i~lwd~~~~~ 429 (548)
..+.+||+++.+ .+..+......-.++.+ ++ ++++.||.++ .|.++++++++
T Consensus 280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---------~~------~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 280 GLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW---------NN------SLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp TCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE---------TT------EEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred cccceeeEEEEecCCCceeeCCCCCCCcccceeEEe---------CC------EEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 257889988754 34444333333334444 55 6788888653 35566888877
Q ss_pred EEeeee
Q 008939 430 IVVPLR 435 (548)
Q Consensus 430 ~~~~~~ 435 (548)
.+....
T Consensus 345 ~~~~~~ 350 (357)
T 2uvk_A 345 VTVQNL 350 (357)
T ss_dssp CEEEC-
T ss_pred eEeeec
Confidence 665443
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.24 E-value=0.075 Score=52.42 Aligned_cols=124 Identities=9% Similarity=0.129 Sum_probs=84.4
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCC--------CCeE--EEecC------CCCceEEEecCCCCCCceEEEEE
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDK--------DPIK--SIHFS------NSNPVCHAFDQDAKDGHDLLIGL 195 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~--------~~i~--~~~~~------~~~~~~~~~~p~~~~~~~l~~g~ 195 (548)
.+..+..+|+|+++|..+...|.|-.+..+.. .++. ..... ...|..+.|+|-+..+..|++=.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 46679999999999999989999999984321 1122 33332 45799999999988888999999
Q ss_pred cCCcEEEEEeeeccccccccee-eeeeeccCCcccCcceEEEEEecCCCcEEEE--EeCCCcEEEEE
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLV-GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV--GHADGNLYVYE 259 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s--~~~dg~v~vwd 259 (548)
.|+.|++||+......+. .+. ....|..+. ....|.+++|.+++- -|.+ ....|.|+-.-
T Consensus 147 sD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~--~~~ev~S~~Fg~~~l-TLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPI-VLNKPNNSFGLDA--RVNDITDLEFSKDGL-TLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp TTSCEEEEETTCTTSCCE-EESCCCSEEESCS--SCCCEEEEEECTTSS-CEEEEECTTSCEEEEES
T ss_pred cCCEEEEEEcccCCCCCc-chhccccccCCCc--ccceEEEEEEcCCCc-EEEEEecCCCCCEEEEC
Confidence 999999999986322111 000 000111111 237889999999765 4555 44778887553
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.95 E-value=1 Score=42.48 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=55.9
Q ss_pred CCCEEEEEECC------CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeC---------CCeEEEEECCC
Q 008939 310 DGTYLATVGRD------GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGE---------DDLVQVWSMED 372 (548)
Q Consensus 310 ~g~~l~s~~~d------g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~---------dg~I~vwd~~~ 372 (548)
++++++.|+.+ ..+.+||..+.+-... +....... +++. -++++++.|+. -..+.+||+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence 56677777655 4688999987754322 11111111 2222 36677777763 34588999988
Q ss_pred ceeEE--eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCCe
Q 008939 373 RKVVA--WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDE 429 (548)
Q Consensus 373 ~~~~~--~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~~ 429 (548)
.+-.. .+......-..+.+ ++ ++++.|+.+ ..+.+||+.+.+
T Consensus 179 ~~W~~~~~~p~~r~~~~~~~~---------~~------~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 179 ETWTELCPMIEARKNHGLVFV---------KD------KIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp TEEEEECCCSSCCBSCEEEEE---------TT------EEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CeEEECCCccchhhcceEEEE---------CC------EEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 75332 22211222223333 44 566666653 356777777654
No 328
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.89 E-value=0.13 Score=48.78 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=37.9
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCCC-----eEEEEECCCcee
Q 008939 310 DGTYLATVGRD-----GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGEDD-----LVQVWSMEDRKV 375 (548)
Q Consensus 310 ~g~~l~s~~~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~dg-----~I~vwd~~~~~~ 375 (548)
++++++.|+.+ ..+.+||+.+.+-... +....... +++ .-++++++.|+.++ .|.+||+++.+-
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA-GVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC-eEE-EECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 56777777654 3688999987754322 11111111 122 23677778877653 488999887653
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.89 E-value=1.6 Score=43.29 Aligned_cols=231 Identities=10% Similarity=0.113 Sum_probs=138.5
Q ss_pred CCCEEEEe---cC-CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccce
Q 008939 141 KGTYIIFN---VG-DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKL 216 (548)
Q Consensus 141 ~g~~l~~~---~~-d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~ 216 (548)
..++++.- .+ +.|-|-|+..+. .+..... ..-+...+|. ...|+.-. ...+.++|++.. .++
T Consensus 34 SDkyicVrE~~~~~~~vvIiDl~~~~--~~~rrpi---~AdsAIMnP~---~~iiALra-g~~lQiFnle~K-----~kl 99 (494)
T 1bpo_A 34 SDKFICIREKVGEQAQVVIIDMNDPS--NPIRRPI---SADSAIMNPA---SKVIALKA-GKTLQIFNIEMK-----SKM 99 (494)
T ss_dssp ETTEEEEEECCTTCCEEEEEETTSTT--SCEEEEC---CCSEEEECSS---SSCEEEEE-TTEEEEEETTTT-----EEE
T ss_pred cCceEEEEecCCCCCeEEEEECCCCC--cceeccc---ccceeeeCCC---CcEEEEec-CCeEEEEchHHh-----hhh
Confidence 35677762 22 289999999855 3333222 2334556776 44555554 678999999872 233
Q ss_pred eeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee
Q 008939 217 VGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH 296 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (548)
.... ....|.-=+|-.+.. |+... +..|+-|++..+ ..|++.++
T Consensus 100 ks~~--------~~e~VvfWkWis~~~--l~lVT-~taVyHWsi~~~-------------------------s~P~kvFd 143 (494)
T 1bpo_A 100 KAHT--------MTDDVTFWKWISLNT--VALVT-DNAVYHWSMEGE-------------------------SQPVKMFD 143 (494)
T ss_dssp EEEE--------CSSCCCEEEEEETTE--EEEEC-SSEEEEEESSSS-------------------------CCCEEEEE
T ss_pred ccee--------cCCCceEEEecCCCe--EEEEc-CCeeEEecccCC-------------------------CCchhhee
Confidence 2222 245677778877664 44443 358999998742 23445554
Q ss_pred ec----CCCeEEEEECCCCCEEEEEE-------CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC---CEEEEEeCC
Q 008939 297 IC----QGSINSIAFSTDGTYLATVG-------RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG---KYILTGGED 362 (548)
Q Consensus 297 ~h----~~~v~~~~~sp~g~~l~s~~-------~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg---~~l~sgs~d 362 (548)
.| ...|.....+++.++++..+ -.|.+.+|..+.+ .-..+.+|.+....+.+.-+. ++++.+...
T Consensus 144 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEec
Confidence 44 35677778888888877544 2477889998754 344567776555444332211 244444443
Q ss_pred ---CeEEEEECCCc---------eeEEecc---CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 363 ---DLVQVWSMEDR---------KVVAWGE---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 363 ---g~I~vwd~~~~---------~~~~~~~---~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+.++|-++... +.+..+. .-.+--.++..++. .| .+.....-|.|.++|+.+
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k------yg-------viyviTK~G~i~lyDleT 289 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK------HD-------VVFLITKYGYIHLYDLET 289 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT------TT-------EEEEEETTSEEEEEETTT
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc------CC-------EEEEEecCceEEEEeccc
Confidence 78888888532 1111111 12344456666652 34 566777889999999999
Q ss_pred CeEEeeee
Q 008939 428 DEIVVPLR 435 (548)
Q Consensus 428 ~~~~~~~~ 435 (548)
+.++..-+
T Consensus 290 gt~i~~nr 297 (494)
T 1bpo_A 290 GTCIYMNR 297 (494)
T ss_dssp CCEEEEEE
T ss_pred ceeeeeec
Confidence 99886544
No 330
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.72 E-value=0.066 Score=47.82 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=56.5
Q ss_pred CCEEEEEECCCeEEEEeCCCCeE-------EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCC
Q 008939 311 GTYLATVGRDGYLRVFDYSKEQL-------ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN 383 (548)
Q Consensus 311 g~~l~s~~~dg~v~vwd~~~~~~-------~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~ 383 (548)
..+|+....| ++++=....+.. ...-+.--..+..++|+|+|.+.++ .++.+.-.+..+.+....+.. .
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-A 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-C
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-c
Confidence 4466777777 666555543331 1111111246889999999987766 677777777655222111110 1
Q ss_pred CC--------eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 384 SW--------VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 384 ~~--------V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
.. -.++.|+| +| .+.++ .||.|.-|+-
T Consensus 80 t~IG~~Gw~~F~a~~fD~-------~G------~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDP-------NG------YLYAV--SKDKLYKASP 114 (236)
T ss_dssp EEEECSCGGGCSEEEECT-------TS------CEEEE--ETTEEEEESC
T ss_pred cEecccccccceEEEECC-------CC------CEEEe--CCCEEEEeCC
Confidence 11 36889999 98 45554 6798887764
No 331
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.58 E-value=1.8 Score=41.77 Aligned_cols=159 Identities=12% Similarity=0.093 Sum_probs=79.2
Q ss_pred CCCceEEEecCCCCCCceEEEEEc-CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC---CCcEEEE
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLN-SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG---GDGAFVV 248 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~---~~~~l~s 248 (548)
-..++.++|.|+ +. |++... .|.|++++.... +. ...................|+++|+ +. .|++
T Consensus 31 L~~P~~ia~~pd---G~-llVter~~G~I~~v~~~~g-----~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g-~lYv 99 (347)
T 3das_A 31 LNSPWGLAPLPG---GD-LLVSSRDEATITRVDAKTG-----RK-TELGEVPGVSPSGEGGLLGIALSPDYASDH-MVYA 99 (347)
T ss_dssp CSSEEEEEECTT---SC-EEEEETTTCEEEEECTTTC-----CE-EEEEECTTCCCBTTBSEEEEEECTTHHHHC-EEEE
T ss_pred CCCceEEEEcCC---Cc-EEEEEecCCEEEEEECCCC-----cE-eeecccCceeecCCCCceeeEeccccccCC-EEEE
Confidence 457889999998 55 555555 899998874321 11 1001111111113567899999996 33 4444
Q ss_pred E---eCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee-ecCCCeEEEEECCCCCEEEEEEC-----
Q 008939 249 G---HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGR----- 319 (548)
Q Consensus 249 ~---~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~----- 319 (548)
. ..++.|.-|.+.......... .....+ +..+. .....-..|.|.|||.++++.+.
T Consensus 100 ~yt~~~~~~v~R~~~~~~~~~~~~~---~~~~~i------------~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~ 164 (347)
T 3das_A 100 YFTSASDNRIVRMLYDEKKPSGEQL---GAPDTV------------FRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTG 164 (347)
T ss_dssp EEECSSSEEEEEEEBCTTSCTTCCB---CCCEEE------------EEEECCCSSCCCCCEEECTTSCEEEECBCTTCGG
T ss_pred EEecCCCCEEEEEEeCCCCcccccC---CCcEEE------------EEcCCCCCCccCccccCCCCCCEEEEECCCCCCc
Confidence 3 234455555554311000000 000000 00010 01123457999999987776542
Q ss_pred --------CCeEEEEeCCCC---------eEEEeeeecCCceEEEEEccCCCEEEEE
Q 008939 320 --------DGYLRVFDYSKE---------QLICGGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 320 --------dg~v~vwd~~~~---------~~~~~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
.|.|.-.+.... ..+.. .+|. ....++|+|+|++.++-
T Consensus 165 ~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 165 LSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp GTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEE
T ss_pred cccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEe
Confidence 245555555421 11211 2343 35678999998766553
No 332
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.38 E-value=0.24 Score=44.23 Aligned_cols=112 Identities=12% Similarity=0.142 Sum_probs=64.0
Q ss_pred cceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC
Q 008939 231 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD 310 (548)
Q Consensus 231 ~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 310 (548)
..+.+++|+|++. +.++ .+|.++-.+..+..... -+.. ...+... -| ....++.|.|+
T Consensus 41 ~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~-W~~s-----~t~IG~~---------Gw----~~F~a~~fD~~ 98 (236)
T 1tl2_A 41 SNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDN-WMGR-----AKKIGNG---------GW----NQFQFLFFDPN 98 (236)
T ss_dssp TTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCC-HHHH-----CEEEECS---------CG----GGCSEEEECTT
T ss_pred ccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccc-cccc-----ccEeccc---------cc----ccceEEEECCC
Confidence 3677999999887 5555 77876665543311100 0000 0000000 00 11468999999
Q ss_pred CCEEEEEECCCeEEEEeCCCCeE-------EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 008939 311 GTYLATVGRDGYLRVFDYSKEQL-------ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 368 (548)
Q Consensus 311 g~~l~s~~~dg~v~vwd~~~~~~-------~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vw 368 (548)
|.+.++ .||.|.-++--+... ......--..+..|.+.|+|.+.++. |+.+.-+
T Consensus 99 G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~ 159 (236)
T 1tl2_A 99 GYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA 159 (236)
T ss_dssp SCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred CCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEec
Confidence 987777 569998887633211 11111112467899999999877776 7775443
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.26 E-value=0.28 Score=46.73 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=36.6
Q ss_pred CCCEEEEEECCC-----eEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCCC--------------eEEEE
Q 008939 310 DGTYLATVGRDG-----YLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGEDD--------------LVQVW 368 (548)
Q Consensus 310 ~g~~l~s~~~dg-----~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~dg--------------~I~vw 368 (548)
++++++.|+.++ .+.+||+.+.+-... +........++. -++++++.|+.++ .|.+|
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~y 273 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRY 273 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEe
Confidence 567777777654 588899987754322 111111112222 2667777777532 36778
Q ss_pred ECCCcee
Q 008939 369 SMEDRKV 375 (548)
Q Consensus 369 d~~~~~~ 375 (548)
|+++.+-
T Consensus 274 d~~~~~W 280 (315)
T 4asc_A 274 NEEEKKW 280 (315)
T ss_dssp ETTTTEE
T ss_pred cCCCChh
Confidence 8877643
No 334
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.17 E-value=0.22 Score=47.37 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=36.9
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCce
Q 008939 310 DGTYLATVGRD-----GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRK 374 (548)
Q Consensus 310 ~g~~l~s~~~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~ 374 (548)
++++++.|+.+ ..+.+||+.+.+-... +....... +++. -++++++.|+.+ ..|.+||+++.+
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccce-EEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 56677777654 5689999987754322 11111111 2222 267777777754 457888887754
No 335
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.97 E-value=5 Score=43.32 Aligned_cols=219 Identities=16% Similarity=0.159 Sum_probs=117.9
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ 210 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~ 210 (548)
..|.++..+.+|. |.+++.+.+..||..+..... ........+.++... ...|.+++.+ -|+.+|..+
T Consensus 63 ~~i~~i~~d~~g~-lWigT~~Gl~~yd~~~~~f~~--~~~~~~~~i~~i~~~-----~g~lWigt~~-Gl~~~~~~~--- 130 (758)
T 3ott_A 63 TRIYCGVIIDNTY-LYMGTDNGILVYNYRADRYEQ--PETDFPTDVRTMALQ-----GDTLWLGALN-GLYTYQLQS--- 130 (758)
T ss_dssp SCEEEEEEETTTE-EEEEETTEEEEEETTTTEECC--CSCCCCSCEEEEEEE-----TTEEEEEETT-EEEEEETTT---
T ss_pred ceEEEEEEcCCCc-EEEEeCCCeEEEeCCCCEEEC--cccCCCceEEEEEec-----CCcEEEEcCC-cceeEeCCC---
Confidence 4566777777664 445556688999987643211 000112345555432 2357778766 678888653
Q ss_pred ccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCC
Q 008939 211 DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSN 290 (548)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (548)
..+..... ... ......|.++....++. |..+..+| |..|+..... +....... ..
T Consensus 131 ---~~~~~~~~-~~~-~l~~~~i~~i~~d~~g~--lWigt~~G-l~~~~~~~~~-----~~~~~~~~-----------~~ 186 (758)
T 3ott_A 131 ---RKLTSFDT-RRN-GLPNNTIYSIIRTKDNQ--IYVGTYNG-LCRYIPSNGK-----FEGIPLPV-----------HS 186 (758)
T ss_dssp ---CCEEEECH-HHH-CCSCSCEEEEEECTTCC--EEEEETTE-EEEEETTTTE-----EEEECCCC-----------CT
T ss_pred ---CeEEEecc-CCC-CcCCCeEEEEEEcCCCC--EEEEeCCC-HhhCccCCCc-----eEEecCCC-----------cc
Confidence 11111100 000 11245688888877776 55566554 7777765421 00000000 00
Q ss_pred CeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 008939 291 PIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM 370 (548)
Q Consensus 291 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~ 370 (548)
......|.++....++..|..++. +-|..+|..+++...........|.++....+|.+. .|+.+ -+.+++.
T Consensus 187 -----~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~ 258 (758)
T 3ott_A 187 -----SQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTDN-GLYVYHN 258 (758)
T ss_dssp -----TCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEETT-EEEEECC
T ss_pred -----ccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeCC-ceeEEec
Confidence 000134788888777665555654 458889988776432211122458888888888644 45544 5788888
Q ss_pred CCceeEEecc-------CCCCCeEEEEEec
Q 008939 371 EDRKVVAWGE-------GHNSWVSGVAFDS 393 (548)
Q Consensus 371 ~~~~~~~~~~-------~h~~~V~~v~~~p 393 (548)
.+.+...... -....|.++..+.
T Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 259 DTTPLQHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp TTSCCEEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCcEEEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 7654332211 1234688888876
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.52 E-value=0.24 Score=48.14 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=28.6
Q ss_pred eEEEEeCCCCe--EEEeeeecCCceEEEEEccCCCEEEEEeCCC------eEEEEECCCceeEEe
Q 008939 322 YLRVFDYSKEQ--LICGGKSYYGALLCCAWSMDGKYILTGGEDD------LVQVWSMEDRKVVAW 378 (548)
Q Consensus 322 ~v~vwd~~~~~--~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg------~I~vwd~~~~~~~~~ 378 (548)
.+.+||+.+.+ .+..+........ +...++++++.|+.++ .|.++++++++.+..
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 47789987654 3333322111112 2334678888888653 356668887765544
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.15 E-value=1 Score=42.71 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=35.8
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC--------------CeEEEE
Q 008939 310 DGTYLATVGRD-----GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED--------------DLVQVW 368 (548)
Q Consensus 310 ~g~~l~s~~~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d--------------g~I~vw 368 (548)
++++++.|+.+ ..+.+||+.+.+-... +....... +++ .-++++++.|+.+ ..+.+|
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~y 283 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKY 283 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC-EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEE
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce-EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEE
Confidence 56677777643 3577899887653321 21111111 222 2356777777653 357788
Q ss_pred ECCCceeE
Q 008939 369 SMEDRKVV 376 (548)
Q Consensus 369 d~~~~~~~ 376 (548)
|+++.+-.
T Consensus 284 d~~~~~W~ 291 (318)
T 2woz_A 284 EDDKKEWA 291 (318)
T ss_dssp ETTTTEEE
T ss_pred eCCCCEeh
Confidence 88776543
No 338
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=94.06 E-value=3.5 Score=45.88 Aligned_cols=178 Identities=16% Similarity=0.129 Sum_probs=87.4
Q ss_pred eEEEEEccCCC-----CCCeEEEecCC-CCceEEEec-CCCCCCceEEEEEcCCcEEEEEeeeccccccc-ce--eeeee
Q 008939 152 AIFISDLNSQD-----KDPIKSIHFSN-SNPVCHAFD-QDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK-KL--VGAHH 221 (548)
Q Consensus 152 ~v~vwd~~~~~-----~~~i~~~~~~~-~~~~~~~~~-p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~-~~--~~~~~ 221 (548)
++.+.++.-.. ....-.++|.. -.+.|++|. +...+.-.+.+-...|.++-..++...-.... .. .-...
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~l~~~Fp~~i~p~~v~f~d~~~~~~L~v~vit~~~~Ly~l~l~~~~f~~~~~~~~~~W~~~ 162 (950)
T 4gq2_M 83 TLTIFDVSLNSKKEPLSKFNVKIHFPSNVMKDGVAFSFSEHSDTTIIYAITHARVLYYIRLSKTWFQLPDARLDDDWCLC 162 (950)
T ss_dssp EEEEEECCCSCCSSCCCCEEEEEECSSCEEEEEEEEEEETGGGEEEEEEEETTCCEEEEEECTHHHHSTTCCCCTTSEEE
T ss_pred eEEEEEeeccCCccccCCeEEEEECCCcccCCceEEeccCCCCeEEEEEEcCCCCEEEEEECHHHccCcccccccccccc
Confidence 56666654211 11234555532 244688886 33333556778889999999888753110000 00 00111
Q ss_pred eccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee---c
Q 008939 222 YNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI---C 298 (548)
Q Consensus 222 ~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h 298 (548)
+.+..-..+.+..-.+.+|+ .++++-.||.+.-.+.+........ ..-+...+...... .-+.+..+. -
T Consensus 163 ~~p~~f~~r~p~~l~av~~~---~l~Vsl~dGgLlrl~r~~~~~~~~~--~~f~~~s~~~sl~~---l~~~~~~~~~~~~ 234 (950)
T 4gq2_M 163 YRPISFLNQKPDLMAAISTS---EICVSFFNGGLTKIILNPKDASHYE--QHIDDSSYLFSLKK---YLSLQAFKADYRS 234 (950)
T ss_dssp ECCGGGTTSCEEEEEECSSS---EEEEEETTSCEEEEEEETTTTEEEE--EEECCCCCCCBCC----------CCSSCCC
T ss_pred ccCcCccCCCceEEEEEcCC---eEEEEECCCCEEEEEecCCCCCcce--eeecCCcHHHhhhh---hcccccCCCCCCC
Confidence 11211112333333333333 5666777777655544332111000 00000000000000 000000011 1
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee
Q 008939 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG 337 (548)
Q Consensus 299 ~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~ 337 (548)
...+.+++..++..++++.+.|+++|+|++.+++++.+.
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 235677888888889999999999999999999988764
No 339
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.49 E-value=9.8 Score=40.97 Aligned_cols=254 Identities=12% Similarity=0.062 Sum_probs=134.5
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe-------cCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH-------FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~-------~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
..|.++..+.+|.+.+.. .+-+..++..++....+..+. .....|.++.-+.+ + .|.+|+ ++-|..|
T Consensus 324 ~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~---g-~lWigt-~~GL~~~ 397 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKE---Q-QLWIAT-DGSINRY 397 (758)
T ss_dssp CBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTT---S-CEEEEE-TTEEEEE
T ss_pred ceEEEEEEcCCCCEEEee-CCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCC---C-CEEEEe-CCcHhhc
Confidence 457777778888776654 456777765543222222222 12235677766554 2 477787 5678889
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC-CCCCcccccccceeeee
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA-GDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~ 282 (548)
|..+. +.................|.++.-.+++ .|..|...+-|.++|..+... ....+. ....+...
T Consensus 398 ~~~~~------~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigT~~~Gl~~~~~~~~~~~~~~~~~---~~~~~~~~ 466 (758)
T 3ott_A 398 DYATR------QFIHYNIVDNTGTYNTNWTYYIFEDTAG--QLWISTCLGGIFVVDKHKLMQSTSGQYI---AEQNYSVH 466 (758)
T ss_dssp ETTTT------EEEEEEEECCC--CBSSSEEEEEECTTS--EEEEEESSSCEEEEEHHHHHHCCSSEEE---CSEEECGG
T ss_pred CcCCC------cEEEeecCCCcCCCCCceEEEEEEcCCC--CEEEEECCCceEEEccccccccCCccee---cccccccc
Confidence 87641 1111111111111134567888776666 577788777788888652000 000000 00000000
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee---cCCceEEEEEccCCCEEEEE
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS---YYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~---~~~~v~~l~~spdg~~l~sg 359 (548)
. ......|.++...++|.+.+.++..+-|..+|..+++....... ....+.++....+|.+.+ |
T Consensus 467 ~------------~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-g 533 (758)
T 3ott_A 467 N------------GLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-G 533 (758)
T ss_dssp G------------TCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-E
T ss_pred c------------ccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-E
Confidence 0 00124588899888888665333344588899987765432111 123577888888887554 4
Q ss_pred eCCCeEEEEECCCceeEEe-ccC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEE
Q 008939 360 GEDDLVQVWSMEDRKVVAW-GEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 360 s~dg~I~vwd~~~~~~~~~-~~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~ 431 (548)
+.+ -|..||..+.+.... ..+ ....|.++.. . +| . |..++.+| |..+|..+.+..
T Consensus 534 t~~-Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~-~-------~g------~-lWi~t~~G-l~~~~~~~~~~~ 590 (758)
T 3ott_A 534 FHG-GVMRINPKDESQQSISFGSFSNNEILSMTC-V-------KN------S-IWVSTTNG-LWIIDRKTMDAR 590 (758)
T ss_dssp ETT-EEEEECC--CCCCBCCCCC---CCEEEEEE-E-------TT------E-EEEEESSC-EEEEETTTCCEE
T ss_pred ecC-ceEEEecCCCceEEecccCCCccceEEEEE-C-------CC------C-EEEECCCC-eEEEcCCCceeE
Confidence 554 478888766543211 111 2356777765 3 56 3 33344444 777888776543
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.59 E-value=4.4 Score=43.29 Aligned_cols=201 Identities=12% Similarity=0.153 Sum_probs=98.7
Q ss_pred CCCCEEEEecC-----CeEEEEEccCCCCCCeE-E-----EecCCCCceEEEecCCCCCCceEEEEEcCC------cEEE
Q 008939 140 GKGTYIIFNVG-----DAIFISDLNSQDKDPIK-S-----IHFSNSNPVCHAFDQDAKDGHDLLIGLNSG------DVYS 202 (548)
Q Consensus 140 ~~g~~l~~~~~-----d~v~vwd~~~~~~~~i~-~-----~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg------~I~i 202 (548)
.++.++++++. +.+.+||..+..+..+. . +........++.+..+ +..++.|+.++ .+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~---~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN---NQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT---TEEEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC---CEEEEEcCCCCCCCccccEEE
Confidence 45566666553 36889998875433332 1 1101112223333213 56777777543 5788
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
||+.+..+.....+ .. .... .+++...++. +++.|+.++ .+.+||..++. .........
T Consensus 473 yd~~t~~W~~~~~~------p~----~R~~-h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~----- 533 (695)
T 2zwa_A 473 FDMKTREWSMIKSL------SH----TRFR-HSACSLPDGN-VLILGGVTEGPAMLLYNVTEEI--FKDVTPKDE----- 533 (695)
T ss_dssp EETTTTEEEECCCC------SB----CCBS-CEEEECTTSC-EEEECCBCSSCSEEEEETTTTE--EEECCCSSG-----
T ss_pred EeCCCCcEEECCCC------CC----Cccc-ceEEEEcCCE-EEEECCCCCCCCEEEEECCCCc--eEEccCCCC-----
Confidence 88776433322111 00 0111 1222223666 788887654 68899887521 000000000
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEEC--C-----CeEEEEeCCCCeE-----EEeeee---cCCce
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGR--D-----GYLRVFDYSKEQL-----ICGGKS---YYGAL 344 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~--d-----g~v~vwd~~~~~~-----~~~~~~---~~~~v 344 (548)
.|.. .....++.+..+ +++++.|+. + ..+.+||+.+.+- -..+.. ....-
T Consensus 534 ---------~p~~-----r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~ 599 (695)
T 2zwa_A 534 ---------FFQN-----SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYG 599 (695)
T ss_dssp ---------GGGS-----CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBS
T ss_pred ---------CCCc-----ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCccc
Confidence 0000 011223455554 667777765 2 4688999987761 111111 11111
Q ss_pred EEEEEccCCCEEEEEeC--------CCeEEEEECCCceeE
Q 008939 345 LCCAWSMDGKYILTGGE--------DDLVQVWSMEDRKVV 376 (548)
Q Consensus 345 ~~l~~spdg~~l~sgs~--------dg~I~vwd~~~~~~~ 376 (548)
.+++...++++++.|+. ...|.+||+.+.+-.
T Consensus 600 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 600 SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 23333444777888774 346899999877543
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.38 E-value=9.9 Score=38.12 Aligned_cols=68 Identities=7% Similarity=0.124 Sum_probs=37.5
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCC-cEEEEEeeecccccccceeeeeeeccCCc--ccCcceEEEEEecC---CCcE
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSG-DVYSVSLRQQLQDVGKKLVGAHHYNKDGS--VNNSRCTSVTWVPG---GDGA 245 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg-~I~iwdl~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~p~---~~~~ 245 (548)
.-..++.++|.|+ ++ |+++...| .|++++... ++ ......+..... .....+..|+|+|+ +. .
T Consensus 25 ~l~~P~~~a~~pd---G~-l~V~e~~gg~I~~~~~~~-----g~-~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g-~ 93 (454)
T 1cru_A 25 NLNKPHALLWGPD---NQ-IWLTERATGKILRVNPES-----GS-VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP-Y 93 (454)
T ss_dssp CCSSEEEEEECTT---SC-EEEEETTTCEEEEECTTT-----CC-EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC-E
T ss_pred CCCCceEEEEcCC---Cc-EEEEEcCCCEEEEEECCC-----Cc-EeEEecCCccccccCCCCceeEEEECCCcCcCC-E
Confidence 3457899999998 55 55566665 688886432 11 111111111100 12456789999996 44 4
Q ss_pred EEEEe
Q 008939 246 FVVGH 250 (548)
Q Consensus 246 l~s~~ 250 (548)
|.++.
T Consensus 94 lYv~~ 98 (454)
T 1cru_A 94 IYISG 98 (454)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.86 E-value=5.9 Score=45.36 Aligned_cols=218 Identities=13% Similarity=0.172 Sum_probs=110.8
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecC----CCCceEEEecCCCCCCceEE-EEE------cCC
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFS----NSNPVCHAFDQDAKDGHDLL-IGL------NSG 198 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~----~~~~~~~~~~p~~~~~~~l~-~g~------~dg 198 (548)
.+.|..=.|-.+ +.|+.-+...|+-|++.. ...|++-+.-+ ...+..-.-+++ ...++ +|- -.|
T Consensus 105 ~e~VvfWkWis~-~~l~lVT~~aVyHW~~~~-~s~P~k~fdR~~~L~~~QIinY~~d~~---~kW~~l~gi~~~~~~v~G 179 (1630)
T 1xi4_A 105 TDDVTFWKWISL-NTVALVTDNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAK---QKWLLLTGISAQQNRVVG 179 (1630)
T ss_pred CCCceEEEecCC-CeeEEEcCCeEEEeccCC-CCccHHHHhcchhcccCeeEEeeeCCC---CCeEEEEeeccCCCcccc
Confidence 445555566543 455666778999999975 33565444433 345555555555 44443 332 347
Q ss_pred cEEEEEeeeccccccccee-eeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 199 DVYSVSLRQQLQDVGKKLV-GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
.+.+|+++....+...-.. ....+..++..++..+.|.+.- .. ..+.++|-++.........++.. ..
T Consensus 180 ~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~--~~-------~g~kLhi~Ei~~~~~~~~~f~kk--~~ 248 (1630)
T 1xi4_A 180 AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR--GQ-------AGGKLHIIEVGTPPTGNQPFPKK--AV 248 (1630)
T ss_pred eeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEe--cC-------CCceEEEEecCCCccCCCCCccc--cc
Confidence 7999988864332211111 0111111221122223332221 11 12689999986531111222111 10
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEE
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
...+.. ..-..-..++..++.-..+...+.-|.|.+||+.++.++..-+--...|...+......-++
T Consensus 249 ~~~~~~------------~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~ 316 (1630)
T 1xi4_A 249 DVFFPP------------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 316 (1630)
T ss_pred cccCCc------------ccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceE
Confidence 000000 00123345677788767888889999999999999988765554444454444433323344
Q ss_pred EEeCCCeEEEEECCCcee
Q 008939 358 TGGEDDLVQVWSMEDRKV 375 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~~~ 375 (548)
.-...|.|.-..++....
T Consensus 317 ~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 317 GVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred EEcCCceEEEEEEccchh
Confidence 444566665555554433
No 343
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.66 E-value=11 Score=35.37 Aligned_cols=174 Identities=9% Similarity=0.122 Sum_probs=92.9
Q ss_pred CCCCEEEEec---CCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC--------------CcEEE
Q 008939 140 GKGTYIIFNV---GDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS--------------GDVYS 202 (548)
Q Consensus 140 ~~g~~l~~~~---~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d--------------g~I~i 202 (548)
.+|..|.+.. ...|+..+.+... ...+.- . .+--++++ +..|+..... ..|+.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~---~~~l~~--~--~~~~i~~~---g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~ 92 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN---IHKLSN--D--TAMYINAD---KNYVYYVRNNNQKITSQTFFSYDRNSLCR 92 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS---CEEEEE--E--EEEEEEEC---SSEEEEEEECC------CCSSCCSEEEEE
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC---CEEccC--C--ceeeEEEc---CCEEEEEECCCCcccccceeccCCCeEEE
Confidence 4677777754 2377777766533 222221 1 13445666 6666666543 35666
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH--ADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.++... .+..+ .... +..|+++++ .|+-.. .++.-.||.+..++....
T Consensus 93 i~~dg~----~~~~l-----------~~~~--~~~~s~~g~-~Iy~~~~~~~~~~~Iy~~~~dGs~~~------------ 142 (302)
T 3s25_A 93 IKRNGH----GSTVL-----------DPDP--CIYASLIGN-YIYYLHYDTQTATSLYRIRIDGEEKK------------ 142 (302)
T ss_dssp EETTSC----CCEEE-----------ECSC--EEEEEEETT-EEEEEEESSSSCEEEEEEETTSCCCE------------
T ss_pred EeCCCC----cceEe-----------ecCC--ccEEEEeCC-EEEEEeecCCCCceEEEEECCCCCeE------------
Confidence 666541 11111 1111 236788888 555544 455556665554332211
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR-DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
.+.. ..+ ..|+++++.|+..+. ...|.+.++..+.....+. +... ..+.|++.+|+-.
T Consensus 143 -------------~lt~--~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t 201 (302)
T 3s25_A 143 -------------KIKN--HYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYM 201 (302)
T ss_dssp -------------EEES--SCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEE
T ss_pred -------------EEeC--CCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEE
Confidence 1111 112 346778888887665 5678888887665433332 2222 3456999888766
Q ss_pred eCC--CeEEEEECCCce
Q 008939 360 GED--DLVQVWSMEDRK 374 (548)
Q Consensus 360 s~d--g~I~vwd~~~~~ 374 (548)
..+ ..|..-+++...
T Consensus 202 ~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 202 DVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EGGGTTEEEEECSSSCC
T ss_pred EcCCCcEEEEEECCCCC
Confidence 543 356666776544
No 344
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.43 E-value=19 Score=36.15 Aligned_cols=115 Identities=14% Similarity=0.188 Sum_probs=60.4
Q ss_pred CCceeEEeCCCCC--EEEEecCCeEEEEEccCCC-CCCeEEEe--cC-------CCCceEEEecCCCCCCceEEEEEcC-
Q 008939 131 TSMTNTNFDGKGT--YIIFNVGDAIFISDLNSQD-KDPIKSIH--FS-------NSNPVCHAFDQDAKDGHDLLIGLNS- 197 (548)
Q Consensus 131 ~~v~~~~~~~~g~--~l~~~~~d~v~vwd~~~~~-~~~i~~~~--~~-------~~~~~~~~~~p~~~~~~~l~~g~~d- 197 (548)
..+..++|.|+|. ++++.....|++++..... ..++..+. +. ......++|+|+-.....|++....
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3456899999996 6666555589998754321 22343332 11 2467889999963323344444321
Q ss_pred ------------CcEEEEEeeec---cccc-ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 198 ------------GDVYSVSLRQQ---LQDV-GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 198 ------------g~I~iwdl~~~---~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
..|.-|.+... ..+. ..+++.. .......| .-..|+|.||+. ++++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~--~~~~~~~H--~g~~l~fgpDG~-LYv~~G 157 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLE--VAELHRKH--LGGQLLFGPDGF-LYIILG 157 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEE--EEESSSSS--CEEEEEECTTSC-EEEEEC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEE--cCCCCCcc--cCCcEeECCCCc-EEEEeC
Confidence 13444555421 0111 1122211 12222234 357999999998 444433
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=89.26 E-value=0.55 Score=45.24 Aligned_cols=118 Identities=11% Similarity=0.020 Sum_probs=74.1
Q ss_pred CEEEEEECCCeEEEEeCCCCeEEEeeeec-CCceEEEEE--cc-CCCEEEEE-eCCCeEEEEECCCceeEEeccC----C
Q 008939 312 TYLATVGRDGYLRVFDYSKEQLICGGKSY-YGALLCCAW--SM-DGKYILTG-GEDDLVQVWSMEDRKVVAWGEG----H 382 (548)
Q Consensus 312 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~--sp-dg~~l~sg-s~dg~I~vwd~~~~~~~~~~~~----h 382 (548)
.+++.++.||.|.-+|.++|+.+..++.. ..++....- .+ ++..++.. ..||.|..+|.+++.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999887754 122222110 01 23333343 5899999999988854433321 1
Q ss_pred CCCeEEEEEecCCCCC---CCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 383 NSWVSGVAFDSYWSQP---NSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~---~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
.+++.. .=.|.--++ ..+| .+.+++.++.+...|+++|+.+..+...
T Consensus 91 ~SP~~~-~~~pvv~~~~~~~~~g-------~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 91 TSPLHL-KTNIVVNDSGKIVEDE-------KVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TCSEEE-ECC----------CCE-------EEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cccccc-CCCceeecccccccCC-------EEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 222221 100000000 0033 7889999999999999999999988764
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=88.48 E-value=25 Score=37.33 Aligned_cols=109 Identities=12% Similarity=0.023 Sum_probs=62.8
Q ss_pred CCCCEEEEEECCC--eEEEEeCCCCeEEEee-----eecCCceEEEEEccC-CCEEEEEeC--C-----CeEEEEECCCc
Q 008939 309 TDGTYLATVGRDG--YLRVFDYSKEQLICGG-----KSYYGALLCCAWSMD-GKYILTGGE--D-----DLVQVWSMEDR 373 (548)
Q Consensus 309 p~g~~l~s~~~dg--~v~vwd~~~~~~~~~~-----~~~~~~v~~l~~spd-g~~l~sgs~--d-----g~I~vwd~~~~ 373 (548)
.++++++.|+.++ .+.+||..+.+-...- ........++.+..+ +++++.|+. + ..+.+||+.+.
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 4778888887654 6899999877543221 111122233555555 667777765 2 45889999876
Q ss_pred e------e--EEecc-CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC--------CeEEEEECCCCeEE
Q 008939 374 K------V--VAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD--------TRLLLWDLEMDEIV 431 (548)
Q Consensus 374 ~------~--~~~~~-~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D--------g~i~lwd~~~~~~~ 431 (548)
+ . +.... ........+.+. ++ ++++.||.+ ..|.+||+.+.+-.
T Consensus 579 ~w~~~~~W~~~~~~p~~~R~~~~~~~~~--------~~------~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 579 NATEPITVIKKLQHPLFQRYGSQIKYIT--------PR------KLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp CSSCCEEEEEEEECGGGCCBSCEEEEEE--------TT------EEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred ccccceEEEEcCCCCCCCcccceEEEeC--------CC------EEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 6 1 11111 111222333442 25 677777743 45888898887654
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=86.35 E-value=22 Score=33.34 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=43.2
Q ss_pred EEECCCCCEEEEEE--C--CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC-CCeEEEEECCCceeEEec
Q 008939 305 IAFSTDGTYLATVG--R--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 305 ~~~sp~g~~l~s~~--~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~~~~~~~~~ 379 (548)
..|++++++|+... . +..|...++.... ...+..+.. .+++++++.|+-.+. ...|.+-++..+.....+
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe
Confidence 36778888888776 2 3455556665332 223333322 456788888876655 678888888766544333
Q ss_pred c
Q 008939 380 E 380 (548)
Q Consensus 380 ~ 380 (548)
.
T Consensus 184 ~ 184 (302)
T 3s25_A 184 D 184 (302)
T ss_dssp C
T ss_pred C
Confidence 3
No 348
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=83.94 E-value=41 Score=35.59 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=88.6
Q ss_pred CCCCEEEEe-cCC--eEEEEEccCCCCCCeEEEecCCCC--ceEEEecCCCC-CCceEEEEEcCCcEEEEEeeec-cccc
Q 008939 140 GKGTYIIFN-VGD--AIFISDLNSQDKDPIKSIHFSNSN--PVCHAFDQDAK-DGHDLLIGLNSGDVYSVSLRQQ-LQDV 212 (548)
Q Consensus 140 ~~g~~l~~~-~~d--~v~vwd~~~~~~~~i~~~~~~~~~--~~~~~~~p~~~-~~~~l~~g~~dg~I~iwdl~~~-~~~~ 212 (548)
+.++++++- .+| .+.|..++.......-.++|...- +.| +|...+. +.-.+.+-..+|.++-..++.. ....
T Consensus 63 ~~~~~i~~rVl~d~~vL~l~~vd~~~~~~ti~i~FP~~i~~p~~-~f~~~e~~d~L~I~vIt~s~~lytl~L~~dff~~~ 141 (729)
T 3f7f_A 63 SNSEYICYHFSSRSTLLTFYPLSDAYHGKTINIHLPNASMNQRY-TLTIQEVEQQLLVNVILKDGSFLTLQLPLSFLFSS 141 (729)
T ss_dssp TTSCEEEEEECTTSCEEEEEEGGGTTTSCEEEEECSSCBTTGGG-GEEEEECSSEEEEEEEBSSSCEEEEEEEHHHHHSC
T ss_pred cCCcEEEEEEeCCceEEEEEEcccccCCCEEEEECCccccCCCc-eEEecCCCCEEEEEEEccCCcEEEEEEcHHHhcCc
Confidence 567777763 233 778888775443345555654321 234 3333222 1223446677888877777641 0000
Q ss_pred ccceee--eeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCC
Q 008939 213 GKKLVG--AHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSN 290 (548)
Q Consensus 213 ~~~~~~--~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (548)
...... ...+.+..-..+.+..-++.+++ .++++-.||-+.-.+....+.. -+..-+...+...........
T Consensus 142 ~~~~~~~W~k~~~Py~F~~R~Ph~L~avs~~---~liVsL~DGGLLrL~r~~~~d~---~~~~Fnd~s~l~SL~~lf~~~ 215 (729)
T 3f7f_A 142 ANTLNGEWFHLQNPYDFTVRVPHFLFYVSPQ---FSVVFLEDGGLLGLKKVDGVHY---EPLLFNDNSYLKCLTRFFSRS 215 (729)
T ss_dssp CSCCCSCCBCCCCCSCTTTSCEEEEEECSSS---BEEEEETTSCEECCEESSSSCE---ECCCCCCCGGGGGGSTTCCTT
T ss_pred cccCchhhceeecCCcccccCCcEEEEECCC---eEEEEEcCCCEEEEEeccCCCc---ceeeecCCchhhhhHHhhcCC
Confidence 000000 00011111112344455555543 3666777776655554432111 000011111100000000000
Q ss_pred CeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee
Q 008939 291 PIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK 338 (548)
Q Consensus 291 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~ 338 (548)
+.. .....|.++.+ +..++++.+.|..+|+||+++++++....
T Consensus 216 ~~~---~~~~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 216 SKS---DYDSVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CSS---CCCCEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred CCC---CcCceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 000 11234665555 36799999999999999999999887654
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=83.39 E-value=8.3 Score=39.43 Aligned_cols=92 Identities=21% Similarity=0.276 Sum_probs=62.0
Q ss_pred eEEEEeCCC----Ce-EEEeeeecCCceEEEEEccCCCEEEEEeC-CCeEEEEECCCc------e-------eEEeccCC
Q 008939 322 YLRVFDYSK----EQ-LICGGKSYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMEDR------K-------VVAWGEGH 382 (548)
Q Consensus 322 ~v~vwd~~~----~~-~~~~~~~~~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~~~------~-------~~~~~~~h 382 (548)
.+.|.|.+. +. .+..+. -......+..+|||+++++++. +.++.++|++.- + .+...+ -
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP-~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~ 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVP-VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-L 376 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEE-ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-C
T ss_pred CeeEEccccccccCCceEEEEe-CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-C
Confidence 366677665 22 222222 2234557889999999887765 789999999742 1 133333 3
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
.-.....+|++ +| +...|.-.|.+|.-|++...
T Consensus 377 GlGPlHt~Fd~-------~G------~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 377 GLGPLHTTFDG-------RG------NAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CSCEEEEEECS-------SS------EEEEEETTTTEEEEEEHHHH
T ss_pred CCcccEEEECC-------CC------ceEeeeeecceEEEEeccHH
Confidence 34556789988 88 67777779999999999753
No 350
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.63 E-value=17 Score=41.33 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=31.6
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee
Q 008939 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG 337 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~ 337 (548)
.+.+++..++..++++.+.|+.+|||++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4556666778889999999999999999999988764
No 351
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=80.97 E-value=6.5 Score=37.68 Aligned_cols=119 Identities=9% Similarity=-0.003 Sum_probs=71.0
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEeccCC-CCCeEEEEEecCCCCCCCCCCccceeEEEEEE-eCCCeEEEEECCCCeEE
Q 008939 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGH-NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV-GQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 354 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~-~~Dg~i~lwd~~~~~~~ 431 (548)
.++++++.||.|.-+|.++|+.+-.++.. ..++.... .| ..+ .++ ..++.. ..||.|..+|..+|...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~-~~--~~~-~~~------~~~vv~p~~dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQ-EP--SRL-ETY------ETLIIEPFGDGNIYYFNAHQGLQK 80 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECC-CS--CTT-TSS------EEEEECCSTTTEEEEEETTTEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEec-CC--ccc-cCC------cEEEEEECCCCEEEEEECCCCcEE
Confidence 36889999999999999999988777643 12222211 11 000 122 233333 68999999999988666
Q ss_pred eeeecCCCCC-CceecCCCCccc-------cCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 432 VPLRRGPLGG-SPTFSTGSQSAH-------WDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 432 ~~~~~~~~~~-~~~~~~~~~~~~-------~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
..+....... +.... .+.... .+..+.+|..+..+...|..+++.+..+..
T Consensus 81 ~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 81 LPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp EEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 5544321111 11111 111111 456777888888888888888888777753
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=79.90 E-value=28 Score=34.89 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=62.7
Q ss_pred CCeEEEEECCCCC-EEEEEECCCeEEEEeCCCC---eEEEeee---------ecCCceEEEEEccC----CCEEEEEeC-
Q 008939 300 GSINSIAFSTDGT-YLATVGRDGYLRVFDYSKE---QLICGGK---------SYYGALLCCAWSMD----GKYILTGGE- 361 (548)
Q Consensus 300 ~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~---~~~~~~~---------~~~~~v~~l~~spd----g~~l~sgs~- 361 (548)
.....|+|.|++. .|+++...|.|++++.... +.+..+. .....+..|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999986 5666678999999975422 1122211 11457889999996 444443322
Q ss_pred -C----------CeEEEEECCC----------ceeEEecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 362 -D----------DLVQVWSMED----------RKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 362 -d----------g~I~vwd~~~----------~~~~~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
+ ..|.-|.+.. .+.+..+. ........|+|.| || ++.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-------DG------~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-------DG------FLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-------TS------CEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-------CC------cEEEEeCCCC
Confidence 1 1444465532 12332222 1223467899999 99 6777766543
No 353
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=79.15 E-value=6.4 Score=40.25 Aligned_cols=116 Identities=11% Similarity=0.007 Sum_probs=69.9
Q ss_pred cceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC
Q 008939 231 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD 310 (548)
Q Consensus 231 ~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 310 (548)
.....+..+|||+.+++.+-.+.++.|+|+++-......- +.+.... .+..... .-.....+|.++
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k--~~~~~~~-----------~~ae~e~-GlGPlHt~Fd~~ 388 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGK--LADPRDV-----------IVGEPEL-GLGPLHTTFDGR 388 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTC--CSCGGGG-----------EEECCBC-CSCEEEEEECSS
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcc--ccCcccc-----------eEeeccC-CCcccEEEECCC
Confidence 3456788899999666667789999999998511000000 0000000 0011111 134566899999
Q ss_pred CCEEEEEECCCeEEEEeCCCC----------eEEEeeeecCCceEEEE-----EccCCCEEEEEe
Q 008939 311 GTYLATVGRDGYLRVFDYSKE----------QLICGGKSYYGALLCCA-----WSMDGKYILTGG 360 (548)
Q Consensus 311 g~~l~s~~~dg~v~vwd~~~~----------~~~~~~~~~~~~v~~l~-----~spdg~~l~sgs 360 (548)
|.-..+..-|..|..|++... ..+..+.-|..+-.-.+ -.|||++|++..
T Consensus 389 G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 389 GNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred CceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 965666678999999999643 35555666655433222 257999999875
No 354
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=77.64 E-value=53 Score=31.72 Aligned_cols=75 Identities=19% Similarity=0.238 Sum_probs=37.0
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeee-----eccCC-cccCcceEEEEEecCCCcEEEE
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHH-----YNKDG-SVNNSRCTSVTWVPGGDGAFVV 248 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~v~~l~~~p~~~~~l~s 248 (548)
.+.++.++|.. ...|+++..++.|+..+ +.++....... +.+.. ......+.+|.+.|.....|++
T Consensus 178 ~i~~i~~d~~~--~~~l~vg~~~ggl~~s~------DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~v 249 (394)
T 3b7f_A 178 KMHSILVDPRD--PKHLYIGMSSGGVFEST------DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQ 249 (394)
T ss_dssp EEEEEEECTTC--TTCEEEEEETBEEEEES------STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEE
T ss_pred ceeEEEECCCC--CCEEEEEECCCCEEEEC------CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEE
Confidence 46788888752 33577776666554432 11222211100 00000 0001358899999975446777
Q ss_pred EeCCCcEEEE
Q 008939 249 GHADGNLYVY 258 (548)
Q Consensus 249 ~~~dg~v~vw 258 (548)
+...+ |+..
T Consensus 250 g~~~g-l~~s 258 (394)
T 3b7f_A 250 QNHCG-IYRM 258 (394)
T ss_dssp EETTE-EEEE
T ss_pred EcCCe-EEEe
Confidence 76544 4433
No 355
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=75.87 E-value=49 Score=30.42 Aligned_cols=201 Identities=9% Similarity=0.009 Sum_probs=105.4
Q ss_pred CCCCEEEEecCC---eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccce
Q 008939 140 GKGTYIIFNVGD---AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKL 216 (548)
Q Consensus 140 ~~g~~l~~~~~d---~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~ 216 (548)
....++++.... .+.+|++.......+ +. ....+..+.. ++- +...++..+.+|.|+...+.... ..+.-
T Consensus 34 t~~~ll~fT~~G~v~~~~~~~lp~~~~~~l--l~-~~e~i~~v~~-~~~-~~~~~v~~T~~G~iKr~~l~~~~--~~~~G 106 (276)
T 3no0_A 34 FTEGLFLVSNRGRVYWIAGSQALQGSKVSL--KS-REEKIVGAFI-REK-FGNRLLLATKKGYVKKIPLAEFE--YKAQG 106 (276)
T ss_dssp TTSCEEEEETTSEEEEECSHHHHTSEECCC--SS-TTCCEEEEEE-GGG-SCSEEEEEETTSEEEEEEGGGTT--TCSTT
T ss_pred CCCEEEEEcCCCeEEEEEhhhCccCccccc--CC-CCCEEEEEEC-CcC-CCCEEEEEeCCCEEEEEEHHHhh--hhcCC
Confidence 334455554444 445666654322222 22 3445555543 311 25689999999999999876532 11111
Q ss_pred eeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee
Q 008939 217 VGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH 296 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (548)
.....+. ..+.+..+......+ .++..+..|.++.++...-......- . ..+...+.
T Consensus 107 ~~~i~lk-----egD~l~~~~~~~~~~-~ill~T~~G~~~r~~~~eip~~gR~a----~-------------Gv~~i~L~ 163 (276)
T 3no0_A 107 MPIIKLT-----EGDEVVSIASSVDET-HILLFTKKGRVARFSVREVPPSTPGA----R-------------GVQGIKLE 163 (276)
T ss_dssp EECSCCC-----TTCCEEEEEECCSSC-EEEEEETTSEEEEEEGGGSCBCCTTC----C-------------CEECCCCC
T ss_pred eEEEecC-----CCCEEEEEEEeCCCC-EEEEEECCCEEEEEEhhhCCCcCCCC----C-------------CEEEEccC
Confidence 1111111 245566665555555 68888889999988875411100000 0 00001111
Q ss_pred ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC-------eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEE--
Q 008939 297 ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE-------QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQV-- 367 (548)
Q Consensus 297 ~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~v-- 367 (548)
. ...|..+...+++.+++..+..|.++...+..- +-+..+ ...+.+..+....+...++..+.+|.+..
T Consensus 164 ~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~ 241 (276)
T 3no0_A 164 K-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDK 241 (276)
T ss_dssp T-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEE
T ss_pred C-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEee
Confidence 1 245555555555678999999999999887422 112222 22344544433333345666677777777
Q ss_pred EECCC
Q 008939 368 WSMED 372 (548)
Q Consensus 368 wd~~~ 372 (548)
++..+
T Consensus 242 ~~~~~ 246 (276)
T 3no0_A 242 INQKD 246 (276)
T ss_dssp EEGGG
T ss_pred eCHHH
Confidence 76543
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=74.22 E-value=54 Score=30.15 Aligned_cols=221 Identities=12% Similarity=0.046 Sum_probs=107.0
Q ss_pred ceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc
Q 008939 133 MTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV 212 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~ 212 (548)
|..++...... ++.. +..|+.|-.+... .+-.-......+..++.... ..++. . ||.|+.|-....- +.
T Consensus 26 i~~ia~G~~h~-~~l~-~G~v~~wG~n~~G--qlg~p~~~~~~i~~ia~G~~----hs~~l-~-~G~v~~wG~n~~G-ql 94 (282)
T 3qhy_B 26 VDAIAGGYFHG-LALK-GGKVLGWGANLNG--QLTMPAATQSGVDAIAAGNY----HSLAL-K-DGEVIAWGGNEDG-QT 94 (282)
T ss_dssp CCEEEECSSEE-EEEE-TTEEEEEECCSSS--TTSCCGGGGSCCCEEEECSS----EEEEE-E-TTEEEEEECCTTS-TT
T ss_pred CcEEEeCCCeE-EEEE-CCEEEEEeCCCCC--CCCCCccCCCCEEEEEeCCC----EEEEE-E-CCEEEEeeCCCCC-CC
Confidence 44444443322 3333 4488888765422 11100112235555555432 23444 4 9999999765421 11
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCe
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 292 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (548)
+.+. .....|..|+..... .++. . ||.|+.|=....++.....+.
T Consensus 95 g~P~-----------~~~~~v~~ia~G~~h--s~al-~-~G~v~~wG~n~~gqlg~~~~~-------------------- 139 (282)
T 3qhy_B 95 TVPA-----------EARSGVDAIAAGAWA--SYAL-K-DGKVIAWGDDSDGQTTVPAEA-------------------- 139 (282)
T ss_dssp CCCG-----------GGSSSEEEEEEETTE--EEEE-E-TTEEEEEECCTTSTTSCCGGG--------------------
T ss_pred CCCc-----------ccCCCeEEEECcCCE--EEEE-e-CCeEEEecCCCCCcCCCCccC--------------------
Confidence 1100 013467777765543 2333 3 999999987765443211100
Q ss_pred eEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008939 293 ARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 293 ~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~ 372 (548)
...|..++...+ +.+.-. ||.|..|-......+..-......|..++...+. .++. .|+.|..|-...
T Consensus 140 ------~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 140 ------QSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp ------GSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCT
T ss_pred ------CCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCC
Confidence 134555654333 222233 7888888765321111111112356666654433 3344 588999996654
Q ss_pred ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 373 RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 373 ~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
...+..-......|..|+--. +- .++. . |+.|..|=...
T Consensus 208 ~gqlg~p~~~~~~v~~i~~G~-------~h-------~~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 208 YKQTTVPTEALSGVSAIASGE-------WY-------SLAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp TSTTCCCGGGGSSCCEEEECS-------SC-------EEEE-E-TTEEEEESTTC
T ss_pred CCCCCCCcccCCCceEEEcCC-------CE-------EEEE-E-CCEEEEecCCC
Confidence 221111001123466666533 21 2333 3 89999996554
No 357
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=65.13 E-value=91 Score=29.15 Aligned_cols=203 Identities=12% Similarity=0.061 Sum_probs=109.6
Q ss_pred CceEEEEEcCCcEEEEEeeeccccc--ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDV--GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 265 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~ 265 (548)
...++..+.+|.|+-..+....... ++-+. ...+ -..+.+..+......+ .++..+..|.++-+....-..
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~-~~~l-----ke~D~l~~~~~~~~~~-~ll~~T~~G~~~~~~~~~ip~ 80 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLS-SFDL-----NDGDEIVIALCVNTHD-YLFMISNEGKLYLINAYEIKD 80 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEE-CCCC-----CTTCCEEEEEEEETTC-EEEEEETTSEEEEEEGGGSCC
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCce-eccc-----CCCCEEEEEEEECCCC-EEEEEECCCeEEEEEHHHCCC
Confidence 4568889999999988775421110 00110 0110 1245555665555555 677788889988887643111
Q ss_pred CCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC---CCCEEEEEECCCeEEEEeCCC-------CeEEE
Q 008939 266 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST---DGTYLATVGRDGYLRVFDYSK-------EQLIC 335 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp---~g~~l~s~~~dg~v~vwd~~~-------~~~~~ 335 (548)
....-. +... .+.+ .+.. ...|.++...+ +..+|+..+..|.++...+.. +....
T Consensus 81 ~~r~~~----G~~i---------~~~l-~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i 145 (312)
T 1suu_A 81 SSRASK----GQNI---------SELI-NLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVI 145 (312)
T ss_dssp -----------CBG---------GGTS-CCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECB
T ss_pred CCccCC----CcCh---------hhcc-CCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEE
Confidence 000000 0000 0000 0111 12344433222 456888899999999888742 22223
Q ss_pred eeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc---------eeEEeccCCCCCeEEEEEecCCCCCCCCCCccc
Q 008939 336 GGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR---------KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAET 406 (548)
Q Consensus 336 ~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~---------~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~ 406 (548)
.+.. .+.+..+....+...++..+.+|.+..+...+- .....+. ....|..+..-. ++
T Consensus 146 ~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~-------~~---- 212 (312)
T 1suu_A 146 KLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVK-------EN---- 212 (312)
T ss_dssp CCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECT-------TC----
T ss_pred ecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEEC-------CC----
Confidence 3333 455666665555567888889999999987541 1222333 244555554433 33
Q ss_pred eeEEEEEEeCCCeEEEEECCC
Q 008939 407 VMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 407 ~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
..++..+..|.++..++..
T Consensus 213 --~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 213 --PYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp --SEEEEEETTSEEEEEEGGG
T ss_pred --CeEEEEECCCceEEEEHHH
Confidence 2577788888888877653
No 358
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=54.82 E-value=1.4e+02 Score=28.06 Aligned_cols=209 Identities=13% Similarity=0.100 Sum_probs=109.2
Q ss_pred CCCCCEEEEecCC---eEEEEEccCCCCC----CeEE-Eec-CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecc
Q 008939 139 DGKGTYIIFNVGD---AIFISDLNSQDKD----PIKS-IHF-SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQL 209 (548)
Q Consensus 139 ~~~g~~l~~~~~d---~v~vwd~~~~~~~----~i~~-~~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~ 209 (548)
+....++++.... .+.+|++...... ++.. +.+ ....+..+..-++-.+...++..+.+|.|+...+....
T Consensus 51 ~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~ 130 (327)
T 3uc1_A 51 STHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFD 130 (327)
T ss_dssp ETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGC
T ss_pred CCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhh
Confidence 3444455454443 4556676654211 1111 122 23455554443322236689999999999998877532
Q ss_pred cccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcC--CCCCCCCCcccccccceeeeecCCCC
Q 008939 210 QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKS--KDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
... +.-.....+. ..+.+..+....... .|+..+..|.++.+... .-......- .+
T Consensus 131 ~~~-r~G~~~i~lk-----e~D~lv~~~~~~~~d-~ill~T~~G~~~rf~~~~~eip~~gr~a----~G----------- 188 (327)
T 3uc1_A 131 SNR-SGGIVAVNLR-----DNDELVGAVLCSAGD-DLLLVSANGQSIRFSATDEALRPMGRAT----SG----------- 188 (327)
T ss_dssp CCC-SSCEESCBCC-----TTCCEEEEEEECTTC-EEEEEETTSEEEEEECCTTTSCCCCTTS----BC-----------
T ss_pred ccc-cCceEEEEEC-----CCCEEEEEEEecCCC-EEEEEECCCeEEEEECcccccCcCCcCC----CC-----------
Confidence 111 1111111111 245566665555555 67778888999988876 211000000 00
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe-------EEE--eeeecCCceEEEEEccCCCEEEE
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ-------LIC--GGKSYYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~-------~~~--~~~~~~~~v~~l~~spdg~~l~s 358 (548)
.....+. ....|.++...+++.+|+.++..|.++.-.+..-. -+. .+..-.+.+..+....+...++.
T Consensus 189 --v~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l 265 (327)
T 3uc1_A 189 --VQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYA 265 (327)
T ss_dssp --EESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred --eeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEE
Confidence 0000111 12456666666666789999999999988764221 111 22221344555544444456666
Q ss_pred EeCCCeEEEEECCC
Q 008939 359 GGEDDLVQVWSMED 372 (548)
Q Consensus 359 gs~dg~I~vwd~~~ 372 (548)
.+.+|.+..++..+
T Consensus 266 ~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 266 VTSGGGVIRTAARQ 279 (327)
T ss_dssp EEGGGCEEEEEGGG
T ss_pred EcCCCeEEEEehhh
Confidence 77778777776643
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.37 E-value=3.2e+02 Score=30.80 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=31.3
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec
Q 008939 343 ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 343 ~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~ 379 (548)
.+.+++..++..++++-+.|+.+||||+.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3456667778889999999999999999999988764
No 360
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=47.43 E-value=2.2e+02 Score=28.15 Aligned_cols=177 Identities=8% Similarity=0.117 Sum_probs=85.3
Q ss_pred eeEEeCCCCCEEEEecCCeEEEEEccCCCC---CCeEEEecCCC----Cc-eEEEecCCCC-------CCceEEEEEcCC
Q 008939 134 TNTNFDGKGTYIIFNVGDAIFISDLNSQDK---DPIKSIHFSNS----NP-VCHAFDQDAK-------DGHDLLIGLNSG 198 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~---~~i~~~~~~~~----~~-~~~~~~p~~~-------~~~~l~~g~~dg 198 (548)
....++ +..+......+.++||.+..... .+.+.+...+. .. .+..+.|... +...++ ...+|
T Consensus 41 ~sg~i~-~~GyAlvv~~~~l~VW~y~~~~~~~~~~c~~lpLp~sd~~~~~~lvsi~~~~~~~~~~s~~~pGlli-VsptG 118 (450)
T 1xks_A 41 LTINID-EGGWACLVCKEKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMV-ATREG 118 (450)
T ss_dssp EEEEEC-TTSEEEEEETTEEEEEECCSSCCGGGCCEEEEECCCCSSCCCGGGEEEEECC-------CTTEEEEE-ECTTC
T ss_pred eEEEEC-CCcEEEEEeCCeEEEEeecCCCCCCcccceeccCCccccccCCcEEEEEcCCCccccccCCCceEEE-EcCCc
Confidence 345677 66777778889999999986421 12223333322 11 1222323321 223444 44499
Q ss_pred cEEEEEeeecccccccceeeeeeeccCCcccC-cceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNN-SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
.|+.|+--.+ ..+-+..... ... ..|+.+.-.... -++.+..-|++....++ ++.......+....
T Consensus 119 ~VryWesIs~---~~~~~ei~~~------L~~~E~vt~l~n~epa--GfIlaTStgrl~~lsir--Gkp~l~~~~l~~~~ 185 (450)
T 1xks_A 119 SIRYWPSLAG---EDTYTEAFVD------SGGDKTYSFLTAVQGG--SFILSSSGSQLIRLIPE--SSGKIHQHILPQGQ 185 (450)
T ss_dssp EEEEESCTTC---TTCCEEEECC----------CCEEEEEEETTT--EEEEEETTCCEEEEEEC--TTSCEEEEECTTCC
T ss_pred cEEEccccCC---CCceEEEEec------CCCCceEEEEeecCCc--eEEEEeccceEEEEEec--CCceEEEEEecCCC
Confidence 9999974332 1111111111 122 556665444332 35666667888888886 54444444443332
Q ss_pred eeeeecCCCCCCCCeeEeee-----cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q 008939 278 QFSVAHPRYSKSNPIARWHI-----CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~ 331 (548)
.+.-... +.+..+.+ +.-...++.+...++.+++.+. +.+.+|++..+
T Consensus 186 G~l~gi~-----~~~sSl~G~~s~~~~ia~v~~~~~~g~r~v~ilT~-~~lq~W~l~~~ 238 (450)
T 1xks_A 186 GMLSGIG-----RKVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTS-SNISKWELDDS 238 (450)
T ss_dssp CC-----------------------CCCCEEEEEEETTTTEEEEEES-SEEEEEEECSS
T ss_pred ccccccc-----ccccccccccCCCcceEEEEeccCCCcEEEEEEcC-CceEEEEecCC
Confidence 2211100 00110000 1111233455566677777766 45999999544
No 361
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=47.23 E-value=87 Score=32.17 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=43.3
Q ss_pred CCeEEEEECCCCCEEEEEEC------------CCeEEEEeCCCCeEEEeeeec-CCceEEEEEccCCCEEEEEe
Q 008939 300 GSINSIAFSTDGTYLATVGR------------DGYLRVFDYSKEQLICGGKSY-YGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~------------dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~sgs 360 (548)
.....|.|+++|.+.+.... ...|..++..++++...+... ...++.++|+||++.|++.-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45778999999987663321 125677777778766555432 35689999999999887764
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=47.19 E-value=1.9e+02 Score=27.22 Aligned_cols=198 Identities=10% Similarity=0.053 Sum_probs=106.0
Q ss_pred ceEEEEEcCCcEEEEEeeeccccc--ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 008939 189 HDLLIGLNSGDVYSVSLRQQLQDV--GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 266 (548)
Q Consensus 189 ~~l~~g~~dg~I~iwdl~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~ 266 (548)
..+++-+.+|.|+--.++....+. ++-.. ...+ -..+.+..+......+ .|+.-+..|.++-.....-...
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~-~~~~-----ke~D~~~~~~~~~t~d-~ll~fT~~Gr~y~~~~~~lp~~ 76 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQ-GAGL-----KQDDIVAHFFVCSTHD-LILFFTTQGRVYRAKAYDLPEA 76 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC---------CCC-----CGGGCEEEEEEEETTS-EEEEEETTSEEEEEEGGGSCBC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCcc-cccc-----CCCCEEEEEEEeCCCC-EEEEEeCCCeEEEEEHHHCcCC
Confidence 367888999999877765421110 00010 0000 1244555555555555 6666677788876665321100
Q ss_pred CCCcccccccceeeeecCCCCCCCCee---EeeecCCCeEEE-EECC--CCCEEEEEECCCeEEEEeCCC-------CeE
Q 008939 267 DSSFPVIKDQTQFSVAHPRYSKSNPIA---RWHICQGSINSI-AFST--DGTYLATVGRDGYLRVFDYSK-------EQL 333 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~-~~sp--~g~~l~s~~~dg~v~vwd~~~-------~~~ 333 (548)
... .. ..++. .+.. ...|..+ .+.. +..+++.++.+|.++...+.. +..
T Consensus 77 ~r~----~~-------------G~~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~ 138 (327)
T 3uc1_A 77 SRT----AR-------------GQHVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIV 138 (327)
T ss_dssp CSS----SC-------------CEEHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEE
T ss_pred Ccc----CC-------------CEEHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceE
Confidence 000 00 00000 0011 1334444 3332 577999999999999988753 222
Q ss_pred EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC--Cc---------eeEEeccCCCCCeEEEEEecCCCCCCCCC
Q 008939 334 ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME--DR---------KVVAWGEGHNSWVSGVAFDSYWSQPNSDG 402 (548)
Q Consensus 334 ~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~--~~---------~~~~~~~~h~~~V~~v~~~p~~~~~~~dg 402 (548)
...++. .+.+..+........|+..+..|.+..+... .- .....+. ....|.++...+ ++
T Consensus 139 ~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~-------~~ 209 (327)
T 3uc1_A 139 AVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVR-------EG 209 (327)
T ss_dssp SCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECC-------TT
T ss_pred EEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEEC-------CC
Confidence 223333 3455555555555678888899998888776 31 1222233 344566655543 33
Q ss_pred CccceeEEEEEEeCCCeEEEEECC
Q 008939 403 TAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
..++..+..|.++.-.+.
T Consensus 210 ------~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 210 ------TYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp ------CEEEEEETTSEEEEEEGG
T ss_pred ------CEEEEEeCCCcEEEEEHH
Confidence 367788888888877654
No 363
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=47.11 E-value=25 Score=37.13 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=25.6
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.++++-+.|.++|+||+++++++.....
T Consensus 232 ~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 232 RYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4899999999999999999999988765
No 364
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=45.32 E-value=73 Score=32.94 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=41.6
Q ss_pred CeEEEEECCCCCEEEEEECC------------CeEEEEeCCCCeEEEeeeec-CCceEEEEEccCCCEEEEE
Q 008939 301 SINSIAFSTDGTYLATVGRD------------GYLRVFDYSKEQLICGGKSY-YGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~d------------g~v~vwd~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~sg 359 (548)
..-.|+|+|.|.+++.-..+ ..+.+.+..++++..-+... ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45679999999866554322 24666677777766555443 4579999999999988775
No 365
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=41.73 E-value=2e+02 Score=26.11 Aligned_cols=167 Identities=11% Similarity=0.067 Sum_probs=85.8
Q ss_pred CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccc
Q 008939 197 SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQ 276 (548)
Q Consensus 197 dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 276 (548)
||.|+.|-....- +.+.+. .....|..|+..... .++. . ||.|+.|-....++.-.....
T Consensus 41 ~G~v~~wG~n~~G-qlg~p~-----------~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~~Gqlg~P~~~---- 100 (282)
T 3qhy_B 41 GGKVLGWGANLNG-QLTMPA-----------ATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGNEDGQTTVPAEA---- 100 (282)
T ss_dssp TTEEEEEECCSSS-TTSCCG-----------GGGSCCCEEEECSSE--EEEE-E-TTEEEEEECCTTSTTCCCGGG----
T ss_pred CCEEEEEeCCCCC-CCCCCc-----------cCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCCCCCCCCCCccc----
Confidence 9999999765421 111110 023456677665433 3444 4 999999987765543211000
Q ss_pred ceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEE
Q 008939 277 TQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI 356 (548)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l 356 (548)
...|..++...+ +.+... ||.|..|-....-.+.........|..++...+. .+
T Consensus 101 ----------------------~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~-~~ 154 (282)
T 3qhy_B 101 ----------------------RSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-AL 154 (282)
T ss_dssp ----------------------SSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EE
T ss_pred ----------------------CCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE-EE
Confidence 134666665443 333344 8999999765321111111122346666554332 22
Q ss_pred EEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 357 ~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+ -. |+.|..|-......+..-..-...|..|+.-. + ..++. .|+.|..|=...
T Consensus 155 ~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~-------~-------hs~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 155 A-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGI-------F-------HSLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp E-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS-------S-------EEEEE--ETTEEEEEECCT
T ss_pred E-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecC-------C-------EEEEE--ECCeEEEEECCC
Confidence 2 23 68888886654221111111134577776643 1 23333 589999996543
No 366
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=41.22 E-value=2.4e+02 Score=26.82 Aligned_cols=67 Identities=7% Similarity=-0.201 Sum_probs=34.5
Q ss_pred CeEEEEECC-C-CCEEEEEECCCeEEEEeCC--CCeEEEeee----------------ecCCceEEEEEccC-CCEEEEE
Q 008939 301 SINSIAFST-D-GTYLATVGRDGYLRVFDYS--KEQLICGGK----------------SYYGALLCCAWSMD-GKYILTG 359 (548)
Q Consensus 301 ~v~~~~~sp-~-g~~l~s~~~dg~v~vwd~~--~~~~~~~~~----------------~~~~~v~~l~~spd-g~~l~sg 359 (548)
.|.++++.| + ...|..+...+-|...+=. +.+.+.... .....+.+|.+.|. ...|+.+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg 195 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIG 195 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEE
Confidence 577899987 3 4556666556655544321 112221110 01235788999883 3445555
Q ss_pred eCCCeEEE
Q 008939 360 GEDDLVQV 367 (548)
Q Consensus 360 s~dg~I~v 367 (548)
..++.|..
T Consensus 196 ~~~ggl~~ 203 (394)
T 3b7f_A 196 MSSGGVFE 203 (394)
T ss_dssp EETBEEEE
T ss_pred ECCCCEEE
Confidence 44444433
No 367
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=39.73 E-value=2.4e+02 Score=26.37 Aligned_cols=159 Identities=11% Similarity=0.015 Sum_probs=85.7
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
...+++.+.+|.|+--.+...... ..... .+ -..+.+..+......+ .|+..+..|.++-+....-....
T Consensus 5 e~~~v~lT~~G~IKr~~~~~~~~~-~~~~~---~l-----ke~D~l~~~~~~~t~d-~ll~fT~~Gr~~~~~~~elp~~~ 74 (323)
T 1wp5_A 5 EDVIVTVTKDGYVKRTSLRSYAAS-NGQDF---AM-----KDTDRLLAMLEMNTKD-VLLLFTNKGNYLYCPVHELPDIR 74 (323)
T ss_dssp CEEEEEEETTCEEEEEEHHHHHHT-TTCCC---CC-----CTTCCEEEEEEEETTS-EEEEEETTSEEEEEEGGGSCBCC
T ss_pred CcEEEEEeCCCEEEEeEHHHhhhc-Ccccc---cc-----CCCCEEEEEEEECCCC-EEEEEECCCEEEEEEHHHCcCCC
Confidence 456888999999998776542111 11100 00 1345555555555555 67777788988877664311100
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE-EECC--CCCEEEEEECCCeEEEEeCCC--------CeEEEe
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI-AFST--DGTYLATVGRDGYLRVFDYSK--------EQLICG 336 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~sp--~g~~l~s~~~dg~v~vwd~~~--------~~~~~~ 336 (548)
..- .+.... +.+ .+.. ...|.++ .... +..+|+.++.+|.++...+.. +.....
T Consensus 75 r~a----~G~~i~---------~~i-~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~ 139 (323)
T 1wp5_A 75 WKD----LGQHIA---------NII-PIDR-DEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGIN 139 (323)
T ss_dssp TTS----CCEEGG---------GTS-CCCT-TCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSC
T ss_pred CCC----CCcChh---------hcc-CCCC-CCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEE
Confidence 000 000000 000 0110 1334443 3332 356899999999999988742 222223
Q ss_pred eeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008939 337 GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 337 ~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~ 372 (548)
+... +.+..+........|+..+.+|.+..++..+
T Consensus 140 l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~e 174 (323)
T 1wp5_A 140 LKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESE 174 (323)
T ss_dssp CCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGG
T ss_pred eCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHH
Confidence 3322 5565555555556788888999988887753
No 368
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=38.27 E-value=2.4e+02 Score=26.03 Aligned_cols=203 Identities=9% Similarity=-0.031 Sum_probs=102.0
Q ss_pred CceEEEEEcCCcEEEEEeeeccccc-ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDV-GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 266 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~ 266 (548)
...+++.+.+|.|+--.+....... +..-.....+ -..+.+..+......+ .|+..+..|.++-+....-...
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~-----ke~D~l~~~~~~~~~~-~ll~fT~~G~~~~~~~~elp~~ 76 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARI-----KEEDFIDRLLVANTHD-HILCFSSRGRVYSMKVYQLPEA 76 (307)
T ss_dssp CEEEEEEETTSEEEEEECC-------------------------CCEEEEEEEETTC-EEEEEETTSEEEEEEGGGSCCC
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeee-----CCCCEEEEEEEECCCC-EEEEEECCCEEEEEEhhHCcCC
Confidence 4468889999999877765421110 0000000000 0234555555555555 6777778898877766431111
Q ss_pred CCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE-C--CCCCEEEEEECCCeEEEEeCCC-------CeEEEe
Q 008939 267 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF-S--TDGTYLATVGRDGYLRVFDYSK-------EQLICG 336 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s--p~g~~l~s~~~dg~v~vwd~~~-------~~~~~~ 336 (548)
...- .+.... +.+ .+. ....|.++.. . .+..+++..+.+|.++...+.. +.....
T Consensus 77 ~~~a----~G~~i~---------~~l-~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~ 141 (307)
T 1zi0_A 77 TRGA----RGRPIV---------NLL-PLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIK 141 (307)
T ss_dssp CSSS----CCEEGG---------GTS-CCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSC
T ss_pred CCCC----CCeEhh---------hcc-CCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEE
Confidence 0000 000000 000 011 1134544432 2 3456889999999999987642 222223
Q ss_pred eeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc---------eeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 337 GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR---------KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 337 ~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~---------~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
+..+ +.+..+....+...++..+.+|.+..++..+- .....+. ....|.++...+ ++
T Consensus 142 l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~-------~~----- 207 (307)
T 1zi0_A 142 LVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPR-------GD----- 207 (307)
T ss_dssp CCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCC-------SS-----
T ss_pred ECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEec-------CC-----
Confidence 3333 55655555555567788888998888876431 1112232 234555554332 22
Q ss_pred eEEEEEEeCCCeEEEEECC
Q 008939 408 MYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~ 426 (548)
..++..+..|.++-.++.
T Consensus 208 -~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 208 -GAILTATQNGYGKRTAVA 225 (307)
T ss_dssp -CEEEEEETTSEEEEECGG
T ss_pred -CEEEEEEcCCceEEEEHH
Confidence 256777777887776653
No 369
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=37.30 E-value=4e+02 Score=28.16 Aligned_cols=55 Identities=11% Similarity=0.087 Sum_probs=34.5
Q ss_pred CCCeEEEEECCCce-------eEEe-cc-CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC--eEEEEECCCCe
Q 008939 361 EDDLVQVWSMEDRK-------VVAW-GE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT--RLLLWDLEMDE 429 (548)
Q Consensus 361 ~dg~I~vwd~~~~~-------~~~~-~~-~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg--~i~lwd~~~~~ 429 (548)
..+.|.+.|+.+.. .... +. .....+..+.+.. +. ++++...++ .|.++|+.++.
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~-------l~~~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTK-------DR-------VFLATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECS-------SC-------EEEEEEETTEEEEEEECEETTE
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEEC-------CE-------EEEEEEECCEEEEEEEECCCCc
Confidence 46678899987642 1222 22 2344677888875 43 677777776 46778877664
No 370
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=31.80 E-value=3.5e+02 Score=25.96 Aligned_cols=202 Identities=11% Similarity=0.036 Sum_probs=107.2
Q ss_pred CCceeEEeCCCCCEEEEecC---------------C-eEEEEEccCCCCCCeEEEecCC------CCceEEEec---CC-
Q 008939 131 TSMTNTNFDGKGTYIIFNVG---------------D-AIFISDLNSQDKDPIKSIHFSN------SNPVCHAFD---QD- 184 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~---------------d-~v~vwd~~~~~~~~i~~~~~~~------~~~~~~~~~---p~- 184 (548)
-+|..+..++++++-+.-.+ . .|.+||+.+...+.++.+.+.. .....++++ |.
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 35667788888877665322 1 6889999985214888888743 245677777 22
Q ss_pred CCCCceEEEEEc-CCcEEEEEeeecccccccceeeeeeeccC--------Ccc--cCcceEEEEEecC----CCcEEEEE
Q 008939 185 AKDGHDLLIGLN-SGDVYSVSLRQQLQDVGKKLVGAHHYNKD--------GSV--NNSRCTSVTWVPG----GDGAFVVG 249 (548)
Q Consensus 185 ~~~~~~l~~g~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~v~~l~~~p~----~~~~l~s~ 249 (548)
..+..++++... .+-|.++|+.+.. ..++.. ..+.++ +.. -...+..|+.+|+ ++ .|.-.
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~---swRv~~-~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~-~LYf~ 241 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQD---SWNVTH-PTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNR-PAYYL 241 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTE---EEEEEC-GGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCC-EEEEE
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCc---EEEEcc-CCCccccCcceEECCEEeEeccCceEEEecCCcCCCCe-EEEEE
Confidence 112345555553 5669999988621 111111 011111 110 1357889999997 55 44444
Q ss_pred eC-CCcEEEEEcCC--CCCCCCCcccccccceeeeecCCCCCCCCeeEeeec--CCCeEEEEEC-CCCCEEEEEECCCeE
Q 008939 250 HA-DGNLYVYEKSK--DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC--QGSINSIAFS-TDGTYLATVGRDGYL 323 (548)
Q Consensus 250 ~~-dg~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s-p~g~~l~s~~~dg~v 323 (548)
.. ...++--..+. +... ...++.+-.. ...-..+++. .+|.++++--....|
T Consensus 242 plss~~ly~V~T~~L~~~~~----------------------~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI 299 (381)
T 3q6k_A 242 AGSAIKVYSVNTKELKQKGG----------------------KLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQV 299 (381)
T ss_dssp ESSCSEEEEEEHHHHSSTTC----------------------CCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEE
T ss_pred ECCCCcEEEEEHHHhhCcch----------------------hhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeE
Confidence 33 33344333210 0110 1112222211 1334456776 578777777788899
Q ss_pred EEEeCCC-C---eEEEeee--ecCCceEEEEEccCCCEEEEE
Q 008939 324 RVFDYSK-E---QLICGGK--SYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 324 ~vwd~~~-~---~~~~~~~--~~~~~v~~l~~spdg~~l~sg 359 (548)
..|+..+ . +....+. ..-.....+.+.++|.+.+..
T Consensus 300 ~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 300 SCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 9999875 1 1111211 122345666666666544444
No 371
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=30.62 E-value=3.6e+02 Score=25.68 Aligned_cols=256 Identities=15% Similarity=0.124 Sum_probs=123.5
Q ss_pred ceEEEEEcCCcEEEEEeeeccccccc---ceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 008939 189 HDLLIGLNSGDVYSVSLRQQLQDVGK---KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 265 (548)
Q Consensus 189 ~~l~~g~~dg~I~iwdl~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~ 265 (548)
...++-..+|.|+.|-....-+ .+. ......... .......+..++.+.... ..+.-..||.|+.|-....++
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~Gq-LG~g~~~~~~~p~~v--~~~~~~~~~~v~i~~G~~-h~~al~~~G~v~~wG~n~~Gq 138 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGR-LGIGGTESVSTPTLL--ESIQHVFIKKVAVNSGGK-HCLALSSEGEVYSWGEAEDGK 138 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGT-TSSSSSCCEEEEEEC--GGGTTSCEEEEEECTTCS-EEEEEETTSCEEEEECCGGGT
T ss_pred CeEEEEcCCCcEEEEECCCCCC-CCCCCcCCccCCEEc--ccccCCceeEEEECcCCC-eEEEEcCCCCEEEEeCCCCCc
Confidence 3556668899999997543211 110 000000000 011233455566666665 556667899999998765443
Q ss_pred CCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC-Ce---------E-E
Q 008939 266 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK-EQ---------L-I 334 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-~~---------~-~ 334 (548)
.-....... . .|...-......|..++.. ..+.+....||.|..|-... ++ . .
T Consensus 139 LG~g~~~~~-----~---------~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p 202 (389)
T 3kci_A 139 LGHGNRSPC-----D---------RPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKP 202 (389)
T ss_dssp TCSSSCCCE-----E---------EEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEE
T ss_pred CCCCCCccC-----c---------CCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccc
Confidence 221110000 0 0000000011245555543 34555566788888886532 11 0 1
Q ss_pred Eeeee-cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc-e----------eEEeccC-CCCCeEEEEEecCCCCCCCC
Q 008939 335 CGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-K----------VVAWGEG-HNSWVSGVAFDSYWSQPNSD 401 (548)
Q Consensus 335 ~~~~~-~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~-~----------~~~~~~~-h~~~V~~v~~~p~~~~~~~d 401 (548)
..+.. ....|..++........+.-..|+.|..|-.... + ....+.. ....|..|+.-.
T Consensus 203 ~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~-------- 274 (389)
T 3kci_A 203 KLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS-------- 274 (389)
T ss_dssp EECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET--------
T ss_pred eEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC--------
Confidence 11111 1234666665443345566678899999965321 1 1111111 223466666543
Q ss_pred CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEe
Q 008939 402 GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH 481 (548)
Q Consensus 402 g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~ 481 (548)
...+.-..||.|..|=......+- . +..+. ...|....
T Consensus 275 -------~hs~alt~~G~v~~wG~n~~GqLG---~------------------------g~~~~--------~~~P~~v~ 312 (389)
T 3kci_A 275 -------QFSVALTKSGAVYTWGKGDYHRLG---H------------------------GSDDH--------VRRPRQVQ 312 (389)
T ss_dssp -------TEEEEEETTSCEEEEECCGGGTTC---S------------------------SSCCC--------EEEEEECG
T ss_pred -------CEEEEEeCCCeEEEEeCCCCCCCC---C------------------------CCCcc--------ccCCeEec
Confidence 244555788999999653211100 0 00000 00011110
Q ss_pred ecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCC
Q 008939 482 RVHTEPLSGLIFTQESVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 482 ~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~ 514 (548)
......|..|+......+....||.|..|-...
T Consensus 313 ~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 313 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp GGTTCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred cCCCCCEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence 112345777877777666678999999998654
No 372
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=30.27 E-value=3.8e+02 Score=25.78 Aligned_cols=131 Identities=11% Similarity=0.212 Sum_probs=70.1
Q ss_pred CcceEEEEEe---cC---CCcEEEEEe-CCCcEEEEEcCCCCCCCCCccccccc--ceeeeecCCCCCCCCeeEeeecCC
Q 008939 230 NSRCTSVTWV---PG---GDGAFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQ--TQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 230 ~~~v~~l~~~---p~---~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
...+.++++. |. +..++..+. ..+-|.|+|+.++..-+..-...... ..+.+. .....| ..
T Consensus 151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~-------G~~~~~---~~ 220 (381)
T 3q6k_A 151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYG-------GKEYEF---KA 220 (381)
T ss_dssp GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEET-------TEEEEE---CC
T ss_pred CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEEC-------CEEeEe---cc
Confidence 4567888887 22 122444444 46789999998743221110000000 011110 001112 25
Q ss_pred CeEEEEECCC----CCEEEEEECCCeEEEEeCC-----CCe---EEEeeeecC---CceEEEEEc-cCCCEEEEEeCCCe
Q 008939 301 SINSIAFSTD----GTYLATVGRDGYLRVFDYS-----KEQ---LICGGKSYY---GALLCCAWS-MDGKYILTGGEDDL 364 (548)
Q Consensus 301 ~v~~~~~sp~----g~~l~s~~~dg~v~vwd~~-----~~~---~~~~~~~~~---~~v~~l~~s-pdg~~l~sgs~dg~ 364 (548)
.|..++++|+ ++.|+.....+ -++|.+. ... .+..+ +.. ..-..+++. .+|.++++--+...
T Consensus 221 Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~a 298 (381)
T 3q6k_A 221 GIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQ 298 (381)
T ss_dssp CEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSE
T ss_pred CceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCe
Confidence 7999999997 77887776554 2334332 111 11111 122 233456675 67877888888899
Q ss_pred EEEEECCC
Q 008939 365 VQVWSMED 372 (548)
Q Consensus 365 I~vwd~~~ 372 (548)
|..|+.++
T Consensus 299 I~~w~~~~ 306 (381)
T 3q6k_A 299 VSCWNTQK 306 (381)
T ss_dssp EEEEETTS
T ss_pred EEEEeCCC
Confidence 99999875
No 373
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.61 E-value=6.2e+02 Score=27.75 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=32.6
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec
Q 008939 343 ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 343 ~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~ 379 (548)
.+.+++..++..++++-+.|+.+|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4677888888889999999999999999999988764
No 374
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=23.80 E-value=4.9e+02 Score=24.96 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=22.3
Q ss_pred CeeEEEEeCCeEEEEECCCeEEEEeCCC
Q 008939 487 PLSGLIFTQESVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 487 ~V~~l~fspd~l~t~s~Dg~I~iW~~~~ 514 (548)
.|..|+......+.-..||.|..|-...
T Consensus 347 ~v~~ia~G~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 347 KIVSVGCGEVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCT
T ss_pred CEEEEEcCCCeEEEEcCCCCEEEECCCC
Confidence 6888888877766668999999998554
No 375
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=22.34 E-value=4.6e+02 Score=24.10 Aligned_cols=175 Identities=11% Similarity=0.059 Sum_probs=89.7
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
...+..+..-++..+..+++..+.+|.++...+...... .+.-.....+. ..+.+..+....+.+ .++..+.+
T Consensus 94 ~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~-~r~G~~~i~l~-----~~d~lv~~~~~~~~~-~i~l~T~~ 166 (307)
T 1zi0_A 94 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL-RTAGKVAIKLV-----DGDELIGVDLTSGED-EVMLFSAE 166 (307)
T ss_dssp TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTC-CTTCEESSCCC-----TTCCEEEEEEECTTC-EEEEEETT
T ss_pred CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcc-ccCCeEEEEEC-----CCCEEEEEEEeCCCC-EEEEECCC
Confidence 335555543322223557999999999999887642111 11111111111 135566665555555 67778888
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
|.+..++...-......-. +. ....+. ....|.++....++..|++.+..|.++..++..-.
T Consensus 167 G~~irf~~~~v~~~gr~a~----Gv-------------~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~ 228 (307)
T 1zi0_A 167 GKVVRFKESSVRAMGCNTT----GV-------------RGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYP 228 (307)
T ss_dssp SEEEEEEGGGSCBCCTTCC----CE-------------ECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSC
T ss_pred CcEEEEEHHHcCccCCCCC----Ce-------------EeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhc
Confidence 9988888753111000000 00 000111 12456666555556678899999999988874211
Q ss_pred ---------EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008939 333 ---------LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 333 ---------~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~ 372 (548)
....+....+.+..+....+...|+.-+.+|.+.-+++.+
T Consensus 229 ~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 229 TKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp CCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred cCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 1111222224454444333334455555666665555543
No 376
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=20.48 E-value=7.6e+02 Score=25.94 Aligned_cols=97 Identities=10% Similarity=0.104 Sum_probs=54.4
Q ss_pred CCCeEEEEeCCCCe-------EEEe-ee-ecCCceEEEEEccCCCEEEEEeCCCe--EEEEECCCce-eEEe-ccCC-CC
Q 008939 319 RDGYLRVFDYSKEQ-------LICG-GK-SYYGALLCCAWSMDGKYILTGGEDDL--VQVWSMEDRK-VVAW-GEGH-NS 384 (548)
Q Consensus 319 ~dg~v~vwd~~~~~-------~~~~-~~-~~~~~v~~l~~spdg~~l~sgs~dg~--I~vwd~~~~~-~~~~-~~~h-~~ 384 (548)
..+.|.+.|+.+.. .... +. .....+..+.|..+ .++++...++. |.++|+.+++ .+.. +... ..
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~ 396 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN 396 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe
Confidence 46678888876531 1111 22 22345778888876 56777777764 6777776664 2222 2211 34
Q ss_pred CeEEEEEecCCCCCCCCCCccceeEEEEEEe---CCCeEEEEECCCCe
Q 008939 385 WVSGVAFDSYWSQPNSDGTAETVMYRFGSVG---QDTRLLLWDLEMDE 429 (548)
Q Consensus 385 ~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~---~Dg~i~lwd~~~~~ 429 (548)
.|..+...+ ++. .++++.+ .-..+..+|+. ++
T Consensus 397 ~~~~~~~~~-------~~~-----~~~~~~ss~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 397 AIFGMSSYE-------EEE-----EALITIENSIVPPTIYLWVKT-HE 431 (711)
T ss_dssp CEEEEECCT-------TCS-----CEEEEEECSSSCCEEEEECTT-SC
T ss_pred EEEEEeecC-------cCC-----EEEEEEecCCCCCEEEEEeCC-Cc
Confidence 566666655 541 2444433 34678888887 44
Done!