BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008940
(548 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 2/203 (0%)
Query: 28 SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 87
S+IK V GG+ LV+LL TD++VQ+ AA AL +A DE IV+ + L+
Sbjct: 35 SAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK 93
Query: 88 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 147
+L S DS + EA + N+ K ++ AG ++ ++ LL+S SE Q+EAA L
Sbjct: 94 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153
Query: 148 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGG 206
A+ + IV G V L+++L S D ++++ +A AL +A + I GG
Sbjct: 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGG 213
Query: 207 LVPLLKLLDSKNGSLQHNAAFAL 229
+ L KLL S + +Q A AL
Sbjct: 214 VEVLQKLLTSTDSEVQKEAQRAL 236
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 96/180 (53%), Gaps = 2/180 (1%)
Query: 10 NSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
+ V + AA A+ N+A + +IK V GG+ LV+LL TD++VQ+ AA AL +A
Sbjct: 58 SEVQKEAARALANIASGPDEAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASG 116
Query: 69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
DE IV+ + L+ +L S DS + EA + N+ K ++ AG ++ ++
Sbjct: 117 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV 176
Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
LL+S SE Q+EAA L A+ + IV G V L ++L S D ++++ + AL
Sbjct: 177 KLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 38/234 (16%)
Query: 124 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREM 183
++ ++ LL+S SE+Q+EAA L + A+ + IV G V L+++L S D ++++
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 184 SAFALGRLAQ--DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-VA 240
+A AL +A D +A I GG+ L+KLL S + +Q AA AL +A D +
Sbjct: 64 AARALANIASGPDEAIKA-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122
Query: 241 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA 300
+ GGV+ L+ L+ + VQ+ A
Sbjct: 123 AIVDAGGVE---------------------------------VLVKLLTSTDSEVQKEAA 149
Query: 301 LALAHLCS-PDDQRTIFIDXXXXXXXXXXXXSTNPKQQLDGAVALFKLANKATT 353
ALA++ S PD+ +D ST+ + Q + A AL +A+ T+
Sbjct: 150 RALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS 203
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 366 PQVYLGDQF---VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDI 422
P+ L D+ N+ +D V G+ F AH+ L A S F AMF+ E +
Sbjct: 157 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRV 216
Query: 423 EIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 482
EI ++ EVF+ MM FIYTG +A DLL AAD+Y LE LK +CE + ++S+EN
Sbjct: 217 EINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVEN 276
Query: 483 VSSMYELSEAFHAISLRHTCILYIMEH 509
+ + L++ A L+ + +I H
Sbjct: 277 AAEILILADLHSADQLKTQAVDFINYH 303
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Query: 365 TPQVYLGDQF---VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARD 421
P+ L D+ N+ +D V G+ F AH+ L A S F AMF+ E
Sbjct: 7 VPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNR 66
Query: 422 IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLE 481
+EI ++ EVF+ MM FIYTG +A DLL AAD+Y LE LK +CE + ++S+E
Sbjct: 67 VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVE 126
Query: 482 NVSSMYELSEAFHAISLR 499
N + + L++ A L+
Sbjct: 127 NAAEILILADLHSADQLK 144
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 1/196 (0%)
Query: 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 97
G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 98 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 157
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173
Query: 158 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDS 216
++ GA+ L+++L SP+ Q+ + + +AL +A + Q + G L L +L
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233
Query: 217 KNGSLQHNAAFALYGL 232
+N +Q A AL L
Sbjct: 234 ENEKIQKEAQEALEKL 249
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 105/215 (48%), Gaps = 2/215 (0%)
Query: 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
+P + + L D + Q +A + +E +++ ALP L+ +L S + I E
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 100 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159
A+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKLLDSKN 218
++ GA+ L+++L SP+ Q+ + + +AL +A + Q + G +P L++LL S N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 193
Query: 219 GSLQHNAAFALYGLADNEDNVADFIR-VGGVQKLQ 252
+ A +AL +A + ++ G ++KL+
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 228
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 1/164 (0%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
+++ A A++N+A + V G +P LV+LL + ++ + A AL +A +E
Sbjct: 70 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 72 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
+++ ALP L+ +L S + I EA+ + N+ + V+ AGAL ++ LL
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189
Query: 132 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 175
SS + +EA L A+ ++ K + + GA+ L E LQS
Sbjct: 190 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL-EQLQS 232
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 366 PQVYLGDQ---FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDI 422
P+ L D+ N+ +D V G+ F AH+ L A S F A F+ E +
Sbjct: 17 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRV 76
Query: 423 EIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 482
EI ++ EVF+ FIYTG A DLL AAD+Y LE LK CE + ++S+EN
Sbjct: 77 EINDVEPEVFKEXXCFIYTGKAPNLDKXADDLLAAADKYALERLKVXCEDALCSNLSVEN 136
Query: 483 VSSMYELSEAFHAISLRHTCILYIMEH 509
+ + L++ A L+ + +I H
Sbjct: 137 AAEILILADLHSADQLKTQAVDFINYH 163
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 1/191 (0%)
Query: 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
+P +V+ L D + ++A L +A +E +++ ALP L+ +L S + I E
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 100 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159
A+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK-N 218
++ GA+ L+++L SP+ Q+ + + +AL +A + Q G P L+ L S N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPN 193
Query: 219 GSLQHNAAFAL 229
+Q A AL
Sbjct: 194 EKIQKEAQEAL 204
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 97
G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 98 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 157
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++ K
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 158 VHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRL 191
+ + GA P +E LQ SP+ ++++ + AL ++
Sbjct: 174 QAVKEAGA-EPALEQLQSSPNEKIQKEAQEALEKI 207
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
+++ A A++N+A + V G +P LV+LL + ++ + A AL +A +E
Sbjct: 70 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 72 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
+++ ALP L+ +L S + I EA+ + N+ K+ V AGA +P + L
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA-EPALEQL 188
Query: 132 SSCCSES-QREA 142
S +E Q+EA
Sbjct: 189 QSSPNEKIQKEA 200
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 1/194 (0%)
Query: 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
+P +V+ L D + ++A L +A +E +++ ALP L+ +L S + I E
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 100 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159
A+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDSKN 218
++ GA+ L+++L SP+ Q+ + + +AL +A + Q + G L L +L +N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 219 GSLQHNAAFALYGL 232
+Q A AL L
Sbjct: 194 EKIQKEAQEALEKL 207
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 97
G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 98 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 157
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++ K
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 158 VHIVQRGAVRPLIEMLQS 175
+ + GA+ L E LQS
Sbjct: 174 QAVKEAGALEKL-EQLQS 190
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
+++ A A++N+A + V G +P LV+LL + ++ + A AL +A +E
Sbjct: 70 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 72 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
+++ ALP L+ +L S + I EA+ + N+ K+ V AGAL+ + L
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189
Query: 132 SSCCSESQREA 142
S + Q+EA
Sbjct: 190 SHENEKIQKEA 200
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Query: 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
+P + + L D + Q +A + +E +++ ALP L+ +L S + I E
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 100 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159
A+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDSKN 218
++ GA+ L+++L SP+ Q+ + + +AL +A + Q + G L L +L +N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 219 GSLQHNAAFALYGL 232
+Q A AL L
Sbjct: 194 EKIQKEAQEALEKL 207
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 97
G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 98 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 157
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++ K
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 158 VHIVQRGAVRPLIEMLQS 175
+ + GA+ L E LQS
Sbjct: 174 QAVKEAGALEKL-EQLQS 190
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
+++ A A++N+A + V G +P LV+LL + ++ + A AL +A +E
Sbjct: 70 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 72 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
+++ ALP L+ +L S + I EA+ + N+ K+ V AGAL+ + L
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189
Query: 132 SSCCSESQREA 142
S + Q+EA
Sbjct: 190 SHENEKIQKEA 200
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
+R ++NL + +E +P LV LL D +V + A+ L +E
Sbjct: 183 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 242
Query: 73 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+V+ +P L+ +L + + I A+ IGN+V + ++V+ AGAL LL+
Sbjct: 243 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 302
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
+ + Q+EA + A D +V G V L+ +L D + ++ +A+A+
Sbjct: 303 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 362
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
G + Q ++ + H G + PL+ LL +K+
Sbjct: 363 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 390
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 52 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 111
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 112 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 171
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
PD +S A G L + + N P L++LL + +
Sbjct: 172 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 226
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
++ +A+ L D + + + GV
Sbjct: 227 DSCWAISYLTDGPNERIEMVVKKGV 251
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 38 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 76 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 135
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 136 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 171
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
+R ++NL + +E +P LV LL D +V + A+ L +E
Sbjct: 157 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 216
Query: 73 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+V+ +P L+ +L + + I A+ IGN+V + ++V+ AGAL LL+
Sbjct: 217 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 276
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
+ + Q+EA + A D +V G V L+ +L D + ++ +A+A+
Sbjct: 277 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 336
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
G + Q ++ + H G + PL+ LL +K+
Sbjct: 337 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 364
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 26 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 85
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 86 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
PD +S A G L + + N P L++LL + +
Sbjct: 146 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 200
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
++ +A+ L D + + + GV
Sbjct: 201 DSCWAISYLTDGPNERIEMVVKKGV 225
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 38 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 50 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 109
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 110 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
+R ++NL + +E +P LV LL D +V + A+ L +E
Sbjct: 226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 285
Query: 73 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+V+ +P L+ +L + + I A+ IGN+V + ++V+ AGAL LL+
Sbjct: 286 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 345
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
+ + Q+EA + A D +V G V L+ +L D + ++ +A+A+
Sbjct: 346 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYT 405
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
G + Q ++ + H G + PL+ LL +K+
Sbjct: 406 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 433
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 95 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
PD +S A G L + + N P L++LL + +
Sbjct: 215 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 269
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
++ +A+ L D + + + GV
Sbjct: 270 DSCWAISYLTDGPNERIEMVVKKGV 294
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 38 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 178
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+AV +GN+ + + V+ GA+ P++ LL+
Sbjct: 179 SEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
+R ++NL + +E +P LV LL D +V + A+ L +E
Sbjct: 152 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 211
Query: 73 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+V+ +P L+ +L + + I A+ IGN+V + ++V+ AGAL LL+
Sbjct: 212 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 271
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
+ + Q+EA + A D +V G V L+ +L D + ++ +A+A+
Sbjct: 272 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 331
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
G + Q ++ + H G + PL+ LL +K+
Sbjct: 332 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 359
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 21 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 80
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 81 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
PD +S A G L + + N P L++LL + +
Sbjct: 141 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 195
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
++ +A+ L D + + + GV
Sbjct: 196 DSCWAISYLTDGPNERIEMVVKKGV 220
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 38 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 45 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 104
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 105 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
+R ++NL + +E +P LV LL D +V + A+ L +E
Sbjct: 156 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 215
Query: 73 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+V+ +P L+ +L + + I A+ IGN+V + ++V+ AGAL LL+
Sbjct: 216 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 275
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
+ + Q+EA + A D +V G V L+ +L D + ++ +A+A+
Sbjct: 276 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 335
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
G + Q ++ + H G + PL+ LL +K+
Sbjct: 336 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 363
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 25 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 84
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 85 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
PD +S A G L + + N P L++LL + +
Sbjct: 145 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 199
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
++ +A+ L D + + + GV
Sbjct: 200 DSCWAISYLTDGPNERIEMVVKKGV 224
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 38 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 49 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 108
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 109 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
+R ++NL + +E +P LV LL D +V + A+ L +E
Sbjct: 152 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 211
Query: 73 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+V+ +P L+ +L + + I A+ IGN+V + ++V+ AGAL LL+
Sbjct: 212 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 271
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
+ + Q+EA + A D +V G V L+ +L D + ++ +A+A+
Sbjct: 272 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 331
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
G + Q ++ + H G + PL+ LL +K+
Sbjct: 332 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 359
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 21 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 80
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 81 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
PD +S A G L + + N P L++LL + +
Sbjct: 141 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 195
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
++ +A+ L D + + + GV
Sbjct: 196 DSCWAISYLTDGPNERIEMVVKKGV 220
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 38 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 45 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 104
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 105 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
+R ++NL + +E +P LV LL D +V + A+ L +E
Sbjct: 156 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 215
Query: 73 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+V+ +P L+ +L + + I A+ IGN+V + ++V+ AGAL LL+
Sbjct: 216 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 275
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
+ + Q+EA + A D +V G V L+ +L D + ++ +A+A+
Sbjct: 276 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 335
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
G + Q ++ + H G + PL+ LL +K+
Sbjct: 336 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 363
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 25 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 84
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 85 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
PD +S A G L + + N P L++LL + +
Sbjct: 145 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 199
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
++ +A+ L D + + + GV
Sbjct: 200 DSCWAISYLTDGPNERIEMVVKKGV 224
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 38 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 49 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 108
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 109 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
+R ++NL + +E +P LV LL D +V + A+ L +E
Sbjct: 193 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 252
Query: 73 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+V+ +P L+ +L + + I A+ IGN+V + ++V+ AGAL LL+
Sbjct: 253 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 312
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
+ + Q+EA + A D +V G V L+ +L D + ++ +A+A+
Sbjct: 313 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 372
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
G + Q ++ + H G + PL+ LL +K+
Sbjct: 373 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 400
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 62 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 121
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 122 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 181
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
PD +S A G L + + N P L++LL + +
Sbjct: 182 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 236
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
++ +A+ L D + + + GV
Sbjct: 237 DSCWAISYLTDGPNERIEMVVKKGV 261
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 38 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 86 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 145
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 146 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 181
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
+R ++NL + +E +P LV LL D +V + A+ L +E
Sbjct: 157 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 216
Query: 73 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+V+ +P L+ +L + + I A+ IGN+V + ++V+ AGAL LL+
Sbjct: 217 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 276
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
+ + Q+EA + A D +V G V L+ +L D + ++ +A+A+
Sbjct: 277 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 336
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
G + Q ++ + H G + PL+ LL +K+
Sbjct: 337 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 364
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 26 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 85
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 86 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
PD +S A G L + + N P L++LL + +
Sbjct: 146 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 200
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
++ +A+ L D + + + GV
Sbjct: 201 DSCWAISYLTDGPNERIEMVVKKGV 225
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 38 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 50 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 109
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 110 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
+R ++NL + +E +P LV LL D +V + A+ L +E
Sbjct: 157 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 216
Query: 73 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+V+ +P L+ +L + + I A+ IGN+V + ++V+ AGAL LL+
Sbjct: 217 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 276
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
+ + Q+EA + A D +V G V L+ +L D + ++ +A+A+
Sbjct: 277 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 336
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
G + Q ++ + H G + PL+ LL +K+
Sbjct: 337 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 364
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 26 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 85
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 86 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
PD +S A G L + + N P L++LL + +
Sbjct: 146 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 200
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
++ +A+ L D + + + GV
Sbjct: 201 DSCWAISYLTDGPNERIEMVVKKGV 225
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 38 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 50 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 109
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 110 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
+R ++NL + +E +P LV LL D +V + A+ L +E
Sbjct: 191 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 250
Query: 73 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+V+ +P L+ +L + + I A+ IGN+V + ++V+ AGAL LL+
Sbjct: 251 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 310
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
+ + Q+EA + A D +V G V L+ +L D + ++ +A+A+
Sbjct: 311 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 370
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
G + Q ++ + H G + PL+ LL +K+
Sbjct: 371 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 398
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 60 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 119
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 120 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 179
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
PD +S A G L + + N P L++LL + +
Sbjct: 180 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 234
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
++ +A+ L D + + + GV
Sbjct: 235 DSCWAISYLTDGPNERIEMVVKKGV 259
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 38 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 84 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 143
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 144 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 179
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
+R ++NL + +E +P LV LL D +V + A+ L +E
Sbjct: 207 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 266
Query: 73 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+V+ +P L+ +L + + I A+ IGN+V + ++V+ AGAL LL+
Sbjct: 267 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 326
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
+ + Q+EA + A D +V G V L+ +L D + ++ +A+A+
Sbjct: 327 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
G + Q ++ + H G + PL+ LL +K+
Sbjct: 387 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 414
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/275 (19%), Positives = 110/275 (40%), Gaps = 27/275 (9%)
Query: 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 76 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
PD +S A G L + + N P L++LL + +
Sbjct: 196 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 224 NAAFALYGLADNEDN----------VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 273
++ +A+ L D + V +++ G +L ++A + V T ++ +
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310
Query: 274 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 308
+ I L L+ + +Q+ ++++ +
Sbjct: 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 38 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 159
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
+R ++NL + +E +P LV LL D +V + A+ L +E
Sbjct: 163 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 222
Query: 73 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+V+ +P L+ +L + + I A+ IGN+V + ++V+ AGAL LL+
Sbjct: 223 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 282
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
+ + Q+EA + A D +V G V L+ +L D + ++ +A+A+
Sbjct: 283 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 342
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
G + Q ++ + H G + PL+ LL +K+
Sbjct: 343 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 370
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 32 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 91
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 151
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
PD +S A G L + + N P L++LL + +
Sbjct: 152 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 206
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
++ +A+ L D + + + GV
Sbjct: 207 DSCWAISYLTDGPNERIEMVVKKGV 231
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 38 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 115
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 116 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 151
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
+R ++NL + +E +P LV LL D +V + A+ L +E
Sbjct: 207 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 266
Query: 73 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+V+ +P L+ +L + + I A+ IGN+V + ++V+ AGAL LL+
Sbjct: 267 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 326
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
+ + Q+EA + A D +V G V L+ +L D + ++ +A+A+
Sbjct: 327 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
G + Q ++ + H G + PL+ LL +K+
Sbjct: 387 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 414
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/275 (19%), Positives = 110/275 (40%), Gaps = 27/275 (9%)
Query: 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 76 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
PD +S A G L + + N P L++LL + +
Sbjct: 196 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 224 NAAFALYGLADNEDN----------VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 273
++ +A+ L D + V +++ G +L ++A + V T ++ +
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310
Query: 274 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 308
+ I L L+ + +Q+ ++++ +
Sbjct: 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 38 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 159
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
+R ++NL + +E +P LV LL D +V + A+ L +E
Sbjct: 207 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 266
Query: 73 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+V+ +P L+ +L + + I A+ IGN+V + ++V+ AGAL LL+
Sbjct: 267 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 326
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
+ + Q+EA + A D +V G V L+ +L D + ++ +A+A+
Sbjct: 327 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
G + Q ++ + H G + PL+ LL +K+
Sbjct: 387 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 414
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 76 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
PD +S A G L + + N P L++LL + +
Sbjct: 196 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
++ +A+ L D + + + GV
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGV 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 38 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 159
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 10/212 (4%)
Query: 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
+R ++NL + +E +P LV LL D +V A+ L +E
Sbjct: 158 LRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNER 217
Query: 73 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
+V+ +P L+ +L + + I A+ IGN+V + + V+ AGAL LL+
Sbjct: 218 IGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLT 277
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
+ + Q+EA + A D +V G V L+ +L D + ++ + +A+
Sbjct: 278 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYT 337
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
G + Q ++ + H G + PL+ LL +K+
Sbjct: 338 SGGTVEQIVY----LVHCGIIEPLMNLLTAKD 365
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 18/209 (8%)
Query: 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNI 114
+A A + L+ + + I+ +P + L R++ S I +E+ + N+ +
Sbjct: 27 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQ 86
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
K V+ GA+ I LL+S + +A LG A S + +++ GAV PL+ +L
Sbjct: 87 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLA 146
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
PD MS+ A G L + + N P L++LL + +
Sbjct: 147 VPD-----MSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLA 201
Query: 224 NAAFALYGLADN-EDNVADFIRVGGVQKL 251
+ +A+ L D + + ++ G V +L
Sbjct: 202 DTCWAISYLTDGPNERIGMVVKTGVVPQL 230
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 7/184 (3%)
Query: 38 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 51 GLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 110
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-----SSCCSESQREAALLLGQFAA 151
+AV +GN+ + V+ GA+ P++ LL SS R L
Sbjct: 111 SEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCR 170
Query: 152 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-L 210
+ + L+ +L D ++ + +A+ L + + G+ G+VP L
Sbjct: 171 NKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQL 230
Query: 211 LKLL 214
+KLL
Sbjct: 231 VKLL 234
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 107/291 (36%), Gaps = 54/291 (18%)
Query: 15 RAADAITNLAHENSSIKTRVRMEGG-IPPLVELLE-----------------------FT 50
+A A+TN+A S +T+ ++GG IP + LL F
Sbjct: 71 ESAWALTNIASGTSE-QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFR 129
Query: 51 DTKVQRAAA-----------------GALRTLAFKNDE---NKNQIVECNA----LPTLI 86
D ++ A G LR L + NKN +A LPTL+
Sbjct: 130 DLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLV 189
Query: 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 146
+L +D + + I L V+ G + ++ LL + A +
Sbjct: 190 RLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAI 249
Query: 147 GQF-AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 205
G TD +V ++ GA+ +L +P +++ + + + + +Q N
Sbjct: 250 GNIVTGTDEQTQV-VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 308
Query: 206 GLVP-LLKLLDSKNGSLQHNAAFAL--YGLADNEDNVADFIRVGGVQKLQD 253
GLVP L+ +L + Q A +A+ Y + + + G ++ L +
Sbjct: 309 GLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMN 359
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
++ A AI N+ V G + LL T +Q+ A + + +
Sbjct: 241 IVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 300
Query: 72 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA---AGALQPVI 128
Q+V +P L+ +L D EAV + N ++S ++++ G ++P++
Sbjct: 301 QIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTN--YTSGGTVEQIVYLVHCGIIEPLM 358
Query: 129 GLLSS 133
LL++
Sbjct: 359 NLLTA 363
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Query: 23 LAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNA 81
L+ E S V G +P V+ L D ++Q AA AL +A EN +++ A
Sbjct: 64 LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 123
Query: 82 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-R 140
+P + +L S + +AV +GN+ SP + VLA GAL P++ L+ S R
Sbjct: 124 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 183
Query: 141 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 200
A L F R A+ L ++ S D ++ + +AL L+ +++
Sbjct: 184 NATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQ 242
Query: 201 IAHNGGLVP-LLKLL 214
G+ P L++LL
Sbjct: 243 AVIEAGVCPRLVELL 257
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 89/172 (51%), Gaps = 4/172 (2%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPP-LVELLEFTDTKVQRAAAGALRTLAFKND 70
V+ A A++ L+ + ++ K + +E G+ P LVELL V A + + +D
Sbjct: 222 VLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 280
Query: 71 ENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 129
I++ ALP L+ L+ ++ +I EA I N+ + + + V+ AG + P++
Sbjct: 281 AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVN 340
Query: 130 LLSSCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQL 180
LL + + ++EAA + + S ++ ++V G ++PL ++L PD+++
Sbjct: 341 LLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRI 392
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 83/178 (46%), Gaps = 3/178 (1%)
Query: 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
+P L L+ D +V A AL L+ ++ ++E P L+ +L ++
Sbjct: 208 LPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIP 267
Query: 100 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAALLLGQFAATDSDCKV 158
A+ +GN+V + ++ AL ++ LL+ +S ++EA + A + D
Sbjct: 268 ALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ 327
Query: 159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGR-LAQDMHNQAG-IAHNGGLVPLLKLL 214
++ G + PL+ +LQ+ + +++ +A+A+ + H+Q + G + PL LL
Sbjct: 328 AVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 385
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 102/255 (40%), Gaps = 13/255 (5%)
Query: 15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 74
AA A+TN+A S V G +P V+LL + V+ A AL +A + + ++
Sbjct: 99 EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRD 158
Query: 75 QIVECNALPTLILMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 133
++ AL L+ L ++ A + N P E AL + L+ S
Sbjct: 159 LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP-ALPALARLIHS 217
Query: 134 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML--QSPDVQLREMSAFALGRL 191
E +A L + +D +++ G L+E+L SP V + +
Sbjct: 218 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 277
Query: 192 AQDMHNQAGIAHNGGLVPLLKLLDSKN--GSLQHNAAFALYGL-ADNEDNVADFIRVGG- 247
D Q I H +P L L ++N S++ A + + + A N+D + I G
Sbjct: 278 GDDAQTQCIIDHQA--LPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII 335
Query: 248 ---VQKLQDGEFIVQ 259
V LQ EF ++
Sbjct: 336 GPLVNLLQTAEFDIK 350
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Query: 23 LAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNA 81
L+ E S V G +P V+ L D ++Q AA AL +A EN +++ A
Sbjct: 102 LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 161
Query: 82 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-R 140
+P + +L S + +AV +GN+ SP + VLA GAL P++ L+ S R
Sbjct: 162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 221
Query: 141 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 200
A L F R A+ L ++ S D ++ + +AL L+ +++
Sbjct: 222 NATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQ 280
Query: 201 IAHNGGLVP-LLKLL 214
G+ P L++LL
Sbjct: 281 AVIEAGVCPRLVELL 295
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 89/172 (51%), Gaps = 4/172 (2%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGI-PPLVELLEFTDTKVQRAAAGALRTLAFKND 70
V+ A A++ L+ + ++ K + +E G+ P LVELL V A + + +D
Sbjct: 260 VLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 318
Query: 71 ENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 129
I++ ALP L+ L+ ++ +I EA I N+ + + + V+ AG + P++
Sbjct: 319 AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVN 378
Query: 130 LLSSCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQL 180
LL + + ++EAA + + S ++ ++V G ++PL ++L PD+++
Sbjct: 379 LLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRI 430
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 83/178 (46%), Gaps = 3/178 (1%)
Query: 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
+P L L+ D +V A AL L+ ++ ++E P L+ +L ++
Sbjct: 246 LPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIP 305
Query: 100 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAALLLGQFAATDSDCKV 158
A+ +GN+V + ++ AL ++ LL+ +S ++EA + A + D
Sbjct: 306 ALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ 365
Query: 159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGR-LAQDMHNQAG-IAHNGGLVPLLKLL 214
++ G + PL+ +LQ+ + +++ +A+A+ + H+Q + G + PL LL
Sbjct: 366 AVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 423
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 100/253 (39%), Gaps = 11/253 (4%)
Query: 16 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ 75
AA A+TN+A S V G +P V+LL + V+ A AL +A + + ++
Sbjct: 138 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL 197
Query: 76 IVECNALPTLILMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 134
++ AL L+ L ++ A + N P E AL + L+ S
Sbjct: 198 VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP-ALPALARLIHSN 256
Query: 135 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML--QSPDVQLREMSAFALGRLA 192
E +A L + +D +++ G L+E+L SP V + +
Sbjct: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG 316
Query: 193 QDMHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGL-ADNEDNVADFIRVGG--- 247
D Q I H L LL LL S++ A + + + A N+D + I G
Sbjct: 317 DDAQTQCIIDHQ-ALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGP 375
Query: 248 -VQKLQDGEFIVQ 259
V LQ EF ++
Sbjct: 376 LVNLLQTAEFDIK 388
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
+++V AA + +L + N +KT VR GIP LV LL+ +V A GAL+ ++F
Sbjct: 61 LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120
Query: 69 NDE-NKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119
D+ NK I C+ +P L+ +LR + D + G + NL S +IK E++
Sbjct: 121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL-SSHDSIKMEIV 172
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
+P ++ +L F V+ AA L+ L ++ND+ K + + +P L+ +L +H
Sbjct: 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLG 109
Query: 100 AVGVIGNL 107
A G + N+
Sbjct: 110 ACGALKNI 117
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 16/150 (10%)
Query: 11 SVIRRAADAITNLAHENSS----IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 66
+++ +A AI NL + I++ +R E + + +LL +V +AA+GALR LA
Sbjct: 324 AILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA 383
Query: 67 FKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 124
D +++ +A+P L+ L ++S+ ++ VI L + I + + AA L
Sbjct: 384 V--DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL 441
Query: 125 QPVIG-----LLSSCCSESQRE---AALLL 146
+ G L++ + S++E AAL+L
Sbjct: 442 RETQGIEKLVLINKSGNRSEKEVRAAALVL 471
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 102
LVELL T VQ A A+ + ND ++ LP L L+L S I EA
Sbjct: 217 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 276
Query: 103 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD---SDCKVH 159
I N+ + + V+ A + P++ LL ++++EA + ++ D +
Sbjct: 277 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 336
Query: 160 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+V +G ++PL ++L+ D ++ E++ AL
Sbjct: 337 LVSQGCIKPLCDLLEIADNRIIEVTLDAL 365
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
S+IR A ++NL + +P L +L+ DT+ A A+ L+
Sbjct: 143 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 202
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E +++ L+ +L E + + A+ +GN+V + + V+ AG L + L
Sbjct: 203 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 262
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
LSS ++EA + A +++ ++ + PL+++L+ + + ++ + +A+
Sbjct: 263 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 322
Query: 191 LAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE----- 236
+ + I G + PL LL+ + + AL G AD E
Sbjct: 323 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 382
Query: 237 -DNVADFI-RVGGVQKL 251
+ ADFI + GG++K+
Sbjct: 383 INENADFIEKAGGMEKI 399
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 38 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 43 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 102
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 103 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 162
Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 214
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 163 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 221
Query: 215 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 267
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 222 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 279
Query: 268 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 317
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 280 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 334
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 93/201 (46%), Gaps = 2/201 (0%)
Query: 15 RAADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 73
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + +
Sbjct: 63 EAAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 74 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 133
+ +++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 122 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS 181
Query: 134 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 193
+E+ +A + + + ++ + L+E+L ++ + A+G +
Sbjct: 182 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 241
Query: 194 DMHNQAGIAHNGGLVPLLKLL 214
Q + N G++P L+LL
Sbjct: 242 GNDLQTQVVINAGVLPALRLL 262
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 110/282 (39%), Gaps = 12/282 (4%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
V +A A+ N+A +++ + V + P++ L + R A L L
Sbjct: 102 VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 161
Query: 72 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
+ V ALPTL ++ S D+ +A I L + V+ + ++ LL
Sbjct: 162 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL 221
Query: 132 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE-MLQSPDVQLREMSAFALGR 190
S + Q A +G T +D + +V V P + +L SP +++ + + +
Sbjct: 222 SHESTLVQTPALRAVGNI-VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 280
Query: 191 LAQDMHNQAGIAHNGGLV-PLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV---- 245
+ Q + L+ PL+KLL+ + A +A+ + D IR
Sbjct: 281 ITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQ 340
Query: 246 GGVQKLQD-----GEFIVQATKDCVAKTLKRLEEKIHGRVLN 282
G ++ L D I++ T D + LK E R LN
Sbjct: 341 GCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 382
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 20 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 79
I + ++ S K +V GGI LV+LL + VQ+AAAGALR L F++ NK +
Sbjct: 26 IQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85
Query: 80 NALPTLILMLRSEDSA-IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
N + + +LR +A I + G++ NL SS + KE L A AL PV+
Sbjct: 86 NGIREAVSLLRRTGNAEIQKQLTGLLWNL--SSTDELKEELIADAL-PVL 132
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
IP V+ L D K Q A ++ F+++ K Q+ + + L+ +LRS + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 100 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATD 153
A G + NLV S K E ++ + LL + +E Q++ LL ++TD
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 37 EGGIPPLVELLEFTDTKVQRAAAGALRTLA---FKNDENKNQIV-ECNALPTLILMLRSE 92
E G+P + LL+ ++ V R+ A L ++ + NQ+ E L T S
Sbjct: 330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSN 389
Query: 93 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 146
I A + NL+ S P + K+ ++ L +I L S S EAA LL
Sbjct: 390 SEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 102
LVELL T VQ A A+ + ND ++ LP L L+L S I EA
Sbjct: 217 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 276
Query: 103 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD---SDCKVH 159
I N+ + + V+ A + P++ LL ++++EA + ++ D +
Sbjct: 277 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 336
Query: 160 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+V +G ++PL ++L+ D ++ E++ AL
Sbjct: 337 LVSQGCIKPLCDLLEIADNRIIEVTLDAL 365
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
S+IR A ++NL + +P L +L+ DT+ A A+ L+
Sbjct: 143 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 202
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E +++ L+ +L E + + A+ +GN+V + + V+ AG L + L
Sbjct: 203 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 262
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
LSS ++EA + A +++ ++ + PL+++L+ + + ++ + +A+
Sbjct: 263 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 322
Query: 191 LAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE----- 236
+ + I G + PL LL+ + + AL G AD E
Sbjct: 323 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 382
Query: 237 -DNVADFI-RVGGVQKL 251
+ ADFI + GG++K+
Sbjct: 383 INENADFIEKAGGMEKI 399
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 38 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 43 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 102
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 103 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 162
Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 214
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 163 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 221
Query: 215 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 267
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 222 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 279
Query: 268 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 317
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 280 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 334
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 101/220 (45%), Gaps = 3/220 (1%)
Query: 15 RAADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 73
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + +
Sbjct: 63 EAAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 74 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 133
+ +++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 122 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS 181
Query: 134 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 193
+E+ +A + + + ++ + L+E+L ++ + A+G +
Sbjct: 182 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 241
Query: 194 DMHNQAGIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGL 232
Q + N G++P L+ LL S +++ A + + +
Sbjct: 242 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 281
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 110/282 (39%), Gaps = 12/282 (4%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
V +A A+ N+A +++ + V + P++ L + R A L L
Sbjct: 102 VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 161
Query: 72 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
+ V ALPTL ++ S D+ +A I L + V+ + ++ LL
Sbjct: 162 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL 221
Query: 132 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE-MLQSPDVQLREMSAFALGR 190
S + Q A +G T +D + +V V P + +L SP +++ + + +
Sbjct: 222 SHESTLVQTPALRAVGNI-VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 280
Query: 191 LAQDMHNQAGIAHNGGLV-PLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV---- 245
+ Q + L+ PL+KLL+ + A +A+ + D IR
Sbjct: 281 ITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQ 340
Query: 246 GGVQKLQD-----GEFIVQATKDCVAKTLKRLEEKIHGRVLN 282
G ++ L D I++ T D + LK E R LN
Sbjct: 341 GCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 382
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 102
LVELL T VQ A A+ + ND ++ LP L L+L S I EA
Sbjct: 218 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 277
Query: 103 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD---SDCKVH 159
I N+ + + V+ A + P++ LL ++++EA + ++ D +
Sbjct: 278 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 337
Query: 160 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+V +G ++PL ++L+ D ++ E++ AL
Sbjct: 338 LVSQGCIKPLCDLLEIADNRIIEVTLDAL 366
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
S+IR A ++NL + +P L +L+ DT+ A A+ L+
Sbjct: 144 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 203
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E +++ L+ +L E + + A+ +GN+V + + V+ AG L + L
Sbjct: 204 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 263
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
LSS ++EA + A +++ ++ + PL+++L+ + + ++ + +A+
Sbjct: 264 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 323
Query: 191 LAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE----- 236
+ + I G + PL LL+ + + AL G AD E
Sbjct: 324 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 383
Query: 237 -DNVADFI-RVGGVQKL 251
+ ADFI + GG++K+
Sbjct: 384 INENADFIEKAGGMEKI 400
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 38 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 44 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 103
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 104 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 163
Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 214
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 164 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 222
Query: 215 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 267
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 223 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 280
Query: 268 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 317
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 281 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 335
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 106/232 (45%), Gaps = 4/232 (1%)
Query: 15 RAADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 73
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + +
Sbjct: 64 EAAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 122
Query: 74 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 133
+ +++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 123 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS 182
Query: 134 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 193
+E+ +A + + + ++ + L+E+L ++ + A+G +
Sbjct: 183 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 242
Query: 194 DMHNQAGIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGL-ADNEDNVADFI 243
Q + N G++P L+ LL S +++ A + + + A N + + I
Sbjct: 243 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 294
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 110/282 (39%), Gaps = 12/282 (4%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
V +A A+ N+A +++ + V + P++ L + R A L L
Sbjct: 103 VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 162
Query: 72 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
+ V ALPTL ++ S D+ +A I L + V+ + ++ LL
Sbjct: 163 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL 222
Query: 132 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE-MLQSPDVQLREMSAFALGR 190
S + Q A +G T +D + +V V P + +L SP +++ + + +
Sbjct: 223 SHESTLVQTPALRAVGNI-VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 281
Query: 191 LAQDMHNQAGIAHNGGLV-PLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV---- 245
+ Q + L+ PL+KLL+ + A +A+ + D IR
Sbjct: 282 ITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQ 341
Query: 246 GGVQKLQD-----GEFIVQATKDCVAKTLKRLEEKIHGRVLN 282
G ++ L D I++ T D + LK E R LN
Sbjct: 342 GCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 383
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 102
LVELL T VQ A A+ + ND ++ LP L L+L S I EA
Sbjct: 218 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 277
Query: 103 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD---SDCKVH 159
I N+ + + V+ A + P++ LL ++++EA + ++ D +
Sbjct: 278 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 337
Query: 160 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+V +G ++PL ++L+ D ++ E++ AL
Sbjct: 338 LVSQGCIKPLCDLLEIADNRIIEVTLDAL 366
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
S+IR A ++NL + +P L +L+ DT+ A A+ L+
Sbjct: 144 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 203
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E +++ L+ +L E + + A+ +GN+V + + V+ AG L + L
Sbjct: 204 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 263
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
LSS ++EA + A +++ ++ + PL+++L+ + + ++ + +A+
Sbjct: 264 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 323
Query: 191 LAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE----- 236
+ + I G + PL LL+ + + AL G AD E
Sbjct: 324 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 383
Query: 237 -DNVADFI-RVGGVQKL 251
+ ADFI + GG++K+
Sbjct: 384 INENADFIEKAGGMEKI 400
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 38 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 44 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 103
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 104 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 163
Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 214
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 164 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 222
Query: 215 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 267
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 223 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 280
Query: 268 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 317
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 281 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 335
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 106/232 (45%), Gaps = 4/232 (1%)
Query: 15 RAADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 73
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + +
Sbjct: 64 EAAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 122
Query: 74 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 133
+ +++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 123 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS 182
Query: 134 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 193
+E+ +A + + + ++ + L+E+L ++ + A+G +
Sbjct: 183 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 242
Query: 194 DMHNQAGIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGL-ADNEDNVADFI 243
Q + N G++P L+ LL S +++ A + + + A N + + I
Sbjct: 243 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 294
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 110/282 (39%), Gaps = 12/282 (4%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
V +A A+ N+A +++ + V + P++ L + R A L L
Sbjct: 103 VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 162
Query: 72 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
+ V ALPTL ++ S D+ +A I L + V+ + ++ LL
Sbjct: 163 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL 222
Query: 132 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE-MLQSPDVQLREMSAFALGR 190
S + Q A +G T +D + +V V P + +L SP +++ + + +
Sbjct: 223 SHESTLVQTPALRAVGNI-VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 281
Query: 191 LAQDMHNQAGIAHNGGLV-PLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV---- 245
+ Q + L+ PL+KLL+ + A +A+ + D IR
Sbjct: 282 ITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQ 341
Query: 246 GGVQKLQD-----GEFIVQATKDCVAKTLKRLEEKIHGRVLN 282
G ++ L D I++ T D + LK E R LN
Sbjct: 342 GCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 383
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 389 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI------PNIRWEVFELMMRFIYTG 442
GR F AHR L A+++ F + G + E + +E+ P + E ++ ++YTG
Sbjct: 62 GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG 121
Query: 443 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF 493
+ V+ ++L AD++LL LK C + + + L N +++ L+ +
Sbjct: 122 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMY 172
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
S+IR A ++NL + +P L +L+ DT+ A A+ L+
Sbjct: 142 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 201
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E +++ L+ +L E + + A+ +GN+V + + V+ AG L + L
Sbjct: 202 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 261
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
LSS ++EA + A +++ ++ + PL+++L+ + + ++ + +A+
Sbjct: 262 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 321
Query: 191 LAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE----- 236
+ + I G + PL LL+ + + AL G AD E
Sbjct: 322 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 381
Query: 237 -DNVADFI-RVGGVQKL 251
+ ADFI + GG++K+
Sbjct: 382 INENADFIEKAGGMEKI 398
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 106/232 (45%), Gaps = 4/232 (1%)
Query: 15 RAADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 73
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + +
Sbjct: 62 EAAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 74 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 133
+ +++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 121 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS 180
Query: 134 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 193
+E+ +A + + + ++ + L+E+L ++ + A+G +
Sbjct: 181 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 240
Query: 194 DMHNQAGIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGL-ADNEDNVADFI 243
Q + N G++P L+ LL S +++ A + + + A N + + I
Sbjct: 241 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 292
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 38 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 42 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 101
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 102 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 161
Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 214
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 162 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 220
Query: 215 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 267
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 221 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 278
Query: 268 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 317
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 279 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 333
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 110/282 (39%), Gaps = 12/282 (4%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
V +A A+ N+A +++ + V + P++ L + R A L L
Sbjct: 101 VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 160
Query: 72 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
+ V ALPTL ++ S D+ +A I L + V+ + ++ LL
Sbjct: 161 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL 220
Query: 132 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE-MLQSPDVQLREMSAFALGR 190
S + Q A +G T +D + +V V P + +L SP +++ + + +
Sbjct: 221 SHESTLVQTPALRAVGNI-VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 279
Query: 191 LAQDMHNQAGIAHNGGLV-PLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV---- 245
+ Q + L+ PL+KLL+ + A +A+ + D IR
Sbjct: 280 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ 339
Query: 246 GGVQKLQD-----GEFIVQATKDCVAKTLKRLEEKIHGRVLN 282
G ++ L D I++ T D + LK E R LN
Sbjct: 340 GCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 381
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
S+IR A ++NL + +P L +L+ DT+ A A+ L+
Sbjct: 142 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 201
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E +++ L+ +L E + + A+ +GN+V + + V+ AG L + L
Sbjct: 202 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 261
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
LSS ++EA + A +++ ++ + PL+++L+ + + ++ + +A+
Sbjct: 262 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 321
Query: 191 LAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE----- 236
+ + I G + PL LL+ + + AL G AD E
Sbjct: 322 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIIKMGEADKEARGLN 381
Query: 237 -DNVADFI-RVGGVQKL 251
+ ADFI + GG++K+
Sbjct: 382 INENADFIEKAGGMEKI 398
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 106/232 (45%), Gaps = 4/232 (1%)
Query: 15 RAADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 73
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + +
Sbjct: 62 EAAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 74 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 133
+ +++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 121 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS 180
Query: 134 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 193
+E+ +A + + + ++ + L+E+L ++ + A+G +
Sbjct: 181 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 240
Query: 194 DMHNQAGIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGL-ADNEDNVADFI 243
Q + N G++P L+ LL S +++ A + + + A N + + I
Sbjct: 241 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 292
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 38 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 42 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 101
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 102 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 161
Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 214
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 162 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 220
Query: 215 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 267
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 221 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 278
Query: 268 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 317
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 279 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 333
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 110/282 (39%), Gaps = 12/282 (4%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
V +A A+ N+A +++ + V + P++ L + R A L L
Sbjct: 101 VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 160
Query: 72 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
+ V ALPTL ++ S D+ +A I L + V+ + ++ LL
Sbjct: 161 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL 220
Query: 132 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE-MLQSPDVQLREMSAFALGR 190
S + Q A +G T +D + +V V P + +L SP +++ + + +
Sbjct: 221 SHESTLVQTPALRAVGNI-VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 279
Query: 191 LAQDMHNQAGIAHNGGLV-PLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV---- 245
+ Q + L+ PL+KLL+ + A +A+ + D IR
Sbjct: 280 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ 339
Query: 246 GGVQKLQD-----GEFIVQATKDCVAKTLKRLEEKIHGRVLN 282
G ++ L D I++ T D + +K E R LN
Sbjct: 340 GCIKPLCDLLEIADNRIIEVTLDALENIIKMGEADKEARGLN 381
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
S+IR A ++NL + +P L +L+ DT+ A A+ L+
Sbjct: 230 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 289
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E +++ L+ +L E + + A+ +GN+V + + V+ AG L + L
Sbjct: 290 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 349
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
LSS ++EA + A +++ ++ + PL+++L+ + + ++ + +A+
Sbjct: 350 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 409
Query: 191 LAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE----- 236
+ + I G + PL LL+ + + AL G AD E
Sbjct: 410 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 469
Query: 237 -DNVADFI-RVGGVQKL 251
+ ADFI + GG++K+
Sbjct: 470 INENADFIEKAGGMEKI 486
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 101/219 (46%), Gaps = 3/219 (1%)
Query: 16 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 74
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + ++
Sbjct: 151 AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209
Query: 75 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 134
+++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 210 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269
Query: 135 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 194
+E+ +A + + + ++ + L+E+L ++ + A+G +
Sbjct: 270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 329
Query: 195 MHNQAGIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGL 232
Q + N G++P L+ LL S +++ A + + +
Sbjct: 330 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 38 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 189
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 190 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 249
Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 214
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 308
Query: 215 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 267
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 309 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 366
Query: 268 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 317
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 367 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 421
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 110/282 (39%), Gaps = 12/282 (4%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
V +A A+ N+A +++ + V + P++ L + R A L L
Sbjct: 189 VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 248
Query: 72 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
+ V ALPTL ++ S D+ +A I L + V+ + ++ LL
Sbjct: 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL 308
Query: 132 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE-MLQSPDVQLREMSAFALGR 190
S + Q A +G T +D + +V V P + +L SP +++ + + +
Sbjct: 309 SHESTLVQTPALRAVGNI-VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367
Query: 191 LAQDMHNQAGIAHNGGLV-PLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV---- 245
+ Q + L+ PL+KLL+ + A +A+ + D IR
Sbjct: 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ 427
Query: 246 GGVQKLQD-----GEFIVQATKDCVAKTLKRLEEKIHGRVLN 282
G ++ L D I++ T D + LK E R LN
Sbjct: 428 GCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 469
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
L DV LVEGR F HR L A S F+ +F G EI + E +M F
Sbjct: 25 LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 84
Query: 440 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 470
YT ++ V+ D+L AA + + +C
Sbjct: 85 YTATLTVSTANVGDILSAARLLEIPAVSHVC 115
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
L DV LVEGR F HR L A S F+ +F G EI + E +M F
Sbjct: 35 LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 94
Query: 440 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 470
YT ++ V+ D+L AA + + +C
Sbjct: 95 YTATLTVSTANVGDILSAARLLEIPAVSHVC 125
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 389 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI------PNIRWEVFELMMRFIYTG 442
GR F AHR L A+++ F + G + E + +E P + E ++ + YTG
Sbjct: 44 GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTG 103
Query: 443 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF 493
+ V+ ++L AD++LL LK C + + + L N +++ L+ +
Sbjct: 104 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHXY 154
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of
Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant
Length = 233
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
S I AA I + + S + RV GI L++LL+ + VQRA GALR L F+++
Sbjct: 25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84
Query: 71 ENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 124
+NK ++ E N +P L+ +L+ + D + G++ NL SS + K ++ AL
Sbjct: 85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL--SSNDKLKNLMITEAL 137
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 211
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 43/176 (24%)
Query: 54 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 113
V+RAAA AL +I + A+ LI L+ ED+ + A +G +
Sbjct: 35 VRRAAAYAL-----------GKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-- 81
Query: 114 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 173
A++P+I L ++ AA+ LGQ I AV PLI+ L
Sbjct: 82 ---------AVEPLIKALKDEDGWVRQSAAVALGQ-----------IGDERAVEPLIKAL 121
Query: 174 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 229
+ D +R +AFALG + + + PL+K L ++G ++ +AA AL
Sbjct: 122 KDEDWFVRIAAAFALGEIGDER----------AVEPLIKALKDEDGWVRQSAADAL 167
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 33/155 (21%)
Query: 37 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
E + PL++ L+ D V+RAAA AL QI + A+ LI L+ ED +
Sbjct: 49 ERAVEPLIKALKDEDAWVRRAAADAL-----------GQIGDERAVEPLIKALKDEDGWV 97
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
A +G + A++P+I L + AA LG+
Sbjct: 98 RQSAAVALGQIGDER-----------AVEPLIKALKDEDWFVRIAAAFALGE-------- 138
Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 191
I AV PLI+ L+ D +R+ +A ALG +
Sbjct: 139 ---IGDERAVEPLIKALKDEDGWVRQSAADALGEI 170
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 21/113 (18%)
Query: 123 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 182
A++P+I L + +R AA LGQ I AV PLI+ L+ D +R+
Sbjct: 51 AVEPLIKALKDEDAWVRRAAADALGQ-----------IGDERAVEPLIKALKDEDGWVRQ 99
Query: 183 MSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 235
+A ALG++ + + PL+K L ++ ++ AAFAL + D
Sbjct: 100 SAAVALGQIGDER----------AVEPLIKALKDEDWFVRIAAAFALGEIGDE 142
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 88/190 (46%), Gaps = 9/190 (4%)
Query: 15 RAADAITNLAHENSSIKTRVRMEGG-IPPLVELL--EFTDTKVQRAAAGALRTLAFKNDE 71
+A +TN+A NS ++TR+ ++ G +P +ELL EF D VQ A AL +A +
Sbjct: 81 ESAWVLTNIASGNS-LQTRIVIQAGAVPIFIELLSSEFED--VQEQAVWALGNIAGDSTM 137
Query: 72 NKNQIVECNALPTLILMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
++ +++CN LP L+ + ++ + AV + NL + + L + L
Sbjct: 138 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 197
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
L ++ +A L + +D ++ G R L+E+L D ++ + A+G
Sbjct: 198 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 257
Query: 191 L--AQDMHNQ 198
+ D+ Q
Sbjct: 258 IVTGDDIQTQ 267
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 10/217 (4%)
Query: 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-----LMLRSEDSAIH 97
++E++ + Q +A R L K E I E + P ++ + R E+ +
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSK--EPNPPIDEVISTPGVVARFVEFLKRKENCTLQ 79
Query: 98 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 157
+E+ V+ N+ + + V+ AGA+ I LLSS + Q +A LG A + C+
Sbjct: 80 FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 139
Query: 158 VHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK-LLD 215
+++ + PL+++ + + + + +AL L + A + +L LL
Sbjct: 140 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 199
Query: 216 SKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKL 251
+ + +A +AL L+D D + I G ++L
Sbjct: 200 VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 236
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 93/213 (43%), Gaps = 7/213 (3%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
++ R A A++NL S ++ + L LL +DT V A AL L+ +
Sbjct: 162 TMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN 221
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
+ +++ L+ +L D + A+ +GN+V + +I+ +V+ + +
Sbjct: 222 DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV-TGDDIQTQVILNCSALQSLLH 280
Query: 131 LSSCCSES-QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL- 188
L S ES ++EA + A + ++ LI +LQ+ + + R+ +A+A+
Sbjct: 281 LLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAIT 340
Query: 189 ----GRLAQDMHNQAGIAHNGGLVPLLKLLDSK 217
G A+ + + L LL ++DSK
Sbjct: 341 NATSGGSAEQIKYLVELGCIKPLCDLLTVMDSK 373
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 88/190 (46%), Gaps = 9/190 (4%)
Query: 15 RAADAITNLAHENSSIKTRVRMEGG-IPPLVELL--EFTDTKVQRAAAGALRTLAFKNDE 71
+A +TN+A NS ++TR+ ++ G +P +ELL EF D VQ A AL +A +
Sbjct: 84 ESAWVLTNIASGNS-LQTRIVIQAGAVPIFIELLSSEFED--VQEQAVWALGNIAGDSTM 140
Query: 72 NKNQIVECNALPTLILMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
++ +++CN LP L+ + ++ + AV + NL + + L + L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
L ++ +A L + +D ++ G R L+E+L D ++ + A+G
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 191 L--AQDMHNQ 198
+ D+ Q
Sbjct: 261 IVTGDDIQTQ 270
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 10/217 (4%)
Query: 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-----LMLRSEDSAIH 97
++E++ + Q +A R L K E I E + P ++ + R E+ +
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSK--EPNPPIDEVISTPGVVARFVEFLKRKENCTLQ 82
Query: 98 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 157
+E+ V+ N+ + + V+ AGA+ I LLSS + Q +A LG A + C+
Sbjct: 83 FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142
Query: 158 VHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK-LLD 215
+++ + PL+++ + + + + +AL L + A + +L LL
Sbjct: 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202
Query: 216 SKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKL 251
+ + +A +AL L+D D + I G ++L
Sbjct: 203 VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 93/213 (43%), Gaps = 7/213 (3%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
++ R A A++NL S ++ + L LL +DT V A AL L+ +
Sbjct: 165 TMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN 224
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
+ +++ L+ +L D + A+ +GN+V + +I+ +V+ + +
Sbjct: 225 DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV-TGDDIQTQVILNCSALQSLLH 283
Query: 131 LSSCCSES-QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL- 188
L S ES ++EA + A + ++ LI +LQ+ + + R+ +A+A+
Sbjct: 284 LLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAIT 343
Query: 189 ----GRLAQDMHNQAGIAHNGGLVPLLKLLDSK 217
G A+ + + L LL ++DSK
Sbjct: 344 NATSGGSAEQIKYLVELGCIKPLCDLLTVMDSK 376
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 201
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 43/176 (24%)
Query: 54 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 113
V+RAAA AL +I + A+ LI L+ ED+ + A +G +
Sbjct: 30 VRRAAAYAL-----------GKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-- 76
Query: 114 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 173
A++P+I L ++ AA+ LGQ I AV PLI+ L
Sbjct: 77 ---------AVEPLIKALKDEDGWVRQSAAVALGQ-----------IGDERAVEPLIKAL 116
Query: 174 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 229
+ D +R +AFALG I + PL+K L ++G ++ +AA AL
Sbjct: 117 KDEDWFVRIAAAFALGE----------IGDERAVEPLIKALKDEDGWVRQSAADAL 162
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 33/156 (21%)
Query: 37 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
E + PL++ L+ D V+RAAA AL QI + A+ LI L+ ED +
Sbjct: 44 ERAVEPLIKALKDEDAWVRRAAADAL-----------GQIGDERAVEPLIKALKDEDGWV 92
Query: 97 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
A +G + A++P+I L + AA LG+
Sbjct: 93 RQSAAVALGQIGDER-----------AVEPLIKALKDEDWFVRIAAAFALGE-------- 133
Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 192
I AV PLI+ L+ D +R+ +A ALG +
Sbjct: 134 ---IGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 21/113 (18%)
Query: 123 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 182
A++P+I L + +R AA LGQ I AV PLI+ L+ D +R+
Sbjct: 46 AVEPLIKALKDEDAWVRRAAADALGQ-----------IGDERAVEPLIKALKDEDGWVRQ 94
Query: 183 MSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 235
+A ALG+ I + PL+K L ++ ++ AAFAL + D
Sbjct: 95 SAAVALGQ----------IGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 137
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 30 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 88
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 89 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
L+ + L A + + K+ I+ G + L+ ++++ + L ++ L
Sbjct: 149 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 208
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
L+ N+ I GG+ L L + L N + L L+D
Sbjct: 209 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 45/244 (18%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
V+SV+ A + NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 111 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170
Query: 69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
N E+K I+ L+ ++R+ YE L+ ++ + K
Sbjct: 171 NQESKLIILASGGPQALVNIMRTYT----YE------KLLWTTSRVLK------------ 208
Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+LS C S K IV+ G ++ L L P +L + + L
Sbjct: 209 -VLSVCSSN-------------------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 248
Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGG 247
L+ Q G+ G L L++LL S + ++ AA L L +N N +VGG
Sbjct: 249 RNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 306
Query: 248 VQKL 251
++ L
Sbjct: 307 IEAL 310
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 106/259 (40%), Gaps = 30/259 (11%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFK 68
+V+ AA ++NL N K V GGI LV +L D + + A ALR L +
Sbjct: 278 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 337
Query: 69 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 124
+ E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 338 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAI 396
Query: 125 QPVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG- 164
++ LL ++QR ++ G D IV RG
Sbjct: 397 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 456
Query: 165 -AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 457 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 516
Query: 224 NAAFALYGLADNEDNVADF 242
AA L+ ++ ED D+
Sbjct: 517 YAAAVLFRMS--EDKPQDY 533
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 34 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 92
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 93 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 152
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
L+ + L A + + K+ I+ G + L+ ++++ + L ++ L
Sbjct: 153 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 212
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
L+ N+ I GG+ L L + L N + L L+D
Sbjct: 213 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 257
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 45/244 (18%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
V+SV+ A + NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 115 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 174
Query: 69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
N E+K I+ L+ ++R+ YE L+ ++ + K
Sbjct: 175 NQESKLIILASGGPQALVNIMRTYT----YE------KLLWTTSRVLK------------ 212
Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+LS C S K IV+ G ++ L L P +L + + L
Sbjct: 213 -VLSVCSSN-------------------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 252
Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGG 247
L+ Q G+ G L L++LL S + ++ AA L L +N N +VGG
Sbjct: 253 RNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 310
Query: 248 VQKL 251
++ L
Sbjct: 311 IEAL 314
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 106/259 (40%), Gaps = 30/259 (11%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFK 68
+V+ AA ++NL N K V GGI LV +L D + + A ALR L +
Sbjct: 282 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 341
Query: 69 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 124
+ E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 342 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAI 400
Query: 125 QPVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG- 164
++ LL ++QR ++ G D IV RG
Sbjct: 401 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 460
Query: 165 -AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 461 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 520
Query: 224 NAAFALYGLADNEDNVADF 242
AA L+ ++ ED D+
Sbjct: 521 YAAAVLFRMS--EDKPQDY 537
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 31 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 89
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 90 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 149
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
L+ + L A + + K+ I+ G + L+ ++++ + L ++ L
Sbjct: 150 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 209
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
L+ N+ I GG+ L L + L N + L L+D
Sbjct: 210 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 254
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 45/244 (18%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
V+SV+ A + NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 112 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 171
Query: 69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
N E+K I+ L+ ++R+ YE L+ ++ + K
Sbjct: 172 NQESKLIILASGGPQALVNIMRTYT----YE------KLLWTTSRVLK------------ 209
Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+LS C S K IV+ G ++ L L P +L + + L
Sbjct: 210 -VLSVCSSN-------------------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 249
Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGG 247
L+ Q G+ G L L++LL S + ++ AA L L +N N +VGG
Sbjct: 250 RNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 307
Query: 248 VQKL 251
++ L
Sbjct: 308 IEAL 311
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 106/259 (40%), Gaps = 30/259 (11%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFK 68
+V+ AA ++NL N K V GGI LV +L D + + A ALR L +
Sbjct: 279 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 338
Query: 69 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 124
+ E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 339 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAI 397
Query: 125 QPVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG- 164
++ LL ++QR ++ G D IV RG
Sbjct: 398 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 457
Query: 165 -AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 458 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 517
Query: 224 NAAFALYGLADNEDNVADF 242
AA L+ ++ ED D+
Sbjct: 518 YAAAVLFRMS--EDKPQDY 534
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 37 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 95
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 96 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 155
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
L+ + L A + + K+ I+ G + L+ ++++ + L ++ L
Sbjct: 156 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 215
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
L+ N+ I GG+ L L + L N + L L+D
Sbjct: 216 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 260
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 45/244 (18%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
V+SV+ A + NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 118 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 177
Query: 69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
N E+K I+ L+ ++R+ YE L+ ++ + K
Sbjct: 178 NQESKLIILASGGPQALVNIMRTYT----YE------KLLWTTSRVLK------------ 215
Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+LS C S K IV+ G ++ L L P +L + + L
Sbjct: 216 -VLSVCSSN-------------------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 255
Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGG 247
L+ Q G+ G L L++LL S + ++ AA L L +N N +VGG
Sbjct: 256 RNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 313
Query: 248 VQKL 251
++ L
Sbjct: 314 IEAL 317
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 106/259 (40%), Gaps = 30/259 (11%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFK 68
+V+ AA ++NL N K V GGI LV +L D + + A ALR L +
Sbjct: 285 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 344
Query: 69 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 124
+ E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 345 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAI 403
Query: 125 QPVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG- 164
++ LL ++QR ++ G D IV RG
Sbjct: 404 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 463
Query: 165 -AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 464 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 523
Query: 224 NAAFALYGLADNEDNVADF 242
AA L+ ++ ED D+
Sbjct: 524 YAAAVLFRMS--EDKPQDY 540
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 35 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 93
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 94 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 153
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
L+ + L A + + K+ I+ G + L+ ++++ + L ++ L
Sbjct: 154 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 213
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
L+ N+ I GG+ L L + L N + L L+D
Sbjct: 214 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 258
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 45/244 (18%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
V+SV+ A + NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 116 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 175
Query: 69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
N E+K I+ L+ ++R+ YE L+ ++ + K
Sbjct: 176 NQESKLIILASGGPQALVNIMRTYT----YE------KLLWTTSRVLK------------ 213
Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+LS C S K IV+ G ++ L L P +L + + L
Sbjct: 214 -VLSVCSSN-------------------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 253
Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGG 247
L+ Q G+ G L L++LL S + ++ AA L L +N N +VGG
Sbjct: 254 RNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 311
Query: 248 VQKL 251
++ L
Sbjct: 312 IEAL 315
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 104/252 (41%), Gaps = 28/252 (11%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFK 68
+V+ AA ++NL N K V GGI LV +L D + + A ALR L +
Sbjct: 283 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 342
Query: 69 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 124
+ E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 343 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAI 401
Query: 125 QPVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG- 164
++ LL ++QR ++ G D IV RG
Sbjct: 402 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 461
Query: 165 -AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 462 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 521
Query: 224 NAAFALYGLADN 235
AA L+ ++++
Sbjct: 522 YAAAVLFRMSED 533
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 35 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 93
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 94 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 153
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
L+ + L A + + K+ I+ G + L+ ++++ + L ++ L
Sbjct: 154 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 213
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
L+ N+ I GG+ L L + L N + L L+D
Sbjct: 214 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 258
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 45/244 (18%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
V+SV+ A + NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 116 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 175
Query: 69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
N E+K I+ L+ ++R+ YE L+ ++ + K
Sbjct: 176 NQESKLIILASGGPQALVNIMRTYT----YE------KLLWTTSRVLK------------ 213
Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+LS C S K IV+ G ++ L L P +L + + L
Sbjct: 214 -VLSVCSSN-------------------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 253
Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGG 247
L+ Q G+ G L L++LL S + ++ AA L L +N N +VGG
Sbjct: 254 RNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 311
Query: 248 VQKL 251
++ L
Sbjct: 312 IEAL 315
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 103/251 (41%), Gaps = 28/251 (11%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFK 68
+V+ AA ++NL N K V GGI LV +L D + + A ALR L +
Sbjct: 283 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 342
Query: 69 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 124
+ E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 343 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAI 401
Query: 125 QPVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG- 164
++ LL ++QR ++ G D IV RG
Sbjct: 402 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 461
Query: 165 -AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 462 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 521
Query: 224 NAAFALYGLAD 234
AA L+ +++
Sbjct: 522 YAAAVLFRMSE 532
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 36 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 94
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 95 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 154
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
L+ + L A + + K+ I+ G + L+ ++++ + L ++ L
Sbjct: 155 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 214
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
L+ N+ I GG+ L L + L N + L L+D
Sbjct: 215 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 259
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 45/244 (18%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
V+SV+ A + NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 117 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 176
Query: 69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
N E+K I+ L+ ++R+ YE L+ ++ + K
Sbjct: 177 NQESKLIILASGGPQALVNIMRTYT----YE------KLLWTTSRVLK------------ 214
Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+LS C S K IV+ G ++ L L P +L + + L
Sbjct: 215 -VLSVCSSN-------------------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 254
Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGG 247
L+ Q G+ G L L++LL S + ++ AA L L +N N +VGG
Sbjct: 255 RNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 312
Query: 248 VQKL 251
++ L
Sbjct: 313 IEAL 316
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 106/259 (40%), Gaps = 30/259 (11%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFK 68
+V+ AA ++NL N K V GGI LV +L D + + A ALR L +
Sbjct: 284 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 343
Query: 69 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 124
+ E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 344 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAI 402
Query: 125 QPVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG- 164
++ LL ++QR ++ G D IV RG
Sbjct: 403 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 462
Query: 165 -AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 463 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 522
Query: 224 NAAFALYGLADNEDNVADF 242
AA L+ ++ ED D+
Sbjct: 523 YAAAVLFRMS--EDKPQDY 539
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 31 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 89
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 90 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 149
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
L+ + L A + + K+ I+ G + L+ ++++ + L ++ L
Sbjct: 150 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 209
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
L+ N+ I GG+ L L + L N + L L+D
Sbjct: 210 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 254
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 45/244 (18%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
V+SV+ A + NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 112 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 171
Query: 69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
N E+K I+ L+ ++R+ YE L+ ++ + K
Sbjct: 172 NQESKLIILASGGPQALVNIMRTYT----YE------KLLWTTSRVLK------------ 209
Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+LS C S K IV+ G ++ L L P +L + + L
Sbjct: 210 -VLSVCSSN-------------------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 249
Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGG 247
L+ Q G+ G L L++LL S + ++ AA L L +N N +VGG
Sbjct: 250 RNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 307
Query: 248 VQKL 251
++ L
Sbjct: 308 IEAL 311
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 28/250 (11%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFK 68
+V+ AA ++NL N K V GGI LV +L D + + A ALR L +
Sbjct: 279 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 338
Query: 69 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 124
+ E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 339 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAI 397
Query: 125 QPVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG- 164
++ LL ++QR ++ G D IV RG
Sbjct: 398 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 457
Query: 165 -AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 458 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 517
Query: 224 NAAFALYGLA 233
AA L+ ++
Sbjct: 518 YAAAVLFRMS 527
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 20 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 78
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 79 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 138
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
L+ + L A + + K+ I+ G + L+ ++++ + L ++ L
Sbjct: 139 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 198
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
L+ N+ I GG+ L L + L N + L L+D
Sbjct: 199 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 243
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 45/244 (18%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
V+SV+ A + NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 101 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 160
Query: 69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
N E+K I+ L+ ++R+ YE L+ ++ + K
Sbjct: 161 NQESKLIILASGGPQALVNIMRTYT----YE------KLLWTTSRVLK------------ 198
Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+LS C S K IV+ G ++ L L P +L + + L
Sbjct: 199 -VLSVCSSN-------------------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 238
Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGG 247
L+ Q G+ G L L++LL S + ++ AA L L +N N +VGG
Sbjct: 239 RNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 296
Query: 248 VQKL 251
++ L
Sbjct: 297 IEAL 300
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 104/252 (41%), Gaps = 28/252 (11%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFK 68
+V+ AA ++NL N K V GGI LV +L D + + A ALR L +
Sbjct: 268 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 327
Query: 69 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 124
+ E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 328 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAI 386
Query: 125 QPVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG- 164
++ LL ++QR ++ G D IV RG
Sbjct: 387 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 446
Query: 165 -AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 447 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 506
Query: 224 NAAFALYGLADN 235
AA L+ ++++
Sbjct: 507 YAAAVLFRMSED 518
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 33 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 91
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 92 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
L+ + L A + + K+ I+ G + L+ ++++ + L ++ L
Sbjct: 152 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 211
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
L+ N+ I GG+ L L + L N + L L+D
Sbjct: 212 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 45/244 (18%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
V+SV+ A + NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 114 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173
Query: 69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
N E+K I+ L+ ++R+ YE L+ ++ + K
Sbjct: 174 NQESKLIILASGGPQALVNIMRTYT----YE------KLLWTTSRVLK------------ 211
Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+LS C S K IV+ G ++ L L P +L + + L
Sbjct: 212 -VLSVCSSN-------------------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251
Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGG 247
L+ Q G+ G L L++LL S + ++ AA L L +N N +VGG
Sbjct: 252 RNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 309
Query: 248 VQKL 251
++ L
Sbjct: 310 IEAL 313
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 28/250 (11%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFK 68
+V+ AA ++NL N K V GGI LV +L D + + A ALR L +
Sbjct: 281 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340
Query: 69 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 124
+ E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAI 399
Query: 125 QPVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG- 164
++ LL ++QR ++ G D IV RG
Sbjct: 400 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 459
Query: 165 -AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 519
Query: 224 NAAFALYGLA 233
AA L+ ++
Sbjct: 520 YAAAVLFRMS 529
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 18 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 76
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 77 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 136
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
L+ + L A + + K+ I+ G + L+ ++++ + L ++ L
Sbjct: 137 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 196
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
L+ N+ I GG+ L L + L N + L L+D
Sbjct: 197 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 241
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 45/244 (18%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
V+SV+ A + NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 99 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 158
Query: 69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
N E+K I+ L+ ++R+ YE L+ ++ + K
Sbjct: 159 NQESKLIILASGGPQALVNIMRTYT----YE------KLLWTTSRVLK------------ 196
Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+LS C S K IV+ G ++ L L P +L + + L
Sbjct: 197 -VLSVCSSN-------------------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 236
Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGG 247
L+ Q G+ G L L++LL S + ++ AA L L +N N +VGG
Sbjct: 237 RNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 294
Query: 248 VQKL 251
++ L
Sbjct: 295 IEAL 298
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 104/252 (41%), Gaps = 28/252 (11%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFK 68
+V+ AA ++NL N K V GGI LV +L D + + A ALR L +
Sbjct: 266 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 325
Query: 69 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 124
+ E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 326 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAI 384
Query: 125 QPVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG- 164
++ LL ++QR ++ G D IV RG
Sbjct: 385 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 444
Query: 165 -AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 445 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 504
Query: 224 NAAFALYGLADN 235
AA L+ ++++
Sbjct: 505 YAAAVLFRMSED 516
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 361 PPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR 420
P PT + +Q TL DV +V+ + F+AHR L +S F +F ++++
Sbjct: 8 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQ 62
Query: 421 DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAA 458
+ + + F+ ++ + YT ++ + DLL AA
Sbjct: 63 HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 100
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 18 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 76
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 77 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 136
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
L+ + L A + + K+ I+ G + L+ ++++ + L ++ L
Sbjct: 137 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 196
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
L+ N+ I GG+ L L + L N + L L+D
Sbjct: 197 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 241
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 45/244 (18%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
V+SV+ A + NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 99 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 158
Query: 69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
N E+K I+ L+ ++R+ YE L+ ++ + K
Sbjct: 159 NQESKLIILASGGPQALVNIMRTYT----YE------KLLWTTSRVLK------------ 196
Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+LS C S K IV+ G ++ L L P +L + + L
Sbjct: 197 -VLSVCSSN-------------------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 236
Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGG 247
L+ Q G+ G L L++LL S + ++ AA L L +N N +VGG
Sbjct: 237 RNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 294
Query: 248 VQKL 251
++ L
Sbjct: 295 IEAL 298
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 28/250 (11%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFK 68
+V+ AA ++NL N K V GGI LV +L D + + A ALR L +
Sbjct: 266 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 325
Query: 69 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 124
+ E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 326 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAI 384
Query: 125 QPVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG- 164
++ LL ++QR ++ G D IV RG
Sbjct: 385 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 444
Query: 165 -AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 445 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 504
Query: 224 NAAFALYGLA 233
AA L+ ++
Sbjct: 505 YAAAVLFRMS 514
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 361 PPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR 420
P PT + +Q TL DV +V+ + F+AHR L +S F +F ++++
Sbjct: 9 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQ 63
Query: 421 DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAA 458
+ + + F+ ++ + YT ++ + DLL AA
Sbjct: 64 HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 101
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 22 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 80
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 81 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 140
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
L+ + L A + + K+ I+ G + L+ ++++ + L ++ L
Sbjct: 141 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 200
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
L+ N+ I GG+ L L + L N + L L+D
Sbjct: 201 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 245
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 45/244 (18%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
V+SV+ A + NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 103 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 162
Query: 69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
N E+K I+ L+ ++R+ YE L+ ++ + K
Sbjct: 163 NQESKLIILASGGPQALVNIMRTYT----YE------KLLWTTSRVLK------------ 200
Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+LS C S K IV+ G ++ L L P +L + + L
Sbjct: 201 -VLSVCSSN-------------------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 240
Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGG 247
L+ Q G+ G L L++LL S + ++ AA L L +N N +VGG
Sbjct: 241 RNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 298
Query: 248 VQKL 251
++ L
Sbjct: 299 IEAL 302
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 103/251 (41%), Gaps = 28/251 (11%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFK 68
+V+ AA ++NL N K V GGI LV +L D + + A ALR L +
Sbjct: 270 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 329
Query: 69 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 124
+ E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 330 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAI 388
Query: 125 QPVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG- 164
++ LL ++QR ++ G D IV RG
Sbjct: 389 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 448
Query: 165 -AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 449 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 508
Query: 224 NAAFALYGLAD 234
AA L+ +++
Sbjct: 509 YAAAVLFRMSE 519
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 382 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 441
DVT +VE R+F AH+ L ASS F +F + +E+ IR E+F ++ +IY+
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYS 89
Query: 442 GS-VDVTLDIAQDLLRAADQYLLEGLKRLCE 471
V V D+ +L+++ L G+K + E
Sbjct: 90 SKIVRVRSDLLDELIKSGQ---LLGVKFIAE 117
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 3/225 (1%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S +R + +V ++ T D + R +G L L+
Sbjct: 166 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR- 224
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 225 EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
L+ + L A + + K+ I+ G + L+ ++++ + L ++ L
Sbjct: 285 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 344
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
L+ N+ I GG+ L L + L N + L L+D
Sbjct: 345 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 389
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 6/206 (2%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
V+SV+ A + NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 247 VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 306
Query: 69 NDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 127
N E+K I+ L+ ++R+ + + V+ L S N K ++ AG +Q
Sbjct: 307 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQ-A 364
Query: 128 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA 187
+GL SQR L G + L+++L S D+ + +A
Sbjct: 365 LGL--HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 422
Query: 188 LGRLA-QDMHNQAGIAHNGGLVPLLK 212
L L + N+ + GG+ L++
Sbjct: 423 LSNLTCNNYKNKMMVCQVGGIEALVR 448
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 106/259 (40%), Gaps = 30/259 (11%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFK 68
+V+ AA ++NL N K V GGI LV +L D + + A ALR L +
Sbjct: 414 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473
Query: 69 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 124
+ + +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 474 HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAI 532
Query: 125 QPVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG- 164
++ LL ++QR ++ G D IV RG
Sbjct: 533 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGL 592
Query: 165 -AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 593 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 652
Query: 224 NAAFALYGLADNEDNVADF 242
AA L+ ++ ED D+
Sbjct: 653 YAAAVLFRMS--EDKPQDY 669
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 382 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 441
DVT +VE R+F AH+ L ASS F +F + +E+ IR E+F ++ +IY+
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYS 87
Query: 442 GS-VDVTLDIAQDLLRAA 458
V V D+ +L+++
Sbjct: 88 SKIVRVRSDLLDELIKSG 105
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 382 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIY 440
DV+ +V+G F AHR L ASS FR +F+ + +E+P ++ + F+ ++ F Y
Sbjct: 35 DVSVVVKGHAFKAHRAVLAASSSYFRDLFN----NSRSAVVELPAAVQPQSFQQILSFCY 90
Query: 441 TGSVDVTLDIAQDLLRAADQYL 462
TG + + + QDLL +L
Sbjct: 91 TGRLSMNVG-DQDLLMYTAGFL 111
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR-DIEIP-NIRWEVFELMMR 437
L DVT LVEG+RF AHR L A S F + G + DA + +P + + FE +++
Sbjct: 36 LCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVG---QTDAELTVTLPEEVTVKGFEPLIQ 92
Query: 438 FIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 470
F YT + ++ D ++ R + + ++ C
Sbjct: 93 FAYTAKLILSKDNVDEVCRCVEFLSVHNIEESC 125
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
L D TF+V+G F AH+ L A S+ F+ +F +KD ++I N ++ F+
Sbjct: 27 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF---VDQKDVVHLDISNAAG--LGQVLEFM 81
Query: 440 YTGSVDVTLDIAQDLLRAA 458
YT + ++ + D+L A
Sbjct: 82 YTAKLSLSPENVDDVLAVA 100
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
L D TF+V+G F AH+ L A S+ F+ +F +KD ++I N ++ F+
Sbjct: 25 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF---VDQKDVVHLDISNAAG--LGQVLEFM 79
Query: 440 YTGSVDVTLDIAQDLLRAA 458
YT + ++ + D+L A
Sbjct: 80 YTAKLSLSPENVDDVLAVA 98
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 27/253 (10%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK--VQRAAAGALRTLAFK 68
+V+ A ++NL NS KT V G+ L+ + K + A ALR L +
Sbjct: 283 NVLTCATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSR 342
Query: 69 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 124
+ E +N + +P ++ +L + +A +G+I NL N + A +
Sbjct: 343 HPEAEMAQNSVRLNYGIPAIVKLLNQPNQWPLVKATIGLIRNLALCPAN-HAPLQEAAVI 401
Query: 125 QPVIGLLSSCCSESQREAALLLGQ--------------------FAATDSDCKVHIVQRG 164
++ LL ++QR A Q A D ++ I +
Sbjct: 402 PRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLN 461
Query: 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 224
+ +++L S ++ ++A L LAQD I G PL++LL S+N
Sbjct: 462 TIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAPLMELLHSRNEGTATY 521
Query: 225 AAFALYGLADNED 237
AA L+ ++++++
Sbjct: 522 AAAVLFRISEDKN 534
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 3/225 (1%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S + + + +V ++ T D R L L+ +
Sbjct: 35 VVTKAAMIVNQLSKKEASRRALMGSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSH-HR 93
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V A LQ ++ L
Sbjct: 94 EGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPL 153
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
L+ + L A + + K+ I+ G + L++++++ + L ++ L
Sbjct: 154 LNKNNPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLK 213
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
L+ N+ I GG+ L K L S + L N + L L+D
Sbjct: 214 VLSVCPSNKPAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSD 258
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%)
Query: 6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 65
S V SV+ A + NL K VR+ G+ +V LL + K L+ L
Sbjct: 113 SSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNPKFLAITTDCLQLL 172
Query: 66 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 125
A+ N E+K I+ L+ ++R+ + ++ P+ K ++ AG +Q
Sbjct: 173 AYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVEAGGMQ 232
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 29 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 87
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 88 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 147
Query: 131 LSSCCSESQREAALLLGQFAATDSDC 156
L+ +F A +DC
Sbjct: 148 LNKTNV-----------KFLAITTDC 162
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 67
V+SV+ A + NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 110 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 168
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 29 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 87
Query: 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 88 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 147
Query: 131 LSSCCSESQREAALLLGQFAATDSDC 156
L+ +F A +DC
Sbjct: 148 LNKTNV-----------KFLAITTDC 162
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 66
V+SV+ A + NL K VR+ GG+ +V LL T+ K L+ LA
Sbjct: 110 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 167
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 94/244 (38%), Gaps = 45/244 (18%)
Query: 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
V+SV+ A + NL K VR+ GG+ V LL T+ K L+ LA+
Sbjct: 56 VDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKXVALLNKTNVKFLAITTDCLQILAYG 115
Query: 69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
N E+K I+ L+ + R+ YE L+ ++ + K
Sbjct: 116 NQESKLIILASGGPQALVNIXRTYT----YE------KLLWTTSRVLK------------ 153
Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
+LS C S K IV+ G + L L P +L + + L
Sbjct: 154 -VLSVCSSN-------------------KPAIVEAGGXQALGLHLTDPSQRLVQNCLWTL 193
Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGG 247
L+ Q G G L L++LL S + ++ AA L L +N N +VGG
Sbjct: 194 RNLSDAATKQEGX--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGG 251
Query: 248 VQKL 251
++ L
Sbjct: 252 IEAL 255
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 100/247 (40%), Gaps = 28/247 (11%)
Query: 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFK 68
+V+ AA ++NL N K V GGI LV +L D + + A ALR L +
Sbjct: 223 NVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 282
Query: 69 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 124
+ E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 283 HQEAEXAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAI 341
Query: 125 QPVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG- 164
++ LL ++QR ++ G D IV RG
Sbjct: 342 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRIVIRGL 401
Query: 165 -AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 402 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 461
Query: 224 NAAFALY 230
AA L+
Sbjct: 462 YAAAVLF 468
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 2/185 (1%)
Query: 51 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 110
D + R AG L L+ + E I + +P L+ L S ++ + A+ + NL+
Sbjct: 15 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLH 73
Query: 111 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 170
K V AG LQ + LL+ + L A + + K+ I+ G + L+
Sbjct: 74 QEGAKXAVRLAGGLQKXVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 133
Query: 171 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 229
+ ++ + L ++ L L+ N+ I GG L L + L N + L
Sbjct: 134 NIXRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGXQALGLHLTDPSQRLVQNCLWTL 193
Query: 230 YGLAD 234
L+D
Sbjct: 194 RNLSD 198
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRF 438
L DVT VEG+RF AHR L A S F + G + +I +P + + FE +++F
Sbjct: 29 LCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVG--QADGELNITLPEEVTVKGFEPLIQF 86
Query: 439 IYTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 470
YT + ++ + ++ + + + ++ C
Sbjct: 87 AYTAKLILSKENVDEVCKCVEFLSVHNIEESC 118
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDI--EIPNIRWEVFELMMR 437
L D T ++ +F AHR L + S+ F A+ YR ++ + ++ + F+ ++
Sbjct: 22 LCDCTIVIGEFQFKAHRNVLASFSEYFGAI----YRSTSENNVFLDQSQVKADGFQKLLE 77
Query: 438 FIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 471
FIYTG++++ +++ +AAD +E + C+
Sbjct: 78 FIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCK 111
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRF 438
L DVT +VE + F AHR L A S+ F G + K+ + +P + F +++F
Sbjct: 32 LCDVTLIVERKEFRAHRAVLAACSEYFWQALVG--QTKNDLVVSLPEEVTARGFGPLLQF 89
Query: 439 IYTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 470
YT + ++ + ++++R A+ + L+ C
Sbjct: 90 AYTAKLLLSRENIREVIRCAEFLRMHNLEDSC 121
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMF-DGGYREKDARDIEIPNIRWEVFELMMRF 438
L+DV +V +F AH+ L+A S F ++F D R +++ P I E F +++ F
Sbjct: 29 LTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLD-PEINPEGFNILLDF 87
Query: 439 IYTGSVDV 446
+YT +++
Sbjct: 88 MYTSRLNL 95
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 382 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 441
D T V G F AH L S F++++ G + +P E+F L++ F YT
Sbjct: 26 DATLDVGGLVFKAHWSVLACCSHFFQSLYGDG----SGGSVVLPAGFAEIFGLLLDFFYT 81
Query: 442 GSVDVTLDIAQDLLRAADQYLLEGLKRLCE 471
G + +T +L AA + + LC+
Sbjct: 82 GHLALTSGNRDQVLLAARELRVPEAVELCQ 111
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
L+DV +V +F AH+ L+A S F ++F + + P I E F +++ F+
Sbjct: 32 LTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFCILLDFM 91
Query: 440 YTGSVDV 446
YT +++
Sbjct: 92 YTSRLNL 98
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 11 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 63
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 195 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 254
Query: 64 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 122
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 255 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDXG 314
Query: 123 ALQPVIGLLSS 133
A+ + L+ S
Sbjct: 315 AVSXLKNLIHS 325
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 11 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 63
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 188 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 247
Query: 64 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 122
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 248 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 307
Query: 123 ALQPVIGLLSS 133
A+ + L+ S
Sbjct: 308 AVSMLKNLIHS 318
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 11 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 63
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245
Query: 64 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 122
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 246 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDXG 305
Query: 123 ALQPVIGLLSS 133
A+ + L+ S
Sbjct: 306 AVSXLKNLIHS 316
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 11 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 63
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 361
Query: 64 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 122
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 362 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 421
Query: 123 ALQPVIGLLSS 133
A+ + L+ S
Sbjct: 422 AVSMLKNLIHS 432
>pdb|1XQS|A Chain A, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
pdb|1XQS|B Chain B, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
Length = 280
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 50/111 (45%)
Query: 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 67
A ++V +A AI+ L E + + G L+ ++ K++ +A L+ L
Sbjct: 121 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 180
Query: 68 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 118
+ E+K + + L+ ++R+E S H +G + +LV P +E
Sbjct: 181 GHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 231
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 11 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 63
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245
Query: 64 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 122
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 246 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 305
Query: 123 ALQPVIGLLSS 133
A+ + L+ S
Sbjct: 306 AVSMLKNLIHS 316
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 11 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 63
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245
Query: 64 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 122
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 246 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 305
Query: 123 ALQPVIGLLSS 133
A+ + L+ S
Sbjct: 306 AVSMLKNLIHS 316
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 382 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 441
D T V G F AH L S F+ ++ G + +P E+F L++ F YT
Sbjct: 27 DATLDVGGLVFKAHWSVLACCSHFFQRIYGDG----TGGSVVLPAGFAEIFGLLLDFFYT 82
Query: 442 GSVDVTLDIAQDLLRAADQYLLEGLKRLCE 471
G + +T +L AA + + LC+
Sbjct: 83 GHLALTSGNRDQVLLAAKELRVPEAVELCQ 112
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSL 221
A+ LIE+++ P V +R+ +A+ +GR+ ++ +A I ++ L PLL+ L S +
Sbjct: 409 AMPTLIELMKDPSVVVRDTTAWTVGRIC-ELLPEAAI-NDVYLAPLLQCLIEGLSAEPRV 466
Query: 222 QHNAAFALYGLADNEDNVAD 241
N +A LA+ AD
Sbjct: 467 ASNVCWAFSSLAEAAYEAAD 486
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSL 221
A+ LIE+++ P V +R+ +A+ +GR+ ++ +A I ++ L PLL+ L S +
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRIC-ELLPEAAI-NDVYLAPLLQCLIEGLSAEPRV 466
Query: 222 QHNAAFALYGLAD 234
N +A LA+
Sbjct: 467 ASNVCWAFSSLAE 479
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSL 221
A+ LIE+++ P V +R+ +A+ +GR+ ++ +A I ++ L PLL+ L S +
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRIC-ELLPEAAI-NDVYLAPLLQCLIEGLSAEPRV 466
Query: 222 QHNAAFALYGLADNEDNVAD 241
N +A LA+ AD
Sbjct: 467 ASNVCWAFSSLAEAAYEAAD 486
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSL 221
A+ LIE+++ P V +R+ +A+ +GR+ ++ +A I ++ L PLL+ L S +
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRIC-ELLPEAAI-NDVYLAPLLQCLIEGLSAEPRV 466
Query: 222 QHNAAFALYGLADNEDNVAD 241
N +A LA+ AD
Sbjct: 467 ASNVCWAFSSLAEAAYEAAD 486
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSL 221
A+ LIE+++ P V +R+ +A+ +GR+ + + +A I ++ L PLL+ L S +
Sbjct: 284 AMPTLIELMKDPSVVVRDTAAWTVGRICE-LLPEAAI-NDVYLAPLLQCLIEGLSAEPRV 341
Query: 222 QHNAAFALYGLADNEDNVAD 241
N +A LA+ AD
Sbjct: 342 ASNVCWAFSSLAEAAYEAAD 361
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%)
Query: 19 AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE 78
A+TNLA N S++ R+ E G+ + L + RAAA L L D K
Sbjct: 604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGN 663
Query: 79 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
+ + L L+ ED G + + S +++LA + ++ L
Sbjct: 664 NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTL 716
>pdb|1XQR|A Chain A, Crystal Structure Of The Hspbp1 Core Domain
pdb|1XQR|B Chain B, Crystal Structure Of The Hspbp1 Core Domain
Length = 296
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%)
Query: 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 67
A ++V +A AI+ L E + + G L + K++ +A L+ L
Sbjct: 137 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLXRAXQQQVQKLKVKSAFLLQNLLV 196
Query: 68 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 118
+ E+K + + L+ ++R+E S H +G + +LV P +E
Sbjct: 197 GHPEHKGTLCSXGXVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 247
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 2/144 (1%)
Query: 374 FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR--DIEIPNIRWEV 431
F + D +++G + L A+S R + + D IE+ I V
Sbjct: 25 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXV 84
Query: 432 FELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSE 491
++ +I++G + + D QD+++AAD LL LK LC + I+ EN + + +
Sbjct: 85 XREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFAL 144
Query: 492 AFHAISLRHTCILYIMEHFDKLST 515
+ + + Y+ HF +S+
Sbjct: 145 HYCLHHVHYLATEYLETHFRDVSS 168
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 214
A+ LIE+++ P V +R+ +A+ +GR+ ++ +A I ++ L PLL+ L
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRIC-ELLPEAAI-NDVYLAPLLQCL 456
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 14/144 (9%)
Query: 374 FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR--DIEIPNIRWEV 431
F + D +++G + L A+S R + + D IE+ I V
Sbjct: 25 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXV 84
Query: 432 FELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSE 491
++ +I++G + + D QD+++AAD LL LK LC + I+ EN
Sbjct: 85 XREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAEN--------- 135
Query: 492 AFHAISLRHTCILYIMEHFDKLST 515
I +R + Y + H L+T
Sbjct: 136 ---CIGIRDFALHYCLHHVHYLAT 156
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 438 FIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAIS 497
++ D+TL+ + + A+++L K + E+T D++ NV ++ E +A
Sbjct: 666 MMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDVAALNVDALTENQKA----- 720
Query: 498 LRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALT 539
LR I + D + R + I I+ E+ N AKA T
Sbjct: 721 LRRDVHKTIAKVTDDIGRRQTFNTAIAAIM-ELMNKLAKAPT 761
>pdb|1TE4|A Chain A, Solution Structure Of Mth187. Ontario Centre For
Structural Proteomics Target Mth0187_1_111; Northeast
Structural Genomics Target Tt740
Length = 131
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 224
A PL+E L + D ++R +A+ +G + + PL+KLL+ +G ++
Sbjct: 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQDER----------AVEPLIKLLEDDSGFVRSG 92
Query: 225 AAFAL 229
AA +L
Sbjct: 93 AARSL 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,137,261
Number of Sequences: 62578
Number of extensions: 529334
Number of successful extensions: 1883
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1374
Number of HSP's gapped (non-prelim): 292
length of query: 548
length of database: 14,973,337
effective HSP length: 104
effective length of query: 444
effective length of database: 8,465,225
effective search space: 3758559900
effective search space used: 3758559900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)