Query 008940
Match_columns 548
No_of_seqs 486 out of 3157
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 18:27:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 7.5E-33 1.6E-37 265.4 21.7 344 10-354 80-441 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 1.1E-31 2.5E-36 237.8 20.7 338 13-350 88-444 (526)
3 PLN03200 cellulose synthase-in 100.0 1.4E-30 3E-35 286.0 30.2 337 7-351 415-766 (2102)
4 PLN03200 cellulose synthase-in 100.0 4.8E-30 1E-34 281.7 29.6 345 7-351 200-682 (2102)
5 KOG4224 Armadillo repeat prote 100.0 1.3E-30 2.7E-35 233.2 15.5 309 11-356 141-453 (550)
6 KOG0166 Karyopherin (importin) 100.0 9.1E-29 2E-33 237.4 18.2 343 7-349 121-486 (514)
7 PHA02713 hypothetical protein; 100.0 1.3E-28 2.8E-33 252.0 17.6 160 370-531 15-176 (557)
8 KOG4224 Armadillo repeat prote 100.0 7E-28 1.5E-32 215.7 19.0 307 9-352 180-496 (550)
9 KOG4441 Proteins containing BT 100.0 3.2E-28 6.9E-33 247.6 16.6 160 370-529 26-185 (571)
10 PHA02790 Kelch-like protein; P 100.0 2E-28 4.4E-33 247.2 14.0 150 373-524 15-168 (480)
11 COG5064 SRP1 Karyopherin (impo 100.0 2.1E-28 4.5E-33 217.2 11.1 316 39-354 72-403 (526)
12 PHA03098 kelch-like protein; P 99.9 5.7E-27 1.2E-31 242.7 17.6 150 377-530 6-157 (534)
13 KOG4350 Uncharacterized conser 99.9 1.6E-25 3.4E-30 202.6 10.8 160 372-531 36-198 (620)
14 PF05804 KAP: Kinesin-associat 99.9 1.6E-20 3.4E-25 191.4 27.5 337 9-351 262-651 (708)
15 KOG4591 Uncharacterized conser 99.8 2E-20 4.3E-25 153.1 11.0 153 371-527 57-214 (280)
16 PF05804 KAP: Kinesin-associat 99.8 3.5E-18 7.5E-23 174.4 23.5 301 43-351 255-566 (708)
17 PF00651 BTB: BTB/POZ domain; 99.8 3E-19 6.5E-24 143.9 10.1 106 372-477 2-110 (111)
18 KOG2075 Topoisomerase TOP1-int 99.8 2.6E-18 5.7E-23 160.2 15.5 162 373-535 107-274 (521)
19 KOG1048 Neural adherens juncti 99.8 4E-18 8.7E-23 169.6 17.8 315 6-350 243-642 (717)
20 KOG2122 Beta-catenin-binding p 99.8 2.7E-17 5.8E-22 170.6 19.8 341 9-351 207-603 (2195)
21 KOG4682 Uncharacterized conser 99.7 1.2E-17 2.5E-22 152.0 12.7 158 369-527 58-219 (488)
22 KOG4199 Uncharacterized conser 99.7 1.1E-15 2.3E-20 136.6 24.8 304 9-351 120-446 (461)
23 KOG4199 Uncharacterized conser 99.7 1.1E-14 2.4E-19 130.2 23.9 305 15-356 78-410 (461)
24 KOG0783 Uncharacterized conser 99.7 1.3E-16 2.8E-21 157.4 12.7 162 378-539 708-876 (1267)
25 smart00225 BTB Broad-Complex, 99.7 1.5E-16 3.3E-21 122.8 9.5 90 382-471 1-90 (90)
26 PF10508 Proteasom_PSMB: Prote 99.7 2.5E-14 5.5E-19 145.0 25.2 322 7-358 88-429 (503)
27 KOG4500 Rho/Rac GTPase guanine 99.6 4.3E-14 9.3E-19 130.6 22.4 306 10-350 56-432 (604)
28 KOG1048 Neural adherens juncti 99.6 2.4E-15 5.1E-20 150.1 15.3 308 39-352 234-598 (717)
29 PF10508 Proteasom_PSMB: Prote 99.6 8.8E-14 1.9E-18 141.1 25.0 304 10-350 52-367 (503)
30 KOG2122 Beta-catenin-binding p 99.6 2.3E-14 4.9E-19 149.3 15.7 262 15-310 317-603 (2195)
31 KOG4500 Rho/Rac GTPase guanine 99.6 2.1E-13 4.6E-18 126.1 18.6 341 9-350 100-520 (604)
32 PRK09687 putative lyase; Provi 99.5 3.3E-13 7.2E-18 125.5 17.9 252 40-346 25-279 (280)
33 PF04826 Arm_2: Armadillo-like 99.5 5.1E-13 1.1E-17 121.2 17.2 240 35-299 9-253 (254)
34 PRK09687 putative lyase; Provi 99.5 5.5E-13 1.2E-17 124.0 17.7 225 81-350 24-251 (280)
35 PF04826 Arm_2: Armadillo-like 99.5 1E-12 2.2E-17 119.2 17.8 193 77-308 9-205 (254)
36 cd00256 VATPase_H VATPase_H, r 99.5 8E-12 1.7E-16 120.7 22.8 334 8-352 66-428 (429)
37 cd00020 ARM Armadillo/beta-cat 99.5 2E-12 4.4E-17 105.6 14.4 119 75-193 2-120 (120)
38 cd00020 ARM Armadillo/beta-cat 99.5 1.8E-12 3.9E-17 105.9 14.0 118 33-150 2-119 (120)
39 PRK13800 putative oxidoreducta 99.4 3.6E-11 7.7E-16 131.1 24.5 178 126-345 718-895 (897)
40 KOG1222 Kinesin associated pro 99.3 1.1E-10 2.4E-15 109.7 19.0 339 9-353 276-667 (791)
41 PRK13800 putative oxidoreducta 99.3 4.9E-10 1.1E-14 122.3 23.1 244 37-347 620-865 (897)
42 KOG2160 Armadillo/beta-catenin 99.3 8.6E-10 1.9E-14 101.5 19.9 191 6-197 93-286 (342)
43 KOG2759 Vacuolar H+-ATPase V1 99.3 1.4E-09 3E-14 101.4 21.2 342 9-352 32-441 (442)
44 KOG2023 Nuclear transport rece 99.2 1.2E-10 2.5E-15 113.7 14.3 270 80-350 128-464 (885)
45 KOG2160 Armadillo/beta-catenin 99.2 2.8E-09 6E-14 98.2 18.4 185 49-234 94-282 (342)
46 KOG3678 SARM protein (with ste 99.2 1.4E-09 3.1E-14 102.1 15.9 275 30-350 172-453 (832)
47 KOG1222 Kinesin associated pro 99.1 7.9E-10 1.7E-14 104.2 12.8 302 52-358 277-630 (791)
48 PF01602 Adaptin_N: Adaptin N 99.1 6.9E-09 1.5E-13 108.2 20.4 310 10-350 20-334 (526)
49 KOG2171 Karyopherin (importin) 99.1 2.7E-07 5.8E-12 96.9 30.3 408 13-475 326-798 (1075)
50 KOG1293 Proteins containing ar 99.1 1.5E-08 3.2E-13 99.6 18.7 343 8-351 21-492 (678)
51 KOG2171 Karyopherin (importin) 99.1 5.4E-09 1.2E-13 109.1 16.7 332 7-351 48-420 (1075)
52 KOG2023 Nuclear transport rece 99.0 4.5E-09 9.7E-14 102.9 14.0 296 11-351 143-507 (885)
53 PF03224 V-ATPase_H_N: V-ATPas 99.0 3.6E-09 7.9E-14 101.3 13.0 233 15-249 29-286 (312)
54 KOG0168 Putative ubiquitin fus 99.0 1.3E-08 2.8E-13 102.4 16.2 257 41-331 170-437 (1051)
55 PF01602 Adaptin_N: Adaptin N 99.0 6.7E-09 1.5E-13 108.3 14.6 312 7-350 90-407 (526)
56 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.8E-08 3.9E-13 96.5 15.9 214 8-224 69-304 (312)
57 KOG0511 Ankyrin repeat protein 99.0 5.6E-09 1.2E-13 95.2 10.9 139 390-529 301-449 (516)
58 cd00256 VATPase_H VATPase_H, r 98.9 1.1E-07 2.4E-12 92.4 20.0 263 10-307 115-424 (429)
59 KOG1293 Proteins containing ar 98.9 8.7E-08 1.9E-12 94.4 18.9 309 9-350 66-534 (678)
60 KOG0168 Putative ubiquitin fus 98.9 1.8E-07 3.9E-12 94.5 20.1 202 9-215 181-390 (1051)
61 KOG1241 Karyopherin (importin) 98.9 1.7E-06 3.6E-11 86.8 24.7 306 11-353 145-481 (859)
62 PTZ00429 beta-adaptin; Provisi 98.8 6.6E-07 1.4E-11 93.8 22.8 258 39-351 69-328 (746)
63 KOG0946 ER-Golgi vesicle-tethe 98.8 1.8E-06 3.9E-11 86.9 22.4 275 7-311 34-349 (970)
64 KOG2973 Uncharacterized conser 98.7 1.5E-06 3.3E-11 78.1 17.8 291 41-349 6-315 (353)
65 KOG2973 Uncharacterized conser 98.7 3E-06 6.5E-11 76.2 17.9 235 6-248 13-287 (353)
66 KOG1517 Guanine nucleotide bin 98.7 1E-06 2.2E-11 91.1 16.6 181 55-235 487-672 (1387)
67 KOG2759 Vacuolar H+-ATPase V1 98.6 3.6E-06 7.9E-11 79.1 18.2 262 11-308 129-438 (442)
68 KOG4413 26S proteasome regulat 98.6 3.1E-06 6.6E-11 76.7 17.0 281 38-350 82-378 (524)
69 KOG0212 Uncharacterized conser 98.6 2.4E-06 5.3E-11 82.8 16.7 312 37-353 83-410 (675)
70 PTZ00429 beta-adaptin; Provisi 98.6 1.9E-05 4.2E-10 83.1 24.8 284 40-350 107-398 (746)
71 KOG4646 Uncharacterized conser 98.6 5.4E-07 1.2E-11 70.5 9.3 131 39-171 17-148 (173)
72 KOG3678 SARM protein (with ste 98.6 1.3E-06 2.7E-11 82.7 13.6 172 74-248 174-350 (832)
73 KOG4413 26S proteasome regulat 98.6 2.3E-05 4.9E-10 71.2 20.9 313 11-356 97-446 (524)
74 KOG2734 Uncharacterized conser 98.5 1.6E-05 3.6E-10 74.9 19.7 245 4-250 92-365 (536)
75 KOG0946 ER-Golgi vesicle-tethe 98.5 2.3E-05 5E-10 79.1 21.9 287 39-351 23-348 (970)
76 KOG1517 Guanine nucleotide bin 98.5 3.5E-06 7.6E-11 87.3 16.2 223 13-235 487-733 (1387)
77 TIGR02270 conserved hypothetic 98.5 2.7E-05 5.9E-10 76.4 21.2 240 39-351 55-298 (410)
78 KOG0783 Uncharacterized conser 98.4 3.1E-07 6.8E-12 92.3 6.0 94 377-470 555-681 (1267)
79 KOG1241 Karyopherin (importin) 98.4 1.4E-05 3E-10 80.4 16.8 299 9-352 103-438 (859)
80 KOG2716 Polymerase delta-inter 98.4 3.5E-06 7.6E-11 74.0 10.3 94 383-477 7-104 (230)
81 KOG1242 Protein containing ada 98.3 8.7E-06 1.9E-10 80.5 13.3 331 6-353 106-448 (569)
82 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00022 4.7E-09 69.3 22.8 289 10-306 39-362 (371)
83 PF14664 RICTOR_N: Rapamycin-i 98.3 6.7E-05 1.4E-09 72.8 18.1 192 17-214 4-197 (371)
84 KOG1062 Vesicle coat complex A 98.2 0.00013 2.8E-09 74.2 19.6 293 43-351 184-546 (866)
85 KOG1789 Endocytosis protein RM 98.2 0.00054 1.2E-08 71.7 23.0 278 11-291 1740-2142(2235)
86 COG5369 Uncharacterized conser 98.2 1.9E-05 4.2E-10 76.3 11.6 290 15-306 408-739 (743)
87 KOG4646 Uncharacterized conser 98.2 1.5E-05 3.2E-10 62.6 8.6 118 8-127 29-146 (173)
88 PF10165 Ric8: Guanine nucleot 98.1 5.9E-05 1.3E-09 75.6 14.3 280 16-313 1-342 (446)
89 KOG1061 Vesicle coat complex A 98.1 8E-05 1.7E-09 75.6 14.9 319 5-352 95-418 (734)
90 KOG1062 Vesicle coat complex A 98.1 0.0003 6.6E-09 71.6 18.6 68 40-112 144-211 (866)
91 KOG2838 Uncharacterized conser 98.1 2.8E-06 6.1E-11 74.4 3.6 97 390-486 261-396 (401)
92 PF00514 Arm: Armadillo/beta-c 98.1 5.7E-06 1.2E-10 52.2 4.1 41 27-67 1-41 (41)
93 KOG2734 Uncharacterized conser 98.1 0.00031 6.7E-09 66.6 17.0 240 56-330 102-371 (536)
94 PF00514 Arm: Armadillo/beta-c 98.0 6.2E-06 1.3E-10 52.0 3.8 41 69-109 1-41 (41)
95 PF10165 Ric8: Guanine nucleot 98.0 0.0018 3.9E-08 65.1 23.2 287 58-351 1-339 (446)
96 KOG1059 Vesicle coat complex A 98.0 0.00058 1.3E-08 68.7 18.8 209 7-236 155-367 (877)
97 PF02214 BTB_2: BTB/POZ domain 98.0 1.3E-05 2.8E-10 61.6 5.4 87 383-470 1-94 (94)
98 COG5215 KAP95 Karyopherin (imp 98.0 0.00034 7.5E-09 68.4 15.8 256 52-352 148-440 (858)
99 KOG0213 Splicing factor 3b, su 98.0 0.00012 2.6E-09 73.6 13.0 266 7-330 810-1081(1172)
100 COG5231 VMA13 Vacuolar H+-ATPa 98.0 0.00016 3.4E-09 65.6 12.5 251 95-350 123-429 (432)
101 COG5369 Uncharacterized conser 98.0 0.00013 2.8E-09 70.8 12.6 188 56-243 407-603 (743)
102 KOG1824 TATA-binding protein-i 98.0 0.0014 3E-08 68.2 20.6 162 165-351 858-1038(1233)
103 TIGR02270 conserved hypothetic 98.0 0.0012 2.5E-08 65.1 19.6 210 40-309 88-297 (410)
104 COG1413 FOG: HEAT repeat [Ener 97.9 0.00089 1.9E-08 65.3 18.9 156 38-236 43-211 (335)
105 COG5215 KAP95 Karyopherin (imp 97.9 0.00064 1.4E-08 66.6 17.0 303 6-352 143-482 (858)
106 PF13646 HEAT_2: HEAT repeats; 97.9 4.2E-05 9E-10 58.1 7.0 86 40-147 1-88 (88)
107 PF05536 Neurochondrin: Neuroc 97.9 0.00078 1.7E-08 69.2 18.1 194 40-236 7-215 (543)
108 KOG0212 Uncharacterized conser 97.9 0.0002 4.3E-09 70.0 12.6 328 10-350 98-445 (675)
109 KOG1240 Protein kinase contain 97.9 0.00022 4.8E-09 75.6 13.7 286 9-351 436-727 (1431)
110 KOG1077 Vesicle coat complex A 97.9 0.011 2.3E-07 59.8 24.3 105 82-196 113-219 (938)
111 PF07707 BACK: BTB And C-termi 97.9 3.5E-05 7.5E-10 60.6 6.1 50 483-532 1-50 (103)
112 PF12348 CLASP_N: CLASP N term 97.9 0.00032 6.9E-09 64.2 13.2 181 11-197 22-210 (228)
113 KOG2838 Uncharacterized conser 97.9 2.4E-05 5.2E-10 68.7 5.2 88 376-463 126-218 (401)
114 PF12348 CLASP_N: CLASP N term 97.9 0.00015 3.2E-09 66.4 10.9 182 48-235 17-207 (228)
115 PF05536 Neurochondrin: Neuroc 97.8 0.0019 4E-08 66.4 19.5 239 81-350 6-262 (543)
116 COG1413 FOG: HEAT repeat [Ener 97.8 0.00055 1.2E-08 66.8 14.9 199 80-349 43-242 (335)
117 KOG1824 TATA-binding protein-i 97.8 0.0005 1.1E-08 71.3 14.4 292 49-351 581-888 (1233)
118 KOG1987 Speckle-type POZ prote 97.8 2.3E-05 5.1E-10 74.9 4.8 131 389-519 109-244 (297)
119 PF09759 Atx10homo_assoc: Spin 97.8 8.4E-05 1.8E-09 56.6 6.7 68 12-79 2-71 (102)
120 KOG1242 Protein containing ada 97.8 0.0016 3.4E-08 65.0 16.9 254 46-349 224-483 (569)
121 COG5240 SEC21 Vesicle coat com 97.8 0.0066 1.4E-07 59.8 20.6 270 45-351 271-557 (898)
122 PF13646 HEAT_2: HEAT repeats; 97.8 7.3E-05 1.6E-09 56.7 6.1 86 82-189 1-88 (88)
123 KOG1789 Endocytosis protein RM 97.7 0.0016 3.4E-08 68.4 17.0 242 8-253 1784-2137(2235)
124 KOG2259 Uncharacterized conser 97.7 0.00017 3.8E-09 71.6 9.7 284 43-351 203-513 (823)
125 COG5181 HSH155 U2 snRNP splice 97.7 0.00014 3E-09 71.7 8.8 262 81-352 605-873 (975)
126 KOG1059 Vesicle coat complex A 97.7 0.0017 3.6E-08 65.6 16.1 215 82-350 146-366 (877)
127 PF09759 Atx10homo_assoc: Spin 97.7 0.00021 4.6E-09 54.4 7.5 68 54-121 2-71 (102)
128 KOG4535 HEAT and armadillo rep 97.7 0.00048 1E-08 66.1 11.5 303 11-347 270-601 (728)
129 KOG0567 HEAT repeat-containing 97.7 0.0022 4.7E-08 57.1 14.7 219 42-348 40-279 (289)
130 KOG1077 Vesicle coat complex A 97.6 0.0029 6.2E-08 63.8 15.2 221 7-237 159-401 (938)
131 KOG1060 Vesicle coat complex A 97.6 0.0089 1.9E-07 61.2 18.8 273 39-351 72-352 (968)
132 KOG0213 Splicing factor 3b, su 97.5 0.00048 1E-08 69.5 9.8 213 9-237 854-1068(1172)
133 KOG2259 Uncharacterized conser 97.5 0.00074 1.6E-08 67.3 10.9 218 8-236 191-477 (823)
134 KOG1061 Vesicle coat complex A 97.5 0.00079 1.7E-08 68.7 11.2 181 39-234 50-231 (734)
135 KOG0915 Uncharacterized conser 97.5 0.0039 8.5E-08 68.2 16.8 318 13-350 974-1307(1702)
136 KOG3473 RNA polymerase II tran 97.5 0.0005 1.1E-08 50.1 6.9 74 388-462 25-111 (112)
137 KOG0211 Protein phosphatase 2A 97.5 0.0076 1.7E-07 63.4 18.4 332 4-349 245-586 (759)
138 KOG1060 Vesicle coat complex A 97.5 0.011 2.3E-07 60.7 18.1 276 40-352 110-461 (968)
139 PF13513 HEAT_EZ: HEAT-like re 97.4 0.00024 5.3E-09 48.2 4.6 55 136-191 1-55 (55)
140 COG5181 HSH155 U2 snRNP splice 97.4 0.0011 2.4E-08 65.6 10.3 214 9-238 659-874 (975)
141 smart00875 BACK BTB And C-term 97.4 0.00023 5E-09 55.5 4.8 48 483-530 1-48 (101)
142 COG5096 Vesicle coat complex, 97.4 0.014 3E-07 61.1 18.6 163 10-194 33-196 (757)
143 PF13513 HEAT_EZ: HEAT-like re 97.4 0.00032 7E-09 47.5 4.9 55 52-107 1-55 (55)
144 KOG3036 Protein involved in ce 97.3 0.018 4E-07 50.7 15.7 175 14-193 97-291 (293)
145 COG5231 VMA13 Vacuolar H+-ATPa 97.3 0.0057 1.2E-07 55.9 13.1 228 46-308 157-428 (432)
146 smart00185 ARM Armadillo/beta- 97.3 0.0005 1.1E-08 43.2 4.7 39 28-66 2-40 (41)
147 smart00185 ARM Armadillo/beta- 97.3 0.00051 1.1E-08 43.2 4.7 39 70-108 2-40 (41)
148 COG5096 Vesicle coat complex, 97.2 0.0088 1.9E-07 62.4 15.0 168 47-235 28-196 (757)
149 PF11822 DUF3342: Domain of un 97.2 0.00094 2E-08 61.6 7.1 87 390-478 14-104 (317)
150 smart00512 Skp1 Found in Skp1 97.2 0.002 4.3E-08 50.4 7.5 75 388-463 10-104 (104)
151 PF06025 DUF913: Domain of Unk 97.1 0.012 2.7E-07 57.4 14.2 215 15-239 3-237 (379)
152 PF11841 DUF3361: Domain of un 97.1 0.018 4E-07 47.8 12.9 125 32-157 5-137 (160)
153 PF04078 Rcd1: Cell differenti 97.1 0.056 1.2E-06 48.8 16.8 222 8-232 7-260 (262)
154 KOG1240 Protein kinase contain 97.1 0.0063 1.4E-07 65.2 12.3 248 51-351 436-687 (1431)
155 KOG3036 Protein involved in ce 97.1 0.19 4E-06 44.6 18.9 195 7-202 35-256 (293)
156 KOG1943 Beta-tubulin folding c 97.0 0.025 5.4E-07 60.2 15.3 256 80-349 341-611 (1133)
157 KOG0211 Protein phosphatase 2A 97.0 0.017 3.7E-07 60.9 14.2 291 15-350 374-665 (759)
158 PF04078 Rcd1: Cell differenti 96.9 0.013 2.8E-07 52.7 11.2 170 15-191 69-260 (262)
159 PF12717 Cnd1: non-SMC mitotic 96.9 0.055 1.2E-06 47.1 15.0 91 10-110 2-93 (178)
160 KOG1724 SCF ubiquitin ligase, 96.9 0.0091 2E-07 50.0 9.3 90 388-478 13-127 (162)
161 KOG0567 HEAT repeat-containing 96.9 0.055 1.2E-06 48.5 14.4 169 36-236 65-251 (289)
162 PF08569 Mo25: Mo25-like; Int 96.9 0.1 2.2E-06 50.0 17.3 206 32-238 70-287 (335)
163 PF12755 Vac14_Fab1_bd: Vacuol 96.8 0.0061 1.3E-07 46.5 7.1 92 139-232 3-94 (97)
164 KOG2714 SETA binding protein S 96.8 0.0055 1.2E-07 58.2 8.1 86 382-468 12-102 (465)
165 PF12755 Vac14_Fab1_bd: Vacuol 96.8 0.011 2.4E-07 45.2 8.3 90 55-149 3-94 (97)
166 PF11698 V-ATPase_H_C: V-ATPas 96.7 0.00096 2.1E-08 52.3 2.1 75 278-352 42-118 (119)
167 PF12717 Cnd1: non-SMC mitotic 96.7 0.091 2E-06 45.7 14.7 93 93-194 1-93 (178)
168 KOG1078 Vesicle coat complex C 96.7 0.076 1.7E-06 54.7 15.5 269 45-349 252-532 (865)
169 KOG2715 Uncharacterized conser 96.6 0.036 7.8E-07 45.4 10.4 163 381-544 21-192 (210)
170 COG5240 SEC21 Vesicle coat com 96.6 0.16 3.5E-06 50.6 16.6 248 10-308 278-555 (898)
171 KOG0915 Uncharacterized conser 96.6 0.0037 8.1E-08 68.4 6.1 263 42-349 822-1110(1702)
172 PF08569 Mo25: Mo25-like; Int 96.6 0.038 8.1E-07 52.9 12.1 204 116-350 70-284 (335)
173 PF11841 DUF3361: Domain of un 96.5 0.047 1E-06 45.4 11.0 124 73-197 4-135 (160)
174 KOG1058 Vesicle coat complex C 96.5 0.15 3.3E-06 52.4 16.5 244 10-311 220-466 (948)
175 KOG2032 Uncharacterized conser 96.5 0.038 8.2E-07 53.9 11.5 263 79-349 253-531 (533)
176 KOG4151 Myosin assembly protei 96.5 0.11 2.3E-06 53.9 15.3 201 27-233 493-698 (748)
177 PF11698 V-ATPase_H_C: V-ATPas 96.4 0.0051 1.1E-07 48.3 4.5 71 39-109 44-115 (119)
178 KOG1665 AFH1-interacting prote 96.4 0.012 2.6E-07 50.7 7.0 90 383-472 11-105 (302)
179 KOG2062 26S proteasome regulat 96.4 0.074 1.6E-06 54.4 13.2 134 165-351 520-655 (929)
180 KOG1058 Vesicle coat complex C 96.3 0.082 1.8E-06 54.3 13.3 289 38-351 134-465 (948)
181 PF03931 Skp1_POZ: Skp1 family 96.3 0.013 2.8E-07 40.6 5.7 51 388-441 9-59 (62)
182 PF13764 E3_UbLigase_R4: E3 ub 96.3 0.77 1.7E-05 49.3 20.8 216 32-251 111-381 (802)
183 PF04063 DUF383: Domain of unk 96.2 0.045 9.8E-07 47.7 9.8 114 90-204 5-143 (192)
184 PF12719 Cnd3: Nuclear condens 96.2 0.24 5.2E-06 47.2 15.7 150 80-237 26-188 (298)
185 KOG2956 CLIP-associating prote 96.2 0.16 3.4E-06 49.5 13.9 175 9-193 300-477 (516)
186 KOG4151 Myosin assembly protei 96.2 0.081 1.7E-06 54.8 12.5 240 68-345 492-737 (748)
187 PF08045 CDC14: Cell division 96.1 0.057 1.2E-06 49.1 10.1 102 9-110 104-208 (257)
188 KOG4535 HEAT and armadillo rep 96.1 0.02 4.4E-07 55.4 7.2 223 52-309 363-604 (728)
189 KOG1967 DNA repair/transcripti 96.0 0.12 2.5E-06 54.4 12.9 190 81-305 816-1021(1030)
190 PF12460 MMS19_C: RNAPII trans 95.9 0.078 1.7E-06 53.2 11.5 175 10-195 204-396 (415)
191 PF11701 UNC45-central: Myosin 95.9 0.061 1.3E-06 45.6 9.1 147 81-232 4-157 (157)
192 PF05918 API5: Apoptosis inhib 95.9 0.9 2E-05 46.4 18.6 87 12-108 38-124 (556)
193 PF12719 Cnd3: Nuclear condens 95.9 0.14 2.9E-06 48.9 12.4 171 38-217 26-209 (298)
194 KOG4653 Uncharacterized conser 95.9 0.21 4.6E-06 52.2 14.0 182 44-235 733-919 (982)
195 PF05004 IFRD: Interferon-rela 95.8 0.6 1.3E-05 44.5 16.4 181 9-193 56-257 (309)
196 PF05004 IFRD: Interferon-rela 95.7 0.54 1.2E-05 44.9 15.4 190 42-233 47-256 (309)
197 KOG1991 Nuclear transport rece 95.7 2.1 4.5E-05 46.0 20.4 306 9-353 431-761 (1010)
198 PF05918 API5: Apoptosis inhib 95.7 0.085 1.8E-06 53.5 10.3 129 43-190 28-159 (556)
199 PF08045 CDC14: Cell division 95.6 0.19 4.1E-06 45.8 11.3 99 52-150 105-206 (257)
200 PF02985 HEAT: HEAT repeat; I 95.5 0.02 4.4E-07 33.2 3.2 28 82-109 2-29 (31)
201 PF02985 HEAT: HEAT repeat; I 95.4 0.028 6E-07 32.6 3.6 29 166-194 2-30 (31)
202 KOG0511 Ankyrin repeat protein 95.4 0.05 1.1E-06 50.9 6.9 88 381-470 150-238 (516)
203 PF06025 DUF913: Domain of Unk 95.3 2.3 5.1E-05 41.8 18.5 150 11-161 75-242 (379)
204 KOG1248 Uncharacterized conser 95.2 0.29 6.2E-06 53.2 12.7 222 5-234 663-898 (1176)
205 PF12460 MMS19_C: RNAPII trans 95.2 1.7 3.8E-05 43.6 18.0 72 280-351 324-396 (415)
206 PF04063 DUF383: Domain of unk 95.2 0.061 1.3E-06 46.9 6.6 127 175-330 6-157 (192)
207 KOG2062 26S proteasome regulat 95.1 0.25 5.5E-06 50.7 11.4 156 42-222 523-682 (929)
208 KOG1991 Nuclear transport rece 95.0 1 2.2E-05 48.3 15.7 155 15-175 391-558 (1010)
209 KOG1943 Beta-tubulin folding c 95.0 0.86 1.9E-05 49.2 15.1 301 6-350 554-882 (1133)
210 PF12530 DUF3730: Protein of u 94.9 2.1 4.6E-05 39.0 16.2 136 41-192 3-150 (234)
211 PF11701 UNC45-central: Myosin 94.7 0.33 7.1E-06 41.2 9.6 147 38-190 3-156 (157)
212 KOG0414 Chromosome condensatio 94.7 0.26 5.7E-06 53.4 10.6 148 8-176 935-1083(1251)
213 KOG1832 HIV-1 Vpr-binding prot 94.7 4 8.6E-05 43.4 18.4 158 160-318 597-783 (1516)
214 KOG4653 Uncharacterized conser 94.6 0.54 1.2E-05 49.4 12.4 214 8-232 739-962 (982)
215 KOG2274 Predicted importin 9 [ 94.5 1.4 3E-05 46.7 14.9 223 5-235 459-690 (1005)
216 KOG1078 Vesicle coat complex C 94.3 2.3 5E-05 44.5 15.9 237 84-352 68-314 (865)
217 KOG2956 CLIP-associating prote 94.3 1.7 3.8E-05 42.5 14.2 172 51-233 300-476 (516)
218 COG5098 Chromosome condensatio 94.3 0.71 1.5E-05 47.3 12.0 213 8-245 908-1124(1128)
219 KOG3665 ZYG-1-like serine/thre 94.2 1.7 3.6E-05 46.5 15.6 170 145-331 494-678 (699)
220 KOG1778 CREB binding protein/P 94.2 0.041 8.9E-07 51.7 3.2 139 382-521 28-169 (319)
221 KOG0414 Chromosome condensatio 94.1 0.62 1.3E-05 50.7 11.9 161 38-218 919-1084(1251)
222 KOG4464 Signaling protein RIC- 93.8 6.3 0.00014 38.1 16.6 133 42-175 49-198 (532)
223 KOG1243 Protein kinase [Genera 93.6 0.59 1.3E-05 48.1 10.3 152 77-237 327-479 (690)
224 COG5209 RCD1 Uncharacterized p 93.6 1.2 2.5E-05 39.1 10.6 142 15-158 119-274 (315)
225 KOG2933 Uncharacterized conser 93.6 0.51 1.1E-05 43.6 8.8 145 81-233 89-233 (334)
226 PF14668 RICTOR_V: Rapamycin-i 93.5 0.21 4.5E-06 35.7 5.0 67 181-247 4-71 (73)
227 KOG1967 DNA repair/transcripti 93.4 0.35 7.5E-06 51.1 8.4 151 38-189 867-1020(1030)
228 PRK14707 hypothetical protein; 93.4 9.2 0.0002 45.1 19.5 330 13-343 349-691 (2710)
229 KOG2999 Regulator of Rac1, req 93.4 1.3 2.9E-05 44.2 11.8 155 40-196 85-245 (713)
230 PRK14707 hypothetical protein; 93.3 4.6 0.0001 47.3 17.2 246 15-266 183-435 (2710)
231 PF11707 Npa1: Ribosome 60S bi 93.3 8.3 0.00018 37.3 18.7 158 82-239 58-242 (330)
232 PF06371 Drf_GBD: Diaphanous G 93.2 0.54 1.2E-05 41.2 8.5 108 41-150 69-186 (187)
233 KOG2032 Uncharacterized conser 93.0 2.4 5.1E-05 42.0 12.8 140 8-150 270-414 (533)
234 COG5116 RPN2 26S proteasome re 93.0 0.97 2.1E-05 45.2 10.3 124 80-219 551-676 (926)
235 PF06371 Drf_GBD: Diaphanous G 93.0 2.4 5.2E-05 37.1 12.3 110 81-192 67-186 (187)
236 PF13764 E3_UbLigase_R4: E3 ub 92.9 16 0.00035 39.6 20.1 124 75-199 112-264 (802)
237 COG5116 RPN2 26S proteasome re 92.7 0.49 1.1E-05 47.3 7.9 125 87-233 523-649 (926)
238 KOG1243 Protein kinase [Genera 92.5 0.46 9.9E-06 48.9 7.7 186 35-232 327-513 (690)
239 PF01466 Skp1: Skp1 family, di 92.5 0.31 6.8E-06 35.6 5.0 49 446-494 11-62 (78)
240 KOG1566 Conserved protein Mo25 92.4 5.1 0.00011 37.3 13.4 205 116-350 73-287 (342)
241 PF14668 RICTOR_V: Rapamycin-i 92.4 0.48 1E-05 33.8 5.5 66 139-205 4-70 (73)
242 KOG1820 Microtubule-associated 92.3 5.6 0.00012 43.0 15.7 185 40-234 255-443 (815)
243 KOG2999 Regulator of Rac1, req 92.3 3 6.5E-05 41.8 12.5 143 10-154 97-245 (713)
244 KOG1820 Microtubule-associated 92.2 2.3 5E-05 45.8 12.8 171 11-193 268-443 (815)
245 KOG2274 Predicted importin 9 [ 91.8 21 0.00046 38.4 20.2 155 38-195 530-691 (1005)
246 COG5201 SKP1 SCF ubiquitin lig 91.8 2.1 4.5E-05 33.7 8.7 89 387-478 9-122 (158)
247 KOG1020 Sister chromatid cohes 91.8 5.9 0.00013 44.9 15.2 144 38-195 816-962 (1692)
248 PF07814 WAPL: Wings apart-lik 91.7 6.1 0.00013 38.8 14.4 82 8-90 34-116 (361)
249 KOG1020 Sister chromatid cohes 91.6 2.5 5.4E-05 47.6 12.3 144 81-234 817-960 (1692)
250 KOG1566 Conserved protein Mo25 91.5 12 0.00026 35.0 17.3 202 32-236 73-288 (342)
251 KOG1248 Uncharacterized conser 91.5 2.3 4.9E-05 46.7 11.7 180 10-194 711-899 (1176)
252 PF10363 DUF2435: Protein of u 91.2 0.74 1.6E-05 34.7 5.9 83 41-133 6-88 (92)
253 KOG2933 Uncharacterized conser 90.7 1.3 2.8E-05 41.1 7.8 140 40-192 90-233 (334)
254 COG5098 Chromosome condensatio 90.5 6.4 0.00014 40.8 13.1 181 41-242 895-1084(1128)
255 KOG2137 Protein kinase [Signal 90.2 3.3 7.2E-05 43.0 11.1 137 160-334 385-522 (700)
256 COG5209 RCD1 Uncharacterized p 89.8 2.1 4.6E-05 37.6 8.0 145 55-200 117-275 (315)
257 PF12830 Nipped-B_C: Sister ch 89.4 12 0.00026 32.7 12.9 145 39-194 9-168 (187)
258 KOG2025 Chromosome condensatio 89.3 3.5 7.6E-05 42.7 10.3 105 37-147 84-189 (892)
259 KOG2611 Neurochondrin/leucine- 89.3 20 0.00043 35.7 14.8 130 84-216 15-163 (698)
260 PF13251 DUF4042: Domain of un 89.1 8.7 0.00019 33.3 11.4 143 54-196 2-177 (182)
261 KOG2025 Chromosome condensatio 89.0 3.6 7.9E-05 42.6 10.2 103 164-303 85-188 (892)
262 KOG3665 ZYG-1-like serine/thre 88.5 3.1 6.7E-05 44.6 10.0 156 19-175 494-678 (699)
263 KOG0301 Phospholipase A2-activ 88.3 16 0.00034 37.9 13.9 166 46-216 552-727 (745)
264 PF08506 Cse1: Cse1; InterPro 88.2 27 0.00058 34.4 15.6 150 116-303 204-370 (370)
265 PF12031 DUF3518: Domain of un 88.0 1.4 3E-05 39.4 5.8 82 12-94 140-230 (257)
266 PF10363 DUF2435: Protein of u 87.7 0.65 1.4E-05 35.0 3.3 71 280-351 4-74 (92)
267 PF11707 Npa1: Ribosome 60S bi 87.7 22 0.00047 34.5 14.5 158 40-197 58-241 (330)
268 PF08167 RIX1: rRNA processing 87.4 4.6 0.0001 34.5 8.7 111 39-153 26-145 (165)
269 PF12031 DUF3518: Domain of un 87.3 2.6 5.7E-05 37.7 7.1 82 53-135 139-229 (257)
270 PF08216 CTNNBL: Catenin-beta- 87.3 0.6 1.3E-05 35.9 2.8 53 3-56 53-105 (108)
271 PF14225 MOR2-PAG1_C: Cell mor 87.2 25 0.00054 32.6 14.7 159 179-348 77-253 (262)
272 PF14500 MMS19_N: Dos2-interac 87.1 26 0.00056 32.6 15.5 150 41-196 2-156 (262)
273 COG5218 YCG1 Chromosome conden 86.8 29 0.00063 35.5 14.6 107 80-195 91-198 (885)
274 PF07814 WAPL: Wings apart-lik 86.7 34 0.00073 33.6 15.7 91 40-132 23-116 (361)
275 PF12530 DUF3730: Protein of u 86.1 27 0.00058 31.9 15.5 129 6-150 11-150 (234)
276 PF14726 RTTN_N: Rotatin, an a 86.1 5.7 0.00012 30.3 7.5 94 11-105 2-96 (98)
277 PF11822 DUF3342: Domain of un 86.0 0.54 1.2E-05 43.9 2.3 55 476-530 70-125 (317)
278 PF08324 PUL: PUL domain; Int 85.3 7.5 0.00016 36.3 9.9 159 43-203 68-241 (268)
279 KOG2137 Protein kinase [Signal 85.3 17 0.00037 38.1 12.6 133 80-219 389-522 (700)
280 PF01347 Vitellogenin_N: Lipop 85.2 18 0.0004 38.6 13.9 168 82-305 397-586 (618)
281 KOG1832 HIV-1 Vpr-binding prot 85.2 12 0.00025 40.2 11.4 167 71-248 592-787 (1516)
282 PF08167 RIX1: rRNA processing 85.0 3.7 8E-05 35.1 6.9 116 164-308 25-143 (165)
283 PF11865 DUF3385: Domain of un 84.8 5.7 0.00012 33.7 7.9 143 39-192 11-156 (160)
284 COG5218 YCG1 Chromosome conden 84.7 11 0.00024 38.3 10.7 71 164-234 91-161 (885)
285 PF11864 DUF3384: Domain of un 83.6 56 0.0012 33.5 17.8 71 279-349 250-330 (464)
286 PF01347 Vitellogenin_N: Lipop 83.6 9.9 0.00021 40.6 11.0 130 42-190 435-586 (618)
287 KOG2611 Neurochondrin/leucine- 82.5 23 0.0005 35.2 11.6 131 168-331 15-163 (698)
288 KOG2676 Uncharacterized conser 82.2 1.6 3.6E-05 41.0 3.8 64 16-79 376-441 (478)
289 PF14726 RTTN_N: Rotatin, an a 81.8 14 0.00031 28.2 8.0 92 53-145 2-94 (98)
290 PF13251 DUF4042: Domain of un 81.7 28 0.00062 30.2 10.9 156 180-351 2-176 (182)
291 COG5656 SXM1 Importin, protein 81.2 26 0.00057 36.9 12.0 150 121-272 407-570 (970)
292 KOG1788 Uncharacterized conser 80.9 50 0.0011 36.5 14.1 263 59-330 663-960 (2799)
293 KOG1788 Uncharacterized conser 80.8 29 0.00064 38.1 12.4 231 17-253 663-957 (2799)
294 KOG1949 Uncharacterized conser 80.7 27 0.00058 36.6 11.8 144 41-192 177-330 (1005)
295 KOG1822 Uncharacterized conser 80.7 98 0.0021 36.8 17.0 249 82-350 878-1128(2067)
296 PF11865 DUF3385: Domain of un 80.3 14 0.00031 31.3 8.6 143 81-232 11-155 (160)
297 KOG3840 Uncharaterized conserv 78.8 3 6.6E-05 38.2 4.2 86 379-464 94-185 (438)
298 PF14500 MMS19_N: Dos2-interac 77.9 47 0.001 30.9 11.9 148 83-235 2-154 (262)
299 cd03568 VHS_STAM VHS domain fa 75.9 8.8 0.00019 31.9 5.9 71 39-109 38-110 (144)
300 KOG2723 Uncharacterized conser 75.0 8.1 0.00018 34.4 5.7 94 379-473 6-105 (221)
301 PF08324 PUL: PUL domain; Int 74.6 15 0.00033 34.3 8.0 106 50-156 122-236 (268)
302 KOG0301 Phospholipase A2-activ 74.4 1.2E+02 0.0025 31.9 14.1 159 11-175 559-727 (745)
303 PF11864 DUF3384: Domain of un 74.3 1.1E+02 0.0023 31.4 15.3 90 137-233 230-329 (464)
304 smart00638 LPD_N Lipoprotein N 74.1 1E+02 0.0023 32.5 15.0 174 40-234 313-509 (574)
305 cd03561 VHS VHS domain family; 74.0 13 0.00029 30.4 6.5 71 39-109 38-112 (133)
306 PF10521 DUF2454: Protein of u 73.9 33 0.00072 32.3 10.1 70 81-150 120-202 (282)
307 cd03561 VHS VHS domain family; 73.5 48 0.001 27.1 9.7 72 81-152 38-113 (133)
308 COG5656 SXM1 Importin, protein 73.2 42 0.0009 35.6 10.8 114 37-153 407-530 (970)
309 PF10521 DUF2454: Protein of u 72.0 39 0.00084 31.9 10.0 70 39-108 120-202 (282)
310 PF12231 Rif1_N: Rap1-interact 72.0 1.1E+02 0.0023 30.3 14.0 134 93-232 59-202 (372)
311 cd03569 VHS_Hrs_Vps27p VHS dom 71.5 12 0.00026 31.0 5.7 72 38-109 41-114 (142)
312 cd03567 VHS_GGA VHS domain fam 71.4 13 0.00028 30.6 5.8 70 39-108 39-115 (139)
313 smart00638 LPD_N Lipoprotein N 71.4 24 0.00051 37.4 9.5 131 42-191 397-543 (574)
314 cd03568 VHS_STAM VHS domain fa 70.4 13 0.00027 30.9 5.6 71 164-234 37-110 (144)
315 PF12054 DUF3535: Domain of un 70.1 52 0.0011 33.3 11.0 109 52-165 101-211 (441)
316 PF07707 BACK: BTB And C-termi 69.0 17 0.00037 27.8 5.9 60 452-511 2-75 (103)
317 cd08050 TAF6 TATA Binding Prot 68.4 54 0.0012 31.9 10.4 110 123-233 211-339 (343)
318 KOG2676 Uncharacterized conser 68.1 7 0.00015 37.0 3.9 64 58-121 376-441 (478)
319 cd03572 ENTH_epsin_related ENT 68.0 50 0.0011 26.4 8.2 88 17-109 22-119 (122)
320 PF14225 MOR2-PAG1_C: Cell mor 67.9 1E+02 0.0023 28.6 14.2 151 53-219 77-242 (262)
321 KOG0413 Uncharacterized conser 67.4 22 0.00047 38.6 7.7 126 52-194 945-1074(1529)
322 PF08216 CTNNBL: Catenin-beta- 66.9 3.9 8.5E-05 31.6 1.8 43 297-339 64-106 (108)
323 PF10274 ParcG: Parkin co-regu 66.4 77 0.0017 27.5 9.6 76 39-114 39-114 (183)
324 KOG0392 SNF2 family DNA-depend 66.4 58 0.0013 36.8 10.7 232 39-310 78-327 (1549)
325 PF01365 RYDR_ITPR: RIH domain 66.2 17 0.00038 32.3 6.2 117 29-150 34-168 (207)
326 KOG4464 Signaling protein RIC- 65.3 1.5E+02 0.0032 29.3 13.4 101 11-111 112-233 (532)
327 KOG0413 Uncharacterized conser 64.3 38 0.00082 37.0 8.6 128 7-150 942-1072(1529)
328 PF00651 BTB: BTB/POZ domain; 63.2 13 0.00028 28.9 4.3 31 479-509 80-110 (111)
329 cd03569 VHS_Hrs_Vps27p VHS dom 62.9 32 0.0007 28.5 6.6 71 80-150 41-113 (142)
330 KOG1949 Uncharacterized conser 62.9 75 0.0016 33.5 10.2 143 85-234 179-331 (1005)
331 cd03567 VHS_GGA VHS domain fam 61.9 25 0.00054 29.0 5.7 69 165-233 39-115 (139)
332 PF08389 Xpo1: Exportin 1-like 61.9 33 0.00073 28.2 6.9 52 11-67 3-54 (148)
333 PF08506 Cse1: Cse1; InterPro 59.9 1.8E+02 0.004 28.6 15.9 144 78-229 208-370 (370)
334 PF10274 ParcG: Parkin co-regu 59.8 1E+02 0.0022 26.8 9.1 75 81-155 39-113 (183)
335 smart00288 VHS Domain present 58.6 29 0.00064 28.3 5.7 70 39-108 38-110 (133)
336 KOG0891 DNA-dependent protein 58.6 2.3E+02 0.0049 35.4 14.6 266 43-348 486-762 (2341)
337 KOG2005 26S proteasome regulat 57.8 92 0.002 32.7 9.8 101 40-152 417-519 (878)
338 KOG2075 Topoisomerase TOP1-int 56.1 33 0.00072 34.1 6.3 45 477-524 184-228 (521)
339 PF13001 Ecm29: Proteasome sta 56.1 1.1E+02 0.0025 31.6 10.7 136 51-194 296-444 (501)
340 PF00790 VHS: VHS domain; Int 54.4 80 0.0017 26.0 7.7 71 39-109 43-118 (140)
341 PF06685 DUF1186: Protein of u 52.9 1.3E+02 0.0028 27.7 9.2 83 34-120 69-153 (249)
342 PLN03205 ATR interacting prote 52.4 2E+02 0.0044 28.2 10.6 108 39-146 324-441 (652)
343 PF12830 Nipped-B_C: Sister ch 52.0 1.6E+02 0.0035 25.6 11.3 73 81-158 9-81 (187)
344 smart00288 VHS Domain present 51.8 67 0.0014 26.2 6.7 70 81-150 38-110 (133)
345 KOG2149 Uncharacterized conser 50.3 84 0.0018 30.7 7.9 114 40-154 60-173 (393)
346 PF13001 Ecm29: Proteasome sta 49.7 74 0.0016 32.9 8.2 138 7-152 294-444 (501)
347 KOG0392 SNF2 family DNA-depend 49.4 67 0.0015 36.4 7.8 150 80-234 77-237 (1549)
348 KOG4231 Intracellular membrane 49.1 27 0.00058 35.0 4.5 65 170-234 334-399 (763)
349 KOG3713 Voltage-gated K+ chann 48.9 1.4E+02 0.003 30.2 9.2 94 381-476 31-139 (477)
350 KOG0891 DNA-dependent protein 48.8 1.5E+02 0.0033 36.7 11.3 197 43-241 570-770 (2341)
351 KOG2038 CAATT-binding transcri 48.5 3.9E+02 0.0084 29.0 15.3 102 39-150 305-408 (988)
352 PF01365 RYDR_ITPR: RIH domain 48.3 69 0.0015 28.5 6.9 119 71-194 34-170 (207)
353 KOG2549 Transcription initiati 47.3 3.4E+02 0.0074 28.0 11.9 139 85-234 212-370 (576)
354 KOG1525 Sister chromatid cohes 47.2 46 0.00099 38.2 6.5 147 38-193 259-405 (1266)
355 KOG4231 Intracellular membrane 46.7 17 0.00037 36.3 2.7 64 87-150 335-398 (763)
356 PF11791 Aconitase_B_N: Aconit 46.5 66 0.0014 26.7 5.6 28 166-193 96-123 (154)
357 KOG4350 Uncharacterized conser 44.8 17 0.00036 35.1 2.3 57 420-476 106-175 (620)
358 PF12783 Sec7_N: Guanine nucle 43.9 1.8E+02 0.0039 24.7 8.5 106 11-120 37-157 (168)
359 PF08389 Xpo1: Exportin 1-like 42.8 1.1E+02 0.0024 25.0 7.0 50 53-108 3-53 (148)
360 PF01603 B56: Protein phosphat 42.0 3.5E+02 0.0076 27.2 11.4 188 34-228 129-320 (409)
361 KOG1992 Nuclear export recepto 41.8 5.1E+02 0.011 28.4 14.0 125 53-194 308-436 (960)
362 KOG1848 Uncharacterized conser 41.2 1.9E+02 0.0041 33.4 9.7 99 91-194 853-959 (1610)
363 PF12726 SEN1_N: SEN1 N termin 40.9 3.6E+02 0.0079 29.5 12.2 138 43-192 446-584 (727)
364 PF00790 VHS: VHS domain; Int 40.8 66 0.0014 26.5 5.1 70 81-150 43-117 (140)
365 KOG4390 Voltage-gated A-type K 39.3 1.7E+02 0.0036 28.4 7.8 102 382-487 41-148 (632)
366 PF04388 Hamartin: Hamartin pr 38.0 1.7E+02 0.0037 31.5 8.9 58 93-150 81-139 (668)
367 PF09324 DUF1981: Domain of un 37.2 1.3E+02 0.0027 22.4 5.6 64 37-105 16-84 (86)
368 PF04869 Uso1_p115_head: Uso1 36.8 3.9E+02 0.0084 25.6 13.9 143 51-193 51-231 (312)
369 PF11791 Aconitase_B_N: Aconit 36.5 1.1E+02 0.0023 25.6 5.4 25 281-305 96-120 (154)
370 PF14663 RasGEF_N_2: Rapamycin 36.5 95 0.0021 24.6 5.2 39 81-120 9-47 (115)
371 PF12726 SEN1_N: SEN1 N termin 36.0 3E+02 0.0065 30.2 10.6 90 136-234 495-585 (727)
372 KOG1822 Uncharacterized conser 36.0 7.4E+02 0.016 30.2 13.4 110 43-155 881-992 (2067)
373 PF01466 Skp1: Skp1 family, di 35.9 97 0.0021 22.4 4.8 38 472-511 7-44 (78)
374 PF03130 HEAT_PBS: PBS lyase H 35.5 27 0.00058 19.2 1.4 26 54-90 1-26 (27)
375 PHA03098 kelch-like protein; P 35.2 88 0.0019 32.7 6.3 33 477-509 72-104 (534)
376 PF04869 Uso1_p115_head: Uso1 34.7 4.2E+02 0.0091 25.4 13.6 142 8-149 50-229 (312)
377 smart00567 EZ_HEAT E-Z type HE 34.5 50 0.0011 18.4 2.5 15 53-67 2-16 (30)
378 cd08050 TAF6 TATA Binding Prot 34.4 2.5E+02 0.0054 27.4 8.7 109 81-191 211-338 (343)
379 KOG2549 Transcription initiati 34.2 5.5E+02 0.012 26.6 11.0 138 43-192 212-369 (576)
380 KOG4524 Uncharacterized conser 34.1 1.2E+02 0.0025 33.5 6.6 96 38-133 803-900 (1014)
381 cd03565 VHS_Tom1 VHS domain fa 34.0 1.7E+02 0.0037 24.1 6.5 71 39-109 39-115 (141)
382 PF06012 DUF908: Domain of Unk 33.7 1.5E+02 0.0034 28.6 7.2 65 53-118 237-306 (329)
383 PF09324 DUF1981: Domain of un 33.0 84 0.0018 23.3 4.1 65 162-230 15-84 (86)
384 KOG1993 Nuclear transport rece 32.7 7E+02 0.015 27.3 17.8 94 11-109 502-601 (978)
385 PF04499 SAPS: SIT4 phosphatas 32.3 2.9E+02 0.0064 28.3 9.1 69 80-151 21-92 (475)
386 PF12074 DUF3554: Domain of un 32.2 4.8E+02 0.01 25.3 11.8 79 134-215 174-254 (339)
387 PHA02713 hypothetical protein; 32.0 65 0.0014 33.9 4.6 34 476-509 89-122 (557)
388 PF12463 DUF3689: Protein of u 31.2 4.7E+02 0.01 24.9 10.9 123 74-196 3-176 (303)
389 KOG1410 Nuclear transport rece 30.8 7E+02 0.015 26.7 17.7 242 90-351 16-286 (1082)
390 KOG1525 Sister chromatid cohes 30.0 9.7E+02 0.021 28.2 15.2 144 163-306 258-403 (1266)
391 PF12054 DUF3535: Domain of un 29.6 6.1E+02 0.013 25.8 15.6 207 136-352 101-345 (441)
392 PF06685 DUF1186: Protein of u 28.9 4.7E+02 0.01 24.1 13.0 110 38-172 31-161 (249)
393 PF14631 FancD2: Fanconi anaem 28.7 2.6E+02 0.0055 33.3 8.8 100 46-152 443-543 (1426)
394 PF04388 Hamartin: Hamartin pr 28.3 7.9E+02 0.017 26.6 12.0 59 135-193 81-140 (668)
395 COG5537 IRR1 Cohesin [Cell div 28.2 5.8E+02 0.013 26.8 10.0 132 9-150 288-421 (740)
396 PF12765 Cohesin_HEAT: HEAT re 28.1 59 0.0013 20.2 2.2 25 163-187 17-41 (42)
397 cd00197 VHS_ENTH_ANTH VHS, ENT 28.1 2.9E+02 0.0064 21.6 8.9 69 39-107 38-113 (115)
398 PF12463 DUF3689: Protein of u 27.4 5.5E+02 0.012 24.5 12.3 125 32-156 3-178 (303)
399 PF14663 RasGEF_N_2: Rapamycin 26.8 97 0.0021 24.5 3.7 38 165-202 9-46 (115)
400 PLN03076 ARF guanine nucleotid 26.8 5.1E+02 0.011 31.7 10.8 170 55-232 1109-1297(1780)
401 KOG2229 Protein required for a 26.7 2.5E+02 0.0054 28.6 7.1 126 10-145 34-160 (616)
402 KOG1992 Nuclear export recepto 26.7 8.6E+02 0.019 26.8 11.2 150 39-194 499-669 (960)
403 PF12783 Sec7_N: Guanine nucle 26.4 1.3E+02 0.0028 25.6 4.8 84 159-242 68-154 (168)
404 PRK09169 hypothetical protein; 26.2 1.4E+03 0.03 28.8 16.8 12 52-63 456-467 (2316)
405 PF07571 DUF1546: Protein of u 26.2 1.5E+02 0.0033 22.3 4.5 57 50-107 18-76 (92)
406 PHA02790 Kelch-like protein; P 25.8 1.3E+02 0.0027 31.1 5.4 33 445-477 119-151 (480)
407 KOG3533 Inositol 1,4,5-trispho 25.6 1.2E+03 0.025 27.6 14.2 67 12-78 1203-1283(2706)
408 PF14666 RICTOR_M: Rapamycin-i 24.9 5.2E+02 0.011 23.4 13.2 130 9-150 77-224 (226)
409 cd03565 VHS_Tom1 VHS domain fa 24.1 2.9E+02 0.0062 22.8 6.2 70 165-234 39-115 (141)
410 PF07571 DUF1546: Protein of u 24.1 1.6E+02 0.0036 22.1 4.4 58 176-233 18-77 (92)
411 PF07923 N1221: N1221-like pro 23.8 1.2E+02 0.0026 28.8 4.5 55 36-90 58-126 (293)
412 PRK09169 hypothetical protein; 23.8 1.5E+03 0.033 28.5 17.0 15 135-149 329-343 (2316)
413 KOG2149 Uncharacterized conser 23.8 5.1E+02 0.011 25.6 8.4 114 81-195 59-172 (393)
414 PF14631 FancD2: Fanconi anaem 23.5 2.9E+02 0.0063 32.9 8.1 109 80-194 431-543 (1426)
415 PF06012 DUF908: Domain of Unk 23.5 2.7E+02 0.0058 27.0 6.8 56 16-72 242-302 (329)
416 PLN03076 ARF guanine nucleotid 22.7 7.1E+02 0.015 30.6 11.0 133 9-149 1150-1297(1780)
417 KOG2199 Signal transducing ada 22.4 2.1E+02 0.0045 28.0 5.5 71 164-234 45-118 (462)
418 KOG1848 Uncharacterized conser 22.4 1.3E+03 0.029 27.2 12.1 159 50-217 854-1028(1610)
419 PF07923 N1221: N1221-like pro 22.2 46 0.001 31.6 1.3 54 277-330 58-126 (293)
420 PF12231 Rif1_N: Rap1-interact 22.0 7.7E+02 0.017 24.3 15.2 133 51-192 59-203 (372)
421 KOG2005 26S proteasome regulat 21.8 6.1E+02 0.013 27.1 8.9 87 99-197 622-708 (878)
422 KOG2011 Sister chromatid cohes 20.7 1.3E+03 0.028 26.4 15.2 249 2-304 161-431 (1048)
423 COG5537 IRR1 Cohesin [Cell div 20.4 9.1E+02 0.02 25.5 9.7 134 91-233 286-421 (740)
424 KOG4682 Uncharacterized conser 20.1 1.1E+02 0.0023 30.1 3.1 32 445-476 169-200 (488)
425 smart00875 BACK BTB And C-term 20.1 1.4E+02 0.003 22.3 3.5 25 453-477 3-27 (101)
426 KOG2229 Protein required for a 20.1 6.3E+02 0.014 26.0 8.3 133 41-186 19-159 (616)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-33 Score=265.38 Aligned_cols=344 Identities=22% Similarity=0.296 Sum_probs=292.7
Q ss_pred hHHHHHHHHHHHHHhh--hChhhHHHHHhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 10 NSVIRRAADAITNLAH--ENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
+..+..+...+..+.. .+|.....+. .|.++.+++.|.. .++.++..|+++|.|+++++.+....+++.|.++.++
T Consensus 80 ~~~q~~a~~~~rkllS~~~~ppi~~vi~-~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi 158 (514)
T KOG0166|consen 80 PQQQLTATQAFRKLLSKERNPPIDEVIQ-SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFI 158 (514)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHH-cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHH
Confidence 3446677777777752 4556666555 4999999999975 4599999999999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCCh-HHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGA 165 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 165 (548)
.++.+++..+++.|+|+|+|++.+++.+|+.+...|+++.|+.++...++ ...+.+.|+|.|+|++.......-.-..+
T Consensus 159 ~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~i 238 (514)
T KOG0166|consen 159 QLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPI 238 (514)
T ss_pred HHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999988776 78899999999999987444443344579
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCc-chHHHH
Q 008940 166 VRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED-NVADFI 243 (548)
Q Consensus 166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~ 243 (548)
+|.|..++.+.|+++...|+|++++|+.+... -..+++.|.++.|+.+|.+.++.++..|+.+++|++...+ ....++
T Consensus 239 Lp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi 318 (514)
T KOG0166|consen 239 LPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVI 318 (514)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHH
Confidence 99999999999999999999999999977765 4567788999999999999999999999999999977544 556667
Q ss_pred HhcCcccccccchhh----hhhhHHHH------HHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc--
Q 008940 244 RVGGVQKLQDGEFIV----QATKDCVA------KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-- 311 (548)
Q Consensus 244 ~~g~i~~L~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~-- 311 (548)
..|+++.|....... .....|+. ++.++++.+++++++|.|+.+|++++...|++|+|+++|++.+..
T Consensus 319 ~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~ 398 (514)
T KOG0166|consen 319 NSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPE 398 (514)
T ss_pred hcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHH
Confidence 889998876644422 22345553 456889999999999999999999999999999999999987544
Q ss_pred cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcccc
Q 008940 312 QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTL 354 (548)
Q Consensus 312 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 354 (548)
.-..+++.|.++.|+.+|.-.+.++...+..++.++....+..
T Consensus 399 qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~ 441 (514)
T KOG0166|consen 399 QIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAE 441 (514)
T ss_pred HHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHh
Confidence 4478999999999999998888888888889999887765443
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-31 Score=237.80 Aligned_cols=338 Identities=21% Similarity=0.250 Sum_probs=279.8
Q ss_pred HHHHHHHHHHH-hhhChhhHHHHHhcCCchHHHHhh-ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc
Q 008940 13 IRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 90 (548)
Q Consensus 13 ~~~a~~~L~~l-~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~ 90 (548)
+.+|..-...+ +++...--..+++.|.+|.+++++ +....-.+..|+++|.|++++.......+++.|.+|.++++|.
T Consensus 88 q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~ 167 (526)
T COG5064 88 QLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLS 167 (526)
T ss_pred HHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHc
Confidence 34444444444 443333344578899999999999 4556778999999999999998889999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCCh--HHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940 91 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSDCKVHIVQRGAVRP 168 (548)
Q Consensus 91 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~ 168 (548)
+++.+++++++|+|+|++.+++.+|+.+.+.|++..++.++.++.. .+.+++.|+|+|||++.......-.-...+|.
T Consensus 168 s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpi 247 (526)
T COG5064 168 STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPI 247 (526)
T ss_pred CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987665 78899999999999886554444334468899
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCcch-hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-CcchHHHHHhc
Q 008940 169 LIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVG 246 (548)
Q Consensus 169 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~g 246 (548)
|.+++-+.|+++...|+|+++.|+..+..+ ..+.+.|....|+++|.+++..++..++..++|+... +.....++.+|
T Consensus 248 L~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G 327 (526)
T COG5064 248 LAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCG 327 (526)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecc
Confidence 999999999999999999999999887664 5567778888899999999999999999999999765 45556677889
Q ss_pred Ccccccccch---hhhhhhHHH------HHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc----cc
Q 008940 247 GVQKLQDGEF---IVQATKDCV------AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD----QR 313 (548)
Q Consensus 247 ~i~~L~~~~~---~~~~~~~~~------~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~----~~ 313 (548)
.++.+..... .-.....|+ +++.++++.+++++.+|+|+.+|.+.+..++++|||++.|...+.. .-
T Consensus 328 ~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~i 407 (526)
T COG5064 328 ALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDII 407 (526)
T ss_pred cHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHH
Confidence 8876544322 223345676 4567999999999999999999999999999999999999987643 34
Q ss_pred eeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 314 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 314 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
+.+++.|.+..|+.+|.-.+..+-.-+..++.|+...
T Consensus 408 ryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~ 444 (526)
T COG5064 408 RYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKV 444 (526)
T ss_pred HHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhh
Confidence 6889999999999999977776766667777776654
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.98 E-value=1.4e-30 Score=285.96 Aligned_cols=337 Identities=20% Similarity=0.184 Sum_probs=292.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
....++|.+++++|.+++.++++.+..+.+.|+++.|+++|++++..+|..|+++|++++.++++++..+.+.|+++.|+
T Consensus 415 ~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV 494 (2102)
T PLN03200 415 MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLV 494 (2102)
T ss_pred cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 44578999999999999988899999999999999999999999999999999999999988889999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
++|.+++..+++.|+|+|+|++.++++++..+.+.|+++.|+++|.+.+++.++.++|+|.+++...+. ..+
T Consensus 495 ~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~--------~~I 566 (2102)
T PLN03200 495 QLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA--------ATI 566 (2102)
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch--------hHH
Confidence 999999999999999999999998778888888899999999999999999999999999999865322 244
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchh----hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc-CCcchHH
Q 008940 167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA----GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVAD 241 (548)
Q Consensus 167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~ 241 (548)
+.++.++.++++.++..++.+|+++....+... .....|+++.|.++++++++.+++.|+++|.+++. +++....
T Consensus 567 ~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~a 646 (2102)
T PLN03200 567 SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCES 646 (2102)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 889999999999999999999999875444322 12356899999999999999999999999999976 4566788
Q ss_pred HHHhcCcccccccch----hhhhhhHHHHH------HHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc
Q 008940 242 FIRVGGVQKLQDGEF----IVQATKDCVAK------TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 311 (548)
Q Consensus 242 ~~~~g~i~~L~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~ 311 (548)
++..|++++|+.... .......+.-. .-++...+++.|++++|+.+|++.+.+++..|+.+|.|++..++
T Consensus 647 vv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 647 LATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch
Confidence 899999999876333 22222222211 12344556789999999999999999999999999999999999
Q ss_pred cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 312 QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 312 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
.+..+.+.|+++.|++++++++++.|+.|+++|.+|+.+.
T Consensus 727 ~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 727 VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCC
Confidence 9988899999999999999999999999999999998765
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=4.8e-30 Score=281.69 Aligned_cols=345 Identities=22% Similarity=0.277 Sum_probs=281.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
..++..+..|+.+|.+++.+.++.+..+.+.|++|.|+++|+++ ++.+|+.|+++|++++.++++++..+++.|+++.|
T Consensus 200 S~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~L 279 (2102)
T PLN03200 200 SGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPAL 279 (2102)
T ss_pred CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHH
Confidence 34578999999999999977788899999999999999999864 57999999999999999889999999999999999
Q ss_pred HHHhccCC---------hHHHHHHHHHHHHhhcCChh-----------H-------------------------------
Q 008940 86 ILMLRSED---------SAIHYEAVGVIGNLVHSSPN-----------I------------------------------- 114 (548)
Q Consensus 86 v~ll~~~~---------~~v~~~a~~~L~~l~~~~~~-----------~------------------------------- 114 (548)
++++..++ ..+++.|+|+|+|+|.+.+. .
T Consensus 280 I~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~ 359 (2102)
T PLN03200 280 INATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFD 359 (2102)
T ss_pred HHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhcc
Confidence 99998654 34699999999999875211 0
Q ss_pred -------------------------------------HHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhH
Q 008940 115 -------------------------------------KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 157 (548)
Q Consensus 115 -------------------------------------~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 157 (548)
++.+.+.|+++.|+.++...+.+++..++++|++++.++.+.+
T Consensus 360 ~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~ 439 (2102)
T PLN03200 360 PTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLW 439 (2102)
T ss_pred ccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 0011122444555556666667899999999999998888999
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-cchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940 158 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 236 (548)
Q Consensus 158 ~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 236 (548)
..+.+.|+++.|+++|.++++.+++.++++|++++... +++..+.+.|++++|+++|.+++..+++.|+|+|+|++.++
T Consensus 440 ~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~ 519 (2102)
T PLN03200 440 EALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS 519 (2102)
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999765 45778999999999999999999999999999999999887
Q ss_pred cchHHHH-HhcCcccccccchhhhhh-hHHHHHH----------------------------------HHHH--------
Q 008940 237 DNVADFI-RVGGVQKLQDGEFIVQAT-KDCVAKT----------------------------------LKRL-------- 272 (548)
Q Consensus 237 ~~~~~~~-~~g~i~~L~~~~~~~~~~-~~~~~~~----------------------------------~~~~-------- 272 (548)
++...++ +.|++++|++...+.... ......+ +.++
T Consensus 520 ~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d 599 (2102)
T PLN03200 520 EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLED 599 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhH
Confidence 6666665 679999876522211000 0011111 1111
Q ss_pred ---HHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC-ccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHh
Q 008940 273 ---EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348 (548)
Q Consensus 273 ---~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 348 (548)
+.....++++.|+.+++++++.+++.|+|+|.+++.+. +....++..|+++.|+.++++++.++++.++|+|.+++
T Consensus 600 ~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~ 679 (2102)
T PLN03200 600 LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALS 679 (2102)
T ss_pred HHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 11123578999999999999999999999999998764 45677899999999999999999999999999999999
Q ss_pred hhc
Q 008940 349 NKA 351 (548)
Q Consensus 349 ~~~ 351 (548)
...
T Consensus 680 ~~~ 682 (2102)
T PLN03200 680 RSI 682 (2102)
T ss_pred hCC
Confidence 753
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-30 Score=233.19 Aligned_cols=309 Identities=28% Similarity=0.396 Sum_probs=280.8
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc
Q 008940 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 90 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~ 90 (548)
++|..+..++.+|+. -+++|..+...|++.++.++-++.+..+|..+..+|.+++. ..++++.++..|+++.|+.+++
T Consensus 141 evqcnaVgCitnLaT-~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~ 218 (550)
T KOG4224|consen 141 EVQCNAVGCITNLAT-FDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLK 218 (550)
T ss_pred EEEeeehhhhhhhhc-cccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhc
Confidence 567788999999995 48889999999999999998899999999999999999996 7999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhhcCChhHHHHHHhcC--ChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940 91 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 168 (548)
Q Consensus 91 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~ 168 (548)
+.+.++|..++.++++++.+ ...|+.+.+.+ .+|.|++++.+++++++-.|..+|.+++++ .+++..+++.|.+|.
T Consensus 219 s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~ 296 (550)
T KOG4224|consen 219 SGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPL 296 (550)
T ss_pred cCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchH
Confidence 99999999999999999876 66688888877 999999999999999999999999999866 677888999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC-hhHHHHHHHHHHhccc-CCcchHHHHHhc
Q 008940 169 LIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLAD-NEDNVADFIRVG 246 (548)
Q Consensus 169 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~-~~~~~~~~~~~g 246 (548)
++++++++.-........|+.|++..+-+...+.+.|++.+|+++|+.++ .+++.+|..+|++|+. .+.+...+.+.|
T Consensus 297 lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esg 376 (550)
T KOG4224|consen 297 LVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESG 376 (550)
T ss_pred HHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcC
Confidence 99999998777888889999999999999889999999999999999765 6699999999999976 566666665544
Q ss_pred CcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHH
Q 008940 247 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL 326 (548)
Q Consensus 247 ~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~ 326 (548)
.++.+..++.++...+|.....++..|+.++..+..+.+.|.++.|+
T Consensus 377 ---------------------------------Ai~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLI 423 (550)
T KOG4224|consen 377 ---------------------------------AIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILI 423 (550)
T ss_pred ---------------------------------chHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceee
Confidence 77788899999999999999999999999999999999999999999
Q ss_pred HhhcCCCCccchhhHHHHHHHhhhcccccc
Q 008940 327 GLLGSTNPKQQLDGAVALFKLANKATTLSS 356 (548)
Q Consensus 327 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 356 (548)
.+..+.+.+++.+|+.+|.|++++...+..
T Consensus 424 p~t~s~s~Ev~gNaAaAL~Nlss~v~~Yar 453 (550)
T KOG4224|consen 424 PWTGSESEEVRGNAAAALINLSSDVEHYAR 453 (550)
T ss_pred cccCccchhhcccHHHHHHhhhhhhHHHHH
Confidence 999999999999999999999997655543
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.1e-29 Score=237.39 Aligned_cols=343 Identities=18% Similarity=0.245 Sum_probs=292.5
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
...|.++..|+++|.+++.+..+.-..+++.|.+|.++.++.+++..+++.|+++|+|++.+++..|..+.+.|++++|+
T Consensus 121 ~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl 200 (514)
T KOG0166|consen 121 DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLL 200 (514)
T ss_pred CCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHH
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCh-HHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940 87 LMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 165 (548)
Q Consensus 87 ~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 165 (548)
.++..++. ...+.+.|+|.|+|.+....-..-.-..++|.|..++.+.|+++...|+|++++|+.+..+..+.+++.|+
T Consensus 201 ~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gv 280 (514)
T KOG0166|consen 201 RLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGV 280 (514)
T ss_pred HHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccc
Confidence 99987665 78889999999999876211111222357999999999999999999999999999888899999999999
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchh-hhHhcCChHHHHHhhc-CCChhHHHHHHHHHHhccc-CCcchHHH
Q 008940 166 VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLAD-NEDNVADF 242 (548)
Q Consensus 166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~-~~~~~~~~ 242 (548)
++.|+++|.+.++.++..|+++++|++.+.+.+. .+++.|+++.|..++. ++...+++.|||+|+|++. +.+....+
T Consensus 281 v~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaV 360 (514)
T KOG0166|consen 281 VPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAV 360 (514)
T ss_pred hHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHH
Confidence 9999999999999999999999999998888764 4678899999999998 5566799999999999966 56678888
Q ss_pred HHhcCcccccc----cchhhhhhhHHH------HHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC---
Q 008940 243 IRVGGVQKLQD----GEFIVQATKDCV------AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--- 309 (548)
Q Consensus 243 ~~~g~i~~L~~----~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~--- 309 (548)
+..|++|.|+. .+|.......|. .++.+++..+++.|+++++..+|.-.|..+...++.+|.++-..
T Consensus 361 ida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 361 IDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred HHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999998865 455555544443 23568888999999999999999888888888899999988532
Q ss_pred ------CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940 310 ------DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 349 (548)
Q Consensus 310 ------~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 349 (548)
......+-+.||+..+-.|-.+.+.++-..|...+-+...
T Consensus 441 ~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~ 486 (514)
T KOG0166|consen 441 EKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFS 486 (514)
T ss_pred hccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 1123567788999999999999998887777766665544
No 7
>PHA02713 hypothetical protein; Provisional
Probab=99.96 E-value=1.3e-28 Score=252.02 Aligned_cols=160 Identities=19% Similarity=0.291 Sum_probs=148.8
Q ss_pred chHhhhcCCCCccEEEEeC-CeEEEchHHHHhcccHHHHhhhcCCCCCCC-CCceecCCCCHHHHHHHHHHHhcCccccc
Q 008940 370 LGDQFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGGYREKD-ARDIEIPNIRWEVFELMMRFIYTGSVDVT 447 (548)
Q Consensus 370 ~~~~~~~~~~~~Dv~~~~~-~~~~~~h~~il~~~s~~f~~~~~~~~~e~~-~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~ 447 (548)
..++++.++.+|||++.++ |+.|+|||.|||++|+||++||+++++|+. +.+|.|+++++++|+.+|+|+|||+ ++
T Consensus 15 ~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~ 92 (557)
T PHA02713 15 NISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--IS 92 (557)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CC
Confidence 3467899999999999998 899999999999999999999999999864 7899999999999999999999997 68
Q ss_pred hHhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcH
Q 008940 448 LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRII 527 (548)
Q Consensus 448 ~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~ 527 (548)
.+++++++.+|++|+++.+++.|++||.++++++||+.++.++..+++..|.+.|.+||.+||.++.++++|.+|+.+.+
T Consensus 93 ~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l 172 (557)
T PHA02713 93 SMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEIL 172 (557)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHH
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999966554
Q ss_pred HHHH
Q 008940 528 PEIH 531 (548)
Q Consensus 528 ~~~~ 531 (548)
.+++
T Consensus 173 ~~lL 176 (557)
T PHA02713 173 FDII 176 (557)
T ss_pred HHHh
Confidence 4433
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7e-28 Score=215.71 Aligned_cols=307 Identities=21% Similarity=0.272 Sum_probs=270.9
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcC--ChHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN--ALPTLI 86 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~Lv 86 (548)
...+|+.+..+|.+++ ...++|..++..|++|.|+.++++++..+|.+++.++.+++- +..+++.+.+.+ .++.|+
T Consensus 180 dirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv 257 (550)
T KOG4224|consen 180 DIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALV 257 (550)
T ss_pred hhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHH
Confidence 3578999999999999 678999999999999999999999999999999999999997 688999999887 999999
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
+++.++++.++..|..+|++++++ .+.+..+++.|.+|.++++++++.-......+.++.|++.+ +.+...+++.|++
T Consensus 258 ~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih-plNe~lI~dagfl 335 (550)
T KOG4224|consen 258 DLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH-PLNEVLIADAGFL 335 (550)
T ss_pred HHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc-cCcccceecccch
Confidence 999999999999999999999877 55678899999999999999998888888888999999754 7888889999999
Q ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHhhc-CCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHH
Q 008940 167 RPLIEMLQSP-DVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 244 (548)
Q Consensus 167 ~~L~~ll~~~-~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 244 (548)
.+|+.+|+.+ +++++.+|..+|+||+. ...++..+.+.|+++.+..++.++...++.....+++.|+-++..+..+.+
T Consensus 336 ~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld 415 (550)
T KOG4224|consen 336 RPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLD 415 (550)
T ss_pred hHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhh
Confidence 9999999985 45699999999999996 556788999999999999999999999999999999999999988888877
Q ss_pred hcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec------
Q 008940 245 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID------ 318 (548)
Q Consensus 245 ~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~------ 318 (548)
.|+++. |+.++.+.+.+++.+|+.+|.|++.+-++-..+.+
T Consensus 416 ~gi~~i---------------------------------LIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~ 462 (550)
T KOG4224|consen 416 SGIIPI---------------------------------LIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPV 462 (550)
T ss_pred cCCcce---------------------------------eecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc
Confidence 775554 45778888999999999999999987553322222
Q ss_pred CCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940 319 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 319 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 352 (548)
.|.-..|.+.+.+.+..++.-+.|++..|.+...
T Consensus 463 ~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 463 QGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 3555788999999888889999999999998643
No 9
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.96 E-value=3.2e-28 Score=247.64 Aligned_cols=160 Identities=28% Similarity=0.422 Sum_probs=153.7
Q ss_pred chHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchH
Q 008940 370 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 449 (548)
Q Consensus 370 ~~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~ 449 (548)
..+.++..+.+|||++.+++++|+|||.|||++||||++||+++++|+.+.+|.+.++++++++.+++|+|||++.++.+
T Consensus 26 ~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~ 105 (571)
T KOG4441|consen 26 GLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISED 105 (571)
T ss_pred HHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHHH
Q 008940 450 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE 529 (548)
Q Consensus 450 ~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~ 529 (548)
++++|+.+|++||++.+++.|.+||.++++++||+.+..+|+.|++.+|.+.+..|+.+||.++.++++|.+|+.+.+.+
T Consensus 106 nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ 185 (571)
T KOG4441|consen 106 NVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIG 185 (571)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996654333
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=2e-28 Score=247.23 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=139.8
Q ss_pred hhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceec--CCCCHHHHHHHHHHHhcCccccchHh
Q 008940 373 QFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI--PNIRWEVFELMMRFIYTGSVDVTLDI 450 (548)
Q Consensus 373 ~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l--~~~~~~~~~~~l~~~Yt~~~~~~~~~ 450 (548)
.++..+.+||+++.. |+.|+|||.|||++|||||+||+++++|+.+ +|.+ .++++++++.+|+|+|||++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~n 92 (480)
T PHA02790 15 ALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHN 92 (480)
T ss_pred HHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEeccc
Confidence 466789999998754 5589999999999999999999999999954 5665 48999999999999999999999999
Q ss_pred HHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCc--chhHhchh
Q 008940 451 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTR--PGHSNLIQ 524 (548)
Q Consensus 451 ~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~--~~f~~l~~ 524 (548)
+++++.+|++||++.+++.|++||.++++++||+.++.+|+.|++++|.+.+.+||.+||.++.++ ++|.+|+.
T Consensus 93 V~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~ 168 (480)
T PHA02790 93 VVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSM 168 (480)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 89998863
No 11
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.95 E-value=2.1e-28 Score=217.20 Aligned_cols=316 Identities=20% Similarity=0.283 Sum_probs=261.3
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhc-cCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChhHHH
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKK 116 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~ 116 (548)
-+|.|.+-|-++|.+.+..|..-++.+.+ ....-.+.+++.|.++.+++++. ....-++-.|+|+|.|++++......
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 45778888888899999999888887765 34445678889999999999995 56677888999999999999888778
Q ss_pred HHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCH--HHHHHHHHHHHHhhcC
Q 008940 117 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV--QLREMSAFALGRLAQD 194 (548)
Q Consensus 117 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~--~v~~~a~~~L~~l~~~ 194 (548)
.+++.|++|.++++|.+.+.++++.++|+|+|++-+++.+|+.+.+.|++++++.++.++.. .+...+.|+|+|||..
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 88899999999999999999999999999999999999999999999999999999988655 6789999999999977
Q ss_pred Ccchhh-hHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcch-HHHHHhcCcccccccch----hhhhhh-H----
Q 008940 195 MHNQAG-IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-ADFIRVGGVQKLQDGEF----IVQATK-D---- 263 (548)
Q Consensus 195 ~~~~~~-~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~g~i~~L~~~~~----~~~~~~-~---- 263 (548)
...... -.-...++.|.+++.+.++++...|+|+++.|+..+..+ ..+...|....|+.... .+++.. +
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGN 311 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN 311 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcC
Confidence 644322 222357889999999999999999999999999876544 55567777666554221 222211 1
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC-ccceeeecCCchHHHHHhhcCCCCccchhhHH
Q 008940 264 CVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAV 342 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 342 (548)
.+.++-.+.+.+++.|+++.+..+|.++...+|++|||++.|+..+. ++-+.+++.+.+|.|+.+|.+.+..+++.|||
T Consensus 312 IVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACW 391 (526)
T COG5064 312 IVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACW 391 (526)
T ss_pred eeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 11233456678899999999999999988899999999999997654 56688999999999999999999999999999
Q ss_pred HHHHHhhhcccc
Q 008940 343 ALFKLANKATTL 354 (548)
Q Consensus 343 ~L~~l~~~~~~~ 354 (548)
++.|...+...+
T Consensus 392 AisNatsgg~~~ 403 (526)
T COG5064 392 AISNATSGGLNR 403 (526)
T ss_pred HHHhhhccccCC
Confidence 999998876554
No 12
>PHA03098 kelch-like protein; Provisional
Probab=99.95 E-value=5.7e-27 Score=242.66 Aligned_cols=150 Identities=23% Similarity=0.424 Sum_probs=143.7
Q ss_pred CCCCccEEEEe--CCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHhHHHH
Q 008940 377 NATLSDVTFLV--EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDL 454 (548)
Q Consensus 377 ~~~~~Dv~~~~--~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~l 454 (548)
++.+||+++.+ +|++|+|||.||+++|+||++||.++++ +.+|.+++ ++++|+.+|+|+|||++.++.+++.+|
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~l 81 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDI 81 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHH
Confidence 88999999998 9999999999999999999999999888 56899999 999999999999999999999999999
Q ss_pred HHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHHHH
Q 008940 455 LRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 530 (548)
Q Consensus 455 l~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~~ 530 (548)
+.+|++|+++.|++.|+++|.+.++.+||+.++.+|..|++..|.+.|.+||.+||.++.++++|.+|+.+.+.++
T Consensus 82 l~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~l 157 (534)
T PHA03098 82 LSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKI 157 (534)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987655544
No 13
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.92 E-value=1.6e-25 Score=202.61 Aligned_cols=160 Identities=30% Similarity=0.508 Sum_probs=152.2
Q ss_pred HhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccc---h
Q 008940 372 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT---L 448 (548)
Q Consensus 372 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~---~ 448 (548)
.+++...+++||+|+++++.|+|||.|||+||.|||+|+.++|.|+.+..|++++...++|+.+|+|||||++.++ +
T Consensus 36 ~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~e 115 (620)
T KOG4350|consen 36 DELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEE 115 (620)
T ss_pred HHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchH
Confidence 4567789999999999999999999999999999999999999999999999999999999999999999999864 6
Q ss_pred HhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHH
Q 008940 449 DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIP 528 (548)
Q Consensus 449 ~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~ 528 (548)
+...+.+.+|++|++++|.....+++.+.+..+|++.+++.|..|+.++|.+.|.-|.-+|..++...+.|..|+++.+.
T Consensus 116 d~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~sL~ 195 (620)
T KOG4350|consen 116 DILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKDSLK 195 (620)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHH
Q 008940 529 EIH 531 (548)
Q Consensus 529 ~~~ 531 (548)
++.
T Consensus 196 e~l 198 (620)
T KOG4350|consen 196 ELL 198 (620)
T ss_pred HHH
Confidence 764
No 14
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.88 E-value=1.6e-20 Score=191.40 Aligned_cols=337 Identities=18% Similarity=0.203 Sum_probs=265.4
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 88 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 88 (548)
+..+.+.+...|.+++ .++.+...+.+.|+++.|+++|++++.++...++.+|.+|+. ..+|+..+.+.|+++.|+++
T Consensus 262 QeqLlrv~~~lLlNLA-ed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLA-EDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHHHHHHh-cChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHH
Confidence 3456677888899999 788999999999999999999999999999999999999998 68899999999999999999
Q ss_pred hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940 89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 168 (548)
Q Consensus 89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~ 168 (548)
+.+++.+++..++++|.||+.+ ++.|..++..|++|.|+.++.++ ..+..+..+|.+++. +++.+..+...+++|.
T Consensus 340 l~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~ 415 (708)
T PF05804_consen 340 LPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQ 415 (708)
T ss_pred hcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHH
Confidence 9999999999999999999866 78899999999999999999864 455678899999975 4678888888999999
Q ss_pred HHHhhCC-CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhh---------------------------------
Q 008940 169 LIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL--------------------------------- 214 (548)
Q Consensus 169 L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll--------------------------------- 214 (548)
+++++-+ +++.+...++..+.|++.+..+...+.+.++++.|+...
T Consensus 416 L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L 495 (708)
T PF05804_consen 416 LMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDL 495 (708)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 9998655 566677777888888888887776666666666554322
Q ss_pred ----cC-CChhHHHHHHHHHHhcccCC-cchHHHHHhcCcccccccchhhhhhhHH------HHHH----HHHHHHhhhh
Q 008940 215 ----DS-KNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQATKDC------VAKT----LKRLEEKIHG 278 (548)
Q Consensus 215 ----~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~~~~~~~~~~~~------~~~~----~~~~~~~~~~ 278 (548)
.. .+++....++++|+||...+ ++...+.+.+.+|-|.+....-....+. ..++ .+....+.+.
T Consensus 496 ~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~s 575 (708)
T PF05804_consen 496 AKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKS 575 (708)
T ss_pred HHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence 22 24556667778888886543 4444444557666554322111011111 1111 2334555678
Q ss_pred hhhHHHHHHHHh--hhhhhhhhHHHHhhhccCCCccceeeec-CCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 279 RVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 279 ~~~~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
|+++.|+.+|.. .|.++..+.++++.++..+++.|..++. .+++..|+.+++++|+.+|+.|-.+|--+++..
T Consensus 576 gli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 576 GLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred ChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 999999999998 5788999999999999999887766544 678899999999999999999888888887754
No 15
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.84 E-value=2e-20 Score=153.11 Aligned_cols=153 Identities=24% Similarity=0.471 Sum_probs=132.5
Q ss_pred hHhhhcCCCCccEEEEeCC---eEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccc
Q 008940 371 GDQFVNNATLSDVTFLVEG---RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT 447 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~~---~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~ 447 (548)
-..++.+..|+|++|.++| +.++|||.||++||++|+ |.++..| ......++|.++++|...++||||+++++.
T Consensus 57 tadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~dDad~Ea~~t~iRWIYTDEidfk 133 (280)
T KOG4591|consen 57 TADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLDDADFEAFHTAIRWIYTDEIDFK 133 (280)
T ss_pred HHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhcccccCHHHHHHhheeeeccccccc
Confidence 3457789999999999984 889999999999999987 3322222 234677889999999999999999999876
Q ss_pred h--HhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhh
Q 008940 448 L--DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQR 525 (548)
Q Consensus 448 ~--~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~ 525 (548)
. +.+.++.+.|+.|+++-|+..|+.-+...++++||+.+|++|+..++..|++.|.+.|+-+|+++.+ ..|.+++..
T Consensus 134 ~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~-a~FaqMs~a 212 (280)
T KOG4591|consen 134 EDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLGK-ADFAQMSAA 212 (280)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccCh-HHHHhccHH
Confidence 4 4578999999999999999999999999999999999999999999999999999999999999865 678888555
Q ss_pred cH
Q 008940 526 II 527 (548)
Q Consensus 526 ~~ 527 (548)
++
T Consensus 213 LL 214 (280)
T KOG4591|consen 213 LL 214 (280)
T ss_pred HH
Confidence 43
No 16
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.81 E-value=3.5e-18 Score=174.42 Aligned_cols=301 Identities=21% Similarity=0.221 Sum_probs=245.1
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcC
Q 008940 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 122 (548)
Q Consensus 43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 122 (548)
+-.+++. ...+...+...|.|++. ++.....+.+.|+++.|+++|..++.++...++.+|.+|+.. .+++..+.+.|
T Consensus 255 ~~~l~~k-QeqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~g 331 (708)
T PF05804_consen 255 LQTLIRK-QEQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESG 331 (708)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcC
Confidence 3334444 34555688899999998 799999999999999999999999999999999999999866 67799999999
Q ss_pred ChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhH
Q 008940 123 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA 202 (548)
Q Consensus 123 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 202 (548)
+++.|.+++.+++.+++..++++|.||+ .++..+..+++.|++|.|+.+|.++ ..+..++.+|.+++.+++.+..+.
T Consensus 332 iV~kL~kLl~s~~~~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 332 IVEKLLKLLPSENEDLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHh
Confidence 9999999999999999999999999997 4588899999999999999999865 567789999999999999999999
Q ss_pred hcCChHHHHHhhcC-CChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhh-----
Q 008940 203 HNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI----- 276 (548)
Q Consensus 203 ~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~----- 276 (548)
..++++.+++++.+ +++.+...++..+.|++.++.+.+.+.+.|+++.|++..+... .....+.+.++..--
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~--D~lLlKlIRNiS~h~~~~k~ 486 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTR--DPLLLKLIRNISQHDGPLKE 486 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcc--cHHHHHHHHHHHhcCchHHH
Confidence 99999999887655 5677777889999999999999999999999998886544322 222333333332111
Q ss_pred -hhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCCC-ccceeeecCCchHHHHHhhcCC--CCccchhhHHHHHHHhhhc
Q 008940 277 -HGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGST--NPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 277 -~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~ 351 (548)
-.+++..|+.++.. .+++...+++++|+|+...+ +..+.+.+.+.+|.|..+|..+ ++++...+...++.++.+.
T Consensus 487 ~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~ 566 (708)
T PF05804_consen 487 LFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP 566 (708)
T ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence 12477777787776 57889999999999998654 3455666789999999999753 4567888888888887653
No 17
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.80 E-value=3e-19 Score=143.85 Aligned_cols=106 Identities=32% Similarity=0.661 Sum_probs=95.7
Q ss_pred HhhhcCCCCccEEEEeC-CeEEEchHHHHhcccHHHHhhhcCC-CCCCCCCceecCCCCHHHHHHHHHHHhcCccccc-h
Q 008940 372 DQFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGG-YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT-L 448 (548)
Q Consensus 372 ~~~~~~~~~~Dv~~~~~-~~~~~~h~~il~~~s~~f~~~~~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~-~ 448 (548)
++++.++.++|+++.++ +.+|++||.+|+++|+||+.||.+. +.+....+|.++++++++|..+++|+|+|++.++ .
T Consensus 2 ~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~ 81 (111)
T PF00651_consen 2 NDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSD 81 (111)
T ss_dssp HHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-T
T ss_pred hHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCHH
Confidence 46788899999999999 8999999999999999999999987 5666666899999999999999999999999998 9
Q ss_pred HhHHHHHHHHHHhChHhHHHHHHHHHHhc
Q 008940 449 DIAQDLLRAADQYLLEGLKRLCEYTIAQD 477 (548)
Q Consensus 449 ~~~~~ll~~a~~~~~~~l~~~c~~~l~~~ 477 (548)
+++.+++.+|++|+++.|++.|+.+|.++
T Consensus 82 ~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 82 ENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999999764
No 18
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.79 E-value=2.6e-18 Score=160.22 Aligned_cols=162 Identities=28% Similarity=0.455 Sum_probs=145.2
Q ss_pred hhhcCCCCccEEEEeCC-----eEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccc
Q 008940 373 QFVNNATLSDVTFLVEG-----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT 447 (548)
Q Consensus 373 ~~~~~~~~~Dv~~~~~~-----~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~ 447 (548)
.++++...+|+.|++++ ..+++||.+|+..|+.|.+||.+++.+....+|.+||+.|.+|..+|+|+|++.+.+.
T Consensus 107 ~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~ 186 (521)
T KOG2075|consen 107 ALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLA 186 (521)
T ss_pred hhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhh
Confidence 35678889999999983 6899999999999999999999999999888999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHH-HHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhc
Q 008940 448 LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYEL-SEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRI 526 (548)
Q Consensus 448 ~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~-a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~ 526 (548)
.+++..++.+|++|.++.|.+.|.++|...+-..|.+..+.- |..++-++|...|++-|..+|.+..+.++|.++...
T Consensus 187 ~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~~- 265 (521)
T KOG2075|consen 187 ADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDST- 265 (521)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhhH-
Confidence 999999999999999999999999999998887776665555 999999999999999999999999999999998633
Q ss_pred HHHHHHHHH
Q 008940 527 IPEIHNYFA 535 (548)
Q Consensus 527 ~~~~~~~l~ 535 (548)
...+.+.++
T Consensus 266 ~dt~~evl~ 274 (521)
T KOG2075|consen 266 RDTYEEVLR 274 (521)
T ss_pred HHHHHHHHh
Confidence 333444333
No 19
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.79 E-value=4e-18 Score=169.61 Aligned_cols=315 Identities=26% Similarity=0.304 Sum_probs=239.7
Q ss_pred hhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcc--hhhHhhhcCChH
Q 008940 6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE--NKNQIVECNALP 83 (548)
Q Consensus 6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~ 83 (548)
....|.++..|+..+..+|+++...+..+.+.|+|+.|+.+|.+.+.+|+..|+.+|.||+.++.. |+-.+.+.++++
T Consensus 243 ~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~ 322 (717)
T KOG1048|consen 243 MSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVP 322 (717)
T ss_pred hccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChH
Confidence 445578899999999999999999999999999999999999999999999999999999986555 999999999999
Q ss_pred HHHHHhcc-CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc--------------CChHHHHHHHHHHHH
Q 008940 84 TLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--------------CCSESQREAALLLGQ 148 (548)
Q Consensus 84 ~Lv~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--------------~~~~~~~~a~~~L~~ 148 (548)
.++++|+. .|.++++.+..+|+||++. +.++..++.. .+..|..-+-. .+.++..++..+|.|
T Consensus 323 ~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRN 400 (717)
T KOG1048|consen 323 TLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRN 400 (717)
T ss_pred HHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhcc
Confidence 99999985 7999999999999999876 6666666654 34444443321 125688999999999
Q ss_pred hhcCCchhHHHHHh-cCChHHHHHhhCC------CCHHHHHHHHHHHHHhhcCCc-----ch------------------
Q 008940 149 FAATDSDCKVHIVQ-RGAVRPLIEMLQS------PDVQLREMSAFALGRLAQDMH-----NQ------------------ 198 (548)
Q Consensus 149 l~~~~~~~~~~~~~-~g~v~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~-----~~------------------ 198 (548)
+++...+.++.+.+ .|.|+.|+..++. .+....+++...|.||+.--+ ..
T Consensus 401 lSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~ 480 (717)
T KOG1048|consen 401 LSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAE 480 (717)
T ss_pred ccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCccc
Confidence 99888888888877 7899999998862 356788999999999984322 00
Q ss_pred ---------hh----------------------hHhcCChHHHHHhh-cCCChhHHHHHHHHHHhcccCCcchHHHHHhc
Q 008940 199 ---------AG----------------------IAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVG 246 (548)
Q Consensus 199 ---------~~----------------------~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g 246 (548)
+. +....++..-+.++ .+.++.+.+.++.+|-|++.....-...+...
T Consensus 481 ~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~ 560 (717)
T KOG1048|consen 481 SVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGA 560 (717)
T ss_pred ccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhh
Confidence 00 00001122212223 24566777777788888854322211111111
Q ss_pred CcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHH
Q 008940 247 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL 326 (548)
Q Consensus 247 ~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~ 326 (548)
.......++.++.+++.++..+...++.+|.|++.+..++..+- .++++.|+
T Consensus 561 ---------------------------v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv 612 (717)
T KOG1048|consen 561 ---------------------------VFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLV 612 (717)
T ss_pred ---------------------------hhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHH
Confidence 11344578999999999999999999999999999999987666 78999999
Q ss_pred HhhcCCCC------ccchhhHHHHHHHhhh
Q 008940 327 GLLGSTNP------KQQLDGAVALFKLANK 350 (548)
Q Consensus 327 ~ll~~~~~------~v~~~a~~~L~~l~~~ 350 (548)
+.|....+ ++...++.+|.++..+
T Consensus 613 ~~Lp~~~~~~~~sedtv~~vc~tl~niv~~ 642 (717)
T KOG1048|consen 613 RCLPGSGPSTSLSEDTVRAVCHTLNNIVRK 642 (717)
T ss_pred HhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence 99986544 4566788888888754
No 20
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.76 E-value=2.7e-17 Score=170.58 Aligned_cols=341 Identities=20% Similarity=0.228 Sum_probs=260.1
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC---CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
..+-++.-.+.+..++ .+++.+..++..|.++.|+++|.-+ +.+.+..|-.+|.|+...+++.+..-.+..+++.|
T Consensus 207 ~t~D~ee~ar~fLemS-ss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lL 285 (2195)
T KOG2122|consen 207 GTDDEEEMARTFLEMS-SSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLL 285 (2195)
T ss_pred ccCCHHHHHHHHHHhc-cCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHH
Confidence 3344566677778888 6788888899999999999999754 46789999999999998666655544443333333
Q ss_pred H---H-------Hhcc--C---C--hHHH-HHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc------------CC
Q 008940 86 I---L-------MLRS--E---D--SAIH-YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS------------CC 135 (548)
Q Consensus 86 v---~-------ll~~--~---~--~~v~-~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~------------~~ 135 (548)
= . .+.. + + .+-+ ..|+.+|..++.+ ++.|..|.+.|++..+..|+.- ..
T Consensus 286 eQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~ 364 (2195)
T KOG2122|consen 286 EQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGEC 364 (2195)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 2 1 1211 1 1 1223 3677778888655 8899999999999999888753 12
Q ss_pred hHHHHHHHHHHHHhhcCCchhHHHHH-hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc--chhhhHhcCChHHHHH
Q 008940 136 SESQREAALLLGQFAATDSDCKVHIV-QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH--NQAGIAHNGGLVPLLK 212 (548)
Q Consensus 136 ~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ 212 (548)
..+++++..+|.||+.++..++..+. ..|+++.++..|.+...++.+..+.+|.||+...+ .+..+.+.|-+..|..
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 45899999999999999888887664 47999999999999888999999999999996654 3677778888888775
Q ss_pred h-hcCCChhHHHHHHHHHHhcccC-CcchHHHHHh-cCcccccccch-h--------h---hhh----hHHHHHHHHHHH
Q 008940 213 L-LDSKNGSLQHNAAFALYGLADN-EDNVADFIRV-GGVQKLQDGEF-I--------V---QAT----KDCVAKTLKRLE 273 (548)
Q Consensus 213 l-l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~-g~i~~L~~~~~-~--------~---~~~----~~~~~~~~~~~~ 273 (548)
. ++..........+.+||||+.+ .+++..|... |.+..|+.... . + ... ...++.+-...+
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 5 4555667778899999999875 6788888765 55555544211 0 0 000 111122334446
Q ss_pred HhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhc-cCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 274 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL-CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 274 ~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l-~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
.+.+.+++..|++.|++.+-.+..++|.+|+|| +++++.++.+++.|+++.|.+|+++++..+.+-++.+|.||....
T Consensus 525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 677889999999999999999999999999999 567888999999999999999999999999999999999998765
No 21
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.75 E-value=1.2e-17 Score=152.04 Aligned_cols=158 Identities=20% Similarity=0.379 Sum_probs=146.8
Q ss_pred cchHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceec----CCCCHHHHHHHHHHHhcCcc
Q 008940 369 YLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI----PNIRWEVFELMMRFIYTGSV 444 (548)
Q Consensus 369 ~~~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l----~~~~~~~~~~~l~~~Yt~~~ 444 (548)
++.+.++.++..+||.+.+-|...+.||.-|. .|+||++||+|.|+|+..+.|.+ |.++..++...+.-+|.+++
T Consensus 58 yiyq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEv 136 (488)
T KOG4682|consen 58 YIYQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEV 136 (488)
T ss_pred HHHHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhe
Confidence 45678889999999999999999999999887 89999999999999999986655 57999999999999999999
Q ss_pred ccchHhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchh
Q 008940 445 DVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQ 524 (548)
Q Consensus 445 ~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~ 524 (548)
+|..+.+..++.+|.+++++.|.+.|.+.+.+.+++.|++.+|+.+..|+...+++.|.+++..|+-.+....-+.+++.
T Consensus 137 eI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~ 216 (488)
T KOG4682|consen 137 EIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISI 216 (488)
T ss_pred eccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777777755
Q ss_pred hcH
Q 008940 525 RII 527 (548)
Q Consensus 525 ~~~ 527 (548)
++.
T Consensus 217 ~Lm 219 (488)
T KOG4682|consen 217 NLM 219 (488)
T ss_pred HHH
Confidence 543
No 22
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.1e-15 Score=136.61 Aligned_cols=304 Identities=18% Similarity=0.240 Sum_probs=246.5
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc--CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
...+..+++.+|..+..+.|+ +.+..+...++.+|.. ++.++-...++.+..-|..++.+++.+++.++.+.+.
T Consensus 120 ~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~ 195 (461)
T KOG4199|consen 120 NESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELIL 195 (461)
T ss_pred chhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHH
Confidence 346788999999999987777 5567888899998864 5688899999999999988999999999999999999
Q ss_pred HHhc-cCChHHHHHHHHHHHHhhcCCh---------hHHHHHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCch
Q 008940 87 LMLR-SEDSAIHYEAVGVIGNLVHSSP---------NIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSD 155 (548)
Q Consensus 87 ~ll~-~~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~ 155 (548)
..|. .+..++.+...++++-+..+++ +..+.+...|++..|+..++- -+|.+...++.+|..++.. .+
T Consensus 196 ~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E 274 (461)
T KOG4199|consen 196 QVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DE 274 (461)
T ss_pred HHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HH
Confidence 7776 4455688889999999976533 345778888899999998875 3588888999999999855 56
Q ss_pred hHHHHHhcCChHHHHHhhCCC-CHH---HHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhc--CCChhHHHHHHHHH
Q 008940 156 CKVHIVQRGAVRPLIEMLQSP-DVQ---LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD--SKNGSLQHNAAFAL 229 (548)
Q Consensus 156 ~~~~~~~~g~v~~L~~ll~~~-~~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~v~~~a~~~L 229 (548)
....+.+.|++..|+.++.+. +.. +...++..|..|+-.+..+..+++.|+.+.++.++. +.+|.+...++.++
T Consensus 275 ~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i 354 (461)
T KOG4199|consen 275 ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAII 354 (461)
T ss_pred HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHH
Confidence 677899999999999999884 333 457788999999999999999999999999888774 46788999999999
Q ss_pred Hhccc-CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh--hhhhhhhhHHHHhhhc
Q 008940 230 YGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHL 306 (548)
Q Consensus 230 ~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~~~~~a~~aL~~l 306 (548)
+-|+- .+++...+++.| .-...++.|+. ....+|.+||+.+.|+
T Consensus 355 ~~l~LR~pdhsa~~ie~G---------------------------------~a~~avqAmkahP~~a~vQrnac~~IRNi 401 (461)
T KOG4199|consen 355 SILCLRSPDHSAKAIEAG---------------------------------AADLAVQAMKAHPVAAQVQRNACNMIRNI 401 (461)
T ss_pred HHHHhcCcchHHHHHhcc---------------------------------hHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 99975 566766666655 44455666765 4578999999999999
Q ss_pred cC-CCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 307 CS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 307 ~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
+. +.++++.++ .+|++.|++.....++..+..+-.+|..|.-+.
T Consensus 402 v~rs~~~~~~~l-~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v 446 (461)
T KOG4199|consen 402 VVRSAENRTILL-ANGIEKLIRTAKANHETCEAAAKAALRDLGCDV 446 (461)
T ss_pred HHhhhhccchHH-hccHHHHHHHHHhcCccHHHHHHHHHHhcCcch
Confidence 75 455665544 678999999999999999888888898886653
No 23
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1.1e-14 Score=130.20 Aligned_cols=305 Identities=18% Similarity=0.254 Sum_probs=238.6
Q ss_pred HHHHHHHHHh---hhChhhHHHHHhcCCchHHHHhh---ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940 15 RAADAITNLA---HENSSIKTRVRMEGGIPPLVELL---EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 88 (548)
Q Consensus 15 ~a~~~L~~l~---~~~~~~~~~i~~~g~i~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 88 (548)
.....+-+++ +.+-..+..-...|..+.++.++ .+++..+..+++.+|..+..+.|+ +.+..++..++.+
T Consensus 78 E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~l 153 (461)
T KOG4199|consen 78 ETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKL 153 (461)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHH
Confidence 3344445554 22233344444556677666655 456788889999999999876554 4556688999999
Q ss_pred hc--cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCCc---------hh
Q 008940 89 LR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDS---------DC 156 (548)
Q Consensus 89 l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~---------~~ 156 (548)
|. .++.++-...+..+..-|...+.+|+.+++.++.+.+.+.+.... .++.+.+.|++..+..+++ ..
T Consensus 154 L~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~h 233 (461)
T KOG4199|consen 154 LALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGH 233 (461)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHH
Confidence 97 457788888889999988888899999999999999998876654 5688999999999975532 23
Q ss_pred HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC-h---hHHHHHHHHHHh
Q 008940 157 KVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN-G---SLQHNAAFALYG 231 (548)
Q Consensus 157 ~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-~---~v~~~a~~~L~~ 231 (548)
.+.+.+.|++..|.+.++. -+|.+....+.+|..|+...+.+..+.+.||+..|++++.+.+ . ...+.++..|..
T Consensus 234 Ar~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLra 313 (461)
T KOG4199|consen 234 ARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRA 313 (461)
T ss_pred HHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHH
Confidence 4567778889999999986 3688999999999999999999999999999999999998754 2 345688999999
Q ss_pred cccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHH--hhhhhhhhhHHHHhhhcc-C
Q 008940 232 LADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR--VAEKGVQRRVALALAHLC-S 308 (548)
Q Consensus 232 l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~~~~~a~~aL~~l~-~ 308 (548)
|+.++.++..+++.|+.+. ++.++. +++|.+..+++.+++.++ +
T Consensus 314 lAG~DsvKs~IV~~gg~~~---------------------------------ii~l~~~h~~~p~Vi~~~~a~i~~l~LR 360 (461)
T KOG4199|consen 314 LAGSDSVKSTIVEKGGLDK---------------------------------IITLALRHSDDPLVIQEVMAIISILCLR 360 (461)
T ss_pred HhCCCchHHHHHHhcChHH---------------------------------HHHHHHHcCCChHHHHHHHHHHHHHHhc
Confidence 9999999999988886554 444443 378999999999999997 5
Q ss_pred CCccceeeecCCchHHHHHhhcC-C-CCccchhhHHHHHHHhhhcccccc
Q 008940 309 PDDQRTIFIDGGGLELLLGLLGS-T-NPKQQLDGAVALFKLANKATTLSS 356 (548)
Q Consensus 309 ~~~~~~~~~~~~~i~~L~~ll~~-~-~~~v~~~a~~~L~~l~~~~~~~~~ 356 (548)
.|++...+++.|+-...++.++. + ...+|++||+.+.|++......+.
T Consensus 361 ~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~ 410 (461)
T KOG4199|consen 361 SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRT 410 (461)
T ss_pred CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 67788889999999999998873 3 345699999999999987655443
No 24
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.70 E-value=1.3e-16 Score=157.40 Aligned_cols=162 Identities=21% Similarity=0.403 Sum_probs=140.8
Q ss_pred CCCccEEEEe-CCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhc-Ccccc-----chHh
Q 008940 378 ATLSDVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT-GSVDV-----TLDI 450 (548)
Q Consensus 378 ~~~~Dv~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-~~~~~-----~~~~ 450 (548)
.+.-|+.+.+ ||+.++|||++|++|++||..||..-|.|++.-.+..-.+..+.+..+|+|+|+ .+..+ ..+.
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 4445666666 578899999999999999999999999999876666666679999999999995 44432 3456
Q ss_pred HHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHHHH
Q 008940 451 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 530 (548)
Q Consensus 451 ~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~~ 530 (548)
+.+++..||.|.+.+|+..|+..|.+.++..||-.+++||.+|++..|+..|++||..|+..+..-....+++-..+.++
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~~LK~l 867 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGFHLKKL 867 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcchHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999988777777777788888
Q ss_pred HHHHHhhcC
Q 008940 531 HNYFAKALT 539 (548)
Q Consensus 531 ~~~l~~~~~ 539 (548)
-++.+++++
T Consensus 868 ~~~yrkm~~ 876 (1267)
T KOG0783|consen 868 AQRYRKMLS 876 (1267)
T ss_pred HHHHHHHhh
Confidence 888888876
No 25
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.69 E-value=1.5e-16 Score=122.81 Aligned_cols=90 Identities=37% Similarity=0.692 Sum_probs=85.8
Q ss_pred cEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHhHHHHHHHHHHh
Q 008940 382 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQY 461 (548)
Q Consensus 382 Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~~a~~~ 461 (548)
|+++.++|+.|++||.+|+++|+||+.||.+++.++....+.+++.+++.|+.+++|+|+|++.++..++.+++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999998888878899999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHH
Q 008940 462 LLEGLKRLCE 471 (548)
Q Consensus 462 ~~~~l~~~c~ 471 (548)
+++.+.+.|+
T Consensus 81 ~~~~l~~~c~ 90 (90)
T smart00225 81 QIPGLVELCE 90 (90)
T ss_pred CcHHHHhhhC
Confidence 9999999884
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.66 E-value=2.5e-14 Score=144.99 Aligned_cols=322 Identities=20% Similarity=0.199 Sum_probs=249.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
+.++.+++-+++.|.++.+++......+.+.++++.++.++.+++..+...|+.+|.+++. .+...+.+...+.+..|.
T Consensus 88 h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~ 166 (503)
T PF10508_consen 88 HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLK 166 (503)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHH
Confidence 5678999999999999998777777888889999999999999999999999999999998 566677788888899999
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
.++..+++.+|..+..++.+++..+++....+...|+++.++..+.++|.-++.+++.+|..++. .+.....+.+.|++
T Consensus 167 ~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~ 245 (503)
T PF10508_consen 167 SLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIF 245 (503)
T ss_pred HHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHH
Confidence 99998899999999999999999999999999999999999999999888899999999999997 67888889999999
Q ss_pred HHHHHhhCCC--CH---HH-HHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchH
Q 008940 167 RPLIEMLQSP--DV---QL-REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA 240 (548)
Q Consensus 167 ~~L~~ll~~~--~~---~v-~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 240 (548)
+.|..++.+. +| .+ .-......++++...+....-.-...+..+.+++.+.++..+..|..+++.++...+++.
T Consensus 246 ~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~ 325 (503)
T PF10508_consen 246 DKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQ 325 (503)
T ss_pred HHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHH
Confidence 9999999763 33 11 223346677787753322211112334456677788899999999999999998887766
Q ss_pred HH-HHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCcc----c--
Q 008940 241 DF-IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ----R-- 313 (548)
Q Consensus 241 ~~-~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~----~-- 313 (548)
.+ ...|. .-..++...-....++..++|..++.++.++...+.. +
T Consensus 326 ~L~~~~~~----------------------------~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~ 377 (503)
T PF10508_consen 326 LLLQKQGP----------------------------AMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDIL 377 (503)
T ss_pred HHHhhcch----------------------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHH
Confidence 66 22220 0011334444445556778899999999998433221 0
Q ss_pred ----e--eeecCCchH-HHHHhhcCCCCccchhhHHHHHHHhhhcccccccc
Q 008940 314 ----T--IFIDGGGLE-LLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVD 358 (548)
Q Consensus 314 ----~--~~~~~~~i~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~i~ 358 (548)
. .....+... .+..+++.+=+++|.++...|..++...|+...+.
T Consensus 378 ~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~ 429 (503)
T PF10508_consen 378 SITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREIC 429 (503)
T ss_pred HHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 1 112223334 67778888889999999999999999999876544
No 27
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.65 E-value=4.3e-14 Score=130.55 Aligned_cols=306 Identities=18% Similarity=0.188 Sum_probs=228.9
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhc----CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRME----GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~----g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
..++.-+..++...+ .++..|..+.+. +.++.|.+..++++.++-....++|+|+|..+.++|..+.+.|+-+.+
T Consensus 56 ~tv~~~qssC~A~~s-k~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqiv 134 (604)
T KOG4500|consen 56 DTVYLFQSSCLADRS-KNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIV 134 (604)
T ss_pred chhhhhhHHHHHHHh-hhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceeh
Confidence 356666777888888 456666555544 556777777788889999999999999999999999999999998888
Q ss_pred HHHhcc---C----ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC------------------------
Q 008940 86 ILMLRS---E----DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC------------------------ 134 (548)
Q Consensus 86 v~ll~~---~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~------------------------ 134 (548)
+++|+. . +.+....+...|.|-..++.+.+.+.++.|+++.|...+.-.
T Consensus 135 id~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~ 214 (604)
T KOG4500|consen 135 IDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEM 214 (604)
T ss_pred HhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHh
Confidence 888862 1 346777888899999999999999999999999877665321
Q ss_pred ----------------------ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CC-------HHHHHHH
Q 008940 135 ----------------------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PD-------VQLREMS 184 (548)
Q Consensus 135 ----------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~-------~~v~~~a 184 (548)
+++..+.+...|...+ .++..+..+++.|.+..++++++. ++ -.....+
T Consensus 215 ~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~ 293 (604)
T KOG4500|consen 215 LYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRI 293 (604)
T ss_pred hhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhh
Confidence 1223333333444443 223444556777888877777764 21 1233444
Q ss_pred HHHHHHhhcCCcchhhhHhcC-ChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhH
Q 008940 185 AFALGRLAQDMHNQAGIAHNG-GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKD 263 (548)
Q Consensus 185 ~~~L~~l~~~~~~~~~~~~~~-~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~ 263 (548)
+....-+..+++.-..+...+ .+.-+...+.+.+......+..+|+|+++.++++..+++.|
T Consensus 294 ~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~----------------- 356 (604)
T KOG4500|consen 294 AELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKD----------------- 356 (604)
T ss_pred hhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHH-----------------
Confidence 444455555555544455444 56678888999999999999999999999999988887665
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHh-----hhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccch
Q 008940 264 CVAKTLKRLEEKIHGRVLNHLLYLMRV-----AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQL 338 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~L~~ll~~-----~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 338 (548)
++..|+.++.. ++..+|.+++.+|.|++.+..++..+...|..+.++..++...|.++.
T Consensus 357 ----------------~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~f 420 (604)
T KOG4500|consen 357 ----------------FLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTF 420 (604)
T ss_pred ----------------HHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchH
Confidence 66677776654 567889999999999999999999999999999999999988899987
Q ss_pred hhHHHHHHHhhh
Q 008940 339 DGAVALFKLANK 350 (548)
Q Consensus 339 ~a~~~L~~l~~~ 350 (548)
.-...+..+...
T Consensus 421 kllgTlrM~~d~ 432 (604)
T KOG4500|consen 421 KLLGTLRMIRDS 432 (604)
T ss_pred HHHHHHHHHHhc
Confidence 777777666553
No 28
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.65 E-value=2.4e-15 Score=150.09 Aligned_cols=308 Identities=19% Similarity=0.225 Sum_probs=228.0
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChh--HHH
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN--IKK 116 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~ 116 (548)
-++..+.+|.+.++.+|..|...+..+|.++.+.+..+.+.|+++.|+.++.+.+.+++..|+++|.||..+... .+-
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 467788999999999999999999999999999999999999999999999999999999999999999877655 788
Q ss_pred HHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC--------------CCHHHH
Q 008940 117 EVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--------------PDVQLR 181 (548)
Q Consensus 117 ~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~--------------~~~~v~ 181 (548)
.+.+.++++.+++++.. .|.++++....+|+||++. +..+..++. ..+..|...+-. .+..+.
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence 89999999999999986 7899999999999999866 444444433 344555444321 135677
Q ss_pred HHHHHHHHHhhc-CCcchhhhHhc-CChHHHHHhhc------CCChhHHHHHHHHHHhcccCC--c----chHHHHHhcC
Q 008940 182 EMSAFALGRLAQ-DMHNQAGIAHN-GGLVPLLKLLD------SKNGSLQHNAAFALYGLADNE--D----NVADFIRVGG 247 (548)
Q Consensus 182 ~~a~~~L~~l~~-~~~~~~~~~~~-~~l~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~--~----~~~~~~~~g~ 247 (548)
.++.+||.|++. ..+.++++.+. |.+..|+..++ +.+....++++.+|.||+..- + ........+.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 899999999997 44567777665 56777887775 235667789999999998521 1 1111111111
Q ss_pred cccccccchhhhhhhHHHHHHH-------------------HHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhcc
Q 008940 248 VQKLQDGEFIVQATKDCVAKTL-------------------KRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLC 307 (548)
Q Consensus 248 i~~L~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~ 307 (548)
.+.--. ......|...-. +-..-.+...++...+.+|.. .+..+.++++.+|.|++
T Consensus 472 ~~~~~~----~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNlt 547 (717)
T KOG1048|consen 472 LPGVGP----PAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLT 547 (717)
T ss_pred cccCCC----cccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhh
Confidence 111000 001112221111 112223555678877777765 78899999999999996
Q ss_pred CCC--c----cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940 308 SPD--D----QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 308 ~~~--~----~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 352 (548)
.+. . .+..+.++.+++.|+.++..+++.|.+.++.+|.||+.+..
T Consensus 548 A~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r 598 (717)
T KOG1048|consen 548 AGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR 598 (717)
T ss_pred ccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch
Confidence 542 1 23455888999999999999999999999999999998643
No 29
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.63 E-value=8.8e-14 Score=141.06 Aligned_cols=304 Identities=17% Similarity=0.206 Sum_probs=240.1
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 89 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll 89 (548)
.+....++.+|..+.. ....... ..+..+.|...|.++++.||..++..|+++..++......+.+.++++.++.++
T Consensus 52 ~e~v~~~~~iL~~~l~-~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L 128 (503)
T PF10508_consen 52 REQVELICDILKRLLS-ALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL 128 (503)
T ss_pred hHHHHHHHHHHHHHHh-ccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH
Confidence 3445677777777774 2222222 457778899999999999999999999999987666677788899999999999
Q ss_pred ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHH
Q 008940 90 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 169 (548)
Q Consensus 90 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L 169 (548)
.+++..+...|+.+|.+++...+.. +.+...+.++.|..++..++..++..+..++.+++..+++....+.+.|+++.+
T Consensus 129 ~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~l 207 (503)
T PF10508_consen 129 RDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLL 207 (503)
T ss_pred cCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHH
Confidence 9999999999999999999875554 667788889999999998888899999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhH-----H-HHHHHHHHhcccCCcchHHHH
Q 008940 170 IEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSL-----Q-HNAAFALYGLADNEDNVADFI 243 (548)
Q Consensus 170 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v-----~-~~a~~~L~~l~~~~~~~~~~~ 243 (548)
+..++++|.-++..++..|..|+..+.+...+.+.|+++.|..++.+...+- . .......++++...+. ...
T Consensus 208 l~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~-~v~- 285 (503)
T PF10508_consen 208 LKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ-EVL- 285 (503)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH-HHH-
Confidence 9999999999999999999999998888899999999999999997643221 1 1222344455442111 000
Q ss_pred HhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceee-ecCC-c
Q 008940 244 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF-IDGG-G 321 (548)
Q Consensus 244 ~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~-~~~~-~ 321 (548)
..-..++..+..++.+.|+..+..|..+++.++...+++..+ ...+ .
T Consensus 286 -------------------------------~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~ 334 (503)
T PF10508_consen 286 -------------------------------ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPA 334 (503)
T ss_pred -------------------------------HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchH
Confidence 011235667777888899999999999999999988888766 3332 2
Q ss_pred ----hHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 322 ----LELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 322 ----i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
+..+.....++..++|.++..++.++...
T Consensus 335 ~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 335 MKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 44444555567778899999999999753
No 30
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.59 E-value=2.3e-14 Score=149.32 Aligned_cols=262 Identities=19% Similarity=0.196 Sum_probs=216.7
Q ss_pred HHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC------------CHHHHHHHHHHHHHhhccCcchhhHhhh-cCC
Q 008940 15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT------------DTKVQRAAAGALRTLAFKNDENKNQIVE-CNA 81 (548)
Q Consensus 15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~ 81 (548)
.|+..|..++ -+++.|..+.+.|++..+.+|++-+ ...+|.+|..+|.||..++..|+..++. .|.
T Consensus 317 aA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 4555566666 4789999999999999999988521 2568999999999999998888888876 489
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhh-hcCChHHHHHHHHHHHHhhcCCchhHHH
Q 008940 82 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVH 159 (548)
Q Consensus 82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 159 (548)
++.+|..|.+..+++....+.+|+||+...+ ..+..+.+.|-+..|+.+. ....+...+..+.+||||+.++.+++..
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~ 475 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE 475 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence 9999999999888999999999999987654 4566777789999998875 4445567788899999999999899888
Q ss_pred HHh-cCChHHHHHhhCCC----CHHHHHHHHHHHHHhhcC----CcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHH
Q 008940 160 IVQ-RGAVRPLIEMLQSP----DVQLREMSAFALGRLAQD----MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 230 (548)
Q Consensus 160 ~~~-~g~v~~L~~ll~~~----~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 230 (548)
+.. .|++..|+.+|..+ ...+.+.+-++|.|++.. .+.+..+.+.+.+..|++.|++....+..++|++||
T Consensus 476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLW 555 (2195)
T KOG2122|consen 476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLW 555 (2195)
T ss_pred hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhh
Confidence 766 79999999999754 446889999999998743 344667788899999999999999999999999999
Q ss_pred hccc-CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC
Q 008940 231 GLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 309 (548)
Q Consensus 231 ~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~ 309 (548)
||+. +++.++. +++.|.++.|..++++++..+-+.++.+|.|+...
T Consensus 556 NLSAR~p~DQq~---------------------------------LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 556 NLSARSPEDQQM---------------------------------LWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hhhcCCHHHHHH---------------------------------HHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 9965 4444333 46677899999999999999999999999999765
Q ss_pred C
Q 008940 310 D 310 (548)
Q Consensus 310 ~ 310 (548)
.
T Consensus 603 R 603 (2195)
T KOG2122|consen 603 R 603 (2195)
T ss_pred C
Confidence 4
No 31
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.57 E-value=2.1e-13 Score=126.06 Aligned_cols=341 Identities=17% Similarity=0.166 Sum_probs=247.5
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc----C---CHHHHHHHHHHHHHhhccCcchhhHhhhcCC
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----T---DTKVQRAAAGALRTLAFKNDENKNQIVECNA 81 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~----~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 81 (548)
+.++..+.+++|+++|+.+.++|..+.+.||-..+++.|+. + +.+....+...|.|..-++++.+..+.+.|+
T Consensus 100 d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gV 179 (604)
T KOG4500|consen 100 DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGV 179 (604)
T ss_pred cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhccc
Confidence 45889999999999999999999999999998888888863 2 2466677788899988888889999999999
Q ss_pred hHHHHHHhcc--C--------------------------------------------ChHHHHHHHHHHHHhhcCChhHH
Q 008940 82 LPTLILMLRS--E--------------------------------------------DSAIHYEAVGVIGNLVHSSPNIK 115 (548)
Q Consensus 82 i~~Lv~ll~~--~--------------------------------------------~~~v~~~a~~~L~~l~~~~~~~~ 115 (548)
++.|...+.- . ++++++....+|...+. ++..+
T Consensus 180 l~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vk 258 (604)
T KOG4500|consen 180 LNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVK 258 (604)
T ss_pred HHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-Cccee
Confidence 9877654431 1 12344455555555543 34555
Q ss_pred HHHHhcCChHHHHHhhhc-CC----hH---HHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHH
Q 008940 116 KEVLAAGALQPVIGLLSS-CC----SE---SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA 187 (548)
Q Consensus 116 ~~~~~~g~i~~L~~ll~~-~~----~~---~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~ 187 (548)
-.+.+.|.+..+..+++. ++ .+ ....++....-+..+++..........+++.+.+.++++|......+.-+
T Consensus 259 l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~La 338 (604)
T KOG4500|consen 259 LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLA 338 (604)
T ss_pred eehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHH
Confidence 666777888888887765 11 11 22333333333434444433333333389999999999999999999999
Q ss_pred HHHhhcCCcchhhhHhcCChHHHHHhhcC-----CChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccc-------
Q 008940 188 LGRLAQDMHNQAGIAHNGGLVPLLKLLDS-----KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGE------- 255 (548)
Q Consensus 188 L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~------- 255 (548)
++|+++.+..+..+++.+.+..|++++.. ++.+++..++.+|.|+.-...++..+...|+.+.++...
T Consensus 339 igNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv 418 (604)
T KOG4500|consen 339 IGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPV 418 (604)
T ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcc
Confidence 99999999999999999999999998863 457788899999999999999999999999877654321
Q ss_pred -hhhhhhhHHHHHHHHHH-HHh-hhhhhhHHHHHHHHhhhhh-hhhhHHHHhhhccCCCc---cceeeecCCchHHHHHh
Q 008940 256 -FIVQATKDCVAKTLKRL-EEK-IHGRVLNHLLYLMRVAEKG-VQRRVALALAHLCSPDD---QRTIFIDGGGLELLLGL 328 (548)
Q Consensus 256 -~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~L~~ll~~~~~~-~~~~a~~aL~~l~~~~~---~~~~~~~~~~i~~L~~l 328 (548)
|......++...+-+.+ .++ -+...+.+|+.+-+++|.. +-.+..+.+..+..+.. .-..+.+.||++.++.+
T Consensus 419 ~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm 498 (604)
T KOG4500|consen 419 TFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSM 498 (604)
T ss_pred hHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHH
Confidence 11112223322222221 122 2345788999999887765 78888888888876543 33567778999999999
Q ss_pred hcCCCCccchhhHHHHHHHhhh
Q 008940 329 LGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 329 l~~~~~~v~~~a~~~L~~l~~~ 350 (548)
+...+-..+..|..+++-++..
T Consensus 499 ~t~~hi~mqnEalVal~~~~~~ 520 (604)
T KOG4500|consen 499 FTKNHINMQNEALVALLSTESK 520 (604)
T ss_pred HHHhhHHHhHHHHHHHHHHHHH
Confidence 9988888899999999888764
No 32
>PRK09687 putative lyase; Provisional
Probab=99.54 E-value=3.3e-13 Score=125.47 Aligned_cols=252 Identities=17% Similarity=0.128 Sum_probs=137.3
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 119 (548)
++.|.+.|.+++..+|..|+.+|..+.. ..+++.+..+++++++.+|..++++|+.+-.....
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------ 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------ 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------
Confidence 4456666666666666666666665542 12445555566666666666666666666321110
Q ss_pred hcCChHHHHHh-hhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch
Q 008940 120 AAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 198 (548)
Q Consensus 120 ~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 198 (548)
....++.|..+ ++++++.|+..++.+|++++...... ....++.+...+.++++.||..++.+|+.+..
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----- 157 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND----- 157 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----
Confidence 11234455544 45555666666666666664322111 01133344455555566666666666654421
Q ss_pred hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-CcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhh
Q 008940 199 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 277 (548)
Q Consensus 199 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (548)
...++.|+.++.++++.++..|+.+|+.+... +.....+.. .|. +........+...+....+
T Consensus 158 -----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~-----~L~------D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 158 -----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVA-----MLQ------DKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHH-----Hhc------CCChHHHHHHHHHHHccCC
Confidence 12455566666666666666666666666221 111111110 010 1111222233333333444
Q ss_pred hhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhc-CCCCccchhhHHHHHH
Q 008940 278 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFK 346 (548)
Q Consensus 278 ~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~ 346 (548)
..+++.|+..+.+++ ++..++.+|+++.. ..++|.|.+++. ++++.++..+.+++..
T Consensus 222 ~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 222 KRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 557888888888755 67788888887755 247899999996 7888888888887653
No 33
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.53 E-value=5.1e-13 Score=121.20 Aligned_cols=240 Identities=17% Similarity=0.134 Sum_probs=183.6
Q ss_pred HhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChh
Q 008940 35 RMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 113 (548)
Q Consensus 35 ~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~ 113 (548)
.+.+-++.|+.+|+. .++.+++.++.++++.+. .+.++..+.+.|+++.+..++.++++.++..|+++|.|++.. .+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence 455677899999985 579999999999999986 699999999999999999999999999999999999999876 44
Q ss_pred HHHHHHhcCChHHHHHhhhcC--ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 008940 114 IKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 191 (548)
Q Consensus 114 ~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l 191 (548)
.+..+-. .++.+++...+. +.+++..+..+|.+++.. ......+. +.++.++.++.+++..++..++++|.||
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-NDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-cchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4444432 577777755443 578999999999999755 44444443 4799999999999999999999999999
Q ss_pred hcCCcchhhhHhcCChHHHHHhhcCC-ChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHH
Q 008940 192 AQDMHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK 270 (548)
Q Consensus 192 ~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~ 270 (548)
+.++...+.+...+++..++.+++.. +.++...++....|+..+-....... .+..|+.+.. -
T Consensus 162 S~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~--------~~~~~~~~~L--------~ 225 (254)
T PF04826_consen 162 SENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVF--------VQDDFSEDSL--------F 225 (254)
T ss_pred ccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCccccee--------ccccCCchhH--------H
Confidence 99999888888889999999999876 57788899999999975422211100 0011111110 0
Q ss_pred HHHHhhh-hhhhHHHHHHHHhhhhhhhhhH
Q 008940 271 RLEEKIH-GRVLNHLLYLMRVAEKGVQRRV 299 (548)
Q Consensus 271 ~~~~~~~-~~~~~~L~~ll~~~~~~~~~~a 299 (548)
....+ ..+...|..+..++|++||..+
T Consensus 226 --~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 226 --SLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred --HHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 00111 2366778888888999998754
No 34
>PRK09687 putative lyase; Provisional
Probab=99.53 E-value=5.5e-13 Score=124.01 Aligned_cols=225 Identities=16% Similarity=0.086 Sum_probs=154.5
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 160 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 160 (548)
.++.|..+|.+++..+|..+++.|..+-. ...++.+..++.++++.++..++++|+.+-.....
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 57889999999999999999999998832 23577888899999999999999999999532211
Q ss_pred HhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcch
Q 008940 161 VQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 239 (548)
Q Consensus 161 ~~~g~v~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 239 (548)
....++.|..+ ++++++.|+..++.+|++++...... ....+..+...+.++++.|+..++.+|+.+... ...
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai 161 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAI 161 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHH
Confidence 22466778877 67789999999999999997543211 112455577778888999999999999887532 221
Q ss_pred HHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHh--hhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeee
Q 008940 240 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK--IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 317 (548)
Q Consensus 240 ~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~ 317 (548)
..+. ..|.+ ........+...+..+ .+..+++.|+.++.+.++.+|..|+++|+.+-
T Consensus 162 ~~L~-----~~L~d------~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~---------- 220 (280)
T PRK09687 162 PLLI-----NLLKD------PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRK---------- 220 (280)
T ss_pred HHHH-----HHhcC------CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccC----------
Confidence 2111 11111 1111112222222222 23457777888888888888888888887642
Q ss_pred cCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 318 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 318 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
...++|.|++.+.+++ ++..++.+|.++...
T Consensus 221 ~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 221 DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK 251 (280)
T ss_pred ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH
Confidence 2256788888887654 667777878777653
No 35
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=1e-12 Score=119.21 Aligned_cols=193 Identities=20% Similarity=0.213 Sum_probs=158.8
Q ss_pred hhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCch
Q 008940 77 VECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 155 (548)
Q Consensus 77 ~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 155 (548)
.+.+-++.|+.+|+ +.++.+++.+..++++.+.. +..++.+.+.|+++.+..++.++++.++..|+++|.|++.. .+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence 45567899999998 56899999999999998755 77889999999999999999999999999999999999754 55
Q ss_pred hHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940 156 CKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 233 (548)
Q Consensus 156 ~~~~~~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 233 (548)
++..+-. .++.+++...+ -+..++..++++|.||+...+.+..+. +.++.++.+|.+++..++..++.+|.||+
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 5555432 56766665544 367899999999999998877776665 47889999999999999999999999999
Q ss_pred cCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhh-hhhhhhhHHHHhhhccC
Q 008940 234 DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCS 308 (548)
Q Consensus 234 ~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~a~~aL~~l~~ 308 (548)
.++.....+...+ ++..++.++... +.++...++..+.|+..
T Consensus 163 ~np~~~~~Ll~~q---------------------------------~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 163 ENPDMTRELLSAQ---------------------------------VLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred cCHHHHHHHHhcc---------------------------------chhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 9998877665544 566677777774 67777888888888854
No 36
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.49 E-value=8e-12 Score=120.69 Aligned_cols=334 Identities=13% Similarity=0.149 Sum_probs=237.0
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhc-----CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCCh
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRME-----GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNAL 82 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-----g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 82 (548)
..+++.++.+..+..+...++.....+.+. ....+++.+|+.+|.-+...|+..|..+...++.+.......-..
T Consensus 66 ~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~ 145 (429)
T cd00256 66 DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYF 145 (429)
T ss_pred CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHH
Confidence 446889999999999998887776666664 456788889999999999999999999987544332221111123
Q ss_pred HHHHHHhccC-ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC--ChHHHHHHHHHHHHhhcCCchhHHH
Q 008940 83 PTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVH 159 (548)
Q Consensus 83 ~~Lv~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~ 159 (548)
+.+...+..+ +.+.+..++.+|..|... +..|..+.+.++++.|+.+++.. +.+....++.+++-++.. ++....
T Consensus 146 ~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~ 223 (429)
T cd00256 146 NWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEV 223 (429)
T ss_pred HHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHh
Confidence 3445555543 577888889999999765 77788888888999999999763 457899999999999755 445556
Q ss_pred HHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCc-------chhhhHhcCChHHHHHhhcC---CChhHHHHHHH-
Q 008940 160 IVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH-------NQAGIAHNGGLVPLLKLLDS---KNGSLQHNAAF- 227 (548)
Q Consensus 160 ~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~- 227 (548)
..+.+.++.++.+++. ..+.+...++.+|.|+..... ....++..|.+ .+++.|.. .|+++....-.
T Consensus 224 ~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~-~~l~~L~~rk~~DedL~edl~~L 302 (429)
T cd00256 224 LKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVL-KTLQSLEQRKYDDEDLTDDLKFL 302 (429)
T ss_pred hccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChH-HHHHHHhcCCCCcHHHHHHHHHH
Confidence 6778999999999987 456788999999999997542 12344554544 45555543 24554433222
Q ss_pred ------HHHhcccCCcchHHHHHhcCcccccccchhhh-hhhHHHHHHHHHHHHhhhhhhhHHHHHHHH-hhhhhhhhhH
Q 008940 228 ------ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRV 299 (548)
Q Consensus 228 ------~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~a 299 (548)
.+..++.-++....+ ..|.+. .++. +...-+.++..++. --+..++..|+.+|. +.|+.+..-|
T Consensus 303 ~e~L~~~~k~ltsfD~Y~~El-~sg~L~------WSp~H~se~FW~EN~~kf~-~~~~~llk~L~~iL~~s~d~~~laVA 374 (429)
T cd00256 303 TEELKNSVQDLSSFDEYKSEL-RSGRLH------WSPVHKSEKFWRENADRLN-EKNYELLKILIHLLETSVDPIILAVA 374 (429)
T ss_pred HHHHHHHHHHcCCHHHHHHHH-hcCCcc------CCCCCCCchHHHHHHHHHH-hcchHHHHHHHHHHhcCCCcceeehh
Confidence 223333333333333 223221 1111 22344555666654 223568899999996 4788999999
Q ss_pred HHHhhhccCC-CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940 300 ALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 300 ~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 352 (548)
|.=++.+++. |.+|..+-+.|+-..+.+++.++|++||..|..++..|--+.|
T Consensus 375 c~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~~w 428 (429)
T cd00256 375 CHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVHNW 428 (429)
T ss_pred hhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999975 6688888889999999999999999999999999998866544
No 37
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.46 E-value=2e-12 Score=105.62 Aligned_cols=119 Identities=28% Similarity=0.409 Sum_probs=111.4
Q ss_pred HhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc
Q 008940 75 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 154 (548)
Q Consensus 75 ~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 154 (548)
.+.+.|+++.+++++.++++.++..++++|++++.+.+..+..+.+.|+++.+++++.+++++++..++++|++++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 45678999999999999999999999999999999888888999999999999999999999999999999999998877
Q ss_pred hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940 155 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 193 (548)
Q Consensus 155 ~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 193 (548)
.....+.+.|+++.++.++.+++..+++.++++|++++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 778888899999999999999999999999999999873
No 38
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.46 E-value=1.8e-12 Score=105.92 Aligned_cols=118 Identities=36% Similarity=0.499 Sum_probs=111.3
Q ss_pred HHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCCh
Q 008940 33 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 112 (548)
Q Consensus 33 ~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~ 112 (548)
.+.+.|+++.++++++++++.++..++.+|.+++..+++....+.+.|+++.+++++.++++.++..++++|++++.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35678999999999999999999999999999999778999999999999999999999999999999999999999887
Q ss_pred hHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhh
Q 008940 113 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 150 (548)
Q Consensus 113 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 150 (548)
..+..+.+.|+++.+++++.+.+.++++.++++|.+++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 88888899999999999999999999999999999986
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.42 E-value=3.6e-11 Score=131.08 Aligned_cols=178 Identities=16% Similarity=0.076 Sum_probs=104.6
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcC
Q 008940 126 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 205 (548)
Q Consensus 126 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 205 (548)
.++..|.++++.++..|+.+|..+- ..+.|..++.++++.+|..++.+|+.+..... .
T Consensus 718 ~l~~~L~D~d~~VR~~Av~aL~~~~--------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~ 775 (897)
T PRK13800 718 LFAAALGDPDHRVRIEAVRALVSVD--------------DVESVAGAATDENREVRIAVAKGLATLGAGGA--------P 775 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhccc--------------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccc--------h
Confidence 4455566666666666666655541 12345566667777777777777776643211 2
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHH
Q 008940 206 GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLL 285 (548)
Q Consensus 206 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 285 (548)
.++.|..+++++++.++..|+.+|.++...+.....+.. .|.+ ........+...+..+.....++.|+
T Consensus 776 ~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~-----aL~d------~d~~VR~~Aa~aL~~l~~~~a~~~L~ 844 (897)
T PRK13800 776 AGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATA-----ALRA------SAWQVRQGAARALAGAAADVAVPALV 844 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHH-----HhcC------CChHHHHHHHHHHHhccccchHHHHH
Confidence 256677777777778888888888777544322111111 1111 11122233444455555556777777
Q ss_pred HHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHH
Q 008940 286 YLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 345 (548)
Q Consensus 286 ~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 345 (548)
.+|.++++.||..|+++|+.+.. .....+.|...+++.++.||..|..+|.
T Consensus 845 ~~L~D~~~~VR~~A~~aL~~~~~---------~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 845 EALTDPHLDVRKAAVLALTRWPG---------DPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhccCC---------CHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 77777777788888887776511 1234566777777777777777777664
No 40
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.1e-10 Score=109.74 Aligned_cols=339 Identities=16% Similarity=0.185 Sum_probs=233.4
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 88 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 88 (548)
+.-..+.|...|.+++ .+-.....+++.+++..|++.|..++.++.......|..++. -.+|+..+.+.|+++.|+++
T Consensus 276 QeqLLrva~ylLlNlA-ed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~kl 353 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLA-EDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKL 353 (791)
T ss_pred HHHHHHHHHHHHHHHh-hhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHh
Confidence 3455677888899999 566666778888999999999999999999999999999998 58999999999999999999
Q ss_pred hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940 89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 168 (548)
Q Consensus 89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~ 168 (548)
....+++++...+..+.|++.+ ...+..++..|.+|.+..++.+.... ..|...+..++.+ ...+..+....+++.
T Consensus 354 fp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~d-D~~K~MfayTdci~~ 429 (791)
T KOG1222|consen 354 FPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCD-DDAKAMFAYTDCIKL 429 (791)
T ss_pred cCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccC-cHHHHHHHHHHHHHH
Confidence 9999999999999999999866 67789999999999999999875532 3345566666543 566666777788888
Q ss_pred HHHhhCC-CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHH-------------------------------------H
Q 008940 169 LIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-------------------------------------L 210 (548)
Q Consensus 169 L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~-------------------------------------L 210 (548)
++..+-+ .+.++-.......-|+|.+..+...+.+..++.. |
T Consensus 430 lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdL 509 (791)
T KOG1222|consen 430 LMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDL 509 (791)
T ss_pred HHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 8877654 3334443333344566654433322222222222 2
Q ss_pred HHhhcCC-ChhHHHHHHHHHHhccc-CCcchHHHHHhcCcccccc--------cchhhhhhhHHHH--HHHHHHHHhhhh
Q 008940 211 LKLLDSK-NGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQD--------GEFIVQATKDCVA--KTLKRLEEKIHG 278 (548)
Q Consensus 211 ~~ll~~~-~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~ 278 (548)
...+... +...-..++++++||.- +-++...+.+...+|-+.+ .....+..-.|.. -..........+
T Consensus 510 a~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a 589 (791)
T KOG1222|consen 510 AGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPA 589 (791)
T ss_pred HHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcc
Confidence 2222222 23344456666666654 3344444444455553221 1111111112211 122333445677
Q ss_pred hhhHHHHHHHHh--hhhhhhhhHHHHhhhccCCCccceeeecC-CchHHHHHhhcCCCCccchhhHHHHHHHhhhccc
Q 008940 279 RVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDG-GGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 353 (548)
Q Consensus 279 ~~~~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 353 (548)
++++.++.+|+. .+.++..+...+...+......|..+.+. ..-..|+.|+++.+.++|+.+-.+|--++.+...
T Consensus 590 ~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~E 667 (791)
T KOG1222|consen 590 KLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKE 667 (791)
T ss_pred ccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHH
Confidence 899999999998 56778888888888888776666655554 4446789999999999999998888888876643
No 41
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.28 E-value=4.9e-10 Score=122.25 Aligned_cols=244 Identities=18% Similarity=0.115 Sum_probs=186.6
Q ss_pred cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH
Q 008940 37 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 116 (548)
Q Consensus 37 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 116 (548)
.+.++.|++.|+++++.+|..|+..|+.+.. .+.++.|+..|+++++.+|..|+.+|..+....+
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence 3466789999999999999999999998763 3468899999999999999999999988843211
Q ss_pred HHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 008940 117 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 196 (548)
Q Consensus 117 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 196 (548)
..+.+...|.++++.++..++.+|..+... -...++..|.++++.+|..|+.+|..+-
T Consensus 685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~d~~VR~~Av~aL~~~~---- 742 (897)
T PRK13800 685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAALGDPDHRVRIEAVRALVSVD---- 742 (897)
T ss_pred ------chHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHhcCCCHHHHHHHHHHHhccc----
Confidence 235777888889999999999999887421 2345778899999999999999999762
Q ss_pred chhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc-hHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHh
Q 008940 197 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 275 (548)
Q Consensus 197 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~ 275 (548)
..+.|..++.++++.++..++.+|..+...... ...+.. +.+ +........+...+...
T Consensus 743 ---------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~------ll~-----D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 743 ---------DVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRA------LTG-----DPDPLVRAAALAALAEL 802 (897)
T ss_pred ---------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHH------Hhc-----CCCHHHHHHHHHHHHhc
Confidence 234577889999999999999999999764321 122211 110 11223334455555555
Q ss_pred hhhh-hhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHH
Q 008940 276 IHGR-VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 347 (548)
Q Consensus 276 ~~~~-~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 347 (548)
.... ....++..+.+.++.+|..|+.+|+.+. ....++.|..+|.+++..||..|+.+|..+
T Consensus 803 g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 803 GCPPDDVAAATAALRASAWQVRQGAARALAGAA----------ADVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred CCcchhHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 5443 4577889999999999999999998763 234579999999999999999999999987
No 42
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8.6e-10 Score=101.54 Aligned_cols=191 Identities=24% Similarity=0.286 Sum_probs=165.5
Q ss_pred hhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
+...++-++.|+..|..++ ++-++...++..|+..+++..+++++..+|..|+++|+..+..||..++.+.+.|+.+.|
T Consensus 93 ~s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 4455688999999999999 678888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc-CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc--CChHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008940 86 ILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQ 162 (548)
Q Consensus 86 v~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 162 (548)
+..+.+ ++.+++..|+.+++.+...++.....+...++...|..++++ .+...++.++..+..+..........+..
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 999984 466788999999999999999888999998899999999998 45778899999999999877766665555
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940 163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 197 (548)
Q Consensus 163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 197 (548)
.+....+..+....+.++.+.+..++..+......
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence 66767777777777888999888888777654433
No 43
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.26 E-value=1.4e-09 Score=101.40 Aligned_cols=342 Identities=14% Similarity=0.130 Sum_probs=235.8
Q ss_pred hhHHHHHHHHHHHHHhhh-ChhhHHHHHhcC---CchHHHHhhccCC-HHHHHHHHHHHHHhhccCcchhhHhhh-----
Q 008940 9 VNSVIRRAADAITNLAHE-NSSIKTRVRMEG---GIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVE----- 78 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g---~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~----- 78 (548)
+..+.+.-++.+.++... .+..+..+.... .+..++.++++.+ ++.....+..+..+...+......+..
T Consensus 32 s~~ise~d~~~i~~~~~~~~~~~r~~~l~~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~ 111 (442)
T KOG2759|consen 32 SEMISEEDYQFIRRLEKAPLSKERAQVLSANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKL 111 (442)
T ss_pred HHHHhHhhHHHHHHHhcccchhhhhHHhhcccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhh
Confidence 345555666666666531 122233333333 3566777777644 667778888888777644333333222
Q ss_pred -cCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhc-CChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCch
Q 008940 79 -CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS-CCSESQREAALLLGQFAATDSD 155 (548)
Q Consensus 79 -~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~ 155 (548)
.-.-...+.+|...+.-+...+.+++..++...... -...+. -....+-..+++ .+++....++++|..+... ++
T Consensus 112 k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~e 189 (442)
T KOG2759|consen 112 KRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCK-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DE 189 (442)
T ss_pred hccchHHHHHHHhcCChHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cc
Confidence 223667889999999999999999999997653321 111000 012344455555 5677888899999999866 77
Q ss_pred hHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC-ChhHHHHHHHHHHhc
Q 008940 156 CKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGL 232 (548)
Q Consensus 156 ~~~~~~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l 232 (548)
.|..++...++..++..+.+ .+-+++...+.|+|-|+.++.....+...+.++.|..++++. ...|.+-++.++.|+
T Consensus 190 yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nl 269 (442)
T KOG2759|consen 190 YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNL 269 (442)
T ss_pred hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999998843 467899999999999999998887787778899999999875 578889999999999
Q ss_pred ccCC-------cchHHHHHhcCcccccc---cchhhh-----------hhhHHHH-------------------------
Q 008940 233 ADNE-------DNVADFIRVGGVQKLQD---GEFIVQ-----------ATKDCVA------------------------- 266 (548)
Q Consensus 233 ~~~~-------~~~~~~~~~g~i~~L~~---~~~~~~-----------~~~~~~~------------------------- 266 (548)
.... +....++..++.+.+-. ..++.. .......
T Consensus 270 l~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~ 349 (442)
T KOG2759|consen 270 LDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKS 349 (442)
T ss_pred hccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccc
Confidence 8654 34455666666554421 000000 0000000
Q ss_pred --HHHHHHHHhhh--hhhhHHHHHHHHh-hhhhhhhhHHHHhhhccC-CCccceeeecCCchHHHHHhhcCCCCccchhh
Q 008940 267 --KTLKRLEEKIH--GRVLNHLLYLMRV-AEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDG 340 (548)
Q Consensus 267 --~~~~~~~~~~~--~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 340 (548)
.=-++.....+ -.++..|+.+|+. .||.+..-||.-++.+.+ .|+++..+.+.||-+.+.+|+.++|++||..|
T Consensus 350 e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~A 429 (442)
T KOG2759|consen 350 EKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHA 429 (442)
T ss_pred cchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHH
Confidence 00022222222 2389999999998 568889999999999987 47899999999999999999999999999999
Q ss_pred HHHHHHHhhhcc
Q 008940 341 AVALFKLANKAT 352 (548)
Q Consensus 341 ~~~L~~l~~~~~ 352 (548)
..++..|..+.|
T Consensus 430 LlavQ~lm~~~w 441 (442)
T KOG2759|consen 430 LLAVQKLMVHNW 441 (442)
T ss_pred HHHHHHHHhhcc
Confidence 999998876543
No 44
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.2e-10 Score=113.73 Aligned_cols=270 Identities=17% Similarity=0.106 Sum_probs=202.1
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHh----cCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCch
Q 008940 80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA----AGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 155 (548)
Q Consensus 80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 155 (548)
.+++.|..+|.+++...++-|..+|..++.++.+.-+.-.. .-.+|.++++.+++++.+|..|+.++-.+.-..+.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence 46788899999999999999999999999887665333221 13589999999999999999999998887644322
Q ss_pred hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC
Q 008940 156 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 235 (548)
Q Consensus 156 ~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 235 (548)
... ..-...++.+..+..+++++||+..|.++..|......+..-.-.+.++.++...++.+.+|...||.....++..
T Consensus 208 al~-~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 208 ALY-VHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred HHH-HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 211 1123577788888888999999999999999987766553333335566677777788888999999999999887
Q ss_pred CcchHHHHHh--cCccccccc---------------c--------------------------------h----------
Q 008940 236 EDNVADFIRV--GGVQKLQDG---------------E--------------------------------F---------- 256 (548)
Q Consensus 236 ~~~~~~~~~~--g~i~~L~~~---------------~--------------------------------~---------- 256 (548)
+-.+..+... .++|.|+.+ + +
T Consensus 287 pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~ 366 (885)
T KOG2023|consen 287 PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAF 366 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccc
Confidence 7555544322 334433220 0 0
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh----hhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCC
Q 008940 257 IVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV----AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST 332 (548)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~----~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~ 332 (548)
...-..+|.+.+++.+..+....+++.++.+++. .+..+|+++..+|+.++.+-..-..-.-...+|.|+++|.++
T Consensus 367 ~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DK 446 (885)
T KOG2023|consen 367 SDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDK 446 (885)
T ss_pred ccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccC
Confidence 0011347888999999999999999999988876 678899999999999988754332222224689999999999
Q ss_pred CCccchhhHHHHHHHhhh
Q 008940 333 NPKQQLDGAVALFKLANK 350 (548)
Q Consensus 333 ~~~v~~~a~~~L~~l~~~ 350 (548)
.+-||.-.||+|.+.+.-
T Consensus 447 kplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 447 KPLVRSITCWTLSRYSKW 464 (885)
T ss_pred ccceeeeeeeeHhhhhhh
Confidence 999999999999998764
No 45
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.8e-09 Score=98.22 Aligned_cols=185 Identities=23% Similarity=0.273 Sum_probs=158.4
Q ss_pred cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHH
Q 008940 49 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128 (548)
Q Consensus 49 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 128 (548)
+.+.+-++.|+.-|..++. +-+|...+...|++..++..+++.+.++|+.|+++++..+.++|..++.+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 3457889999999999997 799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCC-hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCcc-hhhhHhc
Q 008940 129 GLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHN-QAGIAHN 204 (548)
Q Consensus 129 ~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~ 204 (548)
..+.+++ ..++.+|..+++.+.+.++.....+...++...|.+.+++ .+..++..++..+..+...... +..+...
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 9998765 4577999999999999999999999999999999999998 5677888999999999966654 3333344
Q ss_pred CChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940 205 GGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 205 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 234 (548)
+....+..+....+.++.+.+..++..+..
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 444556677777778888888877766654
No 46
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.15 E-value=1.4e-09 Score=102.12 Aligned_cols=275 Identities=20% Similarity=0.253 Sum_probs=210.5
Q ss_pred hHHHHHhcCCchHHHHhhccCC--HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHH
Q 008940 30 IKTRVRMEGGIPPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGN 106 (548)
Q Consensus 30 ~~~~i~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~ 106 (548)
.+..+...|++..|++++..++ ..+|..|.+.|..+.. .+|++.+...| +..++.+-+ ....+.+..++.+|.+
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 3455777899999999999988 4569999999999985 88999998886 666666665 3467889999999999
Q ss_pred hhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcC-CchhHHHHHhcCChHHHHHhhCCCCHHHHHHHH
Q 008940 107 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 185 (548)
Q Consensus 107 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~ 185 (548)
+..++++....++..|++..++--....++.+.+.++.+|+|.+-+ ....+..+++...-++|..+..+.|.-++.+||
T Consensus 249 mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred HhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 9999999899999999999999888888999999999999998854 346667888889999999999999989999999
Q ss_pred HHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHH
Q 008940 186 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCV 265 (548)
Q Consensus 186 ~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~ 265 (548)
-+.+.++.+.+....+...|.+..+-.++.+-+|.-. +++. ....+
T Consensus 329 lAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD~---hd~aQ--------------------- 374 (832)
T KOG3678|consen 329 LAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRF----------ARDA---HDYAQ--------------------- 374 (832)
T ss_pred HHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchh----------hhhh---hhhhc---------------------
Confidence 9999999888877778888877666666655554321 1110 00000
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC--Cccc-eeeecCCchHHHHHhhcCCCCccchhhHH
Q 008940 266 AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQR-TIFIDGGGLELLLGLLGSTNPKQQLDGAV 342 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~--~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 342 (548)
-...+-+++|+.+|++.--+.|..++.-++.=+.- ..++ +.+-+.|+|..|.++.++++..-...|..
T Consensus 375 ---------G~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAse 445 (832)
T KOG3678|consen 375 ---------GRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASE 445 (832)
T ss_pred ---------cCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 01123577888999877666666666555544332 2233 57788899999999999877666677778
Q ss_pred HHHHHhhh
Q 008940 343 ALFKLANK 350 (548)
Q Consensus 343 ~L~~l~~~ 350 (548)
+|.-+.+.
T Consensus 446 ALtviGEE 453 (832)
T KOG3678|consen 446 ALTVIGEE 453 (832)
T ss_pred HHHHhccc
Confidence 88777664
No 47
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=7.9e-10 Score=104.16 Aligned_cols=302 Identities=15% Similarity=0.124 Sum_probs=218.8
Q ss_pred HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh
Q 008940 52 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131 (548)
Q Consensus 52 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 131 (548)
..+...|+..|.|++. +-..-..+...+++..|++.|...+.++...+...|-.|+.. .+++..+.+.|.+..|++++
T Consensus 277 eqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klf 354 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLF 354 (791)
T ss_pred HHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhc
Confidence 4556778889999997 566667788889999999999988999999999999999765 66688999999999999999
Q ss_pred hcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHH
Q 008940 132 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL 211 (548)
Q Consensus 132 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~ 211 (548)
...+++++......+-|++. +...+..++..|.+|.+..++.++. -...|...+..++.++..+..+....+++.+.
T Consensus 355 p~~h~dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lm 431 (791)
T KOG1222|consen 355 PIQHPDLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLM 431 (791)
T ss_pred CCCCHHHHHHHHHHhhhccc-cccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999964 5788999999999999999998863 45667888999999998898898888999888
Q ss_pred HhhcC-CChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhh--------------------HHH-----
Q 008940 212 KLLDS-KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATK--------------------DCV----- 265 (548)
Q Consensus 212 ~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~--------------------~~~----- 265 (548)
..+-+ .+.++-.......-|+|.+..+.+.+++..++..|.+..+...... +++
T Consensus 432 k~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~ 511 (791)
T KOG1222|consen 432 KDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAG 511 (791)
T ss_pred HHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 66554 3455555555556688888888777777666665544222111000 000
Q ss_pred -----------HHHHHHHH-----------HhhhhhhhHHHHHHHHh--hhhhhhhhHHHHhhhccCCCccceeeecCCc
Q 008940 266 -----------AKTLKRLE-----------EKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDGGG 321 (548)
Q Consensus 266 -----------~~~~~~~~-----------~~~~~~~~~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~ 321 (548)
.+++..+. .+.+...+|-+-..|.. ...+.+....-+++.++....+...+...+.
T Consensus 512 i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~ 591 (791)
T KOG1222|consen 512 IAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKL 591 (791)
T ss_pred HhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcccc
Confidence 00111110 01111223333333322 2345666777788888888888888888999
Q ss_pred hHHHHHhhcC--CCCccchhhHHHHHHHhhhcccccccc
Q 008940 322 LELLLGLLGS--TNPKQQLDGAVALFKLANKATTLSSVD 358 (548)
Q Consensus 322 i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~i~ 358 (548)
++.|++||+. .+.+.......+...+..+..++..+.
T Consensus 592 i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~mi 630 (791)
T KOG1222|consen 592 IDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMI 630 (791)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999985 445556677777777777755554433
No 48
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.10 E-value=6.9e-09 Score=108.16 Aligned_cols=310 Identities=19% Similarity=0.142 Sum_probs=195.6
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 89 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll 89 (548)
+.-+..++.-|..+.....+.. .+.+.+++++.+.+...+.-+.-++..+...+++.... ++..+.+-+
T Consensus 20 ~~~~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl 88 (526)
T PF01602_consen 20 ISKKKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDL 88 (526)
T ss_dssp HHHHHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhh
Confidence 3445555555555543333322 56778999999999999999999999999765552222 466777888
Q ss_pred ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHH
Q 008940 90 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 169 (548)
Q Consensus 90 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L 169 (548)
.++++.++..|+++++++. .++..+. .++.+.+++.++++.+|+.|+.++..+...+++. +... .++.+
T Consensus 89 ~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l 157 (526)
T PF01602_consen 89 NSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKL 157 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHH
T ss_pred cCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHH
Confidence 8999999999999999996 3554333 5778999999999999999999999998665553 2223 68999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcc
Q 008940 170 IEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ 249 (548)
Q Consensus 170 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~ 249 (548)
..++.++++.++..|+.++..+ ...+....-.-...+..|.+++...++-.+..++..+..++........- ...++
T Consensus 158 ~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~ 234 (526)
T PF01602_consen 158 KQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIE 234 (526)
T ss_dssp HHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHH
T ss_pred hhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHH
Confidence 9999999999999999999999 22111100111123444555667788999999999999998754432200 11111
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHh-----hhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHH
Q 008940 250 KLQDGEFIVQATKDCVAKTLKRLEEK-----IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLEL 324 (548)
Q Consensus 250 ~L~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~ 324 (548)
.+...... ......-.+...+..+ .-..+++.|..++.++++.+|..++.+|..++... . ..+. ..-..
T Consensus 235 ~l~~~l~s--~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~-~~v~-~~~~~ 308 (526)
T PF01602_consen 235 PLLNLLQS--SSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--P-PAVF-NQSLI 308 (526)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--H-HHHG-THHHH
T ss_pred HHHHHhhc--cccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--c-hhhh-hhhhh
Confidence 11110000 0001111111111111 12346777777777777777777777777776654 1 1122 22233
Q ss_pred HHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 325 LLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 325 L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
+..+..++++.+|..+...|..++..
T Consensus 309 ~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 309 LFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred hheecCCCChhHHHHHHHHHhhcccc
Confidence 33334466777777777777777764
No 49
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.7e-07 Score=96.86 Aligned_cols=408 Identities=18% Similarity=0.109 Sum_probs=237.6
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC
Q 008940 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 92 (548)
Q Consensus 13 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~ 92 (548)
-.-|.++|-.++.+=+.. . +-.-..+.+-.+++++++.-|..|+.+|..++.|..+.-...... +++..+..|+++
T Consensus 326 ~~~A~~~lDrlA~~L~g~-~--v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~Dp 401 (1075)
T KOG2171|consen 326 YRAAEQALDRLALHLGGK-Q--VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLNDP 401 (1075)
T ss_pred HHHHHHHHHHHHhcCChh-h--ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcCCC
Confidence 345556666666321111 0 112245566778899999999999999999999877766654443 788889999999
Q ss_pred ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCCchhHHHHHhcCChH-HHH
Q 008940 93 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVR-PLI 170 (548)
Q Consensus 93 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~-~L~ 170 (548)
++.||..|+.+++.++.+-...-+.......++.|+..+.+.. +.+...|+.++.|+....++....-+-.+++. .+.
T Consensus 402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~ 481 (1075)
T KOG2171|consen 402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLL 481 (1075)
T ss_pred CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876554455566678889999888754 68999999999999877665544444456666 444
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC-h---hHHHHHHHHHHhccc--CC----cchH
Q 008940 171 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN-G---SLQHNAAFALYGLAD--NE----DNVA 240 (548)
Q Consensus 171 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-~---~v~~~a~~~L~~l~~--~~----~~~~ 240 (548)
.+++++.+.+++.+..+|+..+...+..-.-.-...++.|...|.+.+ . .++.....+++-++. ++ +...
T Consensus 482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~ 561 (1075)
T KOG2171|consen 482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAE 561 (1075)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHH
Confidence 456678889999999999999976554322112234566667776654 2 233343344443321 21 1222
Q ss_pred HHHHhcCcccccccchhhhhh----hHHHHHHHHHHHHhhhhh-------hhHHHHHHHHhh-h----------------
Q 008940 241 DFIRVGGVQKLQDGEFIVQAT----KDCVAKTLKRLEEKIHGR-------VLNHLLYLMRVA-E---------------- 292 (548)
Q Consensus 241 ~~~~~g~i~~L~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-------~~~~L~~ll~~~-~---------------- 292 (548)
.+++.. .....+.... ..+....-.++.++.... ++++++.-.+-. +
T Consensus 562 eliqll-----~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~ 636 (1075)
T KOG2171|consen 562 ELIQLL-----LELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLD 636 (1075)
T ss_pred HHHHHH-----HhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccc
Confidence 222221 1111111111 122222223333332222 222222211110 0
Q ss_pred -------------------hhhhhhHHHHhhhccCCCccceeeecCCchH-HHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940 293 -------------------KGVQRRVALALAHLCSPDDQRTIFIDGGGLE-LLLGLLGSTNPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 293 -------------------~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 352 (548)
-+-+..|+.+|+.++..........-.+.++ .+..+.-..+..||..|+.++.++.....
T Consensus 637 ~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~ 716 (1075)
T KOG2171|consen 637 GWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCAL 716 (1075)
T ss_pred cchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 0225667778877776543222112223444 23334446678899999999999887522
Q ss_pred ccccccCCCCCCCccccchHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHH
Q 008940 353 TLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVF 432 (548)
Q Consensus 353 ~~~~i~~~~~~~~~~i~~~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~ 432 (548)
... .+... -+..-+.+|..+..+...+ +..+++.
T Consensus 717 ~A~--------------------------------~~~p~-----~l~~l~~~~~~~l~~~l~~---------E~e~~vl 750 (1075)
T KOG2171|consen 717 KAC--------------------------------QGGPE-----YLKQLWEAIRPALIKALEE---------EPETEVL 750 (1075)
T ss_pred HHh--------------------------------ccChH-----HHHHHHHHHHHHHHHHhhc---------CCcHHHH
Confidence 111 11111 1222333333333222111 2344444
Q ss_pred HHHHHHHh-----cCccccchHhHHHHHHHHHHhChHhHHHHHHHHHH
Q 008940 433 ELMMRFIY-----TGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIA 475 (548)
Q Consensus 433 ~~~l~~~Y-----t~~~~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~ 475 (548)
..+++-++ .|...+.++....+...-........++.+...=.
T Consensus 751 ~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~ 798 (1075)
T KOG2171|consen 751 SEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEE 798 (1075)
T ss_pred HHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45555444 36677888888888888888888888877755443
No 50
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.05 E-value=1.5e-08 Score=99.64 Aligned_cols=343 Identities=16% Similarity=0.165 Sum_probs=238.0
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCC--HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
..|+...+|..-..++.-++++.+..+++.|.++.|..+++..+ .+.+...+.++..+..+.......+.+.+.++.|
T Consensus 21 ~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~L 100 (678)
T KOG1293|consen 21 LDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKL 100 (678)
T ss_pred CCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHH
Confidence 44666678888888888788888888999999999999997654 6677777778888887788888999999999999
Q ss_pred HHHhccCC-hHHHHHHHHHHHHhhcCChhHHHH--HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008940 86 ILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKE--VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ 162 (548)
Q Consensus 86 v~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~--~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 162 (548)
+.++.+.| ..++...+++++++...++..-.. ......++.+..++..+.......-+.....++ +.+..+....+
T Consensus 101 l~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s-~~~~hq~Il~N 179 (678)
T KOG1293|consen 101 LQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS-STKDHQLILCN 179 (678)
T ss_pred HHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc-ccchhhheecc
Confidence 99999888 889999999999998765433222 222345666666665344445555555555555 44677778888
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHH---HhhcCCcch-----hhhHhcCChH--HHHHhhcCCChhHHHHHHHHHHhc
Q 008940 163 RGAVRPLIEMLQSPDVQLREMSAFALG---RLAQDMHNQ-----AGIAHNGGLV--PLLKLLDSKNGSLQHNAAFALYGL 232 (548)
Q Consensus 163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~---~l~~~~~~~-----~~~~~~~~l~--~L~~ll~~~~~~v~~~a~~~L~~l 232 (548)
.|+.+.+.-++...+..+|..|..+++ ++..+++.. ..+.+.|..+ .+.+++++++...+..++.+|.++
T Consensus 180 a~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~ 259 (678)
T KOG1293|consen 180 AGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPY 259 (678)
T ss_pred ccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHH
Confidence 999999888888878889999999999 666555432 2234445554 466788888877777778777777
Q ss_pred ccCC---cc---hHHHHHhc----------------Ccccccc--------cch---------h------hhhhhHHHH-
Q 008940 233 ADNE---DN---VADFIRVG----------------GVQKLQD--------GEF---------I------VQATKDCVA- 266 (548)
Q Consensus 233 ~~~~---~~---~~~~~~~g----------------~i~~L~~--------~~~---------~------~~~~~~~~~- 266 (548)
.+.. +. -..+.+.| ++..+-. ..+ . ......|..
T Consensus 260 ~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~s 339 (678)
T KOG1293|consen 260 LRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICAS 339 (678)
T ss_pred HhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHH
Confidence 4322 00 00001111 1111000 000 0 000000000
Q ss_pred -----------------------------------------------------------HHHHHHHHh--------hhhh
Q 008940 267 -----------------------------------------------------------KTLKRLEEK--------IHGR 279 (548)
Q Consensus 267 -----------------------------------------------------------~~~~~~~~~--------~~~~ 279 (548)
.+....... -...
T Consensus 340 l~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~d 419 (678)
T KOG1293|consen 340 LAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRND 419 (678)
T ss_pred HhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccch
Confidence 000001111 1224
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHhhhccCC-CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 280 VLNHLLYLMRVAEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 280 ~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
+..+|++++..++..++..++++|+|++.. .+-+..++..||++.+..++.+.++.+|..+.|+|+++.-+.
T Consensus 420 v~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~ 492 (678)
T KOG1293|consen 420 VAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC 492 (678)
T ss_pred hHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc
Confidence 889999999889999999999999999754 667778999999999999999999999999999999997654
No 51
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=5.4e-09 Score=109.13 Aligned_cols=332 Identities=17% Similarity=0.150 Sum_probs=211.0
Q ss_pred hhhhHHHHHHHHHHHHHhhh-----ChhhHHHHHhcCCchHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhhHhhhcC
Q 008940 7 RAVNSVIRRAADAITNLAHE-----NSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECN 80 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 80 (548)
...|++|.-|+..+++++.. +.+.+.. +-..|+..+. .+.+.+|.+-+.++..+++..-.. ...+
T Consensus 48 ~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s-----iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPe 118 (1075)
T KOG2171|consen 48 SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS-----IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE----KWPE 118 (1075)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH-----HHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc----chHH
Confidence 44567777777777777632 2222332 2234555444 456889999999999999732221 4567
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 160 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 160 (548)
.++.|++..+++++..|+.|+.+|+++...-.+. ..-.-..+.+.+.+.+.+++..++..+++++..++...+.+....
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~-~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~ 197 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNT-LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEV 197 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc-cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHH
Confidence 7888889999999999999999999996543321 111111345666777777776699999999998886543222222
Q ss_pred Hh-cCChHHHHHhh----CCCCHHHHHHHHHHHHHhhcCCcc--hhhhHhcCChHHHHHhhcCC--ChhHHHHHHHHHHh
Q 008940 161 VQ-RGAVRPLIEML----QSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYG 231 (548)
Q Consensus 161 ~~-~g~v~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~ 231 (548)
.. ...+|.++..+ ..++......+..+|..++...+. +..+. ..+...+....+. ++.+|..|+..|..
T Consensus 198 ~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs 275 (1075)
T KOG2171|consen 198 DKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVS 275 (1075)
T ss_pred HHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 22 23455555544 456777788888999998876654 22222 2344445555554 57899999999999
Q ss_pred cccCCcchHHHHHhcCccccc----c------cc--hh--hh-------hhhHHHHHHHHHHHHhhhh-----hhhHHHH
Q 008940 232 LADNEDNVADFIRVGGVQKLQ----D------GE--FI--VQ-------ATKDCVAKTLKRLEEKIHG-----RVLNHLL 285 (548)
Q Consensus 232 l~~~~~~~~~~~~~g~i~~L~----~------~~--~~--~~-------~~~~~~~~~~~~~~~~~~~-----~~~~~L~ 285 (548)
++.+.....+.... .+..|+ . .. .. .. +.......+++++.....+ -+++.+-
T Consensus 276 ~~e~Ap~~~k~~~~-~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~ 354 (1075)
T KOG2171|consen 276 LSEYAPAMCKKLAL-LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALE 354 (1075)
T ss_pred HHHhhHHHhhhchh-hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHH
Confidence 88763333222222 222221 1 00 00 00 1112223345555443332 2455555
Q ss_pred HHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 286 YLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 286 ~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
.++++.++.-|.+++.+|+.++.+......=.-...++..+..+++++|.||.+|+.++..++.+-
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 677789999999999999999887543321122457888899999999999999999999998753
No 52
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=4.5e-09 Score=102.95 Aligned_cols=296 Identities=19% Similarity=0.173 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhc----CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 11 SVIRRAADAITNLAHENSSIKTRVRME----GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~----g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
...+.|..+|..+|+++.+.-..-... -.+|.++++.+++++.+|..|+.++....-........-+ ...++.+.
T Consensus 143 n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~i-D~Fle~lF 221 (885)
T KOG2023|consen 143 NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHI-DKFLEILF 221 (885)
T ss_pred cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHH-HHHHHHHH
Confidence 457788999999996555433221111 2478889999999999999999999888753222211111 23677888
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh--cC
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RG 164 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g 164 (548)
.+-+++++++|+..++++.-|....++- -.-.-.++++.+++.-++.++++...||.....++.. +-.+..+.. ..
T Consensus 222 alanD~~~eVRk~vC~alv~Llevr~dk-l~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq-pi~~~~L~p~l~k 299 (885)
T KOG2023|consen 222 ALANDEDPEVRKNVCRALVFLLEVRPDK-LVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ-PICKEVLQPYLDK 299 (885)
T ss_pred HHccCCCHHHHHHHHHHHHHHHHhcHHh-cccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC-cCcHHHHHHHHHH
Confidence 8888999999999999999997554431 1111235777888888889999999999999999854 444443322 34
Q ss_pred ChHHHHHhhCCC--------------------------------------------------------CHHHHHHHHHHH
Q 008940 165 AVRPLIEMLQSP--------------------------------------------------------DVQLREMSAFAL 188 (548)
Q Consensus 165 ~v~~L~~ll~~~--------------------------------------------------------~~~v~~~a~~~L 188 (548)
.+|.|+.-+.-+ +..+|+..+.+|
T Consensus 300 liPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaL 379 (885)
T KOG2023|consen 300 LIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAAL 379 (885)
T ss_pred HHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHH
Confidence 555555544210 023555555555
Q ss_pred HHhhcCCcchhhhHhcCChHH----HHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHH
Q 008940 189 GRLAQDMHNQAGIAHNGGLVP----LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDC 264 (548)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~l~~----L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~ 264 (548)
.-|+..- ....++. |-+.|.+.+..+++.+..+|+.++.... .|.++-|
T Consensus 380 DVLanvf-------~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM-------~g~~p~L------------- 432 (885)
T KOG2023|consen 380 DVLANVF-------GDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM-------QGFVPHL------------- 432 (885)
T ss_pred HHHHHhh-------HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh-------hhcccch-------------
Confidence 5554221 1123334 4444556778899999999998875421 1333332
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC---CccceeeecCCchHHHHHhhcCCCCccchhhH
Q 008940 265 VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP---DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGA 341 (548)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 341 (548)
...++.++.+|.++.+.||..+||+|+.++.. .+..+.+. -.+.-|++-+-++|..||++|+
T Consensus 433 -------------peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAc 497 (885)
T KOG2023|consen 433 -------------PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAAC 497 (885)
T ss_pred -------------HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHH
Confidence 13788999999999999999999999998753 22222221 1233334444478899999999
Q ss_pred HHHHHHhhhc
Q 008940 342 VALFKLANKA 351 (548)
Q Consensus 342 ~~L~~l~~~~ 351 (548)
.++.-+-+..
T Consensus 498 sAfAtleE~A 507 (885)
T KOG2023|consen 498 SAFATLEEEA 507 (885)
T ss_pred HHHHHHHHhc
Confidence 9999987764
No 53
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.02 E-value=3.6e-09 Score=101.27 Aligned_cols=233 Identities=17% Similarity=0.215 Sum_probs=159.5
Q ss_pred HHHHHHHHHhhhChhhHHHHHhcCC---chHHHHhhcc--CCHHHHHHHHHHHHHhhccCcchhhHhhhc------CChH
Q 008940 15 RAADAITNLAHENSSIKTRVRMEGG---IPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVEC------NALP 83 (548)
Q Consensus 15 ~a~~~L~~l~~~~~~~~~~i~~~g~---i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------g~i~ 83 (548)
.-+..+..+-...++.+..+.+..+ ...++.+|+. ++.++....+..+..+...++...+.+... ....
T Consensus 29 ~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~ 108 (312)
T PF03224_consen 29 EDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYS 108 (312)
T ss_dssp HHHHHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHH
Confidence 4445555555444444433444433 5666777764 579999999999999998777777666652 3578
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc----CChHHHHHHHHHHHHhhcCCchhHHH
Q 008940 84 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS----CCSESQREAALLLGQFAATDSDCKVH 159 (548)
Q Consensus 84 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~ 159 (548)
++++++..+|.-++..|+.+|..+....+....... .+.++.+++.+.+ ++.+.+..++.+|.++.. .+..|..
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~ 186 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQV 186 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHH
Confidence 889989999999999999999999877655433222 4456777777665 345567889999999985 4899999
Q ss_pred HHhcCChHHHHHhh-----C--CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcC-CChhHHHHHHHHHHh
Q 008940 160 IVQRGAVRPLIEML-----Q--SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYG 231 (548)
Q Consensus 160 ~~~~g~v~~L~~ll-----~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~ 231 (548)
+.+.|+++.+.+++ . ..+.+++..++.++|.|+.+++....+...+.++.|.++++. ..+++.+-++.++.|
T Consensus 187 f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~N 266 (312)
T PF03224_consen 187 FWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRN 266 (312)
T ss_dssp HHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 99999999999999 2 245678999999999999999988888888888889999975 468899999999999
Q ss_pred cccCCc--chHHHHHhcCcc
Q 008940 232 LADNED--NVADFIRVGGVQ 249 (548)
Q Consensus 232 l~~~~~--~~~~~~~~g~i~ 249 (548)
+..... ....++..|+++
T Consensus 267 l~~~~~~~~~~~mv~~~~l~ 286 (312)
T PF03224_consen 267 LLSKAPKSNIELMVLCGLLK 286 (312)
T ss_dssp TTSSSSTTHHHHHHHH-HHH
T ss_pred HHhccHHHHHHHHHHccHHH
Confidence 987655 667776666443
No 54
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.3e-08 Score=102.41 Aligned_cols=257 Identities=16% Similarity=0.164 Sum_probs=191.2
Q ss_pred hHHHHhhccC-CHHHHHHHHHHHHHh-hccCcchhhHhhhcCChHHHHHHhccC-ChHHHHHHHHHHHHhhcCChhHHHH
Q 008940 41 PPLVELLEFT-DTKVQRAAAGALRTL-AFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKE 117 (548)
Q Consensus 41 ~~L~~ll~~~-~~~v~~~a~~~L~~l-~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 117 (548)
..|++-|+.. |+..|..|+.-|..+ +.++++....+--.-.++.|+.+|+++ +.+++..|+++|.+|+...|.-...
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 3444444443 777777777666544 446677666665566899999999865 7899999999999999888888889
Q ss_pred HHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 008940 118 VLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 196 (548)
Q Consensus 118 ~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 196 (548)
++++++||.|+.-|.. ...++.+.++.+|-.+++..+ ..+.++|.+...+..+.--...++..|+.+..|+|..-.
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999876654 568899999999999986543 458889999999998887677899999999999996643
Q ss_pred c--hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHH
Q 008940 197 N--QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 274 (548)
Q Consensus 197 ~--~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~ 274 (548)
. -..+. ..+|.|..+|...+....+.++.++.+++.....- .+.++.
T Consensus 327 sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~-----------------------------~~kLdq 375 (1051)
T KOG0168|consen 327 SDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG-----------------------------PDKLDQ 375 (1051)
T ss_pred CccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC-----------------------------hHHHHH
Confidence 3 23333 47999999999999889999999999987543221 122344
Q ss_pred hhhhhhhHHHHHHHHhhh----hhhhhhHHHHhhhccCC-CccceeeecCCchHHHHHhhcC
Q 008940 275 KIHGRVLNHLLYLMRVAE----KGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGS 331 (548)
Q Consensus 275 ~~~~~~~~~L~~ll~~~~----~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~ 331 (548)
+...+.+....+++.-.. ..+.....+.|..++.+ +-.+..+.+.+....|..++..
T Consensus 376 l~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 376 LCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 555666666666665532 33445566777777776 4466677777888888887764
No 55
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.98 E-value=6.7e-09 Score=108.26 Aligned_cols=312 Identities=18% Similarity=0.182 Sum_probs=196.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
+.+|.++..|+++|++++ +++.... .++.+.+++.++++.||..|+.++..+...+++.... . .++.+.
T Consensus 90 ~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~---~-~~~~l~ 158 (526)
T PF01602_consen 90 SPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED---E-LIPKLK 158 (526)
T ss_dssp SSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG---G-HHHHHH
T ss_pred CCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH---H-HHHHHh
Confidence 456788899999999988 3444432 4578889999999999999999999998755553222 2 588899
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
+++.++++.++..|+.++..+ ..++.... -.-...++.+.+++...++-.+..++..|..++...+..... ...+
T Consensus 159 ~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i 233 (526)
T PF01602_consen 159 QLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRII 233 (526)
T ss_dssp HHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHH
T ss_pred hhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHH
Confidence 999999999999999999999 33232211 111234555566667788888889999999888655444321 4577
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhc
Q 008940 167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG 246 (548)
Q Consensus 167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g 246 (548)
+.+..++++.++.+...++.++..+..... ....+++.|..++.++++.++..++..|..++.... ..+....
T Consensus 234 ~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~--~~v~~~~ 306 (526)
T PF01602_consen 234 EPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP--PAVFNQS 306 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH--HHHGTHH
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc--hhhhhhh
Confidence 888888888888999999999998876544 333568889999999999999999999999987541 1110000
Q ss_pred -CcccccccchhhhhhhHHHHHHHHHHHHhhhh----hhhHHHHHHHHh-hhhhhhhhHHHHhhhccCCCccceeeecCC
Q 008940 247 -GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG----RVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGG 320 (548)
Q Consensus 247 -~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~ 320 (548)
.+..+. ...+.......++-+..+.+. .+++.|...+.. .+++++..++.+++.++...... ..-
T Consensus 307 ~~~~~l~-----~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~----~~~ 377 (526)
T PF01602_consen 307 LILFFLL-----YDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD----AEW 377 (526)
T ss_dssp HHHHHHH-----CSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS----HHH
T ss_pred hhhheec-----CCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch----HHH
Confidence 000000 011111222222222222221 245555555533 35556666666666665422100 012
Q ss_pred chHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 321 GLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 321 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
.++.+++++..+++.+...+...+.++...
T Consensus 378 ~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~ 407 (526)
T PF01602_consen 378 YVDTLLKLLEISGDYVSNEIINVIRDLLSN 407 (526)
T ss_dssp HHHHHHHHHHCTGGGCHCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccccccchHHHHHHHHhhc
Confidence 356666666655555555666666665543
No 56
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.97 E-value=1.8e-08 Score=96.49 Aligned_cols=214 Identities=21% Similarity=0.260 Sum_probs=157.7
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhc------CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCC
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRME------GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNA 81 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~------g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 81 (548)
..+++.+..+..+..+...++.....+... ....+++++++++|..++..|+..|..+....+....... .+.
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~ 147 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEA 147 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHH
Confidence 567899999999999998888776666652 2578888999999999999999999999875444433322 446
Q ss_pred hHHHHHHhcc----CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh-----hc--CChHHHHHHHHHHHHhh
Q 008940 82 LPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-----SS--CCSESQREAALLLGQFA 150 (548)
Q Consensus 82 i~~Lv~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-----~~--~~~~~~~~a~~~L~~l~ 150 (548)
++.+++.+.+ ++.+++..++.+|.++... +..|..+.+.++++.+..++ .+ .+.++.+.++.++|-|+
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS 226 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS 226 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh
Confidence 6777777764 4567789999999999754 88899999999999999999 22 33678899999999997
Q ss_pred cCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCc--chhhhHhcCChHHHHHhhcC--CChhHHHH
Q 008940 151 ATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH--NQAGIAHNGGLVPLLKLLDS--KNGSLQHN 224 (548)
Q Consensus 151 ~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~--~~~~v~~~ 224 (548)
.+++....+.+.+.++.|+++++. ..+.+.+.++.+|.|+..... ....++..|+++.+-.+... .|+++...
T Consensus 227 -F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 227 -FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp -TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred -cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 447777888888899999999986 567899999999999998877 66777776666655555543 35666543
No 57
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.96 E-value=5.6e-09 Score=95.21 Aligned_cols=139 Identities=25% Similarity=0.362 Sum_probs=117.0
Q ss_pred eEEEchHHHHhcccHHHHhhhcCCCCCCCCC----ceecCCCCHHHHHHHHHHHhcCccccchHhHHHHHHHHHHhChHh
Q 008940 390 RRFYAHRICLLASSDAFRAMFDGGYREKDAR----DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEG 465 (548)
Q Consensus 390 ~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~----~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~~a~~~~~~~ 465 (548)
..+|||+.+++ |.+||+.||.|+|.|++.+ ...+|.....+++..++|+|+.+.++.++-+.+++-.|+++-+.+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 45999999998 8889999999999996522 345677888999999999999999999999999999999997652
Q ss_pred ---HHHHHHHHHHh---cCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHHH
Q 008940 466 ---LKRLCEYTIAQ---DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE 529 (548)
Q Consensus 466 ---l~~~c~~~l~~---~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~ 529 (548)
|+......+.+ .++.-++++++..+.......|...+..|+.+|+..+...|+|.+.-+...+.
T Consensus 380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s~~r 449 (516)
T KOG0511|consen 380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTSVPR 449 (516)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhccch
Confidence 56666555544 35667799999999999999999999999999999999999999875544433
No 58
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.94 E-value=1.1e-07 Score=92.36 Aligned_cols=263 Identities=16% Similarity=0.167 Sum_probs=174.2
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 88 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 88 (548)
.-++..|+..|..+....+.........-....|...++++ +...+.-++.+|..+.. .++.|..+.+.++++.|+++
T Consensus 115 ~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~ 193 (429)
T cd00256 115 QFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKL 193 (429)
T ss_pred hhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHH
Confidence 35678888888888743332211111011223445555543 47788888999999997 68899999999999999999
Q ss_pred hccC--ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCC------chhHHH
Q 008940 89 LRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATD------SDCKVH 159 (548)
Q Consensus 89 l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~------~~~~~~ 159 (548)
|+.. +..++..++.+++-++.. ++..+.+...+.|+.++++++... +++.+.++.+|.|+.... ......
T Consensus 194 L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~ 272 (429)
T cd00256 194 LSNATLGFQLQYQSIFCIWLLTFN-PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQ 272 (429)
T ss_pred HhhccccHHHHHHHHHHHHHHhcc-HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHH
Confidence 9843 568899999999999866 445566677899999999998754 779999999999998642 123345
Q ss_pred HHhcCChHHHHHhhCC--CCHHHHHHHH-------HHHHHhhcC---------------Ccch---------hhhHhcC-
Q 008940 160 IVQRGAVRPLIEMLQS--PDVQLREMSA-------FALGRLAQD---------------MHNQ---------AGIAHNG- 205 (548)
Q Consensus 160 ~~~~g~v~~L~~ll~~--~~~~v~~~a~-------~~L~~l~~~---------------~~~~---------~~~~~~~- 205 (548)
++..|+.+.+-.+... +|+++.+..- .-+..++.. +..+ ..+.+.+
T Consensus 273 mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~ 352 (429)
T cd00256 273 MVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNY 352 (429)
T ss_pred HHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcch
Confidence 5666665544444433 4555443221 111222211 1111 1222222
Q ss_pred -ChHHHHHhhc-CCChhHHHHHHHHHHhcccCC-cchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhH
Q 008940 206 -GLVPLLKLLD-SKNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 282 (548)
Q Consensus 206 -~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
.+..|..+|. +.++.+..-||.=|+.++++. .++..+.+.| +=.
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg---------------------------------~K~ 399 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG---------------------------------GKQ 399 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC---------------------------------cHH
Confidence 2455788885 456777778888888888854 4444333333 456
Q ss_pred HHHHHHHhhhhhhhhhHHHHhhhcc
Q 008940 283 HLLYLMRVAEKGVQRRVALALAHLC 307 (548)
Q Consensus 283 ~L~~ll~~~~~~~~~~a~~aL~~l~ 307 (548)
.++.+|.++++++|.+|+.|+..+.
T Consensus 400 ~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 400 RVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7889999999999999999998774
No 59
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.93 E-value=8.7e-08 Score=94.36 Aligned_cols=309 Identities=15% Similarity=0.121 Sum_probs=203.1
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCC-HHHHHHHHHHHHHhhccCcch---------------
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDEN--------------- 72 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~--------------- 72 (548)
+++.......++..+..+.......+.+.+.++.|.+++.++| ..++...++.+..+.+.++..
T Consensus 66 s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~ 145 (678)
T KOG1293|consen 66 STELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKF 145 (678)
T ss_pred chhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHH
Confidence 3455666777788887777777788888999999999999888 778888888888887643221
Q ss_pred ----------------------------hhHhhhcCChHHHHHHhccCChHHHHHHHHHHH---HhhcCChhHHH----H
Q 008940 73 ----------------------------KNQIVECNALPTLILMLRSEDSAIHYEAVGVIG---NLVHSSPNIKK----E 117 (548)
Q Consensus 73 ----------------------------~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~---~l~~~~~~~~~----~ 117 (548)
+..+.+.|+.+.+.-++...+..+|..|...++ ++...++.... .
T Consensus 146 s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~ 225 (678)
T KOG1293|consen 146 SLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGL 225 (678)
T ss_pred HHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHH
Confidence 112223333334333444445678888888888 77666665322 2
Q ss_pred HHhcCChH--HHHHhhhcCChHHHHHHHHHHHHhhcCC------------------------------------------
Q 008940 118 VLAAGALQ--PVIGLLSSCCSESQREAALLLGQFAATD------------------------------------------ 153 (548)
Q Consensus 118 ~~~~g~i~--~L~~ll~~~~~~~~~~a~~~L~~l~~~~------------------------------------------ 153 (548)
....|+.+ .+.+++++++...+..++.++.++...+
T Consensus 226 L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~ 305 (678)
T KOG1293|consen 226 LKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNV 305 (678)
T ss_pred HhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhh
Confidence 33345554 4556666666555555555555544221
Q ss_pred ---------chhHHHHHhcCChHHHHHhh---------------------------------------------------
Q 008940 154 ---------SDCKVHIVQRGAVRPLIEML--------------------------------------------------- 173 (548)
Q Consensus 154 ---------~~~~~~~~~~g~v~~L~~ll--------------------------------------------------- 173 (548)
+..+....+....+...+++
T Consensus 306 l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~ 385 (678)
T KOG1293|consen 306 LFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCL 385 (678)
T ss_pred hHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccc
Confidence 00000111111112222221
Q ss_pred -CCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc-CCcchHHHHHhcCccc
Q 008940 174 -QSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQK 250 (548)
Q Consensus 174 -~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~ 250 (548)
...|...+..++.++.+++..-.. +..+....+..++++++..++..+...++++|+|+.. ..+.+..|.+.|
T Consensus 386 ~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~n---- 461 (678)
T KOG1293|consen 386 PPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNN---- 461 (678)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcC----
Confidence 112445566666666666644322 3335566778899999999999999999999999976 466677776666
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc--cceeeecCCchHHHHHh
Q 008940 251 LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGL 328 (548)
Q Consensus 251 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~--~~~~~~~~~~i~~L~~l 328 (548)
++..+..++.+.++.+|..+.|+|.++..+.+ .+..+...=+...+..+
T Consensus 462 -----------------------------gId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l 512 (678)
T KOG1293|consen 462 -----------------------------GIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDL 512 (678)
T ss_pred -----------------------------cHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHH
Confidence 56667788889999999999999999987654 33444444456778888
Q ss_pred hcCCCCccchhhHHHHHHHhhh
Q 008940 329 LGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 329 l~~~~~~v~~~a~~~L~~l~~~ 350 (548)
..+++..||..+...|+|+..+
T Consensus 513 ~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 513 INDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HhCCCHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999875
No 60
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.8e-07 Score=94.45 Aligned_cols=202 Identities=21% Similarity=0.236 Sum_probs=154.4
Q ss_pred hhHHHHHHHHHHHHHh-hhChhhHHHHHhcCCchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 9 VNSVIRRAADAITNLA-HENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
.|..|-+|+.-|+.+. .++++.-.-+--.-.+|.|+.+|++. +.+++..|+++|.+|+.--|+....+++++.++.|+
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 4555656665555543 35666555455556789999999875 599999999999999998899999999999999998
Q ss_pred HHh-ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCC-chhHHHHHhcC
Q 008940 87 LML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRG 164 (548)
Q Consensus 87 ~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g 164 (548)
.-| .-.-.++.++++.+|-.|+...+ ..+.+.|++-..+.++.--...+++.|+.+..|.|..- ++....++ .
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--e 335 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--E 335 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--H
Confidence 755 45678999999999999986544 56788999999999998888889999999999999542 22223344 4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc----hhhhHhcCChHHHHHhhc
Q 008940 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN----QAGIAHNGGLVPLLKLLD 215 (548)
Q Consensus 165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~l~~L~~ll~ 215 (548)
.+|.|..+|+..+....+.++-++..++..... -.++...+.+....+++.
T Consensus 336 alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 336 ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 899999999999999999999999998855432 233444455555555553
No 61
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.7e-06 Score=86.83 Aligned_cols=306 Identities=16% Similarity=0.107 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHhhh-ChhhHHHHHhcCCchHHHHhhc--cCCHHHHHHHHHHHHHhhccCcchhhHhhhcC-ChHHHH
Q 008940 11 SVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECN-ALPTLI 86 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~Lv 86 (548)
.+++.++.+|+.+|++ +|+ .-.-....++..++.-.+ .++..+|..|+.+|.+-..-...|-..-.+.+ +++...
T Consensus 145 ~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvc 223 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVC 223 (859)
T ss_pred HHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeee
Confidence 4788999999999964 333 211222345667777554 35688999999999987652222222111222 344555
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchh----------
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC---------- 156 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---------- 156 (548)
+.-.+++.+++..|..+|..|.+-..+.-...+.......-+.-+.+.++++...+....+++|...-+.
T Consensus 224 Eatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~ 303 (859)
T KOG1241|consen 224 EATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQ 303 (859)
T ss_pred ecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666889999999999999998766665555555566777778888999999999999989888421110
Q ss_pred -----HHHH---HhcCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhH
Q 008940 157 -----KVHI---VQRGAVRPLIEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSL 221 (548)
Q Consensus 157 -----~~~~---~~~g~v~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v 221 (548)
...+ .-.+++|.|+++|.. ++......|..||.-++..... .++. ..++-+-+-+++++..-
T Consensus 304 ~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D--~Iv~-~Vl~Fiee~i~~pdwr~ 380 (859)
T KOG1241|consen 304 GLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD--DIVP-HVLPFIEENIQNPDWRN 380 (859)
T ss_pred CCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc--cchh-hhHHHHHHhcCCcchhh
Confidence 0001 113577888888864 2345666666677666544322 1221 22333334566788888
Q ss_pred HHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHH
Q 008940 222 QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL 301 (548)
Q Consensus 222 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~ 301 (548)
+..++.+++.+-..++..... -.-.+.++.++.++.++.-.++..++|
T Consensus 381 reaavmAFGSIl~gp~~~~Lt--------------------------------~iV~qalp~ii~lm~D~sl~VkdTaAw 428 (859)
T KOG1241|consen 381 REAAVMAFGSILEGPEPDKLT--------------------------------PIVIQALPSIINLMSDPSLWVKDTAAW 428 (859)
T ss_pred hhHHHHHHHhhhcCCchhhhh--------------------------------HHHhhhhHHHHHHhcCchhhhcchHHH
Confidence 899999999887765432211 111246788889999888899999999
Q ss_pred HhhhccCCCc-cc-eeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhccc
Q 008940 302 ALAHLCSPDD-QR-TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 353 (548)
Q Consensus 302 aL~~l~~~~~-~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 353 (548)
+++.++..-. .. ........++.+++-+. ..|.+..+++|++.+|++..+.
T Consensus 429 tlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~e 481 (859)
T KOG1241|consen 429 TLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYE 481 (859)
T ss_pred HHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHH
Confidence 9999987532 11 12223345566666664 4688999999999999987653
No 62
>PTZ00429 beta-adaptin; Provisional
Probab=98.84 E-value=6.6e-07 Score=93.83 Aligned_cols=258 Identities=16% Similarity=0.059 Sum_probs=181.6
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 118 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 118 (548)
+.+.+++++.+++.+++......+.+.+..+++.... .+..+.+-+.++++.+|..|+++++++-. ++..+.
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~- 140 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY- 140 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-
Confidence 3456778888999999999999999998755554333 46677888889999999999999999843 433333
Q ss_pred HhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch
Q 008940 119 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 198 (548)
Q Consensus 119 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 198 (548)
.++.+.+.+.+.++-||+.|+.++.++...+++ .+.+.|.++.|.+++.+.++.|..+|+.+|..+....+..
T Consensus 141 ----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~ 213 (746)
T PTZ00429 141 ----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK 213 (746)
T ss_pred ----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence 456788889999999999999999999765543 3445688899999999999999999999999998654432
Q ss_pred hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhh
Q 008940 199 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 278 (548)
Q Consensus 199 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (548)
-. ...+.+..++..+...++..+...+.+|.......+. . ..
T Consensus 214 l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~--e-----------------------------------~~ 255 (746)
T PTZ00429 214 IE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKE--S-----------------------------------AE 255 (746)
T ss_pred hH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcH--H-----------------------------------HH
Confidence 11 2223455566666666777777777777553211110 0 01
Q ss_pred hhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC--ccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 279 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPD--DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 279 ~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
.++..+...|++.++.|..+|+.++.++.... +...... ....+.|+.| .++++++|..+...+..+....
T Consensus 256 ~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~ 328 (746)
T PTZ00429 256 TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLVIF 328 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC
Confidence 35677778888889999999999999887542 1111100 0122455555 3567788888887776666543
No 63
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.8e-06 Score=86.85 Aligned_cols=275 Identities=19% Similarity=0.269 Sum_probs=199.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc--CCHHHHHHHHHHHHHhhccCc------chh-----
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKND------ENK----- 73 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~------~~~----- 73 (548)
.+.++-|+.|++.|-.+++ ..|..+. ..|+++|+..|+. .|+++...++.++.++..+++ +.+
T Consensus 34 sTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~ 109 (970)
T KOG0946|consen 34 STLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDL 109 (970)
T ss_pred ccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHH
Confidence 4557789999999999994 4555544 5788999999986 469999999999999987542 122
Q ss_pred -----hH-hhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCC-hhHHHHHHh-cCChHHHHHhhhcCChHHHHHHHHH
Q 008940 74 -----NQ-IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLA-AGALQPVIGLLSSCCSESQREAALL 145 (548)
Q Consensus 74 -----~~-~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~a~~~ 145 (548)
+. +...+.+..++..+...|-.||..++..+.++.+.. .+.++.+.. ..+|..++.+|.+..+.+|..++..
T Consensus 110 g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLl 189 (970)
T KOG0946|consen 110 GLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILL 189 (970)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHH
Confidence 23 334688999999999999999999999999996554 455665554 5799999999999999999999999
Q ss_pred HHHhhcCCchhHHHHHhcCChHHHHHhhCCC---C-HHHHHHHHHHHHHhhcCC-cchhhhHhcCChHHHHHhhcC---C
Q 008940 146 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSP---D-VQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDS---K 217 (548)
Q Consensus 146 L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~---~-~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~---~ 217 (548)
|..+..+++..+..++=.++...|..++..+ + .-|.+.|+..|.||-.+. .++..+.+.+.++.|..+|.. +
T Consensus 190 L~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~ 269 (970)
T KOG0946|consen 190 LSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFG 269 (970)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCccccc
Confidence 9999999888888887789999999999863 2 247889999999999665 567788888889999988752 2
Q ss_pred Ch-----hHHH-----HHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHH
Q 008940 218 NG-----SLQH-----NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL 287 (548)
Q Consensus 218 ~~-----~v~~-----~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 287 (548)
+. .-++ .++.++..+.. +.+.... ...+...+...+.+..|..+
T Consensus 270 d~Ev~~W~~Qrv~Nv~~~Lqivr~lVs-P~Nt~~~-------------------------~~q~qk~l~ss~ll~~Lc~i 323 (970)
T KOG0946|consen 270 DGEVFGWSTQRVQNVIEALQIVRSLVS-PGNTSSI-------------------------THQNQKALVSSHLLDVLCTI 323 (970)
T ss_pred CcccccccHHHHHHHHHHHHHHHHhcC-CCCcHHH-------------------------HHHHHHHHHHcchHHHHHHH
Confidence 21 1111 22233333322 2221111 01111234455567777777
Q ss_pred HHhh--hhhhhhhHHHHhhhccCCCc
Q 008940 288 MRVA--EKGVQRRVALALAHLCSPDD 311 (548)
Q Consensus 288 l~~~--~~~~~~~a~~aL~~l~~~~~ 311 (548)
+-++ ..+++..+..++++.+++..
T Consensus 324 l~~~~vp~dIltesiitvAevVRgn~ 349 (970)
T KOG0946|consen 324 LMHPGVPADILTESIITVAEVVRGNA 349 (970)
T ss_pred HcCCCCcHhHHHHHHHHHHHHHHhch
Confidence 7664 56778888888888877643
No 64
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.5e-06 Score=78.09 Aligned_cols=291 Identities=16% Similarity=0.119 Sum_probs=187.9
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHh
Q 008940 41 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 120 (548)
Q Consensus 41 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 120 (548)
..++.++.+.++.++..|+..+..++.. ......-.+...++.+.+++++.++ .+.|+.+|.|++.+ +..++.+..
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHH
Confidence 3588999999999999999999999863 2211111223467788889887666 77789999999876 666777776
Q ss_pred cCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh------cCChHHHHHhhCCCCH--HHHHHHHHHHHHhh
Q 008940 121 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ------RGAVRPLIEMLQSPDV--QLREMSAFALGRLA 192 (548)
Q Consensus 121 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~g~v~~L~~ll~~~~~--~v~~~a~~~L~~l~ 192 (548)
. .+..++..+.++........+..|.|+++........... .|.+.........+-. .--...+..+.|++
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 6 8888888888887888899999999999776554443322 3444444444444321 22356778899999
Q ss_pred cCCcchhhhHhcCChHH--HHHhhcCCChhHHH-HHHHHHHhcccCCcchHHHHHhc--CcccccccchhhhhhhHHHHH
Q 008940 193 QDMHNQAGIAHNGGLVP--LLKLLDSKNGSLQH-NAAFALYGLADNEDNVADFIRVG--GVQKLQDGEFIVQATKDCVAK 267 (548)
Q Consensus 193 ~~~~~~~~~~~~~~l~~--L~~ll~~~~~~v~~-~a~~~L~~l~~~~~~~~~~~~~g--~i~~L~~~~~~~~~~~~~~~~ 267 (548)
+....|..+.....++. +..+ .+.+..+++ ..+++|.|.|.+......+...+ +++.++--....
T Consensus 161 ~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagp--------- 230 (353)
T KOG2973|consen 161 QFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGP--------- 230 (353)
T ss_pred hhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCc---------
Confidence 98888877766554333 3333 334445554 56789999998877766665422 222111000000
Q ss_pred HHHHHHHhhhhhhhHHHHHHHH-----hhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcC-CCCccchhhH
Q 008940 268 TLKRLEEKIHGRVLNHLLYLMR-----VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGA 341 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~L~~ll~-----~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~ 341 (548)
+.+.+ -+..-+|.=++++- .+++.+|..-+.+|..|+....+|..+...|+-+++-.+-.. .+++++..+-
T Consensus 231 --ee~sE-Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace 307 (353)
T KOG2973|consen 231 --EELSE-EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACE 307 (353)
T ss_pred --cccCH-HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHH
Confidence 00000 01112222235554 268899999999999999999999998888877766666554 4455555444
Q ss_pred HHHHHHhh
Q 008940 342 VALFKLAN 349 (548)
Q Consensus 342 ~~L~~l~~ 349 (548)
....-+..
T Consensus 308 ~vvq~Lv~ 315 (353)
T KOG2973|consen 308 QVVQMLVR 315 (353)
T ss_pred HHHHHHHh
Confidence 44444444
No 65
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=3e-06 Score=76.21 Aligned_cols=235 Identities=17% Similarity=0.159 Sum_probs=161.4
Q ss_pred hhhhhHHHHHHHHHHHHHhhhChhhHHHHH-hcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHH
Q 008940 6 SRAVNSVIRRAADAITNLAHENSSIKTRVR-MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 84 (548)
Q Consensus 6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 84 (548)
...+|.++..|...+..++.. ..+.... +...++.+.+++...++ ...|+.+|.|++. ++..++.+.+. .+..
T Consensus 13 ~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~-~~k~ 86 (353)
T KOG2973|consen 13 HSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQD-LLKV 86 (353)
T ss_pred ccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHH-HHHH
Confidence 456789999999999999843 3333222 22456778889987776 7789999999998 67788888777 8888
Q ss_pred HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHh------cCChHHHHHhhhcCCh--HHHHHHHHHHHHhhcCCchh
Q 008940 85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA------AGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSDC 156 (548)
Q Consensus 85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~g~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~~ 156 (548)
++..+.++....-...+.+|.|++.+.......+.. .|.+.........+.. .-....+..+.|+++. +..
T Consensus 87 l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~-~~g 165 (353)
T KOG2973|consen 87 LMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQF-EAG 165 (353)
T ss_pred HHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhh-hhh
Confidence 888888888888999999999999987766554433 3344444444444332 3446677888999754 666
Q ss_pred HHHHHhcCChH--HHHHhhCCCCHHHH-HHHHHHHHHhhcCCcchhhhHhcC--ChHH-H--------------------
Q 008940 157 KVHIVQRGAVR--PLIEMLQSPDVQLR-EMSAFALGRLAQDMHNQAGIAHNG--GLVP-L-------------------- 210 (548)
Q Consensus 157 ~~~~~~~g~v~--~L~~ll~~~~~~v~-~~a~~~L~~l~~~~~~~~~~~~~~--~l~~-L-------------------- 210 (548)
|..+.+...++ .+.. +.+.+..+| ...+++|.|+|.+...+..+.+.+ .++. |
T Consensus 166 R~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~e 244 (353)
T KOG2973|consen 166 RKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVE 244 (353)
T ss_pred hhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHh
Confidence 66666554333 2333 333555665 577899999998887776665522 1222 1
Q ss_pred HHhhc-----CCChhHHHHHHHHHHhcccCCcchHHHHHhcCc
Q 008940 211 LKLLD-----SKNGSLQHNAAFALYGLADNEDNVADFIRVGGV 248 (548)
Q Consensus 211 ~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i 248 (548)
++++. .+++.++..-+.+|..||....+++.+...|+-
T Consensus 245 LQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvY 287 (353)
T KOG2973|consen 245 LQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVY 287 (353)
T ss_pred hhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCch
Confidence 12332 346788889999999999888888887766643
No 66
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=1e-06 Score=91.12 Aligned_cols=181 Identities=16% Similarity=0.166 Sum_probs=157.3
Q ss_pred HHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-
Q 008940 55 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS- 133 (548)
Q Consensus 55 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~- 133 (548)
|.+|+..|+....-.+-....-..-|+.|..+++|.++-.++|-.-+.+...+...++.++..+++.++-..+++.+..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 5677888888877667777778888999999999999999999999999999877779999999999888888888877
Q ss_pred C--ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHH
Q 008940 134 C--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVP 209 (548)
Q Consensus 134 ~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~ 209 (548)
. +++-+..|+.+|+.++.+.+-.+....+.+.+...+..|.++ .+-++.+++-+|+.|-.+.+. +-.-.+.++-+.
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 2 257889999999999999888888899999999999999985 788999999999999977654 444566788899
Q ss_pred HHHhhcCCChhHHHHHHHHHHhcccC
Q 008940 210 LLKLLDSKNGSLQHNAAFALYGLADN 235 (548)
Q Consensus 210 L~~ll~~~~~~v~~~a~~~L~~l~~~ 235 (548)
|..+|.++-++|+..|+.+|+.+..+
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999764
No 67
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.63 E-value=3.6e-06 Score=79.06 Aligned_cols=262 Identities=17% Similarity=0.165 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhcC-CchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940 11 SVIRRAADAITNLAHENSSIKTRVRMEG-GIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 88 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g-~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 88 (548)
-+.+.+.+.++.++......-. ..+.. ....|...+++ .+++-...++++|..+.. -++.|-.+...+++..++..
T Consensus 129 ~iv~~~~~Ils~la~~g~~~~~-~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~ 206 (442)
T KOG2759|consen 129 FIVEMSFRILSKLACFGNCKME-LSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRI 206 (442)
T ss_pred HHHHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHH
Confidence 3445566777777642221111 00000 12234445555 567788899999999998 69999999999999999998
Q ss_pred hc--cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCCc------hhHHH
Q 008940 89 LR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDS------DCKVH 159 (548)
Q Consensus 89 l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~------~~~~~ 159 (548)
+. ..+-.++.+.+.+++.|+.. +...+.+...+.|+.|.++++... ++|.+.++.++.|++...+ .....
T Consensus 207 l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~ 285 (442)
T KOG2759|consen 207 LASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQ 285 (442)
T ss_pred HhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 84 34678999999999999765 555677777899999999998754 7799999999999997664 33345
Q ss_pred HHhcCChHHHHHhhCC--CCHHHHHHHHHHHH-------Hhhc---------------CCcc-hhhhH--------hc--
Q 008940 160 IVQRGAVRPLIEMLQS--PDVQLREMSAFALG-------RLAQ---------------DMHN-QAGIA--------HN-- 204 (548)
Q Consensus 160 ~~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~-------~l~~---------------~~~~-~~~~~--------~~-- 204 (548)
++..++.+.+-.+-+. +|+++....-..-. .|+. ++.. ...+. +.
T Consensus 286 mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnenny 365 (442)
T KOG2759|consen 286 MVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNY 365 (442)
T ss_pred HHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccH
Confidence 5555555555444433 45554433222111 1221 1111 11121 11
Q ss_pred CChHHHHHhhcCCC-hhHHHHHHHHHHhcccC-CcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhH
Q 008940 205 GGLVPLLKLLDSKN-GSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 282 (548)
Q Consensus 205 ~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
..+..|+.+|+..+ |.+..-||.=++.+.++ ++++..+.+.| +=+
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~g---------------------------------gKe 412 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYG---------------------------------GKE 412 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhc---------------------------------hHH
Confidence 23566788887654 77777888888888774 55554444444 667
Q ss_pred HHHHHHHhhhhhhhhhHHHHhhhccC
Q 008940 283 HLLYLMRVAEKGVQRRVALALAHLCS 308 (548)
Q Consensus 283 ~L~~ll~~~~~~~~~~a~~aL~~l~~ 308 (548)
.++.+|.++|++||.+|+.|+..+..
T Consensus 413 ~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 413 RVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 88899999999999999999987754
No 68
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=3.1e-06 Score=76.66 Aligned_cols=281 Identities=16% Similarity=0.149 Sum_probs=199.2
Q ss_pred CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchh----hHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChh
Q 008940 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK----NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 113 (548)
Q Consensus 38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~ 113 (548)
+..+.|-.-|..++..++..++..++.+..+.+.|. ..+++.|+++.++.++..+|.++...|...+..++.. +.
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-pa 160 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PA 160 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HH
Confidence 455666677778899999999999999988655332 3455789999999999999999999999999999876 54
Q ss_pred HHHHHHhcCChHHH--HHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHH
Q 008940 114 IKKEVLAAGALQPV--IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGR 190 (548)
Q Consensus 114 ~~~~~~~~g~i~~L--~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~ 190 (548)
.-+.+.+......+ ..+....+.-++......+..+.+-++......-+.|.+..|..-|+. +|.-++..+......
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 45666666655543 333444455566777778888888888888888889999999998887 677889999999999
Q ss_pred hhcCCcchhhhHhcCChHHHHHhhcCC--ChhHHHHHHHHHHhcccCCcc----hHHHHHhcCcccccccchhhhhhhHH
Q 008940 191 LAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLADNEDN----VADFIRVGGVQKLQDGEFIVQATKDC 264 (548)
Q Consensus 191 l~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~----~~~~~~~g~i~~L~~~~~~~~~~~~~ 264 (548)
|+.....+..+.+.|.++.+.+.+.-. +|--.-.++...+.+-.+... -+++++.
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicea------------------- 301 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEA------------------- 301 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHH-------------------
Confidence 999988898888889888888887632 333233344444444322211 1111110
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCc--hHHHHHhhcCCC-CccchhhH
Q 008940 265 VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGG--LELLLGLLGSTN-PKQQLDGA 341 (548)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~--i~~L~~ll~~~~-~~v~~~a~ 341 (548)
+ .-++...+......|++.+..|..+++.+-++.++.+.+...|- ...++.-..+.+ ..-+..+.
T Consensus 302 -------l-----iiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaai 369 (524)
T KOG4413|consen 302 -------L-----IIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAI 369 (524)
T ss_pred -------H-----HHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHH
Confidence 0 01344445667778999999999999999999888877776553 233333333333 33367788
Q ss_pred HHHHHHhhh
Q 008940 342 VALFKLANK 350 (548)
Q Consensus 342 ~~L~~l~~~ 350 (548)
.+|.+++..
T Consensus 370 haLaaIage 378 (524)
T KOG4413|consen 370 HALAAIAGE 378 (524)
T ss_pred HHHHHhhcc
Confidence 888888764
No 69
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=2.4e-06 Score=82.77 Aligned_cols=312 Identities=13% Similarity=0.092 Sum_probs=201.6
Q ss_pred cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH
Q 008940 37 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 116 (548)
Q Consensus 37 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 116 (548)
.+++++++..+.+++..+|..||..+.|++.. ........-..+...+-++..+.+..++..| ..+-.+..+-..-+.
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESA 160 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccc
Confidence 47899999999999999999999999999963 2222222223355566666666666665443 333333211000001
Q ss_pred -HHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940 117 -EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 195 (548)
Q Consensus 117 -~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 195 (548)
.+.-.+.+|.|-.-+...++.+|...+..|.-+-+. |+..-.-.-...++.|+..|.+++++++..+-.+++++-..-
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI 239 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI 239 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 122234566666666667888998888888887433 333222233567888999999999999988888777766443
Q ss_pred cchhhh-HhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcC----cccccccchhhhhhhHHHHHHHH
Q 008940 196 HNQAGI-AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG----VQKLQDGEFIVQATKDCVAKTLK 270 (548)
Q Consensus 196 ~~~~~~-~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~----i~~L~~~~~~~~~~~~~~~~~~~ 270 (548)
.+.... -....++.++.-+.++++.++..|+.-|..+..-....-...-.|+ +|.+.+.+.. ....|......
T Consensus 240 ~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~--~i~~~a~~~n~ 317 (675)
T KOG0212|consen 240 RSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEM--SIKEYAQMVNG 317 (675)
T ss_pred hcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccc--cHHHHHHHHHH
Confidence 333222 2234567788888999999999888777777654333333333343 3333322111 11222221111
Q ss_pred HHHHh---------hh-hhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhh
Q 008940 271 RLEEK---------IH-GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDG 340 (548)
Q Consensus 271 ~~~~~---------~~-~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 340 (548)
.+-.. ++ +.++..+...+.+...+.|..++.-+..+-....++-........+.|+.-|++++.+|...+
T Consensus 318 ~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~ 397 (675)
T KOG0212|consen 318 LLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLA 397 (675)
T ss_pred HHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHH
Confidence 11111 22 246777788888889999999999999998777777777777888999999999999999999
Q ss_pred HHHHHHHhhhccc
Q 008940 341 AVALFKLANKATT 353 (548)
Q Consensus 341 ~~~L~~l~~~~~~ 353 (548)
...+.+++.+...
T Consensus 398 L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 398 LSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHhcCccc
Confidence 9999999987543
No 70
>PTZ00429 beta-adaptin; Provisional
Probab=98.60 E-value=1.9e-05 Score=83.05 Aligned_cols=284 Identities=14% Similarity=0.048 Sum_probs=174.7
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 119 (548)
+..+.+-++++|+.+|..|++++..+-. ++..+. .++.+.+.+.+.++-||+.|+.++.++...+++ .+.
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~ 176 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFY 176 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---ccc
Confidence 4566777788899999999999988774 332222 456677888899999999999999999765553 344
Q ss_pred hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchh
Q 008940 120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 199 (548)
Q Consensus 120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 199 (548)
+.|.++.|.+++.+.++.+...|+.+|..+...++... -...+.+..++..+.+-++-.+...+.+|.... +....
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~ 252 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKE 252 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcH
Confidence 56788999999999999999999999999976544321 223455677777777666666666666664422 21111
Q ss_pred hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC--cchHHHH-HhcCcccccccchhhhhhhHHHHHHHHHHHHhh
Q 008940 200 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE--DNVADFI-RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 276 (548)
Q Consensus 200 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~-~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (548)
.. ...+..+...|++.++.|...|+.++.++.... +...... +.+ .+|+.... ......--.+.++..+.
T Consensus 253 e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~--~pLv~L~s---s~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 253 SA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVN--TALLTLSR---RDAETQYIVCKNIHALL 325 (746)
T ss_pred HH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH--HHHHHhhC---CCccHHHHHHHHHHHHH
Confidence 11 235666778888999999999999999987642 2112211 111 11111100 00011111222222221
Q ss_pred h--hhhhHHHHHHH---HhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 277 H--GRVLNHLLYLM---RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 277 ~--~~~~~~L~~ll---~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
. ..++..-+... .+....++...+..|..++....... .+.-|.....+.+.+.+..+..++++++.+
T Consensus 326 ~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~------IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 326 VIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPE------ILKELAEYASGVDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred HHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHH------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 1 11222222211 12233467777777777776554332 234455555566677788888888888765
No 71
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.57 E-value=5.4e-07 Score=70.47 Aligned_cols=131 Identities=18% Similarity=0.190 Sum_probs=110.4
Q ss_pred CchHHHHhh-ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940 39 GIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 117 (548)
Q Consensus 39 ~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 117 (548)
.+..|+.-. ...+.+.++....-|.|.+. +|.|...+.+.++++.++..+..++..+++.++..|+|+|.+ +...+.
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~ 94 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKF 94 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHH
Confidence 344555433 45678899999999999996 899999999999999999999999999999999999999977 667789
Q ss_pred HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHH
Q 008940 118 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 171 (548)
Q Consensus 118 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ 171 (548)
+.+.+++|.++..++++...+...++.++..++......+..+....+++.+..
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r 148 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR 148 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence 999999999999999999999999999999998776666666655444444433
No 72
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.57 E-value=1.3e-06 Score=82.75 Aligned_cols=172 Identities=20% Similarity=0.219 Sum_probs=142.1
Q ss_pred hHhhhcCChHHHHHHhccCChH--HHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh-cCChHHHHHHHHHHHHhh
Q 008940 74 NQIVECNALPTLILMLRSEDSA--IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFA 150 (548)
Q Consensus 74 ~~~~~~g~i~~Lv~ll~~~~~~--v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~ 150 (548)
+.+...|+++.|++++..++.+ ++..+.++|..+.. .++++.+...| +..++.+.+ .+.++..+..+.+|.++.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 3455678999999999988654 58999999999864 56678888877 555555554 345788899999999999
Q ss_pred cCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC--cchhhhHhcCChHHHHHhhcCCChhHHHHHHHH
Q 008940 151 ATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM--HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 228 (548)
Q Consensus 151 ~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 228 (548)
.++++....++..|+++.++...+..+|.+..+++-+|+|++... ..++.+++..+-+.|+.+..+.++-.+.+||.+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 998899999999999999999999999999999999999998554 447788888888888888888888889999999
Q ss_pred HHhcccCCcchHHHHHhcCc
Q 008940 229 LYGLADNEDNVADFIRVGGV 248 (548)
Q Consensus 229 L~~l~~~~~~~~~~~~~g~i 248 (548)
.+-++.+.+.-..+.+.|.+
T Consensus 331 V~vlat~KE~E~~VrkS~Tl 350 (832)
T KOG3678|consen 331 VAVLATNKEVEREVRKSGTL 350 (832)
T ss_pred HhhhhhhhhhhHHHhhccch
Confidence 99999988776666666643
No 73
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.3e-05 Score=71.19 Aligned_cols=313 Identities=17% Similarity=0.155 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHHhhhChhh----HHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH-
Q 008940 11 SVIRRAADAITNLAHENSSI----KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL- 85 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~----~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L- 85 (548)
.++.-+|..+..+..+.+.+ -..+...|+.+.++..+..+|.++...|...+..++. -+.....+...+..+.+
T Consensus 97 sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlh 175 (524)
T KOG4413|consen 97 SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLH 175 (524)
T ss_pred hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHH
Confidence 45666777777777554422 2334577889999999999999999999999999998 57777777777766654
Q ss_pred -HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCchhHHHHHhc
Q 008940 86 -ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQR 163 (548)
Q Consensus 86 -v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 163 (548)
..+-..-+.-.|..+...+..+.+-+++........|.+..|..-++. .+.-++..+......|+.. ...+..+.+.
T Consensus 176 lrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-eHgreflaQe 254 (524)
T KOG4413|consen 176 LRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EHGREFLAQE 254 (524)
T ss_pred HhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hhhhhhcchh
Confidence 334444566788889999999999889988888899999999888876 5666788888888888744 5677778889
Q ss_pred CChHHHHHhhCC--CCHHHHHHHHHHHHHh----hcCCcchhhhHhc--CChHHHHHhhcCCChhHHHHHHHHHHhcccC
Q 008940 164 GAVRPLIEMLQS--PDVQLREMSAFALGRL----AQDMHNQAGIAHN--GGLVPLLKLLDSKNGSLQHNAAFALYGLADN 235 (548)
Q Consensus 164 g~v~~L~~ll~~--~~~~v~~~a~~~L~~l----~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 235 (548)
|+++.+...+.. .+|--+..++...+.+ +...-...++.+. -+++..++++...++..+..|..+++.+.++
T Consensus 255 glIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 255 GLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 999999999864 4444444344333333 3221111111111 1344456677788899999999999999988
Q ss_pred CcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCC---Cc
Q 008940 236 EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSP---DD 311 (548)
Q Consensus 236 ~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~---~~ 311 (548)
.+....+...|- ....+++.-..+ ....-+..+.++|.+++.. +.
T Consensus 335 teGadlllkTgp-------------------------------paaehllarafdqnahakqeaaihaLaaIagelrlkp 383 (524)
T KOG4413|consen 335 TEGADLLLKTGP-------------------------------PAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKP 383 (524)
T ss_pred cchhHHHhccCC-------------------------------hHHHHHHHHHhcccccchHHHHHHHHHHhhccccCCh
Confidence 887766655441 122233322222 2333456667777777642 22
Q ss_pred ccee------------------eecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcccccc
Q 008940 312 QRTI------------------FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSS 356 (548)
Q Consensus 312 ~~~~------------------~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 356 (548)
.|.. -.+..-...+...++.+.++++.++.+.+..++..+|.+..
T Consensus 384 eqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalke 446 (524)
T KOG4413|consen 384 EQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKE 446 (524)
T ss_pred hhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHH
Confidence 2210 01113356667778888999999999999999998887643
No 74
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.6e-05 Score=74.94 Aligned_cols=245 Identities=17% Similarity=0.169 Sum_probs=187.4
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccC-----cc----hhh
Q 008940 4 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-----DE----NKN 74 (548)
Q Consensus 4 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-----~~----~~~ 74 (548)
..|+.+.--+....+-+..++ .-|+....+.+.++++.|+.+|.+.|.++....+..|..++..+ .+ -..
T Consensus 92 eKFmeSE~dLhd~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLid 170 (536)
T KOG2734|consen 92 EKFMESEVDLHDIIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLID 170 (536)
T ss_pred HHHHHhhccHHHHHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHH
Confidence 345666666777888888888 67888888999999999999999999999999999999998631 22 234
Q ss_pred HhhhcCChHHHHHHhccCCh------HHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC--ChHHHHHHHHHH
Q 008940 75 QIVECNALPTLILMLRSEDS------AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLL 146 (548)
Q Consensus 75 ~~~~~g~i~~Lv~ll~~~~~------~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L 146 (548)
.+++.++++.|++.++.-++ .-...+..++-|+....+++...+++.|.+..|+.-+... -......|..+|
T Consensus 171 aLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiL 250 (536)
T KOG2734|consen 171 ALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEIL 250 (536)
T ss_pred HHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 66777899999988873333 3355677788899888888889999999888887755443 245677888888
Q ss_pred HHhhcCCchhHHHHHhcCChHHHHHhhCC---C------CHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC
Q 008940 147 GQFAATDSDCKVHIVQRGAVRPLIEMLQS---P------DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK 217 (548)
Q Consensus 147 ~~l~~~~~~~~~~~~~~g~v~~L~~ll~~---~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~ 217 (548)
.-+...+..++..+....++..++.-+.- . ..+..++...+|+.+...+.++..+....|+....-+++.
T Consensus 251 aillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~- 329 (536)
T KOG2734|consen 251 AILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE- 329 (536)
T ss_pred HHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-
Confidence 88887777788888888888888887741 1 3467788888999999999999999998888765555555
Q ss_pred ChhHHHHHHHHHHhcccCC---cchHHHHHhcCccc
Q 008940 218 NGSLQHNAAFALYGLADNE---DNVADFIRVGGVQK 250 (548)
Q Consensus 218 ~~~v~~~a~~~L~~l~~~~---~~~~~~~~~g~i~~ 250 (548)
....+..++.+|-....++ +++..+++.+|+..
T Consensus 330 Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrt 365 (536)
T KOG2734|consen 330 KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRT 365 (536)
T ss_pred HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHH
Confidence 4455677888888886654 46667776665443
No 75
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=2.3e-05 Score=79.14 Aligned_cols=287 Identities=15% Similarity=0.188 Sum_probs=197.8
Q ss_pred CchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc--CChHHHHHHHHHHHHhhcCCh---
Q 008940 39 GIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP--- 112 (548)
Q Consensus 39 ~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~--~~~~v~~~a~~~L~~l~~~~~--- 112 (548)
.|+.|+.-+.+. -.+-|+.|+++|..+++ ..|..+... ++++|++.|.. .|+++...++.++.++....+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 355566555443 37789999999999985 355555554 78999999974 388999999999999977652
Q ss_pred ---h----------HHHHHH-hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc-hhHHHH-HhcCChHHHHHhhCCC
Q 008940 113 ---N----------IKKEVL-AAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHI-VQRGAVRPLIEMLQSP 176 (548)
Q Consensus 113 ---~----------~~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~-~~~g~v~~L~~ll~~~ 176 (548)
+ +.+.++ ..+.|..++..+...+-.||..++..+.++.+..+ +.+..+ ...-++..++.+|.+.
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds 178 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS 178 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence 1 123333 35889999999999999999999999999876654 344444 4466899999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCC----ChhHHHHHHHHHHhccc-CCcchHHHHHhcCccc
Q 008940 177 DVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSK----NGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQK 250 (548)
Q Consensus 177 ~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~ 250 (548)
.+.+|..++-.|..+..+... +..+.-.+++..|+.++... ..-|...++..|-||-. +..++.-|.+.+.||.
T Consensus 179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r 258 (970)
T KOG0946|consen 179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR 258 (970)
T ss_pred hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence 999999999999999988766 55566678888999999753 24678889999999976 5667777777777766
Q ss_pred ccccch--hhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC-------ccceeeecCCc
Q 008940 251 LQDGEF--IVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-------DQRTIFIDGGG 321 (548)
Q Consensus 251 L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~-------~~~~~~~~~~~ 321 (548)
|.+... ..... .....+..+++. ...++.++..++.+. .+++.+...++
T Consensus 259 L~klL~~f~~~d~-Ev~~W~~Qrv~N---------------------v~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~l 316 (970)
T KOG0946|consen 259 LLKLLSVFEFGDG-EVFGWSTQRVQN---------------------VIEALQIVRSLVSPGNTSSITHQNQKALVSSHL 316 (970)
T ss_pred HHhhcCcccccCc-ccccccHHHHHH---------------------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcch
Confidence 643111 10000 000000001100 012233333333321 13456777888
Q ss_pred hHHHHHhhcCCC--CccchhhHHHHHHHhhhc
Q 008940 322 LELLLGLLGSTN--PKQQLDGAVALFKLANKA 351 (548)
Q Consensus 322 i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~ 351 (548)
+..|+.++.++. .+|+..+..++.+..++.
T Consensus 317 l~~Lc~il~~~~vp~dIltesiitvAevVRgn 348 (970)
T KOG0946|consen 317 LDVLCTILMHPGVPADILTESIITVAEVVRGN 348 (970)
T ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhc
Confidence 999999888763 455777888888887765
No 76
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=3.5e-06 Score=87.27 Aligned_cols=223 Identities=15% Similarity=0.126 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc-
Q 008940 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS- 91 (548)
Q Consensus 13 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~- 91 (548)
|-+|+..|...-.-.+=....-..-|+.|..+++|+++-.+++-.-+-+-..+..-++..+..+++.++-..++..|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 4467777776665455555555667999999999999999888777777677666578888899999899899988875
Q ss_pred C--ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC-ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940 92 E--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 168 (548)
Q Consensus 92 ~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~ 168 (548)
+ +++-|..|+.+|..++.+..--++...+.+.+...+..+.++ .+-.+.+++-+|+.|-.+.+..+-.-.+.+..+.
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 2 468999999999999988777788888889999999999885 5778999999999999998888888888899999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCC----cchhhhH------------hcCCh----HHHHHhhcCCChhHHHHHHHH
Q 008940 169 LIEMLQSPDVQLREMSAFALGRLAQDM----HNQAGIA------------HNGGL----VPLLKLLDSKNGSLQHNAAFA 228 (548)
Q Consensus 169 L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~------------~~~~l----~~L~~ll~~~~~~v~~~a~~~ 228 (548)
|..+|.++-++||..|..||+.+..+. +.+.... -+..+ ..++.+++.+.+-++...+-+
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 999999999999999999999998752 2221111 11222 246667778888888888888
Q ss_pred HHhcccC
Q 008940 229 LYGLADN 235 (548)
Q Consensus 229 L~~l~~~ 235 (548)
|..+...
T Consensus 727 ls~~~~g 733 (1387)
T KOG1517|consen 727 LSHFVVG 733 (1387)
T ss_pred HHHHHHh
Confidence 8888654
No 77
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.49 E-value=2.7e-05 Score=76.39 Aligned_cols=240 Identities=17% Similarity=0.046 Sum_probs=168.0
Q ss_pred CchHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940 39 GIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 117 (548)
Q Consensus 39 ~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 117 (548)
+++.++..|. .++.+++..++.++..... + ..+..|+..|.+.++.++..++..|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------- 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG-------- 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------
Confidence 4667777774 5667777766655543321 1 138899999999999999999999987721
Q ss_pred HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940 118 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 197 (548)
Q Consensus 118 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 197 (548)
.+..+.|..++.+.++.++..++.++...- ....+.+..+|+++++.++..|+.+|+.+...
T Consensus 116 ---~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--- 177 (410)
T TIGR02270 116 ---RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR--- 177 (410)
T ss_pred ---hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence 235778999999999999988887766631 12456888999999999999999999998532
Q ss_pred hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHH---hcCcccccccchhhhhhhHHHHHHHHHHHH
Q 008940 198 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR---VGGVQKLQDGEFIVQATKDCVAKTLKRLEE 274 (548)
Q Consensus 198 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~---~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~ 274 (548)
..++.|...+.+.++.|+..|+.++..+.. +.....+.. ..+.+. .......+..
T Consensus 178 -------~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~--------------~~~l~~~lal 235 (410)
T TIGR02270 178 -------LSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPH--------------RQRLLVLLAV 235 (410)
T ss_pred -------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccH--------------HHHHHHHHHh
Confidence 456678888999999999999999988854 222222211 011100 0000011111
Q ss_pred hhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 275 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 275 ~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
......++.|..+++.+. ++..++.+++.+- ....++.|+..+.+. .++..|..++..+.--.
T Consensus 236 ~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg----------~p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 236 AGGPDAQAWLRELLQAAA--TRREALRAVGLVG----------DVEAAPWCLEAMREP--PWARLAGEAFSLITGMD 298 (410)
T ss_pred CCchhHHHHHHHHhcChh--hHHHHHHHHHHcC----------CcchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence 123357778888887754 8999999998653 345789999988754 39999999999987643
No 78
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.42 E-value=3.1e-07 Score=92.31 Aligned_cols=94 Identities=23% Similarity=0.353 Sum_probs=70.0
Q ss_pred CCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCC------------ceecCCCCHHHHHHHHHHHhcCcc
Q 008940 377 NATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR------------DIEIPNIRWEVFELMMRFIYTGSV 444 (548)
Q Consensus 377 ~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~------------~i~l~~~~~~~~~~~l~~~Yt~~~ 444 (548)
...+.||+|.+|+..|+|||.||+++|+|||.+|...-+.+..+ .|.+++++|..|+.+|+||||+..
T Consensus 555 ~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 555 KDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred ccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence 35678999999999999999999999999999997554333222 455778999999999999999843
Q ss_pred c--------------cchHh-------HHHHHHHHHHhChHhHHHHH
Q 008940 445 D--------------VTLDI-------AQDLLRAADQYLLEGLKRLC 470 (548)
Q Consensus 445 ~--------------~~~~~-------~~~ll~~a~~~~~~~l~~~c 470 (548)
- +-.+| ...+.-.+.+|++.+|....
T Consensus 635 ~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~ 681 (1267)
T KOG0783|consen 635 LSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFS 681 (1267)
T ss_pred cCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhh
Confidence 1 11122 22366677777777766554
No 79
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=1.4e-05 Score=80.43 Aligned_cols=299 Identities=14% Similarity=0.093 Sum_probs=186.8
Q ss_pred hhHHHHHHHHHHHHHhh-hChhhHHHHHhcCCchHHHHhhccCC-HHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHH
Q 008940 9 VNSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFK-NDENKNQIVECNALPTL 85 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L 85 (548)
.|.....|+.++..++. +=|.+.. .+.+..|+.....+. ..+++.++.+|+.+|.+ +++ ...-....++..+
T Consensus 103 ep~~~s~Aaq~va~IA~~ElP~n~w----p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaI 177 (859)
T KOG1241|consen 103 EPRRPSSAAQCVAAIACIELPQNQW----PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAI 177 (859)
T ss_pred CCCccchHHHHHHHHHHhhCchhhC----HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHH
Confidence 34444556666666653 1122211 123344444444443 45899999999999974 233 1111122355566
Q ss_pred HHHhc--cCChHHHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008940 86 ILMLR--SEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ 162 (548)
Q Consensus 86 v~ll~--~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 162 (548)
+.-.+ .++..+|..|+.+|.+--.... ......-..-++...++.-++++.+++..|..+|..+.+-.-+....-..
T Consensus 178 v~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~ 257 (859)
T KOG1241|consen 178 VQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYME 257 (859)
T ss_pred HhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554 4578999999999987643211 11122222335666677778889999999999999998665444444455
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch----hhhHh---------------cCChHHHHHhhcCC------
Q 008940 163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ----AGIAH---------------NGGLVPLLKLLDSK------ 217 (548)
Q Consensus 163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~---------------~~~l~~L~~ll~~~------ 217 (548)
......-+..++++++++...+...=+++|...-.- ....+ .+.+|.|+++|.+.
T Consensus 258 ~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~ 337 (859)
T KOG1241|consen 258 QALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDD 337 (859)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCccc
Confidence 556666677788999999999988888888443210 11111 13345555555431
Q ss_pred -ChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHH----hhh
Q 008940 218 -NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR----VAE 292 (548)
Q Consensus 218 -~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~----~~~ 292 (548)
+......|..+|.-++ ......++++.+.+.+ +++
T Consensus 338 DdWnp~kAAg~CL~l~A----------------------------------------~~~~D~Iv~~Vl~Fiee~i~~pd 377 (859)
T KOG1241|consen 338 DDWNPAKAAGVCLMLFA----------------------------------------QCVGDDIVPHVLPFIEENIQNPD 377 (859)
T ss_pred ccCcHHHHHHHHHHHHH----------------------------------------HHhcccchhhhHHHHHHhcCCcc
Confidence 1223333333333333 2233346666667666 367
Q ss_pred hhhhhhHHHHhhhccCCCc-cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940 293 KGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 293 ~~~~~~a~~aL~~l~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 352 (548)
..-|..|+.+++.+-.+++ .+-.-+..+++|.++.++.++.-.++..++|+++++++...
T Consensus 378 wr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 378 WRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred hhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 8888999999999988776 44444556899999999998888889999999999999754
No 80
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.36 E-value=3.5e-06 Score=73.98 Aligned_cols=94 Identities=29% Similarity=0.445 Sum_probs=80.4
Q ss_pred EEEEeCCeEEEchHHHHhcccHHHHhhhcCCCC--CCCCCceecCCCCHHHHHHHHHHHhcCccccc--hHhHHHHHHHH
Q 008940 383 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVDVT--LDIAQDLLRAA 458 (548)
Q Consensus 383 v~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~--~~~~~~ll~~a 458 (548)
+.+.+||..|..++.-|.-...||+.|+..++. ...++.|-++ =+|.-|+.+|+||-.|.+.++ ...+.+|+.=|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID-RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA 85 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID-RSPKHFDTILNFMRDGDVDLPESEKELKELLREA 85 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec-CChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence 557889999999999999999999999998764 2334567775 499999999999999988776 55688999999
Q ss_pred HHhChHhHHHHHHHHHHhc
Q 008940 459 DQYLLEGLKRLCEYTIAQD 477 (548)
Q Consensus 459 ~~~~~~~l~~~c~~~l~~~ 477 (548)
.+|.++.|.+.|...+...
T Consensus 86 ~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 86 EFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHhhHHHHHHHHHHHhhhc
Confidence 9999999999999987653
No 81
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=8.7e-06 Score=80.52 Aligned_cols=331 Identities=16% Similarity=0.102 Sum_probs=203.3
Q ss_pred hhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
+..++.+|+....+|..+...... . ...-..+.+.++++.++..-+..+...+..+.. ......+.+.+++..+
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~-~---~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~--g~~i~~~~~~~~l~~l 179 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKG-L---SGEYVLELLLELLTSTKIAERAGAAYGLAGLVN--GLGIESLKEFGFLDNL 179 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhc-c---CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHc--CcHHhhhhhhhHHHHH
Confidence 445667777777777766531111 0 111234567788888888889999999998885 4455666677888899
Q ss_pred HHHhccCChHHHHH-HHHHHHHhhcCChhHHHHHHhcCC---hHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHH
Q 008940 86 ILMLRSEDSAIHYE-AVGVIGNLVHSSPNIKKEVLAAGA---LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 161 (548)
Q Consensus 86 v~ll~~~~~~v~~~-a~~~L~~l~~~~~~~~~~~~~~g~---i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 161 (548)
.....+.+...++. +..+.......-. ...+.+. +|.++....+..+.++..+..+...+.+.-+....
T Consensus 180 ~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV--- 252 (569)
T KOG1242|consen 180 SKAIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV--- 252 (569)
T ss_pred HHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh---
Confidence 99888776555543 3222222211111 1122333 44445555566788888877776666433222211
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHH
Q 008940 162 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 241 (548)
Q Consensus 162 ~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 241 (548)
.-+++.++.-+.......+..++..++.++...+.+........+|.+.+.|.+.++++++.+..+|.+++.--++..
T Consensus 253 -K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d- 330 (569)
T KOG1242|consen 253 -KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD- 330 (569)
T ss_pred -hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-
Confidence 123444544444456778899999999999888888777788899999999999999999999999999986444432
Q ss_pred HHHhcCcccccccchhhh-hhhHHHHHHH-HHHHHhhhhhhhHHHHHHHHh----hhhhhhhhHHHHhhhccCCCcccee
Q 008940 242 FIRVGGVQKLQDGEFIVQ-ATKDCVAKTL-KRLEEKIHGRVLNHLLYLMRV----AEKGVQRRVALALAHLCSPDDQRTI 315 (548)
Q Consensus 242 ~~~~g~i~~L~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~L~~ll~~----~~~~~~~~a~~aL~~l~~~~~~~~~ 315 (548)
+. ..+|.|++...... ....|...-. ..+-..++...+..++.+++. .+...+..++.++.|++.--+..+.
T Consensus 331 I~--~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~ 408 (569)
T KOG1242|consen 331 IQ--KIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKD 408 (569)
T ss_pred HH--HHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHH
Confidence 11 12233333222211 2222221110 111112334455555555554 5778889999999999864322211
Q ss_pred e--ecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhccc
Q 008940 316 F--IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 353 (548)
Q Consensus 316 ~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 353 (548)
+ .-...+|-|-..+.+..|++|.-++.+|+.+.+....
T Consensus 409 lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 409 LAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred HhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence 1 1123455556666677899999999999998876543
No 82
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.33 E-value=0.00022 Score=69.33 Aligned_cols=289 Identities=14% Similarity=0.123 Sum_probs=192.2
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC--CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 87 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 87 (548)
.+++..+.+.+..+. .++..-..+.+.++--.++.-|..+ +..-|+.|++.++.+... +..... ...|++..++.
T Consensus 39 ~~vraa~yRilRy~i-~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~-~~~~~~-~~~~vvralva 115 (371)
T PF14664_consen 39 KEVRAAGYRILRYLI-SDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEI-KKGPKE-IPRGVVRALVA 115 (371)
T ss_pred HHHHHHHHHHHHHHH-cCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHh-cCCccc-CCHHHHHHHHH
Confidence 688999999999998 5677777788788777777777654 466888999999998863 222222 35578999999
Q ss_pred HhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChH
Q 008940 88 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 167 (548)
Q Consensus 88 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~ 167 (548)
+..++++..+..++.+|+.++-.+|+ .+...|++..+.+.+.++..++....+.++..+. +.|..|..+...--++
T Consensus 116 iae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~ 191 (371)
T PF14664_consen 116 IAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLE 191 (371)
T ss_pred HHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHH
Confidence 99999999999999999999988775 5778999999999998876668888888888886 4466666444433344
Q ss_pred HHHHhhCCC-------CH--HHHHHHHHHHHHhhcCCcchhhhHh--cCChHHHHHhhcCCChhHHHHHHHHHHhccc--
Q 008940 168 PLIEMLQSP-------DV--QLREMSAFALGRLAQDMHNQAGIAH--NGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-- 234 (548)
Q Consensus 168 ~L~~ll~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-- 234 (548)
.++.-+.+. +. +....+..++..+-++=++--.+.. ..++..|+..|..++++++......+..+-+
T Consensus 192 ~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 192 SLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 444443322 22 3445666677766655444322222 2478889999999999999999998888754
Q ss_pred CCcchHHHHHh------cCc---ccccccchh-----hhhhhHHHHHHHH-----HHHHhhhhhhhHHHHHHHHhh-hhh
Q 008940 235 NEDNVADFIRV------GGV---QKLQDGEFI-----VQATKDCVAKTLK-----RLEEKIHGRVLNHLLYLMRVA-EKG 294 (548)
Q Consensus 235 ~~~~~~~~~~~------g~i---~~L~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~~~~~L~~ll~~~-~~~ 294 (548)
.+.+...+... |-. ..+.. .|. ......-...-.+ -+....+.|.++.|+.+..+. ++.
T Consensus 272 ~p~w~~~~~~~~~~~~~~~~~~~~~l~~-~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~ 350 (371)
T PF14664_consen 272 PPSWTESFLAGRRLTTYGRFQDTWNLSS-GFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIESSEDSS 350 (371)
T ss_pred CCCcccchhhcccccccccccchhhhcc-cccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCch
Confidence 33333332211 111 00100 000 0000000001111 123447889999999999985 788
Q ss_pred hhhhHHHHhhhc
Q 008940 295 VQRRVALALAHL 306 (548)
Q Consensus 295 ~~~~a~~aL~~l 306 (548)
+...|...|+.+
T Consensus 351 l~~KAtlLL~el 362 (371)
T PF14664_consen 351 LSRKATLLLGEL 362 (371)
T ss_pred HHHHHHHHHHHH
Confidence 888887777654
No 83
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.28 E-value=6.7e-05 Score=72.83 Aligned_cols=192 Identities=15% Similarity=0.147 Sum_probs=145.9
Q ss_pred HHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC--Ch
Q 008940 17 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DS 94 (548)
Q Consensus 17 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~--~~ 94 (548)
+..|..+-+.+|..+..+.-....+.+..++-+++.++|..+.++++.+.. +++....+.+.++--.++..|..+ +.
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~ 82 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKND 82 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCCh
Confidence 455677777888777766655556666655555569999999999999997 688888888888766677777643 45
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC
Q 008940 95 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174 (548)
Q Consensus 95 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~ 174 (548)
.-|++|++.++.+.....+.+ -...|++..++.+..+.+...+..|..+|+.++..+|+ .+...|++..++..+.
T Consensus 83 ~ER~QALkliR~~l~~~~~~~--~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~ 157 (371)
T PF14664_consen 83 VEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALI 157 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHH
Confidence 668899999988875522211 12457788999999999999999999999999966554 5778999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhh
Q 008940 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 214 (548)
Q Consensus 175 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll 214 (548)
++..++.+..+.++..+...+..|..+...--+..++.-+
T Consensus 158 d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apf 197 (371)
T PF14664_consen 158 DGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPF 197 (371)
T ss_pred hccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhh
Confidence 8766788999999999998888777665544455544333
No 84
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00013 Score=74.15 Aligned_cols=293 Identities=15% Similarity=0.179 Sum_probs=144.5
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc---------------CChHHHHHHHHHHHHh
Q 008940 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS---------------EDSAIHYEAVGVIGNL 107 (548)
Q Consensus 43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~---------------~~~~v~~~a~~~L~~l 107 (548)
..++|.+.++-|...++..+..++..+++....+.+ .++.|+..|+. +++-++...+++|+-|
T Consensus 184 ~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL 261 (866)
T KOG1062|consen 184 FRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL 261 (866)
T ss_pred HHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh
Confidence 333444444444444444444444433333333333 44555555541 2466777888888877
Q ss_pred hcCChhHHHHHHhc-------------CChHHHH----Hhhh-cCChHHHHHHHHHHHHhhcCCchhHHHHHhc------
Q 008940 108 VHSSPNIKKEVLAA-------------GALQPVI----GLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQR------ 163 (548)
Q Consensus 108 ~~~~~~~~~~~~~~-------------g~i~~L~----~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------ 163 (548)
-.++++..+.|.+- -+=..|- .++. .++..++..|+.+|+.+....+.+.+-+.-.
T Consensus 262 Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V 341 (866)
T KOG1062|consen 262 GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVV 341 (866)
T ss_pred cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhh
Confidence 66655544433210 0000111 1111 1345566666666666654433332211100
Q ss_pred ----C----ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC
Q 008940 164 ----G----AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 235 (548)
Q Consensus 164 ----g----~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 235 (548)
. -=..++++|+++|..++..|+..+..|......+. .+..|+.+|.+.+++.+...+.-+..++..
T Consensus 342 ~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~------mv~eLl~fL~~~d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 342 QQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRV------MVKELLEFLESSDEDFKADIASKIAELAEK 415 (866)
T ss_pred cCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH------HHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 0 11357777888888888888888887765544332 245688888888888888877777777642
Q ss_pred --CcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhh-------hhhHHHHHH------HHhhhhhhhhhHH
Q 008940 236 --EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG-------RVLNHLLYL------MRVAEKGVQRRVA 300 (548)
Q Consensus 236 --~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~L~~l------l~~~~~~~~~~a~ 300 (548)
++.+..+-..--+-... +.|.- .+...++-.++.. ..+.+|... +.-+.+....-+.
T Consensus 416 faP~k~W~idtml~Vl~~a-G~~V~-------~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~ 487 (866)
T KOG1062|consen 416 FAPDKRWHIDTMLKVLKTA-GDFVN-------DDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVAS 487 (866)
T ss_pred cCCcchhHHHHHHHHHHhc-ccccc-------hhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 22222111000000000 00000 0011111111111 112222221 1224455577789
Q ss_pred HHhhhcc----CC--CccceeeecCCchHHHHHhhcC--CCCccchhhHHHHHHHhhhc
Q 008940 301 LALAHLC----SP--DDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 301 ~aL~~l~----~~--~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~ 351 (548)
|+|+... .+ .+.-...-+...+..|..++.+ .+..++..|..+|.+|...-
T Consensus 488 W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~ 546 (866)
T KOG1062|consen 488 WCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF 546 (866)
T ss_pred HHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc
Confidence 9998654 11 1222334556778888888864 44566888999999987653
No 85
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.00054 Score=71.66 Aligned_cols=278 Identities=19% Similarity=0.257 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHh----cCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 11 SVIRRAADAITNLAHENSSIKTRVRM----EGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~i~~----~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
+-..-++.+|.|+...+|+....+.. .|..+.+...+.+ .++.++..|+..+..+.. +.+....+...|.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence 34567899999999888866544332 2667777777764 678999999999999987 79999999999999899
Q ss_pred HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh-cCChHHHHHHHHHHHHhhcC------------
Q 008940 86 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAAT------------ 152 (548)
Q Consensus 86 v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~------------ 152 (548)
+.+|.+ -+..|+.++.+|..|++. +++.....+.|++..+..++. +..+..+..++..++.+..+
T Consensus 1819 L~lLHS-~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred HHHHhc-ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence 998875 577899999999999866 555566666777666665554 44466777777777766511
Q ss_pred -------------Cch----------------------------------------------------------------
Q 008940 153 -------------DSD---------------------------------------------------------------- 155 (548)
Q Consensus 153 -------------~~~---------------------------------------------------------------- 155 (548)
+|+
T Consensus 1897 kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~ 1976 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKEC 1976 (2235)
T ss_pred HhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCc
Confidence 000
Q ss_pred ------hHHHHHh------------cCChHHHHHhhCCCCH--HHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhh
Q 008940 156 ------CKVHIVQ------------RGAVRPLIEMLQSPDV--QLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLL 214 (548)
Q Consensus 156 ------~~~~~~~------------~g~v~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll 214 (548)
.|..+.+ .|.++.+.+++...++ +.......++..|....++ ...+-.-|.+|.++..+
T Consensus 1977 aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am 2056 (2235)
T KOG1789|consen 1977 AVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAM 2056 (2235)
T ss_pred ccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHH
Confidence 1111111 1223333344433222 1222222333333333322 34455568888888888
Q ss_pred cCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHH---------HHHHhhhhhhhHHHH
Q 008940 215 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK---------RLEEKIHGRVLNHLL 285 (548)
Q Consensus 215 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~L~ 285 (548)
...+..+-..++.+|-.|+.+.-+..++.....+..+++.............++++ -.....+.|.++.|+
T Consensus 2057 ~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL 2136 (2235)
T KOG1789|consen 2057 CLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLL 2136 (2235)
T ss_pred HhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHH
Confidence 77776677899999999999999999888766555544321111000001122222 223445667899999
Q ss_pred HHHHhh
Q 008940 286 YLMRVA 291 (548)
Q Consensus 286 ~ll~~~ 291 (548)
++|+..
T Consensus 2137 ~LLd~~ 2142 (2235)
T KOG1789|consen 2137 QLLDSS 2142 (2235)
T ss_pred HHhccc
Confidence 988763
No 86
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=1.9e-05 Score=76.29 Aligned_cols=290 Identities=14% Similarity=0.159 Sum_probs=192.9
Q ss_pred HHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCCh
Q 008940 15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 94 (548)
Q Consensus 15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~ 94 (548)
.++.+|..++++-.-.|.-+.+..+.+.|+++|+.++..+..-+...+.+..-.-..-+..+...|++..|+.++.+.|.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 44556667777666777778888899999999999888888888888888886555667788899999999999999999
Q ss_pred HHHHHHHHHHHHhhcCChhH-HHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchh---HHHHHhcC----Ch
Q 008940 95 AIHYEAVGVIGNLVHSSPNI-KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC---KVHIVQRG----AV 166 (548)
Q Consensus 95 ~v~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~g----~v 166 (548)
.+|....|.++++..++.+. +-.....-++..++.+..++...++..+...|.|+..+...+ ++...+.- ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 99999999999998766543 335556678999999999999999999999999998754432 22222211 34
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHh--cCChHHHHHhhcC---------C--ChhHHHHHHHHHHhcc
Q 008940 167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH--NGGLVPLLKLLDS---------K--NGSLQHNAAFALYGLA 233 (548)
Q Consensus 167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~L~~ll~~---------~--~~~v~~~a~~~L~~l~ 233 (548)
..|++.++..+|-..+..+..|.+++..++..+.++. ...+..+...|.. + ...+.........++.
T Consensus 568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~ 647 (743)
T COG5369 568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS 647 (743)
T ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence 4566777777776666778888888877776554432 2233333333321 1 1122222223333443
Q ss_pred cCCcchHHHHHhcCcccccccc---------h---------hhhhhhHHH---HHHHHHHHHhhhhhhhHHHHHHHHhhh
Q 008940 234 DNEDNVADFIRVGGVQKLQDGE---------F---------IVQATKDCV---AKTLKRLEEKIHGRVLNHLLYLMRVAE 292 (548)
Q Consensus 234 ~~~~~~~~~~~~g~i~~L~~~~---------~---------~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~ll~~~~ 292 (548)
.+.+.-.+..... |.+-... . .......|. ....++++.+.+.|+-+-+..+..+++
T Consensus 648 e~~d~f~r~~~~~--p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~S 725 (743)
T COG5369 648 ENSDKFKRLVLTT--PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDS 725 (743)
T ss_pred ccccccccceecC--CCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCc
Confidence 3222111111000 1110000 0 011111221 456788888888888888888878889
Q ss_pred hhhhhhHHHHhhhc
Q 008940 293 KGVQRRVALALAHL 306 (548)
Q Consensus 293 ~~~~~~a~~aL~~l 306 (548)
+.+|+.+-.+|.++
T Consensus 726 l~vrek~~taL~~l 739 (743)
T COG5369 726 LIVREKIGTALENL 739 (743)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998888876
No 87
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.16 E-value=1.5e-05 Score=62.60 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=101.9
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 87 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 87 (548)
.+.+.+++....|.+.++ +|.+...+.+.+.+...+..|..++..+.+.++..|.|+|- ++.+++.+.+.++++.++.
T Consensus 29 t~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~ 106 (173)
T KOG4646|consen 29 TNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIF 106 (173)
T ss_pred ccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEe
Confidence 345788899999999995 78888889999999999999999999999999999999997 7999999999999999999
Q ss_pred HhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHH
Q 008940 88 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 127 (548)
Q Consensus 88 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 127 (548)
.+.++...+...++.++..++..+..-++.+....++..+
T Consensus 107 ~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v 146 (173)
T KOG4646|consen 107 VLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTV 146 (173)
T ss_pred ecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHH
Confidence 9999999999999999999987766666665544333333
No 88
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.11 E-value=5.9e-05 Score=75.59 Aligned_cols=280 Identities=19% Similarity=0.170 Sum_probs=188.0
Q ss_pred HHHHHHHHhhhChhhHHHHHhcCCchHHHHhh----------ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 16 AADAITNLAHENSSIKTRVRMEGGIPPLVELL----------EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 16 a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
|+.+|.-++ .++.....+....++..|.++- ..+++.+...|+++|.|+...++..+..+.+.|+.+.+
T Consensus 1 ~L~~LRiLs-Rd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILS-RDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHc-cCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 355666777 4565666666666777777655 34568999999999999999899999999999999999
Q ss_pred HHHhccC-----ChHHHHHHHHHHHHhhcCChhHHHHHHhc-CChHHHHHhhhc---------C--------ChHHHHHH
Q 008940 86 ILMLRSE-----DSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS---------C--------CSESQREA 142 (548)
Q Consensus 86 v~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~---------~--------~~~~~~~a 142 (548)
+..|+.. +.++.-...++|.-++......+..+++. +++..+...+.. . +......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999865 78899999999988888777777666654 777777776642 0 22345666
Q ss_pred HHHHHHhhcCCchhHHHHHhcCChHHHHHhhC-------C--CCHHHHHHHHHHHHHhhcCCcc--------hh----hh
Q 008940 143 ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-------S--PDVQLREMSAFALGRLAQDMHN--------QA----GI 201 (548)
Q Consensus 143 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~-------~--~~~~v~~~a~~~L~~l~~~~~~--------~~----~~ 201 (548)
+..+-|+..+.+.... -...+.++.++.++. . +......++.-+|.|+-..... .. ..
T Consensus 160 LKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Confidence 7788888765544332 012233343333322 1 2235677888888887321110 00 01
Q ss_pred HhcCChHHHHHhhcC----CC----hhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHH
Q 008940 202 AHNGGLVPLLKLLDS----KN----GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 273 (548)
Q Consensus 202 ~~~~~l~~L~~ll~~----~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~ 273 (548)
.....+..|+.+|+. .. .+.....+.+|.+++..........+..++|.+.+-.....
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e-------------- 304 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPE-------------- 304 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCC--------------
Confidence 122235556666642 11 24556677888888888777788888888888755322221
Q ss_pred HhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccc
Q 008940 274 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR 313 (548)
Q Consensus 274 ~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~ 313 (548)
.....-.+|+.+|.+..+.++..++..|..+|..+..+
T Consensus 305 --~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~ 342 (446)
T PF10165_consen 305 --KGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDASR 342 (446)
T ss_pred --CCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHHH
Confidence 12236789999999988999999999999998655443
No 89
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=8e-05 Score=75.62 Aligned_cols=319 Identities=16% Similarity=0.164 Sum_probs=186.8
Q ss_pred chhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHH
Q 008940 5 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 84 (548)
Q Consensus 5 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 84 (548)
+...+|.++..|++.+..+-- +..-. ....+|.+.+++.++.+|..++..+.++-. ...+.....|.++.
T Consensus 95 ~~d~np~iR~lAlrtm~~l~v--~~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~ 164 (734)
T KOG1061|consen 95 CEDPNPLIRALALRTMGCLRV--DKITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDA 164 (734)
T ss_pred CCCCCHHHHHHHhhceeeEee--hHHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHH
Confidence 445566777776666655541 22222 245688899999999999999988888864 45566777899999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcC
Q 008940 85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG 164 (548)
Q Consensus 85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 164 (548)
|-.++.++++.+...|+.+|..+....++.-........+..++..+...+.--+ +.+|.+++...+...... ..
T Consensus 165 L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~~ea--~~ 239 (734)
T KOG1061|consen 165 LKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDSREA--ED 239 (734)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCchhH--HH
Confidence 9999999999999999999999976544310000011122233333322222222 334444543333222111 23
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHH
Q 008940 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 244 (548)
Q Consensus 165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 244 (548)
.++.+...+++.++.+...+...+.++...............-++++.++.... +++.-++.-+.-+-...+. +..
T Consensus 240 i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~---~~~ 315 (734)
T KOG1061|consen 240 ICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE---ILK 315 (734)
T ss_pred HHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH---HHH
Confidence 667788888888888888888888888755444222333344556777776665 6665555444333221111 100
Q ss_pred hcCcccc---cccchhhhhhhHHHH--HHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecC
Q 008940 245 VGGVQKL---QDGEFIVQATKDCVA--KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDG 319 (548)
Q Consensus 245 ~g~i~~L---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~ 319 (548)
...--.. .+....-....+|.. ..-.++++ ++..+...-..-|.+....+.+|+++++..-+.. .
T Consensus 316 ~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q-----vl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~ 385 (734)
T KOG1061|consen 316 VEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ-----VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----N 385 (734)
T ss_pred hHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH-----HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----h
Confidence 0000000 000000001111111 01111111 4444455555568888899999999998754433 5
Q ss_pred CchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940 320 GGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 320 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 352 (548)
+.+..|++++..+...+...+...+..+.++-.
T Consensus 386 ~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP 418 (734)
T KOG1061|consen 386 DCVSILLELLETKVDYVVQEAIVVIRDILRKYP 418 (734)
T ss_pred hhHHHHHHHHhhcccceeeehhHHHHhhhhcCC
Confidence 789999999998888888888888888887643
No 90
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0003 Score=71.63 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=32.8
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCCh
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 112 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~ 112 (548)
.|.+.+++++.++.+|.+|+.+...+....|+..+. ++...-++|.+.+..|...++..+..++..++
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 344555555555555555555555555443433322 23333444444444444444444444444433
No 91
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.07 E-value=2.8e-06 Score=74.38 Aligned_cols=97 Identities=23% Similarity=0.315 Sum_probs=69.5
Q ss_pred eEEEchHHHHhcccHHHHhhhcCCCCCCCC---------CceecCC-CCHHHH-HHHHHHHhcCccccc-----------
Q 008940 390 RRFYAHRICLLASSDAFRAMFDGGYREKDA---------RDIEIPN-IRWEVF-ELMMRFIYTGSVDVT----------- 447 (548)
Q Consensus 390 ~~~~~h~~il~~~s~~f~~~~~~~~~e~~~---------~~i~l~~-~~~~~~-~~~l~~~Yt~~~~~~----------- 447 (548)
..++||+.|.++||++||.++.....|+.+ ..|.+++ +=|..| -.+++++||+.++.+
T Consensus 261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigS 340 (401)
T KOG2838|consen 261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGS 340 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCccccc
Confidence 579999999999999999999755443322 2455543 334444 457899999987532
Q ss_pred -----------------hHhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHH
Q 008940 448 -----------------LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSM 486 (548)
Q Consensus 448 -----------------~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~ 486 (548)
...+.+|+++|-+|.+.-|.+.|+..+......++...+
T Consensus 341 LSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadlsn~c 396 (401)
T KOG2838|consen 341 LSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAADLSNGC 396 (401)
T ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 234678888888888888888888888776666655443
No 92
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.07 E-value=5.7e-06 Score=52.22 Aligned_cols=41 Identities=46% Similarity=0.583 Sum_probs=38.3
Q ss_pred ChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhc
Q 008940 27 NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 67 (548)
Q Consensus 27 ~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 67 (548)
+++++..+.+.|+++.|+++|++++++++..|+++|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47888999999999999999999999999999999999973
No 93
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.00031 Score=66.63 Aligned_cols=240 Identities=18% Similarity=0.198 Sum_probs=178.6
Q ss_pred HHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCC---------hhHHHHHHhcCChHH
Q 008940 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS---------PNIKKEVLAAGALQP 126 (548)
Q Consensus 56 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~---------~~~~~~~~~~g~i~~ 126 (548)
...++-+..++. -|+-...+++.++++.|+.+|.+.|.++...++..|..|+..+ ...-+.+++.++++.
T Consensus 102 hd~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 102 HDIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 455677777786 6888889999999999999999999999999999999997432 123466778899999
Q ss_pred HHHhhhcCChH------HHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCc-c
Q 008940 127 VIGLLSSCCSE------SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMH-N 197 (548)
Q Consensus 127 L~~ll~~~~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~-~ 197 (548)
|++-+..-+.. -...+...+-|+....+.....+++.|.+.+|+..+... -..-...|...|.-+..+.. +
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 99988764433 446667788999988899999999999999999976543 33456777777877776665 5
Q ss_pred hhhhHhcCChHHHHHhhc----CC-----ChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHH
Q 008940 198 QAGIAHNGGLVPLLKLLD----SK-----NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT 268 (548)
Q Consensus 198 ~~~~~~~~~l~~L~~ll~----~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~ 268 (548)
+..+..-.|+..+++-+. ++ ..+..++.-.+|+.+...+.++..+....++.
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlq------------------- 321 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQ------------------- 321 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHH-------------------
Confidence 666666788888777663 11 23556677778888888899998887665433
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc---cceeeecCCchHHHHHhhc
Q 008940 269 LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD---QRTIFIDGGGLELLLGLLG 330 (548)
Q Consensus 269 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~---~~~~~~~~~~i~~L~~ll~ 330 (548)
+..++-......+..+..+|-....+++ ++..+++..|+..++.+..
T Consensus 322 ---------------Lm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 322 ---------------LMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred ---------------HHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 2233433355567778888888877655 5567888888888777654
No 94
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.05 E-value=6.2e-06 Score=52.04 Aligned_cols=41 Identities=39% Similarity=0.621 Sum_probs=38.4
Q ss_pred CcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhc
Q 008940 69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 109 (548)
Q Consensus 69 ~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~ 109 (548)
+++++..+.+.|+++.|+++|++++.++++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47889999999999999999999999999999999999973
No 95
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.04 E-value=0.0018 Score=65.06 Aligned_cols=287 Identities=20% Similarity=0.183 Sum_probs=171.9
Q ss_pred HHHHHHHhhccCcchhhHhhhcCChHHHHHHh----------ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHH
Q 008940 58 AAGALRTLAFKNDENKNQIVECNALPTLILML----------RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 127 (548)
Q Consensus 58 a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 127 (548)
|+.+|+.+++ ++.+...+....++..|+++- ..+++.+...|+++|+|+...++..|+.+.+.|+.+.+
T Consensus 1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 3567777787 677888887777788887766 24578999999999999999999999999999999999
Q ss_pred HHhhhcC-----ChHHHHHHHHHHHHhhcCCchhHHHHHh-cCChHHHHHhhCC-----------------CCHHHHHHH
Q 008940 128 IGLLSSC-----CSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQS-----------------PDVQLREMS 184 (548)
Q Consensus 128 ~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~L~~ll~~-----------------~~~~v~~~a 184 (548)
+..++.. +.++.-...+.|--++...+..+..+++ .+++..+...+.. .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999876 6777777777777676666777766655 4677777776521 133456778
Q ss_pred HHHHHHhhcCCcchhhhHhcCChHHHHHhhcC---------CChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccc
Q 008940 185 AFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS---------KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGE 255 (548)
Q Consensus 185 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~ 255 (548)
++.+.|+....+....-...+.++.++.++.+ +......+++.+|.|+--. ....+.....-.. ..
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~--~~~~l~~~~~~~~---~~ 234 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE--CLDSLLSPKFQQS---SL 234 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH--HHhhhhcccCCcc---cc
Confidence 89999998665543321223344444444321 1245667778888887211 1111110000000 00
Q ss_pred hhhhhhhHHHHHHHHHHHHhh-------hhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc-cceeeec--CCchHHH
Q 008940 256 FIVQATKDCVAKTLKRLEEKI-------HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFID--GGGLELL 325 (548)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~--~~~i~~L 325 (548)
+.......+....++-+.... -...+.+++.+|..-.... ..+-..+....-.+. .++...+ ...-..|
T Consensus 235 ~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rL 313 (446)
T PF10165_consen 235 FPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-REVRKYLRARLLPPDKDRKKPPEKGDTLRSRL 313 (446)
T ss_pred cCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-HHHHHHHHHHhCCChhhcccCCCCCcchHHHH
Confidence 000011111111111111111 1235666666666521111 222223333333222 2222222 2345889
Q ss_pred HHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 326 LGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 326 ~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
++++.+..+.++..++..|..|++..
T Consensus 314 lrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 314 LRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 99999988999999999999998765
No 96
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.00058 Score=68.74 Aligned_cols=209 Identities=22% Similarity=0.250 Sum_probs=142.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
++.|=++.+|.-.++.+.-.-|+.- . ..+|.|++-|.++|+.|+..|+.++..|++.+|.+.-. ..|.+.
T Consensus 155 sskpYvRKkAIl~lykvFLkYPeAl---r--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-----LAP~ff 224 (877)
T KOG1059|consen 155 SSKPYVRKKAILLLYKVFLKYPEAL---R--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-----LAPLFY 224 (877)
T ss_pred cCchHHHHHHHHHHHHHHHhhhHhH---h--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-----ccHHHH
Confidence 3445667777777777774433322 2 46778888888888888888888888888877776544 466777
Q ss_pred HHhcc-CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHH--HhhcCCchhHHHHHh
Q 008940 87 LMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLG--QFAATDSDCKVHIVQ 162 (548)
Q Consensus 87 ~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~--~l~~~~~~~~~~~~~ 162 (548)
++|.+ .|.=+....+.++++|+--.|.... ..++++..++.+.. ..+...++.++. ++.++.+++...+.
T Consensus 225 kllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq- 298 (877)
T KOG1059|consen 225 KLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ- 298 (877)
T ss_pred HHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH-
Confidence 77763 3333455567777888766555432 36778888887654 445555555432 33333333222221
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940 163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 236 (548)
Q Consensus 163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 236 (548)
-+++.|--++.++|+.++..++-+++.+....+.. +. .--+.+++.|.+.++.++..|+..|..+...+
T Consensus 299 -LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~---Vq-a~kdlIlrcL~DkD~SIRlrALdLl~gmVskk 367 (877)
T KOG1059|consen 299 -LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA---VQ-AHKDLILRCLDDKDESIRLRALDLLYGMVSKK 367 (877)
T ss_pred -HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH---HH-HhHHHHHHHhccCCchhHHHHHHHHHHHhhhh
Confidence 26788888889999999999999999998654321 11 23456889999999999999999999887654
No 97
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.98 E-value=1.3e-05 Score=61.65 Aligned_cols=87 Identities=25% Similarity=0.369 Sum_probs=66.8
Q ss_pred EEEEeCCeEEEchHHHHh-cccHHHHhhhcCC---CCCCCCCceecCCCCHHHHHHHHHHHhc-Cccccc-hHhHHHHHH
Q 008940 383 VTFLVEGRRFYAHRICLL-ASSDAFRAMFDGG---YREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVT-LDIAQDLLR 456 (548)
Q Consensus 383 v~~~~~~~~~~~h~~il~-~~s~~f~~~~~~~---~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-~~~~~~-~~~~~~ll~ 456 (548)
|.+.|||+.|..-+..|. ....+|..|+.++ ........+-++ =+|+.|+.+|+|+.+ |.+..+ ......+++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD-Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID-RDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES-S-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec-cChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 578899999999999998 5567999999864 334455677774 599999999999999 677764 567889999
Q ss_pred HHHHhChHhH-HHHH
Q 008940 457 AADQYLLEGL-KRLC 470 (548)
Q Consensus 457 ~a~~~~~~~l-~~~c 470 (548)
-|++|+++.+ .+.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 6655
No 98
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.00034 Score=68.43 Aligned_cols=256 Identities=12% Similarity=0.043 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHhhccCcchhhHhhhcC-ChHHH-HHHhc-cCChHHHHHHHHHHHHhhcCChhHHHHHHhcC----Ch
Q 008940 52 TKVQRAAAGALRTLAFKNDENKNQIVECN-ALPTL-ILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG----AL 124 (548)
Q Consensus 52 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~L-v~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g----~i 124 (548)
..++..++.++++.+.. ..-...+...+ ++-.+ ...++ .++..+|..++.+|.+-. ...+..+..++ ++
T Consensus 148 ~~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl---~fv~~nf~~E~erNy~m 223 (858)
T COG5215 148 VSGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL---MFVQGNFCYEEERNYFM 223 (858)
T ss_pred hHhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH---HHHHHhhcchhhhchhh
Confidence 66889999999999973 33323333333 22222 23333 457788999999987732 22333333332 44
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch-hh---
Q 008940 125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AG--- 200 (548)
Q Consensus 125 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~--- 200 (548)
+..++.-+.++.+++..+-.+|..+..-.-.......+.-........+++.+.++...+...-..+|...-.- -.
T Consensus 224 qvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~ 303 (858)
T COG5215 224 QVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKY 303 (858)
T ss_pred eeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhh
Confidence 45556667788999999999998887554444444555555566667788888899888887766777432111 00
Q ss_pred ----------hH---hcCChHHHHHhhcCC-------ChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhh
Q 008940 201 ----------IA---HNGGLVPLLKLLDSK-------NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA 260 (548)
Q Consensus 201 ----------~~---~~~~l~~L~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~ 260 (548)
+. -...+|.|+++|... +..+...|..+|.-++...
T Consensus 304 ~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~------------------------ 359 (858)
T COG5215 304 LPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK------------------------ 359 (858)
T ss_pred cccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh------------------------
Confidence 00 112455666666432 1334444444444443322
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHH----HhhhhhhhhhHHHHhhhccCCCc--cceeeecCCchHHHHHhhcCCCC
Q 008940 261 TKDCVAKTLKRLEEKIHGRVLNHLLYLM----RVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNP 334 (548)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~L~~ll----~~~~~~~~~~a~~aL~~l~~~~~--~~~~~~~~~~i~~L~~ll~~~~~ 334 (548)
...++.+.+.+. ++++..-|..|..+++.+..++. .+..++ ..++|.+..+..++.-
T Consensus 360 ----------------gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l 422 (858)
T COG5215 360 ----------------GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCL 422 (858)
T ss_pred ----------------hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhccccee
Confidence 222344444444 44677888999999999988765 344443 5789999999988888
Q ss_pred ccchhhHHHHHHHhhhcc
Q 008940 335 KQQLDGAVALFKLANKAT 352 (548)
Q Consensus 335 ~v~~~a~~~L~~l~~~~~ 352 (548)
.++..++|+++.++++..
T Consensus 423 ~vk~ttAwc~g~iad~va 440 (858)
T COG5215 423 WVKSTTAWCFGAIADHVA 440 (858)
T ss_pred ehhhHHHHHHHHHHHHHH
Confidence 889999999999998753
No 99
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.97 E-value=0.00012 Score=73.58 Aligned_cols=266 Identities=18% Similarity=0.169 Sum_probs=167.2
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhH---HHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIK---TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 83 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~---~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 83 (548)
+.+++++.+|+..++.++.- -..+ +.+...|.+ |-+.|....+++.-..+.++..+...-.-.+..---.++++
T Consensus 810 nksa~vRqqaadlis~la~V-lktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllP 886 (1172)
T KOG0213|consen 810 NKSAKVRQQAADLISSLAKV-LKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLP 886 (1172)
T ss_pred CCChhHHHHHHHHHHHHHHH-HHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcc
Confidence 55789999999999999831 1111 123333433 66788888899887777777777642111111111246899
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhhcCChhH---HHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940 84 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNI---KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 160 (548)
Q Consensus 84 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 160 (548)
.|..+|++....+++.++..++.++...++. |+.+. +---|+.+|...+.++++.|..+++.++.- +
T Consensus 887 rltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iaka-------I 956 (1172)
T KOG0213|consen 887 RLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKA-------I 956 (1172)
T ss_pred cchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHh-------c
Confidence 9999999999999999999999999877652 44433 223577888888899999999999998732 2
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchH
Q 008940 161 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA 240 (548)
Q Consensus 161 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 240 (548)
.-..++..|+.-|+..+.+.|....-++.-++..... + ..+|.|++=-..++..||...+.+++.+-..-....
T Consensus 957 GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p---F---tVLPalmneYrtPe~nVQnGVLkalsf~Feyigems 1030 (1172)
T KOG0213|consen 957 GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP---F---TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMS 1030 (1172)
T ss_pred CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc---h---hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHh
Confidence 2223555666666655544444444444433322211 1 234555555556778888888777776643211100
Q ss_pred HHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCC
Q 008940 241 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGG 320 (548)
Q Consensus 241 ~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~ 320 (548)
. -.=..+.|.|-..|.+.|+.-|..|+.++.+++.+..+. |
T Consensus 1031 k---------------------------------dYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~------g 1071 (1172)
T KOG0213|consen 1031 K---------------------------------DYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGT------G 1071 (1172)
T ss_pred h---------------------------------hHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCc------C
Confidence 0 000124455556667788888999999999998874432 4
Q ss_pred chHHHHHhhc
Q 008940 321 GLELLLGLLG 330 (548)
Q Consensus 321 ~i~~L~~ll~ 330 (548)
....++.||+
T Consensus 1072 ~eda~iHLLN 1081 (1172)
T KOG0213|consen 1072 CEDALIHLLN 1081 (1172)
T ss_pred cHHHHHHHHH
Confidence 4555555554
No 100
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.96 E-value=0.00016 Score=65.60 Aligned_cols=251 Identities=12% Similarity=0.119 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHhcCC---hHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH-HHHhcCChHHHH
Q 008940 95 AIHYEAVGVIGNLVHSSPNIKKEVLAAGA---LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLI 170 (548)
Q Consensus 95 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~---i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~v~~L~ 170 (548)
..+..-..++.....+++-. ++.|. ...|-++++.-++-.+.-|+.++.++... ++.|. ...+..+-..++
T Consensus 123 ~~k~~f~~vf~~~~~~~~~~----v~~~~~LfleyLgkl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~ 197 (432)
T COG5231 123 KHKKEFLSVFKQMLKDNTSY----VESNYLLFLEYLGKLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFM 197 (432)
T ss_pred HHHHHHHHHHHHHccCchHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHH
Confidence 34445555555554443322 11221 22333444444555788889999999755 45554 445566777888
Q ss_pred HhhCC--CCHHHHHHHHHHHHHhhcCCcchhhhHh-cCChHHHHHhhcCC-ChhHHHHHHHHHHhcccC--CcchHHHHH
Q 008940 171 EMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAH-NGGLVPLLKLLDSK-NGSLQHNAAFALYGLADN--EDNVADFIR 244 (548)
Q Consensus 171 ~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~--~~~~~~~~~ 244 (548)
+.++. ++.+++.+.+.++|.++.++.....+-. ...+..++.+.+.. ...+.+-+++++.|++.. .+....+..
T Consensus 198 e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll 277 (432)
T COG5231 198 EILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL 277 (432)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh
Confidence 88887 4678999999999999987765422211 12344566666543 467888899999999873 233333333
Q ss_pred hcCcc----cccccchh-----hh-----------hhhHHHHH----------------------HHHHHHHhhh--hhh
Q 008940 245 VGGVQ----KLQDGEFI-----VQ-----------ATKDCVAK----------------------TLKRLEEKIH--GRV 280 (548)
Q Consensus 245 ~g~i~----~L~~~~~~-----~~-----------~~~~~~~~----------------------~~~~~~~~~~--~~~ 280 (548)
.|-+. .|.+...+ .+ +..-|.-. -..++....+ ..+
T Consensus 278 l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i 357 (432)
T COG5231 278 LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEI 357 (432)
T ss_pred hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHH
Confidence 33111 11110000 00 00001000 0012222222 237
Q ss_pred hHHHHHHHHhhhhh-hhhhHHHHhhhccC-CCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 281 LNHLLYLMRVAEKG-VQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 281 ~~~L~~ll~~~~~~-~~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
+..|..+++..++. .-.-||.-++++.+ .|+.+..+.+.|+-..+.+|++|++++|+..|..++..+...
T Consensus 358 ~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 358 VKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 88999999987666 44557777777775 578888889999999999999999999999999998877654
No 101
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.00013 Score=70.82 Aligned_cols=188 Identities=13% Similarity=0.113 Sum_probs=147.0
Q ss_pred HHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC
Q 008940 56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC 135 (548)
Q Consensus 56 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 135 (548)
..++..|..+++.-..-|..+.+..+.+.|+++|.+|+..+.-.+...++|+....+..+..+.+.|+|..++.++.+.+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 44566777777755566777888899999999999988888888889999998888888999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCchhHH-HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc----hhhhHhcC----C
Q 008940 136 SESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN----QAGIAHNG----G 206 (548)
Q Consensus 136 ~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~~----~ 206 (548)
...+.+..|.+..+..++.+... .....-++..++++..++...+++.+...|.|+..+... +..+.... .
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 99999999999999877655433 456667889999999999999999999999999864332 22222211 1
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHH
Q 008940 207 LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI 243 (548)
Q Consensus 207 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 243 (548)
...++..+...+|-.....+..|.+++..+++...++
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V 603 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIV 603 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHH
Confidence 2335555666777666777999999987776666554
No 102
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.96 E-value=0.0014 Score=68.17 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=100.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhh------------------cCCChhHHHHHH
Q 008940 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL------------------DSKNGSLQHNAA 226 (548)
Q Consensus 165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll------------------~~~~~~v~~~a~ 226 (548)
.-..+++.+.+++++++..|..||++++.+.-.. .+|-++..+ ...........+
T Consensus 858 ~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~-------yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v 930 (1233)
T KOG1824|consen 858 LKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPK-------YLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYV 930 (1233)
T ss_pred hHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHh-------HHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhH
Confidence 3445677778889999999999999998754221 222222222 222222222222
Q ss_pred HHHHhc-ccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhh
Q 008940 227 FALYGL-ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 305 (548)
Q Consensus 227 ~~L~~l-~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~ 305 (548)
.-+|.+ ..+.++.+. .....+++++..+...-....+++|-..+.++.+..|..+..++..
T Consensus 931 ~~IW~lL~k~cE~~ee------------------gtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKf 992 (1233)
T KOG1824|consen 931 EKIWALLFKHCECAEE------------------GTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKF 992 (1233)
T ss_pred HHHHHHHHHhcccchh------------------hhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeee
Confidence 222222 222222111 1123345555555555556688999889999999999888888876
Q ss_pred ccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 306 LCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 306 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
........-......-+..++.++++++.+||+.|..++...+++.
T Consensus 993 sisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen 993 SISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred eecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccC
Confidence 6655443333333456788899999999999999999998888754
No 103
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.95 E-value=0.0012 Score=65.07 Aligned_cols=210 Identities=13% Similarity=0.007 Sum_probs=135.8
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 119 (548)
+..|++.|.++++.++..++.+|+.+-. .+..+.|+.+|.++++.++..++.+++..-
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~----------- 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGAHR----------- 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------
Confidence 6788999999999999999999987664 346788999999999999998887776631
Q ss_pred hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchh
Q 008940 120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 199 (548)
Q Consensus 120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 199 (548)
....+.+..++++.++.++..|+.+|+.+-.. ..++.|...+.+.++.|+..|++++..+...
T Consensus 146 -~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~----- 208 (410)
T TIGR02270 146 -HDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLAGSR----- 208 (410)
T ss_pred -cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCH-----
Confidence 22456888899999999999999999998532 3567788889999999999999999777431
Q ss_pred hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhh
Q 008940 200 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 279 (548)
Q Consensus 200 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (548)
.++..+..+...........+..++... ..+.....+.+. ... ..........+..+.+..
T Consensus 209 -----~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~~~a~~~L~~l------l~d-------~~vr~~a~~AlG~lg~p~ 269 (410)
T TIGR02270 209 -----LAWGVCRRFQVLEGGPHRQRLLVLLAVA-GGPDAQAWLREL------LQA-------AATRREALRAVGLVGDVE 269 (410)
T ss_pred -----hHHHHHHHHHhccCccHHHHHHHHHHhC-CchhHHHHHHHH------hcC-------hhhHHHHHHHHHHcCCcc
Confidence 1223333323222222222222222221 111111111110 000 001112223333445556
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHhhhccCC
Q 008940 280 VLNHLLYLMRVAEKGVQRRVALALAHLCSP 309 (548)
Q Consensus 280 ~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~ 309 (548)
.++.|+..+.... ++..|..++..+..-
T Consensus 270 av~~L~~~l~d~~--~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 270 AAPWCLEAMREPP--WARLAGEAFSLITGM 297 (410)
T ss_pred hHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence 7888888776544 888899999888753
No 104
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.94 E-value=0.00089 Score=65.30 Aligned_cols=156 Identities=32% Similarity=0.420 Sum_probs=119.9
Q ss_pred CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 117 (548)
Q Consensus 38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 117 (548)
..++.+.+.+.+.+..++..+...++.+.. .-.++.+..++.+.++.+|..++.+|+.+- .+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~----- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DP----- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch-----
Confidence 367788899999899999999999776664 236889999999999999999999888883 12
Q ss_pred HHhcCChHHHHHhhh-cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCC----------H--HHHHHH
Q 008940 118 VLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD----------V--QLREMS 184 (548)
Q Consensus 118 ~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~----------~--~v~~~a 184 (548)
..++.++.++. +.+..++..++++|..+-.. ..+..++..+.++. + .++..+
T Consensus 105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 25788899888 58888999999999998421 13566777776644 2 467777
Q ss_pred HHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940 185 AFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 236 (548)
Q Consensus 185 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 236 (548)
..+|+.+... ..++.+..++.+.+..++..+..+|..+..+.
T Consensus 170 ~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 170 AEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 7777776422 35677888888888889999999998887654
No 105
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.00064 Score=66.64 Aligned_cols=303 Identities=13% Similarity=0.049 Sum_probs=187.3
Q ss_pred hhhhh-HHHHHHHHHHHHHhhhChhhHHHHHhcCCc-hHHHH-hhc-cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCC
Q 008940 6 SRAVN-SVIRRAADAITNLAHENSSIKTRVRMEGGI-PPLVE-LLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNA 81 (548)
Q Consensus 6 ~~~~~-~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i-~~L~~-ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 81 (548)
+...| .....++..+.+.|... .....+...+.+ -.++. -++ .++..+|..|+.+|.+-+. ..+..+..++-
T Consensus 143 g~eqp~~~k~~sl~~~gy~ces~-~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~~E~e 218 (858)
T COG5215 143 GDEQPVSGKCESLGICGYHCESE-APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFCYEEE 218 (858)
T ss_pred cccCchHhHHHHHHHHHHHhhcc-CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhcchhh
Confidence 33444 55667888899999532 224444444443 34443 223 3568899999999987442 12222332322
Q ss_pred ----hHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhH
Q 008940 82 ----LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 157 (548)
Q Consensus 82 ----i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 157 (548)
++...+.-+.++.+++..+..+|..+..-....-...++........+.+++.+.++...++.....+|....+..
T Consensus 219 rNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~ 298 (858)
T COG5215 219 RNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGE 298 (858)
T ss_pred hchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhH
Confidence 3334455567899999999999999987666655566666666677788899999999999988888874321111
Q ss_pred HHH----------------HhcCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhh
Q 008940 158 VHI----------------VQRGAVRPLIEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 214 (548)
Q Consensus 158 ~~~----------------~~~g~v~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll 214 (548)
-.. .-..++|.|+.+|.. ++..+...|..||.-.+....++ +.+ ..+.-+-+-+
T Consensus 299 ~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~--i~~-pVl~FvEqni 375 (858)
T COG5215 299 MEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK--IMR-PVLGFVEQNI 375 (858)
T ss_pred HHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH--hHH-HHHHHHHHhc
Confidence 111 112478889999865 23456777777777666543322 222 1222233456
Q ss_pred cCCChhHHHHHHHHHHhcccCCcc--hHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhh
Q 008940 215 DSKNGSLQHNAAFALYGLADNEDN--VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE 292 (548)
Q Consensus 215 ~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 292 (548)
++++..-++.++.+++.+...+.. ...+ =...+|-+...+.++.
T Consensus 376 ~~~~w~nreaavmAfGSvm~gp~~~~lT~~----------------------------------V~qalp~i~n~m~D~~ 421 (858)
T COG5215 376 RSESWANREAAVMAFGSVMHGPCEDCLTKI----------------------------------VPQALPGIENEMSDSC 421 (858)
T ss_pred cCchhhhHHHHHHHhhhhhcCccHHHHHhh----------------------------------HHhhhHHHHHhcccce
Confidence 677888888899999988765432 1111 1224666667777777
Q ss_pred hhhhhhHHHHhhhccCCCc---cceeeecCCchHH-HHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940 293 KGVQRRVALALAHLCSPDD---QRTIFIDGGGLEL-LLGLLGSTNPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 293 ~~~~~~a~~aL~~l~~~~~---~~~~~~~~~~i~~-L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 352 (548)
-.++..++|+++.++..-. +... .-.+.+.. ++.+ .++|.+..+++|...|++.+..
T Consensus 422 l~vk~ttAwc~g~iad~va~~i~p~~-Hl~~~vsa~liGl--~D~p~~~~ncsw~~~nlv~h~a 482 (858)
T COG5215 422 LWVKSTTAWCFGAIADHVAMIISPCG-HLVLEVSASLIGL--MDCPFRSINCSWRKENLVDHIA 482 (858)
T ss_pred eehhhHHHHHHHHHHHHHHHhcCccc-cccHHHHHHHhhh--hccchHHhhhHHHHHhHHHhhh
Confidence 7888999999999976411 1100 00111222 2222 3467888899999999998754
No 106
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.91 E-value=4.2e-05 Score=58.07 Aligned_cols=86 Identities=34% Similarity=0.448 Sum_probs=69.7
Q ss_pred chHHHHhh-ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940 40 IPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 118 (548)
Q Consensus 40 i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 118 (548)
|+.|++.| +++++.+|..++.+|+.+.. + ..++.|+.+++++++.+|..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889988 88899999999999996643 2 35899999999999999999999999883
Q ss_pred HhcCChHHHHHhhhcCC-hHHHHHHHHHHH
Q 008940 119 LAAGALQPVIGLLSSCC-SESQREAALLLG 147 (548)
Q Consensus 119 ~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~ 147 (548)
....++.|.+++.+++ ..++..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 1237899999998765 456788888774
No 107
>PF05536 Neurochondrin: Neurochondrin
Probab=97.90 E-value=0.00078 Score=69.16 Aligned_cols=194 Identities=18% Similarity=0.188 Sum_probs=142.2
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcch---hhHhhhcCChHHHHHHhcc-------CChHHHHHHHHHHHHhhc
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN---KNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNLVH 109 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~Lv~ll~~-------~~~~v~~~a~~~L~~l~~ 109 (548)
+...+.+|+..+.+-|..++..+.+++.+++.. ++.+.+.=+.+-+-++|++ +....+..|+.+|..++.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 456788899888888999999999999865533 3346666567788888886 345678889999999987
Q ss_pred CChhHHHHHHhcCChHHHHHhhhcCCh-HHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHH
Q 008940 110 SSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188 (548)
Q Consensus 110 ~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L 188 (548)
+ ++....---.+-||.|+.++.+.+. ++...+..+|..++ ..++.+..+.+.|.++.|.+.+.+ .+...+.++.++
T Consensus 87 ~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 87 D-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred C-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 5 5543322223579999999988777 99999999999999 558889999999999999999988 557789999999
Q ss_pred HHhhcCCcchhhhHh----cCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940 189 GRLAQDMHNQAGIAH----NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 236 (548)
Q Consensus 189 ~~l~~~~~~~~~~~~----~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 236 (548)
.+++........-.. ...++.+...+.......+-..+..|..+-...
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 998865442111011 122344555555555556667788888876544
No 108
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0002 Score=69.98 Aligned_cols=328 Identities=17% Similarity=0.135 Sum_probs=187.5
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHH
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILM 88 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~l 88 (548)
..++-.||..++++++-...... ..-..+...+.++..+++..++. ++..+-.+... ..+....+.=.+.++.|-.-
T Consensus 98 ~~vRyyACEsLYNiaKv~k~~v~-~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tFsL~~~ipLL~er 175 (675)
T KOG0212|consen 98 SQVRYYACESLYNIAKVAKGEVL-VYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTFSLPEFIPLLRER 175 (675)
T ss_pred ceeeeHhHHHHHHHHHHhccCcc-cchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccccCHHHHHHHHHHH
Confidence 35677999999999852111111 11123344556666666666663 33333333321 01111122222344444444
Q ss_pred hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcC---CchhHHHHHhcCC
Q 008940 89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT---DSDCKVHIVQRGA 165 (548)
Q Consensus 89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~g~ 165 (548)
+...++..|...+.-|..|-.. |+..-.-.-...++.|..+|.+++.+++..+-.++.++... +|.. +--...
T Consensus 176 iy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~ 251 (675)
T KOG0212|consen 176 IYVINPMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDM 251 (675)
T ss_pred HhcCCchHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccc
Confidence 4456888998888888777433 55433333346788889999999999998777766665421 1221 122457
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChh-HHHHHHH---HHHhcccCCcchHH
Q 008940 166 VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGS-LQHNAAF---ALYGLADNEDNVAD 241 (548)
Q Consensus 166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-v~~~a~~---~L~~l~~~~~~~~~ 241 (548)
++.++..+.++++.++..|+..+..+..-.+...-..-.|.+..++..+.+..+. ++..+.. .+..+...+...+.
T Consensus 252 i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~ 331 (675)
T KOG0212|consen 252 INVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE 331 (675)
T ss_pred hhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc
Confidence 8889999999999999999999999887776655555667777788888776553 4333322 33444433322222
Q ss_pred HHHhc-Ccccccccch-hhhhhhHHHHHHHHHH-------HHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCcc
Q 008940 242 FIRVG-GVQKLQDGEF-IVQATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ 312 (548)
Q Consensus 242 ~~~~g-~i~~L~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~ 312 (548)
++.| +++.|..-.+ +......|+.+-...+ -.+....+.+.|+.-|.+.+.++...++..+.++|.+++.
T Consensus 332 -id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 332 -IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred -cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 1111 1111111000 0001111111111111 1123345788888888889999999999999999988776
Q ss_pred ceeeecCCchHHHHHhhc---CCCCccchhhHHHHHHHhhh
Q 008940 313 RTIFIDGGGLELLLGLLG---STNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 313 ~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~ 350 (548)
. +..+.+..+|. ....-....+.-.+..|+.-
T Consensus 411 ~------~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 411 P------NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred c------cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 5 33555555554 43333466777777777653
No 109
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.88 E-value=0.00022 Score=75.64 Aligned_cols=286 Identities=15% Similarity=0.081 Sum_probs=178.7
Q ss_pred hhHHHHHHHHHHHHHhh-hChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhcc----CcchhhHhhhcCChH
Q 008940 9 VNSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK----NDENKNQIVECNALP 83 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~g~i~ 83 (548)
.++.+..|+..|..++. -+++.+ -..++|.++.++.++...||..|+.+|..+... .+.+...+.+. ++|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP 510 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFP 510 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhh
Confidence 35678889999999985 233322 236899999999999999999999999887642 22233333333 666
Q ss_pred HHHHHhcc-CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008940 84 TLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ 162 (548)
Q Consensus 84 ~Lv~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 162 (548)
.|-.++.+ ....+|..-+..|..||.... .+.+.+--.....++.+.+.+ ...+. .. ......+.
T Consensus 511 ~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nse-------t~~~~-~~-~~~~~~L~- 576 (1431)
T KOG1240|consen 511 HLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSE-------TAPEQ-NY-NTELQALH- 576 (1431)
T ss_pred hhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccc-------ccccc-cc-chHHHHHH-
Confidence 66777776 455677777778888764311 111111111111223333332 00011 01 11122222
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHH
Q 008940 163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 242 (548)
Q Consensus 163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 242 (548)
.++-+.+..++.++++-|+..-+..|.-||......+ ...-.+..|+.+|++.++.++..-...|..++..-..+
T Consensus 577 ~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--- 651 (1431)
T KOG1240|consen 577 HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--- 651 (1431)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---
Confidence 2445667777888888899888888888885432211 11124666889999998888766555666555432211
Q ss_pred HHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCch
Q 008940 243 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL 322 (548)
Q Consensus 243 ~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i 322 (548)
-.+...+|-|.+-|.++++.|...|+.+|.-|+...-.++..+ ...+
T Consensus 652 --------------------------------s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~ 698 (1431)
T KOG1240|consen 652 --------------------------------SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV-KDIL 698 (1431)
T ss_pred --------------------------------eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-HHHH
Confidence 0223366777777788899999999999999987665443222 2356
Q ss_pred HHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 323 ELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 323 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
+....+|.++|.-+|..++..+...++.-
T Consensus 699 ~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 699 QDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 66677888999999999998888887753
No 110
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.011 Score=59.83 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=73.0
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC--hHHHHHHHHHHHHhhcCCchhHHH
Q 008940 82 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATDSDCKVH 159 (548)
Q Consensus 82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~ 159 (548)
+..+.+=|.+.|+.....|+.+++|+-+ .+.++.+. +.+-++|.+++ .-+++.++.+|..|-..+|+.
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl--- 182 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL--- 182 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---
Confidence 3344444556788889999999999832 44444433 23336666554 458888999999988765553
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 008940 160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 196 (548)
Q Consensus 160 ~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 196 (548)
+-..+..+.++.+|.+.+..+...+...+..++...+
T Consensus 183 ~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 183 VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence 2234678899999999888888888888888886544
No 111
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.86 E-value=3.5e-05 Score=60.55 Aligned_cols=50 Identities=24% Similarity=0.410 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHHHHHH
Q 008940 483 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHN 532 (548)
Q Consensus 483 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~~~~ 532 (548)
|+.++.+|..|+...|.+.|.+||.+||.++.++++|.+||.+.+..+.+
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~ 50 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILS 50 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHh
Confidence 78999999999999999999999999999999999999997776554443
No 112
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.85 E-value=0.00032 Score=64.21 Aligned_cols=181 Identities=18% Similarity=0.133 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHhhhC--hhhHHHHHhc--CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 11 SVIRRAADAITNLAHEN--SSIKTRVRME--GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~--~~~~~~i~~~--g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
+.+..|+..|..+..++ ......+.+. ..+..+...+.+....+...|+.++..++..-........ ..+++.|+
T Consensus 22 ~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~l~~Ll 100 (228)
T PF12348_consen 22 EERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DILLPPLL 100 (228)
T ss_dssp HHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHH
Confidence 66888999999998766 2222222211 4556777788887888999999999999974333333332 34788999
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHH----h
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV----Q 162 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~ 162 (548)
+.+.++...++..|..+|..++...+-.... .++.+...+.+.++.++..++..+..+....+.....+. -
T Consensus 101 ~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 101 KKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 9999999999999999999998765411111 155677778889999999999988888755441111111 1
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940 163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 197 (548)
Q Consensus 163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 197 (548)
..+++.+...+.+.++++|..|-.+++.+....+.
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 35778899999999999999999999999755443
No 113
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.85 E-value=2.4e-05 Score=68.73 Aligned_cols=88 Identities=17% Similarity=0.291 Sum_probs=64.8
Q ss_pred cCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCC--ceecCCCCHHHHHHHHHHHhcCcccc---chHh
Q 008940 376 NNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR--DIEIPNIRWEVFELMMRFIYTGSVDV---TLDI 450 (548)
Q Consensus 376 ~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~--~i~l~~~~~~~~~~~l~~~Yt~~~~~---~~~~ 450 (548)
......|+.++.....|++||++|++|+|+|+.+.+++....... .|..-+++-+.|+.+|+|+|||+.-. ...+
T Consensus 126 e~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn 205 (401)
T KOG2838|consen 126 ERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQN 205 (401)
T ss_pred heeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCch
Confidence 334556888888889999999999999999999987654333333 34556889999999999999998743 2344
Q ss_pred HHHHHHHHHHhCh
Q 008940 451 AQDLLRAADQYLL 463 (548)
Q Consensus 451 ~~~ll~~a~~~~~ 463 (548)
+.-|-.+..-|+.
T Consensus 206 ~diL~QL~edFG~ 218 (401)
T KOG2838|consen 206 SDILEQLCEDFGC 218 (401)
T ss_pred HHHHHHHHHhhCC
Confidence 5555555555554
No 114
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.85 E-value=0.00015 Score=66.42 Aligned_cols=182 Identities=21% Similarity=0.191 Sum_probs=116.3
Q ss_pred ccCCHHHHHHHHHHHHHhhccC--cchhhHhhhc--CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCC
Q 008940 48 EFTDTKVQRAAAGALRTLAFKN--DENKNQIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 123 (548)
Q Consensus 48 ~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~--g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 123 (548)
.+.+++.|..|+..|..+..++ ......+... .++..+...+.+....+...|+.++..++......-+.. -...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 5678999999999999999865 2333333322 456677777778888899999999999975433222222 2347
Q ss_pred hHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-chhhhH
Q 008940 124 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQAGIA 202 (548)
Q Consensus 124 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~ 202 (548)
+|.|++.+.++...++..|..+|..++...+.... + ..+.+...+.+.++.+|..++..+..+....+ ....+.
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~-~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK-I----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H-H----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH-H----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 88999999998888999999999999866441111 1 15667778889999999999999999886555 222222
Q ss_pred h----cCChHHHHHhhcCCChhHHHHHHHHHHhcccC
Q 008940 203 H----NGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 235 (548)
Q Consensus 203 ~----~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 235 (548)
. ...++.+...+.+.++++|..|-.++..+...
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 23566688888999999999999999988543
No 115
>PF05536 Neurochondrin: Neurochondrin
Probab=97.84 E-value=0.0019 Score=66.43 Aligned_cols=239 Identities=13% Similarity=0.067 Sum_probs=159.4
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhH---HHHHHhcCChHHHHHhhhcC-------ChHHHHHHHHHHHHhh
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI---KKEVLAAGALQPVIGLLSSC-------CSESQREAALLLGQFA 150 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~ 150 (548)
.++..+.+|+..+.+-|-.++..+.++....+.. ++.+.+.=+.+.+-++|.+. ....+..|+..|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3566788888888778888888888887765532 34566766778888999872 2456777888999998
Q ss_pred cCCchhHHHHHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHH
Q 008940 151 ATDSDCKVHIVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 229 (548)
Q Consensus 151 ~~~~~~~~~~~~~g~v~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 229 (548)
.. ++....---.+.+|.|+..+...+. .+...+..+|..++..++++..+.+.|+++.|.+.+.+ ++.....++.++
T Consensus 86 ~~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RD-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CC-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 64 4433221223589999999988766 89999999999999999999999999999999999987 556678888888
Q ss_pred HhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC
Q 008940 230 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 309 (548)
Q Consensus 230 ~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~ 309 (548)
.+++...... ...+. .. .-..+++.+-..........+...+..|..+-..
T Consensus 164 ~~Lls~~~~~-~~~~~-----------------------~~-----~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 164 LNLLSRLGQK-SWAED-----------------------SQ-----LLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHHHHhcchh-hhhhh-----------------------HH-----HHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 8886543211 11000 00 0012344455555555666678888888888654
Q ss_pred Cc--cceeeecCCc----hHHHHHhhcCCCCcc-chhhHHHHHHHhhh
Q 008940 310 DD--QRTIFIDGGG----LELLLGLLGSTNPKQ-QLDGAVALFKLANK 350 (548)
Q Consensus 310 ~~--~~~~~~~~~~----i~~L~~ll~~~~~~v-~~~a~~~L~~l~~~ 350 (548)
.+ ........+. ..-|..++++.-+.. |..+......|.+.
T Consensus 215 ~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 215 SPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred CCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 43 1222333333 344555666654444 44555555555443
No 116
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.81 E-value=0.00055 Score=66.77 Aligned_cols=199 Identities=28% Similarity=0.346 Sum_probs=142.0
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHH
Q 008940 80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159 (548)
Q Consensus 80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 159 (548)
..++.++..+.+++..++..+...++.+.. ...++.+..++.+.++.++..++.+|+.+- ++
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~----- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DP----- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch-----
Confidence 468889999999999999999999776632 236889999999999999999999888873 22
Q ss_pred HHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940 160 IVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 238 (548)
Q Consensus 160 ~~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 238 (548)
..++.++.++. +++..+|..++++|+.+-.. ..+.+++..+.+..... +.... ....
T Consensus 105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~---a~~~~-----~~~~ 162 (335)
T COG1413 105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGS---AAAAL-----DAAL 162 (335)
T ss_pred ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhh---hhhhc-----cchH
Confidence 36788888888 58889999999999998533 23777888887765333 11111 0000
Q ss_pred hHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec
Q 008940 239 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID 318 (548)
Q Consensus 239 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~ 318 (548)
. .....+...+....+....+.+...+.+.+..+|..|+.+|+.+....
T Consensus 163 ~-----------------------~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------- 211 (335)
T COG1413 163 L-----------------------DVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------- 211 (335)
T ss_pred H-----------------------HHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------
Confidence 0 000111222333344456777888888888889999999998886654
Q ss_pred CCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940 319 GGGLELLLGLLGSTNPKQQLDGAVALFKLAN 349 (548)
Q Consensus 319 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 349 (548)
....+.+...+.+.+..+|..++.+|..+..
T Consensus 212 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 212 VEAADLLVKALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence 3556788888888888888888887776644
No 117
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.80 E-value=0.0005 Score=71.25 Aligned_cols=292 Identities=17% Similarity=0.140 Sum_probs=162.4
Q ss_pred cCCHHHHHHHHHHHHHhhccCcchhhHhhh--cCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHH
Q 008940 49 FTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 126 (548)
Q Consensus 49 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 126 (548)
+.|.+|++.|+.+++.+... -. ..... ...++.+++-+ +++-.|..|++++..++...-.+-..-.-..+++.
T Consensus 581 d~DqeVkeraIscmgq~i~~-fg--D~l~~eL~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~ 655 (1233)
T KOG1824|consen 581 DSDQEVKERAISCMGQIIAN-FG--DFLGNELPRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPE 655 (1233)
T ss_pred cccHHHHHHHHHHHHHHHHH-Hh--hhhhhhhHHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHH
Confidence 35689999999999988752 11 11111 11233344434 46778899999999998764443222233346778
Q ss_pred HHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCC
Q 008940 127 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGG 206 (548)
Q Consensus 127 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 206 (548)
+...+.......+.....++-.+..........-.-.-++.-+..++...+..+-+.|..+|..+....+..........
T Consensus 656 l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~i 735 (1233)
T KOG1824|consen 656 LASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPI 735 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhh
Confidence 88888766666666666666555532211111111112334455556667888889999999999988777665566677
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHh----cccC-Ccch--HHHH---HhcCccccccc--chhhhhhhHHHHHHHHHHHH
Q 008940 207 LVPLLKLLDSKNGSLQHNAAFALYG----LADN-EDNV--ADFI---RVGGVQKLQDG--EFIVQATKDCVAKTLKRLEE 274 (548)
Q Consensus 207 l~~L~~ll~~~~~~v~~~a~~~L~~----l~~~-~~~~--~~~~---~~g~i~~L~~~--~~~~~~~~~~~~~~~~~~~~ 274 (548)
++.++.+++++- ++..+..++.+ +... .+.. ..+. ..-+.+...++ .........|++.-....+.
T Consensus 736 L~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~ 813 (1233)
T KOG1824|consen 736 LDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQ 813 (1233)
T ss_pred HHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccc
Confidence 888999998763 22233332222 2211 1111 1111 11111111100 00112234454433333332
Q ss_pred hhhhhhhHHHHHHHHh--hhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 275 KIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 275 ~~~~~~~~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
.. ......++.=+.+ .+..++.-|...|+.+-+..... -..+.-..++..+++++++++.+|+.+|++++.+.
T Consensus 814 ~s-~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s---~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn 888 (1233)
T KOG1824|consen 814 KS-KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS---PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN 888 (1233)
T ss_pred cc-hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC---cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc
Confidence 21 2234444444443 45667777777887776543311 11233456788889999999999999999998854
No 118
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.79 E-value=2.3e-05 Score=74.88 Aligned_cols=131 Identities=21% Similarity=0.190 Sum_probs=113.7
Q ss_pred CeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHhHH---HHHHHHHHhChHh
Q 008940 389 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQ---DLLRAADQYLLEG 465 (548)
Q Consensus 389 ~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~---~ll~~a~~~~~~~ 465 (548)
++.+.+|+.+++++++.|+.|+..+..+.....+.+.+.+++.++.+..|.|+..-....+... .++.++..++.+.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~ 188 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH 188 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence 5669999999999999999999988777777777889999999999999999977655555554 7888999999999
Q ss_pred HHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHH--hHHHhhCcchh
Q 008940 466 LKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIME--HFDKLSTRPGH 519 (548)
Q Consensus 466 l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~--~~~~~~~~~~f 519 (548)
++..|...+...++..++...+..+..++...+...+..++.. +++.+.+..++
T Consensus 189 lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~ 244 (297)
T KOG1987|consen 189 LKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNE 244 (297)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHH
Confidence 9999999999999999988888999999999999999999986 77777654444
No 119
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.79 E-value=8.4e-05 Score=56.56 Aligned_cols=68 Identities=28% Similarity=0.311 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc--cCCHHHHHHHHHHHHHhhccCcchhhHhhhc
Q 008940 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVEC 79 (548)
Q Consensus 12 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 79 (548)
.+....+.|+++++.++.++..+.+.|+++.++.... ..+|-++++|+.++++++.++++|++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567789999999999999999999999999998765 4569999999999999999999999988764
No 120
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.0016 Score=65.01 Aligned_cols=254 Identities=17% Similarity=0.115 Sum_probs=154.9
Q ss_pred hhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCCh
Q 008940 46 LLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 124 (548)
Q Consensus 46 ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 124 (548)
...+....+|..|..+...+... ++..... .++.++.-+.+..+..+..++..++.++...+.. -......++
T Consensus 224 ~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-----llpsll~~l~~~kWrtK~aslellg~m~~~ap~q-Ls~~lp~ii 297 (569)
T KOG1242|consen 224 NFGDKINKVREAAVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ-LSLCLPDLI 297 (569)
T ss_pred HhhccchhhhHHHHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH-HHHHHhHhh
Confidence 33445678888877777666542 1111111 3445555555558899999999999997665543 444456799
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhc
Q 008940 125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN 204 (548)
Q Consensus 125 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 204 (548)
|.+.+.|.+..+++++.+..++.++++.- ++.. + ...+|.|++.+.++...+.+. ...|+.-.... .++.
T Consensus 298 P~lsevl~DT~~evr~a~~~~l~~~~svi-dN~d-I--~~~ip~Lld~l~dp~~~~~e~-~~~L~~ttFV~-----~V~~ 367 (569)
T KOG1242|consen 298 PVLSEVLWDTKPEVRKAGIETLLKFGSVI-DNPD-I--QKIIPTLLDALADPSCYTPEC-LDSLGATTFVA-----EVDA 367 (569)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhh-ccHH-H--HHHHHHHHHHhcCcccchHHH-HHhhcceeeee-----eecc
Confidence 99999999999999999999999998652 2322 1 237788999998876444332 22222211111 1122
Q ss_pred CCh----HHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhh
Q 008940 205 GGL----VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 280 (548)
Q Consensus 205 ~~l----~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (548)
..+ +.|.+-+...+..+++.++.++.|++..-+....+.. .+ ...
T Consensus 368 psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lap--fl-----------------------------~~L 416 (569)
T KOG1242|consen 368 PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAP--FL-----------------------------PSL 416 (569)
T ss_pred hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhh--hH-----------------------------HHH
Confidence 233 3344445556777889999999999874433222211 00 012
Q ss_pred hHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCcc-chhhHHHHHHHhh
Q 008940 281 LNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQ-QLDGAVALFKLAN 349 (548)
Q Consensus 281 ~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v-~~~a~~~L~~l~~ 349 (548)
+|.+-..+....|++|..++++|+.+...-..+.. .+.+|.+...+.+....+ +.-++..+.....
T Consensus 417 lp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~ 483 (569)
T KOG1242|consen 417 LPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEKSLVDRSGAAQDLSEVLA 483 (569)
T ss_pred hhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccchhhhhhHHHhhhHHHHHh
Confidence 33333344446799999999999888765443332 566777877776544443 4444555554443
No 121
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.0066 Score=59.84 Aligned_cols=270 Identities=15% Similarity=0.124 Sum_probs=149.8
Q ss_pred HhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCCh
Q 008940 45 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 124 (548)
Q Consensus 45 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 124 (548)
..+++.-..+...+++++..++..+ ......+. .+..|-.+|.++....|-.|+++|..|+...|.. .. -+=
T Consensus 271 ~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~-~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k--v~---vcN 342 (898)
T COG5240 271 SWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQ-TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK--VS---VCN 342 (898)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce--ee---ecC
Confidence 3444445778889999988888632 12222222 5667777888899999999999999999876652 00 112
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhh----
Q 008940 125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG---- 200 (548)
Q Consensus 125 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~---- 200 (548)
+-+=.++.+.+..+...|...|..- +.++....+++ .++.++.=+.++ .+..+..++..||...+.+..
T Consensus 343 ~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~SD~---FKiI~ida~rsLsl~Fp~k~~s~l~ 415 (898)
T COG5240 343 KEVESLISDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDMSDG---FKIIAIDALRSLSLLFPSKKLSYLD 415 (898)
T ss_pred hhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhhccC---ceEEeHHHHHHHHhhCcHHHHHHHH
Confidence 2344455666666666666665553 44455544443 344444434433 444445555555544333211
Q ss_pred -----hHhcCCh-------HHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHh-cCcccccccchhhhhhhHHHHH
Q 008940 201 -----IAHNGGL-------VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV-GGVQKLQDGEFIVQATKDCVAK 267 (548)
Q Consensus 201 -----~~~~~~l-------~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~~~~~~~~~~~~~~~ 267 (548)
+.+.|++ +.+...+ +..|+-++.|+..|+.+..+.+.-+..++. |++..=-. .
T Consensus 416 FL~~~L~~eGg~eFK~~~Vdaisd~~-~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP---~---------- 481 (898)
T COG5240 416 FLGSSLLQEGGLEFKKYMVDAISDAM-ENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGP---R---------- 481 (898)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHH-hhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCC---C----------
Confidence 1223332 1222222 123445555555555554433332222111 10000000 0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHH
Q 008940 268 TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 347 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 347 (548)
..-.+..+.++..-+--.+.-+|.+|..||..++.+.+.. +........|-+.+.+.+.++|..|+.+|.++
T Consensus 482 ------a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~--~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 482 ------AKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV--VSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred ------CCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc--ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 0001124455554444467789999999999998765533 23334567788899999999999999999998
Q ss_pred hhhc
Q 008940 348 ANKA 351 (548)
Q Consensus 348 ~~~~ 351 (548)
-...
T Consensus 554 ~~~d 557 (898)
T COG5240 554 RLSD 557 (898)
T ss_pred hhhh
Confidence 6543
No 122
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.75 E-value=7.3e-05 Score=56.71 Aligned_cols=86 Identities=35% Similarity=0.506 Sum_probs=70.3
Q ss_pred hHHHHHHh-ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940 82 LPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 160 (548)
Q Consensus 82 i~~Lv~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 160 (548)
++.|++.+ +++++.+|..++++|+++-. + ..++.|.++++++++.++..++++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889988 78999999999999996621 2 35899999999999999999999999883
Q ss_pred HhcCChHHHHHhhCCC-CHHHHHHHHHHHH
Q 008940 161 VQRGAVRPLIEMLQSP-DVQLREMSAFALG 189 (548)
Q Consensus 161 ~~~g~v~~L~~ll~~~-~~~v~~~a~~~L~ 189 (548)
....++.|..++.++ +..++..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 234889999999875 5567888888875
No 123
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0016 Score=68.41 Aligned_cols=242 Identities=15% Similarity=0.142 Sum_probs=168.5
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 87 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 87 (548)
..+.++.-|+.++..+. .+.+.-..+...|.+..|+.+|.+ .+..|..++..|..+++ +++......+.|++..+..
T Consensus 1784 ~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~ 1860 (2235)
T KOG1789|consen 1784 KHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILS 1860 (2235)
T ss_pred CCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhH
Confidence 34678888999988888 678888889999988888888876 57789999999999998 7888888888888888887
Q ss_pred Hhc-cCChHHHHHHHHHHHHhhcCC---hhHH------------HHHHh-------------------------------
Q 008940 88 MLR-SEDSAIHYEAVGVIGNLVHSS---PNIK------------KEVLA------------------------------- 120 (548)
Q Consensus 88 ll~-~~~~~v~~~a~~~L~~l~~~~---~~~~------------~~~~~------------------------------- 120 (548)
++. +..+..|.+++..++.+..+. |..+ +.+.+
T Consensus 1861 ~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~ 1940 (2235)
T KOG1789|consen 1861 ILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGI 1940 (2235)
T ss_pred HHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHH
Confidence 765 567788888999998886431 1000 00000
Q ss_pred -------------------------------------------------------------cCChHHHHHhhhcCCh--H
Q 008940 121 -------------------------------------------------------------AGALQPVIGLLSSCCS--E 137 (548)
Q Consensus 121 -------------------------------------------------------------~g~i~~L~~ll~~~~~--~ 137 (548)
.|.+..+..++...++ .
T Consensus 1941 i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh 2020 (2235)
T KOG1789|consen 1941 IDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQH 2020 (2235)
T ss_pred HHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccc
Confidence 0001111222221111 1
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC
Q 008940 138 SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK 217 (548)
Q Consensus 138 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~ 217 (548)
.......++..|.+..|...+.+-..|.+|.++..+...+..+-..|+++|..|+.+.-..+.+.....+..++..++..
T Consensus 2021 ~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~ 2100 (2235)
T KOG1789|consen 2021 ELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQ 2100 (2235)
T ss_pred hhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhc
Confidence 22222334455555666666677778999999999987766677899999999999888888888888888888887654
Q ss_pred ChhHHHHHHHHHHhcccC--CcchHHHHHhcCcccccc
Q 008940 218 NGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQD 253 (548)
Q Consensus 218 ~~~v~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ 253 (548)
- .....|+.+|.++... .+-..+..+.|.++-|+.
T Consensus 2101 ~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~ 2137 (2235)
T KOG1789|consen 2101 P-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQ 2137 (2235)
T ss_pred c-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHH
Confidence 3 3345788888888542 334455667788877654
No 124
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.00017 Score=71.63 Aligned_cols=284 Identities=16% Similarity=0.125 Sum_probs=149.9
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCCh-----hHHHH
Q 008940 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-----NIKKE 117 (548)
Q Consensus 43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~-----~~~~~ 117 (548)
|..+..+.+..||..|+.+|..|..+..-. . -.....++++.+.+..+|..|+.+++-...-.+ +..+.
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-~-----~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLS-K-----ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccccccc-H-----HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 445555556666666666666555421111 1 135567889999999999999777765543331 11112
Q ss_pred HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh--h---
Q 008940 118 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL--A--- 192 (548)
Q Consensus 118 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l--~--- 192 (548)
-....+...+...+.+-+..++..|+.+|+.+-..+++...+..+..++. -++.... ..+.......+- +
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms----~lRRkr~-ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMS----RLRRKRT-AHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhh----hhhhhhh-cccchHHHHhcCCcccCc
Confidence 22234677888888888888999999999888655555444444433333 2221100 000111111111 0
Q ss_pred ---------cCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhH
Q 008940 193 ---------QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKD 263 (548)
Q Consensus 193 ---------~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~ 263 (548)
..+.....++..|+...++.-+.+.--+|+..|+..++.|+.+...-..- .+..|+++..+.. ..
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~----aldfLvDMfNDE~--~~ 425 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR----ALDFLVDMFNDEI--EV 425 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH----HHHHHHHHhccHH--HH
Confidence 01112234667788888888888877899999999999998754331110 1112222111111 11
Q ss_pred HHHHHHHHHH-----HhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHH-Hhhc--CCCCc
Q 008940 264 CVAKTLKRLE-----EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL-GLLG--STNPK 335 (548)
Q Consensus 264 ~~~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~-~ll~--~~~~~ 335 (548)
...++...+. ..+....++.++..|.+.++++|++.-..|.+.- +.+.+++...+ .++. ..-|.
T Consensus 426 VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~--------~~d~~~i~m~v~~lL~~L~kyPq 497 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELLKNAR--------VSDLECIDMCVAHLLKNLGKYPQ 497 (823)
T ss_pred HHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHHhhhCCC
Confidence 1111111111 2234456677777777777777776655554331 22223333322 2333 13344
Q ss_pred cchhhHHHHHHHhhhc
Q 008940 336 QQLDGAVALFKLANKA 351 (548)
Q Consensus 336 v~~~a~~~L~~l~~~~ 351 (548)
-+-....++..+..+.
T Consensus 498 Drd~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 498 DRDEILRCMGRIGQNH 513 (823)
T ss_pred CcHHHHHHHHHHhccC
Confidence 5556666677776654
No 125
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.73 E-value=0.00014 Score=71.71 Aligned_cols=262 Identities=15% Similarity=0.135 Sum_probs=163.7
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhH--HHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI--KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 158 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 158 (548)
++..++.+|+++.+.+|..|+.+.+.|+..-..| .+.+...|. .|..-+....+++.-..+.+++.+.+...-...
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 4556678889999999999999999886321211 122222232 355556667788777666666666533211000
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHh-cCChHHHHHhhcCCChhHHHHHHHHHHhcccCCc
Q 008940 159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 237 (548)
Q Consensus 159 ~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 237 (548)
+-=-.|++|.|...|++....+..+....++.+|...+......+ ....-.|+.+|++-+.+++++|...++.++.--.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG 762 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG 762 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence 001257999999999999999999999999999977654221111 1123347888899999999999999998876332
Q ss_pred chHHHHHhcCcccccccchhhh-hhhHHHHHHHHHHHHhhh-hhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC--Cccc
Q 008940 238 NVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTLKRLEEKIH-GRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQR 313 (548)
Q Consensus 238 ~~~~~~~~g~i~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~--~~~~ 313 (548)
.+.. +..|++...... ....|.+-+.....+... -.++|.|+.=-..++..+|...+.+++.+-.. ...+
T Consensus 763 Pqdv------L~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~ 836 (975)
T COG5181 763 PQDV------LDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASL 836 (975)
T ss_pred HHHH------HHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHH
Confidence 2222 222222222111 123343333333333321 23566666555557888999999998887543 2233
Q ss_pred eeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940 314 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 314 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 352 (548)
..+. ...|.|...+.+.++..|.-|...+..|+-++.
T Consensus 837 dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 837 DYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 3322 345777778888888888888888888877643
No 126
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.0017 Score=65.60 Aligned_cols=215 Identities=12% Similarity=0.126 Sum_probs=129.5
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHH
Q 008940 82 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 161 (548)
Q Consensus 82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 161 (548)
.+.++.+|++..+-+|..|+.++..+....|+.- ...+|.|..-|.++++.++..|+..++.|+..+|.+-.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--- 217 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--- 217 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence 4455677777777788888877777765544431 13577777788888888888888888888877665533
Q ss_pred hcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC-hhHHHHHHHHHHhc--ccC-C
Q 008940 162 QRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGL--ADN-E 236 (548)
Q Consensus 162 ~~g~v~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l--~~~-~ 236 (548)
..-|.+..+|... +.=+....+..+++|+.-.+.- ....+++|.+++.+.. ..+...++.++... +.. +
T Consensus 218 --~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL----gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 218 --QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL----GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMS 291 (877)
T ss_pred --cccHHHHHHHhccCCCeehHHHHHHHhhccccCchh----hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCC
Confidence 2456677776543 2234455566667776444321 1135667777777654 23334444433222 211 1
Q ss_pred cchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc-ccee
Q 008940 237 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTI 315 (548)
Q Consensus 237 ~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~-~~~~ 315 (548)
++...+ .-+++.|-.++.++|+..+.-++.+++.++.... .-+
T Consensus 292 d~~asi-----------------------------------qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq- 335 (877)
T KOG1059|consen 292 DHSASI-----------------------------------QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ- 335 (877)
T ss_pred CcHHHH-----------------------------------HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-
Confidence 111111 0145666677777888888888888877765332 111
Q ss_pred eecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 316 FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 316 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
.--..+++.|.+.++.+|..|...|.-+.++
T Consensus 336 ----a~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 336 ----AHKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred ----HhHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 1235667778888888888888877777664
No 127
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.69 E-value=0.00021 Score=54.40 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc--cCChHHHHHHHHHHHHhhcCChhHHHHHHhc
Q 008940 54 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 121 (548)
Q Consensus 54 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 121 (548)
.+...++.|++++..++.++..+.+.|+++.++.... +.++-++++|++++++|+.++++.++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567789999999999999999999999999999876 5689999999999999999999998777653
No 128
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.00048 Score=66.07 Aligned_cols=303 Identities=17% Similarity=0.140 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhcc-----CcchhhHhhhcCChHHH
Q 008940 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-----NDENKNQIVECNALPTL 85 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~g~i~~L 85 (548)
.++-.+..+|..++..-.-.+..+.+ ....+...+...++.+++++...+..+..+ .|+..+.-...|-.-.+
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 46677888888887543333333332 223344455567899999999988877642 33333333332211111
Q ss_pred HH------Hh-ccCChHHHHHHHHHHHHhhcCCh----hHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc
Q 008940 86 IL------ML-RSEDSAIHYEAVGVIGNLVHSSP----NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 154 (548)
Q Consensus 86 v~------ll-~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 154 (548)
+- .. .+.....+...+..+.++..... +-++. -.+..+..+-.+++.-++..|.+++.-..-+..
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T----~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~ 423 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT----LCITFLLGCNDSKNRLVKAAASRALGVYVLHPC 423 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh----hhHHHHhcccchHHHHHHHHHHhhceeEEeccc
Confidence 11 11 12245667777878877753211 10000 011111111122233355556666655544422
Q ss_pred hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC----Ccc-hhhhHhc-C-ChHHHHHhhc---CCChhHHHH
Q 008940 155 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD----MHN-QAGIAHN-G-GLVPLLKLLD---SKNGSLQHN 224 (548)
Q Consensus 155 ~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~-~~~~~~~-~-~l~~L~~ll~---~~~~~v~~~ 224 (548)
.......-..+.......+.++.-..|+.++|+++|++.- -++ +..--+. | .+..+++... ..+..|+.+
T Consensus 424 lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~n 503 (728)
T KOG4535|consen 424 LRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSN 503 (728)
T ss_pred hhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence 2223333345556666667776778999999999998722 111 1111111 1 1222222222 235678888
Q ss_pred HHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhh
Q 008940 225 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA 304 (548)
Q Consensus 225 a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~ 304 (548)
+..+|+|+..--+ .+.+.+ ..+..+.....-+-.........||.++|.+++
T Consensus 504 avraLgnllQvlq---~i~~~~-------------------------~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~g 555 (728)
T KOG4535|consen 504 AVRALGNLLQFLQ---PIEKPT-------------------------FAEIIEESIQALISTVLTEAAMKVRWNACYAMG 555 (728)
T ss_pred HHHHHhhHHHHHH---Hhhhcc-------------------------HHHHHHHHHHhcccceecccccccchHHHHHHH
Confidence 8888888864211 011111 000111111111111223356789999999999
Q ss_pred hccCCCccc--eeeecCCchHHHHHhhc-CCCCccchhhHHHHHHH
Q 008940 305 HLCSPDDQR--TIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKL 347 (548)
Q Consensus 305 ~l~~~~~~~--~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l 347 (548)
||..++... ..-......+.|..|+. ..|-+||.+|+.+|..-
T Consensus 556 NLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 556 NLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred HhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 999887642 22233345677777775 68899999999877643
No 129
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.0022 Score=57.07 Aligned_cols=219 Identities=19% Similarity=0.234 Sum_probs=135.4
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC--ChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940 42 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVL 119 (548)
Q Consensus 42 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~ 119 (548)
.+.+...+++...+...+.+|+.+.. ...++.|+..+.+. .+-+|..|..+|+.+. + +
T Consensus 40 ~i~ka~~d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~------- 99 (289)
T KOG0567|consen 40 AITKAFIDDSALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-P------- 99 (289)
T ss_pred HHHHhcccchhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-h-------
Confidence 33444444444555566666666653 35788999988754 5778999999999885 2 2
Q ss_pred hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCC---------------chhHHHHHhcCChHHHHHhhCCCCH-H-HHH
Q 008940 120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATD---------------SDCKVHIVQRGAVRPLIEMLQSPDV-Q-LRE 182 (548)
Q Consensus 120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---------------~~~~~~~~~~g~v~~L~~ll~~~~~-~-v~~ 182 (548)
+..+.+-++.+++..++++.+..++..+--.+ |..+ ...+-+..+-..+.+.+. . -|.
T Consensus 100 --~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry 174 (289)
T KOG0567|consen 100 --ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERY 174 (289)
T ss_pred --hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHH
Confidence 34667777777777778877777776663111 1111 011123333333333221 1 234
Q ss_pred HHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhh
Q 008940 183 MSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATK 262 (548)
Q Consensus 183 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~ 262 (548)
.+.+.|.|+... ..+..+.+-+..++.-.+..++.++++|-...
T Consensus 175 ~amF~LRn~g~E----------eaI~al~~~l~~~SalfrhEvAfVfGQl~s~~-------------------------- 218 (289)
T KOG0567|consen 175 RAMFYLRNIGTE----------EAINALIDGLADDSALFRHEVAFVFGQLQSPA-------------------------- 218 (289)
T ss_pred hhhhHhhccCcH----------HHHHHHHHhcccchHHHHHHHHHHHhhccchh--------------------------
Confidence 455555554221 12445555566666777788888888775332
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHh--hhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhh
Q 008940 263 DCVAKTLKRLEEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDG 340 (548)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 340 (548)
.++.|...|.. .++.+|..|+.||+.++. ...++.|.+.+++..+-|+..+
T Consensus 219 -----------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc 271 (289)
T KOG0567|consen 219 -----------------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESC 271 (289)
T ss_pred -----------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHH
Confidence 45666666665 689999999999998765 4567888889988887777777
Q ss_pred HHHHHHHh
Q 008940 341 AVALFKLA 348 (548)
Q Consensus 341 ~~~L~~l~ 348 (548)
..+|--+-
T Consensus 272 ~valdm~e 279 (289)
T KOG0567|consen 272 EVALDMLE 279 (289)
T ss_pred HHHHHHHH
Confidence 76665543
No 130
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.0029 Score=63.79 Aligned_cols=221 Identities=15% Similarity=0.170 Sum_probs=136.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
...+-++.+|+-+|..|-+.+|+.. ...+....++.+|.+.+..+...+...+.-++..+++....-... .+..|.
T Consensus 159 ~~~~~vkqkaALclL~L~r~spDl~---~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~ 234 (938)
T KOG1077|consen 159 SSMDYVKQKAALCLLRLFRKSPDLV---NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLS 234 (938)
T ss_pred cchHHHHHHHHHHHHHHHhcCcccc---ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHH
Confidence 3445678888888888887766632 223556788888888887788888888888887666544332211 122222
Q ss_pred HHhc-------------cCChHHHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhhhc----CC---hHHHHHHHHH
Q 008940 87 LMLR-------------SEDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLLSS----CC---SESQREAALL 145 (548)
Q Consensus 87 ~ll~-------------~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~----~~---~~~~~~a~~~ 145 (548)
.... -+.+=++...+++|...-.. ++..+....+ .+..++...+. .+ ...+...+.-
T Consensus 235 riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFe 312 (938)
T KOG1077|consen 235 RIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFE 312 (938)
T ss_pred HHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHH
Confidence 2221 13445666677777666211 1222222222 22222222221 11 1122222333
Q ss_pred HHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhc-CCChhHHHH
Q 008940 146 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHN 224 (548)
Q Consensus 146 L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~ 224 (548)
..+++.+-+.....+. .++..|.+++.+.++.+|..++..++.|+........+... .+.++..|+ ..+..+++.
T Consensus 313 aI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrr 388 (938)
T KOG1077|consen 313 AISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRR 388 (938)
T ss_pred HHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHH
Confidence 3444444344444444 37888999999999999999999999999887777666654 777888888 678899999
Q ss_pred HHHHHHhcccCCc
Q 008940 225 AAFALYGLADNED 237 (548)
Q Consensus 225 a~~~L~~l~~~~~ 237 (548)
|+..|..+|..+.
T Consensus 389 avDLLY~mcD~~N 401 (938)
T KOG1077|consen 389 AVDLLYAMCDVSN 401 (938)
T ss_pred HHHHHHHHhchhh
Confidence 9999999996553
No 131
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.0089 Score=61.21 Aligned_cols=273 Identities=15% Similarity=0.096 Sum_probs=169.0
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 118 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 118 (548)
..|..++...+.+.+++...-..|...++.+++-.-. -+..+-+-|.++|+.+|..|+++|..+= -.+
T Consensus 72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-----SIntfQk~L~DpN~LiRasALRvlSsIR-------vp~ 139 (968)
T KOG1060|consen 72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-----SINTFQKALKDPNQLIRASALRVLSSIR-------VPM 139 (968)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-----eHHHHHhhhcCCcHHHHHHHHHHHHhcc-------hhh
Confidence 3456777777777888877777777777643332222 3567778889999999999999987772 222
Q ss_pred HhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch
Q 008940 119 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 198 (548)
Q Consensus 119 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 198 (548)
+..=.+-.+-++..+..+-||+.|+.|+-.+-+-+++...+ .++.+-.+|.+.++.|.-.|+.++-.+|-+ +
T Consensus 140 IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evCPe---r 211 (968)
T KOG1060|consen 140 IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPE---R 211 (968)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhchh---H
Confidence 22112334455666778899999999999998877766554 345666778889999999999999888743 2
Q ss_pred hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcch-----HHHHHhcCcccccccchhhhhhhHHHHHHHHHHH
Q 008940 199 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-----ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 273 (548)
Q Consensus 199 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~ 273 (548)
-.++ .+-...+-+++.+-+.--|...+..|.+.|+..-.. ......|.--.+.+......+.
T Consensus 212 ldLI-HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P------------ 278 (968)
T KOG1060|consen 212 LDLI-HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTP------------ 278 (968)
T ss_pred HHHh-hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCC------------
Confidence 2222 244556777777666555666666776665431110 0111111000111100000000
Q ss_pred Hhhhhh---hhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 274 EKIHGR---VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 274 ~~~~~~---~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
-..+.+ .++..-.++.+.++.+..+++.+..+++-..+.. ..++.|+++|.+ +..+|.-....+..++..
T Consensus 279 ~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~------~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~ 351 (968)
T KOG1060|consen 279 YVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVT------KIAKALVRLLRS-NREVQYVVLQNIATISIK 351 (968)
T ss_pred cccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHH------HHHHHHHHHHhc-CCcchhhhHHHHHHHHhc
Confidence 000111 3444446778889999999999999998755332 357889998875 456676666666666554
Q ss_pred c
Q 008940 351 A 351 (548)
Q Consensus 351 ~ 351 (548)
.
T Consensus 352 ~ 352 (968)
T KOG1060|consen 352 R 352 (968)
T ss_pred c
Confidence 3
No 132
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.55 E-value=0.00048 Score=69.47 Aligned_cols=213 Identities=15% Similarity=0.116 Sum_probs=135.7
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 88 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 88 (548)
-|+++-..+.+|..+.....-.+..=-..+++|.|...|++....++..++..++.++...++....--.--+---|+++
T Consensus 854 ypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlel 933 (1172)
T KOG0213|consen 854 YPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLEL 933 (1172)
T ss_pred cHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHH
Confidence 35555555555555542111111111123789999999999999999999999999998666632221122344467888
Q ss_pred hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940 89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 168 (548)
Q Consensus 89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~ 168 (548)
|++.+.++|+.|...++-++.. +.-..++..|+.-|+..+...+.....+++-.+..+.. ..++|.
T Consensus 934 LkahkK~iRRaa~nTfG~Iaka-------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPa 999 (1172)
T KOG0213|consen 934 LKAHKKEIRRAAVNTFGYIAKA-------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPA 999 (1172)
T ss_pred HHHHHHHHHHHHHhhhhHHHHh-------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHH
Confidence 8888999999999999988632 22223444555555444444444334444444322211 136677
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCcc--hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCc
Q 008940 169 LIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 237 (548)
Q Consensus 169 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 237 (548)
|+.--+.++..|+.-.+.+++.+...-.. +..+. ...|.|...|.+.++.-+..|+.++.+++-+..
T Consensus 1000 lmneYrtPe~nVQnGVLkalsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1000 LMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred HHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence 77777778888999888888888754332 22222 345667778888888888999999999987643
No 133
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.00074 Score=67.34 Aligned_cols=218 Identities=18% Similarity=0.226 Sum_probs=142.4
Q ss_pred hhhHHHHHHHHHHHHHhhhCh-hhHHHHHhcC-------------CchHHHHhhccCCHHHHHHHHHHHHHhhccCc---
Q 008940 8 AVNSVIRRAADAITNLAHENS-SIKTRVRMEG-------------GIPPLVELLEFTDTKVQRAAAGALRTLAFKND--- 70 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g-------------~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--- 70 (548)
..+..++.+++.|.+++.+.+ ..+....+ | .....++.+++++..||..|++.+.-.+.-.+
T Consensus 191 s~~~d~~~~~~~l~~~~~~~D~~Vrt~A~e-glL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~ 269 (823)
T KOG2259|consen 191 SLTHDREHAARGLIYLEHDQDFRVRTHAVE-GLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL 269 (823)
T ss_pred cccccHHHHHHHHHHHhcCCCcchHHHHHH-HHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc
Confidence 345566777777777774322 22333222 2 24566778888889999999887776654221
Q ss_pred --chhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH--------------------------------
Q 008940 71 --ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK-------------------------------- 116 (548)
Q Consensus 71 --~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-------------------------------- 116 (548)
++-+.=....+...+-..+++.+..+|-.|+.+|+.+-..++++-.
T Consensus 270 e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 270 ERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSS 349 (823)
T ss_pred cchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCccc
Confidence 1111111112455666677788888888888888877544333211
Q ss_pred ------------------HHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCH
Q 008940 117 ------------------EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 178 (548)
Q Consensus 117 ------------------~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~ 178 (548)
.++..|+-..++.-+.++-.+|++.|+..++.|+...|.... ..+..|++++.++..
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~ 424 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIE 424 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHH
Confidence 112223334455555555568999999999999987776543 367899999999999
Q ss_pred HHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940 179 QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 236 (548)
Q Consensus 179 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 236 (548)
.||..|..+|..++..-. +++.-++.++..|.+.++++++..-..|.+.--.+
T Consensus 425 ~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d 477 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKNARVSD 477 (823)
T ss_pred HHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCc
Confidence 999999999999986632 23345777888888888888877666666553333
No 134
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.00079 Score=68.66 Aligned_cols=181 Identities=15% Similarity=0.074 Sum_probs=125.9
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 118 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 118 (548)
..+.++......|-+.+...-.-+.+.+...|+... +.+..+++=..++++.+|..|++.++.+-. +...+
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~d~np~iR~lAlrtm~~l~v--~~i~e-- 120 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCEDPNPLIRALALRTMGCLRV--DKITE-- 120 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCCCCCHHHHHHHhhceeeEee--hHHHH--
Confidence 456677777777877888887888888876555432 356667777778999999999999988843 22222
Q ss_pred HhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch
Q 008940 119 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 198 (548)
Q Consensus 119 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 198 (548)
-....+..++++.++.+++.++....++-. .........|.++.|-+++.+++|.|..+|+.+|..+.....+.
T Consensus 121 ---y~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~ 194 (734)
T KOG1061|consen 121 ---YLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV 194 (734)
T ss_pred ---HHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC
Confidence 246689999999999999999999988853 33455777899999999999999999999999999998665531
Q ss_pred hhh-HhcCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940 199 AGI-AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 199 ~~~-~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 234 (548)
... .....+..++..+...+.--+...+.++.+...
T Consensus 195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p 231 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVP 231 (734)
T ss_pred CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCC
Confidence 111 111122334444444444444444445544443
No 135
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.0039 Score=68.24 Aligned_cols=318 Identities=15% Similarity=0.116 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC
Q 008940 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 92 (548)
Q Consensus 13 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~ 92 (548)
+..|+..+..++....+.-.... ...||.|.+.--+++..||..-..+...+..+.....+...+ .+++-|+.-|.+.
T Consensus 974 k~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~k 1051 (1702)
T KOG0915|consen 974 KKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSK 1051 (1702)
T ss_pred ccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccch
Confidence 45566666677643222111111 246777777778899999866555555555432333334444 4888889889999
Q ss_pred ChHHHHHHHHHHHHhhcCChhHHHHHHh--cCChHHHHHhhhcCChHHHHH---HHHHHHHhhcCCchhHHHHHhcCChH
Q 008940 93 DSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSCCSESQRE---AALLLGQFAATDSDCKVHIVQRGAVR 167 (548)
Q Consensus 93 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~---a~~~L~~l~~~~~~~~~~~~~~g~v~ 167 (548)
.+++|+.++-+|..|..+.+. +.+.+ ......+.+.+.+-.+.+|+. ++.+|..+|...-+...-.-...++.
T Consensus 1052 ewRVReasclAL~dLl~g~~~--~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~ 1129 (1702)
T KOG0915|consen 1052 EWRVREASCLALADLLQGRPF--DQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD 1129 (1702)
T ss_pred hHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH
Confidence 999999999999999877543 22222 134455566666555555554 45566666522111000000011233
Q ss_pred HHHHhhC-----CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHH-HHHHHHHhcccCCcchHH
Q 008940 168 PLIEMLQ-----SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH-NAAFALYGLADNEDNVAD 241 (548)
Q Consensus 168 ~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~-~a~~~L~~l~~~~~~~~~ 241 (548)
.+++.|- +.-+++|..++.++..|+......-.-.-...++.|++....-++.+.. .++.+ -+. ....
T Consensus 1130 ~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~-----e~ea 1203 (1702)
T KOG0915|consen 1130 IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL-INI-----ETEA 1203 (1702)
T ss_pred HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh-hhh-----HHHH
Confidence 3333332 4567899999999999997766532212222355555555554444433 22222 111 1111
Q ss_pred HH--HhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCC--Cccceee
Q 008940 242 FI--RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSP--DDQRTIF 316 (548)
Q Consensus 242 ~~--~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~--~~~~~~~ 316 (548)
+- +..+.. ..+...-..+++..+..-.=...+|++..++++ -.-..+..++..+..|+.. .+.. .
T Consensus 1204 lDt~R~s~ak--------sspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt--P 1273 (1702)
T KOG0915|consen 1204 LDTLRASAAK--------SSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT--P 1273 (1702)
T ss_pred HHHHHHhhhc--------CCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC--c
Confidence 10 000000 000111122334444444445678888899887 4667788888888887642 2222 1
Q ss_pred ecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 317 IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 317 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
.-...+..++..+.+.++.+++.-+.+++.|+.-
T Consensus 1274 ~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~ 1307 (1702)
T KOG0915|consen 1274 YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKF 1307 (1702)
T ss_pred chhHHHHHHhhccccccHHHHHHHHHHHHHHHhc
Confidence 2223466777777888999999999999998874
No 136
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.51 E-value=0.0005 Score=50.12 Aligned_cols=74 Identities=26% Similarity=0.412 Sum_probs=60.8
Q ss_pred CCeEEEchHHHHhcccHHHHhhhcCCC--CCCCCCceecCCCCHHHHHHHHHHH-----hcCc------cccchHhHHHH
Q 008940 388 EGRRFYAHRICLLASSDAFRAMFDGGY--REKDARDIEIPNIRWEVFELMMRFI-----YTGS------VDVTLDIAQDL 454 (548)
Q Consensus 388 ~~~~~~~h~~il~~~s~~f~~~~~~~~--~e~~~~~i~l~~~~~~~~~~~l~~~-----Yt~~------~~~~~~~~~~l 454 (548)
||+.|-..|. .|..|+-.|+||+|.. .|...+++.+++++...++.+.+|+ |++. ++++++.+.+|
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleL 103 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALEL 103 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHH
Confidence 4567766665 4668999999999764 5566779999999999999999998 4554 45889999999
Q ss_pred HHHHHHhC
Q 008940 455 LRAADQYL 462 (548)
Q Consensus 455 l~~a~~~~ 462 (548)
+.+|+++.
T Consensus 104 L~aAn~Le 111 (112)
T KOG3473|consen 104 LMAANYLE 111 (112)
T ss_pred HHHhhhhc
Confidence 99999985
No 137
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.51 E-value=0.0076 Score=63.42 Aligned_cols=332 Identities=15% Similarity=0.114 Sum_probs=200.6
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChH
Q 008940 4 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 83 (548)
Q Consensus 4 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 83 (548)
.+....|.++..+++-+.+++.. ........+.++.+..+..++...||+.|...+..+...-+. .. =....+.+
T Consensus 245 lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~-~~-d~~~~~~~ 319 (759)
T KOG0211|consen 245 LCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDD-DD-DVVKSLTE 319 (759)
T ss_pred hccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCC-ch-hhhhhhhH
Confidence 34556678888888888888843 222566678899999999999999999999988888752111 10 22234788
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCC-chhHHHHHh
Q 008940 84 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQ 162 (548)
Q Consensus 84 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~ 162 (548)
.++...+++++.++.........+... ..........++....++.+...+++...+.-...++... ......+..
T Consensus 320 ~l~~~~~d~~~~v~~~~~~~~~~L~~~---~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~ 396 (759)
T KOG0211|consen 320 SLVQAVEDGSWRVSYMVADKFSELSSA---VGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPD 396 (759)
T ss_pred HHHHHhcChhHHHHHHHhhhhhhHHHH---hccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccch
Confidence 899999999999999998888887532 1112233345777888888877777777776666665332 233344555
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc-CCcchHH
Q 008940 163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVAD 241 (548)
Q Consensus 163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~ 241 (548)
...+|.+-.+..+.++.++...+....++.-..+. .-.-....+.++..+++..+.++.+..+.+..+-. ++.....
T Consensus 397 ~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~ 474 (759)
T KOG0211|consen 397 SSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIS 474 (759)
T ss_pred hhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccch
Confidence 66788888889999999999888777777533321 11112345667777888888888888876655532 2222222
Q ss_pred HHHhcCcccccccchhhhhhhHHHHHHHHHHH--------HhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccc
Q 008940 242 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE--------EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR 313 (548)
Q Consensus 242 ~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~ 313 (548)
......++.+....... ..++.....+.+. ...+...-+.+...+.+....++.+|+..+..++..-. .
T Consensus 475 ~~s~slLp~i~el~~d~--~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~ 551 (759)
T KOG0211|consen 475 TVSNSLLPAIVELAEDL--LWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-S 551 (759)
T ss_pred hhhhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-c
Confidence 22333333333211111 2333333332221 22233334444455555667788888887777753211 0
Q ss_pred eeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940 314 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 349 (548)
Q Consensus 314 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 349 (548)
. -.....++.++.....++...|...+.++..++.
T Consensus 552 ~-w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~ 586 (759)
T KOG0211|consen 552 E-WARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE 586 (759)
T ss_pred c-hhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH
Confidence 0 0111235555555555556666666666555544
No 138
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.011 Score=60.65 Aligned_cols=276 Identities=15% Similarity=0.128 Sum_probs=155.5
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 119 (548)
|..+-+-|+++|+.+|..|+++|..+=- .++..-.+-++-++..++.+-||..|+-++-.+-+-.++.+..+
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL- 181 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL- 181 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-
Confidence 4556667778899999988888876542 11111123334456668899999999999999976666655543
Q ss_pred hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHH-----------------------------
Q 008940 120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI----------------------------- 170 (548)
Q Consensus 120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~----------------------------- 170 (548)
+..+-.+|.+.++.|.-.|+.+.-.+|- +....+. +-...+.
T Consensus 182 ----~e~I~~LLaD~splVvgsAv~AF~evCP---erldLIH--knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P 252 (968)
T KOG1060|consen 182 ----EEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP 252 (968)
T ss_pred ----HHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHhh--HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc
Confidence 3455666777777777777776666651 1111111 1111122
Q ss_pred -----------------------------------------HhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHH
Q 008940 171 -----------------------------------------EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP 209 (548)
Q Consensus 171 -----------------------------------------~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 209 (548)
.++.+.++.+...++.+++.++-..+.. ..+.+
T Consensus 253 ~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~------~i~ka 326 (968)
T KOG1060|consen 253 TVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVT------KIAKA 326 (968)
T ss_pred cccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHH------HHHHH
Confidence 2233445556666666666665332111 23455
Q ss_pred HHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhh--hHHHHHHHHHHHHhhhh----hhhHH
Q 008940 210 LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT--KDCVAKTLKRLEEKIHG----RVLNH 283 (548)
Q Consensus 210 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~ 283 (548)
|+++|.+. .+++...+..+..++..... ...+-.+.-|....+ ..|. .-++.+..+.+. .+++.
T Consensus 327 LvrLLrs~-~~vqyvvL~nIa~~s~~~~~--------lF~P~lKsFfv~ssDp~~vk~-lKleiLs~La~esni~~ILrE 396 (968)
T KOG1060|consen 327 LVRLLRSN-REVQYVVLQNIATISIKRPT--------LFEPHLKSFFVRSSDPTQVKI-LKLEILSNLANESNISEILRE 396 (968)
T ss_pred HHHHHhcC-CcchhhhHHHHHHHHhcchh--------hhhhhhhceEeecCCHHHHHH-HHHHHHHHHhhhccHHHHHHH
Confidence 66666433 34444444445444432211 111111111211111 1111 112222233332 35666
Q ss_pred HHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940 284 LLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 284 L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 352 (548)
+-...++.+..+...+..+|+.++.... -+....+.-|+.++.+.+..|...+...+..|.+...
T Consensus 397 ~q~YI~s~d~~faa~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 397 LQTYIKSSDRSFAAAAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 6667777777788888889998875422 1223457788999999999999999999999987643
No 139
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.44 E-value=0.00024 Score=48.15 Aligned_cols=55 Identities=31% Similarity=0.381 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 008940 136 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 191 (548)
Q Consensus 136 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l 191 (548)
+.++..|+++|++++...++.... ....+++.|+.+|+++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999988665444333 4567999999999999999999999999975
No 140
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.42 E-value=0.0011 Score=65.62 Aligned_cols=214 Identities=14% Similarity=0.087 Sum_probs=134.7
Q ss_pred hhHHHHHHHHHHHHHhhhC--hhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 9 VNSVIRRAADAITNLAHEN--SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
-|+++-..+.++..+.... ...+.. ..|++|.|...|++....++...+..++.++...++....--.--+---|+
T Consensus 659 ypEvLgsil~Ai~~I~sv~~~~~mqpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLv 736 (975)
T COG5181 659 YPEVLGSILKAICSIYSVHRFRSMQPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELV 736 (975)
T ss_pred cHHHHHHHHHHHHHHhhhhcccccCCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 3555555555555554211 111111 248899999999999999999999999999986666322211122344678
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
+.|.+-+.++|+.|...++-++.. +.-.+++..|+.-|+..+...+.....+++-.+..+-. ..++
T Consensus 737 d~Lks~nKeiRR~A~~tfG~Is~a-------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVl 802 (975)
T COG5181 737 DSLKSWNKEIRRNATETFGCISRA-------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVL 802 (975)
T ss_pred HHHHHhhHHHHHhhhhhhhhHHhh-------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhH
Confidence 888889999999999999988632 22223444555555544444444334444444322111 2356
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940 167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 238 (548)
Q Consensus 167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 238 (548)
|.|+.=-..++..++.-.+.+++.+-..-.....-.-....|.|-..|.+.++.-+..|...+.+|+-+...
T Consensus 803 P~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 803 PTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred HHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 777666666788889888888887765433321111112455566788888888899999999999876543
No 141
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.41 E-value=0.00023 Score=55.53 Aligned_cols=48 Identities=10% Similarity=0.207 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHHHH
Q 008940 483 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 530 (548)
Q Consensus 483 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~~ 530 (548)
|+.++.+|..|+.+.|.+.|..||.+||..+.++++|.+||.+.+..+
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~i 48 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSL 48 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHH
Confidence 567899999999999999999999999999999999999976654443
No 142
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.41 E-value=0.014 Score=61.05 Aligned_cols=163 Identities=16% Similarity=0.150 Sum_probs=121.1
Q ss_pred hHHHHHHHHH-HHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940 10 NSVIRRAADA-ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 88 (548)
Q Consensus 10 ~~~~~~a~~~-L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 88 (548)
+..+..|++- |+.++.+++ ... ..+.+++...+.|.+++...-.-|...+..+|+.... .+..+.+=
T Consensus 33 ~~~kidAmK~iIa~M~~G~d-mss------Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kD 100 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGED-MSS------LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKD 100 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCC-hHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhh
Confidence 3445556555 444443333 222 3345677666788888888888888888866632222 35677788
Q ss_pred hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940 89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 168 (548)
Q Consensus 89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~ 168 (548)
+.++|+.+|..|+++++.+= . ++.- ..+++.+.+++.++++.||+.|+.++.++-+-++ ....+.|.+..
T Consensus 101 l~d~N~~iR~~AlR~ls~l~-~-~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~ 170 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLR-V-KELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDI 170 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcC-h-HHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHH
Confidence 88999999999999999882 2 3322 2367899999999999999999999999975543 34667789999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940 169 LIEMLQSPDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 169 L~~ll~~~~~~v~~~a~~~L~~l~~~ 194 (548)
+-.++.+.+|.+..+|..+|..+...
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchh
Confidence 99999999999999999999998654
No 143
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.41 E-value=0.00032 Score=47.54 Aligned_cols=55 Identities=36% Similarity=0.391 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008940 52 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 107 (548)
Q Consensus 52 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l 107 (548)
+.+|..|+++|++++...++.... ....+++.|+.+|+++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999998755554444 4445899999999999999999999999875
No 144
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.34 E-value=0.018 Score=50.69 Aligned_cols=175 Identities=11% Similarity=0.080 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc-----CCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHH
Q 008940 14 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-----TDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLIL 87 (548)
Q Consensus 14 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~ 87 (548)
=.|+..+.-++ .+|+.+..+.++.+--.|-.+|.. +.+..|..++.+++.+... +.+....+...++++..++
T Consensus 97 cnaL~LlQcvA-SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVA-SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHh-cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 35566666667 789999999987776666667753 3478999999999999984 3445566777899999999
Q ss_pred HhccCChHHHHHHHHHHHHhhcCChhHHH------HHHh-cCChHHH-HHhhhcCChHHHHHHHHHHHHhhcCCchhHHH
Q 008940 88 MLRSEDSAIHYEAVGVIGNLVHSSPNIKK------EVLA-AGALQPV-IGLLSSCCSESQREAALLLGQFAATDSDCKVH 159 (548)
Q Consensus 88 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~------~~~~-~g~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 159 (548)
.+..+++..+..|..++..+..++....- .+.. .-.+..+ .++.+.+++.+.+.++++..+|+ +++..+..
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs-dnprar~a 254 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS-DNPRARAA 254 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCHHHHHH
Confidence 99999999999999999999877655422 1111 1123333 34445677888999999999996 55666554
Q ss_pred HHhcCChHH------HHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940 160 IVQRGAVRP------LIEMLQSPDVQLREMSAFALGRLAQ 193 (548)
Q Consensus 160 ~~~~g~v~~------L~~ll~~~~~~v~~~a~~~L~~l~~ 193 (548)
+.. ++|. +-.+++ +|+..+.+-...+.|++.
T Consensus 255 L~~--clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 255 LRS--CLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHh--hCcchhccchHHHHHh-cChhHHHHHHHHHHHhcc
Confidence 432 2221 222222 455666666666666653
No 145
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.34 E-value=0.0057 Score=55.86 Aligned_cols=228 Identities=15% Similarity=0.121 Sum_probs=134.3
Q ss_pred hhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcC-ChHHHHHHhcc--CChHHHHHHHHHHHHhhcCChhHHHHHHh-c
Q 008940 46 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN-ALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLA-A 121 (548)
Q Consensus 46 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~Lv~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~ 121 (548)
+++.-++-.+..|++++.++.. .++.|..+-.++ .-..++.+++. ++..+|..++.+++.++.. +.+.+.+-. .
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~ 234 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence 4444456678889999999987 577766654443 45567777764 3678999999999999754 666544333 3
Q ss_pred CChHHHHHhhhcC-ChHHHHHHHHHHHHhhcCCc-hhHHHHHhcCChHHHHHhhC-C--CCHHHHHHHHHHHHHhhcC--
Q 008940 122 GALQPVIGLLSSC-CSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQ-S--PDVQLREMSAFALGRLAQD-- 194 (548)
Q Consensus 122 g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~-~--~~~~v~~~a~~~L~~l~~~-- 194 (548)
+.+..++++.+.. .+++.+.++.++.|++...+ .......-.|-+.+-++.|. . .|++++...-..=..|..+
T Consensus 235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k 314 (432)
T COG5231 235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK 314 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhh
Confidence 5677777777654 36788999999999997432 33333444453444444443 2 3555544322222221111
Q ss_pred --------------------Ccch---------hhhHhc--CChHHHHHhhcCCChh-HHHHHHHHHHhccc-CCcchHH
Q 008940 195 --------------------MHNQ---------AGIAHN--GGLVPLLKLLDSKNGS-LQHNAAFALYGLAD-NEDNVAD 241 (548)
Q Consensus 195 --------------------~~~~---------~~~~~~--~~l~~L~~ll~~~~~~-v~~~a~~~L~~l~~-~~~~~~~ 241 (548)
+..+ ..+.+. ..+..|..+++..++. ...-||.-+..+.+ .++.
T Consensus 315 ~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~--- 391 (432)
T COG5231 315 KLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI--- 391 (432)
T ss_pred hhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH---
Confidence 1110 111111 1233455555554443 22233444444433 2222
Q ss_pred HHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccC
Q 008940 242 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 308 (548)
Q Consensus 242 ~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~ 308 (548)
...+...|+-+.++.++.+++++++.+|+.++..+..
T Consensus 392 ------------------------------~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 392 ------------------------------NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred ------------------------------HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 2234456678889999999999999999999887654
No 146
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.32 E-value=0.0005 Score=43.21 Aligned_cols=39 Identities=44% Similarity=0.548 Sum_probs=35.9
Q ss_pred hhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhh
Q 008940 28 SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 66 (548)
Q Consensus 28 ~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 66 (548)
++++..+.+.|+++.|+++++++++.++..++++|++++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 447788899999999999999999999999999999987
No 147
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.32 E-value=0.00051 Score=43.19 Aligned_cols=39 Identities=38% Similarity=0.609 Sum_probs=36.1
Q ss_pred cchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhh
Q 008940 70 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 108 (548)
Q Consensus 70 ~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~ 108 (548)
++++..+.+.|+++.|++++.+++.+++..++++|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 457888999999999999999999999999999999996
No 148
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.0088 Score=62.42 Aligned_cols=168 Identities=15% Similarity=0.161 Sum_probs=129.4
Q ss_pred hccCCHHHHHHHHH-HHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChH
Q 008940 47 LEFTDTKVQRAAAG-ALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 125 (548)
Q Consensus 47 l~~~~~~v~~~a~~-~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 125 (548)
+.+.+...+..|++ ++..++.|++ + .-..+.+++...+.|.++++..-.-|.+.+...|+..-. +++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-----m--ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-----M--SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-----h--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHH
Confidence 67777777877776 6677776533 1 114556677777889999999999999998887753222 467
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcC
Q 008940 126 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 205 (548)
Q Consensus 126 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 205 (548)
.+.+=++++++.+|..|.++++.+= .++. -..+++++.+++.++++.||..|+-|+..+-+-+ +....+.|
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~--~~el-----~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g 166 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLR--VKEL-----LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELG 166 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcC--hHHH-----HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--Hhhhhccc
Confidence 8888889999999999999988872 1221 1247789999999999999999999999997543 34455667
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHhcccC
Q 008940 206 GLVPLLKLLDSKNGSLQHNAAFALYGLADN 235 (548)
Q Consensus 206 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 235 (548)
.+..+..++.+.+|.+..+|+.+|..+...
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 788888999999999999999999988654
No 149
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.23 E-value=0.00094 Score=61.63 Aligned_cols=87 Identities=18% Similarity=0.291 Sum_probs=73.9
Q ss_pred eEEEchHHHHhcccHHHHhhhcC---CCCCCCCCceecC-CCCHHHHHHHHHHHhcCccccchHhHHHHHHHHHHhChHh
Q 008940 390 RRFYAHRICLLASSDAFRAMFDG---GYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEG 465 (548)
Q Consensus 390 ~~~~~h~~il~~~s~~f~~~~~~---~~~e~~~~~i~l~-~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~~a~~~~~~~ 465 (548)
+.|.|.+.+|-..=.||+..+.. +-.+.. +|+|. ..+-.+|+=+++|++.....++++|+..++.-|+|++|+.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~--~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWE--EIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCC--CcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH
Confidence 68999999999999999999965 223333 34443 4688899999999999888999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 008940 466 LKRLCEYTIAQDI 478 (548)
Q Consensus 466 l~~~c~~~l~~~l 478 (548)
|++.|-.|+.+++
T Consensus 92 Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 92 LVEECLQYCHDHM 104 (317)
T ss_pred HHHHHHHHHHHhH
Confidence 9999999986653
No 150
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.16 E-value=0.002 Score=50.37 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=55.7
Q ss_pred CCeEEEchHHHHhcccHHHHhhhcCCCCCC-CCCceecCCCCHHHHHHHHHHHhcCccc-------------------cc
Q 008940 388 EGRRFYAHRICLLASSDAFRAMFDGGYREK-DARDIEIPNIRWEVFELMMRFIYTGSVD-------------------VT 447 (548)
Q Consensus 388 ~~~~~~~h~~il~~~s~~f~~~~~~~~~e~-~~~~i~l~~~~~~~~~~~l~~~Yt~~~~-------------------~~ 447 (548)
+|..|.+.+.+. ..|..++.|+.+...+. ....|++++++..+++.+++|++.-.-. ++
T Consensus 10 Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d 88 (104)
T smart00512 10 DGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKID 88 (104)
T ss_pred CCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCC
Confidence 688999999976 48999999997543222 2258999999999999999999643211 34
Q ss_pred hHhHHHHHHHHHHhCh
Q 008940 448 LDIAQDLLRAADQYLL 463 (548)
Q Consensus 448 ~~~~~~ll~~a~~~~~ 463 (548)
.+.+.+|+.||+++++
T Consensus 89 ~~~l~dLl~AAnyL~I 104 (104)
T smart00512 89 QETLFELILAANYLDI 104 (104)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 4567777777777764
No 151
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=97.13 E-value=0.012 Score=57.42 Aligned_cols=215 Identities=10% Similarity=0.132 Sum_probs=133.2
Q ss_pred HHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccC-cchhhHhhh-cCChHHHHHHhccC
Q 008940 15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVE-CNALPTLILMLRSE 92 (548)
Q Consensus 15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~-~g~i~~Lv~ll~~~ 92 (548)
+|.+.|-.+....+..-..+.+.||+..++..++.+-...+.. .-...-..+. ++.+..... ..+. ..
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~--------~~ 72 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSIS--------YQ 72 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCcccccccccccC--------HH
Confidence 5777888888777777788899999999999987543322221 0000001000 111111111 0000 00
Q ss_pred ChHHHHHHHHHHHHhhc---CChhHHHHHHh-cCChHHHHHhhhcC---ChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940 93 DSAIHYEAVGVIGNLVH---SSPNIKKEVLA-AGALQPVIGLLSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGA 165 (548)
Q Consensus 93 ~~~v~~~a~~~L~~l~~---~~~~~~~~~~~-~g~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 165 (548)
...+.+..++++..+.. +....-+-+++ ...+..|..++++. .+.+...|+..+..+....|-....+.+.|+
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl 152 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence 11222333344444433 11222222333 44566666677664 3778899999999999888888889999999
Q ss_pred hHHHHHhhC-C---CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC-------hhHHHHHHHHHHhccc
Q 008940 166 VRPLIEMLQ-S---PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN-------GSLQHNAAFALYGLAD 234 (548)
Q Consensus 166 v~~L~~ll~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~~v~~~a~~~L~~l~~ 234 (548)
++.+++.+. . ++.++....-.+|+.+|-+......+.+.+.++.+++++.+++ .+........+-.|.+
T Consensus 153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~R 232 (379)
T PF06025_consen 153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMR 232 (379)
T ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHc
Confidence 999999998 4 4667888888999999999999999999999999998886543 1222333345555666
Q ss_pred CCcch
Q 008940 235 NEDNV 239 (548)
Q Consensus 235 ~~~~~ 239 (548)
+....
T Consensus 233 H~p~L 237 (379)
T PF06025_consen 233 HHPSL 237 (379)
T ss_pred cCHHH
Confidence 54433
No 152
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.12 E-value=0.018 Score=47.78 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=100.8
Q ss_pred HHHHhcCCchHHHHhhccCC------HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC--ChHHHHHHHHH
Q 008940 32 TRVRMEGGIPPLVELLEFTD------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGV 103 (548)
Q Consensus 32 ~~i~~~g~i~~L~~ll~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~--~~~v~~~a~~~ 103 (548)
..+++.||+..|+++++++. .+....++.++..|-+++ ..-........+..++..++.. +..+...|+.+
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 34777899999999998766 377788899999998753 3333455555788888888743 68899999999
Q ss_pred HHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhH
Q 008940 104 IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 157 (548)
Q Consensus 104 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 157 (548)
|-++...++.....+.++=.++.|+..|+..+++++.++...+-.|....++.+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence 999999988888888888889999999999999999999988887775544433
No 153
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.11 E-value=0.056 Score=48.77 Aligned_cols=222 Identities=14% Similarity=0.159 Sum_probs=138.5
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhc-CCchHHHH-hhc------cCC--H---HHHHHHHHHHHHhhccCcchhh
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVE-LLE------FTD--T---KVQRAAAGALRTLAFKNDENKN 74 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~-ll~------~~~--~---~v~~~a~~~L~~l~~~~~~~~~ 74 (548)
.+|+.++.|+..|+.--...++..-.+-.. |.+..|++ ... .+. . .-...|+..+..+++ +++.+.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence 357888888877766654445554444433 54555544 222 221 2 233455566666776 799999
Q ss_pred HhhhcCChHHHHHHhccC-----ChHHHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHH
Q 008940 75 QIVECNALPTLILMLRSE-----DSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 148 (548)
Q Consensus 75 ~~~~~g~i~~Lv~ll~~~-----~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~ 148 (548)
.+.+.++.-.|.++|+.. .+.+|..++++++.+...+ ++.-..+...+++|..++.++.+++-.+..|..++..
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999743 3578899999999998643 4556777788999999999999888888888888888
Q ss_pred hhcCCchhH------HHH-HhcCChHHH-HHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHH-HH----Hhhc
Q 008940 149 FAATDSDCK------VHI-VQRGAVRPL-IEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LL----KLLD 215 (548)
Q Consensus 149 l~~~~~~~~------~~~-~~~g~v~~L-~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~-L~----~ll~ 215 (548)
+..++.... ..+ .-..++..+ ..+.+.+++.+.++..+|-..|+.++..+..+.. .+|. |- .-+-
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~--~LP~~Lrd~~f~~~l 243 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ--CLPDQLRDGTFSNIL 243 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH--HS-GGGTSSTTTTGG
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH--hCcHHHhcHHHHHHH
Confidence 775532111 111 111233333 3344567889999999999999999988876654 2222 11 1111
Q ss_pred CCChhHHHHHHHHHHhc
Q 008940 216 SKNGSLQHNAAFALYGL 232 (548)
Q Consensus 216 ~~~~~v~~~a~~~L~~l 232 (548)
.+|+.+++.-...+.|+
T Consensus 244 ~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 244 KDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp CS-HHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 23566666555555554
No 154
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.10 E-value=0.0063 Score=65.19 Aligned_cols=248 Identities=15% Similarity=0.098 Sum_probs=150.1
Q ss_pred CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCC---hhHHHHHHhcCChHHH
Q 008940 51 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS---PNIKKEVLAAGALQPV 127 (548)
Q Consensus 51 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L 127 (548)
..+.+..|+..|..++....+ +... .-++|.++.++.++..+||..|+.+|..+...- +..-..+..+-++|.|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~d--e~~L-DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDD--EVKL-DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcch--HHHH-hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 367788999999999863111 1111 237999999999999999999999998885322 2222344555678999
Q ss_pred HHhhhcCC-hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCC
Q 008940 128 IGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGG 206 (548)
Q Consensus 128 ~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 206 (548)
-.++.+.+ ..++..-+..|..|+.. ...+.+.+.-.....++.+.+.+ ...+.-. .....++.. +.
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~t----A~rFle~~q~~~~~g~~n~~nse-------t~~~~~~-~~~~~~L~~-~V 579 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKT----AYRFLELTQELRQAGMLNDPNSE-------TAPEQNY-NTELQALHH-TV 579 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHH----HHHHHHHHHHHHhcccccCcccc-------ccccccc-chHHHHHHH-HH
Confidence 99998844 44565556677777622 11111111111111112232222 0000000 001111211 12
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHH
Q 008940 207 LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY 286 (548)
Q Consensus 207 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 286 (548)
-.....++.++++.|++.-+..|..||.--.- +..+.-++.+|+.
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk-----------------------------------~ksND~iLshLiT 624 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGK-----------------------------------EKSNDVILSHLIT 624 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh-----------------------------------cccccchHHHHHH
Confidence 23355677777778888777777777741100 0011226889999
Q ss_pred HHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 287 LMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 287 ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
+|.+.|+..|.+--..|..++.--..| -+++..+|.|.+-+.++.+-|...|..++.-|++..
T Consensus 625 fLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 625 FLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred HhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence 999999998887777766554322222 245677899999999999999999999888888764
No 155
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.06 E-value=0.19 Score=44.63 Aligned_cols=195 Identities=13% Similarity=0.160 Sum_probs=130.3
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhc-CCchHHHH-hhc------c-----CCHHHHHHHHHHHHHhhccCcchh
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVE-LLE------F-----TDTKVQRAAAGALRTLAFKNDENK 73 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~-ll~------~-----~~~~v~~~a~~~L~~l~~~~~~~~ 73 (548)
-++|..++.|+.-|..--+..++....+-.. |....|++ .+. . ..+.-...|+..|.-+++ .++.+
T Consensus 35 l~~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvAS-HpdTr 113 (293)
T KOG3036|consen 35 LVSPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVAS-HPDTR 113 (293)
T ss_pred hhCCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhc-CcchH
Confidence 3456667777766665554334443333332 33333333 221 1 122334566666777776 69999
Q ss_pred hHhhhcCChHHHHHHhcc-----CChHHHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHH
Q 008940 74 NQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 147 (548)
Q Consensus 74 ~~~~~~g~i~~Lv~ll~~-----~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 147 (548)
..+.+..+--.|-.+|.. +.+-+|..++.+++.+...+ .+.-..+...+++|..++.+..+++..+..|..++.
T Consensus 114 ~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlq 193 (293)
T KOG3036|consen 114 RAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQ 193 (293)
T ss_pred HHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHH
Confidence 999999888888888863 45778999999999998654 345566677899999999999999988999999998
Q ss_pred HhhcCCchhHH------HHHh-cCChH-HHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhH
Q 008940 148 QFAATDSDCKV------HIVQ-RGAVR-PLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA 202 (548)
Q Consensus 148 ~l~~~~~~~~~------~~~~-~g~v~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 202 (548)
.+..++....- .+.. ..++. .+.++.+.+++.+..++.++..+|+.++..+..+.
T Consensus 194 KIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~ 256 (293)
T KOG3036|consen 194 KILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALR 256 (293)
T ss_pred HHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 88765432111 1111 11222 34445566888999999999999998887766554
No 156
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.025 Score=60.20 Aligned_cols=256 Identities=17% Similarity=0.170 Sum_probs=152.2
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCCchhHH
Q 008940 80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKV 158 (548)
Q Consensus 80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~ 158 (548)
++++.|+..+++.+..++--|+..++.++...|.. . ...++...+.++.-.+ +.....++.+|+.++...--...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~--L--ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE--L--ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH--H--HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 46777788888999999999999999998876621 1 1124556666554433 55677889999999854322222
Q ss_pred HHHhcCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhcCCcch--hhhHhcCChHHHHHhhcCCChhHHHHHHHH
Q 008940 159 HIVQRGAVRPLIEMLQS--------PDVQLREMSAFALGRLAQDMHNQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 228 (548)
Q Consensus 159 ~~~~~g~v~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 228 (548)
.+. .++|.++.-+.- ....+|..|+.++|.++...... ..+...=.-..|...+-+.+..+++.|..+
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 221 356666666542 24579999999999998654432 222111111123344456778889988888
Q ss_pred HHhcccCCcchHHHHHhcCcccccc-cchhhhhhhHHHHHHHHHHHHh--hhhhhhHHHHHH-HHhhhhhhhhhHHHHhh
Q 008940 229 LYGLADNEDNVADFIRVGGVQKLQD-GEFIVQATKDCVAKTLKRLEEK--IHGRVLNHLLYL-MRVAEKGVQRRVALALA 304 (548)
Q Consensus 229 L~~l~~~~~~~~~~~~~g~i~~L~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~l-l~~~~~~~~~~a~~aL~ 304 (548)
+........+.. .|++.+.. ..|++.....|.......+..- .-..++.+++.- +.+-+..+|+.++++|.
T Consensus 495 lqE~VGR~~n~p-----~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~ 569 (1133)
T KOG1943|consen 495 LQENVGRQGNFP-----HGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALH 569 (1133)
T ss_pred HHHHhccCCCCC-----CchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 876654322210 12232222 3344444445543322222211 123455565554 56679999999999999
Q ss_pred hccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940 305 HLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 349 (548)
Q Consensus 305 ~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 349 (548)
+|+.... .....+.++.|+.-..+++...|.-+..+...+..
T Consensus 570 ~Ls~~~p---k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 570 KLSLTEP---KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHhhH---HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 9875422 12223557777777777777776655555444443
No 157
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.97 E-value=0.017 Score=60.88 Aligned_cols=291 Identities=19% Similarity=0.145 Sum_probs=184.6
Q ss_pred HHHHHHHHHhh-hChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCC
Q 008940 15 RAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 93 (548)
Q Consensus 15 ~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~ 93 (548)
.++.-...++. .+.+....+....++|.+..+..+.+..++...+..+..+.--.+ +..-+ ....+.++..+++.+
T Consensus 374 a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti-~~llp~~~~~l~de~ 450 (759)
T KOG0211|consen 374 AIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTI-SELLPLLIGNLKDED 450 (759)
T ss_pred HhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCc-cccChhhhhhcchhh
Confidence 33333444442 233333444555566777777777788888777776666653222 11111 125667777888889
Q ss_pred hHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhh
Q 008940 94 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 173 (548)
Q Consensus 94 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll 173 (548)
+.++....+.+..+-..++...........+|.+..+-.+....++....+.+..++.... ..+.+...-+.+...+
T Consensus 451 ~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l 527 (759)
T KOG0211|consen 451 PIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWL 527 (759)
T ss_pred HHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhh
Confidence 9999999988776654444444555566678888888877778888888888888874321 2333333445555556
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccc
Q 008940 174 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 253 (548)
Q Consensus 174 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ 253 (548)
.+....+++.|+..+..++..... .-.....++.++....+++-..+...+.++..++.--.
T Consensus 528 ~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g---------------- 589 (759)
T KOG0211|consen 528 PDHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG---------------- 589 (759)
T ss_pred hhhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc----------------
Confidence 666668899999888888855441 11222345666666666556666666666654432100
Q ss_pred cchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCC
Q 008940 254 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTN 333 (548)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~ 333 (548)
+.......++.+..+..+..+++|.+++..|..+...-.. ...+....|.+..+-.+.+
T Consensus 590 -------------------~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~--~~~~~~v~pll~~L~~d~~ 648 (759)
T KOG0211|consen 590 -------------------QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE--SVRDEEVLPLLETLSSDQE 648 (759)
T ss_pred -------------------cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch--HHHHHHHHHHHHHhccCcc
Confidence 0123334678888888889999999999999888543221 1233455677777888889
Q ss_pred CccchhhHHHHHHHhhh
Q 008940 334 PKQQLDGAVALFKLANK 350 (548)
Q Consensus 334 ~~v~~~a~~~L~~l~~~ 350 (548)
.++|..|..+...+...
T Consensus 649 ~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 649 LDVRYRAILAFGSIELS 665 (759)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 99999888877766553
No 158
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.93 E-value=0.013 Score=52.70 Aligned_cols=170 Identities=11% Similarity=0.114 Sum_probs=116.2
Q ss_pred HHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCC-----HHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHH
Q 008940 15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-----TKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILM 88 (548)
Q Consensus 15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~l 88 (548)
.|+..+..++ .+|+.|..+.++.+.-.|-.+|+..+ +.+|..++.+++.+... +++....+.+.++++..++.
T Consensus 69 naLaLlQ~vA-shpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~ 147 (262)
T PF04078_consen 69 NALALLQCVA-SHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI 147 (262)
T ss_dssp HHHHHHHHHH-H-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHH-cChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence 5555666677 68999999999999888888887543 67899999999999973 45566777788999999999
Q ss_pred hccCChHHHHHHHHHHHHhhcCChhHH------HHHHh-cCChHHHHH-hhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940 89 LRSEDSAIHYEAVGVIGNLVHSSPNIK------KEVLA-AGALQPVIG-LLSSCCSESQREAALLLGQFAATDSDCKVHI 160 (548)
Q Consensus 89 l~~~~~~v~~~a~~~L~~l~~~~~~~~------~~~~~-~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 160 (548)
++.+++-.+..|..++..+-.++.... +.+.. ..++..++. +...+++.+.+...++-..|+ +++..+..+
T Consensus 148 me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLs-dnprar~aL 226 (262)
T PF04078_consen 148 MEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLS-DNPRAREAL 226 (262)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHT-TSTTHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHc-cCHHHHHHH
Confidence 999999999999999999987755432 11111 123344443 445677889999999999996 456666655
Q ss_pred HhcCChHHHHHhhC--------CCCHHHHHHHHHHHHHh
Q 008940 161 VQRGAVRPLIEMLQ--------SPDVQLREMSAFALGRL 191 (548)
Q Consensus 161 ~~~g~v~~L~~ll~--------~~~~~v~~~a~~~L~~l 191 (548)
.+ ++|. .|+ .+|+.++.+-...+.|+
T Consensus 227 ~~--~LP~---~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 227 RQ--CLPD---QLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HH--HS-G---GGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HH--hCcH---HHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 43 3332 222 24777777776666665
No 159
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.91 E-value=0.055 Score=47.08 Aligned_cols=91 Identities=21% Similarity=0.223 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCC-hHHHHHH
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNA-LPTLILM 88 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~-i~~Lv~l 88 (548)
|.+|..++.+++.|+...|..-+ ..++.+...|+++++.||..|+.+|..|...+ .+.-.|. +..++.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-----~ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILED-----MIKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----ceeehhhhhHHHHHH
Confidence 67899999999999976655333 56788999999999999999999999998632 1222233 3778889
Q ss_pred hccCChHHHHHHHHHHHHhhcC
Q 008940 89 LRSEDSAIHYEAVGVIGNLVHS 110 (548)
Q Consensus 89 l~~~~~~v~~~a~~~L~~l~~~ 110 (548)
+.+++++++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999765
No 160
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0091 Score=50.01 Aligned_cols=90 Identities=21% Similarity=0.230 Sum_probs=67.8
Q ss_pred CCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccc----------------------
Q 008940 388 EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVD---------------------- 445 (548)
Q Consensus 388 ~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~---------------------- 445 (548)
+|+.|.+-..+.. .|..+++++...--......|+++++++.+|..+++|+|--+-+
T Consensus 13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 5788888777544 77787887753211112258999999999999999999873311
Q ss_pred ---cchHhHHHHHHHHHHhChHhHHHHHHHHHHhcC
Q 008940 446 ---VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 478 (548)
Q Consensus 446 ---~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l 478 (548)
+....+.+++.||++|+++.|..+|+..+...+
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 234578999999999999999999988876544
No 161
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.88 E-value=0.055 Score=48.48 Aligned_cols=169 Identities=23% Similarity=0.252 Sum_probs=106.3
Q ss_pred hcCCchHHHHhhccC--CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChh
Q 008940 36 MEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 113 (548)
Q Consensus 36 ~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~ 113 (548)
....++.|+..+... .+-+|..|..+|+.+.. + +..+.+-+..+++..++++.+..++..+-..+.-
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 345688888888654 48899999999999884 2 3566666666777788888777777766322110
Q ss_pred HH-------HHH-----HhcCChHHHHHhhhcCC-hH-HHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHH
Q 008940 114 IK-------KEV-----LAAGALQPVIGLLSSCC-SE-SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ 179 (548)
Q Consensus 114 ~~-------~~~-----~~~g~i~~L~~ll~~~~-~~-~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~ 179 (548)
-+ ... ...+-+..+-..+.+.+ +. -++.+...|.|+- .+ ..+..+.+-+..++.-
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~E---------eaI~al~~~l~~~Sal 202 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TE---------EAINALIDGLADDSAL 202 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cH---------HHHHHHHHhcccchHH
Confidence 00 000 01112333333333332 22 2334444555541 12 2455666777777888
Q ss_pred HHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcC--CChhHHHHHHHHHHhcccCC
Q 008940 180 LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS--KNGSLQHNAAFALYGLADNE 236 (548)
Q Consensus 180 v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~ 236 (548)
.|..++.++++|-.. ..++.|.+.|.+ .++-++..|+.+|+.++..+
T Consensus 203 frhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~ 251 (289)
T KOG0567|consen 203 FRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADED 251 (289)
T ss_pred HHHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH
Confidence 999999999998533 357778877764 46889999999999998654
No 162
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.85 E-value=0.1 Score=49.99 Aligned_cols=206 Identities=15% Similarity=0.148 Sum_probs=147.3
Q ss_pred HHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhh-H---hhhcCChHHHHHHhc-cCChHHHHHHHHHHHH
Q 008940 32 TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN-Q---IVECNALPTLILMLR-SEDSAIHYEAVGVIGN 106 (548)
Q Consensus 32 ~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~---~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~ 106 (548)
..+...+.+..|+..|..-+.+.|..+.....++.......+. . ......-+.+..++. -+++++-..+...|+.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 3455668888889988888999999999999999875444432 1 111111223333333 2366777777778888
Q ss_pred hhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhc---CChHHHHHhhCCCCHHHHHH
Q 008940 107 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR---GAVRPLIEMLQSPDVQLREM 183 (548)
Q Consensus 107 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---g~v~~L~~ll~~~~~~v~~~ 183 (548)
.+.. +.+.+.+.....+..+.+..+.++-++...|..++..+...++......... ..+...-.++.+++--++..
T Consensus 150 c~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 150 CIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 8766 6667788888889999999999999999999999998776666555555443 35667888899999999999
Q ss_pred HHHHHHHhhcCCcchhh----hHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940 184 SAFALGRLAQDMHNQAG----IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 238 (548)
Q Consensus 184 a~~~L~~l~~~~~~~~~----~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 238 (548)
++..|+.+-.+..+... +.+...+..++.+|++++..++..|-.+.--+..++.-
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 99999999988877543 33445677889999999999999999998888776544
No 163
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.80 E-value=0.0061 Score=46.55 Aligned_cols=92 Identities=15% Similarity=0.090 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC
Q 008940 139 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218 (548)
Q Consensus 139 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~ 218 (548)
++.++.+|...+..-+... .-.-..++++++..+.++++.+|..|+.+|.|++..........-...++.|.+++.+.+
T Consensus 3 R~ggli~Laa~ai~l~~~~-~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDI-SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhH-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3445566666654433332 222246889999999999999999999999999976543322223356777888888999
Q ss_pred hhHHHHHHHHHHhc
Q 008940 219 GSLQHNAAFALYGL 232 (548)
Q Consensus 219 ~~v~~~a~~~L~~l 232 (548)
+.|+..| ..|-++
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 9987554 555444
No 164
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.79 E-value=0.0055 Score=58.23 Aligned_cols=86 Identities=26% Similarity=0.317 Sum_probs=69.8
Q ss_pred cEEEEeCCeEEEchHHHHhccc--HHHHhhhcCCCCCCCCCc--eecCCCCHHHHHHHHHHHhcCccccchHhHHHHHH-
Q 008940 382 DVTFLVEGRRFYAHRICLLASS--DAFRAMFDGGYREKDARD--IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLR- 456 (548)
Q Consensus 382 Dv~~~~~~~~~~~h~~il~~~s--~~f~~~~~~~~~e~~~~~--i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~- 456 (548)
-|.+.|||+.|.-.+.-|+... .+|.+++++.+.-..... |-+ |=+|+.|..+|+|+-||+++++......++.
T Consensus 12 ~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~llhd 90 (465)
T KOG2714|consen 12 RVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASGVFPERLLHD 90 (465)
T ss_pred eEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCccCchhhhhhh
Confidence 4788899999999999887655 799999998876554443 555 4599999999999999999997666555554
Q ss_pred HHHHhChHhHHH
Q 008940 457 AADQYLLEGLKR 468 (548)
Q Consensus 457 ~a~~~~~~~l~~ 468 (548)
-|.||++..+.+
T Consensus 91 EA~fYGl~~llr 102 (465)
T KOG2714|consen 91 EAMFYGLTPLLR 102 (465)
T ss_pred hhhhcCcHHHHH
Confidence 999999999876
No 165
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.77 E-value=0.011 Score=45.15 Aligned_cols=90 Identities=17% Similarity=0.268 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHh--cCChHHHHHhhh
Q 008940 55 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLS 132 (548)
Q Consensus 55 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~ 132 (548)
|..++.+|...+.+-+.......+. ++++++..+.++++++|..|+.+|.+++... +..+.. ..+.+.|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHc
Confidence 4566777777766444443333333 8999999999999999999999999998543 333332 457788888888
Q ss_pred cCChHHHHHHHHHHHHh
Q 008940 133 SCCSESQREAALLLGQF 149 (548)
Q Consensus 133 ~~~~~~~~~a~~~L~~l 149 (548)
+.++.|+..| ..|-++
T Consensus 79 D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRL 94 (97)
T ss_pred CCchhHHHHH-HHHHHH
Confidence 8888876555 555544
No 166
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.70 E-value=0.00096 Score=52.29 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=63.2
Q ss_pred hhhhHHHHHHHH-hhhhhhhhhHHHHhhhccCC-CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940 278 GRVLNHLLYLMR-VAEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 278 ~~~~~~L~~ll~-~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 352 (548)
..++..|+.+|. +.++.+..-||.-|+.++.. |.++..+-+.|+-..+.+|+.+++++||..|..++..+....|
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~w 118 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNNW 118 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS-
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence 458899999994 57888999999999999874 6688888888999999999999999999999999999876544
No 167
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.69 E-value=0.091 Score=45.73 Aligned_cols=93 Identities=17% Similarity=0.253 Sum_probs=74.4
Q ss_pred ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHh
Q 008940 93 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 172 (548)
Q Consensus 93 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l 172 (548)
++.+|..++.+++.|+...+..-+ ..++.+...|.++++.+|+.|+.+|..|...+.- -.+...+..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i----k~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI----KVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce----eehhhhhHHHHHH
Confidence 467899999999999876665433 3688999999999999999999999999754321 1122244778888
Q ss_pred hCCCCHHHHHHHHHHHHHhhcC
Q 008940 173 LQSPDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 173 l~~~~~~v~~~a~~~L~~l~~~ 194 (548)
+.+++++++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999866
No 168
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.076 Score=54.74 Aligned_cols=269 Identities=14% Similarity=0.104 Sum_probs=129.1
Q ss_pred HhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCCh
Q 008940 45 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 124 (548)
Q Consensus 45 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 124 (548)
.++.+....+..+|++++..+...+...... .+..|-.++.++...+|-.|.++|..+|...|..-. -.=
T Consensus 252 s~l~~K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-----~cN 321 (865)
T KOG1078|consen 252 SCLRHKSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-----VCN 321 (865)
T ss_pred HHHhchhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc-----ccc
Confidence 3445566778888888888777532222111 566666777788888888888888888876553200 011
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhc
Q 008940 125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN 204 (548)
Q Consensus 125 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 204 (548)
.-|-.+..+.+..+...|..+|..- +.+.....+.+ -+..++.=+.++..-+...+. ..||...+.+..
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKT--G~e~sv~rLm~--qI~~fv~disDeFKivvvdai---~sLc~~fp~k~~---- 390 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKT--GTESSVDRLMK--QISSFVSDISDEFKIVVVDAI---RSLCLKFPRKHT---- 390 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHh--cchhHHHHHHH--HHHHHHHhccccceEEeHHHH---HHHHhhccHHHH----
Confidence 1233344444444444444443332 33333333332 223333333333222333333 333322222111
Q ss_pred CChHHHHHhhcC-CChhHHHHHHHHHHhccc-CCcchHHHHHhcCcccccccchhhhhhhHHH--HHHHHHHHHh-----
Q 008940 205 GGLVPLLKLLDS-KNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCV--AKTLKRLEEK----- 275 (548)
Q Consensus 205 ~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~--~~~~~~~~~~----- 275 (548)
+.+.-|..+|.. +.-+.+.....++..+.. +++.+.....+- -+. ..+|. ..+...+..+
T Consensus 391 ~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~L-Cef----------IEDce~~~i~~rILhlLG~EgP 459 (865)
T KOG1078|consen 391 VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHL-CEF----------IEDCEFTQIAVRILHLLGKEGP 459 (865)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHH-HHH----------HHhccchHHHHHHHHHHhccCC
Confidence 112222233322 222333333333333322 222111110000 000 00000 0000111111
Q ss_pred ---hhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940 276 ---IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 349 (548)
Q Consensus 276 ---~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 349 (548)
..+..+..+.+...-.+..+|.+|..+|.++....+ .......-.|.+.+.+.+.++|..|...|.++-.
T Consensus 460 ~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~----~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 460 KAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV----VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred CCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC----CccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 112345555555555788899999999999974332 2223456677888899999999999998888873
No 169
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.61 E-value=0.036 Score=45.40 Aligned_cols=163 Identities=13% Similarity=0.102 Sum_probs=100.9
Q ss_pred ccEEEEeCCeEEEchHHHHhcccHHHH-hhhcCCC---CCCCCCceecCCCCHHHHHHHHHHHhcCccccchHhHHHHHH
Q 008940 381 SDVTFLVEGRRFYAHRICLLASSDAFR-AMFDGGY---REKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLR 456 (548)
Q Consensus 381 ~Dv~~~~~~~~~~~h~~il~~~s~~f~-~~~~~~~---~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~ 456 (548)
.=|.+.|||..|...|.-|.--+.-|- .+..... ...++.--.+-|=+|.-|..+|+|+-.|++-++.-.-..+++
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~ 100 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLE 100 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccch
Confidence 347778899999999999988885554 4444332 223333455556799999999999999999988855678999
Q ss_pred HHHHhChHhHHHHHHHHHHhcCCH---hhHHHHHHHHHHcCcHHHHHHHHHHH-HHhHHHhhC-cchhHhchhhcHHHHH
Q 008940 457 AADQYLLEGLKRLCEYTIAQDISL---ENVSSMYELSEAFHAISLRHTCILYI-MEHFDKLST-RPGHSNLIQRIIPEIH 531 (548)
Q Consensus 457 ~a~~~~~~~l~~~c~~~l~~~l~~---~n~~~~~~~a~~~~~~~L~~~~~~~i-~~~~~~~~~-~~~f~~l~~~~~~~~~ 531 (548)
-|.+|+++.|.++..+.+.+.... ..-..+|.. .+.....|...|-..- .+.|.+++. +..+.+--.+-..+..
T Consensus 101 EAefyn~~~li~likd~i~dRd~~~tq~~~k~vyrv-LqcqeeeltqmvStmsDgw~~~qlv~i~ssy~ny~~e~~~E~l 179 (210)
T KOG2715|consen 101 EAEFYNDPSLIQLIKDRIQDRDAMVTQEADKFVYRV-LQCQEEELTQMVSTMSDGWKIEQLVSISSSYPNYGDEKEEEFL 179 (210)
T ss_pred hhhccCChHHHHHHHHHHHHHhhhccccchhHHHHH-HHHHHHHHHHHHhhccccHhHHHHhhccccCCCCCCcchHHHH
Confidence 999999999999998888764321 111112211 1223333433332221 134444432 2233333333455666
Q ss_pred HHHHhhcCCCCCC
Q 008940 532 NYFAKALTKPNPH 544 (548)
Q Consensus 532 ~~l~~~~~~~~~~ 544 (548)
..+++.+.+.++.
T Consensus 180 cvvske~~~~g~~ 192 (210)
T KOG2715|consen 180 CVVSKECHPNGSM 192 (210)
T ss_pred HHHHhhcCCCccc
Confidence 6777766654443
No 170
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.59 E-value=0.16 Score=50.58 Aligned_cols=248 Identities=17% Similarity=0.178 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 89 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll 89 (548)
+-+.-.+++++..++..+ ...... ...+..|-.+|+++....|..|+++|..++...|+. -..++. -+-.++
T Consensus 278 emV~lE~Ar~v~~~~~~n--v~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k-v~vcN~----evEsLI 349 (898)
T COG5240 278 EMVFLEAARAVCALSEEN--VGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK-VSVCNK----EVESLI 349 (898)
T ss_pred hhhhHHHHHHHHHHHHhc--cCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce-eeecCh----hHHHHh
Confidence 456778888888888544 111122 135667888899999999999999999999743332 112111 122334
Q ss_pred ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH--------HHH
Q 008940 90 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV--------HIV 161 (548)
Q Consensus 90 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~--------~~~ 161 (548)
.+.+-.+...|+..|..- +.++.-+.++. .|+.++.=+++.=..+...|++.|+.+. |..+. .+.
T Consensus 350 sd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~SD~FKiI~ida~rsLsl~F---p~k~~s~l~FL~~~L~ 422 (898)
T COG5240 350 SDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDMSDGFKIIAIDALRSLSLLF---PSKKLSYLDFLGSSLL 422 (898)
T ss_pred hcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhhccCceEEeHHHHHHHHhhC---cHHHHHHHHHHHHHHH
Confidence 444555555555444433 22222222222 2333333333322223333333333321 22111 122
Q ss_pred hcCCh-------HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhH-------hcC--------ChHHHHHhhcCCCh
Q 008940 162 QRGAV-------RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA-------HNG--------GLVPLLKLLDSKNG 219 (548)
Q Consensus 162 ~~g~v-------~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-------~~~--------~l~~L~~ll~~~~~ 219 (548)
+.|+. +.+.+.++ .+|+.++.|+..|+....+.+.....+ ++| .+..+.+-+--.+.
T Consensus 423 ~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ 501 (898)
T COG5240 423 QEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENN 501 (898)
T ss_pred hcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhh
Confidence 23332 22222222 345566666666655555444322111 111 01122222222345
Q ss_pred hHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhH
Q 008940 220 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRV 299 (548)
Q Consensus 220 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a 299 (548)
.++..|+.+|..++-+.... .....+...|-.++.+.|.++|..|
T Consensus 502 ivRsaAv~aLskf~ln~~d~-----------------------------------~~~~sv~~~lkRclnD~DdeVRdrA 546 (898)
T COG5240 502 IVRSAAVQALSKFALNISDV-----------------------------------VSPQSVENALKRCLNDQDDEVRDRA 546 (898)
T ss_pred HHHHHHHHHHHHhccCcccc-----------------------------------ccHHHHHHHHHHHhhcccHHHHHHH
Confidence 56777777777776543221 0111234445567788889999999
Q ss_pred HHHhhhccC
Q 008940 300 ALALAHLCS 308 (548)
Q Consensus 300 ~~aL~~l~~ 308 (548)
..+|.++-.
T Consensus 547 sf~l~~~~~ 555 (898)
T COG5240 547 SFLLRNMRL 555 (898)
T ss_pred HHHHHhhhh
Confidence 998888753
No 171
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.0037 Score=68.38 Aligned_cols=263 Identities=15% Similarity=0.119 Sum_probs=149.5
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhh-cCChHHHHHHhccCChHHHHHHHHHHHHhhc-CChhHHHHHH
Q 008940 42 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVH-SSPNIKKEVL 119 (548)
Q Consensus 42 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~ 119 (548)
.|..++.++++..|..++.-|..+..+-...+..... ..+...+.++|.+.|+-+|..|.+-|+-+-. ++...++.+
T Consensus 822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~L- 900 (1702)
T KOG0915|consen 822 LLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSL- 900 (1702)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHH-
Confidence 3445556788888887766555555432323332222 2466888999998888888888777665422 112333333
Q ss_pred hcCChHHHHHhhhcC---------ChHHH-------------HHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCC-
Q 008940 120 AAGALQPVIGLLSSC---------CSESQ-------------REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP- 176 (548)
Q Consensus 120 ~~g~i~~L~~ll~~~---------~~~~~-------------~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~- 176 (548)
+..|+.-|..+ +.++. -..-.=|++|+++ +.+...+=.++++.+++
T Consensus 901 ----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd-------l~qPdLVYKFM~LAnh~A 969 (1702)
T KOG0915|consen 901 ----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD-------LGQPDLVYKFMQLANHNA 969 (1702)
T ss_pred ----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh-------cCChHHHHHHHHHhhhhc
Confidence 33444333221 11111 1112234555543 12223445577777663
Q ss_pred CHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccch
Q 008940 177 DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF 256 (548)
Q Consensus 177 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~ 256 (548)
...-+.-|+..++.++.....+.+-.--..+|.|.++--+++..|+..-..+-..|..++...-
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v---------------- 1033 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV---------------- 1033 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH----------------
Confidence 4456777888888887655332221222356777777778888887655554445555432211
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec-CCchHHHHHhhcCCCCc
Q 008940 257 IVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPK 335 (548)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~ 335 (548)
...-..++..|+.-|.+..+.+|+++|.||..|..+++.-+..-. ...+..+++.+++=.+.
T Consensus 1034 -----------------d~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEs 1096 (1702)
T KOG0915|consen 1034 -----------------DEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKES 1096 (1702)
T ss_pred -----------------HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112234677788888889999999999999999988664321100 13455566666666667
Q ss_pred cchhhHHHHHHHhh
Q 008940 336 QQLDGAVALFKLAN 349 (548)
Q Consensus 336 v~~~a~~~L~~l~~ 349 (548)
||.+|-.+...++.
T Consensus 1097 VR~aa~~~~~~lsK 1110 (1702)
T KOG0915|consen 1097 VREAADKAARALSK 1110 (1702)
T ss_pred HHHHHHHHHHHHHH
Confidence 77765544444443
No 172
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.55 E-value=0.038 Score=52.91 Aligned_cols=204 Identities=14% Similarity=0.116 Sum_probs=145.1
Q ss_pred HHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH-----HHHhcCChHHHHHhhCC-CCHHHHHHHHHHHH
Q 008940 116 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-----HIVQRGAVRPLIEMLQS-PDVQLREMSAFALG 189 (548)
Q Consensus 116 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~ 189 (548)
..+...+.+..|+..|..-+-+.++.++.+..++.......+. .+.. ..-+.+..++.. +++++...+...|.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHH
Confidence 4556678899999999999999999999999999876544422 2221 212223333322 46678888888899
Q ss_pred HhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhc-ccCCcchHHHHHhcCcccccccchhhhhhhHHHHHH
Q 008940 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT 268 (548)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l-~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~ 268 (548)
.++........+.....+..+.+....++-++...|..++..+ ..++.....+....
T Consensus 149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n---------------------- 206 (335)
T PF08569_consen 149 ECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNN---------------------- 206 (335)
T ss_dssp HHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT----------------------
T ss_pred HHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHH----------------------
Confidence 9988877777788888888899999999999999999999886 45555444443221
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccc----eeeecCCchHHHHHhhcCCCCccchhhHHHH
Q 008940 269 LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR----TIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 344 (548)
Q Consensus 269 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 344 (548)
-..++...-.+|.+++.-+|..++..|+.+..++.+. +.+-+..-+..+..+|+++...+|..|..++
T Consensus 207 --------~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvF 278 (335)
T PF08569_consen 207 --------YDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVF 278 (335)
T ss_dssp --------HHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 1235667778899999999999999999998776654 4555556688899999999999999998877
Q ss_pred HHHhhh
Q 008940 345 FKLANK 350 (548)
Q Consensus 345 ~~l~~~ 350 (548)
--..-+
T Consensus 279 KvFVAN 284 (335)
T PF08569_consen 279 KVFVAN 284 (335)
T ss_dssp HHHHH-
T ss_pred HHHHhC
Confidence 666554
No 173
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.54 E-value=0.047 Score=45.42 Aligned_cols=124 Identities=13% Similarity=0.168 Sum_probs=96.3
Q ss_pred hhHhhhcCChHHHHHHhccCC------hHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC--ChHHHHHHHH
Q 008940 73 KNQIVECNALPTLILMLRSED------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAAL 144 (548)
Q Consensus 73 ~~~~~~~g~i~~Lv~ll~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~ 144 (548)
+..+++.||+..|++++.++. .++...++.++..|..++ ..-........|..++.+.... +..+.+.+..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 456778899999999998765 367788888888886553 2233445556777888887654 4778899999
Q ss_pred HHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940 145 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 197 (548)
Q Consensus 145 ~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 197 (548)
.|-++...++.....+.+.=-++.|+..|+.++++++..+...+-.|....+.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999987776666676667789999999999999999999988888755543
No 174
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.15 Score=52.36 Aligned_cols=244 Identities=16% Similarity=0.172 Sum_probs=145.1
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 89 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll 89 (548)
+..+--....+...|..+|.-+... +..+..+|.+.++.++.+|+..|..++. +|..... ....+++++
T Consensus 220 ~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~-----Aa~~~i~l~ 288 (948)
T KOG1058|consen 220 DSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKA-----AASTYIDLL 288 (948)
T ss_pred HHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHH-----HHHHHHHHH
Confidence 3445555566666665555544433 4567788888888899999888888885 4444333 234555555
Q ss_pred c-cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCch-hHHHHHhcCChH
Q 008940 90 R-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD-CKVHIVQRGAVR 167 (548)
Q Consensus 90 ~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~v~ 167 (548)
. .++..++.....-|..+...+.. +-.|.+-.++.+|++++-++++.+......|.+...- ....+.+..++.
T Consensus 289 ~kesdnnvklIvldrl~~l~~~~~~-----il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~k 363 (948)
T KOG1058|consen 289 VKESDNNVKLIVLDRLSELKALHEK-----ILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMK 363 (948)
T ss_pred HhccCcchhhhhHHHHHHHhhhhHH-----HHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHh
Confidence 4 34566777777667666522221 1234666788899999999999999887777654221 111111111111
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcC
Q 008940 168 PLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 247 (548)
Q Consensus 168 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~ 247 (548)
.--. =.+++...|..-..++..++...+.- .+..++.+++.+.+.++......+..+......-++.
T Consensus 364 T~~~-e~d~~~~yRqlLiktih~cav~Fp~~----aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L-------- 430 (948)
T KOG1058|consen 364 THNE-ESDDNGKYRQLLIKTIHACAVKFPEV----AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL-------- 430 (948)
T ss_pred cccc-ccccchHHHHHHHHHHHHHhhcChHH----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH--------
Confidence 1000 01234467888888898888654432 2346788999998888765555544444433221111
Q ss_pred cccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCCCc
Q 008940 248 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDD 311 (548)
Q Consensus 248 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~ 311 (548)
...++..|+.-+.. .+..+-..|+|.++..|.+..
T Consensus 431 -----------------------------r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 431 -----------------------------RASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred -----------------------------HHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 11245555555544 667778888999988876543
No 175
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.038 Score=53.89 Aligned_cols=263 Identities=16% Similarity=0.066 Sum_probs=135.1
Q ss_pred cCChHHHHHHh----ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc
Q 008940 79 CNALPTLILML----RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 154 (548)
Q Consensus 79 ~g~i~~Lv~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 154 (548)
.|.+..++..+ .+++..++..|++.|++.++..|+-.......-....+-.+....+.+|...+..+|..+..
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~--- 329 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLE--- 329 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH---
Confidence 35555554444 37788999999999999998866544443333223333444555668888888888877752
Q ss_pred hhHHHHHhcC---ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch--hhhHh--cCChHHHHHhhcCCChhHHHHHHH
Q 008940 155 DCKVHIVQRG---AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ--AGIAH--NGGLVPLLKLLDSKNGSLQHNAAF 227 (548)
Q Consensus 155 ~~~~~~~~~g---~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~--~~~l~~L~~ll~~~~~~v~~~a~~ 227 (548)
.....-+..+ +.-.+..+..+.++++|..+...++.|+...... ..+.+ .+...+++-.+.++++.+. .||.
T Consensus 330 ~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr 408 (533)
T KOG2032|consen 330 KASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACR 408 (533)
T ss_pred hhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHH
Confidence 2222222223 3334666678889999999999999988655442 22221 1334445555666777653 5666
Q ss_pred HHHhcccCCcchHHHHHhcCcccccccch-hhh--hhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhh
Q 008940 228 ALYGLADNEDNVADFIRVGGVQKLQDGEF-IVQ--ATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA 304 (548)
Q Consensus 228 ~L~~l~~~~~~~~~~~~~g~i~~L~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~ 304 (548)
.....+...-.++.. .+.++...+... ..+ ...-|.... .+..-+-.-.......++.+.-+.+|..+..--.
T Consensus 409 ~~~~~c~p~l~rke~--~~~~q~~ld~~~~~~q~Fyn~~c~~L~--~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~ 484 (533)
T KOG2032|consen 409 SELRTCYPNLVRKEL--YHLFQESLDTDMARFQAFYNQWCIQLN--HIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTT 484 (533)
T ss_pred HHHHhcCchhHHHHH--HHHHhhhhHHhHHHHHHHHHHHHHHHh--hhCHHHHHHHHHhchhheecchHHHHHHHHHHHH
Confidence 666665432222222 111121111000 000 000011000 0000000001111112222233455665555544
Q ss_pred hccCCCc--cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940 305 HLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 349 (548)
Q Consensus 305 ~l~~~~~--~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 349 (548)
++..+-. .+...-.......|..+..++-++++..|..++..+..
T Consensus 485 ~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 485 RSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 4443211 11111112234566667788899999999998887754
No 176
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.46 E-value=0.11 Score=53.94 Aligned_cols=201 Identities=17% Similarity=0.161 Sum_probs=142.8
Q ss_pred ChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHH-HhhccCcchhhHhhhcCChHHHHHHhccC-ChHHHHHHHHHH
Q 008940 27 NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR-TLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVI 104 (548)
Q Consensus 27 ~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~~v~~~a~~~L 104 (548)
...-+...+..|+...|+++...+.+..+.....+|. .+...... ....++.+...+... ...-...++.++
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 3445566777899999999999888888888888887 33221111 112344444444322 222345688999
Q ss_pred HHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh-cCChHHHHHhhCCCCHHHHHH
Q 008940 105 GNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREM 183 (548)
Q Consensus 105 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~L~~ll~~~~~~v~~~ 183 (548)
.||++.+...|+.+.+.-.++.+-.++...++..++.++..+.||..+.--....+++ ...++.....+...+......
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 9999988888888988888888888888889999999999999998664444445555 445666666666667777788
Q ss_pred HHHHHHHhhcCCcc-hh-hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940 184 SAFALGRLAQDMHN-QA-GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 233 (548)
Q Consensus 184 a~~~L~~l~~~~~~-~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 233 (548)
+++++..++....+ +. ......+...+..++.+.++.++...+..+.|+.
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF 698 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH
Confidence 88888866655544 23 3444567778889999999999998888877743
No 177
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.44 E-value=0.0051 Score=48.30 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=61.1
Q ss_pred CchHHHHhh-ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhc
Q 008940 39 GIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 109 (548)
Q Consensus 39 ~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~ 109 (548)
.+..|+++| .+.|+.+..-||.=|+.++...|..+..+-+.|+=..++.++.++|++|+..|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 467889999 45578888999999999999889998888889999999999999999999999999987753
No 178
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=96.43 E-value=0.012 Score=50.67 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=67.2
Q ss_pred EEEEeCCeEEEchHHHHhccc--HHHHhhhcCCCC--CCCCCceecCCCCHHHHHHHHHHHhcCccc-cchHhHHHHHHH
Q 008940 383 VTFLVEGRRFYAHRICLLASS--DAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVD-VTLDIAQDLLRA 457 (548)
Q Consensus 383 v~~~~~~~~~~~h~~il~~~s--~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~-~~~~~~~~ll~~ 457 (548)
|.+.++|+.|...+.-+--+- ....+||.+.-. +.+..-..+-|-+|..|+++|.|+-.|.+. .+.-++.++++.
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLee 90 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEE 90 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHH
Confidence 566778877776665555443 357788875422 222333444466999999999999999986 456789999999
Q ss_pred HHHhChHhHHHHHHH
Q 008940 458 ADQYLLEGLKRLCEY 472 (548)
Q Consensus 458 a~~~~~~~l~~~c~~ 472 (548)
|+||++-.|++..+.
T Consensus 91 Arff~i~sL~~hle~ 105 (302)
T KOG1665|consen 91 ARFFQILSLKDHLED 105 (302)
T ss_pred hhHHhhHhHHhHHhh
Confidence 999999999999877
No 179
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.074 Score=54.45 Aligned_cols=134 Identities=19% Similarity=0.178 Sum_probs=90.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHh-hcCCChhHHHHHHHHHHhcccCCcchHHHH
Q 008940 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL-LDSKNGSLQHNAAFALYGLADNEDNVADFI 243 (548)
Q Consensus 165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 243 (548)
.=+.+-+++.+.||-+|.....++.---.... ..+++..|+.. ..+.+++|++.|+.+|+-++..+..
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~----- 588 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTG------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE----- 588 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccC------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh-----
Confidence 33445556677788888776655543211111 12345555555 4567899999999999988754432
Q ss_pred HhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCCCccceeeecCCch
Q 008940 244 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGL 322 (548)
Q Consensus 244 ~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i 322 (548)
.++..+.+|.. -++.||..++.+|+-.|.+...+. ++
T Consensus 589 ------------------------------------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------Ai 626 (929)
T KOG2062|consen 589 ------------------------------------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------AI 626 (929)
T ss_pred ------------------------------------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------HH
Confidence 34555666654 689999999999999888777653 46
Q ss_pred HHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 323 ELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 323 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
..|-.+..++..-||..|+.++.-+.-..
T Consensus 627 ~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 627 NLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred HHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 66777777877788888887777765443
No 180
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.082 Score=54.25 Aligned_cols=289 Identities=17% Similarity=0.158 Sum_probs=138.1
Q ss_pred CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHH---------------
Q 008940 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAV--------------- 101 (548)
Q Consensus 38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~--------------- 101 (548)
..+|.+...|++..+.||+.|+-++..+-.. .+ .+. .++-+.+-.+|. +.|+..++.|.
T Consensus 134 pl~p~IracleHrhsYVRrNAilaifsIyk~-~~---~L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl 208 (948)
T KOG1058|consen 134 PLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FE---HLI-PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYL 208 (948)
T ss_pred hhHHHHHHHHhCcchhhhhhhheeehhHHhh-hh---hhc-CChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHH
Confidence 5667788899999999999999888877652 11 000 112222222222 23333333333
Q ss_pred -------------------HHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008940 102 -------------------GVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ 162 (548)
Q Consensus 102 -------------------~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 162 (548)
..+...+..++.-+ ...|..+..+|.+.++.++..|+.+|.+++.. |.....
T Consensus 209 ~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~--- 279 (948)
T KOG1058|consen 209 LSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKA--- 279 (948)
T ss_pred HhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHH---
Confidence 33333332222221 12355566666666666666666666666422 221111
Q ss_pred cCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc--h
Q 008940 163 RGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN--V 239 (548)
Q Consensus 163 ~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~ 239 (548)
....+++++-. ++-.++...+--|..+. .....+ -.|.+-.++++|.+++-+++..++.....|+..... .
T Consensus 280 --Aa~~~i~l~~kesdnnvklIvldrl~~l~---~~~~~i-l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvedi 353 (948)
T KOG1058|consen 280 --AASTYIDLLVKESDNNVKLIVLDRLSELK---ALHEKI-LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDI 353 (948)
T ss_pred --HHHHHHHHHHhccCcchhhhhHHHHHHHh---hhhHHH-HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHH
Confidence 22333444322 22233333333333333 111111 124455578888999999999999988888754432 1
Q ss_pred HHHHHhcCcccccccchhhhhhhHHHHHHHHHHHH---hhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccC-CCcccee
Q 008940 240 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE---KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTI 315 (548)
Q Consensus 240 ~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~-~~~~~~~ 315 (548)
..+.+..+...--......+.-.....+++..... -..+.+++.|+..+.+.++..-...+..+..... .|..|
T Consensus 354 v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-- 431 (948)
T KOG1058|consen 354 VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-- 431 (948)
T ss_pred HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH--
Confidence 22211111110000000000000111111111111 1234577888888877666544444444333332 23333
Q ss_pred eecCCchHHHHHhhc-CCCCccchhhHHHHHHHhhhc
Q 008940 316 FIDGGGLELLLGLLG-STNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 316 ~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~ 351 (548)
...+..|++-+. -...++-+.|+|.++.-+...
T Consensus 432 ---~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 432 ---ASIIEKLLETFPQIRSSKICRGALWILGEYCEGL 465 (948)
T ss_pred ---HHHHHHHHHhhhhhcccccchhHHHHHHHHHhhh
Confidence 234445554443 245567778889888877654
No 181
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.33 E-value=0.013 Score=40.63 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=41.3
Q ss_pred CCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhc
Q 008940 388 EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 441 (548)
Q Consensus 388 ~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt 441 (548)
||+.|.+.+.+.. .|+.++.|+.+...+.. .|++++++..+++.+++|++.
T Consensus 9 Dg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 9 DGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp TSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred CCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 6899999998766 89999999975433222 799999999999999999863
No 182
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.26 E-value=0.77 Score=49.30 Aligned_cols=216 Identities=15% Similarity=0.148 Sum_probs=134.3
Q ss_pred HHHHhcCCchHHHHhhccC-----CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc----cCC----hHHHH
Q 008940 32 TRVRMEGGIPPLVELLEFT-----DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----SED----SAIHY 98 (548)
Q Consensus 32 ~~i~~~g~i~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~----~~~----~~v~~ 98 (548)
..+.+.||+..+++++.+- ........+..|...+. -+.||+.+.+.|+++.|+..+. .+. ..+-+
T Consensus 111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 4566789999999999752 34555566777777776 6999999999999999998775 333 57777
Q ss_pred HHHHHHHHhhcCChhHHHHH----HhcC--------ChHHHHHhhhc----CChHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008940 99 EAVGVIGNLVHSSPNIKKEV----LAAG--------ALQPVIGLLSS----CCSESQREAALLLGQFAATDSDCKVHIVQ 162 (548)
Q Consensus 99 ~a~~~L~~l~~~~~~~~~~~----~~~g--------~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 162 (548)
..+.++..+........... .... -+..+++.+.+ .++.+....+++|..|+.++++....+++
T Consensus 190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 77777777754322110000 1111 25566666654 35778899999999999888776665554
Q ss_pred cCChHHHHHhh--CCC-CHHHHHHHHHHHHHhhcC----C---cchhhhHhcCChHHHHHhhcCCC--------hh----
Q 008940 163 RGAVRPLIEML--QSP-DVQLREMSAFALGRLAQD----M---HNQAGIAHNGGLVPLLKLLDSKN--------GS---- 220 (548)
Q Consensus 163 ~g~v~~L~~ll--~~~-~~~v~~~a~~~L~~l~~~----~---~~~~~~~~~~~l~~L~~ll~~~~--------~~---- 220 (548)
.+.+.+++= ... .++- ...+.+++.++.. . .-+..+.+.|.+...+++|...- ++
T Consensus 270 --~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~ 346 (802)
T PF13764_consen 270 --HFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEF 346 (802)
T ss_pred --HHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHH
Confidence 122222211 111 1111 2235555555532 2 12567788888888887775321 11
Q ss_pred ----HHHHHHHHHHhcccCCcchHHHHHhcCcccc
Q 008940 221 ----LQHNAAFALYGLADNEDNVADFIRVGGVQKL 251 (548)
Q Consensus 221 ----v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L 251 (548)
....++..|..|+......+..+..++++.+
T Consensus 347 l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~l 381 (802)
T PF13764_consen 347 LSRPSLPYILRLLRGLARGHEPTQLLIAEQLLPLL 381 (802)
T ss_pred hcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHH
Confidence 2345778888888877666666666666544
No 183
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.24 E-value=0.045 Score=47.74 Aligned_cols=114 Identities=13% Similarity=0.115 Sum_probs=82.2
Q ss_pred ccCChHHHHHHHHHHHHhhcCChhHHHHHH---------------hcCChHHHHHhhhc------CChHHHHHHHHHHHH
Q 008940 90 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVL---------------AAGALQPVIGLLSS------CCSESQREAALLLGQ 148 (548)
Q Consensus 90 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~---------------~~g~i~~L~~ll~~------~~~~~~~~a~~~L~~ 148 (548)
.+++......++.+|.|++.....++..+- ....+..|+.++.. ....-....+..|.|
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 345666777888999999877555432222 12256777777755 224466788899999
Q ss_pred hhcCCchhHHHHHhc--CC--hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhc
Q 008940 149 FAATDSDCKVHIVQR--GA--VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN 204 (548)
Q Consensus 149 l~~~~~~~~~~~~~~--g~--v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 204 (548)
+++. +..|..+.+. +. +..|+....+.+..-|.-++.+|.|+|.+.+....+...
T Consensus 85 lS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~ 143 (192)
T PF04063_consen 85 LSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD 143 (192)
T ss_pred hcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence 9755 7888888764 34 778888888887777789999999999988877666653
No 184
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.22 E-value=0.24 Score=47.20 Aligned_cols=150 Identities=19% Similarity=0.157 Sum_probs=97.9
Q ss_pred CChHHHH-HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc-hhH
Q 008940 80 NALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCK 157 (548)
Q Consensus 80 g~i~~Lv-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~ 157 (548)
+.++.|+ +.+.++++.+|+.++.+|+-.+.-+.+.... .++.+.+.++.+++.++..|+.++..+..... ...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 3454444 7888899999999999999998766544322 46678888877788999999999988774322 111
Q ss_pred HH-------HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHH-hhc---CCChhHHHHHH
Q 008940 158 VH-------IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK-LLD---SKNGSLQHNAA 226 (548)
Q Consensus 158 ~~-------~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-ll~---~~~~~v~~~a~ 226 (548)
.. .....+++.+...+.+.+++++..++..++.|........ ....+..|+- +.+ ..+..++..-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 11 1123567788888888999999999999999875543322 0122333322 222 22355655555
Q ss_pred HHHHhcccCCc
Q 008940 227 FALYGLADNED 237 (548)
Q Consensus 227 ~~L~~l~~~~~ 237 (548)
..+-.++....
T Consensus 178 ~Ffp~y~~s~~ 188 (298)
T PF12719_consen 178 VFFPVYASSSP 188 (298)
T ss_pred HHHHHHHcCCH
Confidence 56666665443
No 185
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.21 E-value=0.16 Score=49.45 Aligned_cols=175 Identities=13% Similarity=0.084 Sum_probs=104.7
Q ss_pred hhHHHHHHHHHHHHHhhhChhh-HHHHHhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSI-KTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
.-+-+..|+.-|..+...+... -.... ..++..+++.|.+ .++..+..|++.|..++...+..-..-. +-.+..++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Dst-E~ai~K~L 377 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDST-EIAICKVL 377 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchH-HHHHHHHH
Confidence 3455667777666665443211 11111 1345677888877 7788999999999999984332211111 12455555
Q ss_pred HHhccCChHHHHHHH-HHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940 87 LMLRSEDSAIHYEAV-GVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 165 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~-~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 165 (548)
+.-.+.+.++...|. .++.-+++..|.. .|..+..++...+.+....++..+..++..-+.-.-...-..+
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~di 449 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDI 449 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhh
Confidence 655666555554444 4455566665543 2334455555555555555565666665332211111222468
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940 166 VRPLIEMLQSPDVQLREMSAFALGRLAQ 193 (548)
Q Consensus 166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 193 (548)
.|.+++...+.+..||+.+..||..+..
T Consensus 450 aP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 450 APCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 8889999999999999999999998863
No 186
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.15 E-value=0.081 Score=54.83 Aligned_cols=240 Identities=14% Similarity=0.122 Sum_probs=148.4
Q ss_pred cCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHH-HhhcCChhHHHHHHhcCChHHHHHhhhcCCh-HHHHHHHHH
Q 008940 68 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIG-NLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALL 145 (548)
Q Consensus 68 ~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~ 145 (548)
...+-+...++.|+...|+.+.....+.-+.....+|. .+.. +..+ ....++.+...++.... --...++.+
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f--~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~a 565 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF--PGER----SYEVVKPLDSALHNDEKGLENFEALEA 565 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC--CCCc----hhhhhhhhcchhhhhHHHHHHHHHHHH
Confidence 34566677888999999999998777787777777776 3321 1111 01345555555543321 123557789
Q ss_pred HHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhh-hHh-cCChHHHHHhhcCCChhHHH
Q 008940 146 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG-IAH-NGGLVPLLKLLDSKNGSLQH 223 (548)
Q Consensus 146 L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~-~~~l~~L~~ll~~~~~~v~~ 223 (548)
+.||++.+...+..+.+...++.+-.++..+++..+..++..+.||...+..-.. +.+ ...++.....+.........
T Consensus 566 ltnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 566 LTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred hhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 9999999888888898888888888888889999999999999999987655332 233 34455555555555555666
Q ss_pred HHHHHHHhcccCCcc-hHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHH
Q 008940 224 NAAFALYGLADNEDN-VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA 302 (548)
Q Consensus 224 ~a~~~L~~l~~~~~~-~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~a 302 (548)
.+++++..+....++ +..+.+ -......++.++.+.++++|...+..
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~--------------------------------~~~~~e~~~~~i~~~~~~~qhrgl~~ 693 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILE--------------------------------LLEWLEILVRAIQDEDDEIQHRGLVI 693 (748)
T ss_pred hccccccchhhcchhhhhhHHH--------------------------------hhcchHHHHHhhcCchhhhhhhhhhh
Confidence 666666655443322 221110 11234556677788888899888888
Q ss_pred hhhccCC-CccceeeecCCchHHHHHhhcCCCCccchhhHHHHH
Q 008940 303 LAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 345 (548)
Q Consensus 303 L~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 345 (548)
+.|+... .+....+......+.+..+-.-.-...++.++.+|.
T Consensus 694 ~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 694 ILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKREDAAPCLS 737 (748)
T ss_pred hhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhhhHHH
Confidence 8885432 222233333444444444333333333444444443
No 187
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.11 E-value=0.057 Score=49.06 Aligned_cols=102 Identities=20% Similarity=0.265 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 87 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 87 (548)
.+.....|+++|.-++--+|..+..+.+...+..++.+|.. ..+.++..++.+|..+.-.++.|...+-+.+|+..++.
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 34456678899999998899999999999999999999954 56899999999999888889999999999999999999
Q ss_pred HhccC--ChHHHHHHHHHHHHhhcC
Q 008940 88 MLRSE--DSAIHYEAVGVIGNLVHS 110 (548)
Q Consensus 88 ll~~~--~~~v~~~a~~~L~~l~~~ 110 (548)
++++. +.+++..++..|.-....
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHHcc
Confidence 99854 667888888777666543
No 188
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.05 E-value=0.02 Score=55.36 Aligned_cols=223 Identities=17% Similarity=0.134 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh----ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHH
Q 008940 52 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML----RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 127 (548)
Q Consensus 52 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 127 (548)
+..+..+|.++.++.....++-.. |--.....++ .+++.-++..|.+.++-+.-+..-..+......+...+
T Consensus 363 ~Tl~~s~Cdals~i~~~~f~~lpn----~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~i 438 (728)
T KOG4535|consen 363 PTLQASACDALSSILPEAFSNLPN----DRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAI 438 (728)
T ss_pred CCchhHHHHHHhhcCchhhcCCCC----cchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHH
Confidence 456677777777776421111100 0001111111 12334466677777766655533333333344455566
Q ss_pred HHhhhcCChHHHHHHHHHHHHhhc----CCchhHHHH--HhcCChHHHHHhhC---CCCHHHHHHHHHHHHHhhcCCcch
Q 008940 128 IGLLSSCCSESQREAALLLGQFAA----TDSDCKVHI--VQRGAVRPLIEMLQ---SPDVQLREMSAFALGRLAQDMHNQ 198 (548)
Q Consensus 128 ~~ll~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~--~~~g~v~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~ 198 (548)
...+.++.-..+.++.|+++|++. +.|..+..- ...-.+..++.... .....|+.++.++|+|+.+.-+.-
T Consensus 439 l~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i 518 (728)
T KOG4535|consen 439 LMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPI 518 (728)
T ss_pred HHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHh
Confidence 666666667789999999999872 112211111 11112223333222 135579999999999998543311
Q ss_pred h----hhHhcCChHHHH-HhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHH
Q 008940 199 A----GIAHNGGLVPLL-KLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 273 (548)
Q Consensus 199 ~----~~~~~~~l~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~ 273 (548)
. .....+.+..+. ...-.....|+.++|.+++||-.++...-+ ..
T Consensus 519 ~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq--~~---------------------------- 568 (728)
T KOG4535|consen 519 EKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ--TA---------------------------- 568 (728)
T ss_pred hhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc--CC----------------------------
Confidence 1 111112222211 222245678999999999999887754110 00
Q ss_pred HhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCC
Q 008940 274 EKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSP 309 (548)
Q Consensus 274 ~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~ 309 (548)
-+...+++.|..++.+ .+-.+|.+|+.+|..-...
T Consensus 569 -~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 569 -PWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred -CchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 1223367788888876 8899999999999766543
No 189
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.01 E-value=0.12 Score=54.43 Aligned_cols=190 Identities=12% Similarity=0.074 Sum_probs=123.3
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH--------HHHh----cCChHHHHHhhhcCChHHHHHHHHHHHH
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK--------EVLA----AGALQPVIGLLSSCCSESQREAALLLGQ 148 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~--------~~~~----~g~i~~L~~ll~~~~~~~~~~a~~~L~~ 148 (548)
+...++++|.+ +++-..+..++.-+.++++..+. .+.+ ...+|.+++.....+...+..-..+|.+
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 34456666654 45555666677666666554321 1222 3578899988886666777777888888
Q ss_pred hhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC---hhHHHHH
Q 008940 149 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN---GSLQHNA 225 (548)
Q Consensus 149 l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~v~~~a 225 (548)
+...-|.....---....|.|++.|.-+|..+|..+..++.-+....+.-..-.-.-.++.++.+=.+.+ ..++..|
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~A 973 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDA 973 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHH
Confidence 8765454222112245778888889999999999999999888765544222222234555666555544 5688899
Q ss_pred HHHHHhccc-CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhh
Q 008940 226 AFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA 304 (548)
Q Consensus 226 ~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~ 304 (548)
+.+|..|.+ -+...-. -....++..|.+.|.++..-+|.+|.++=.
T Consensus 974 LqcL~aL~~~~P~~~l~---------------------------------~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 974 LQCLNALTRRLPTKSLL---------------------------------SFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHHhccCCCcccc---------------------------------cccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 999999987 3322111 122347788888888888889999887644
Q ss_pred h
Q 008940 305 H 305 (548)
Q Consensus 305 ~ 305 (548)
+
T Consensus 1021 ~ 1021 (1030)
T KOG1967|consen 1021 N 1021 (1030)
T ss_pred h
Confidence 3
No 190
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.95 E-value=0.078 Score=53.19 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhh-ccCCHHHHHHHHHHHHHhhc----cCcchhhHhhhcCChHH
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAF----KNDENKNQIVECNALPT 84 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~g~i~~ 84 (548)
+..+..+++.++.+...-+... .+ ...+..+...+ ...+...+..++..+.-++. .+... ....+..
T Consensus 204 ~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~-----~~~~~~~ 275 (415)
T PF12460_consen 204 EFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL-----ATELLDK 275 (415)
T ss_pred hHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch-----HHHHHHH
Confidence 5667777888887774311111 00 12222333333 23334444455444433332 11111 1124666
Q ss_pred HHHHhccCChHHHHHHHHHHHHhhcCChhH-------------HHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhc
Q 008940 85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNI-------------KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 151 (548)
Q Consensus 85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 151 (548)
|+.++.+ +++...+++.+.-+..+.++. |+.+.. ..+|.+++..+..+.+.+.....+|..+..
T Consensus 276 L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~ 352 (415)
T PF12460_consen 276 LLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALSHLLK 352 (415)
T ss_pred HHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHHHHHh
Confidence 7777765 778899999999998774432 223322 357888888877777778888889999987
Q ss_pred CCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940 152 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 195 (548)
Q Consensus 152 ~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 195 (548)
+-|.....-.-..++|.+++.|..++++++..++.+|..+..+.
T Consensus 353 ~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 353 NVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 76654433333568999999999999999999999999998776
No 191
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.94 E-value=0.061 Score=45.57 Aligned_cols=147 Identities=20% Similarity=0.184 Sum_probs=99.2
Q ss_pred ChHHHHHHhc--cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940 81 ALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 158 (548)
Q Consensus 81 ~i~~Lv~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 158 (548)
-++.++..|. ...+++|..+.-++..+- +..++... .-+-+.+-..+...+.+-...+..++..+-...++.-.
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~-~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFK-EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHH-HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 3556666665 357789999998888883 32223322 22333444455554555667777888888766665555
Q ss_pred HH-HhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhc-CCChh-HHHHHHHHHHhc
Q 008940 159 HI-VQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGS-LQHNAAFALYGL 232 (548)
Q Consensus 159 ~~-~~~g~v~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~-v~~~a~~~L~~l 232 (548)
.+ ...|+++.+++++. .++..++..++.+|..-|.+...|..+.+ .+++.|-.+.+ ++++. ++..|+-.|..+
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 44 45789999999998 77888999999999988877666655544 77888999996 44555 777777777653
No 192
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.94 E-value=0.9 Score=46.39 Aligned_cols=87 Identities=20% Similarity=0.246 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc
Q 008940 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 91 (548)
Q Consensus 12 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~ 91 (548)
..+-|+..|......-|+.... ++..++.++++++..||..|++.|-.+|.++++.... +++.|+++|.+
T Consensus 38 ~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~QlL~t 107 (556)
T PF05918_consen 38 EKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQLLQT 107 (556)
T ss_dssp HHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHHHHhc
Confidence 3444444444444433333332 2335555555555555555555555555544443333 24455555555
Q ss_pred CChHHHHHHHHHHHHhh
Q 008940 92 EDSAIHYEAVGVIGNLV 108 (548)
Q Consensus 92 ~~~~v~~~a~~~L~~l~ 108 (548)
+++.-...+-.+|..+.
T Consensus 108 dd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 108 DDPVELDAVKNSLMSLL 124 (556)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 55444444444444443
No 193
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.90 E-value=0.14 Score=48.92 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=113.8
Q ss_pred CCchHHH-HhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCCh-hHH
Q 008940 38 GGIPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIK 115 (548)
Q Consensus 38 g~i~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~ 115 (548)
+.+..|+ ..++++++.+|..|+++|+-.+--+.+.... .++.+...+..++..++..|+.++..+..... ..-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4455554 6778899999999999999999755533332 46677777777799999999999998865322 111
Q ss_pred HH-------HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhh-C---CCCHHHHHHH
Q 008940 116 KE-------VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-Q---SPDVQLREMS 184 (548)
Q Consensus 116 ~~-------~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll-~---~~~~~v~~~a 184 (548)
+. ......+..+.+.+.+.+++++..++..++.|...+.-.. ...++..|+-+- . .+++.+++.-
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 11 1223567788888888899999999999999874432211 012333333332 2 2456788877
Q ss_pred HHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC
Q 008940 185 AFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK 217 (548)
Q Consensus 185 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~ 217 (548)
...+-..+..............++.+..+.+..
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 777778887666544555556677776666543
No 194
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.21 Score=52.23 Aligned_cols=182 Identities=17% Similarity=0.138 Sum_probs=120.0
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCC
Q 008940 44 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 123 (548)
Q Consensus 44 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 123 (548)
+..+.++...++-.|+.-|..+.+ +.+....+...+++...++.|++.|+-+-..|++.+..||.-.+ ...
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e-~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~i 803 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIE-KRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDI 803 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhh
Confidence 334456668899999999999997 45777777788999999999999999999899998888865433 357
Q ss_pred hHHHHHhh-hcCC---hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchh
Q 008940 124 LQPVIGLL-SSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 199 (548)
Q Consensus 124 i~~L~~ll-~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 199 (548)
+|.+...- +..+ ++.+-....++.++...-.+.... ...-.+..++.-.++++...|..++..++++|.-...+.
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~-y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFK-YKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHH-HHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 78887743 3221 344444445555554321111111 112456777788888888889999999999995433211
Q ss_pred hhHhcCChHHHHHhhc-CCChhHHHHHHHHHHhcccC
Q 008940 200 GIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADN 235 (548)
Q Consensus 200 ~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~ 235 (548)
.-.-...+..++.+.. ++.+-+++.|+..+..+-..
T Consensus 883 sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 883 SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 1011123334455554 45678889999888887653
No 195
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.85 E-value=0.6 Score=44.52 Aligned_cols=181 Identities=22% Similarity=0.197 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHh--cCCchHHHHhhccCCHHHHHHHHHHHHHhhcc--CcchhhHhhhcCChHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPT 84 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~ 84 (548)
+...|+.++..+.++....... ..+.+ .-.+..+.+.++.+..+-+..|++++.-++-. .......+.+. ..+.
T Consensus 56 ~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~ 133 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE-LKPV 133 (309)
T ss_pred CHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHH
Confidence 3567888888888887543322 22221 13466777778877777788888888877652 23444555554 6778
Q ss_pred HHHHhccCC--hHHHHHHHHHHHHhhc---CChhHHHHHHhcCChHHH--HHhhhc----------CChHHHHHHHHHHH
Q 008940 85 LILMLRSED--SAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPV--IGLLSS----------CCSESQREAALLLG 147 (548)
Q Consensus 85 Lv~ll~~~~--~~v~~~a~~~L~~l~~---~~~~~~~~~~~~g~i~~L--~~ll~~----------~~~~~~~~a~~~L~ 147 (548)
|.+.+.+.. ..+|..++.+|+-++. ..++.....++ .+..+ ....+. +++.+...|+.+.+
T Consensus 134 L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~ 211 (309)
T PF05004_consen 134 LKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA 211 (309)
T ss_pred HHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence 888887654 4556666666666543 22221111111 12211 111111 12456777766666
Q ss_pred HhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940 148 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 193 (548)
Q Consensus 148 ~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 193 (548)
-|...-+.....-.-...++.|..+|.+++.+||..|..+|.-|..
T Consensus 212 lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 212 LLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6655544432222224578999999999999999999998887753
No 196
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.71 E-value=0.54 Score=44.87 Aligned_cols=190 Identities=16% Similarity=0.104 Sum_probs=113.2
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhh--cCChHHHHHHhccCChHHHHHHHHHHHHhhcC--ChhHHHH
Q 008940 42 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHS--SPNIKKE 117 (548)
Q Consensus 42 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~ 117 (548)
..+..+.+.....|..++..+.++... ......+.+ ..+++.+.+.++.+..+-+..|+++++-++.. ...-...
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~-~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSS-RYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 345555666788999999999988863 222233322 23577778888877766677787777777543 1122234
Q ss_pred HHhcCChHHHHHhhhcCC--hHHHHHHHHHHHHhhcCCchhHHHHH-hcCChH--HHHHhhCC----------CCHHHHH
Q 008940 118 VLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATDSDCKVHIV-QRGAVR--PLIEMLQS----------PDVQLRE 182 (548)
Q Consensus 118 ~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~v~--~L~~ll~~----------~~~~v~~ 182 (548)
+.+ ...|.|.+.+.+.. ...+..++.+|+-++.........+. -...++ +.....+. +++.+..
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 443 46788888887755 44556666666665532211111111 012333 12222222 2346777
Q ss_pred HHHHHHHHhhcCCcch-hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940 183 MSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 233 (548)
Q Consensus 183 ~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 233 (548)
.|+.+-+-|...-+.. ..-.-...++.|..+|.+.+.+||..|..+|+-|-
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7777766666444431 11122346888999999999999999988887663
No 197
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=2.1 Score=46.01 Aligned_cols=306 Identities=12% Similarity=0.043 Sum_probs=155.3
Q ss_pred hhHHHHHHHHHHHHHhh---hChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 9 VNSVIRRAADAITNLAH---ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~---~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
.+.-...|++.+++++. .....+. ..+.=.+..+...++++---+|.+||+.++..+.-+-.....+ ..+++..
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t 507 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELT 507 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHH
Confidence 34445677777777773 2222222 2223345566667777788899999999999995222222222 2356677
Q ss_pred HHHhc-cCChHHHHHHHHHHHHhhcCChhHHHHHHh--cCChHHHHHhhhcCChHHHHHHHH-HHHHhhcCCchhHHHHH
Q 008940 86 ILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSCCSESQREAAL-LLGQFAATDSDCKVHIV 161 (548)
Q Consensus 86 v~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~ 161 (548)
.++|. +.+-.|+..|+-+|..+.++.+.....+.. .+.++.|+++.+..+.+....+.. .++..+..-.+....+.
T Consensus 508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~ 587 (1010)
T KOG1991|consen 508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC 587 (1010)
T ss_pred HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 77777 778889999999999998876655343332 234555566665544443333333 22333211111111122
Q ss_pred hcCChHHHHHhhCC---C---CHHHHHHHHHHHHHhh---cCCcchhhhH---hcCChHHHHHhhcCCChhHHHHHHHHH
Q 008940 162 QRGAVRPLIEMLQS---P---DVQLREMSAFALGRLA---QDMHNQAGIA---HNGGLVPLLKLLDSKNGSLQHNAAFAL 229 (548)
Q Consensus 162 ~~g~v~~L~~ll~~---~---~~~v~~~a~~~L~~l~---~~~~~~~~~~---~~~~l~~L~~ll~~~~~~v~~~a~~~L 229 (548)
......+.+++.. . +.+-...|.++|..+. ..-++...+. +...++.+-..|++.-.++-+.++..+
T Consensus 588 -q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~ 666 (1010)
T KOG1991|consen 588 -QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIV 666 (1010)
T ss_pred -HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2344556666653 1 2223344444444433 2222222221 112233344455555556666666665
Q ss_pred HhcccCC-cchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccC
Q 008940 230 YGLADNE-DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 308 (548)
Q Consensus 230 ~~l~~~~-~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~ 308 (548)
.++.... +....+ =+.++.+...+....-+.-....-+|.|+..
T Consensus 667 ~~~t~~~~~Isp~m-----------------------------------W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 667 SSLTFLSKEISPIM-----------------------------------WGLLELILEVFQDDGIDYFTDMMPALHNYVT 711 (1010)
T ss_pred hhhhhhhcccCHHH-----------------------------------HHHHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence 5554321 111111 1245555566666666666777778887764
Q ss_pred CCcc--c-eeeecCCchHHHHHhhcCCCCcc--chhhHHHHHHHhhhccc
Q 008940 309 PDDQ--R-TIFIDGGGLELLLGLLGSTNPKQ--QLDGAVALFKLANKATT 353 (548)
Q Consensus 309 ~~~~--~-~~~~~~~~i~~L~~ll~~~~~~v--~~~a~~~L~~l~~~~~~ 353 (548)
.... . ......-........+.+.+... ...|++.+..+.-...+
T Consensus 712 ~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg 761 (1010)
T KOG1991|consen 712 YGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG 761 (1010)
T ss_pred eCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC
Confidence 3221 1 11111112333344454433222 44577777666655443
No 198
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.69 E-value=0.085 Score=53.54 Aligned_cols=129 Identities=19% Similarity=0.202 Sum_probs=86.3
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcC
Q 008940 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 122 (548)
Q Consensus 43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 122 (548)
++...+ ++...+..|+..+.....+=|+..+. ++..+++++.+++..||..|++.|-.+|.++++....+
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv---- 97 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV---- 97 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH----
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH----
Confidence 444444 57889999999999988765665554 68889999999999999999999999999877665443
Q ss_pred ChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC---CCCHHHHHHHHHHHHH
Q 008940 123 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---SPDVQLREMSAFALGR 190 (548)
Q Consensus 123 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~---~~~~~v~~~a~~~L~~ 190 (548)
...|+++|.++++.....+-.+|..+...++. +.+..+...+. ++++.+|+.++..|..
T Consensus 98 -aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 98 -ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp -HHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 45899999988877777777777777654443 23344444443 4677889988877754
No 199
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.64 E-value=0.19 Score=45.78 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHh
Q 008940 52 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130 (548)
Q Consensus 52 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 130 (548)
......|++.|.-++--++..+..+.+...+..++++|. ...+.++..++.+|..+..+++.+.+.+-+.+|+..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 334566888998888878999999999999999999995 5678999999999999999999998999999999999999
Q ss_pred hhcCC--hHHHHHHHHHHHHhh
Q 008940 131 LSSCC--SESQREAALLLGQFA 150 (548)
Q Consensus 131 l~~~~--~~~~~~a~~~L~~l~ 150 (548)
+++.. .+++-+++..|.-..
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HccccccHHHhHHHHHHHHHHH
Confidence 98754 667777777665554
No 200
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.50 E-value=0.02 Score=33.20 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=25.0
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhhc
Q 008940 82 LPTLILMLRSEDSAIHYEAVGVIGNLVH 109 (548)
Q Consensus 82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~ 109 (548)
++.++++++++++++|..|+.+|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999975
No 201
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.45 E-value=0.028 Score=32.60 Aligned_cols=29 Identities=28% Similarity=0.549 Sum_probs=25.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940 166 VRPLIEMLQSPDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 194 (548)
+|.+++++++++++||..|+.+|+.++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999753
No 202
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.40 E-value=0.05 Score=50.90 Aligned_cols=88 Identities=23% Similarity=0.251 Sum_probs=64.5
Q ss_pred ccEEEEeC-CeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHhHHHHHHHHH
Q 008940 381 SDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAAD 459 (548)
Q Consensus 381 ~Dv~~~~~-~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~~a~ 459 (548)
.|+.+... |+.|.|||..++++|.+|..-+..-+. ...+|.-..+-+.+|..|++|+|-..-.+-+....+|+.+..
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynallsi~~ 227 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLSIEV 227 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHhhhh
Confidence 46777664 788999999999999988654443222 233565567788999999999998744444555688999999
Q ss_pred HhChHhHHHHH
Q 008940 460 QYLLEGLKRLC 470 (548)
Q Consensus 460 ~~~~~~l~~~c 470 (548)
+|+++.+-...
T Consensus 228 kF~~e~l~~~~ 238 (516)
T KOG0511|consen 228 KFSKEKLSLEI 238 (516)
T ss_pred hccHHHhHHHH
Confidence 99887765443
No 203
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.27 E-value=2.3 Score=41.79 Aligned_cols=150 Identities=9% Similarity=0.141 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHhhhChhhH---HHHHh-cCCchHHHHhhccCC---HHHHHHHHHHHHHhhccCcchhhHhhhcCChH
Q 008940 11 SVIRRAADAITNLAHENSSIK---TRVRM-EGGIPPLVELLEFTD---TKVQRAAAGALRTLAFKNDENKNQIVECNALP 83 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~---~~i~~-~g~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 83 (548)
...+.-++.+..+.+.+.... .-+++ ......|...+++.. +.+-..|+..+..+....|.....+.+.|.++
T Consensus 75 ~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~ 154 (379)
T PF06025_consen 75 QLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID 154 (379)
T ss_pred HHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence 445555566666664122222 22333 333455556666553 78889999999999987888888899999999
Q ss_pred HHHHHhc-c---CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-------hHHHHHHHHHHHHhhcC
Q 008940 84 TLILMLR-S---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-------SESQREAALLLGQFAAT 152 (548)
Q Consensus 84 ~Lv~ll~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-------~~~~~~a~~~L~~l~~~ 152 (548)
.+++.+. . ++.++....-.+|+.||-++.. .+.+.+.+.++.+++++.+++ .+........+-.|.++
T Consensus 155 ~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH 233 (379)
T PF06025_consen 155 AFLDAITAKGILPSSEVLTSLPNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRH 233 (379)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHcc
Confidence 9999887 3 3678888888889999877444 577888899999999987642 12333444456666666
Q ss_pred CchhHHHHH
Q 008940 153 DSDCKVHIV 161 (548)
Q Consensus 153 ~~~~~~~~~ 161 (548)
.|..+..++
T Consensus 234 ~p~Lk~~i~ 242 (379)
T PF06025_consen 234 HPSLKPDII 242 (379)
T ss_pred CHHHHHHHH
Confidence 666555443
No 204
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.29 Score=53.20 Aligned_cols=222 Identities=11% Similarity=0.075 Sum_probs=131.9
Q ss_pred chhhhhHHHHHHHHHHHHHhhhChhhHHHHHh--cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCc-chhhHhhhcCC
Q 008940 5 CSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNA 81 (548)
Q Consensus 5 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~ 81 (548)
..++++.+|.++-+.|..++.. +........ ..+-..|..-+++.....+..++.+|..+....+ ++...+.+. +
T Consensus 663 e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~-I 740 (1176)
T KOG1248|consen 663 ENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL-I 740 (1176)
T ss_pred hccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHH-H
Confidence 4456789999999999999954 333322221 0122344445556667788888888888876444 444444333 4
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcC------ChHHHHHhhhcC----ChHHHHHHHHHHHHhhc
Q 008940 82 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG------ALQPVIGLLSSC----CSESQREAALLLGQFAA 151 (548)
Q Consensus 82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g------~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~ 151 (548)
.+.++.+ ++.+...++.+..+|..++.. ....+.| .+..++..+.-. ...+....+.++..+..
T Consensus 741 ~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i-----~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 741 PEVILSL-KEVNVKARRNAFALLVFIGAI-----QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred HHHHHhc-ccccHHHHhhHHHHHHHHHHH-----HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 4444444 888889999999999888720 1111111 344444444322 22222222344444432
Q ss_pred CCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHH
Q 008940 152 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 230 (548)
Q Consensus 152 ~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 230 (548)
..........-.++++.+.-.|.++.++++..|.+.+.-++...+. +-.-.....++.++.++++....++..+-..|-
T Consensus 815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2222222222245667777778899999999999999999866543 322223345667777777777777777766776
Q ss_pred hccc
Q 008940 231 GLAD 234 (548)
Q Consensus 231 ~l~~ 234 (548)
.|.+
T Consensus 895 kLir 898 (1176)
T KOG1248|consen 895 KLIR 898 (1176)
T ss_pred HHHH
Confidence 6654
No 205
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.20 E-value=1.7 Score=43.62 Aligned_cols=72 Identities=24% Similarity=0.231 Sum_probs=54.1
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec-CCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 280 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 280 ~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
++|.|+.-.+..+.+.+...+.+|.++..+-+.....-+ ...+|.|++-|+.++++++..+..+|..+..+.
T Consensus 324 ~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 324 VLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 567777777766666888889999999876442222122 246899999999999999999999999988764
No 206
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.19 E-value=0.061 Score=46.92 Aligned_cols=127 Identities=18% Similarity=0.130 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcchhhhHhc----------------CChHHHHHhhcC------CChhHHHHHHHHHHhc
Q 008940 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHN----------------GGLVPLLKLLDS------KNGSLQHNAAFALYGL 232 (548)
Q Consensus 175 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----------------~~l~~L~~ll~~------~~~~v~~~a~~~L~~l 232 (548)
+++......++..|.|++........+.+. ..+..|+..+.. ....-..+.+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 344456777888899998877665533321 235556666644 1234556888999999
Q ss_pred ccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCcc
Q 008940 233 ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ 312 (548)
Q Consensus 233 ~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~ 312 (548)
+..++.+..+.+..- ..+.+..|+.++.+.+..-|..++.+|.|+|...+.
T Consensus 86 S~~~~gR~~~l~~~~-----------------------------~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~ 136 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQR-----------------------------YDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDS 136 (192)
T ss_pred cCCHHHHHHHhCchh-----------------------------hhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhH
Confidence 999988888754320 001478888999989888899999999999998776
Q ss_pred ceeeecC---CchHHHHHhhc
Q 008940 313 RTIFIDG---GGLELLLGLLG 330 (548)
Q Consensus 313 ~~~~~~~---~~i~~L~~ll~ 330 (548)
...++.. +.+|.|+--+.
T Consensus 137 H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 137 HEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHhcCchhhhhHHHHHhhcc
Confidence 5555553 45565555554
No 207
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.25 Score=50.75 Aligned_cols=156 Identities=21% Similarity=0.207 Sum_probs=99.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH-hccCChHHHHHHHHHHHHhhcCChhHHHHHHh
Q 008940 42 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 120 (548)
Q Consensus 42 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 120 (548)
.+-+++.+.|+-+|...+.++..--.+.. +.+++..|+.. ..+.+.+||+.|+-+|+-++..+++.
T Consensus 523 lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~------ 589 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ------ 589 (929)
T ss_pred HHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh------
Confidence 33456677778787777665543322211 23456667766 56789999999999999888776663
Q ss_pred cCChHHHHHhhh-cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC--cc
Q 008940 121 AGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM--HN 197 (548)
Q Consensus 121 ~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~ 197 (548)
.|..+.+|. +.++.||.-++.+|+-.|.+. ..+. ++..|-.+..+...-||+.|+-++.-+.... ..
T Consensus 590 ---~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~ 659 (929)
T KOG2062|consen 590 ---LPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL 659 (929)
T ss_pred ---chHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccccc
Confidence 666777775 567889999999999888663 3222 4455556666666678888888777665222 22
Q ss_pred hhhhHhcCChHHHHHhhcCCChhHH
Q 008940 198 QAGIAHNGGLVPLLKLLDSKNGSLQ 222 (548)
Q Consensus 198 ~~~~~~~~~l~~L~~ll~~~~~~v~ 222 (548)
+..+ .+....+.+.+.+++.+..
T Consensus 660 ~pkv--~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 660 CPKV--NGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred CchH--HHHHHHHHHHhhhhhhHHH
Confidence 2222 1334456777776655443
No 208
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=1 Score=48.25 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=97.7
Q ss_pred HHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc------c--CCHHHHHHHHHHHHHhhcc--CcchhhHhhhcCChHH
Q 008940 15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE------F--TDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPT 84 (548)
Q Consensus 15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~------~--~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~ 84 (548)
.|+..+..++... .+..+ .|.++-+++.+. . .++.....|++.++++++- .+..-+...+.=++..
T Consensus 391 Aa~~~l~~~~~KR--~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h 466 (1010)
T KOG1991|consen 391 AALDFLTTLVSKR--GKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH 466 (1010)
T ss_pred HHHHHHHHHHHhc--chhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence 4555666666321 11111 256677777776 2 2467788899999998851 1222223333335667
Q ss_pred HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh-cCChHHHHHHHHHHHHhhcCCchhHHHHHh-
Q 008940 85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQ- 162 (548)
Q Consensus 85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~- 162 (548)
+++.++++---+|..|+|+++.++.-.-. +...-..++.....+|. +.+-.|+..|+.||..+.+..+.....+..
T Consensus 467 VfP~f~s~~g~Lrarac~vl~~~~~~df~--d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h 544 (1010)
T KOG1991|consen 467 VFPEFQSPYGYLRARACWVLSQFSSIDFK--DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH 544 (1010)
T ss_pred hhHhhcCchhHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence 77888888889999999999999842211 11222235666777777 677889999999999998776644332211
Q ss_pred -cCChHHHHHhhCC
Q 008940 163 -RGAVRPLIEMLQS 175 (548)
Q Consensus 163 -~g~v~~L~~ll~~ 175 (548)
.+.++.|+.+.+.
T Consensus 545 vp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 545 VPPIMQELLKLSNE 558 (1010)
T ss_pred hhHHHHHHHHHHHh
Confidence 3456666666665
No 209
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.86 Score=49.19 Aligned_cols=301 Identities=14% Similarity=0.101 Sum_probs=164.7
Q ss_pred hhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchh---hHhhh---c
Q 008940 6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK---NQIVE---C 79 (548)
Q Consensus 6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~~---~ 79 (548)
+++.+.+++.++.+|..|+...|+ ....+.+++++....+.+...|.....+.+.+........ ..+.+ .
T Consensus 554 ~HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~ 629 (1133)
T KOG1943|consen 554 CHWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIA 629 (1133)
T ss_pred ccccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhh
Confidence 567789999999999999965444 2335778899988888888888777777766664211111 00111 1
Q ss_pred C---ChHHHHH-HhccC-ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc
Q 008940 80 N---ALPTLIL-MLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 154 (548)
Q Consensus 80 g---~i~~Lv~-ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 154 (548)
| +++.+.. -+..+ ..-.+...+..+.+++..........+..+....+.+.+.+++ .++..+.+++..+++..-
T Consensus 630 ~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~ 708 (1133)
T KOG1943|consen 630 GLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYV 708 (1133)
T ss_pred hhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHH
Confidence 1 1222211 11111 2345556667777776554544455555555556666665555 788889999999885321
Q ss_pred hhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCcc---hhhhHhcCChHHHHHhhcCC-ChhHHHHHHHHH
Q 008940 155 DCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHN---QAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFAL 229 (548)
Q Consensus 155 ~~~~~~~~~g~v~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L 229 (548)
..-. ......+...+..+.+. +..++.-...+++.+....-. +..+ ...++...... .++-+...+.++
T Consensus 709 ~~d~-~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~l-----c~~~l~~~p~d~~a~aR~~~V~al 782 (1133)
T KOG1943|consen 709 KADE-GEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKL-----CKLVLELLPSDAWAEARQQNVKAL 782 (1133)
T ss_pred hcCc-hhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHH-----HHHHhccCcccccHHHHHHHHHHH
Confidence 1100 00112445566666654 556676666667766532211 1111 22233333333 455566666666
Q ss_pred HhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh------h--hhhhhhhHHH
Q 008940 230 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV------A--EKGVQRRVAL 301 (548)
Q Consensus 230 ~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~------~--~~~~~~~a~~ 301 (548)
..++.... ..... ..-..+...|++.|++ + ..-+|++|..
T Consensus 783 ~~v~~~~~---~~~~~-----------------------------~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~ 830 (1133)
T KOG1943|consen 783 AHVCKTVT---SLLFS-----------------------------ESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMK 830 (1133)
T ss_pred HHHHHHHH---Hhhcc-----------------------------ccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHH
Confidence 66653221 00000 0112356677777765 1 2468999999
Q ss_pred HhhhccCCCccceeeecCCchHHHHH-hhcCCCCcc---chhhHHHHHHHhhh
Q 008940 302 ALAHLCSPDDQRTIFIDGGGLELLLG-LLGSTNPKQ---QLDGAVALFKLANK 350 (548)
Q Consensus 302 aL~~l~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v---~~~a~~~L~~l~~~ 350 (548)
++..+...-.. ..+.+.+.+..++. +++..-+++ +.-|+.++..+..+
T Consensus 831 al~~~~~~l~~-p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 831 ALSSLLDTLSS-PKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred HHHhhhhhhcC-cccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 98877543222 23444555544433 666544444 55677777766654
No 210
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.92 E-value=2.1 Score=39.03 Aligned_cols=136 Identities=24% Similarity=0.215 Sum_probs=90.8
Q ss_pred hHHHH-hhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940 41 PPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119 (548)
Q Consensus 41 ~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 119 (548)
+.|+. +-+..+++.+...+.+|..++.++..+... +++.|..+...+..+.+..+.+.+..+...++...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 34444 445678999999999999999853122222 46667777777777777888888888876544331
Q ss_pred hcCChHHHHHh--h------hcC--ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHH
Q 008940 120 AAGALQPVIGL--L------SSC--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFAL 188 (548)
Q Consensus 120 ~~g~i~~L~~l--l------~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll-~~~~~~v~~~a~~~L 188 (548)
+.+..++.. + .+. ..+.....+.++..+|...++ ....+++.+..++ ++.++.++..++.++
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 233333333 0 111 133444445678888877665 2234678888888 788888999999999
Q ss_pred HHhh
Q 008940 189 GRLA 192 (548)
Q Consensus 189 ~~l~ 192 (548)
..+|
T Consensus 147 ~~Lc 150 (234)
T PF12530_consen 147 APLC 150 (234)
T ss_pred HHHH
Confidence 9999
No 211
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.73 E-value=0.33 Score=41.15 Aligned_cols=147 Identities=21% Similarity=0.274 Sum_probs=97.0
Q ss_pred CCchHHHHhhc--cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHH
Q 008940 38 GGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 115 (548)
Q Consensus 38 g~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 115 (548)
..+..++..|. ...+++|..+.-++..+- +..++...+. +-+.+-..+..++.+-...+..++..+--..++..
T Consensus 3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH
Confidence 34555666554 356788988888888884 2222222221 23344445555555577778888888877777765
Q ss_pred HHHH-hcCChHHHHHhhh--cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC-CCCHH-HHHHHHHHHHH
Q 008940 116 KEVL-AAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQ-LREMSAFALGR 190 (548)
Q Consensus 116 ~~~~-~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~-~~~~~-v~~~a~~~L~~ 190 (548)
..+. ..|.++.++.++. ..+..+...++.+|..-|.+ ...|. .....+++.|-...+ +++.. ++..|+-+|..
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 5555 5788999999998 67788888888888877643 55554 444577899999996 45555 78877777654
No 212
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.66 E-value=0.26 Score=53.42 Aligned_cols=148 Identities=17% Similarity=0.181 Sum_probs=113.8
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
..|++|..|.-+|+.++.-+.+... ..+|.|+..++ ++++.+|..+..+++.++-.-|.. ++. ..+.|.
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl----ie~-~T~~Ly 1004 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL----IEP-WTEHLY 1004 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcccc----cch-hhHHHH
Confidence 4489999999999999854444333 45778888887 889999999999999988632221 222 566788
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
.-|.++++.+|+.|+.+|.+|... +.+--.|.++.+..++.+++++++..|-..+..|+.... .+. +++
T Consensus 1005 ~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n----~iy--nlL 1073 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKGN----TIY--NLL 1073 (1251)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhccc----chh--hhc
Confidence 888999999999999999999753 455567999999999999999999999888888865431 222 467
Q ss_pred HHHHHhhCCC
Q 008940 167 RPLIEMLQSP 176 (548)
Q Consensus 167 ~~L~~ll~~~ 176 (548)
|-++..|.+.
T Consensus 1074 Pdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1074 PDILSRLSNG 1083 (1251)
T ss_pred hHHHHhhccC
Confidence 7777777664
No 213
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.66 E-value=4 Score=43.42 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=91.7
Q ss_pred HHhcCChHHHHHhhCCC--------CHHHHHHHHHHHHHhhcCCcchhhhHhc--------CChHHHHHhhc----CCCh
Q 008940 160 IVQRGAVRPLIEMLQSP--------DVQLREMSAFALGRLAQDMHNQAGIAHN--------GGLVPLLKLLD----SKNG 219 (548)
Q Consensus 160 ~~~~g~v~~L~~ll~~~--------~~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~~l~~L~~ll~----~~~~ 219 (548)
+.+.+++..++++..-+ ..++...|+.+|+-+..-+..+.++... .|+..++..-. -.++
T Consensus 597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp 676 (1516)
T KOG1832|consen 597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDP 676 (1516)
T ss_pred HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCH
Confidence 45556677777766431 2356677777777777777766665432 13444433322 1268
Q ss_pred hHHHHHHHHHHhcccCC-cchHHHHHh-cCcccccccchh-hhhhhHHHHHHHHHHHH-hhhhhhhHHHHHHHHhhh---
Q 008940 220 SLQHNAAFALYGLADNE-DNVADFIRV-GGVQKLQDGEFI-VQATKDCVAKTLKRLEE-KIHGRVLNHLLYLMRVAE--- 292 (548)
Q Consensus 220 ~v~~~a~~~L~~l~~~~-~~~~~~~~~-g~i~~L~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~ll~~~~--- 292 (548)
+++..|+.+|.|+...+ ++....+.. |--.- -...+. .++...-....+.++.. +...+.+..|+++++-..
T Consensus 677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g-~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t 755 (1516)
T KOG1832|consen 677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSG-DRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPT 755 (1516)
T ss_pred HHHHHHHhhhheeecCCCCcchhhhhhccccCC-CccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 99999999999996544 554433221 11000 000000 01111111223344433 345678999999998743
Q ss_pred --hhhhhhHHHHhhhccCCCccceeeec
Q 008940 293 --KGVQRRVALALAHLCSPDDQRTIFID 318 (548)
Q Consensus 293 --~~~~~~a~~aL~~l~~~~~~~~~~~~ 318 (548)
..+|.-||.+|.-|++++..|+++.+
T Consensus 756 ~aD~IRalAc~~L~GLaR~~tVrQIltK 783 (1516)
T KOG1832|consen 756 TADCIRALACRVLLGLARDDTVRQILTK 783 (1516)
T ss_pred cHHHHHHHHHHHHhccccCcHHHHHHHh
Confidence 35789999999999999987765444
No 214
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=0.54 Score=49.37 Aligned_cols=214 Identities=13% Similarity=0.066 Sum_probs=131.6
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 87 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 87 (548)
..+.++..++..|..+.+ +...+..+...+++...+..|++.|+-+-..|++.+..+|.- ....+++.+.+
T Consensus 739 ~qvpik~~gL~~l~~l~e-~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------y~e~il~dL~e 809 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIE-KRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------YPEDILPDLSE 809 (982)
T ss_pred CcccchHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------cchhhHHHHHH
Confidence 345788899999999994 446677788889999999999999999999999999999973 22346666666
Q ss_pred Hh-cc---CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhc
Q 008940 88 ML-RS---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR 163 (548)
Q Consensus 88 ll-~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 163 (548)
.- +. ..++.+..+-.++.+++..-.+....... -.+..++....+++...|..++.+++++|.-........+ .
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~ 887 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-H 887 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-H
Confidence 33 21 12344555556666665433332222222 3456667777777777888889999999843221111111 2
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcch-hhhHhc---CChHHHHHhhc-CCChhHHHHHHHHHHhc
Q 008940 164 GAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQ-AGIAHN---GGLVPLLKLLD-SKNGSLQHNAAFALYGL 232 (548)
Q Consensus 164 g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~---~~l~~L~~ll~-~~~~~v~~~a~~~L~~l 232 (548)
.++..++.+.+. +.+.+|..|+-.+..+-.+-... -.+... .....+..+.. ++++.++.+++.++-.+
T Consensus 888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 888 EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 345555555554 56778899988888877544321 111111 11222333333 33455666666665544
No 215
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.46 E-value=1.4 Score=46.73 Aligned_cols=223 Identities=13% Similarity=0.069 Sum_probs=143.8
Q ss_pred chhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChH
Q 008940 5 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 83 (548)
Q Consensus 5 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 83 (548)
..+..|...-++...+...+...+.+...+. -.+...+..+. +..+.++..|++++...+. .. .-.-...++++
T Consensus 459 ~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~-vl~~~~p~ild 533 (1005)
T KOG2274|consen 459 VYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VK-VLLSLQPMILD 533 (1005)
T ss_pred ccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ce-eccccchHHHH
Confidence 3455666666888888877654333333222 22333444443 3457788888888887773 11 11112346788
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh--cCChHHHHHHHHHHHHhhcCCchhHHHHH
Q 008940 84 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIV 161 (548)
Q Consensus 84 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 161 (548)
.|+++....+.++......+|+..+..+++. ....+..+.|.+..+.. +++|.+...+-.++..++.. ..+. .-.
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~-g~m 610 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANY-GPM 610 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhh-cch
Confidence 8888888888999999999999999887774 44455667777777654 35566666666666666531 1111 122
Q ss_pred hcCChHHHHHhhCCCC----HHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhh-cCCChhHHHHHHHHHHhcccC
Q 008940 162 QRGAVRPLIEMLQSPD----VQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADN 235 (548)
Q Consensus 162 ~~g~v~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~ 235 (548)
....+|.++..|..++ +.....++..|..+.++.++ -.......+++++.+.. .+++.+....+..+|..+...
T Consensus 611 ~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 611 QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 3458899999998765 56777888888877766544 33344445677777665 456677778888888887543
No 216
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=2.3 Score=44.47 Aligned_cols=237 Identities=14% Similarity=0.110 Sum_probs=128.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhc
Q 008940 84 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR 163 (548)
Q Consensus 84 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 163 (548)
.+.++.++.+..+|...-.++..++.-.++. . -+...+.+-+...++..+..|.++|..+..+.
T Consensus 68 ~~tKlfQskd~~LRr~vYl~Ikels~isedv--i----ivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~---------- 131 (865)
T KOG1078|consen 68 AITKLFQSKDVSLRRMVYLAIKELSKISEDV--I----IVTSSLMKDMTGKEDLYRAAAIRALCSIIDGT---------- 131 (865)
T ss_pred HHHHHHhhcCHHHHHHHHHHHhhccccchhh--h----hhhHHHHhhccCCCcchhHHHHHHHHhhcCcc----------
Confidence 4456667888899999888888887554432 1 12344554455556667888888888876332
Q ss_pred CChHHHHHhh----CCCCHHHHHHH-HHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940 164 GAVRPLIEML----QSPDVQLREMS-AFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 238 (548)
Q Consensus 164 g~v~~L~~ll----~~~~~~v~~~a-~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 238 (548)
.++..-..+ -+.++.+...| +..++-+......-.. ..........+.+.-+|.+|++.|..+-.++.-
T Consensus 132 -m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkr-----w~neiqea~~s~~~m~QyHalglLyqirk~drl 205 (865)
T KOG1078|consen 132 -MLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKR-----WANEVQEAVNSDNIMVQYHALGLLYQIRKNDRL 205 (865)
T ss_pred -hhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHH-----HHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 222222222 23444443332 2233333322211100 111122233344457788888888888554321
Q ss_pred -hHHHHHhcCcccccccchhhhhhhHHHHH--HHHHHHHh--hhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccc
Q 008940 239 -VADFIRVGGVQKLQDGEFIVQATKDCVAK--TLKRLEEK--IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR 313 (548)
Q Consensus 239 -~~~~~~~g~i~~L~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~ 313 (548)
...++.. +.. ...-.....|... ..+.+.+. ......+.+=.++.+....+..+|++++.++..-....
T Consensus 206 a~sklv~~-----~~~-~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~ 279 (865)
T KOG1078|consen 206 AVSKLVQK-----FTR-GSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE 279 (865)
T ss_pred HHHHHHHH-----Hcc-ccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh
Confidence 1111111 111 0001112333211 11111111 12235555566777789999999999999995432211
Q ss_pred eeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940 314 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 314 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 352 (548)
+. -.+..|.-++.++..-.|.+|...|..+|....
T Consensus 280 --l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 280 --LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred --cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence 11 167888888999988999999999999988653
No 217
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=94.28 E-value=1.7 Score=42.54 Aligned_cols=172 Identities=15% Similarity=0.123 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc-CChHHHHHHHHHHHHhhcCChhHHHHHHh--cCChHHH
Q 008940 51 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPV 127 (548)
Q Consensus 51 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L 127 (548)
..+-+..|+.-|..+...+....+.-.-..++..+++.|.+ .+...+..|+++|..++...+.. +.+ +-+|..+
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~---l~DstE~ai~K~ 376 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR---LFDSTEIAICKV 376 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh---hhchHHHHHHHH
Confidence 35566777775555544333333332222367788888987 78899999999999998765432 222 2356677
Q ss_pred HHhhhcCChHHHHHHHH-HHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhh-hHhcC
Q 008940 128 IGLLSSCCSESQREAAL-LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG-IAHNG 205 (548)
Q Consensus 128 ~~ll~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~ 205 (548)
++.-.+..+++...|.. ++..+++..|.. .+..+..++...|......++..+..++..-..-.- ..-..
T Consensus 377 Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~d 448 (516)
T KOG2956|consen 377 LEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPD 448 (516)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhh
Confidence 77777777777666665 455566555543 233344455456666666777777777755432111 12235
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940 206 GLVPLLKLLDSKNGSLQHNAAFALYGLA 233 (548)
Q Consensus 206 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 233 (548)
..|.+++.-++.+..||+.++.+|..+.
T Consensus 449 iaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 449 IAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 6777888888889999999999988775
No 218
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.27 E-value=0.71 Score=47.32 Aligned_cols=213 Identities=15% Similarity=0.130 Sum_probs=132.5
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
..+.++..|--+|..+..-+.+... .-+|.++..+. +++|.+|..|+..++.++-. - ...++. ..+.|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vc-f---N~~~de-~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVC-F---NTTADE-HTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeecccccee-h---hhhhHH-HHHHHH
Confidence 4578888888888888643333222 45788888886 89999999999999887752 1 111222 466788
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
+-|.+.+..+|+.+..++..|... .++--.|-++.+..+|.+++.++...|-..+..++..+.. +-.|.+
T Consensus 978 rrL~De~~~V~rtclmti~fLila-----gq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt-----~yn~fi 1047 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILA-----GQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT-----MYNGFI 1047 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHc-----cceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc-----hhhhhH
Confidence 888899999999999999988643 2333468889999999999999999999999998754322 223455
Q ss_pred HHHHHhhCC---CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHH
Q 008940 167 RPLIEMLQS---PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI 243 (548)
Q Consensus 167 ~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 243 (548)
+.+-.+-++ ++.. -....+.|..+......++++.+ ....++++.....-....+.++.+|-...++...+.
T Consensus 1048 difs~ls~~ae~g~e~-fk~II~FLt~fI~kerh~kql~E----~L~~rl~rc~tq~qwd~~~~~l~nLp~k~~~~~~Ll 1122 (1128)
T COG5098 1048 DIFSTLSSDAENGQEP-FKLIIGFLTDFISKERHQKQLKE----SLFLRLLRCNTQSQWDKLLCSLFNLPDKIAGSGGLL 1122 (1128)
T ss_pred HHHHHcCchhhcCCCc-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHhcCCccccchhhHh
Confidence 443333222 1222 22334444444443333333322 112344444333334456667777755444444444
Q ss_pred Hh
Q 008940 244 RV 245 (548)
Q Consensus 244 ~~ 245 (548)
+.
T Consensus 1123 ~~ 1124 (1128)
T COG5098 1123 NR 1124 (1128)
T ss_pred hc
Confidence 33
No 219
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.25 E-value=1.7 Score=46.49 Aligned_cols=170 Identities=16% Similarity=0.196 Sum_probs=109.4
Q ss_pred HHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChH--HHHHhhcCCCh-h
Q 008940 145 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV--PLLKLLDSKNG-S 220 (548)
Q Consensus 145 ~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~--~L~~ll~~~~~-~ 220 (548)
+|++.+...+.....+.+.|++..+..+++. ...+++..+.+.+.|++...+.+........+. .+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7889998889999999999999999999986 566789999999999997766544433222232 34445554444 7
Q ss_pred HHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHH-HHHHHHHh-------hhhhhhHH-HHHHHHh-
Q 008940 221 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK-TLKRLEEK-------IHGRVLNH-LLYLMRV- 290 (548)
Q Consensus 221 v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~-L~~ll~~- 290 (548)
....++.+|+.+..+.+.... . ....|+.. ..+++... .....+.+ +..++..
T Consensus 574 rsY~~~siLa~ll~~~~~~~~---~--------------~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTE---C--------------VFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCcc---c--------------cchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence 888999999999765332000 0 00111110 01111100 11112222 4444444
Q ss_pred hhhhhhhhHHHHhhhccCC-CccceeeecCCchHHHHHhhcC
Q 008940 291 AEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGS 331 (548)
Q Consensus 291 ~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~ 331 (548)
..+..+..|.|++.+++.. ++..+.+.+.|+++.+.++-..
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVL 678 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchh
Confidence 6788999999999999864 5577777788888877665543
No 220
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=94.17 E-value=0.041 Score=51.68 Aligned_cols=139 Identities=18% Similarity=0.186 Sum_probs=110.5
Q ss_pred cEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHh--HHHHHHHHH
Q 008940 382 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI--AQDLLRAAD 459 (548)
Q Consensus 382 Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~--~~~ll~~a~ 459 (548)
+..+..+...+++|+.++...|+.|..+....-..+....+.+-.++...+..+.+++|.. ++-.+.. ...++.+..
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~ 106 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSH 106 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhh
Confidence 4444445678999999999999999888765533344556777788889999999999998 4433332 456666777
Q ss_pred HhChHhHHHHHHHHHHh-cCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHh
Q 008940 460 QYLLEGLKRLCEYTIAQ-DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSN 521 (548)
Q Consensus 460 ~~~~~~l~~~c~~~l~~-~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~ 521 (548)
.|.++..+..|...+.. .++..+++..+..+..+....|...+...+...|....+++.+..
T Consensus 107 ~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~ 169 (319)
T KOG1778|consen 107 VYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFA 169 (319)
T ss_pred hhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCcee
Confidence 89999999999887754 678899999999999999999999999999999999888665543
No 221
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.13 E-value=0.62 Score=50.73 Aligned_cols=161 Identities=24% Similarity=0.295 Sum_probs=122.7
Q ss_pred CCchHHHHhhc----cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCCh
Q 008940 38 GGIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP 112 (548)
Q Consensus 38 g~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~ 112 (548)
...|.+++..+ .++|++|..|.-+|+.+..-+.+. ++. -++.|+..+. ++++.+|..++-+++.++...+
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----ces-~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----CES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----HHH-HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 35677777774 357999999999999987533332 222 5888999997 8999999999999999987766
Q ss_pred hHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940 113 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 192 (548)
Q Consensus 113 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 192 (548)
..-+. .-+.|-.-|.+.++.+++.|...|..|...+ .+--.|.+.-+..++.+++++++..|-..+..|+
T Consensus 994 nlie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 994 NLIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 65333 3457888889999999999999999997432 2334699999999999999999999988888887
Q ss_pred cCCcchhhhHhcCChHHHHHhhcCCC
Q 008940 193 QDMHNQAGIAHNGGLVPLLKLLDSKN 218 (548)
Q Consensus 193 ~~~~~~~~~~~~~~l~~L~~ll~~~~ 218 (548)
..... +. +.+|.++.-|.+++
T Consensus 1064 ~k~n~---iy--nlLPdil~~Ls~~~ 1084 (1251)
T KOG0414|consen 1064 SKGNT---IY--NLLPDILSRLSNGN 1084 (1251)
T ss_pred hcccc---hh--hhchHHHHhhccCc
Confidence 55421 11 45777777777664
No 222
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=93.84 E-value=6.3 Score=38.10 Aligned_cols=133 Identities=16% Similarity=0.151 Sum_probs=80.5
Q ss_pred HHHHhhccCC-HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc----------cCChHHHHHHHHHHHHhhcC
Q 008940 42 PLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----------SEDSAIHYEAVGVIGNLVHS 110 (548)
Q Consensus 42 ~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~----------~~~~~v~~~a~~~L~~l~~~ 110 (548)
.+...|..+. ...+...+..+..+++ +....+.+.....++.|+.+.+ .++..+...+..+|+|+...
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSR-dk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSR-DKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhc-cccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 4666666655 5566677788888887 3444443333334555554443 13457889999999999999
Q ss_pred ChhHHHHHHhcCChHHHHHhhhcCC-----hHHHHHHHHHHHHhhcCCchhHH-HHHhcCChHHHHHhhCC
Q 008940 111 SPNIKKEVLAAGALQPVIGLLSSCC-----SESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQS 175 (548)
Q Consensus 111 ~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~v~~L~~ll~~ 175 (548)
++.+++...+......+++.+...- ..+...-.+.|--+..-....|. .+.+.++++.+-..+.+
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 9999999998887777777654321 11222222222222222234443 45667788888777754
No 223
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=93.65 E-value=0.59 Score=48.09 Aligned_cols=152 Identities=14% Similarity=0.187 Sum_probs=99.3
Q ss_pred hhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchh
Q 008940 77 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156 (548)
Q Consensus 77 ~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 156 (548)
.+.++++.|+++++..|..+|-.-+.-+-+.. +.....+++..+.|.+..-+.+.++.+++.++..+..++.--.+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~- 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK- 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch-
Confidence 45568888999998888888866655554443 33445667777889999989898998998888888887732111
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChH-HHHHhhcCCChhHHHHHHHHHHhcccC
Q 008940 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV-PLLKLLDSKNGSLQHNAAFALYGLADN 235 (548)
Q Consensus 157 ~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~-~L~~ll~~~~~~v~~~a~~~L~~l~~~ 235 (548)
...+...+..+..+-.+++..+|.+..-||+.++..... ..+.+.+. .+.+-++++-...+..+..+++.....
T Consensus 403 --~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 403 --RNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred --hhhcHHHHHHHHhhCccccCcccccceeeecccccccch---hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 133334555555555556677888888888877655322 11333333 355666666666777777777766654
Q ss_pred Cc
Q 008940 236 ED 237 (548)
Q Consensus 236 ~~ 237 (548)
.+
T Consensus 478 ~~ 479 (690)
T KOG1243|consen 478 FD 479 (690)
T ss_pred cc
Confidence 43
No 224
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.63 E-value=1.2 Score=39.14 Aligned_cols=142 Identities=10% Similarity=0.064 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC-----CHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHH
Q 008940 15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-----DTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILM 88 (548)
Q Consensus 15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~l 88 (548)
.|+..|.-++ +.|+.+..+.++.+--.|-..|... -+.+|..++..++.+... +++....+....++|..+++
T Consensus 119 naL~lLQcla-ShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 119 NALNLLQCLA-SHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHh-cCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 4555566666 7899999888877655555666432 267899999999999984 34455666777899999999
Q ss_pred hccCChHHHHHHHHHHHHhhcCChhHHHHHHh-------cCChHHHH-HhhhcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940 89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-------AGALQPVI-GLLSSCCSESQREAALLLGQFAATDSDCKV 158 (548)
Q Consensus 89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-------~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 158 (548)
+..+++--+..|+.++..+..++...+-.... ...+..++ ++.+.......+.+.++-..++ +++..|.
T Consensus 198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs-d~p~aR~ 274 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS-DKPHARA 274 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec-CCHhHHH
Confidence 99998888999999999997776554222111 11222222 2333445566677777766665 3355444
No 225
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=0.51 Score=43.58 Aligned_cols=145 Identities=19% Similarity=0.187 Sum_probs=100.0
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 160 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 160 (548)
.+...+..|.+.+++.+..++..+..|+...++....+.. ..|-.+++-+++....+.+.|+.++..+.+........
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3455677788899999999999999998766655444443 35667777888888899999999999997543332222
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940 161 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 233 (548)
Q Consensus 161 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 233 (548)
...+.+-.|+.--..++.-+++.|-.+|..+........ .++.|...+++.++.++..++....+..
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~------~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK------LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 112222222222233456689999999999987665443 3566777888999999888776665553
No 226
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.52 E-value=0.21 Score=35.67 Aligned_cols=67 Identities=10% Similarity=0.140 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcC-CChhHHHHHHHHHHhcccCCcchHHHHHhcC
Q 008940 181 REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNEDNVADFIRVGG 247 (548)
Q Consensus 181 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~ 247 (548)
.+.++|++++++..+.....+.+.+.++.++++..+ +...+|-.+..+|+-++...+..+.+.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 467899999999988777777777889999999875 5578999999999999999888888777663
No 227
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=93.42 E-value=0.35 Score=51.13 Aligned_cols=151 Identities=17% Similarity=0.107 Sum_probs=109.6
Q ss_pred CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 117 (548)
Q Consensus 38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 117 (548)
.++|.|++..+.....++..-+.+|.+...+.|...-.---....|.|++.|.-+|..+|..+..++.-+....+.....
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 57888888888767777888888888888655542211112356788888888899999999999888776554443222
Q ss_pred HHhcCChHHHHHhhhcCC---hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q 008940 118 VLAAGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 189 (548)
Q Consensus 118 ~~~~g~i~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~ 189 (548)
-+ ...+|.++.+=.+.+ ..+|..|..+|..+...-|...-...+..+++.+.+.|.++..-+|+.|..+=.
T Consensus 947 ~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 947 HL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred HH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 22 346777777766655 568889999999998766666666667788899999999988888888876643
No 228
>PRK14707 hypothetical protein; Provisional
Probab=93.39 E-value=9.2 Score=45.07 Aligned_cols=330 Identities=17% Similarity=0.093 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC
Q 008940 13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 92 (548)
Q Consensus 13 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~ 92 (548)
-+.|+..|..-...+++.+..+--.|+-..|=.+-+-++..+-..|+..|..-..++++.++.+-..|+-..|=.+-+=+
T Consensus 349 C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWP 428 (2710)
T PRK14707 349 CAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWP 428 (2710)
T ss_pred HHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCC
Confidence 33444444444335566665544333333333344556766666666666655556788888887776665555555667
Q ss_pred ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHh
Q 008940 93 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 172 (548)
Q Consensus 93 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l 172 (548)
+..+...++..|..-..++.+.++.+--.++...|-.+-+=++..+...++..|..-..++++.++.+--.++...|-.+
T Consensus 429 d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aL 508 (2710)
T PRK14707 429 DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSL 508 (2710)
T ss_pred cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHh
Confidence 77777777777766656667776665555544343333333566666666666655444545544444333343444333
Q ss_pred hCCCC-HHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccc
Q 008940 173 LQSPD-VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKL 251 (548)
Q Consensus 173 l~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L 251 (548)
-+-++ +...+.+.+.-+.+.....-...+...+....+-.+-+.++....+.++..|..+..+......-.....|..+
T Consensus 509 SK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~l 588 (2710)
T PRK14707 509 SKWPDTPICAEAASALAERVVDELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIV 588 (2710)
T ss_pred hcCCCcHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHH
Confidence 33343 34555556666666544433333222222222233334455555566666666554333222222223333444
Q ss_pred cccchhhhhhhHHHHHHHHHHHHh---------hhhhhhHHHHHHHHh-hhhhhhhhHHHHhh-hccCCCccceeeecCC
Q 008940 252 QDGEFIVQATKDCVAKTLKRLEEK---------IHGRVLNHLLYLMRV-AEKGVQRRVALALA-HLCSPDDQRTIFIDGG 320 (548)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~-~l~~~~~~~~~~~~~~ 320 (548)
++..........|..........+ .+..-+..+++-+.. ++......++..|. .+......+..+ +..
T Consensus 589 lNaLSKWP~~~aC~~Aa~~LA~~l~~~~~lr~~l~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~f-naQ 667 (2710)
T PRK14707 589 LNALSKWPDTAVCAEAVNALAERLVDEPDLRKELDPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTF-NSL 667 (2710)
T ss_pred HHhhccCCCcHHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhc-chH
Confidence 443333334455554332222222 222334444554543 33333333333333 233333322222 234
Q ss_pred chHHHHHhhc-CCCCccchhhHHH
Q 008940 321 GLELLLGLLG-STNPKQQLDGAVA 343 (548)
Q Consensus 321 ~i~~L~~ll~-~~~~~v~~~a~~~ 343 (548)
.+..+++-++ -++.++-..|+..
T Consensus 668 ~vAn~LNALSKWPe~e~Cr~Aa~~ 691 (2710)
T PRK14707 668 DVANALNALSKWPDTPVCAAAAGG 691 (2710)
T ss_pred HHHHHHHhhhcCCCchHHHHHHHH
Confidence 4556666555 3444443333333
No 229
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.36 E-value=1.3 Score=44.16 Aligned_cols=155 Identities=12% Similarity=0.194 Sum_probs=112.5
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCC----hHHHHHHHHHHHHhhcCChhHH
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIK 115 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~ 115 (548)
...+.+.+.+++...+..|+.-|..++. ++.....++...++..|..++.+++ .++....++++..+....- ..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 3467788888888888889999999997 7889999999999999999998764 4666667777666643321 11
Q ss_pred HHHHhcCChHHHHHhhh--cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940 116 KEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 193 (548)
Q Consensus 116 ~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 193 (548)
...+...++.....+.. ..+..+...|+..|-++...++...+.+.+.--++.|+..++..+..++..|...+..+..
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 11112233444444432 2345567778888888887777777888888889999999999999999888887777775
Q ss_pred CCc
Q 008940 194 DMH 196 (548)
Q Consensus 194 ~~~ 196 (548)
..+
T Consensus 243 ~a~ 245 (713)
T KOG2999|consen 243 KAP 245 (713)
T ss_pred hCC
Confidence 443
No 230
>PRK14707 hypothetical protein; Provisional
Probab=93.33 E-value=4.6 Score=47.29 Aligned_cols=246 Identities=17% Similarity=0.185 Sum_probs=120.1
Q ss_pred HHHHHHHHHhhhChhhHHHHHhcCCchHHHH-hhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh-ccC
Q 008940 15 RAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSE 92 (548)
Q Consensus 15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll-~~~ 92 (548)
.++..|......++..+..+-. .+|..++. +-+-++..--..++..|.....+....+..+-..| +...++.| +=+
T Consensus 183 ~aa~~la~~~~~~d~~~~~~~~-q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~-va~~lN~lsKwp 260 (2710)
T PRK14707 183 AVAPRFAALVASDDRLRSAMDA-QGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQE-LGNALNALSKWA 260 (2710)
T ss_pred HHHHHHHHHhcCChhhhcccch-HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHH-HHHHHHHHhcCC
Confidence 3444443333244455544433 33434443 33445533334444555444433444444544444 44444444 445
Q ss_pred ChHHHHHHHHHH-HHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHH
Q 008940 93 DSAIHYEAVGVI-GNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 171 (548)
Q Consensus 93 ~~~v~~~a~~~L-~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ 171 (548)
+......++..| ..++ +.+..++.+-..++-..|-.+-+-++..+...++..|..-.-++++.+..+ +.-.+...+.
T Consensus 261 ~~~~C~~a~~~lA~rl~-~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LN 338 (2710)
T PRK14707 261 DTPVCAAAASALAERLV-DDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALN 338 (2710)
T ss_pred CchHHHHHHHHHHHHHh-hhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHH
Confidence 554555554444 4444 446655555444433344444444666777777766655544555554333 2233444444
Q ss_pred hhCC-CC-HHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcC-CChhHHHHHHHHHH-hcccCCcchHHHHHhcC
Q 008940 172 MLQS-PD-VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALY-GLADNEDNVADFIRVGG 247 (548)
Q Consensus 172 ll~~-~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~g~ 247 (548)
.|+. ++ ...+..+...-..++.+.+-+..+- ..++..+++-+.. ++..+.+.++..|. .+..+.+-++.+-..|
T Consensus 339 alsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~- 416 (2710)
T PRK14707 339 ALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQG- 416 (2710)
T ss_pred HhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhh-
Confidence 4543 34 3444555444555666665555443 3455555555543 55566666666665 5565666555554433
Q ss_pred cccccccchhhhhhhHHHH
Q 008940 248 VQKLQDGEFIVQATKDCVA 266 (548)
Q Consensus 248 i~~L~~~~~~~~~~~~~~~ 266 (548)
+..+++..........|..
T Consensus 417 van~lnalsKWPd~~~C~~ 435 (2710)
T PRK14707 417 VSNALNALAKWPDLPICGQ 435 (2710)
T ss_pred HHHHHHHhhcCCcchhHHH
Confidence 3333333333334455543
No 231
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=93.32 E-value=8.3 Score=37.34 Aligned_cols=158 Identities=15% Similarity=0.159 Sum_probs=111.2
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhhc-CChhHHHHHHhc-C-ChHHHHHhhhcC-----C--------hHHHHHHHHH
Q 008940 82 LPTLILMLRSEDSAIHYEAVGVIGNLVH-SSPNIKKEVLAA-G-ALQPVIGLLSSC-----C--------SESQREAALL 145 (548)
Q Consensus 82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-g-~i~~L~~ll~~~-----~--------~~~~~~a~~~ 145 (548)
++.+-+.|+.....+...+++.|..++. ++......+... + -.+.+.+++... . +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6777888888888888899999999998 665666666543 2 345566665321 1 2778777774
Q ss_pred HHH-hhcCCchhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHH-hhcCCcc----hhhhHhcCChHHHHHhhcCCC
Q 008940 146 LGQ-FAATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGR-LAQDMHN----QAGIAHNGGLVPLLKLLDSKN 218 (548)
Q Consensus 146 L~~-l~~~~~~~~~~~~~-~g~v~~L~~ll~~~~~~v~~~a~~~L~~-l~~~~~~----~~~~~~~~~l~~L~~ll~~~~ 218 (548)
+.. +...++..+..+.+ .+.+..+..-|..+++++....+.+|.. +..+... +..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 444 44445556655544 6678889999999889999999999985 4444322 334455566777888777766
Q ss_pred h----hHHHHHHHHHHhcccCCcch
Q 008940 219 G----SLQHNAAFALYGLADNEDNV 239 (548)
Q Consensus 219 ~----~v~~~a~~~L~~l~~~~~~~ 239 (548)
+ .+...+-..|..+|.++..-
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~G 242 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHG 242 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcc
Confidence 6 88888889999999877653
No 232
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.16 E-value=0.54 Score=41.24 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=72.7
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHHhcc---------CChHHHHHHHHHHHHhhcC
Q 008940 41 PPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS---------EDSAIHYEAVGVIGNLVHS 110 (548)
Q Consensus 41 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~ll~~---------~~~~v~~~a~~~L~~l~~~ 110 (548)
..+++.+.+..... ..+..|....+. .......+++.||+..|+.+|.. .+......++++|..+...
T Consensus 69 ~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~ 146 (187)
T PF06371_consen 69 EWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT 146 (187)
T ss_dssp HHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc
Confidence 34566665544322 333333333322 23456778888999999998861 3457888999999999766
Q ss_pred ChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhh
Q 008940 111 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 150 (548)
Q Consensus 111 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 150 (548)
.......+...+++..++..+.+++..++..++..|..+|
T Consensus 147 ~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 147 KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 5555455555789999999999999999999999998886
No 233
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.03 E-value=2.4 Score=41.95 Aligned_cols=140 Identities=16% Similarity=0.072 Sum_probs=84.4
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhh-ccCCHHHHHHHHHHHHHhhccCcchhhHhh-hcCChHHH
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTL 85 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L 85 (548)
++..++..|++.|.+.+..-|....... .-.+..++.-| ...+.+|+..++.+|..+.. ...+..... =.++.-.+
T Consensus 270 p~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~-~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 270 PSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLE-KASNDDLESYLLNIALRL 347 (533)
T ss_pred chhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH-hhhhcchhhhchhHHHHH
Confidence 3447899999999999976455443333 34455566544 45569999999999988875 222222211 11234456
Q ss_pred HHHhccCChHHHHHHHHHHHHhhcCCh-hHHHHHHh--cCChHHHHHhhhcCChHHHHHHHHHHHHhh
Q 008940 86 ILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLA--AGALQPVIGLLSSCCSESQREAALLLGQFA 150 (548)
Q Consensus 86 v~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 150 (548)
..+..+.+++.|..+..+++.|+.... ..++.+.+ .+....++-.+.++++.+.. |+......|
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c 414 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTC 414 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhc
Confidence 677788999999999999888864322 22222221 22334555566677776544 344333333
No 234
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.97 Score=45.25 Aligned_cols=124 Identities=16% Similarity=0.168 Sum_probs=74.9
Q ss_pred CChHHHHHH-hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCchhH
Q 008940 80 NALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCK 157 (548)
Q Consensus 80 g~i~~Lv~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~ 157 (548)
|++..++.. ..+.+.++|+.|+-+|+-+|-++++ .++..+++|.. .++.++...+.+|+-.|.+.-..
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~- 620 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK- 620 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-
Confidence 455666655 5577888888888888877765444 45566666654 45677777777777777553221
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCCh
Q 008940 158 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG 219 (548)
Q Consensus 158 ~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 219 (548)
-++..|-.++.+.+.-||+.|+-+++-+......+-.-.-.+....+.+++.+++.
T Consensus 621 ------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 621 ------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred ------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 13455666667777778888887777766333221111111344456666655543
No 235
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.96 E-value=2.4 Score=37.12 Aligned_cols=110 Identities=19% Similarity=0.219 Sum_probs=70.7
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHH-HhhcCChhHHHHHHhcCChHHHHHhhhc---------CChHHHHHHHHHHHHhh
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIG-NLVHSSPNIKKEVLAAGALQPVIGLLSS---------CCSESQREAALLLGQFA 150 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~g~i~~L~~ll~~---------~~~~~~~~a~~~L~~l~ 150 (548)
....+++.+.+..... ..+.-|. .|-......-+.+++.||+..|+.+|.. .+......++.+|..+.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4556677776544332 1111121 1212223445677778999999988864 23467788899999997
Q ss_pred cCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940 151 ATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 192 (548)
Q Consensus 151 ~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 192 (548)
.........+...+++..+...|.+++..++..++..|..+|
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 554343444445889999999999999999999999999887
No 236
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=92.91 E-value=16 Score=39.60 Aligned_cols=124 Identities=16% Similarity=0.191 Sum_probs=81.5
Q ss_pred HhhhcCChHHHHHHhccC-----ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh----cCC----hHHHHH
Q 008940 75 QIVECNALPTLILMLRSE-----DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS----SCC----SESQRE 141 (548)
Q Consensus 75 ~~~~~g~i~~Lv~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~----~~~~~~ 141 (548)
.+.+.|++..++.++.+- ...+....+.+|...+.. +.+|+.+.+.|+++.|+..+. ... .++.+.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence 344678999999998742 334555566666666554 788999999999999988774 333 556666
Q ss_pred HHHHHHHhhcCCchhHHH----HH--------hcCChHHHHHhhCC----CCHHHHHHHHHHHHHhhcCCcchh
Q 008940 142 AALLLGQFAATDSDCKVH----IV--------QRGAVRPLIEMLQS----PDVQLREMSAFALGRLAQDMHNQA 199 (548)
Q Consensus 142 a~~~L~~l~~~~~~~~~~----~~--------~~g~v~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~ 199 (548)
...++..+...-...... .. ...-+..|++.+.+ .++.+....++.|-+|+.+.....
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m 264 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM 264 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH
Confidence 666665554321110000 00 11236677777765 368899999999999998876643
No 237
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.49 Score=47.26 Aligned_cols=125 Identities=21% Similarity=0.258 Sum_probs=84.3
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHh-hhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 165 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 165 (548)
+++.+.++.+|...+..++.--.+.. +.|++..++.. .++.+.++++.|+-+|+-+|..++. .
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~ 586 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------L 586 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------h
Confidence 44445555566555544433211111 24567777777 6778899999999999999876544 3
Q ss_pred hHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940 166 VRPLIEML-QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 233 (548)
Q Consensus 166 v~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 233 (548)
+...+++| .+.++.||...+.+|+-.|.+...+. ++..|-.+..+.+.-+++.|+-+++-+.
T Consensus 587 lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 587 LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 33444444 45788999999999998887765442 3555667777888888888888887764
No 238
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=92.51 E-value=0.46 Score=48.85 Aligned_cols=186 Identities=16% Similarity=0.194 Sum_probs=128.4
Q ss_pred HhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhH
Q 008940 35 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 114 (548)
Q Consensus 35 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 114 (548)
...+++|.|+++++..|..+|..-+.-+-+...+ -...+.+.-+.+.+..-+.+.++.+|+..+..+..|+.- .
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k---L 400 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK---L 400 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh---h
Confidence 3446899999999999999998887777766642 334555666899999999999999999999999988742 2
Q ss_pred HHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC-hHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA-VRPLIEMLQSPDVQLREMSAFALGRLAQ 193 (548)
Q Consensus 115 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~-v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 193 (548)
-........+..+.++-.+.+..++.+..-+|+.++...... ++.++ +..+...++++-+..|..+..+++....
T Consensus 401 ~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~----~R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 401 SKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred chhhhcHHHHHHHHhhCccccCcccccceeeecccccccchh----hhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 222333345556666656667788888888888887543222 13333 3455556777777788888888877765
Q ss_pred CCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhc
Q 008940 194 DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 232 (548)
Q Consensus 194 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 232 (548)
..+... +....++.+..+.-+++..++..|-.++...
T Consensus 477 ~~~~~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 477 YFDQSE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred ccchhh--hhhhccccccccccCcccchhhHHHHHHHHH
Confidence 544322 2224566677777777777777777666554
No 239
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=92.50 E-value=0.31 Score=35.56 Aligned_cols=49 Identities=33% Similarity=0.399 Sum_probs=32.6
Q ss_pred cchHhHHHHHHHHHHhChHhHHHHHHHHHHhcC---CHhhHHHHHHHHHHcC
Q 008940 446 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSEAFH 494 (548)
Q Consensus 446 ~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l---~~~n~~~~~~~a~~~~ 494 (548)
++...+.+|+.+|++++++.|...|+..+...+ +++..-.++.....+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t 62 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLT 62 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSS
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Confidence 466789999999999999999999999886655 4444444444444333
No 240
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=92.39 E-value=5.1 Score=37.32 Aligned_cols=205 Identities=13% Similarity=0.117 Sum_probs=138.5
Q ss_pred HHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH-----HhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 008940 116 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI-----VQRGAVRPLIEMLQSPDVQLREMSAFALGR 190 (548)
Q Consensus 116 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-----~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~ 190 (548)
+.+.+.|.+..+++.+..-+-+.+..+..+..++-...-..+... .+...+..|+.--.. .+++...+-..|..
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence 566778999999999999888888888888888864432222211 222344444444111 36666666666777
Q ss_pred hhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc-CCcchHHHHHhcCcccccccchhhhhhhHHHHHHH
Q 008940 191 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 269 (548)
Q Consensus 191 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~ 269 (548)
+.....-.+.+..+..+.....+...++-++...|..+...+.. +......+....
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n----------------------- 208 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRN----------------------- 208 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhC-----------------------
Confidence 66666666677777788888888888888888888887777744 332222221111
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccc----eeeecCCchHHHHHhhcCCCCccchhhHHHHH
Q 008940 270 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR----TIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 345 (548)
Q Consensus 270 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 345 (548)
.+.-+.+..-.++.+++.-.+..+...++.+..+..+. +.+.....+..+..+|+++...+|..|-....
T Consensus 209 ------~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFK 282 (342)
T KOG1566|consen 209 ------YDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFK 282 (342)
T ss_pred ------hhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHH
Confidence 11112233446788899999999999999997665443 45555677889999999999999999987766
Q ss_pred HHhhh
Q 008940 346 KLANK 350 (548)
Q Consensus 346 ~l~~~ 350 (548)
-...+
T Consensus 283 vfvAn 287 (342)
T KOG1566|consen 283 VFVAN 287 (342)
T ss_pred HHhcC
Confidence 55443
No 241
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.36 E-value=0.48 Score=33.83 Aligned_cols=66 Identities=12% Similarity=0.243 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcchhhhHhcC
Q 008940 139 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNG 205 (548)
Q Consensus 139 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 205 (548)
.+.+.|+++++++. +.....+.+.++++.++++... +...+|-.+..+|+-++...+..+.+.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 47789999999865 5555666678999999999875 667899999999999998887777666554
No 242
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=92.30 E-value=5.6 Score=43.04 Aligned_cols=185 Identities=12% Similarity=0.092 Sum_probs=124.3
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhh-hcCChHHHHHHh-ccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKE 117 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~Lv~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 117 (548)
.+.+-.-+.+.++.-|..|+..+...... +. ..... ..|.+..++... .+.|..+...++.+|..++...... ..
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e-~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~ 331 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEE-AK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FR 331 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhc-cc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hH
Confidence 34455556678899999999999998863 33 11111 123333444433 3668888899999999998655443 22
Q ss_pred HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940 118 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 197 (548)
Q Consensus 118 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 197 (548)
-...+..|.++..+......++..+..++...+...+ .....+.++..+++++|..+..+...+.........
T Consensus 332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 3335678899999988888888777777766653211 124678889999999999998877777666544332
Q ss_pred --hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940 198 --QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 198 --~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 234 (548)
...-.-.+.++.++....+.+.+|+..|..+++.+..
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 1111122456667777778889999999888887754
No 243
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.28 E-value=3 Score=41.82 Aligned_cols=143 Identities=16% Similarity=0.148 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCC----HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
+..+..|...|..++ .++.....+++..++..|.+++.+++ .++....++++..+-.+.- .........++...
T Consensus 97 ~~~~~~a~k~l~sls-~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vsW~~~~~~fV~~~ 174 (713)
T KOG2999|consen 97 NISKMEALKELDSLS-LDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VSWESVSNDFVVSM 174 (713)
T ss_pred cHHHHHHHHHHhhcc-ccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-eeeeecccHHHHHH
Confidence 444555788888888 57788888888999999999998765 4666777777777765422 22222222334444
Q ss_pred HHHhc--cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc
Q 008940 86 ILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 154 (548)
Q Consensus 86 v~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 154 (548)
..+.+ ..+..+-..|+..|-++...++..++.+.++-.+..++..++..+..+...|...+..+....+
T Consensus 175 a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a~ 245 (713)
T KOG2999|consen 175 ASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKAP 245 (713)
T ss_pred HHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhCC
Confidence 44443 3466788889999999998888888999999999999999999999888887776666654443
No 244
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=92.22 E-value=2.3 Score=45.82 Aligned_cols=171 Identities=17% Similarity=0.179 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhcCCc---hHHHHhh-ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 11 SVIRRAADAITNLAHENSSIKTRVRMEGGI---PPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i---~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
.-+..|+..+.....+.. . ....+.. ..++... .+.|..+...|+..|..++.......... ..+..+.++
T Consensus 268 K~R~Eale~l~~~l~e~~--~--~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~-~~~v~p~ll 342 (815)
T KOG1820|consen 268 KDRKEALEELVAILEEAK--K--EIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY-AKNVFPSLL 342 (815)
T ss_pred HHHHHHHHHHHHHHhccc--c--ccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH-HHhhcchHH
Confidence 446778888888874333 1 1223333 3333322 45678888899999999987544432222 235788899
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc-hhHHHHHhcCC
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGA 165 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~ 165 (548)
+-+.+....++..+..++-.++...+. ....+.+...+.+.++..+..+...+........ .....-.-.++
T Consensus 343 d~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l 415 (815)
T KOG1820|consen 343 DRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTL 415 (815)
T ss_pred HHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHH
Confidence 999988888888888887776543222 3457788889999999999887777766654433 22222222467
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940 166 VRPLIEMLQSPDVQLREMSAFALGRLAQ 193 (548)
Q Consensus 166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 193 (548)
++.++....+.+.+||..|..++..+-.
T Consensus 416 ~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 416 VPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred hHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 8888888889999999999999888753
No 245
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=91.82 E-value=21 Score=38.41 Aligned_cols=155 Identities=15% Similarity=0.069 Sum_probs=106.6
Q ss_pred CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc--cCChHHHHHHHHHHHHhhcCChhHH
Q 008940 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIK 115 (548)
Q Consensus 38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~ 115 (548)
+++..|.++....+.++.-.-..+|...+..+++....+ +..+.|.++.+.. ++++.+...+-.++-.++.. .++.
T Consensus 530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~-~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~ 607 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASM-ESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANY 607 (1005)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhh-hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhh
Confidence 455566666667778888888999999998766655444 4446776666554 56777777777777777542 2222
Q ss_pred HHHHhcCChHHHHHhhhcCC----hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHH
Q 008940 116 KEVLAAGALQPVIGLLSSCC----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGR 190 (548)
Q Consensus 116 ~~~~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~ 190 (548)
. -.....||.++..+..+. ......++..|..+.+..+.......-.-+.|++.++.- ++|.++...+-.||..
T Consensus 608 g-~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra 686 (1005)
T KOG2274|consen 608 G-PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRA 686 (1005)
T ss_pred c-chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHH
Confidence 2 223457999999998766 556677777888777766554444444457777777754 4677888899999998
Q ss_pred hhcCC
Q 008940 191 LAQDM 195 (548)
Q Consensus 191 l~~~~ 195 (548)
+....
T Consensus 687 ~Is~~ 691 (1005)
T KOG2274|consen 687 LISVT 691 (1005)
T ss_pred HHhcC
Confidence 87654
No 246
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=2.1 Score=33.68 Aligned_cols=89 Identities=18% Similarity=0.202 Sum_probs=63.9
Q ss_pred eCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccc---------------------
Q 008940 387 VEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVD--------------------- 445 (548)
Q Consensus 387 ~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~--------------------- 445 (548)
.+|+.|.+.+. .|-+|-..+.|+... . ...-.|..+++...+|..+++|+-..+-.
T Consensus 9 ~dge~F~vd~~-iAerSiLikN~l~d~-~-~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr 85 (158)
T COG5201 9 IDGEIFRVDEN-IAERSILIKNMLCDS-T-ACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDR 85 (158)
T ss_pred cCCcEEEehHH-HHHHHHHHHHHhccc-c-ccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHH
Confidence 36778888775 466888888877421 1 12225777899999999999999643221
Q ss_pred ----cchHhHHHHHHHHHHhChHhHHHHHHHHHHhcC
Q 008940 446 ----VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 478 (548)
Q Consensus 446 ----~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l 478 (548)
++.+.+.++.-+|+++.++.|.+.|+..+...+
T Consensus 86 ~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemi 122 (158)
T COG5201 86 FFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMI 122 (158)
T ss_pred HHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 123567788889999999999999988775544
No 247
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.76 E-value=5.9 Score=44.88 Aligned_cols=144 Identities=11% Similarity=0.123 Sum_probs=98.7
Q ss_pred CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 117 (548)
Q Consensus 38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 117 (548)
+.+..++..+..+...+|.+|+++|..+...++.... ...+-..+-.-+.+....||+.|+..++......++....
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 4567788888988899999999999999985554321 1122333445566778899999999999887665654333
Q ss_pred HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhh---CCCCHHHHHHHHHHHHHhhcC
Q 008940 118 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---QSPDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 118 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll---~~~~~~v~~~a~~~L~~l~~~ 194 (548)
. ...+..-..+....||+.+..++..+|...|.... .+.....++ .++...++..+..++.++...
T Consensus 893 y-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 893 Y-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred H-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 2 23455555667788999999999999977665432 223333333 344445888888888888754
Q ss_pred C
Q 008940 195 M 195 (548)
Q Consensus 195 ~ 195 (548)
+
T Consensus 962 p 962 (1692)
T KOG1020|consen 962 P 962 (1692)
T ss_pred C
Confidence 4
No 248
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=91.69 E-value=6.1 Score=38.78 Aligned_cols=82 Identities=17% Similarity=0.259 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
....+|+.++-.|..-+ .++..+..+.+.|.+..+++.+.. ++..+...++.++..+...+......+...+....++
T Consensus 34 ~~~s~Rr~sll~La~K~-~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~ 112 (361)
T PF07814_consen 34 SSSSVRRSSLLELASKC-ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLLL 112 (361)
T ss_pred CCccHHHHHHHHHHHHh-CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHHH
Confidence 34477888877788888 689999999999999999998854 3332444444444444432344444444555666667
Q ss_pred HHhc
Q 008940 87 LMLR 90 (548)
Q Consensus 87 ~ll~ 90 (548)
.++.
T Consensus 113 ~Ll~ 116 (361)
T PF07814_consen 113 KLLK 116 (361)
T ss_pred HHhc
Confidence 7776
No 249
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.62 E-value=2.5 Score=47.60 Aligned_cols=144 Identities=15% Similarity=0.227 Sum_probs=97.5
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 160 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 160 (548)
.+..++..++.+...+|..|+++|.++...++.... ....-..+-.-+.+....|++.|+..++......++....
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q- 892 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ- 892 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH-
Confidence 566677788888899999999999999877665421 1122223334455667889999999999877555554333
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940 161 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 161 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 234 (548)
..+.+..-+.+....||..+.+.++.+|...+.-..+.+ ....++.-..+....++..++.++.++-.
T Consensus 893 ----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~--~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 893 ----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD--MCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred ----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH--HHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 345667777778889999999999999977765443332 22223333334445578888888877743
No 250
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=91.48 E-value=12 Score=34.97 Aligned_cols=202 Identities=14% Similarity=0.134 Sum_probs=137.2
Q ss_pred HHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhh-----cCChHHHHHHhccC-ChHHHHHHHHHHH
Q 008940 32 TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-----CNALPTLILMLRSE-DSAIHYEAVGVIG 105 (548)
Q Consensus 32 ~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-----~g~i~~Lv~ll~~~-~~~v~~~a~~~L~ 105 (548)
..+.++|....|++.+...+.+.+..++....++-..+-..+...++ ..++..|+.- .. .+++...+...|.
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHH
Confidence 45667788999999998888888888888888887632222222111 1233333333 12 2444444444444
Q ss_pred HhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC----hHHHHHhhCCCCHHHH
Q 008940 106 NLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA----VRPLIEMLQSPDVQLR 181 (548)
Q Consensus 106 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~----v~~L~~ll~~~~~~v~ 181 (548)
.-... +...+.+....-.......++.+.-++...|..+...+..........+...+. .+.--.++++++--++
T Consensus 151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk 229 (342)
T KOG1566|consen 151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK 229 (342)
T ss_pred HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehH
Confidence 44333 555677777778888888888888888888888877776554444444444332 3335667888888899
Q ss_pred HHHHHHHHHhhcCCcchhhh----HhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940 182 EMSAFALGRLAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 236 (548)
Q Consensus 182 ~~a~~~L~~l~~~~~~~~~~----~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 236 (548)
..+...|+.+-.+.++...+ .....+..++.+|+++...+|..|-.+..-...++
T Consensus 230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 99999999999888775443 33356788999999999999999998888886654
No 251
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.45 E-value=2.3 Score=46.68 Aligned_cols=180 Identities=13% Similarity=0.126 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHHhhhCh-hhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhcc----CcchhhHhhhcCChHH
Q 008940 10 NSVIRRAADAITNLAHENS-SIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK----NDENKNQIVECNALPT 84 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~g~i~~ 84 (548)
...+...+.+|..+-+..+ +....+. ..|+.++-.++..+...|..|..+|..++.. ++.+-. ....+..
T Consensus 711 ~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~---~~~~lne 785 (1176)
T KOG1248|consen 711 SPAQASRLKCLKRLLKLLSAEHCDLIP--KLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP---ASAILNE 785 (1176)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc---hHHHHHH
Confidence 3567777888888876544 4444333 2344444444777888899998888888720 000000 0113444
Q ss_pred HHHHhccC----ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940 85 LILMLRSE----DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 160 (548)
Q Consensus 85 Lv~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 160 (548)
++..+..+ ...+....+-++..+.....+.-....-.+.+..+.-++.+..++++..|+..+..++...|.....-
T Consensus 786 fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~ 865 (1176)
T KOG1248|consen 786 FLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP 865 (1176)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 44444322 22222222444444443322222222234566677777888999999999999999998877766555
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940 161 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 161 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 194 (548)
....+++.+..+..+....++...-..|-.|+..
T Consensus 866 ~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 866 HLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 5566888888888877777887776666666643
No 252
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.25 E-value=0.74 Score=34.75 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=61.3
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHh
Q 008940 41 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 120 (548)
Q Consensus 41 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 120 (548)
...+..++++.+.+|..++..|+.+..... ....-..+++..+...|+++++-+-..|+..|..|+...++
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~------- 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD------- 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-------
Confidence 345667788889999999999999998433 22222345777888899999999999999999999876554
Q ss_pred cCChHHHHHhhhc
Q 008940 121 AGALQPVIGLLSS 133 (548)
Q Consensus 121 ~g~i~~L~~ll~~ 133 (548)
.+++.|++...+
T Consensus 77 -~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 -EVLPILLDEYAD 88 (92)
T ss_pred -HHHHHHHHHHhC
Confidence 245566555443
No 253
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.73 E-value=1.3 Score=41.07 Aligned_cols=140 Identities=18% Similarity=0.217 Sum_probs=97.0
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 119 (548)
+...+..|.+.+++....++..+..++...++....+... ++-.+++-+++....+-+.|+.++..+...-.+....
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3456677888889999999999999998666665555544 5667788888889999999999999997542222122
Q ss_pred hcCChHHHHH-hhhcC---ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940 120 AAGALQPVIG-LLSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 192 (548)
Q Consensus 120 ~~g~i~~L~~-ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 192 (548)
-+..++. ++... +.=+++.|-.+|..+...-.. ..+++.|+..+++.++.++..++.++.+..
T Consensus 167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 2333333 33322 233778888888888643222 235677888889999999988877766654
No 254
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.54 E-value=6.4 Score=40.80 Aligned_cols=181 Identities=17% Similarity=0.157 Sum_probs=115.2
Q ss_pred hHHHHhhcc----CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChhHH
Q 008940 41 PPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIK 115 (548)
Q Consensus 41 ~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~ 115 (548)
|...+...+ +|+.++..|.-.|..+-.-+.+. .. .-+|.|+..+. +++|.+|..|+-.|+.++.......
T Consensus 895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~f----c~-ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~ 969 (1128)
T COG5098 895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEF----CS-EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTA 969 (1128)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHH----HH-HHHHHHHHHHhhCCCcceeccceeeccccceehhhhh
Confidence 444445544 67888888888877664322221 11 24788888887 8999999999988888865433222
Q ss_pred HHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940 116 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 195 (548)
Q Consensus 116 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 195 (548)
+. .-..|.+-|.+.+..+++.|..++..|.-.+ ++--.|-++.+..+|.++|.++...|--.+..++..+
T Consensus 970 de-----~t~yLyrrL~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 970 DE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred HH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 22 2346667777888999999999999986432 1222578888999999999999999888888888554
Q ss_pred cchhhhHhcCChHHHHHhhcCC----ChhHHHHHHHHHHhcccCCcchHHH
Q 008940 196 HNQAGIAHNGGLVPLLKLLDSK----NGSLQHNAAFALYGLADNEDNVADF 242 (548)
Q Consensus 196 ~~~~~~~~~~~l~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~ 242 (548)
.. +..|.++. ..-+.++ +.. -......|..+...+...+++
T Consensus 1040 Nt----~yn~fidi-fs~ls~~ae~g~e~-fk~II~FLt~fI~kerh~kql 1084 (1128)
T COG5098 1040 NT----MYNGFIDI-FSTLSSDAENGQEP-FKLIIGFLTDFISKERHQKQL 1084 (1128)
T ss_pred cc----hhhhhHHH-HHHcCchhhcCCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 32 23344443 3333322 222 334455555555544444443
No 255
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=90.18 E-value=3.3 Score=43.03 Aligned_cols=137 Identities=18% Similarity=0.127 Sum_probs=94.6
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhh-cCCChhHHHHHHHHHHhcccCCcc
Q 008940 160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDN 238 (548)
Q Consensus 160 ~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~ 238 (548)
-+...++|.|...+++.+..+++.++..+..++..-+ ...+..-.+|.+..+. ++.+..++.+++.++..+...-+
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD- 461 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD- 461 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH-
Confidence 4456788888888999999999999999999886655 3445555667666653 45677888888888888872111
Q ss_pred hHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec
Q 008940 239 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID 318 (548)
Q Consensus 239 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~ 318 (548)
. ..+ -+.+.++....+..++.+.....++..++.......+.+.-
T Consensus 462 --~---~~v------------------------------~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~ 506 (700)
T KOG2137|consen 462 --K---AAV------------------------------LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMA 506 (700)
T ss_pred --H---HHh------------------------------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeeh
Confidence 1 010 01233444555557888888888888888765554467777
Q ss_pred CCchHHHHHhhcCCCC
Q 008940 319 GGGLELLLGLLGSTNP 334 (548)
Q Consensus 319 ~~~i~~L~~ll~~~~~ 334 (548)
++.+|.++.+...+.-
T Consensus 507 ~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 507 ENVLPLLIPLSVAPSL 522 (700)
T ss_pred hhhhhhhhhhhhcccc
Confidence 8899999888876543
No 256
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.81 E-value=2.1 Score=37.56 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc-----CChHHHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHH
Q 008940 55 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVI 128 (548)
Q Consensus 55 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~-----~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~ 128 (548)
...|+..|.-+++ .|+.+..+.+..+--.+.++|.. +.+.+|..++.+++.+..++ +..-..+....++|.++
T Consensus 117 vcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 3556667777776 69999999998776667777762 34578889999999997654 44556666778999999
Q ss_pred HhhhcCChHHHHHHHHHHHHhhcCCchhHHH---HHh----cCChHHHH-HhhCCCCHHHHHHHHHHHHHhhcCCcchhh
Q 008940 129 GLLSSCCSESQREAALLLGQFAATDSDCKVH---IVQ----RGAVRPLI-EMLQSPDVQLREMSAFALGRLAQDMHNQAG 200 (548)
Q Consensus 129 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~----~g~v~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 200 (548)
+.+..+++-.+..++.++..+..++...+-. +-. ..++..++ ++...+...+.+.+.++--.|+.++..|..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l 275 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL 275 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence 9999888777777888887776443221111 100 11222222 223345556777777777777766655543
No 257
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.44 E-value=12 Score=32.72 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=86.8
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 118 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 118 (548)
.++.++++..+++..++..|+..+..+....--+- ...+|.++.+..++++.++..|...+..+....+..-..-
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45677888888999999999999998886311111 1258889999999999999999999999976544432222
Q ss_pred HhcCChHHHHHhhhc---CCh-HH---HHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCC--------CHHHHHH
Q 008940 119 LAAGALQPVIGLLSS---CCS-ES---QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--------DVQLREM 183 (548)
Q Consensus 119 ~~~g~i~~L~~ll~~---~~~-~~---~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~--------~~~v~~~ 183 (548)
... ++..-.++-.. +.. .. .......+..+...+...|..+ +..++..+... .+.-...
T Consensus 84 ~~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~ 157 (187)
T PF12830_consen 84 YSE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDF 157 (187)
T ss_pred HHH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHH
Confidence 222 23333333221 111 11 3444555666665555555544 34444444332 2334455
Q ss_pred HHHHHHHhhcC
Q 008940 184 SAFALGRLAQD 194 (548)
Q Consensus 184 a~~~L~~l~~~ 194 (548)
...+..||+.-
T Consensus 158 ~~Fla~nLA~l 168 (187)
T PF12830_consen 158 LLFLAENLATL 168 (187)
T ss_pred HHHHHHHHhcC
Confidence 56666666643
No 258
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.33 E-value=3.5 Score=42.71 Aligned_cols=105 Identities=17% Similarity=0.158 Sum_probs=74.7
Q ss_pred cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH
Q 008940 37 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 116 (548)
Q Consensus 37 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 116 (548)
.|.+..+++...+.+..||.+.+..|..+... ......-+-.+....+..-+.+..+.+|.+|+.+|..+-.+..+-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence 36677788888889999999999999999963 333333333446667777777889999999999999996332111
Q ss_pred HHHhcCChHHHHHhhh-cCChHHHHHHHHHHH
Q 008940 117 EVLAAGALQPVIGLLS-SCCSESQREAALLLG 147 (548)
Q Consensus 117 ~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~ 147 (548)
+..++..+..+++ +++++|++.+...+.
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 1245667777776 466889887665443
No 259
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=89.30 E-value=20 Score=35.68 Aligned_cols=130 Identities=16% Similarity=0.198 Sum_probs=93.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhhcCCh---hHHHHHHhcCChHHHHHhhhcCC-----hH--HHHHHHHHHHHhhcCC
Q 008940 84 TLILMLRSEDSAIHYEAVGVIGNLVHSSP---NIKKEVLAAGALQPVIGLLSSCC-----SE--SQREAALLLGQFAATD 153 (548)
Q Consensus 84 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~~~-----~~--~~~~a~~~L~~l~~~~ 153 (548)
.+..+++..+.+-|-.|+.....++.+.+ ..++.+.+.-+.+.+-+++.+.+ ++ .+..++..|..+|+.
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~- 93 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV- 93 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-
Confidence 46677777788888888888888876543 23667888778888888887632 22 445567788888865
Q ss_pred chhHH--HHHhcCChHHHHHhhCC-CCHH------HHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcC
Q 008940 154 SDCKV--HIVQRGAVRPLIEMLQS-PDVQ------LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS 216 (548)
Q Consensus 154 ~~~~~--~~~~~g~v~~L~~ll~~-~~~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~ 216 (548)
++... .++ ..+|.+...+.. .+++ +.+.+-.+|..++..+.....++..|+++.+.++-.-
T Consensus 94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC
Confidence 32221 222 367888888864 2332 7788999999999998888889999999998866543
No 260
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=89.14 E-value=8.7 Score=33.27 Aligned_cols=143 Identities=15% Similarity=0.172 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhhcc-Ccchh----hHhh------hcCChHHHH-HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhc
Q 008940 54 VQRAAAGALRTLAFK-NDENK----NQIV------ECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 121 (548)
Q Consensus 54 v~~~a~~~L~~l~~~-~~~~~----~~~~------~~g~i~~Lv-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 121 (548)
+|..|+.+|..++.. ++..- ..+. ..+.-+.|+ -++.|+++.+|..|+.++..+-.+....-...-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 577777888777763 11110 0111 122333444 45678999999999999999986643321111111
Q ss_pred C-------------------ChHHHHHhhhcC-ChHHHHHHHHHHHHhhcCCchhHHHH-HhcCChHHHHHhhCCCCHHH
Q 008940 122 G-------------------ALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHI-VQRGAVRPLIEMLQSPDVQL 180 (548)
Q Consensus 122 g-------------------~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~g~v~~L~~ll~~~~~~v 180 (548)
. .-..|+..++.+ +..+......++..+....|..+-.. .-..++..+..++.+.|+.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 123444445444 46677788889999988777655421 11234445555667789999
Q ss_pred HHHHHHHHHHhhcCCc
Q 008940 181 REMSAFALGRLAQDMH 196 (548)
Q Consensus 181 ~~~a~~~L~~l~~~~~ 196 (548)
+..++.+++.+....+
T Consensus 162 ~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 162 RVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999998875543
No 261
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.05 E-value=3.6 Score=42.61 Aligned_cols=103 Identities=20% Similarity=0.166 Sum_probs=73.2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHH
Q 008940 164 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI 243 (548)
Q Consensus 164 g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 243 (548)
|.+..++.-..+++..||..++..|.-+.........-+-.+....+..-+.+..+.|+..|+.+|+.+-..+..
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d----- 159 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD----- 159 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-----
Confidence 455555555667888999999999999887554455555556667777778888999999999999999643221
Q ss_pred HhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHh
Q 008940 244 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALAL 303 (548)
Q Consensus 244 ~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL 303 (548)
-+..++..+..+++. ++++||..|+..+
T Consensus 160 --------------------------------ee~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 160 --------------------------------EECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred --------------------------------CcccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 012355666777776 7788888765544
No 262
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.52 E-value=3.1 Score=44.56 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=105.8
Q ss_pred HHHHHhhhChhhHHHHHhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChH--HHHHHhccCCh-
Q 008940 19 AITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALP--TLILMLRSEDS- 94 (548)
Q Consensus 19 ~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~--~Lv~ll~~~~~- 94 (548)
+|.+.+..+++....+.+.|++..+.+.++. ...+.+..++..+.+++.. .+.+........+. .+-.++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~-~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEV-LELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 6778898999999999999999999999985 4588999999999999973 33333222221222 33334444444
Q ss_pred HHHHHHHHHHHHhhcCChh---------HHHHHHh--------------cCChHH-HHHhhhc-CChHHHHHHHHHHHHh
Q 008940 95 AIHYEAVGVIGNLVHSSPN---------IKKEVLA--------------AGALQP-VIGLLSS-CCSESQREAALLLGQF 149 (548)
Q Consensus 95 ~v~~~a~~~L~~l~~~~~~---------~~~~~~~--------------~g~i~~-L~~ll~~-~~~~~~~~a~~~L~~l 149 (548)
+.-..++.+|..+..++++ ..+.+.+ ...+.. +..++.. ..+..+.+|+|++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 7777888888888765331 1111111 111222 4444443 4467889999999999
Q ss_pred hcCCchhHHHHHhcCChHHHHHhhCC
Q 008940 150 AATDSDCKVHIVQRGAVRPLIEMLQS 175 (548)
Q Consensus 150 ~~~~~~~~~~~~~~g~v~~L~~ll~~ 175 (548)
...++++...+.+.|+++.+...-..
T Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (699)
T KOG3665|consen 653 LEQNKEYCKLVRESNGFELIENIRVL 678 (699)
T ss_pred HHcChhhhhhhHhccchhhhhhcchh
Confidence 99988888888888888877666443
No 263
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=88.32 E-value=16 Score=37.91 Aligned_cols=166 Identities=21% Similarity=0.140 Sum_probs=93.9
Q ss_pred hhccCCHHHHHHHHHHHHHhhccCcchhhHhhh---cCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhc-
Q 008940 46 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE---CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA- 121 (548)
Q Consensus 46 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~- 121 (548)
.+..-..+.+.-|+-+|+.+..+...+-..... ...+..++..++ .++.-+..++++|.|+..+ +..++.+...
T Consensus 552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~ 629 (745)
T KOG0301|consen 552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRL 629 (745)
T ss_pred HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHH
Confidence 333445677888888888888753333332221 224445555555 5678888999999999877 5555555443
Q ss_pred -CChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcCC
Q 008940 122 -GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQDM 195 (548)
Q Consensus 122 -g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~ 195 (548)
..+..+.+.-..++..++...+....|.+. ...+.-.+.+..+.+...+.. ++-+.....+.||++|+..+
T Consensus 630 ~~i~~~~~~~~s~~~knl~ia~atlaln~sv---~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 630 ESILDPVIEASSLSNKNLQIALATLALNYSV---LLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHHHHHH---HHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 122222222222333444333333333321 011111124555555555542 23345667788999999988
Q ss_pred cchhhhHhcCChHHHHHhhcC
Q 008940 196 HNQAGIAHNGGLVPLLKLLDS 216 (548)
Q Consensus 196 ~~~~~~~~~~~l~~L~~ll~~ 216 (548)
....++...-.+..+..-+++
T Consensus 707 ~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 707 ASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHHHHhcCHHHHHHHHHH
Confidence 887777777777777777664
No 264
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=88.23 E-value=27 Score=34.36 Aligned_cols=150 Identities=14% Similarity=0.127 Sum_probs=79.3
Q ss_pred HHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhh---CCCCHHHHHHHHHHHHHh
Q 008940 116 KEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---QSPDVQLREMSAFALGRL 191 (548)
Q Consensus 116 ~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll---~~~~~~v~~~a~~~L~~l 191 (548)
..+.+..-...+-+-+..++ ..-++.|+..|..++...+.....++. +.+..++.-. .+.++.-+..|+..++.+
T Consensus 204 ~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~al 282 (370)
T PF08506_consen 204 EELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGAL 282 (370)
T ss_dssp HHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHH
Confidence 44445555555555555444 345667777888887442222111111 2233222211 135677888999999999
Q ss_pred hcCCcchh-------------hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhh
Q 008940 192 AQDMHNQA-------------GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV 258 (548)
Q Consensus 192 ~~~~~~~~-------------~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~ 258 (548)
+....... .+.....+|.|. --.+..|-++..|+..+..+-..-. ...+
T Consensus 283 a~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~-~~~l---------------- 344 (370)
T PF08506_consen 283 ASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP-KEQL---------------- 344 (370)
T ss_dssp HBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHH----------------
T ss_pred HhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC-HHHH----------------
Confidence 96653321 111222223222 0113346677777777776654311 1111
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHh
Q 008940 259 QATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALAL 303 (548)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL 303 (548)
.++++.++.+|.+++.-|+..|+.++
T Consensus 345 -------------------~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 345 -------------------LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -------------------HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 23788999999999999999998875
No 265
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.01 E-value=1.4 Score=39.37 Aligned_cols=82 Identities=20% Similarity=0.181 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhhhChhhHHHHHhcCC-------chHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhhHhh-hcCCh
Q 008940 12 VIRRAADAITNLAHENSSIKTRVRMEGG-------IPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNAL 82 (548)
Q Consensus 12 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~-------i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i 82 (548)
-|+.|+.+|.+|+ -.+.|...+...+- +..|++++. ..++-.|+.|+..|.+++.++......+. +.+.+
T Consensus 140 PqrlaLEaLcKLs-V~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 140 PQRLALEALCKLS-VIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred HHHHHHHHHHHhh-eeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 3899999999999 45666666666664 344455554 45688999999999999997666554444 56889
Q ss_pred HHHHHHhccCCh
Q 008940 83 PTLILMLRSEDS 94 (548)
Q Consensus 83 ~~Lv~ll~~~~~ 94 (548)
..|+.++.+.+.
T Consensus 219 ~~Li~FiE~a~~ 230 (257)
T PF12031_consen 219 SHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999985533
No 266
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.73 E-value=0.65 Score=35.05 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=56.6
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 280 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 280 ~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
.+...+..+.++.+.+|..++..|.++..... .......+.+..+...++++++-|-.+|..+|..|+...
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 34556677788889999999999999987666 222333466788888999999999999999999998853
No 267
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=87.66 E-value=22 Score=34.47 Aligned_cols=158 Identities=14% Similarity=0.152 Sum_probs=111.9
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhc-cCcchhhHhhhc-CC-hHHHHHHhcc-----CC--------hHHHHHHHHH
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVEC-NA-LPTLILMLRS-----ED--------SAIHYEAVGV 103 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-g~-i~~Lv~ll~~-----~~--------~~v~~~a~~~ 103 (548)
+..+-+.|++....+...+++.|..++. .+......+.+. +. .+.+.+++.. .+ +.+|...++.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6677778888888888899999999998 554555555543 33 4456666631 11 2888888887
Q ss_pred HHHhhc-CChhHHHHHH-hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc----hhHHHHHhcCChHHHHHhhCCCC
Q 008940 104 IGNLVH-SSPNIKKEVL-AAGALQPVIGLLSSCCSESQREAALLLGQFAATDS----DCKVHIVQRGAVRPLIEMLQSPD 177 (548)
Q Consensus 104 L~~l~~-~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~~g~v~~L~~ll~~~~ 177 (548)
+..+.. .++..+..+. +.+.+..+.+-+..++.++....+.+|..-.-.++ ..+..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 766654 3455555555 55678888898988888888888888875332322 33345566678888999888777
Q ss_pred H----HHHHHHHHHHHHhhcCCcc
Q 008940 178 V----QLREMSAFALGRLAQDMHN 197 (548)
Q Consensus 178 ~----~v~~~a~~~L~~l~~~~~~ 197 (548)
+ .+++.+-..|..+|.++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 6 8899999999999977654
No 268
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=87.37 E-value=4.6 Score=34.52 Aligned_cols=111 Identities=15% Similarity=0.187 Sum_probs=71.9
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhc--CChHHHHHHhccC-ChHHHHHHHHHHHHhh---cCCh
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLRSE-DSAIHYEAVGVIGNLV---HSSP 112 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~Lv~ll~~~-~~~v~~~a~~~L~~l~---~~~~ 112 (548)
.+..+..+|++.++.-|..++..+...+..++ .+.+.+. ..+..++..|+.+ ...+++.++.+|..|. .+.+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34567788899999999999999999986432 3444343 2578888999865 4567888888887774 3445
Q ss_pred hHHHHHHhc---CChHHHHHhhhcCChHHHHHHHHHHHHhhcCC
Q 008940 113 NIKKEVLAA---GALQPVIGLLSSCCSESQREAALLLGQFAATD 153 (548)
Q Consensus 113 ~~~~~~~~~---g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 153 (548)
+..+.+... ++++.+++++++ ......++.+|..+....
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 544444433 334455555543 455566666666665443
No 269
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=87.34 E-value=2.6 Score=37.67 Aligned_cols=82 Identities=22% Similarity=0.257 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhhccCcchhhHhhhcCC-------hHHHHHHhc-cCChHHHHHHHHHHHHhhcCChhHH-HHHHhcCC
Q 008940 53 KVQRAAAGALRTLAFKNDENKNQIVECNA-------LPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGA 123 (548)
Q Consensus 53 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~-------i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~ 123 (548)
.-|..|+++|.+++- .+.|.+.+...+- +..|++++. .++...|+.|+-+|.+++..+.... ....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 458999999999997 5778877766543 444555665 4688899999999999998877654 55556789
Q ss_pred hHHHHHhhhcCC
Q 008940 124 LQPVIGLLSSCC 135 (548)
Q Consensus 124 i~~L~~ll~~~~ 135 (548)
|..|+.++.+.+
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999997644
No 270
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=87.31 E-value=0.6 Score=35.94 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=44.2
Q ss_pred CcchhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHH
Q 008940 3 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQR 56 (548)
Q Consensus 3 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~ 56 (548)
+..|+.++--+......+..|+ ..|+....+.+.|+++.|+.+|.++|.++..
T Consensus 53 P~KFmdSE~dLd~~Ik~l~~La-~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 53 PEKFMDSEVDLDEEIKKLSVLA-TAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHhHHHHHHHHHHHHHcc-CChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 3456777777788899999999 6788899999999999999999999876643
No 271
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=87.25 E-value=25 Score=32.64 Aligned_cols=159 Identities=21% Similarity=0.191 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhhcCCcch--------hhhHhcCChHHHHHhhcCCC----hhHHHHHHHHHHhcccCC--cchHHHHH
Q 008940 179 QLREMSAFALGRLAQDMHNQ--------AGIAHNGGLVPLLKLLDSKN----GSLQHNAAFALYGLADNE--DNVADFIR 244 (548)
Q Consensus 179 ~v~~~a~~~L~~l~~~~~~~--------~~~~~~~~l~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~--~~~~~~~~ 244 (548)
...+.+...|..|...+... -.+.-.+.+|.++.-+++++ ......++..|+.+|... .+..++..
T Consensus 77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~ 156 (262)
T PF14225_consen 77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILS 156 (262)
T ss_pred CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 46667777788777554331 11222233455555555555 134456778888888532 22222211
Q ss_pred hcCcccccccchhhhhhhHHHHHHHHHHHH----hhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCC
Q 008940 245 VGGVQKLQDGEFIVQATKDCVAKTLKRLEE----KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGG 320 (548)
Q Consensus 245 ~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~ 320 (548)
...+..| .............+.+ ..+...+..|+.+|.++.+.+|..+...|..+....+.++. ...+
T Consensus 157 -----~ya~~~f--r~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~d 228 (262)
T PF14225_consen 157 -----SYAKGRF--RDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGAD 228 (262)
T ss_pred -----HHHhcCC--CCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchH
Confidence 1122222 2222333333333333 33566888899999999999999999999999876554443 5567
Q ss_pred chHHHHHhhcCCCCccchhhHHHHHHHh
Q 008940 321 GLELLLGLLGSTNPKQQLDGAVALFKLA 348 (548)
Q Consensus 321 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 348 (548)
.+..+.++++++.- ..|...|-+..
T Consensus 229 lispllrlL~t~~~---~eAL~VLd~~v 253 (262)
T PF14225_consen 229 LISPLLRLLQTDLW---MEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHhCCccH---HHHHHHHHHHH
Confidence 88999999976533 34555554443
No 272
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=87.06 E-value=26 Score=32.60 Aligned_cols=150 Identities=16% Similarity=0.116 Sum_probs=82.4
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc--CChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940 41 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEV 118 (548)
Q Consensus 41 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~ 118 (548)
..|-..|.++++.+|.+|+..|..+...-+... ....-+..|+.+..+ .|......++..+..|.....-....
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~- 77 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES- 77 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-
Confidence 345667889999999999999998886433221 222235666666542 34455555566666665321110011
Q ss_pred HhcCChHHHHHhhh--cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCC
Q 008940 119 LAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDM 195 (548)
Q Consensus 119 ~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~ 195 (548)
....+..+.+-.. +.....|..+-..+..+........ .-...+.+..+++.+.. .||+-...+...+..+...-
T Consensus 78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 0011222222111 1224466777777777764422222 11224567777777775 58887777777777666443
Q ss_pred c
Q 008940 196 H 196 (548)
Q Consensus 196 ~ 196 (548)
+
T Consensus 156 ~ 156 (262)
T PF14500_consen 156 D 156 (262)
T ss_pred c
Confidence 3
No 273
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.81 E-value=29 Score=35.54 Aligned_cols=107 Identities=21% Similarity=0.258 Sum_probs=74.3
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHH
Q 008940 80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159 (548)
Q Consensus 80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 159 (548)
|.+..+++.+.+++..+|..++.+|+.+...-.++ +...-.|.+..|..-+-+..+.++..|+.+|+.+-.. ..+..
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~-~~nee- 167 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM-ELNEE- 167 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-cCChH-
Confidence 46677777778899999999999999997544444 3445567888888888888899999999999988532 22211
Q ss_pred HHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCC
Q 008940 160 IVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDM 195 (548)
Q Consensus 160 ~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~ 195 (548)
......|...++. ++.+||..| +.|+..++
T Consensus 168 ---n~~~n~l~~~vqnDPS~EVRr~a---llni~vdn 198 (885)
T COG5218 168 ---NRIVNLLKDIVQNDPSDEVRRLA---LLNISVDN 198 (885)
T ss_pred ---HHHHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence 1233466666664 566788765 45555443
No 274
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=86.69 E-value=34 Score=33.62 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=60.0
Q ss_pred chHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC-Ch-HHHHHHHHHHHHhhcCChhHHH
Q 008940 40 IPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DS-AIHYEAVGVIGNLVHSSPNIKK 116 (548)
Q Consensus 40 i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~-~v~~~a~~~L~~l~~~~~~~~~ 116 (548)
+..+++-+++ ....+|..++.-|..-+. +++.+..+..+|..+.+++.+.+. +. .....++.++.-++.+... -.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~-~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN-MH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc-hh
Confidence 4456666653 346788888888888886 799999999999999999999643 33 3333444455555544332 23
Q ss_pred HHHhcCChHHHHHhhh
Q 008940 117 EVLAAGALQPVIGLLS 132 (548)
Q Consensus 117 ~~~~~g~i~~L~~ll~ 132 (548)
.+...+....+++++.
T Consensus 101 l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhchhHHHHHHHHhc
Confidence 3334455666677776
No 275
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=86.12 E-value=27 Score=31.88 Aligned_cols=129 Identities=22% Similarity=0.194 Sum_probs=82.6
Q ss_pred hhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
...+|+.+...+..|..++..+..+.. -++..|..+.+.+..+.+..+.+.+..+-..++... +.++.+
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~ 79 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPL 79 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHH
Confidence 355678899999999999954412222 233456666777777777777777777776433332 334444
Q ss_pred HHHh--c--------cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh-hcCChHHHHHHHHHHHHhh
Q 008940 86 ILML--R--------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFA 150 (548)
Q Consensus 86 v~ll--~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~ 150 (548)
+..+ + +...+........+..++...++. ....++.+..++ .+.++.++..++.++..+|
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 4431 1 123344455556777777766662 223577888888 6777888888999999998
No 276
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=86.09 E-value=5.7 Score=30.31 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhhhChh-hHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh
Q 008940 11 SVIRRAADAITNLAHENSS-IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 89 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll 89 (548)
++|.+|+..|-.=-...-- ........+.+..|++..+.+.......++..+..+.. ++.....+.+.|+.+.|-++-
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHH
Confidence 5677777664433222221 12222345667788888888887899999999999997 688888888899888876666
Q ss_pred ccCChHHHHHHHHHHH
Q 008940 90 RSEDSAIHYEAVGVIG 105 (548)
Q Consensus 90 ~~~~~~v~~~a~~~L~ 105 (548)
...++..+...-.++.
T Consensus 81 ~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 81 PNVEPNLQAEIDEILD 96 (98)
T ss_pred hcCCHHHHHHHHHHHh
Confidence 6566666666555543
No 277
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=85.98 E-value=0.54 Score=43.95 Aligned_cols=55 Identities=22% Similarity=0.396 Sum_probs=45.0
Q ss_pred hcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcc-hhHhchhhcHHHH
Q 008940 476 QDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRP-GHSNLIQRIIPEI 530 (548)
Q Consensus 476 ~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~-~f~~l~~~~~~~~ 530 (548)
..++++|++.++--++....+.|.+.|+.|+..|+.+|++++ ++.-++.+++..|
T Consensus 70 p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 70 PSLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred CcCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence 368999999999999999999999999999999999999865 3445544443333
No 278
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=85.35 E-value=7.5 Score=36.35 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=89.3
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcC--ChHHHHHHhc----cCChHHHHHHHHHHHHhhcCChhHHH
Q 008940 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN--ALPTLILMLR----SEDSAIHYEAVGVIGNLVHSSPNIKK 116 (548)
Q Consensus 43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~Lv~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~ 116 (548)
+..++.+=..+-+.-++-.++-++. ++.....+...+ +...+..++. ...+..+..++++++|+...... +.
T Consensus 68 ~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~-~~ 145 (268)
T PF08324_consen 68 LLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG-RQ 145 (268)
T ss_dssp HHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC-HH
T ss_pred HHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc-HH
Confidence 3333333233446666777766665 355444444432 2445555554 24678889999999999876444 45
Q ss_pred HHHhc-C-ChHHHHHhhhcC----ChHHHHHHHHHHHHhhcCCchhH-HHHHhcCChHHHHHhh-CC-CCHHHHHHHHHH
Q 008940 117 EVLAA-G-ALQPVIGLLSSC----CSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEML-QS-PDVQLREMSAFA 187 (548)
Q Consensus 117 ~~~~~-g-~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~v~~L~~ll-~~-~~~~v~~~a~~~ 187 (548)
.+... + .+-..+..+... +..++..++..+.|++......+ ..-....++..+.+.+ .. .+++....++-+
T Consensus 146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvA 225 (268)
T PF08324_consen 146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVA 225 (268)
T ss_dssp HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 55543 2 233333323332 56678888888888873311111 0001112455566633 33 688999999999
Q ss_pred HHHhhcCCcchhhhHh
Q 008940 188 LGRLAQDMHNQAGIAH 203 (548)
Q Consensus 188 L~~l~~~~~~~~~~~~ 203 (548)
|+++...+........
T Consensus 226 lGtL~~~~~~~~~~~~ 241 (268)
T PF08324_consen 226 LGTLLSSSDSAKQLAK 241 (268)
T ss_dssp HHHHHCCSHHHHHHCC
T ss_pred HHHHhccChhHHHHHH
Confidence 9999966655444444
No 279
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=85.31 E-value=17 Score=38.12 Aligned_cols=133 Identities=14% Similarity=0.066 Sum_probs=88.2
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh-hcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940 80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKV 158 (548)
Q Consensus 80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~ 158 (548)
.+++.|...+++.+..+|+.++..+...+..-+ -..+..-++|.+..+. ...+..++.+++.++..+. +..+
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----q~lD 461 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----QRLD 461 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH----HHHH
Confidence 466666777778888999999999988864322 3455566788887764 4456778889999998886 1111
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCCh
Q 008940 159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG 219 (548)
Q Consensus 159 ~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 219 (548)
...-...+.++....+..+|.+......+..++.........+.....+|.++.+...+.-
T Consensus 462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccc
Confidence 1111123444555556678899888888888887665553344444677777777665543
No 280
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=85.21 E-value=18 Score=38.60 Aligned_cols=168 Identities=20% Similarity=0.147 Sum_probs=90.5
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc----CChHHHHHHHHHHHHhhcCCchh-
Q 008940 82 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS----CCSESQREAALLLGQFAATDSDC- 156 (548)
Q Consensus 82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~- 156 (548)
+..+.+++......- ..+...|..+......--. ..+..+..+++. .++.++..|..+++.+....-..
T Consensus 397 v~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~ 470 (618)
T PF01347_consen 397 VKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS 470 (618)
T ss_dssp HHHHHHHHHTT-S-H-HHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence 445556666533222 2244445554332211111 134455555553 34557777777777665321111
Q ss_pred --------HHHHHhcCChHHHHHhhC----CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC---ChhH
Q 008940 157 --------KVHIVQRGAVRPLIEMLQ----SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK---NGSL 221 (548)
Q Consensus 157 --------~~~~~~~g~v~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~v 221 (548)
........+++.+...+. .++..-+..++.+|+|+... ..++.+..++... ...+
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~ 540 (618)
T PF01347_consen 471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFI 540 (618)
T ss_dssp ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHH
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchHH
Confidence 111222346666666665 45667888999999999532 2466677777665 5678
Q ss_pred HHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh--hhhhhhhhH
Q 008940 222 QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV--AEKGVQRRV 299 (548)
Q Consensus 222 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~~~~~a 299 (548)
+..|+++|.+++..... .+.+.++.+..+ .++++|.+|
T Consensus 541 R~~Ai~Alr~~~~~~~~----------------------------------------~v~~~l~~I~~n~~e~~EvRiaA 580 (618)
T PF01347_consen 541 RVAAIQALRRLAKHCPE----------------------------------------KVREILLPIFMNTTEDPEVRIAA 580 (618)
T ss_dssp HHHHHHTTTTGGGT-HH----------------------------------------HHHHHHHHHHH-TTS-HHHHHHH
T ss_pred HHHHHHHHHHHhhcCcH----------------------------------------HHHHHHHHHhcCCCCChhHHHHH
Confidence 88899999988654321 144566666665 567888888
Q ss_pred HHHhhh
Q 008940 300 ALALAH 305 (548)
Q Consensus 300 ~~aL~~ 305 (548)
..+|..
T Consensus 581 ~~~lm~ 586 (618)
T PF01347_consen 581 YLILMR 586 (618)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777654
No 281
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.19 E-value=12 Score=40.19 Aligned_cols=167 Identities=17% Similarity=0.189 Sum_probs=106.0
Q ss_pred chhhHhhhcCChHHHHHHhcc--------CChHHHHHHHHHHHHhhcCChhHHHHHHhc--------CChHHHHHhhhc-
Q 008940 71 ENKNQIVECNALPTLILMLRS--------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--------GALQPVIGLLSS- 133 (548)
Q Consensus 71 ~~~~~~~~~g~i~~Lv~ll~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------g~i~~L~~ll~~- 133 (548)
...+.+.+.+++..++.+... +..++...|+.+|+-+..- |.++..+... .++..++.....
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 455677888889999888863 2346777888888877654 6666655532 255555554432
Q ss_pred ---CChHHHHHHHHHHHHhhcCCchhHHHHHhc-CC---hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCC
Q 008940 134 ---CCSESQREAALLLGQFAATDSDCKVHIVQR-GA---VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGG 206 (548)
Q Consensus 134 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~---v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 206 (548)
.+++++..|+.++.|+....|.++...... |- -+.. .+=+.......++.+.-.|+. +..+.|
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~-~l~~~~ks~~le~~l~~mw~~---------Vr~ndG 740 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI-FLGAGTKSAKLEQVLRQMWEA---------VRGNDG 740 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc-cccCCCchHHHHHHHHHHHHH---------HhcCcc
Confidence 368999999999999987766665433210 00 0000 000011122334444444444 345578
Q ss_pred hHHHHHhhcCCC-----hhHHHHHHHHHHhcccCCcchHHHHHhcCc
Q 008940 207 LVPLLKLLDSKN-----GSLQHNAAFALYGLADNEDNVADFIRVGGV 248 (548)
Q Consensus 207 l~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i 248 (548)
+..|+++|+-.+ ..++..||.+|..|++++..++.+.+.-++
T Consensus 741 IkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLv 787 (1516)
T KOG1832|consen 741 IKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPLV 787 (1516)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccc
Confidence 999999998554 468899999999999999988877665433
No 282
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.03 E-value=3.7 Score=35.09 Aligned_cols=116 Identities=22% Similarity=0.171 Sum_probs=73.0
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcC--ChHHHHHhhcCCC-hhHHHHHHHHHHhcccCCcchH
Q 008940 164 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG--GLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVA 240 (548)
Q Consensus 164 g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~ 240 (548)
..+..+..+++++++.-|..++..+.-.+...+. ..+.+.+ .+..++..++..+ +.+.+.++.+|..+...-....
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 3566788889999999999888888888766432 2332322 3556778887654 5677888888888865444433
Q ss_pred HHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccC
Q 008940 241 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 308 (548)
Q Consensus 241 ~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~ 308 (548)
.+.+....|.+. .+++.++.+++. ......++.+|..+..
T Consensus 104 ~l~Rei~tp~l~--------------------------~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 104 TLTREIATPNLP--------------------------KFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred chHHHHhhccHH--------------------------HHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 443333333321 255666666654 4556666777766643
No 283
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=84.79 E-value=5.7 Score=33.70 Aligned_cols=143 Identities=11% Similarity=0.119 Sum_probs=77.3
Q ss_pred CchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940 39 GIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 117 (548)
Q Consensus 39 ~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 117 (548)
.++.|.++|+.+ +..+|.+++++|+.+..-+|...+.+....- .-. -.+.+......... ..+.... .+.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~~~~~~~l~-~~~~~~~----~ee 81 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSNDESTDISLP-MMGISPS----SEE 81 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccccchhhHHh-hccCCCc----hHH
Confidence 345677778765 5999999999999999866655443322111 000 01111111111111 1111111 123
Q ss_pred HHhcCChHHHHHhhhcCChH-HHHHHHHHHHHhhcC-CchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940 118 VLAAGALQPVIGLLSSCCSE-SQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 192 (548)
Q Consensus 118 ~~~~g~i~~L~~ll~~~~~~-~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 192 (548)
..-..++..|++.|+++.-. -...++.++.++... +..+...+ ..++|.++..++..++..++....-|+.|.
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33334677888888776522 233445555555422 12222222 358899999999877788888777777664
No 284
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.71 E-value=11 Score=38.30 Aligned_cols=71 Identities=21% Similarity=0.203 Sum_probs=55.8
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940 164 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 164 g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 234 (548)
|.+..++.-+.+++..||..++..|.-+...-.......-+|.+..|.+-+-+..+.|+..|+.+|+.+-.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 45566666667789999999999999988665555555666777778877778889999999999998854
No 285
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=83.62 E-value=56 Score=33.46 Aligned_cols=71 Identities=20% Similarity=0.180 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHh------hhhhhhhhHHHHhhhccCCCc-cc-eeeecCC--chHHHHHhhcCCCCccchhhHHHHHHHh
Q 008940 279 RVLNHLLYLMRV------AEKGVQRRVALALAHLCSPDD-QR-TIFIDGG--GLELLLGLLGSTNPKQQLDGAVALFKLA 348 (548)
Q Consensus 279 ~~~~~L~~ll~~------~~~~~~~~a~~aL~~l~~~~~-~~-~~~~~~~--~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 348 (548)
..+..|..+|.+ .+..+...|...+..+..+.. .+ ..+--.- .++.|...++.+++.+-......+.++.
T Consensus 250 ~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 250 SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 356777777733 234455677888887765542 22 2222222 6788888888888888778888888877
Q ss_pred h
Q 008940 349 N 349 (548)
Q Consensus 349 ~ 349 (548)
.
T Consensus 330 ~ 330 (464)
T PF11864_consen 330 D 330 (464)
T ss_pred h
Confidence 3
No 286
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.58 E-value=9.9 Score=40.64 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=79.4
Q ss_pred HHHHhhcc----CCHHHHHHHHHHHHHhhccCcc---------hhhHhhhcCChHHHHHHhc----cCChHHHHHHHHHH
Q 008940 42 PLVELLEF----TDTKVQRAAAGALRTLAFKNDE---------NKNQIVECNALPTLILMLR----SEDSAIHYEAVGVI 104 (548)
Q Consensus 42 ~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~---------~~~~~~~~g~i~~Lv~ll~----~~~~~v~~~a~~~L 104 (548)
.+..++++ .++.++..|+.+++.+....-. .........+++.+...+. ..+.+-+..++.+|
T Consensus 435 ~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 514 (618)
T PF01347_consen 435 ELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKAL 514 (618)
T ss_dssp HHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHh
Confidence 34555543 3466777888888777642111 1122223346677776665 45678888999999
Q ss_pred HHhhcCChhHHHHHHhcCChHHHHHhhhcC---ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC--CCHH
Q 008940 105 GNLVHSSPNIKKEVLAAGALQPVIGLLSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQ 179 (548)
Q Consensus 105 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~--~~~~ 179 (548)
+|+-. + ..++.+..++.+. ...+|..|+++|..++...+.. +.+.+++++.+ .+++
T Consensus 515 gN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~E 575 (618)
T PF01347_consen 515 GNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPE 575 (618)
T ss_dssp HHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HH
T ss_pred hccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChh
Confidence 99942 2 2577888887766 5678999999999886544432 34667777765 4678
Q ss_pred HHHHHHHHHHH
Q 008940 180 LREMSAFALGR 190 (548)
Q Consensus 180 v~~~a~~~L~~ 190 (548)
+|..|..+|-.
T Consensus 576 vRiaA~~~lm~ 586 (618)
T PF01347_consen 576 VRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88887666554
No 287
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=82.51 E-value=23 Score=35.22 Aligned_cols=131 Identities=13% Similarity=0.120 Sum_probs=89.1
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCCc----chhhhHhcCChHHHHHhhcCCC------h-hHHHHHHHHHHhcccCC
Q 008940 168 PLIEMLQSPDVQLREMSAFALGRLAQDMH----NQAGIAHNGGLVPLLKLLDSKN------G-SLQHNAAFALYGLADNE 236 (548)
Q Consensus 168 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~l~~L~~ll~~~~------~-~v~~~a~~~L~~l~~~~ 236 (548)
.+..+...++.+-+-.++.....++.+.+ +++.+.+.-|.+-+-+++.+++ + -.+.-++..|..+|+.+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 35666666666777888888888886654 3555777777777778886543 2 34456677888888877
Q ss_pred cchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhh------hhhhHHHHhhhccCC
Q 008940 237 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKG------VQRRVALALAHLCSP 309 (548)
Q Consensus 237 ~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~------~~~~a~~aL~~l~~~ 309 (548)
+-...-. + -+-+|.|+.++.. .+++ +...+-.+|..++..
T Consensus 95 ElAsh~~-------------------------------~--v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~ 141 (698)
T KOG2611|consen 95 ELASHEE-------------------------------M--VSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA 141 (698)
T ss_pred hhccCHH-------------------------------H--HHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC
Confidence 5421110 0 0145677777766 3444 566777788888888
Q ss_pred CccceeeecCCchHHHHHhhcC
Q 008940 310 DDQRTIFIDGGGLELLLGLLGS 331 (548)
Q Consensus 310 ~~~~~~~~~~~~i~~L~~ll~~ 331 (548)
+.+.+.++..|+++.+.++-.-
T Consensus 142 e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 142 EAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred CchhHHHHhcCchHHHHHHHhC
Confidence 8888889999999999876553
No 288
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.24 E-value=1.6 Score=41.01 Aligned_cols=64 Identities=19% Similarity=0.100 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhChhhHHHHHhcCCchHHHHhh--ccCCHHHHHHHHHHHHHhhccCcchhhHhhhc
Q 008940 16 AADAITNLAHENSSIKTRVRMEGGIPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 79 (548)
Q Consensus 16 a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 79 (548)
..+.++.+|+.+++++..+.+.||++.++.-. .+.+|-+++..+.+++.+...|.+|++.+.+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 55688999999999999999999999888744 45679999999999999999888998887654
No 289
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=81.79 E-value=14 Score=28.20 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhhccCcchhhHhh-hcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh
Q 008940 53 KVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131 (548)
Q Consensus 53 ~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 131 (548)
++|.+|+.-+..=-.++--....+. ..+.+..|+...+.++......++..+..++.. +.....+.+-|+...|.++-
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHH
Confidence 5666666544332222233333333 345677888888888888999999999999876 54457888889898877777
Q ss_pred hcCChHHHHHHHHH
Q 008940 132 SSCCSESQREAALL 145 (548)
Q Consensus 132 ~~~~~~~~~~a~~~ 145 (548)
...++..+...-..
T Consensus 81 ~~~~~~~~~~id~i 94 (98)
T PF14726_consen 81 PNVEPNLQAEIDEI 94 (98)
T ss_pred hcCCHHHHHHHHHH
Confidence 66666555444333
No 290
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=81.72 E-value=28 Score=30.16 Aligned_cols=156 Identities=19% Similarity=0.160 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhhcCCcchhhh------------HhcCC-hHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhc
Q 008940 180 LREMSAFALGRLAQDMHNQAGI------------AHNGG-LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG 246 (548)
Q Consensus 180 v~~~a~~~L~~l~~~~~~~~~~------------~~~~~-l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g 246 (548)
+|..|+.+|..+++..+.+... ...+. ...+.-++.++++.+|..|+.+|..+-.+...--...+.-
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 6778888888888763333111 11122 2334566678899999999999999987653322222211
Q ss_pred CcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCCCc-cceeeecCCchH-
Q 008940 247 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLE- 323 (548)
Q Consensus 247 ~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~~~i~- 323 (548)
--+ ...|..- ...+..+- ...-..|+..++. .+..+....+.++..++.... +|- ..|.++
T Consensus 82 ~~~---~~sFtsl------S~tLa~~i----~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~ 145 (182)
T PF13251_consen 82 KGP---SGSFTSL------SSTLASMI----MELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTE 145 (182)
T ss_pred CCC---CCCcccH------HHHHHHHH----HHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHH
Confidence 100 0111100 00111110 1123445555655 577788888999999987655 331 234444
Q ss_pred ---HHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 324 ---LLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 324 ---~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
.+..++.+.|++++..+..++..+..-.
T Consensus 146 ~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 146 VVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 4455677899999999999998887643
No 291
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=81.16 E-value=26 Score=36.93 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=94.3
Q ss_pred cCChHHHHHhhhc-----CC---hHHHHHHHHHHHHhhc--CCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 008940 121 AGALQPVIGLLSS-----CC---SESQREAALLLGQFAA--TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190 (548)
Q Consensus 121 ~g~i~~L~~ll~~-----~~---~~~~~~a~~~L~~l~~--~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~ 190 (548)
.|.++.++..+.. ++ ..-.+-|.+.++++.+ ..+....-+.+.=+++.+++.++++.--++..+|..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 5788888888832 12 2233445556666544 223333345555577778888888887899999999999
Q ss_pred hhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHh--cCccccc--ccchhhhhhhHHHH
Q 008940 191 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV--GGVQKLQ--DGEFIVQATKDCVA 266 (548)
Q Consensus 191 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--g~i~~L~--~~~~~~~~~~~~~~ 266 (548)
+..+-.... .-..+.+.....+++.+-.++..|+.+|.-+..+...-..+.++ +..+.|+ ...|.++....|+.
T Consensus 487 ~eeDfkd~~--ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe 564 (970)
T COG5656 487 IEEDFKDNG--ILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVME 564 (970)
T ss_pred HHHhcccch--HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHH
Confidence 854433322 22235666777888888889999999999887776555555443 2333333 24556666666665
Q ss_pred HHHHHH
Q 008940 267 KTLKRL 272 (548)
Q Consensus 267 ~~~~~~ 272 (548)
.-.+..
T Consensus 565 ~fVe~f 570 (970)
T COG5656 565 SFVEYF 570 (970)
T ss_pred HHHHHh
Confidence 555444
No 292
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.86 E-value=50 Score=36.51 Aligned_cols=263 Identities=15% Similarity=0.132 Sum_probs=139.5
Q ss_pred HHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC---
Q 008940 59 AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC--- 135 (548)
Q Consensus 59 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--- 135 (548)
-.+|..+...+.+|...+.+.+++..+++++- +++-|.-.++++..|....+... ...-+-.++..|++.-
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceec
Confidence 34566677777888888888888888888773 45566666777766655444310 0112334555555521
Q ss_pred ---------hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC----------CCHHHHH---HHHHHHH--Hh
Q 008940 136 ---------SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS----------PDVQLRE---MSAFALG--RL 191 (548)
Q Consensus 136 ---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~----------~~~~v~~---~a~~~L~--~l 191 (548)
.........+++.+.-.+...+..+.+.++...|...|.. +|.-+-. ..+.-+. .+
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 1234445567777766666777888889998888877631 1211111 1112222 23
Q ss_pred hcCCcchhhhHhcCChHHHHHhhcCCC---hhHHHHHHHHHHhcc----cCCcchHHHHHhcCcccccccchhhhhhhHH
Q 008940 192 AQDMHNQAGIAHNGGLVPLLKLLDSKN---GSLQHNAAFALYGLA----DNEDNVADFIRVGGVQKLQDGEFIVQATKDC 264 (548)
Q Consensus 192 ~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~v~~~a~~~L~~l~----~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~ 264 (548)
|.++.++..+...-.-+.+..+|.... .+..++....|..++ ..+.-........-+..+-+..|...+..-
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsG- 895 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSG- 895 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCC-
Confidence 455555554433223344555555332 111112222222211 111111222222222222111111000000
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC-ccceeeecCCchHHHHHhhc
Q 008940 265 VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLG 330 (548)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~i~~L~~ll~ 330 (548)
.-....+.+...+++..++..+-...+..|.+-+..+..+++.. .++......|.++.|++++.
T Consensus 896 --qfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiy 960 (2799)
T KOG1788|consen 896 --QFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY 960 (2799)
T ss_pred --CcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence 00011245677888888888888888999999999999998754 46666666677777776654
No 293
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.84 E-value=29 Score=38.14 Aligned_cols=231 Identities=15% Similarity=0.149 Sum_probs=133.7
Q ss_pred HHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC----
Q 008940 17 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE---- 92 (548)
Q Consensus 17 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~---- 92 (548)
-.+|..+.+.+.++.+.+.+..|+..++.++- +.+-|...++.+..+...++.... ..-+-.+++.|+++
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceec
Confidence 56788888899999999999999999988884 445566667777777654443211 11244566666642
Q ss_pred --------ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc--------CChH--HHHHHHHHH---HHhh-
Q 008940 93 --------DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--------CCSE--SQREAALLL---GQFA- 150 (548)
Q Consensus 93 --------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--------~~~~--~~~~a~~~L---~~l~- 150 (548)
..........+++.+...+...+..+.+.++...|...|.. +..+ +-......| ..++
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 12456677788888877777777888888888888776643 1111 111111111 1111
Q ss_pred cCCchhHHHHHhcCChHHHHHhhCC--------------------------CCHHHHHHHHHHHHHhhcC----------
Q 008940 151 ATDSDCKVHIVQRGAVRPLIEMLQS--------------------------PDVQLREMSAFALGRLAQD---------- 194 (548)
Q Consensus 151 ~~~~~~~~~~~~~g~v~~L~~ll~~--------------------------~~~~v~~~a~~~L~~l~~~---------- 194 (548)
..++.++..+...=.-+.+..+|+. ++-.--..|+..+..+-.+
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 1223333322111112222222221 1111111222222222111
Q ss_pred -CcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc-CCcchHHHHHhcCcccccc
Q 008940 195 -MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQD 253 (548)
Q Consensus 195 -~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~ 253 (548)
.+.+..+...|++..+++.+-...+..+..-+..+..+++ ++.+.+.....|.++.|+.
T Consensus 897 fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellle 957 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLE 957 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHH
Confidence 1224556778889889988887888888888888888887 5666666666677766654
No 294
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.70 E-value=27 Score=36.59 Aligned_cols=144 Identities=13% Similarity=0.091 Sum_probs=87.8
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhc-cCcch----hhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHH
Q 008940 41 PPLVELLEFTDTKVQRAAAGALRTLAF-KNDEN----KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 115 (548)
Q Consensus 41 ~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~----~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 115 (548)
|.|.+-|+..|..||..|+..+.++-- .+|+. ...+++ +-...+.++|.++-+.+|..|..-++.+.+. -
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~----f 251 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSK----F 251 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH----H
Confidence 344556677899999999999988753 12332 222333 2467888999999999999998887777532 1
Q ss_pred HHHHhcCChHHHHHhhh-----cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 008940 116 KEVLAAGALQPVIGLLS-----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190 (548)
Q Consensus 116 ~~~~~~g~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~ 190 (548)
..++-...+..++..+. +...+++-.....|-.+... |..-. +.+ -++|.+-..|.++...||..+...|..
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p~sh~-~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-PLSHP-LLE-QLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-ccchh-HHH-HHHHhcchhhhccchhHHHHHHHHHHH
Confidence 22222223333333222 23356666666666666532 32222 111 245666677778888898888777776
Q ss_pred hh
Q 008940 191 LA 192 (548)
Q Consensus 191 l~ 192 (548)
+-
T Consensus 329 ik 330 (1005)
T KOG1949|consen 329 IK 330 (1005)
T ss_pred HH
Confidence 64
No 295
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.65 E-value=98 Score=36.80 Aligned_cols=249 Identities=15% Similarity=0.065 Sum_probs=118.7
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHH-HHHHHHHHhhcCCchhHHHH
Q 008940 82 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR-EAALLLGQFAATDSDCKVHI 160 (548)
Q Consensus 82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~-~a~~~L~~l~~~~~~~~~~~ 160 (548)
...++..+..+++..+..+..+++.++...+.. .++ .+..+.+.+-+.+..+.+.+ --..+++.+-...-.....-
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 334455566677888888888888887543321 111 11233333334443333333 33345554432211111111
Q ss_pred HhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcch
Q 008940 161 VQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 239 (548)
Q Consensus 161 ~~~g~v~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 239 (548)
.....+..+..+.+++ +|.|+.+++.++..+......-..+.-+..+..+..++.+..+ .....-..+.+.-..++.-
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCc-chhhhhhhhccccccchhH
Confidence 1123466777777775 5589999999999888655432222222233334444443221 1111111222221111111
Q ss_pred HHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecC
Q 008940 240 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDG 319 (548)
Q Consensus 240 ~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~ 319 (548)
..+...-| +-|- ..+..+. . ....+.++....-++.++++.++.++..++.++..-..- ..--.
T Consensus 1034 ~alittlg-peL~-~N~~~d~-----------t-~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n~~ 1097 (2067)
T KOG1822|consen 1034 DALITTLG-PELG-PNGDKDS-----------T-STLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVNLD 1097 (2067)
T ss_pred HHHHHhcc-cccC-CCCcccc-----------h-hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hccHH
Confidence 12211110 1110 0000000 0 011122333334445567999999999999988543221 11222
Q ss_pred CchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 320 GGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 320 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
-.|+.|..++.++.--.|......+..+...
T Consensus 1098 ~lV~~L~~~l~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1098 SLVLQLCSLLSSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred HHHHHHHHHhcchhhhhhhhHHhhhhHHhHH
Confidence 3577888888877666677777777777654
No 296
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=80.26 E-value=14 Score=31.32 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=74.5
Q ss_pred ChHHHHHHhccC-ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHH
Q 008940 81 ALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159 (548)
Q Consensus 81 ~i~~Lv~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 159 (548)
.++.|+++++.+ +..+|.+++++|+.|-.-+|-..+.+.. ..+.-. -...+.......... ... ......
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~--~~~~~~--~~~~~~~~~~~~l~~-~~~----~~~~ee 81 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQK--SLDSKS--SENSNDESTDISLPM-MGI----SPSSEE 81 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccc--cCCccc--cccccccchhhHHhh-ccC----CCchHH
Confidence 466778888754 6899999999999995554443221111 111000 011111111111111 111 111222
Q ss_pred HHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhc
Q 008940 160 IVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 232 (548)
Q Consensus 160 ~~~~g~v~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 232 (548)
..-..++..|+..|+++.- .-...+..++.++......+-.-.-...++.++..+++.++..++....-|+.|
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3333467788888887532 233456666666664432221112224678888888877777777666666554
No 297
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=78.77 E-value=3 Score=38.19 Aligned_cols=86 Identities=19% Similarity=0.310 Sum_probs=60.5
Q ss_pred CCccEEEEeCCeEEEchHHHHhccc-HHHHhhhcCCCCC---CCCCceec-CCCCHHHHHHHHHHHhcCccccc-hHhHH
Q 008940 379 TLSDVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYRE---KDARDIEI-PNIRWEVFELMMRFIYTGSVDVT-LDIAQ 452 (548)
Q Consensus 379 ~~~Dv~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~~e---~~~~~i~l-~~~~~~~~~~~l~~~Yt~~~~~~-~~~~~ 452 (548)
.---++..+++..|...+.+|.+.- ...-.||.+++.- ...++.++ ++++..+|+.+|+|.-+|.+.-+ .-.+.
T Consensus 94 ~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvp 173 (438)
T KOG3840|consen 94 EGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVS 173 (438)
T ss_pred CCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchH
Confidence 3335677777878888877776542 3345677665432 22335655 57999999999999999998755 45688
Q ss_pred HHHHHHHHhChH
Q 008940 453 DLLRAADQYLLE 464 (548)
Q Consensus 453 ~ll~~a~~~~~~ 464 (548)
+|-++.|++.++
T Consensus 174 ELrEACDYLlip 185 (438)
T KOG3840|consen 174 ELREACDYLLVP 185 (438)
T ss_pred HHHhhcceEEee
Confidence 899999988765
No 298
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=77.86 E-value=47 Score=30.91 Aligned_cols=148 Identities=16% Similarity=0.083 Sum_probs=76.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc--CChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940 83 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHI 160 (548)
Q Consensus 83 ~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~ 160 (548)
+.|-..|.++++.+|..|+.+|..+...-+... ....-+..|+..+.+ .+......++.++..|.....-....
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~- 77 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES- 77 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-
Confidence 345567888999999999999998865544211 111123444444432 23444444455555554221111111
Q ss_pred HhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcC-CChhHHHHHHHHHHhcccC
Q 008940 161 VQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADN 235 (548)
Q Consensus 161 ~~~g~v~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~ 235 (548)
...++..+.+... +-....|..+...+..+.........-...+.+..+++.++. .||.-...+...+..+...
T Consensus 78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 1112333333222 223457778888888877553221111122345556666654 5676666666666655443
No 299
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=75.87 E-value=8.8 Score=31.86 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=58.7
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhcc-CChHHHHHHHHHHHHhhc
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVH 109 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~~-~~~~v~~~a~~~L~~l~~ 109 (548)
++..|.+-+.+.++.++..|+..|..+.... ......+...+++..|+.++.. .+..|+..++..+...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999999998743 3456677778899999999987 688999999999887753
No 300
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=75.02 E-value=8.1 Score=34.38 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=57.7
Q ss_pred CCccEEEEeCCeEEEchHHH-Hhc-ccHHHHhhhcCCCCC--CCCCceecCCCCHHHHHHHHHHHhcCccccch--HhHH
Q 008940 379 TLSDVTFLVEGRRFYAHRIC-LLA-SSDAFRAMFDGGYRE--KDARDIEIPNIRWEVFELMMRFIYTGSVDVTL--DIAQ 452 (548)
Q Consensus 379 ~~~Dv~~~~~~~~~~~h~~i-l~~-~s~~f~~~~~~~~~e--~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~--~~~~ 452 (548)
.+.|++-.-.|+.++.|+.- |.. .-....+||++...- .......| |=+...|+.+++|+-|....+++ .++.
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~ 84 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVE 84 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHH
Confidence 34454444334445554422 222 223445666642211 12234444 34677999999999997777776 6789
Q ss_pred HHHHHHHHhChHhHHHHHHHH
Q 008940 453 DLLRAADQYLLEGLKRLCEYT 473 (548)
Q Consensus 453 ~ll~~a~~~~~~~l~~~c~~~ 473 (548)
.|.+-|++|+++.......+.
T Consensus 85 ~L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 85 RLVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred HHHHHHHHHccccHHHHHhcc
Confidence 999999999999887766443
No 301
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=74.57 E-value=15 Score=34.28 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhhHhhhc-C-ChHHHHHHhccC----ChHHHHHHHHHHHHhhcCChhHH-HHHHhcC
Q 008940 50 TDTKVQRAAAGALRTLAFKNDENKNQIVEC-N-ALPTLILMLRSE----DSAIHYEAVGVIGNLVHSSPNIK-KEVLAAG 122 (548)
Q Consensus 50 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g-~i~~Lv~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g 122 (548)
..+..+..+++++.|+-. ++..+..+.+. + .+...+..+... +..++..++.++.|++......+ ..-....
T Consensus 122 ~~~~~~ml~lR~l~NlF~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFS-HPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHTT-SCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CcHHHHHHHHHHHHHhhC-CCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 457889999999999997 56666666654 2 233333333333 68899999999999974211111 0000011
Q ss_pred ChHHHHHhhhc--CChHHHHHHHHHHHHhhcCCchh
Q 008940 123 ALQPVIGLLSS--CCSESQREAALLLGQFAATDSDC 156 (548)
Q Consensus 123 ~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~ 156 (548)
.+..+.+.+.. .+++....++.+|+++...++..
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA 236 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH
Confidence 34455553322 57899999999999999654433
No 302
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=74.39 E-value=1.2e+02 Score=31.92 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhc---CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhc--CChHHH
Q 008940 11 SVIRRAADAITNLAHENSSIKTRVRME---GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTL 85 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~---g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L 85 (548)
+++--|+..|+-+..+.+.+...+.+. ..+..++..++ .++..+..++++|.|+-. ++..++.+... -++..+
T Consensus 559 ~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~-~~~g~~~~~s~~~~i~~~~ 636 (745)
T KOG0301|consen 559 EMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFS-NPAGRELFMSRLESILDPV 636 (745)
T ss_pred HHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhhhh
Confidence 445556667766665444443333322 23444444444 567888999999999997 47777666554 122222
Q ss_pred HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC-----ChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940 86 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-----CSESQREAALLLGQFAATDSDCKVHI 160 (548)
Q Consensus 86 v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~ 160 (548)
...=..++..++........|.+.- .-+.-.+.++.+.+...+... +-+....++.||++|+..+ .....+
T Consensus 637 ~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~-~~~~~~ 712 (745)
T KOG0301|consen 637 IEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD-ASVIQL 712 (745)
T ss_pred hhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc-HHHHHH
Confidence 2222234556666655555555321 111122246666666665432 2234455677899998664 445556
Q ss_pred HhcCChHHHHHhhCC
Q 008940 161 VQRGAVRPLIEMLQS 175 (548)
Q Consensus 161 ~~~g~v~~L~~ll~~ 175 (548)
.+.--+..++..+++
T Consensus 713 A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLKE 727 (745)
T ss_pred HHhcCHHHHHHHHHH
Confidence 666667777777765
No 303
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=74.34 E-value=1.1e+02 Score=31.39 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhhcCC--cchhhhHhcC--C
Q 008940 137 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQDM--HNQAGIAHNG--G 206 (548)
Q Consensus 137 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~--~ 206 (548)
+....+-.++.||+...-. ...+..|...|.+ .+..+..-|...+..+.... +....+.-.- .
T Consensus 230 ~l~~~~w~~m~nL~~S~~g-------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v 302 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLG-------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV 302 (464)
T ss_pred ccchhHHHHHHHHHcCccH-------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence 4445555677888743221 1255677788832 24456667788888777655 2222222222 5
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940 207 LVPLLKLLDSKNGSLQHNAAFALYGLA 233 (548)
Q Consensus 207 l~~L~~ll~~~~~~v~~~a~~~L~~l~ 233 (548)
++.+...++.+++.+-...+..+.++-
T Consensus 303 l~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 303 LPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 666777777777766666666666665
No 304
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=74.09 E-value=1e+02 Score=32.54 Aligned_cols=174 Identities=17% Similarity=0.158 Sum_probs=87.8
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhc--cCcchhhHhhhcCC---hHHHHHHhccCChH--HHHHHHHHHHHhh-cCC
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAF--KNDENKNQIVECNA---LPTLILMLRSEDSA--IHYEAVGVIGNLV-HSS 111 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~---i~~Lv~ll~~~~~~--v~~~a~~~L~~l~-~~~ 111 (548)
+-.|+++|+.-+.+-......-+.. .. ...-..+.+...|- +..+.+.+...... ....++..+.... .-+
T Consensus 313 f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt 391 (574)
T smart00638 313 FLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT 391 (574)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC
Confidence 4456777776655444444444333 10 01122334444443 44555556554322 1222222222222 222
Q ss_pred hhHHHHHHhcCChHHHHHhhhcC----ChHHHHHHHHHHHHhhc----CCchhHHHHHhcCChHHHHHhhC----CCCHH
Q 008940 112 PNIKKEVLAAGALQPVIGLLSSC----CSESQREAALLLGQFAA----TDSDCKVHIVQRGAVRPLIEMLQ----SPDVQ 179 (548)
Q Consensus 112 ~~~~~~~~~~g~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~g~v~~L~~ll~----~~~~~ 179 (548)
++ .+..+..++.++ .+.++..|..+++++.. ..+.... ......++.+...|. ..+..
T Consensus 392 ~~---------~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~ 461 (574)
T smart00638 392 EE---------ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEE 461 (574)
T ss_pred HH---------HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCch
Confidence 22 456677777653 34466666666666652 2111111 111235555555543 34566
Q ss_pred HHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhc-C--CChhHHHHHHHHHHhccc
Q 008940 180 LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-S--KNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 180 v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~--~~~~v~~~a~~~L~~l~~ 234 (548)
-+...+.+|+|+.... .+..+..++. + ....++..|+++|.+++.
T Consensus 462 ~~~~~LkaLGN~g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~ 509 (574)
T smart00638 462 EIQLYLKALGNAGHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAK 509 (574)
T ss_pred heeeHHHhhhccCChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 6788899999985432 3444555554 2 246788899999998875
No 305
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=73.96 E-value=13 Score=30.35 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=57.0
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccCcc-hhhHhhhcCChHHHHHHhcc---CChHHHHHHHHHHHHhhc
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILMLRS---EDSAIHYEAVGVIGNLVH 109 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~Lv~ll~~---~~~~v~~~a~~~L~~l~~ 109 (548)
++..|-+-|+++++.++..|+..|-.+...... ....+.....+..|+.++.. .+..++..++..+.+.+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 455788888999999999999999999985444 55666666788889999874 478899999999887754
No 306
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=73.86 E-value=33 Score=32.31 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=46.2
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHH-HHHHhcCChHHHHH----hhh--------cCChHHHHHHHHHHH
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGALQPVIG----LLS--------SCCSESQREAALLLG 147 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~----ll~--------~~~~~~~~~a~~~L~ 147 (548)
+++.++.++.+.++.+|..++.+|..+....+... ..+...|..+.+-+ ++. +....+...+-.+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68889999999999999999999999987555432 22455565544433 332 223345555556666
Q ss_pred Hhh
Q 008940 148 QFA 150 (548)
Q Consensus 148 ~l~ 150 (548)
.++
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 664
No 307
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=73.48 E-value=48 Score=27.05 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=57.6
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCChh-HHHHHHhcCChHHHHHhhhc---CChHHHHHHHHHHHHhhcC
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLAAGALQPVIGLLSS---CCSESQREAALLLGQFAAT 152 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~ 152 (548)
++..|-+-+.++++.++..|+.+|-.+..++.. ....+.....+..+++++.. .+++++..+...+...+..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 577788888899999999999999999887755 56677776788889999875 3578888888888777643
No 308
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=73.19 E-value=42 Score=35.57 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=81.7
Q ss_pred cCCchHHHHhhcc--------CCHHHHHHHHHHHHHhhc--cCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHH
Q 008940 37 EGGIPPLVELLEF--------TDTKVQRAAAGALRTLAF--KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN 106 (548)
Q Consensus 37 ~g~i~~L~~ll~~--------~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~ 106 (548)
.|+++-+...|.. +++...+.|++.+.++.. .-+.....+.+.=+++.+++.++++.--++..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 4888889988842 234556777777777764 234444455555567778888888888899999999999
Q ss_pred hhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCC
Q 008940 107 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 153 (548)
Q Consensus 107 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 153 (548)
+..+.+ +......+......++.+.+-.++..|+.|+..+..+.
T Consensus 487 ~eeDfk---d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 487 IEEDFK---DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHhcc---cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 954433 33333445677788888888889999999999998664
No 309
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=72.03 E-value=39 Score=31.88 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=49.6
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchh-hHhhhcCChHHHHH----Hhc--------cCChHHHHHHHHHHH
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLIL----MLR--------SEDSAIHYEAVGVIG 105 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~Lv~----ll~--------~~~~~v~~~a~~~L~ 105 (548)
++|.++.++.+.++.++..++.+|..+....+... ..+.+.|..+.+-+ ++. ++...+...+..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 57899999999999999999999999997433332 23666676555443 333 234556777777777
Q ss_pred Hhh
Q 008940 106 NLV 108 (548)
Q Consensus 106 ~l~ 108 (548)
.|+
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 774
No 310
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=72.00 E-value=1.1e+02 Score=30.32 Aligned_cols=134 Identities=16% Similarity=0.100 Sum_probs=73.4
Q ss_pred ChHHHHHHHHHHHHhhcCChhHHHHHHhcC---ChHHHHHhhhcCC--hHHHHHHHHHHHHhhcCCchhHHHHHhcCChH
Q 008940 93 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAG---ALQPVIGLLSSCC--SESQREAALLLGQFAATDSDCKVHIVQRGAVR 167 (548)
Q Consensus 93 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g---~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~ 167 (548)
+.++..+|+++|+.+..+ +++...+-..- .+...+..+.+++ ..+.....|+|..-- ....+.....+.
T Consensus 59 ~~~L~~qALkll~~~l~~-~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-----f~~~~~~~~~~~ 132 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYH-PEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-----FSPKIMTSDRVE 132 (372)
T ss_pred chHHHHHHHHHHHHHHcc-HHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----CCCcccchhhHH
Confidence 678889999999999754 55433333221 3445555554443 234455555544421 112233444555
Q ss_pred HHHHhhCC-----CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhc
Q 008940 168 PLIEMLQS-----PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 232 (548)
Q Consensus 168 ~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 232 (548)
.++..+.. +...+....+.++.++....+..-.-.-.-.++.++..+-+....++..|...+..+
T Consensus 133 ~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 133 RLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEA 202 (372)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 55555432 345677778888888876544321111112466666666666666776655555444
No 311
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=71.55 E-value=12 Score=31.00 Aligned_cols=72 Identities=11% Similarity=0.091 Sum_probs=58.4
Q ss_pred CCchHHHHhhccCCHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhc
Q 008940 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVH 109 (548)
Q Consensus 38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~ 109 (548)
.++..|.+-|+++++.++..|+..|-.+.... ......+...+.++.|+.++. ..++.|+..++.++.+-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 35667888889999999999999999998742 446667778889999999887 5678899999988877753
No 312
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=71.44 E-value=13 Score=30.64 Aligned_cols=70 Identities=10% Similarity=0.124 Sum_probs=56.8
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHHhcc------CChHHHHHHHHHHHHhh
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLV 108 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~ll~~------~~~~v~~~a~~~L~~l~ 108 (548)
++..|.+-+++.++.++..|+..|-.+... .......+...+++..|++++.. .+..|+..++..+..-+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 466788889999999999999999999873 34566777788899999999953 46789999888887665
No 313
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=71.43 E-value=24 Score=37.35 Aligned_cols=131 Identities=20% Similarity=0.176 Sum_probs=74.4
Q ss_pred HHHHhhccC----CHHHHHHHHHHHHHhhcc---CcchhhHhhhcCChHHHHHHhc----cCChHHHHHHHHHHHHhhcC
Q 008940 42 PLVELLEFT----DTKVQRAAAGALRTLAFK---NDENKNQIVECNALPTLILMLR----SEDSAIHYEAVGVIGNLVHS 110 (548)
Q Consensus 42 ~L~~ll~~~----~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~i~~Lv~ll~----~~~~~v~~~a~~~L~~l~~~ 110 (548)
.+.++++++ .+.++..|+.+++.+... +............++.+...|. ..+.+-+...+.+|+|+..
T Consensus 397 ~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~- 475 (574)
T smart00638 397 ALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH- 475 (574)
T ss_pred HHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-
Confidence 444555442 345666666666666531 1111101111224555555543 3455667778888888843
Q ss_pred ChhHHHHHHhcCChHHHHHhhh-c--CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC--CCHHHHHHHH
Q 008940 111 SPNIKKEVLAAGALQPVIGLLS-S--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSA 185 (548)
Q Consensus 111 ~~~~~~~~~~~g~i~~L~~ll~-~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~--~~~~v~~~a~ 185 (548)
+. .++.+..++. + ....+|..|+++|..++...+.. +-+.+++++.+ .++++|..|.
T Consensus 476 -~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~ 537 (574)
T smart00638 476 -PS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAV 537 (574)
T ss_pred -hh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHH
Confidence 22 3445555554 2 23568999999999987544432 34567777665 5678888876
Q ss_pred HHHHHh
Q 008940 186 FALGRL 191 (548)
Q Consensus 186 ~~L~~l 191 (548)
.+|-..
T Consensus 538 ~~lm~t 543 (574)
T smart00638 538 LVLMET 543 (574)
T ss_pred HHHHhc
Confidence 665543
No 314
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=70.39 E-value=13 Score=30.93 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=59.0
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc--hhhhHhcCChHHHHHhhcC-CChhHHHHHHHHHHhccc
Q 008940 164 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 164 g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 234 (548)
.++..|...+.+.++.++..|+..|-.+..+... +..+.....+..|..++.. .++.|+..++..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3667788888899999999999999999988765 5567777888889999987 688999999988887754
No 315
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=70.12 E-value=52 Score=33.31 Aligned_cols=109 Identities=15% Similarity=0.058 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhhccCcch-hhHhhhcCChH-HHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHH
Q 008940 52 TKVQRAAAGALRTLAFKNDEN-KNQIVECNALP-TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 129 (548)
Q Consensus 52 ~~v~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~-~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 129 (548)
...|..|+.+|+.++..-++. ... ... .|+..|+++...-|..+..++...+...........-....+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~-----~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQE-----IFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH-----HHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 456888999999998753222 222 222 6888999988888888998988887654322111001134456677
Q ss_pred hhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940 130 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 165 (548)
Q Consensus 130 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 165 (548)
+|..+.+..-......+..+-..+......+.+.|.
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 777555444444555555554443444445556666
No 316
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=68.99 E-value=17 Score=27.82 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=39.7
Q ss_pred HHHHHHHHHhChHhHHHHHHHHHHhcC------------CHhhHHHHHHHHHH--cCcHHHHHHHHHHHHHhHH
Q 008940 452 QDLLRAADQYLLEGLKRLCEYTIAQDI------------SLENVSSMYELSEA--FHAISLRHTCILYIMEHFD 511 (548)
Q Consensus 452 ~~ll~~a~~~~~~~l~~~c~~~l~~~l------------~~~n~~~~~~~a~~--~~~~~L~~~~~~~i~~~~~ 511 (548)
.+++..|..|+.++|.+.|.+++..++ +.+....++.--.. .+-..+.+.+.+|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH
Confidence 468899999999999999999997643 33434444332111 1334788889999886543
No 317
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=68.39 E-value=54 Score=31.94 Aligned_cols=110 Identities=12% Similarity=0.089 Sum_probs=64.0
Q ss_pred ChHHHHHhhhcC-------ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC----------CCHHHHHHHH
Q 008940 123 ALQPVIGLLSSC-------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS----------PDVQLREMSA 185 (548)
Q Consensus 123 ~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~----------~~~~v~~~a~ 185 (548)
.+|.++.++.+. +..........+..|. .++.......-..++|.++.++-. +...+|+.|+
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl-~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA 289 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL-DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAA 289 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh-cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHH
Confidence 577777776542 3444555566666665 334444333334578888887732 3457999999
Q ss_pred HHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC-h-hHHHHHHHHHHhcc
Q 008940 186 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN-G-SLQHNAAFALYGLA 233 (548)
Q Consensus 186 ~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-~-~v~~~a~~~L~~l~ 233 (548)
..+..+|........-........+.+.+.++. + .....|+..|..+.
T Consensus 290 ~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 290 RLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 999999955443322222233445555554432 2 33556666666654
No 318
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.10 E-value=7 Score=37.02 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=55.6
Q ss_pred HHHHHHHhhccCcchhhHhhhcCChHHHHHHhc--cCChHHHHHHHHHHHHhhcCChhHHHHHHhc
Q 008940 58 AAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 121 (548)
Q Consensus 58 a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 121 (548)
..+.+++++...++++..+.+.||++.++.-.. +.++-+++.++.+++.|..++.++++.+...
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 567999999989999999999999999887665 6688999999999999999988887776643
No 319
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=67.99 E-value=50 Score=26.43 Aligned_cols=88 Identities=13% Similarity=0.134 Sum_probs=54.8
Q ss_pred HHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCc-chhhHhhhc-CChHHHHHHhccC--
Q 008940 17 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVEC-NALPTLILMLRSE-- 92 (548)
Q Consensus 17 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~-g~i~~Lv~ll~~~-- 92 (548)
..-|.+++..++..... ++..|.+-|++.++.|+.+++++|..++...+ ..+..+.+. .+|..+..+-..+
T Consensus 22 ~~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp 96 (122)
T cd03572 22 YEEIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDP 96 (122)
T ss_pred HHHHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCc
Confidence 34566777655444333 34578888888889999999999999997433 334333332 3344444443322
Q ss_pred ------ChHHHHHHHHHHHHhhc
Q 008940 93 ------DSAIHYEAVGVIGNLVH 109 (548)
Q Consensus 93 ------~~~v~~~a~~~L~~l~~ 109 (548)
...||..|-.++.-|..
T Consensus 97 ~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 97 LKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred ccCcchhHHHHHHHHHHHHHHhc
Confidence 34677777777766643
No 320
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=67.91 E-value=1e+02 Score=28.59 Aligned_cols=151 Identities=13% Similarity=0.111 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhhcc-------CcchhhHhhhcCChHHHHHHhccCC----hHHHHHHHHHHHHhhcCChhHHHHHHhc
Q 008940 53 KVQRAAAGALRTLAFK-------NDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIKKEVLAA 121 (548)
Q Consensus 53 ~v~~~a~~~L~~l~~~-------~~~~~~~~~~~g~i~~Lv~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 121 (548)
.....++..|..++.. +.+++-.+.-.+.+|.++.-+.+++ ......++..|..+|.... .
T Consensus 77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~ 148 (262)
T PF14225_consen 77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------L 148 (262)
T ss_pred CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------C
Confidence 3445566666666642 1112222222334555555555555 1344456667777763211 1
Q ss_pred CChHHHHHhhhcCC----hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940 122 GALQPVIGLLSSCC----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 197 (548)
Q Consensus 122 g~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 197 (548)
+.+..++....... .+....++..|+.-. .|+. ....+-.|+.+|.++.+-++...+.+|..+-...+.
T Consensus 149 ~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~ 221 (262)
T PF14225_consen 149 PNLARILSSYAKGRFRDKDDFLSQVVSYLREAF--FPDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDM 221 (262)
T ss_pred ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--Cchh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccC
Confidence 22333333332221 233333444433321 1222 124667799999999889999999999999877666
Q ss_pred hhhhHhcCChHHHHHhhcCCCh
Q 008940 198 QAGIAHNGGLVPLLKLLDSKNG 219 (548)
Q Consensus 198 ~~~~~~~~~l~~L~~ll~~~~~ 219 (548)
+.. .....+.++.++++++..
T Consensus 222 ~~~-~~~dlispllrlL~t~~~ 242 (262)
T PF14225_consen 222 RSP-HGADLISPLLRLLQTDLW 242 (262)
T ss_pred CCC-cchHHHHHHHHHhCCccH
Confidence 544 444568888999977653
No 321
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=67.44 E-value=22 Score=38.65 Aligned_cols=126 Identities=19% Similarity=0.322 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHh
Q 008940 52 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130 (548)
Q Consensus 52 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 130 (548)
+.++..+..+|+++|-.++..... .+|.|++-|. +....+|...+-+++.+|.. ...+....+|.+...
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~-----YTam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICSS-----YTAMTDRYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHHH-----HHHHHHHhhHHHHHH
Confidence 357788888999998744433322 5777887776 44556777777677777643 233445689999999
Q ss_pred hhcCChHHHHHHHHHHHHhhcCCchhHHHHHh-cC--ChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQ-RG--AVRPLIEMLQSPDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 131 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g--~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 194 (548)
|.++++-+++.+.-.|.+|.... +++ .| .+..++.++ +.++.++..|-.+++.+...
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999997431 222 22 233343333 45667777777777766543
No 322
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=66.91 E-value=3.9 Score=31.61 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=35.9
Q ss_pred hhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchh
Q 008940 297 RRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLD 339 (548)
Q Consensus 297 ~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 339 (548)
-.....+..++..|+.-..+++.|+++.|+.||.|.|.++...
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 3456677888888888888999999999999999999888543
No 323
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=66.43 E-value=77 Score=27.46 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=53.5
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhH
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 114 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 114 (548)
.+|.+++-|...+..-+..|...+..+.......+-.-+=...+.++-..|++.++++...++.+|..|+..++..
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 4566667777777777888888888887642223322222346777778888999999999999999996554443
No 324
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=66.39 E-value=58 Score=36.81 Aligned_cols=232 Identities=17% Similarity=0.112 Sum_probs=121.0
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhH-hhhcCChHHHHHHh-----ccC-----ChHHHHHHHHHHHHh
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ-IVECNALPTLILML-----RSE-----DSAIHYEAVGVIGNL 107 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~g~i~~Lv~ll-----~~~-----~~~v~~~a~~~L~~l 107 (548)
.++.|+..+-++.+++|..+..++..+.......... ..+. .+-.++..+ .+. -..+++.++++|..+
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led-~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~ 156 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLED-LLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY 156 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHH-HHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 4556666667788999999999999887632221111 1111 111111111 111 236888999999888
Q ss_pred hcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH---HhcCChHHHHHhhCCCCHHHHHHH
Q 008940 108 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI---VQRGAVRPLIEMLQSPDVQLREMS 184 (548)
Q Consensus 108 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~~~g~v~~L~~ll~~~~~~v~~~a 184 (548)
..+-..- .-...+..+.+++..+..+++.-.+..+..... .+... .-..+++.+++-+.+.+..++..|
T Consensus 157 l~~~~~s----~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~a----ir~d~l~~~~~~vl~~~i~~L~ds~ddv~~~a 228 (1549)
T KOG0392|consen 157 LKHMDES----LIKETLDILLQMLRQPNWEIRHGGLLGIKYNVA----IRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVA 228 (1549)
T ss_pred HHhhhhH----hhHHHHHHHHHHHcCcchhheechHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhcchHHHHHH
Confidence 6542221 111245677777776655554443333333221 11111 112366777777888888999988
Q ss_pred HHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHH----HHHhcccCCcchHHHHHhcCcccccccchhhhh
Q 008940 185 AFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF----ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA 260 (548)
Q Consensus 185 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~----~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~ 260 (548)
+..+...+..........-...+..+...+..-+. ...+.. .+..++.+.+...-..+
T Consensus 229 a~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~ldd--l~~s~~si~~ll~~l~~~~evl~l~~~---------------- 290 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDD--LSSSTASIMHLLDELCIENEVLDLFEQ---------------- 290 (1549)
T ss_pred HHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhh--cchhhHHHHHHHHHHhhhHHHHHHHHH----------------
Confidence 88887776443221111111122233333332222 111111 22222322211111100
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC
Q 008940 261 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 310 (548)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~ 310 (548)
...+.+.++.++.++++.=..++..++..+..|....
T Consensus 291 -------------~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 291 -------------QNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred -------------hhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1122568899999999988888998999888886543
No 325
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=66.24 E-value=17 Score=32.35 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=51.4
Q ss_pred hhHHHHHhcCCchHHHHhhccCC------------------HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc
Q 008940 29 SIKTRVRMEGGIPPLVELLEFTD------------------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 90 (548)
Q Consensus 29 ~~~~~i~~~g~i~~L~~ll~~~~------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~ 90 (548)
..+..+.+.|++..++.+|+.+- ..+...+.+.|..++.++.+|+..+.+. ++.++..+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 44567777888888888886421 3567888999999999999999888775 333333333
Q ss_pred cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhh
Q 008940 91 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 150 (548)
Q Consensus 91 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 150 (548)
......-..+..++..+..++.+....+.+.. +..++.++....... .-...|..+|
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~gr~~--~~L~~L~~lc 168 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHGRQP--RYLDFLSSLC 168 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT----------------------------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcCCCh--HHHHHHhhhc
Confidence 32222224567777888888888766666544 888888887633221 1234455554
No 326
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=65.27 E-value=1.5e+02 Score=29.30 Aligned_cols=101 Identities=19% Similarity=0.107 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC-----CHHHHHHHHHHHHHhhccCcchhhH-hhhcCChHH
Q 008940 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-----DTKVQRAAAGALRTLAFKNDENKNQ-IVECNALPT 84 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~g~i~~ 84 (548)
++...++.+|.|+..+++..+....+......+.+.+... -..++..=++.|.-+..-..+.+.. +...++++.
T Consensus 112 ~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~ 191 (532)
T KOG4464|consen 112 HVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLEL 191 (532)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHH
Confidence 6788999999999999999999999998888887766421 1234444555555555433455544 556789999
Q ss_pred HHHHhccC---C------------hHHHHHHHHHHHHhhcCC
Q 008940 85 LILMLRSE---D------------SAIHYEAVGVIGNLVHSS 111 (548)
Q Consensus 85 Lv~ll~~~---~------------~~v~~~a~~~L~~l~~~~ 111 (548)
+.+++.++ + .+....++.++.|++.+.
T Consensus 192 lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 192 LTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred HHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 99998742 1 134456777778886553
No 327
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=64.25 E-value=38 Score=36.98 Aligned_cols=128 Identities=13% Similarity=0.210 Sum_probs=88.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
+..+.++..+.-.|+++|-.++...+ ..+|.|++-|+- ....+|...+.+++.+|.+ ...+.+ -.+|.+
T Consensus 942 ~~~~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~----YTam~d-~YiP~I 1011 (1529)
T KOG0413|consen 942 MFSDKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSS----YTAMTD-RYIPMI 1011 (1529)
T ss_pred ccchHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHH----HHHHHH-HhhHHH
Confidence 34567888888899999966555443 467888887764 4577888888888888762 122333 379999
Q ss_pred HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCC--hHHHHHhhhcCChHHHHHHHHHHHHhh
Q 008940 86 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA--LQPVIGLLSSCCSESQREAALLLGQFA 150 (548)
Q Consensus 86 v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~--i~~L~~ll~~~~~~~~~~a~~~L~~l~ 150 (548)
...|.++++-+|++++-.|.+|... ..+...|. +..++.++ +.+++++..|-..++.+.
T Consensus 1012 ~~~L~Dp~~iVRrqt~ilL~rLLq~-----~~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1012 AASLCDPSVIVRRQTIILLARLLQF-----GIVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhh-----hhhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999642 22222332 33333333 566778887777777665
No 328
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=63.21 E-value=13 Score=28.92 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=28.7
Q ss_pred CHhhHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 008940 479 SLENVSSMYELSEAFHAISLRHTCILYIMEH 509 (548)
Q Consensus 479 ~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 509 (548)
+.+++..++.+|..++.+.|.+.|.+++.+|
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 3789999999999999999999999999886
No 329
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=62.90 E-value=32 Score=28.47 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=56.9
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhh
Q 008940 80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFA 150 (548)
Q Consensus 80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~ 150 (548)
.++..|.+-|.++++.++..|+.+|-.+..++ ......+...+++..|.+++.. .++.|+..++..+..-+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 35777888888899999999999999888764 4466777788899999998874 55778888888777665
No 330
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.88 E-value=75 Score=33.54 Aligned_cols=143 Identities=11% Similarity=0.068 Sum_probs=91.2
Q ss_pred HHHHhccCChHHHHHHHHHHHHhh--cCChh---HHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCC----ch
Q 008940 85 LILMLRSEDSAIHYEAVGVIGNLV--HSSPN---IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD----SD 155 (548)
Q Consensus 85 Lv~ll~~~~~~v~~~a~~~L~~l~--~~~~~---~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~----~~ 155 (548)
|.+-|+-+|..+|..|+..+.++- .+.+. -.+.+++. -...+..+|+++.+.++..|..-++...+.. |.
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 344556789999999999998884 22111 12333332 3567889999999999988887666665321 11
Q ss_pred hHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940 156 CKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 156 ~~~~~~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 234 (548)
+ ++ ..++..+.+-+. +...+||......|-.+..++.....+. .+++.+-..|.+....|+..+...|..+-.
T Consensus 258 ~---i~-~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 258 T---IL-IDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred H---HH-HHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 1 10 112233333333 2345788888888999888876654433 256666677777888888888888877753
No 331
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=61.91 E-value=25 Score=28.97 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=55.2
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc--hhhhHhcCChHHHHHhhcC------CChhHHHHHHHHHHhcc
Q 008940 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDS------KNGSLQHNAAFALYGLA 233 (548)
Q Consensus 165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~ 233 (548)
++..+...+.+.++.++..|+..|-.+..+... +..+...+++..+++++.. .++.|+..++..+..-+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 567788889999999999999999999977654 5667777888889999853 45788888888776554
No 332
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=61.91 E-value=33 Score=28.22 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhc
Q 008940 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 67 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 67 (548)
-++.+.+.++..++..+-.... ...++.++.+++. ++......+..|..+.+
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W----p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~e 54 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW----PDFLEDLLQLLQS-SPQHLELVLRILRILPE 54 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS----TTHHHHHHHHHHT-THHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhC----chHHHHHHHHhcc-chhHHHHHHHHHHHHHH
Confidence 4677888889988854321111 1345667777776 45666666777766664
No 333
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=59.85 E-value=1.8e+02 Score=28.64 Aligned_cols=144 Identities=16% Similarity=0.102 Sum_probs=76.6
Q ss_pred hcCChHHHHHHhcc-CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh----c--CChHHHHHHHHHHHHhh
Q 008940 78 ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS----S--CCSESQREAALLLGQFA 150 (548)
Q Consensus 78 ~~g~i~~Lv~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~--~~~~~~~~a~~~L~~l~ 150 (548)
+.+-.+.+-+-+.. +...-|..|+..+..|+...+..-..+ ....+..++. + .+..-+..|+..+..++
T Consensus 208 EddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala 283 (370)
T PF08506_consen 208 EDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQYASNPSNNWRSKDGALYLIGALA 283 (370)
T ss_dssp HHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHH
Confidence 33334444444432 234567789999999975422211111 1122333333 2 34556677888888887
Q ss_pred cCCch------------hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC
Q 008940 151 ATDSD------------CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218 (548)
Q Consensus 151 ~~~~~------------~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~ 218 (548)
..... +...+....++|-|. --.+..|-++..|++.+...-..-+ +..+ .+.++.++..|.+++
T Consensus 284 ~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~-~~~l--~~~~~~l~~~L~~~~ 359 (370)
T PF08506_consen 284 SKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP-KEQL--LQIFPLLVNHLQSSS 359 (370)
T ss_dssp BSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHH--HHHHHHHHHHTTSS-
T ss_pred hhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC-HHHH--HHHHHHHHHHhCCCC
Confidence 55421 123334444555554 1123456677788877777654322 2222 247888999999999
Q ss_pred hhHHHHHHHHH
Q 008940 219 GSLQHNAAFAL 229 (548)
Q Consensus 219 ~~v~~~a~~~L 229 (548)
.-|...|+.++
T Consensus 360 ~vv~tyAA~~i 370 (370)
T PF08506_consen 360 YVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred cchhhhhhhhC
Confidence 88888887764
No 334
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=59.77 E-value=1e+02 Score=26.77 Aligned_cols=75 Identities=17% Similarity=0.119 Sum_probs=49.2
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCch
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 155 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 155 (548)
.++.+++=|...+...+-.|...+..+.......+-.-+-...+..+-..|.+.++++...++.+|..|+..++.
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 455556666655666666677776666544122222222345677777888899999999999999999654443
No 335
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=58.57 E-value=29 Score=28.31 Aligned_cols=70 Identities=11% Similarity=0.109 Sum_probs=55.0
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhccCC--hHHHHHHHHHHHHhh
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSED--SAIHYEAVGVIGNLV 108 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~~~~--~~v~~~a~~~L~~l~ 108 (548)
++..|.+-|+++++.++..|+..|-.+.... ......+...+++..|..++.... +.++..++..+..-+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 4556888888999999999999999999742 445667777889999999887542 348888888887665
No 336
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=58.55 E-value=2.3e+02 Score=35.39 Aligned_cols=266 Identities=15% Similarity=0.117 Sum_probs=128.2
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhh------hcCChHHHHHHh-ccCChHHHHHHHHHHHHhhcCChhHH
Q 008940 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV------ECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIK 115 (548)
Q Consensus 43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~g~i~~Lv~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~ 115 (548)
+...+...+++++..+...+..+..... +..... ....+..+..+- .++++.++......+. ...-
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~-~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~ 558 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDI-ICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFD 558 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhh-hhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchh
Confidence 3445667788888888776666665322 211110 111222222222 2556666555544443 1111
Q ss_pred HHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940 116 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 195 (548)
Q Consensus 116 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 195 (548)
....+.+.+..+...+.+..-..+..+...+++++..++.........-.+..+-.+..+....+...++.-+..+....
T Consensus 559 ~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~ 638 (2341)
T KOG0891|consen 559 AQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISS 638 (2341)
T ss_pred hhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHH
Confidence 22344455666777777777788888889999998776643332222222222222222222222222222222222111
Q ss_pred cchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHh
Q 008940 196 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 275 (548)
Q Consensus 196 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~ 275 (548)
.....-.-...+..+...+.+.+..+...+..++..||...... +...++
T Consensus 639 ~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~--------~~~~~~---------------------- 688 (2341)
T KOG0891|consen 639 PVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEE--------MVKWVD---------------------- 688 (2341)
T ss_pred HHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccch--------hhhccc----------------------
Confidence 11111111123344556666666667777777777776432200 000000
Q ss_pred hhhhhhHHHHHHH-HhhhhhhhhhHHHHhhhccCCCcc--ceeeecCCchHHHHHhhcCCCC-ccchhhHHHHHHHh
Q 008940 276 IHGRVLNHLLYLM-RVAEKGVQRRVALALAHLCSPDDQ--RTIFIDGGGLELLLGLLGSTNP-KQQLDGAVALFKLA 348 (548)
Q Consensus 276 ~~~~~~~~L~~ll-~~~~~~~~~~a~~aL~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~ 348 (548)
..++.+...+ ..++..-+.++.++++++.....- .......-++..|...+..... .++..+...+.++.
T Consensus 689 ---~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 689 ---ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred ---hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 1122222222 336677788889999999765442 2222233445556555554433 33555555555443
No 337
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=57.81 E-value=92 Score=32.68 Aligned_cols=101 Identities=21% Similarity=0.103 Sum_probs=49.0
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 119 (548)
+..|-+.+-++++.++..|+-.++-...+..+.+.. ++..|.+.+.+++..++..++.-|+-.-.++ .++.+.
T Consensus 417 L~qldkylys~~~~ikaGaLLgigi~~~gv~ne~dp-----alALLsdyv~~~~s~~ri~aIlGLglayaGs--q~e~V~ 489 (878)
T KOG2005|consen 417 LEQLDKYLYSDESYIKAGALLGIGISNSGVFNECDP-----ALALLSDYLQSSSSIHRIGAILGLGLAYAGS--QREEVL 489 (878)
T ss_pred HHHHHHHhhcCCchhhhccceeeeeeccccccccCH-----HHHHHHHhccCCCceeehHHhhhhHHhhcCC--chHHHH
Confidence 334444444455555555555444443321111111 2333444555667777777776666543332 123322
Q ss_pred hcCChHHHHHhhhcCCh--HHHHHHHHHHHHhhcC
Q 008940 120 AAGALQPVIGLLSSCCS--ESQREAALLLGQFAAT 152 (548)
Q Consensus 120 ~~g~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~~ 152 (548)
. .|..++.+.+. ++...|..+|+.+..+
T Consensus 490 ~-----lL~Pi~~d~~~~~ev~~~aslsLG~IfvG 519 (878)
T KOG2005|consen 490 E-----LLSPIMFDTKSPMEVVAFASLSLGMIFVG 519 (878)
T ss_pred H-----HHhHHhcCCCCchhHHHHHHhhcceeEEe
Confidence 2 55556665543 4666666666665544
No 338
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=56.10 E-value=33 Score=34.15 Aligned_cols=45 Identities=11% Similarity=0.291 Sum_probs=36.7
Q ss_pred cCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchh
Q 008940 477 DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQ 524 (548)
Q Consensus 477 ~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~ 524 (548)
.+..+|++.++..|..|..+.|...|++|+..|... ..+|..|+.
T Consensus 184 ~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~---~naf~~L~q 228 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMA---DNAFLELFQ 228 (521)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---hHHHHHHHH
Confidence 478899999999999999999999999999976433 345555544
No 339
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=56.08 E-value=1.1e+02 Score=31.58 Aligned_cols=136 Identities=18% Similarity=0.088 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC--ChHHHHHHHHHH---HHhhcCChh-HH---HHHHhc
Q 008940 51 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVI---GNLVHSSPN-IK---KEVLAA 121 (548)
Q Consensus 51 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~--~~~v~~~a~~~L---~~l~~~~~~-~~---~~~~~~ 121 (548)
++.+|.+.+..|..-.. .. -.-..++..+...+.+. +..++..++..+ .......+. .- ...+..
T Consensus 296 ~~~lq~kIL~~L~kS~~----Aa--~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~ 369 (501)
T PF13001_consen 296 SPRLQEKILSLLSKSVI----AA--TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILS 369 (501)
T ss_pred CHHHHHHHHHHHHHhHH----HH--hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHh
Confidence 46666666665554321 00 00112333444444444 556777776666 444333222 11 223334
Q ss_pred CChHHHHH----hhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940 122 GALQPVIG----LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 122 g~i~~L~~----ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 194 (548)
++.|.+-. --...+.+.+..+-.+|+.++...+... .-+-+.+..|.+-|..++++++...-.||..++..
T Consensus 370 ~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 370 QGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred cCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 55655510 1112346788888999999997766542 12356888999999888999999999999988843
No 340
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=54.37 E-value=80 Score=26.01 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=54.9
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhccC-ChH---HHHHHHHHHHHhhc
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSE-DSA---IHYEAVGVIGNLVH 109 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~~~-~~~---v~~~a~~~L~~l~~ 109 (548)
++..|.+-|+++++.++..|+..|-.+..+. +.....+....++..|..++.+. ... |+..++..+...+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3457888888999999999999999998854 45667777778899999988743 333 88888888776653
No 341
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=52.93 E-value=1.3e+02 Score=27.68 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=50.2
Q ss_pred HHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC--ChHHHHHHHHHHHHhhcCC
Q 008940 34 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSS 111 (548)
Q Consensus 34 i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~--~~~v~~~a~~~L~~l~~~~ 111 (548)
+.+....++++++++.++..+- ..++-....+-...-..+..|-++.|.+++.++ +.-+|..|+.+|..++...
T Consensus 69 ~re~~A~~~li~l~~~~~~~~~----~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~ 144 (249)
T PF06685_consen 69 FREERALPPLIRLFSQDDDFLE----DLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEG 144 (249)
T ss_pred HhhhhhHHHHHHHHcCCcchHH----HHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcC
Confidence 4556778888888876553111 111111110001111122245678888888866 4568899999999999888
Q ss_pred hhHHHHHHh
Q 008940 112 PNIKKEVLA 120 (548)
Q Consensus 112 ~~~~~~~~~ 120 (548)
+..|+.+++
T Consensus 145 ~~~Re~vi~ 153 (249)
T PF06685_consen 145 PISREEVIQ 153 (249)
T ss_pred CCCHHHHHH
Confidence 877777665
No 342
>PLN03205 ATR interacting protein; Provisional
Probab=52.43 E-value=2e+02 Score=28.16 Aligned_cols=108 Identities=16% Similarity=0.225 Sum_probs=66.2
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhcc--CcchhhHhhhcCChHHHHHHhc-----cCChHHHHHHHHHHHHhhcCC
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPTLILMLR-----SEDSAIHYEAVGVIGNLVHSS 111 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~Lv~ll~-----~~~~~v~~~a~~~L~~l~~~~ 111 (548)
.+++|+.+..-++..+..++++.|..+..+ +++.+-.....--.-.|++++. .....++..|+.++.-+....
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 345677777778888888888887766553 2222222222212334444443 445678888887777665443
Q ss_pred h--hHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHH
Q 008940 112 P--NIKKEVLAAGALQPVIGLLSSCC-SESQREAALLL 146 (548)
Q Consensus 112 ~--~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L 146 (548)
. .-|+.+....++..+.++|+.+. ..+++.+...|
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLL 441 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLF 441 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 3 34666666678888999998754 45666666543
No 343
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=51.99 E-value=1.6e+02 Score=25.64 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=55.5
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 158 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 158 (548)
.++.++++..+++..++..|+.++..+....-. --...+|.++.+..++++.++..|...+..+....+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-----nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLV-----NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-----ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 466777888899999999999999877542110 0012689999999999999999999999999765554433
No 344
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=51.77 E-value=67 Score=26.23 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=54.5
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhhhcCC--hHHHHHHHHHHHHhh
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCC--SESQREAALLLGQFA 150 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~ 150 (548)
++..|-+-+.++++.++..|+.+|-.+..++ ......+...+++..|..++.+.. +.++..++..+..-+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 5667777888899999999999999998774 445677777888999999887754 337777777776665
No 345
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.34 E-value=84 Score=30.75 Aligned_cols=114 Identities=13% Similarity=0.165 Sum_probs=76.6
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 119 (548)
+..|+..+++.+..+|..|+..|..+....+.....- ...+++.+..+..+.+..+|.....++-.+.......+....
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~-~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSH-LYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHH-HHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 4567777889999999999999999887434333222 223567777777888899999999888886543222211111
Q ss_pred hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc
Q 008940 120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 154 (548)
Q Consensus 120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 154 (548)
..-..+.+...+.+..++++..+...|.-+....+
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 12234455555667778899988888888875543
No 346
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=49.71 E-value=74 Score=32.94 Aligned_cols=138 Identities=12% Similarity=0.072 Sum_probs=79.6
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC--CHHHHHHHHHHH---HHhhccCcchhhHhhhcCC
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGAL---RTLAFKNDENKNQIVECNA 81 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~v~~~a~~~L---~~l~~~~~~~~~~~~~~g~ 81 (548)
..++.+|.+.+..|..-... .-.-...+..+...+.++ +..++..++..+ .....+.+...-......+
T Consensus 294 pa~~~lq~kIL~~L~kS~~A------a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i 367 (501)
T PF13001_consen 294 PASPRLQEKILSLLSKSVIA------ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVI 367 (501)
T ss_pred CCCHHHHHHHHHHHHHhHHH------HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHH
Confidence 44556666655555442110 001112233333344454 567777777777 5555433332222222222
Q ss_pred hHHHHHHhc--------cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcC
Q 008940 82 LPTLILMLR--------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 152 (548)
Q Consensus 82 i~~Lv~ll~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 152 (548)
...+.+.+. ..+...|..+-.+|+.|+...+..- ..+.+.+..|.+-|.++.++++...-.+|..++..
T Consensus 368 ~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 368 LSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 333333332 2467899999999999998776541 12345778888888888899998888888888744
No 347
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=49.35 E-value=67 Score=36.35 Aligned_cols=150 Identities=15% Similarity=0.140 Sum_probs=82.1
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhH-HHHHHhcCChHHHHHhh---------hc-CChHHHHHHHHHHHH
Q 008940 80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI-KKEVLAAGALQPVIGLL---------SS-CCSESQREAALLLGQ 148 (548)
Q Consensus 80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~~L~~ll---------~~-~~~~~~~~a~~~L~~ 148 (548)
+.++.|+..+-++.+++|+-+.-+++.+......- -....+.-.+ .++..+ .+ --..+++.++++|..
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~-rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLI-RLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHH-HHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 35667777777899999999999998886432211 0111111111 111111 10 113578888888888
Q ss_pred hhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHH
Q 008940 149 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 228 (548)
Q Consensus 149 l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 228 (548)
+..+.... .-...++.+.+++..++.+++.-.+..+.........-.......+++..+..|.+.+..++..|+..
T Consensus 156 ~l~~~~~s----~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~ 231 (1549)
T KOG0392|consen 156 YLKHMDES----LIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQF 231 (1549)
T ss_pred HHHhhhhH----hhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Confidence 76442221 11245677777777766666554444443332210000001111345556677788888898888888
Q ss_pred HHhccc
Q 008940 229 LYGLAD 234 (548)
Q Consensus 229 L~~l~~ 234 (548)
+.....
T Consensus 232 l~~~~s 237 (1549)
T KOG0392|consen 232 LVPAPS 237 (1549)
T ss_pred hhhhhH
Confidence 877654
No 348
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=49.15 E-value=27 Score=35.01 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=48.3
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCC-hHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940 170 IEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGG-LVPLLKLLDSKNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 170 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 234 (548)
-.+...++++++..+..++++++...+++.......- -..+++++..+.+++-+.+..++..+..
T Consensus 334 k~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 334 KSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3334467899999999999999998888765544333 3347788888888887777778777764
No 349
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=48.89 E-value=1.4e+02 Score=30.19 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=56.6
Q ss_pred ccEEEEeCCeEEEchHHHHhcccHH--HHhhhcC----------CCCCCCCCceecCCCCHHHHHHHHHHHhcCccccch
Q 008940 381 SDVTFLVEGRRFYAHRICLLASSDA--FRAMFDG----------GYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTL 448 (548)
Q Consensus 381 ~Dv~~~~~~~~~~~h~~il~~~s~~--f~~~~~~----------~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~ 448 (548)
.-+.+.|||..+..-+..|.. -|- ...+... +.-....++..++ =+|..|..+++|.+||++..+.
T Consensus 31 ~~i~lNVGG~r~~l~~~tL~~-~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFD-R~P~~F~~Vl~fYrtGkLH~p~ 108 (477)
T KOG3713|consen 31 RRVRLNVGGTRHELYWSTLKR-FPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFD-RHPGAFAYVLNFYRTGKLHVPA 108 (477)
T ss_pred cEEEEeeCCeeEEehHHHHhh-CchhHHHHHHhcccchhhhhhccccCcccCeeeec-cChHHHHHHHHHHhcCeecccc
Confidence 357888899777766665554 111 1111110 0111223455553 4899999999999999998876
Q ss_pred Hh-HHHHHHHHHHhChHh--HHHHHHHHHHh
Q 008940 449 DI-AQDLLRAADQYLLEG--LKRLCEYTIAQ 476 (548)
Q Consensus 449 ~~-~~~ll~~a~~~~~~~--l~~~c~~~l~~ 476 (548)
+. .....+=-+++++++ +-.-|.....+
T Consensus 109 ~vC~~~F~eEL~yWgI~~~~le~CC~~~~~~ 139 (477)
T KOG3713|consen 109 DVCPLSFEEELDYWGIDEAHLESCCWMRYRQ 139 (477)
T ss_pred ccchHHHHHHHHHhCCChhhhhHHhHHHHhh
Confidence 65 345556678888865 44455444443
No 350
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=48.84 E-value=1.5e+02 Score=36.73 Aligned_cols=197 Identities=18% Similarity=0.132 Sum_probs=107.5
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcC
Q 008940 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 122 (548)
Q Consensus 43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 122 (548)
+...+.++.-.++..+...+++++..++...........+..+-.+-.+.-..+...+..-+..+....+..-...+ ..
T Consensus 570 ~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v-~~ 648 (2341)
T KOG0891|consen 570 LFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYV-GP 648 (2341)
T ss_pred HHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhc-Cc
Confidence 33444555677888888888888887663333322222222232333333344444444444444322222211111 23
Q ss_pred ChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcc--hh
Q 008940 123 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN--QA 199 (548)
Q Consensus 123 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~--~~ 199 (548)
.+..++..+.+....+...+..++..||...-.-....++ ..++.+.+.+.+ ++..-+..+.+++++++..... ..
T Consensus 649 ~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p 727 (2341)
T KOG0891|consen 649 ILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDP 727 (2341)
T ss_pred hHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecc
Confidence 4456666677777778888888888888554322222333 556666666654 4556678899999999866533 22
Q ss_pred hhHhcCChHHHHHhhcCCC-hhHHHHHHHHHHhcccCCcchHH
Q 008940 200 GIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVAD 241 (548)
Q Consensus 200 ~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~ 241 (548)
.......+..+...+..+. ..+++.+...++++...+.....
T Consensus 728 ~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~~~~ 770 (2341)
T KOG0891|consen 728 YLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPYKHK 770 (2341)
T ss_pred cccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchhHHH
Confidence 2222234455555555443 45666777777766554444333
No 351
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=48.48 E-value=3.9e+02 Score=28.96 Aligned_cols=102 Identities=23% Similarity=0.204 Sum_probs=70.0
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 118 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 118 (548)
.|+.|..+-.++-..++..++..+..+..+.|+.-.. .+..+|.-|.+++..+-..|...|.+|....|..+..+
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 4455555555666889999999999998866665443 56678899999999999999999999987778765443
Q ss_pred HhcCChHHHHHhhhcCC--hHHHHHHHHHHHHhh
Q 008940 119 LAAGALQPVIGLLSSCC--SESQREAALLLGQFA 150 (548)
Q Consensus 119 ~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~ 150 (548)
+ .-+.+++-.++ ......|+-.|..+.
T Consensus 380 i-----~EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 380 I-----DEIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred H-----HHHHHHHcccCccccceeehhhhhhhhH
Confidence 3 34455554443 334445555555544
No 352
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=48.26 E-value=69 Score=28.49 Aligned_cols=119 Identities=12% Similarity=0.084 Sum_probs=47.1
Q ss_pred chhhHhhhcCChHHHHHHhccC---C---------------hHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh
Q 008940 71 ENKNQIVECNALPTLILMLRSE---D---------------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132 (548)
Q Consensus 71 ~~~~~~~~~g~i~~Lv~ll~~~---~---------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 132 (548)
..+..+.+.|+...++.++..+ . .++...+.++|..++.++.+++..+.+. ++.+...+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 4555667778888888887621 1 3567789999999999998887777763 333333332
Q ss_pred cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 133 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 194 (548)
......-..+..++..+..+++.....+.+. .+..++.++...... ..-+..|..+|..
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~~gr~--~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRKHGRQ--PRYLDFLSSLCVC 170 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT------------------------------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHHcCCC--hHHHHHHhhhccc
Confidence 2111111234566666766666655555443 478888888763322 2234555666543
No 353
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=47.29 E-value=3.4e+02 Score=28.01 Aligned_cols=139 Identities=13% Similarity=0.082 Sum_probs=78.7
Q ss_pred HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC--------ChHHHHHHHHHHHHhhcCCchh
Q 008940 85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--------CSESQREAALLLGQFAATDSDC 156 (548)
Q Consensus 85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--------~~~~~~~a~~~L~~l~~~~~~~ 156 (548)
+.+.+...++..+..|+..|.. ++.+. -.+|.++.++... +-+.........+.|. +++..
T Consensus 212 It~a~~g~~~~~r~eAL~sL~T----DsGL~------~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl-~Np~i 280 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLET----DSGLQ------QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL-DNPNI 280 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhcc----CccHH------HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh-cCCcc
Confidence 3344444555566655554431 12221 1356666666542 2334455556666664 44555
Q ss_pred HHHHHhcCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC--ChhHHHH
Q 008940 157 KVHIVQRGAVRPLIEMLQS----------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHN 224 (548)
Q Consensus 157 ~~~~~~~g~v~~L~~ll~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~ 224 (548)
...-.-..++|.++.++-+ ....+|..|+..+..+|.+......-.....+..+.+.+.+. .......
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 4444445678888888632 345699999999999997765543334444555666665543 3445555
Q ss_pred HHHHHHhccc
Q 008940 225 AAFALYGLAD 234 (548)
Q Consensus 225 a~~~L~~l~~ 234 (548)
++..|..|..
T Consensus 361 ai~gL~~lg~ 370 (576)
T KOG2549|consen 361 AIAGLSELGH 370 (576)
T ss_pred HHHHHHHhhh
Confidence 6666666653
No 354
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.22 E-value=46 Score=38.24 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=84.3
Q ss_pred CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 117 (548)
Q Consensus 38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 117 (548)
|++|.|-.-|.+++..+|..|...++.+.. .+...-.--........+.-+.+.+.++|..++....+.-..++.....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~-~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFS-DKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHh-cchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 788999988999999999999999999986 3333322011123445555566788899988888877765555544222
Q ss_pred HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940 118 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 193 (548)
Q Consensus 118 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 193 (548)
.. ..+.--..+.+++++.....++... .. ......+... .+..+.+.+++....||..|...|..+-.
T Consensus 338 ~~-----~~~~l~~~~~D~~~rir~~v~i~~~-~v-~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 338 ST-----ILLALRERDLDEDVRVRTQVVIVAC-DV-MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HH-----HHHHHHhhcCChhhhheeeEEEEEe-eh-hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 11 1111111233343332222111111 00 1111122222 55666677777888888888877776654
No 355
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=46.74 E-value=17 Score=36.34 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=45.8
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhh
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 150 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 150 (548)
.+..+.++++++++..++++++.+....+..+-....-..+++++..+.+++-+.++.++..+.
T Consensus 335 ~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 335 SLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 3344679999999999999998775554333223334456677777788888888888887775
No 356
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=46.53 E-value=66 Score=26.73 Aligned_cols=28 Identities=43% Similarity=0.520 Sum_probs=19.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940 166 VRPLIEMLQSPDVQLREMSAFALGRLAQ 193 (548)
Q Consensus 166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~ 193 (548)
+++|+++|.++++.+...|+.+|.+-..
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 6788888888888888888888887653
No 357
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=44.83 E-value=17 Score=35.13 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=40.4
Q ss_pred CceecCCCCHHHHHHHHHHHhcCcc-c------------cchHhHHHHHHHHHHhChHhHHHHHHHHHHh
Q 008940 420 RDIEIPNIRWEVFELMMRFIYTGSV-D------------VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQ 476 (548)
Q Consensus 420 ~~i~l~~~~~~~~~~~l~~~Yt~~~-~------------~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~ 476 (548)
+.+.+.++..+.+-.+|.....-.+ . +..+|+..++.+|.+|++++|...|..|+.+
T Consensus 106 g~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDr 175 (620)
T KOG4350|consen 106 GKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDR 175 (620)
T ss_pred cceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhc
Confidence 3677777777665555544322111 1 3456788899999999999999999998865
No 358
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=43.85 E-value=1.8e+02 Score=24.75 Aligned_cols=106 Identities=13% Similarity=0.145 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhhhCh----------hhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhh-c
Q 008940 11 SVIRRAADAITNLAHENS----------SIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-C 79 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~----------~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~ 79 (548)
..+.-+++.|..+-.... .... +.+....+.|.+.+.++++.+-..+++.+..+... .+..+.. .
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~-~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~---~~~~Lk~el 112 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLIN-LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR---FRSHLKLEL 112 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 445566666666543211 2222 34456677777777777788999999999999852 2222221 1
Q ss_pred C-ChHHHHH-HhccCC--hHHHHHHHHHHHHhhcCChhHHHHHHh
Q 008940 80 N-ALPTLIL-MLRSED--SAIHYEAVGVIGNLVHSSPNIKKEVLA 120 (548)
Q Consensus 80 g-~i~~Lv~-ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~ 120 (548)
+ .+..++. ++.+++ ...|..++.++..++.+..-..+...+
T Consensus 113 e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~N 157 (168)
T PF12783_consen 113 EVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVN 157 (168)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 2 3344444 565443 468888999999999775544454444
No 359
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=42.80 E-value=1.1e+02 Score=25.03 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhh
Q 008940 53 KVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 108 (548)
Q Consensus 53 ~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~ 108 (548)
-++.+.+.++..++..+ |.. ..+.++.++..+.. ++......+.+|..+.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~-----Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~ 53 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQ-----WPDFLEDLLQLLQS-SPQHLELVLRILRILP 53 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT-----STTHHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhh-----CchHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 45666777777777531 111 23466777777775 4566666777776664
No 360
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=42.03 E-value=3.5e+02 Score=27.16 Aligned_cols=188 Identities=14% Similarity=0.075 Sum_probs=91.1
Q ss_pred HHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc-CChHHHHHHHHHHHHhhcCCh
Q 008940 34 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSP 112 (548)
Q Consensus 34 i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~~v~~~a~~~L~~l~~~~~ 112 (548)
.+....+..|+.++.++|+..|......|..+-......+..+.+. +...+.+.+.. ....-....+++++.+..+..
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~-i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS-INNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH-HHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 3445667789999999999999999999999876555555555544 66667777763 344556667778887765422
Q ss_pred -hHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 008940 113 -NIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190 (548)
Q Consensus 113 -~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~ 190 (548)
..++.... =....++-+.+... .........++..++..++..... ++..++..=-..++.-...-+.-+..
T Consensus 208 ~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~WP~t~s~Kev~FL~el~~ 281 (409)
T PF01603_consen 208 VPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHWPKTNSQKEVLFLNELEE 281 (409)
T ss_dssp SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS-SS-HHHHHHHHHHHHH
T ss_pred CCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhCCCCCchhHHHHHHHHHH
Confidence 11111111 01122233333332 222333444444444443433222 22223333223444444444444444
Q ss_pred hhcCCcch-hhhHhcCChHHHHHhhcCCChhHHHHHHHH
Q 008940 191 LAQDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 228 (548)
Q Consensus 191 l~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 228 (548)
+...-+.. -.-........+...+.+.+..|.+.|+..
T Consensus 282 il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~ 320 (409)
T PF01603_consen 282 ILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYF 320 (409)
T ss_dssp HHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGG
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44332211 111111223345555667777776666543
No 361
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.77 E-value=5.1e+02 Score=28.40 Aligned_cols=125 Identities=13% Similarity=0.137 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh
Q 008940 53 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132 (548)
Q Consensus 53 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 132 (548)
.+...|+..|...+. .+.....+...+++..+.+... +.|+....+ -+.+.+...+..+-+-++
T Consensus 308 ~Lvs~Al~FLt~V~~-r~~y~~~F~~~~vl~~i~e~Vv-------------lpN~~lR~e--DeElFED~pleYiRRDlE 371 (960)
T KOG1992|consen 308 YLVSKALQFLTSVSR-RPHYAELFEGENVLAQICEKVV-------------LPNLILREE--DEELFEDNPLEYIRRDLE 371 (960)
T ss_pred HHHHHHHHHHHHHHh-hhhhHhhhcchHHHHHHHHhhc-------------ccccccchh--hHHHhccCHHHHHHHhcc
Confidence 344556666666665 3444444444455544444333 233322211 255666667888888888
Q ss_pred cCChHHH-HHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhh-CC--CCHHHHHHHHHHHHHhhcC
Q 008940 133 SCCSESQ-REAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QS--PDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 133 ~~~~~~~-~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll-~~--~~~~v~~~a~~~L~~l~~~ 194 (548)
.+|.+.| +.|+..+..|+...+.....++. +.++.+++-. ++ .+..-+..+......++..
T Consensus 372 GsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik 436 (960)
T KOG1992|consen 372 GSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIK 436 (960)
T ss_pred cCCcchhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHhccCCCccccccchhhhhhHHHHhh
Confidence 8886654 56677888888665333322222 2333333332 22 3444556666666666644
No 362
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.23 E-value=1.9e+02 Score=33.42 Aligned_cols=99 Identities=11% Similarity=0.071 Sum_probs=51.9
Q ss_pred cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc----C---ChHHHHHHHHHHHHhhcCCchhHHHHHhc
Q 008940 91 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS----C---CSESQREAALLLGQFAATDSDCKVHIVQR 163 (548)
Q Consensus 91 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 163 (548)
.+..+++.....++.++.....+. .. .| .+.+.+++++ . ..++.+.+-..|.-++++.-.....-.-.
T Consensus 853 ~~~~evr~~sl~~l~silet~ge~---ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGEH---LL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccchh---hc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence 445677777778887776443221 11 22 4444444432 1 23455555555555554321111111223
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHHhhcC
Q 008940 164 GAVRPLIEMLQS-PDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 164 g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~ 194 (548)
++++.+...-+. .|..+--.|.+.+|+++..
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDf 959 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDF 959 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHH
Confidence 455665555543 4666777888888887744
No 363
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=40.85 E-value=3.6e+02 Score=29.54 Aligned_cols=138 Identities=20% Similarity=0.139 Sum_probs=80.3
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH-HHHhc
Q 008940 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK-EVLAA 121 (548)
Q Consensus 43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~ 121 (548)
+...+.+++...-...+.++.+++.-..-.... .....+.-..-.+..-..+.....++|..++...++... .+.+.
T Consensus 446 l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d~ 523 (727)
T PF12726_consen 446 LLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSDP 523 (727)
T ss_pred HHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCc
Confidence 334444556666666666666666411111111 111222223333333346677888999999887766544 44457
Q ss_pred CChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940 122 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 192 (548)
Q Consensus 122 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 192 (548)
+....+..++-+++.++...|...|..... .. |-.+.+-.+++..-........+.|..+.
T Consensus 524 ~~~~~i~s~lfsp~~~l~qaA~~llk~~~d--~~--------~R~e~i~~ll~~~~~~tL~ai~~~l~~~~ 584 (727)
T PF12726_consen 524 DAAQAIWSLLFSPDDDLYQAAQDLLKQAFD--VD--------GRLEAIQALLQSNFSPTLSAINWSLRQLT 584 (727)
T ss_pred chhhHHHhheeCCChHHHHHHHHHHHHHhc--CC--------cHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999888863 22 23344444454433334444455555554
No 364
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=40.77 E-value=66 Score=26.49 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=53.5
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhhhcCC-hH---HHHHHHHHHHHhh
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCC-SE---SQREAALLLGQFA 150 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~---~~~~a~~~L~~l~ 150 (548)
++..|.+-|.++++.++..|+.+|-.+..++ +.....+....++..|.+++.+.. .. |+..+...+....
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 5667778888899999999999999998776 455667767778889999887644 32 7777777666554
No 365
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=39.26 E-value=1.7e+02 Score=28.42 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=61.6
Q ss_pred cEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCC----CCCCceecCCCCHHHHHHHHHHHhcCccccchHhHHHHH--
Q 008940 382 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE----KDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLL-- 455 (548)
Q Consensus 382 Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e----~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll-- 455 (548)
-+.+.+.|+.|..+|.-|.-.- ..++.+.-+| .+.++. .-|-+|+.|+.+|.|--||++..+......-+
T Consensus 41 ~lvlNvSGrRFeTWknTLeryP---dTLLGSsEkeFFy~~dt~eY-FFDRDPdiFRhvLnFYRTGkLHyPR~ECi~AyDe 116 (632)
T KOG4390|consen 41 LLVLNVSGRRFETWKNTLERYP---DTLLGSSEKEFFYDEDTGEY-FFDRDPDIFRHVLNFYRTGKLHYPRHECISAYDE 116 (632)
T ss_pred EEEEeccccchhHHHhHHHhCc---hhhhCCcchheeecCCcccc-cccCChHHHHHHHHHhhcCcccCchHHHHHHhhh
Confidence 4566678999999998876433 3444332221 122233 33569999999999999999988765433222
Q ss_pred HHHHHhChHhHHHHHHHHHHhcCCHhhHHHHH
Q 008940 456 RAADQYLLEGLKRLCEYTIAQDISLENVSSMY 487 (548)
Q Consensus 456 ~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~ 487 (548)
++|-+=-+|+|..-|+..=-+.-..+|+..+.
T Consensus 117 ELaF~Gl~PeligDCCyEeYkDrkrENaERL~ 148 (632)
T KOG4390|consen 117 ELAFYGLVPELIGDCCYEEYKDRKRENAERLQ 148 (632)
T ss_pred hhhHhcccHHHHhhhhhHHHhhhhhhhHHHhh
Confidence 23333346888888854333333344554443
No 366
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=38.03 E-value=1.7e+02 Score=31.54 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC-ChHHHHHHHHHHHHhh
Q 008940 93 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFA 150 (548)
Q Consensus 93 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~ 150 (548)
.+..|..++.+|+.+....+...-.+.+...++.|+++|... +..+...|+.+|..|.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 457788999999999988787778889999999999998754 4556677777777776
No 367
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=37.16 E-value=1.3e+02 Score=22.37 Aligned_cols=64 Identities=9% Similarity=0.180 Sum_probs=43.8
Q ss_pred cCCchHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc----cCChHHHHHHHHHHH
Q 008940 37 EGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----SEDSAIHYEAVGVIG 105 (548)
Q Consensus 37 ~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~----~~~~~v~~~a~~~L~ 105 (548)
...+.++..++. .++.++|+..+.++.++..... .-... |.+.++..++ ++++.+...|..++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~S-GW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKS-GWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHh-ccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 456678888764 4578999999999999996322 22233 4666666654 557778877776654
No 368
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=36.81 E-value=3.9e+02 Score=25.65 Aligned_cols=143 Identities=21% Similarity=0.268 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHhhccCcchhhHhhhc-----------CChHHHHHHhc------cCChHHHHHHHHHHHHhhcCChh
Q 008940 51 DTKVQRAAAGALRTLAFKNDENKNQIVEC-----------NALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPN 113 (548)
Q Consensus 51 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----------g~i~~Lv~ll~------~~~~~v~~~a~~~L~~l~~~~~~ 113 (548)
...+|..|+.++.....+|++.+..+.+. .....|+..|- +.|+--.-.|+.+|..+..++++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 47899999999999999888888776542 11223555444 23444455788899999999998
Q ss_pred HHHHHHhc------------CChHHHHHhhhc-----CChHHHHHHHHHHHHhhcCCchhHHHHHhc-CChHHHHHhhCC
Q 008940 114 IKKEVLAA------------GALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQR-GAVRPLIEMLQS 175 (548)
Q Consensus 114 ~~~~~~~~------------g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~v~~L~~ll~~ 175 (548)
.|+....- ..++.+..+|.. .++.++..-+..|..-..+++.....+... +.++.|++....
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 87776532 124555555543 234444444445554445677777777665 478999987543
Q ss_pred ---CCHHHHHHHHHHHHHhhc
Q 008940 176 ---PDVQLREMSAFALGRLAQ 193 (548)
Q Consensus 176 ---~~~~v~~~a~~~L~~l~~ 193 (548)
.++-++-.++..|+-+-.
T Consensus 211 ~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHH
Confidence 355566666666655443
No 369
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=36.51 E-value=1.1e+02 Score=25.55 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=11.4
Q ss_pred hHHHHHHHHhhhhhhhhhHHHHhhh
Q 008940 281 LNHLLYLMRVAEKGVQRRVALALAH 305 (548)
Q Consensus 281 ~~~L~~ll~~~~~~~~~~a~~aL~~ 305 (548)
+.+|+.+|.+.+..+...|+.+|.+
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~ 120 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKN 120 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4455555555555555555555543
No 370
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=36.46 E-value=95 Score=24.57 Aligned_cols=39 Identities=8% Similarity=0.163 Sum_probs=31.5
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHh
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 120 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 120 (548)
+++.|+.-|.++++++...|..+|...+.+. ...+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 5788999999999999999999999998775 44444443
No 371
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=36.02 E-value=3e+02 Score=30.16 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHhhcCCchhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhh
Q 008940 136 SESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 214 (548)
Q Consensus 136 ~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll 214 (548)
..+......+|..++..++.....+.. .+....++.++-++++++.+.|...|..... ...| .+.+-.++
T Consensus 495 ~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d-~~~R--------~e~i~~ll 565 (727)
T PF12726_consen 495 GQITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD-VDGR--------LEAIQALL 565 (727)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc-CCcH--------HHHHHHHH
Confidence 345666778888888777766665544 7889999999999999999999999999874 3322 33344444
Q ss_pred cCCChhHHHHHHHHHHhccc
Q 008940 215 DSKNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 215 ~~~~~~v~~~a~~~L~~l~~ 234 (548)
++.-........++|.++..
T Consensus 566 ~~~~~~tL~ai~~~l~~~~~ 585 (727)
T PF12726_consen 566 QSNFSPTLSAINWSLRQLTK 585 (727)
T ss_pred HHhHHHHHHHHHHHHHHHHh
Confidence 43333333444445555543
No 372
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.00 E-value=7.4e+02 Score=30.20 Aligned_cols=110 Identities=18% Similarity=0.088 Sum_probs=56.0
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC-ChHHHHHHHHHHHHhhcCChhHHHHHHhc
Q 008940 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAA 121 (548)
Q Consensus 43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 121 (548)
++..+..+++..+..+..+++.++.. .... .+. .+..+..++-+.+. ++-.|.--.-+++.+-.+....-..-...
T Consensus 881 ~~~sl~~~~p~~rc~~~ea~arLaq~-v~~~-~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~ 957 (2067)
T KOG1822|consen 881 IVNSLINPNPKLRCAAAEALARLAQV-VGSA-PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN 957 (2067)
T ss_pred HhhhhccCChHHHHHHHHHHHHHHHh-cccc-chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence 33444456677777777777777652 1111 111 11344555555543 33333333334444422211111111112
Q ss_pred CChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCCch
Q 008940 122 GALQPVIGLLSSCC-SESQREAALLLGQFAATDSD 155 (548)
Q Consensus 122 g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~ 155 (548)
..+..+..+.+++. +.++.+++.++.-+......
T Consensus 958 t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p 992 (2067)
T KOG1822|consen 958 TSVSILLALATDSTSPVVQTWSLHALALILDSSGP 992 (2067)
T ss_pred cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCc
Confidence 34667777777766 58999999998888754333
No 373
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=35.85 E-value=97 Score=22.43 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=30.5
Q ss_pred HHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHH
Q 008940 472 YTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFD 511 (548)
Q Consensus 472 ~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~ 511 (548)
+|+ .++.+..+.++..|...+...|.+.|.++++..+.
T Consensus 7 ~F~--~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 7 EFL--DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp HHT---S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred HHH--HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 445 47888999999999999999999999999987654
No 374
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=35.50 E-value=27 Score=19.18 Aligned_cols=26 Identities=46% Similarity=0.539 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc
Q 008940 54 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 90 (548)
Q Consensus 54 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~ 90 (548)
||..|+++|+.+.. ++ .++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd--~~---------ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD--PR---------AIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S--HH---------HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--HH---------HHHHHHHHhc
Confidence 57888999998885 22 4566666553
No 375
>PHA03098 kelch-like protein; Provisional
Probab=35.24 E-value=88 Score=32.69 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=30.4
Q ss_pred cCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 008940 477 DISLENVSSMYELSEAFHAISLRHTCILYIMEH 509 (548)
Q Consensus 477 ~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 509 (548)
.++.+|+.+++..|..+..+.|++.|.+|+.++
T Consensus 72 ~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~ 104 (534)
T PHA03098 72 NITSNNVKDILSIANYLIIDFLINLCINYIIKI 104 (534)
T ss_pred EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 478899999999999999999999999999864
No 376
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=34.69 E-value=4.2e+02 Score=25.42 Aligned_cols=142 Identities=20% Similarity=0.110 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcC-----------CchHHHHhhc------cCCHHHHHHHHHHHHHhhccCc
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEG-----------GIPPLVELLE------FTDTKVQRAAAGALRTLAFKND 70 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g-----------~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~ 70 (548)
...++|-.|+.++.....+|++.+..+.+.- ....|.+.|- +.|+.-...|+.+|..+..+++
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-H
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCH
Confidence 3458889999999999999999998776541 1224555444 3456667789999999998888
Q ss_pred chhhHhhhc-------C-----ChHHHHHHhc-----cCChHHHHHHHHHHHHhhcCChhHHHHHHhc-CChHHHHHhhh
Q 008940 71 ENKNQIVEC-------N-----ALPTLILMLR-----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLS 132 (548)
Q Consensus 71 ~~~~~~~~~-------g-----~i~~Lv~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~ 132 (548)
+.++...+- | .++.+..+|- ..++.++..-+..|..-..+++..-..+... +.++.|+....
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~ 209 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSN 209 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhh
Confidence 887766543 1 1334444443 3356666666666666666667666666655 57888888753
Q ss_pred c-C--ChHHHHHHHHHHHHh
Q 008940 133 S-C--CSESQREAALLLGQF 149 (548)
Q Consensus 133 ~-~--~~~~~~~a~~~L~~l 149 (548)
. + +.-++-.++..|+-.
T Consensus 210 ~~~~~~~~VqGL~A~LLGic 229 (312)
T PF04869_consen 210 QSSSEDVLVQGLCAFLLGIC 229 (312)
T ss_dssp --TCCCHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHH
Confidence 3 2 233444444444443
No 377
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=34.53 E-value=50 Score=18.42 Aligned_cols=15 Identities=40% Similarity=0.189 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhc
Q 008940 53 KVQRAAAGALRTLAF 67 (548)
Q Consensus 53 ~v~~~a~~~L~~l~~ 67 (548)
.+|..|+.+|+++..
T Consensus 2 ~vR~~aa~aLg~~~~ 16 (30)
T smart00567 2 LVRHEAAFALGQLGD 16 (30)
T ss_pred HHHHHHHHHHHHcCC
Confidence 578899999999853
No 378
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=34.37 E-value=2.5e+02 Score=27.42 Aligned_cols=109 Identities=20% Similarity=0.210 Sum_probs=59.6
Q ss_pred ChHHHHHHhccC-------ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc----------CChHHHHHHH
Q 008940 81 ALPTLILMLRSE-------DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS----------CCSESQREAA 143 (548)
Q Consensus 81 ~i~~Lv~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----------~~~~~~~~a~ 143 (548)
.+|.++.++.+. +.......++.+..|..+ +.+.-...-.-.+|.++.++-. ....+|..|+
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N-~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA 289 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN-PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAA 289 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC-CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHH
Confidence 456666666432 456666677777777544 5443333333478888877632 2246888888
Q ss_pred HHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCC-H-HHHHHHHHHHHHh
Q 008940 144 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-V-QLREMSAFALGRL 191 (548)
Q Consensus 144 ~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~-~-~v~~~a~~~L~~l 191 (548)
..|..+|......-. -....++..+...+.++. + ....-|+..|..+
T Consensus 290 ~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 290 RLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 888888854322111 122234445555555432 2 2344555555544
No 379
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=34.23 E-value=5.5e+02 Score=26.62 Aligned_cols=138 Identities=19% Similarity=0.147 Sum_probs=77.4
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc--------CChHHHHHHHHHHHHhhcCChhH
Q 008940 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--------EDSAIHYEAVGVIGNLVHSSPNI 114 (548)
Q Consensus 43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~--------~~~~v~~~a~~~L~~l~~~~~~~ 114 (548)
+.+.+..+++..+..|+..|..=+. .. -.++.++.++.+ .|-.+....++.++.|. +|+.+
T Consensus 212 It~a~~g~~~~~r~eAL~sL~TDsG-----L~-----~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl-~Np~i 280 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLETDSG-----LQ-----QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL-DNPNI 280 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhccCcc-----HH-----HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh-cCCcc
Confidence 3344444555555555555532221 00 124555555542 34566667778888885 55666
Q ss_pred HHHHHhcCChHHHHHhhhcC----------ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCC--CHHHHH
Q 008940 115 KKEVLAAGALQPVIGLLSSC----------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLRE 182 (548)
Q Consensus 115 ~~~~~~~g~i~~L~~ll~~~----------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~--~~~v~~ 182 (548)
.-.-.-...+|.++.++-+. ...+|.-|+..+..+|......-.. ....+...+...+.+. ......
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhh
Confidence 54444456788888876432 2447777888888887554332222 3445667777777664 334455
Q ss_pred HHHHHHHHhh
Q 008940 183 MSAFALGRLA 192 (548)
Q Consensus 183 ~a~~~L~~l~ 192 (548)
-++..|..|.
T Consensus 360 Gai~gL~~lg 369 (576)
T KOG2549|consen 360 GAIAGLSELG 369 (576)
T ss_pred hHHHHHHHhh
Confidence 5555555553
No 380
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.09 E-value=1.2e+02 Score=33.50 Aligned_cols=96 Identities=16% Similarity=0.061 Sum_probs=66.5
Q ss_pred CCchHHHHhhccCCHHHHHHHHHHHHHhhc--cCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHH
Q 008940 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAF--KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 115 (548)
Q Consensus 38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 115 (548)
.++..-..+|.+++-.+|.+++.++....- ....+.-.-.-+-..+.++..+...++-+...|+.++.+++..+.+.-
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 345556678888899999999988874432 123333333334578899999999999999999999999987665543
Q ss_pred HHHHhcCChHHHHHhhhc
Q 008940 116 KEVLAAGALQPVIGLLSS 133 (548)
Q Consensus 116 ~~~~~~g~i~~L~~ll~~ 133 (548)
..-.-..++|.+-.++.+
T Consensus 883 ~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334577777766654
No 381
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=34.01 E-value=1.7e+02 Score=24.14 Aligned_cols=71 Identities=10% Similarity=0.111 Sum_probs=53.0
Q ss_pred CchHHHHhhc-cCCHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHH-HHHHhcc---CChHHHHHHHHHHHHhhc
Q 008940 39 GIPPLVELLE-FTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPT-LILMLRS---EDSAIHYEAVGVIGNLVH 109 (548)
Q Consensus 39 ~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~-Lv~ll~~---~~~~v~~~a~~~L~~l~~ 109 (548)
++..|.+-|+ +.++.++..|+..|-.+.... ......+...+++.. |++++.. .+..++..++.++...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 4556776666 468999999999999888743 455667777789987 8999863 345888888888877753
No 382
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=33.74 E-value=1.5e+02 Score=28.60 Aligned_cols=65 Identities=14% Similarity=0.245 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhccCcchhhHhhhcC--ChHHHHHHhccC---ChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940 53 KVQRAAAGALRTLAFKNDENKNQIVECN--ALPTLILMLRSE---DSAIHYEAVGVIGNLVHSSPNIKKEV 118 (548)
Q Consensus 53 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~Lv~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~ 118 (548)
.+|..|+..+..+.. ++.....+...+ ++..|++++.-+ ...++..|+.+|..++.......+.+
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 345555555555553 566677777766 899999999843 56899999999999988765554433
No 383
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=32.98 E-value=84 Score=23.32 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=41.9
Q ss_pred hcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhh----cCCChhHHHHHHHHHH
Q 008940 162 QRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL----DSKNGSLQHNAAFALY 230 (548)
Q Consensus 162 ~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll----~~~~~~v~~~a~~~L~ 230 (548)
+...+.++..++.+ .+.++|+..+.++.++...... -...| -+.++..+ .+++..+...|..++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~---~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE---NIKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH---HHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34567788888654 6889999999999999865432 23434 44444444 3455666666655543
No 384
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.67 E-value=7e+02 Score=27.33 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhh--hChhhHHHHHhcCCchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhh--cCChHHH
Q 008940 11 SVIRRAADAITNLAH--ENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTL 85 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L 85 (548)
-++++.+..+..... -..+.+. -.-..++.++++. |..++..+++++.-...+-.-+.+.+.. ++....+
T Consensus 502 iiRRRVa~ilg~Wvsvq~~~e~k~-----l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~l 576 (978)
T KOG1993|consen 502 IIRRRVAWILGQWVSVQQKLELKP-----LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLL 576 (978)
T ss_pred HHHHHHHHHHhhhhheechHhHHH-----HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHH
Confidence 457777777777763 1122222 2234677788876 6788899999999888642323333322 2334444
Q ss_pred HHHhcc-CChHHHHHHHHHHHHhhc
Q 008940 86 ILMLRS-EDSAIHYEAVGVIGNLVH 109 (548)
Q Consensus 86 v~ll~~-~~~~v~~~a~~~L~~l~~ 109 (548)
.+++.. +.-+.|...+.+|+.+..
T Consensus 577 fkll~~~~e~Dtk~~VL~~ls~lI~ 601 (978)
T KOG1993|consen 577 FKLLKAVEECDTKTSVLNLLSTLIE 601 (978)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 555552 344566667777766643
No 385
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=32.32 E-value=2.9e+02 Score=28.33 Aligned_cols=69 Identities=23% Similarity=0.212 Sum_probs=42.6
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHh--hcCChhHHHHHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhc
Q 008940 80 NALPTLILMLRSEDSAIHYEAVGVIGNL--VHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAA 151 (548)
Q Consensus 80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l--~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~ 151 (548)
++++.+++.+. .+.+...-++++. . .....+..+.+.+.+.|+.|+.+|.. .+++++..|+..|..+..
T Consensus 21 ~~v~~llkHI~--~~~ImDlLLklIs-~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~ 92 (475)
T PF04499_consen 21 NFVDNLLKHID--TPAIMDLLLKLIS-TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIR 92 (475)
T ss_pred cHHHHHHHhcC--CcHHHHHHHHHHc-cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 55666666654 2333333344433 1 01122455677778999999999974 447788888888877764
No 386
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=32.18 E-value=4.8e+02 Score=25.28 Aligned_cols=79 Identities=15% Similarity=0.041 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHH
Q 008940 134 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL 211 (548)
Q Consensus 134 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~ 211 (548)
.+++.....+.++..+..+.......-.....-+.++.++-+. .+.+|..|..++..+....+.. .....+..+.
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~---l~~~li~~l~ 250 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL---LSKSLISGLW 250 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH---HHHHHHHHHH
Confidence 3455556666777666644332111111223556788888777 7899999999999887655432 2223344444
Q ss_pred Hhhc
Q 008940 212 KLLD 215 (548)
Q Consensus 212 ~ll~ 215 (548)
..+.
T Consensus 251 ~~l~ 254 (339)
T PF12074_consen 251 KWLS 254 (339)
T ss_pred HHHH
Confidence 4444
No 387
>PHA02713 hypothetical protein; Provisional
Probab=31.98 E-value=65 Score=33.89 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=31.2
Q ss_pred hcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 008940 476 QDISLENVSSMYELSEAFHAISLRHTCILYIMEH 509 (548)
Q Consensus 476 ~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 509 (548)
..++.+|+..++..|..+..+.|.+.|.+|+.++
T Consensus 89 ~~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~ 122 (557)
T PHA02713 89 RHISSMNVIDVLKCADYLLIDDLVTDCESYIKDY 122 (557)
T ss_pred CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 3488999999999999999999999999999854
No 388
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=31.20 E-value=4.7e+02 Score=24.93 Aligned_cols=123 Identities=17% Similarity=0.193 Sum_probs=81.3
Q ss_pred hHhhhcCChHHHHHHhcc-----------------------CChHHHHHHHHHHHHhhcCChhHH---------------
Q 008940 74 NQIVECNALPTLILMLRS-----------------------EDSAIHYEAVGVIGNLVHSSPNIK--------------- 115 (548)
Q Consensus 74 ~~~~~~g~i~~Lv~ll~~-----------------------~~~~v~~~a~~~L~~l~~~~~~~~--------------- 115 (548)
..+.+.|.++.|-++... |+..++.+-++++.+++...+...
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 455666777777665531 122478888899998886332111
Q ss_pred ------HHHHhcCChHHHHHhhhcC--ChHHHHHHHHHHHHhhcCCch--hHHHHHhcCChHHHHHhhCCC---CHHHHH
Q 008940 116 ------KEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSD--CKVHIVQRGAVRPLIEMLQSP---DVQLRE 182 (548)
Q Consensus 116 ------~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~g~v~~L~~ll~~~---~~~v~~ 182 (548)
..-...|.+..+++.+... +...+-+.+.++-.+.++.+. -+..+.+.|.++.++..+-++ +..+.+
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 1111246677777777653 345666777788887777555 344678899999999887654 346888
Q ss_pred HHHHHHHHhhcCCc
Q 008940 183 MSAFALGRLAQDMH 196 (548)
Q Consensus 183 ~a~~~L~~l~~~~~ 196 (548)
...-.|+.|.+...
T Consensus 163 ~~FDLLGELiK~n~ 176 (303)
T PF12463_consen 163 SNFDLLGELIKFNR 176 (303)
T ss_pred HHHHHHHHHHCCCH
Confidence 88999999987764
No 389
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.76 E-value=7e+02 Score=26.74 Aligned_cols=242 Identities=17% Similarity=0.129 Sum_probs=119.7
Q ss_pred ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940 90 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRP 168 (548)
Q Consensus 90 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~ 168 (548)
.+.|+..|..|-..|..++ .++++ +....-++..++ +-....|..+|..+.++..... ...+..+-..
T Consensus 16 ~s~D~~~R~~AE~~L~e~s-~spec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lp-l~qrldir~Y 84 (1082)
T KOG1410|consen 16 ESTDPTARHRAEKALAELS-ESPEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLP-LEQRLDIRNY 84 (1082)
T ss_pred hcCCHHHHHHHHHHHHHHc-cCHHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHH
Confidence 4678889999999999996 44665 223333333333 3344556667777765433111 1111233445
Q ss_pred HHHhhCCCCHH----HHHHHHHHHHHhhcC---CcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC------
Q 008940 169 LIEMLQSPDVQ----LREMSAFALGRLAQD---MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN------ 235 (548)
Q Consensus 169 L~~ll~~~~~~----v~~~a~~~L~~l~~~---~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~------ 235 (548)
++..+..+.|. +....+..++.+.+- ...+....--..+..+.+.++.++.+-...++.+|..|..+
T Consensus 85 ilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN~~~~ 164 (1082)
T KOG1410|consen 85 ILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMNQADG 164 (1082)
T ss_pred HHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhhCCCC
Confidence 66666664443 334444444555422 23333333335677788888877766666666777766531
Q ss_pred --CcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhh--------hhhhhHHHHHHHHh-hhhh----hhhhHH
Q 008940 236 --EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI--------HGRVLNHLLYLMRV-AEKG----VQRRVA 300 (548)
Q Consensus 236 --~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~L~~ll~~-~~~~----~~~~a~ 300 (548)
+..+.+-+. ..|..+........++..+.... ..|.+..++++-.. -+-+ .--+..
T Consensus 165 ~~p~tkHRkia---------s~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEss 235 (1082)
T KOG1410|consen 165 MDPSTKHRKIA---------SSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESS 235 (1082)
T ss_pred CCcchHHHHHH---------hhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccccccc
Confidence 111111110 11111111111111221111111 11222222221110 0000 000011
Q ss_pred HHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 301 LALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 301 ~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
.-+++.-.+...|..+.+...+..+..+.++-.+..-..+..+|..+|+-.
T Consensus 236 ed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvR 286 (1082)
T KOG1410|consen 236 EDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVR 286 (1082)
T ss_pred ccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHH
Confidence 112222222335667888888999999999988888888888888888754
No 390
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.05 E-value=9.7e+02 Score=28.20 Aligned_cols=144 Identities=14% Similarity=0.073 Sum_probs=76.7
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhc-ccCCcchHH
Q 008940 163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVAD 241 (548)
Q Consensus 163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l-~~~~~~~~~ 241 (548)
.|++|.|-.-|.+++..+|..|...++.+......+-.-.........+.-+.+.+++++..++....+. ..++.....
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 4789999999999999999999999999987765443300111233355555677788888888776665 334443333
Q ss_pred HHHhcCcc-cccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhc
Q 008940 242 FIRVGGVQ-KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 306 (548)
Q Consensus 242 ~~~~g~i~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l 306 (548)
....-.+. ...+......+......-....+........+..+..-+.+....||..|..-|..+
T Consensus 338 ~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~Laql 403 (1266)
T KOG1525|consen 338 STILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQL 403 (1266)
T ss_pred HHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 32221111 111100000000000000000011111111344444455567889999998888766
No 391
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=29.63 E-value=6.1e+02 Score=25.76 Aligned_cols=207 Identities=18% Similarity=0.185 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHhhcCCch-hHHHHHhcCChH-HHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhH-hcCChHHHHH
Q 008940 136 SESQREAALLLGQFAATDSD-CKVHIVQRGAVR-PLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA-HNGGLVPLLK 212 (548)
Q Consensus 136 ~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~v~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~l~~L~~ 212 (548)
...|..++.+|+.+++.-+. .... ... .|+..|++....-|..++-++..-+........-. -....+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~-----~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQE-----IFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH-----HHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 34567788888888755322 1111 223 68888998887778888888888875544322111 1122344667
Q ss_pred hhcCCChhHHHHHHHHHHhccc-CCcchHHHHHhcCcc-----cc---cc-------cchhhhhhhHHHHHHHHHHHHhh
Q 008940 213 LLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQ-----KL---QD-------GEFIVQATKDCVAKTLKRLEEKI 276 (548)
Q Consensus 213 ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~-----~L---~~-------~~~~~~~~~~~~~~~~~~~~~~~ 276 (548)
.|..+.+.........+..+-. ...-...+.+.|.++ .| ++ ..|++...........+.+....
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l 255 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSL 255 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhc
Confidence 7775544444444444444422 222333444555522 22 11 23333332222222221111111
Q ss_pred h-------------h-hhhHHHHHHH----HhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhc-CCCCccc
Q 008940 277 H-------------G-RVLNHLLYLM----RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQ 337 (548)
Q Consensus 277 ~-------------~-~~~~~L~~ll----~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~ 337 (548)
. . .-+...+... ..-+..++..++.++..+-.-|+-- .-.|..|.+-++ ..+...|
T Consensus 256 ~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KL-----nPiIrpLMdSIK~Een~~LQ 330 (441)
T PF12054_consen 256 SPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKL-----NPIIRPLMDSIKREENELLQ 330 (441)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-----cHHHHHHHHHhhccccHHHH
Confidence 0 0 0111111111 1134455566666666664333211 123455555554 4667779
Q ss_pred hhhHHHHHHHhhhcc
Q 008940 338 LDGAVALFKLANKAT 352 (548)
Q Consensus 338 ~~a~~~L~~l~~~~~ 352 (548)
..++.+|..|.....
T Consensus 331 ~rsA~slA~Li~~~~ 345 (441)
T PF12054_consen 331 QRSAESLARLIQLCV 345 (441)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988655
No 392
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=28.94 E-value=4.7e+02 Score=24.15 Aligned_cols=110 Identities=20% Similarity=0.256 Sum_probs=65.8
Q ss_pred CCchHHHHhhccC-----------CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChH--------HHH
Q 008940 38 GGIPPLVELLEFT-----------DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA--------IHY 98 (548)
Q Consensus 38 g~i~~L~~ll~~~-----------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~--------v~~ 98 (548)
-.+|.|+++|... +......|+..|+.+- +....+.++++++.++.. +-+
T Consensus 31 ~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~r-----------e~~A~~~li~l~~~~~~~~~~l~GD~~tE 99 (249)
T PF06685_consen 31 EITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFR-----------EERALPPLIRLFSQDDDFLEDLFGDFITE 99 (249)
T ss_pred HhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHh-----------hhhhHHHHHHHHcCCcchHHHHHcchhHh
Confidence 4678888888641 1122334444444442 335788999999755432 122
Q ss_pred HHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC--hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHh
Q 008940 99 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 172 (548)
Q Consensus 99 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l 172 (548)
...+++..++ .|-++.+.+++.+++ .-++..|..+|..++..++..|..+++ .+..++..
T Consensus 100 ~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 100 DLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ--YFRELLNY 161 (249)
T ss_pred HHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHH
Confidence 2222232222 456778888888766 347788889999999887777776654 44444443
No 393
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=28.71 E-value=2.6e+02 Score=33.32 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=61.5
Q ss_pred hhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHh-cCCh
Q 008940 46 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGAL 124 (548)
Q Consensus 46 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i 124 (548)
++.+.++.++..+......+-..-+ ...+..++..|+..+.+++..-...|+.+|..|+..++.. +.. ...+
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fd----s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~---l~~fa~~l 515 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFD----SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSE---LQPFATFL 515 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHH---HHHTHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHH---HHHHHHHH
Confidence 4456778888888777776655321 2333447888999888777766789999999998654442 222 2345
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhhcC
Q 008940 125 QPVIGLLSSCCSESQREAALLLGQFAAT 152 (548)
Q Consensus 125 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 152 (548)
..+++.+.+-+..-.+..-..|+.++..
T Consensus 516 ~giLD~l~~Ls~~qiR~lf~il~~La~~ 543 (1426)
T PF14631_consen 516 KGILDYLDNLSLQQIRKLFDILCTLAFS 543 (1426)
T ss_dssp HGGGGGGGG--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 5566666665555555666777777643
No 394
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=28.33 E-value=7.9e+02 Score=26.63 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhc
Q 008940 135 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 193 (548)
Q Consensus 135 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 193 (548)
.+..|..++..|+.+....+.-...+.+..+++.|+.+|.. .+..+...|+.+|..|--
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 35677888889999998888888888999999999999986 466677788888877763
No 395
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=28.20 E-value=5.8e+02 Score=26.85 Aligned_cols=132 Identities=11% Similarity=0.018 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhh--cCChHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLI 86 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~Lv 86 (548)
.+.++..+...|+.-+..-|+ .+..-.++...-.+|.+.+..+|.....++..++..++... .+.. .-.-..++
T Consensus 288 ~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d-~ir~f~eRFk~rIL 363 (740)
T COG5537 288 DDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTD-AIRRFVERFKDRIL 363 (740)
T ss_pred hHHHHHHHHHHHHHHHhcchH---HHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHH
Confidence 455666666666666643333 34444466777777888889999999999999998655433 2222 12444566
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhh
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 150 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 150 (548)
+++..+..-+|..+...+..+..- ...+...+-.+..++-+..++-+......+.++|
T Consensus 364 E~~r~D~d~VRi~sik~l~~lr~l------g~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~ic 421 (740)
T COG5537 364 EFLRTDSDCVRICSIKSLCYLRIL------GVLSSSEILIVSSCMLDIIPDSRENIVESVESIC 421 (740)
T ss_pred HHHhhccchhhHHHHHHHHHHHHh------cccchhHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 776644334888888877766321 1112233555666666666664444445555555
No 396
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=28.12 E-value=59 Score=20.23 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=19.8
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHH
Q 008940 163 RGAVRPLIEMLQSPDVQLREMSAFA 187 (548)
Q Consensus 163 ~g~v~~L~~ll~~~~~~v~~~a~~~ 187 (548)
..+.+.+...+.++++.+|+.|...
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3466778888889999999988765
No 397
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=28.09 E-value=2.9e+02 Score=21.55 Aligned_cols=69 Identities=7% Similarity=0.089 Sum_probs=48.4
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHHhc------cCChHHHHHHHHHHHHh
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLR------SEDSAIHYEAVGVIGNL 107 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~ll~------~~~~~v~~~a~~~L~~l 107 (548)
++..|.+-|++.++.++..|+..|-.+... ++.....+.....+..++.+.. +.+..+|..+..++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 455677778888999999999999999974 3455566666655555554311 23667888888777654
No 398
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=27.45 E-value=5.5e+02 Score=24.50 Aligned_cols=125 Identities=18% Similarity=0.221 Sum_probs=82.0
Q ss_pred HHHHhcCCchHHHHhhcc-----------------------CCHHHHHHHHHHHHHhhccCcchh---------------
Q 008940 32 TRVRMEGGIPPLVELLEF-----------------------TDTKVQRAAAGALRTLAFKNDENK--------------- 73 (548)
Q Consensus 32 ~~i~~~g~i~~L~~ll~~-----------------------~~~~v~~~a~~~L~~l~~~~~~~~--------------- 73 (548)
..+.+.|.||.|-.+.+. ++..++..-++.+..++.++..+.
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 346667787777776641 112477788889999887432111
Q ss_pred ------hHhhhcCChHHHHHHhcc--CChHHHHHHHHHHHHhhcCChh--HHHHHHhcCChHHHHHhhhcCC---hHHHH
Q 008940 74 ------NQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPN--IKKEVLAAGALQPVIGLLSSCC---SESQR 140 (548)
Q Consensus 74 ------~~~~~~g~i~~Lv~ll~~--~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~ll~~~~---~~~~~ 140 (548)
..-.+.|.+..+++.+.. .+...+-.-+.++-....+.+. -+..+.+.|.++.++..+-++. .++.+
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 111234667777776653 3567788888888888777655 3456778899999998876543 34667
Q ss_pred HHHHHHHHhhcCCchh
Q 008940 141 EAALLLGQFAATDSDC 156 (548)
Q Consensus 141 ~a~~~L~~l~~~~~~~ 156 (548)
..--.|+.|...+...
T Consensus 163 ~~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 163 SNFDLLGELIKFNRDA 178 (303)
T ss_pred HHHHHHHHHHCCCHHH
Confidence 7777888887665443
No 399
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=26.75 E-value=97 Score=24.52 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=31.4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhH
Q 008940 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA 202 (548)
Q Consensus 165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 202 (548)
+++.|+..|.+++++|...|..+|...|........++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 67889999999999999999999999998774444443
No 400
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=26.75 E-value=5.1e+02 Score=31.68 Aligned_cols=170 Identities=12% Similarity=0.091 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh----ccCChHHHHHHHHHHHHhhcCChhHHH---HHHhcCChHHH
Q 008940 55 QRAAAGALRTLAFKNDENKNQIVECNALPTLILML----RSEDSAIHYEAVGVIGNLVHSSPNIKK---EVLAAGALQPV 127 (548)
Q Consensus 55 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~~g~i~~L 127 (548)
|..++.-|..++..|. .|-.+....+...+.+.+ .+++..+...|+..|+.++...-+..+ .-.+...+.++
T Consensus 1109 r~FsLqKLveIa~~Nm-~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNM-NRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred chhHHHHHHHHHHhcc-cchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 4556666666665443 344554555444444433 345778889999999998864332211 12234567777
Q ss_pred HHhhhc-CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC----CCCHHHHHHHHHHHHHhhcCCcc-----
Q 008940 128 IGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----SPDVQLREMSAFALGRLAQDMHN----- 197 (548)
Q Consensus 128 ~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~----- 197 (548)
..++.+ .+.++++..+.++.++..... .-++. +.+.+..++. ++++.+...|..++..+..+.-.
T Consensus 1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~ 1262 (1780)
T PLN03076 1188 VIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITET 1262 (1780)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 777764 457899999999998864322 22333 4455555554 45678888888888877643211
Q ss_pred -hhhhHhcCChHHHHHhhcCC-ChhHHHHHHHHHHhc
Q 008940 198 -QAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGL 232 (548)
Q Consensus 198 -~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l 232 (548)
...+. ..+..+..+.... +.++-..|+..|+++
T Consensus 1263 ~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1263 ETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred chhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 11111 2344444454433 466666777777755
No 401
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.69 E-value=2.5e+02 Score=28.62 Aligned_cols=126 Identities=14% Similarity=0.075 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHH
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILM 88 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~l 88 (548)
|+++...+.+|.-|- |+..+.....+..+..++..++...|..+..-+...... |...+..-.....-..+..+
T Consensus 34 ~~Lr~~i~~~LiLLr-----Nk~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~klnkslq~~~fsm 108 (616)
T KOG2229|consen 34 PELREKIVKALILLR-----NKNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKNDKLNKSLQAFMFSM 108 (616)
T ss_pred HHHHHHHHHHHHHHh-----ccCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 577788888887776 333444456677788888888877765554333222220 11111111111122345678
Q ss_pred hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHH
Q 008940 89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 145 (548)
Q Consensus 89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~ 145 (548)
|..+++.--.+|+.+++.|-.. ....+...+..+....-+.++.+...++..
T Consensus 109 l~~~d~~~ak~a~~~~~eL~kr-----~iW~d~~tV~i~~~acf~~~~ki~vs~l~F 160 (616)
T KOG2229|consen 109 LDQSDSTAAKMALDTMIELYKR-----NIWNDSKTVNIITTACFSKVPKILVSGLRF 160 (616)
T ss_pred HhCCCchhHHHHHHHHHHHHHh-----cccccchhHHHHHHHHhccCcHHHHhhhHH
Confidence 8888888777888888777432 122233444444444445555555544443
No 402
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.67 E-value=8.6e+02 Score=26.80 Aligned_cols=150 Identities=14% Similarity=0.113 Sum_probs=73.4
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccCcc-hhhHhhhcCChHHHH-------HHhccC----ChHHHHHHHHHHHH
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLI-------LMLRSE----DSAIHYEAVGVIGN 106 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~Lv-------~ll~~~----~~~v~~~a~~~L~~ 106 (548)
.+|.+++.|+.+..-+-..|+.++..+-.-.+. +...+....+.+.+. +.+..+ ++-+.+...+.+.-
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i 578 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISI 578 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHh
Confidence 578889999999999999999999887653233 233333333333222 222222 33344444444433
Q ss_pred hhcCChhHHHHHHhcCChHHHHHhh----hcCC-hH----HHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCC
Q 008940 107 LVHSSPNIKKEVLAAGALQPVIGLL----SSCC-SE----SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD 177 (548)
Q Consensus 107 l~~~~~~~~~~~~~~g~i~~L~~ll----~~~~-~~----~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~ 177 (548)
+ ++..... ..-.++.|.+.+ ++++ |. ..+..+..+...|..++.... ..+...+|.+...++.+-
T Consensus 579 ~----~~~i~p~-~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs-~~e~aL~p~fq~Il~eDI 652 (960)
T KOG1992|consen 579 L----QSAIIPH-APELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVS-SLEEALFPVFQTILSEDI 652 (960)
T ss_pred C----HHhhhhh-hhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHH-HHHHHHHHHHHHHHHHHH
Confidence 2 2110000 011233333333 2222 32 223334444444444333322 233456777777777665
Q ss_pred HHHHHHHHHHHHHhhcC
Q 008940 178 VQLREMSAFALGRLAQD 194 (548)
Q Consensus 178 ~~v~~~a~~~L~~l~~~ 194 (548)
.+..-.+...++-+...
T Consensus 653 ~EfiPYvfQlla~lve~ 669 (960)
T KOG1992|consen 653 QEFIPYVFQLLAVLVEH 669 (960)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55555555556555533
No 403
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=26.43 E-value=1.3e+02 Score=25.64 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=53.2
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHH-hhcCCC--hhHHHHHHHHHHhcccC
Q 008940 159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK-LLDSKN--GSLQHNAAFALYGLADN 235 (548)
Q Consensus 159 ~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-ll~~~~--~~v~~~a~~~L~~l~~~ 235 (548)
.+++..+.+.++..+.++++.+-..+++++..+...-...-+.--+-.+..+.. ++.+++ ...+..++.++..++.+
T Consensus 68 ~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 345556777788888777788889999999998844322111111112334333 666544 35677889999999988
Q ss_pred CcchHHH
Q 008940 236 EDNVADF 242 (548)
Q Consensus 236 ~~~~~~~ 242 (548)
+.....+
T Consensus 148 p~~l~~l 154 (168)
T PF12783_consen 148 PQFLVDL 154 (168)
T ss_pred hhHHHHH
Confidence 7654433
No 404
>PRK09169 hypothetical protein; Validated
Probab=26.19 E-value=1.4e+03 Score=28.79 Aligned_cols=12 Identities=25% Similarity=0.155 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 008940 52 TKVQRAAAGALR 63 (548)
Q Consensus 52 ~~v~~~a~~~L~ 63 (548)
++-...++++|.
T Consensus 456 ~QeLaN~LnALs 467 (2316)
T PRK09169 456 AQELANALNALS 467 (2316)
T ss_pred HHHHHHHHHHHh
Confidence 333334444444
No 405
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=26.18 E-value=1.5e+02 Score=22.30 Aligned_cols=57 Identities=19% Similarity=0.147 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC--ChHHHHHHHHHHHHh
Q 008940 50 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNL 107 (548)
Q Consensus 50 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~--~~~v~~~a~~~L~~l 107 (548)
+...+|..|+..|..++.. -.....-.+.-++..+.+.+.++ +.....-|+..|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~-~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRK-FSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999973 22222222334677777777755 345666677777777
No 406
>PHA02790 Kelch-like protein; Provisional
Probab=25.77 E-value=1.3e+02 Score=31.06 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=29.8
Q ss_pred ccchHhHHHHHHHHHHhChHhHHHHHHHHHHhc
Q 008940 445 DVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQD 477 (548)
Q Consensus 445 ~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~ 477 (548)
.++++|..+++.+|+.|++++|.+.+.+|+.++
T Consensus 119 ~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~n 151 (480)
T PHA02790 119 DFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKH 151 (480)
T ss_pred hCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 578899999999999999999999998888764
No 407
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=25.61 E-value=1.2e+03 Score=27.64 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhhC--h----hhHHHHHhcCCchHHHHhhccC-----C---HHHHHHHHHHHHHhhccCcchhhHhh
Q 008940 12 VIRRAADAITNLAHEN--S----SIKTRVRMEGGIPPLVELLEFT-----D---TKVQRAAAGALRTLAFKNDENKNQIV 77 (548)
Q Consensus 12 ~~~~a~~~L~~l~~~~--~----~~~~~i~~~g~i~~L~~ll~~~-----~---~~v~~~a~~~L~~l~~~~~~~~~~~~ 77 (548)
+.+..+--|..+|... + ..+..+..-|+-...+++|+-+ | .++...|-..|.+.|.+|++|+..+.
T Consensus 1203 ~vkeiLiRl~k~Cv~~~~~k~rk~~QrLLkNmg~h~VvLdllqiPydkk~D~~M~elm~laHeFLqnFC~gN~qNQ~lLh 1282 (2706)
T KOG3533|consen 1203 LVKEILIRLTKMCVRKGDPKPRKMNQRLLKNMGVHEVVLELLQIPYDKKHDHKMMELMTLAHEFLQNFCKGNKQNQSLLH 1282 (2706)
T ss_pred HHHHHHHHHHHHHhhCCCCCccHHHHHHHHhcchHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 4455666677777432 2 3355667778888999999743 2 45778888999999999999887654
Q ss_pred h
Q 008940 78 E 78 (548)
Q Consensus 78 ~ 78 (548)
+
T Consensus 1283 k 1283 (2706)
T KOG3533|consen 1283 K 1283 (2706)
T ss_pred H
Confidence 4
No 408
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=24.89 E-value=5.2e+02 Score=23.40 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCC--------------HH----HHHHHHHHHHHhhccCc
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--------------TK----VQRAAAGALRTLAFKND 70 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--------------~~----v~~~a~~~L~~l~~~~~ 70 (548)
++....-+|..+..|... ++....+.+.+.++.+.+.|..-+ .. +-..=...|+.++. ++
T Consensus 77 ~~~y~~vGc~L~~~Ll~~-~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~-~~ 154 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSS-PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS-TP 154 (226)
T ss_pred chHHHHHHHHHHHHHHcC-cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC-Ch
Confidence 356667788888888854 554444568899999988886431 11 22233467788886 67
Q ss_pred chhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhh
Q 008940 71 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 150 (548)
Q Consensus 71 ~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 150 (548)
...+.+-+.|+...+..+....+. .....-++.++-...+...+ ..|-+.|.+++..+|..|..-|..+.
T Consensus 155 ~Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R--------~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 155 NGLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPR--------IILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred hHHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHH--------HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 778888888999999998875422 22222255555222121111 24556788888899999988887764
No 409
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=24.14 E-value=2.9e+02 Score=22.82 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=52.5
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcc--hhhhHhcCChHH-HHHhhcC---CChhHHHHHHHHHHhccc
Q 008940 165 AVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVP-LLKLLDS---KNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 165 ~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~-L~~ll~~---~~~~v~~~a~~~L~~l~~ 234 (548)
++..|...+.+ .++.++..|+..|-.+..+... +..+...+++.. |..++.. .+..|+..++..+...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 56667777764 5888999999999999887754 456667788887 8888863 235788888888877653
No 410
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=24.09 E-value=1.6e+02 Score=22.10 Aligned_cols=58 Identities=19% Similarity=0.125 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC--ChhHHHHHHHHHHhcc
Q 008940 176 PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLA 233 (548)
Q Consensus 176 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~ 233 (548)
++..+|+.|+..|..++........-.+......+.+.+.++ +.....-|+..|..+.
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 466899999999999996544333333334556677666654 3456667777777773
No 411
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=23.81 E-value=1.2e+02 Score=28.75 Aligned_cols=55 Identities=27% Similarity=0.294 Sum_probs=40.8
Q ss_pred hcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCc--------------chhhHhhhcCChHHHHHHhc
Q 008940 36 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND--------------ENKNQIVECNALPTLILMLR 90 (548)
Q Consensus 36 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--------------~~~~~~~~~g~i~~Lv~ll~ 90 (548)
+...+..+++-|.+++...|..|+++|..++.|.- .|...+.+.|+++.++.+|+
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34566788899999999999999999999997632 22334556677777777765
No 412
>PRK09169 hypothetical protein; Validated
Probab=23.79 E-value=1.5e+03 Score=28.46 Aligned_cols=15 Identities=13% Similarity=0.167 Sum_probs=6.7
Q ss_pred ChHHHHHHHHHHHHh
Q 008940 135 CSESQREAALLLGQF 149 (548)
Q Consensus 135 ~~~~~~~a~~~L~~l 149 (548)
++.-..+++++|+..
T Consensus 329 ~aQ~vAN~LNALSKW 343 (2316)
T PRK09169 329 NAQAVANALNALSKW 343 (2316)
T ss_pred CHHHHHHHHHHHhcC
Confidence 344444444444443
No 413
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.78 E-value=5.1e+02 Score=25.63 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=72.8
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 160 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 160 (548)
-+..|+.-+++.+..+|..|..-|..+-...+.... ....-+++.+..+..+.+..+|.....++..+...........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 466778888899999999999999888655444322 1223467777777778888888888777777653322221111
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940 161 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 195 (548)
Q Consensus 161 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 195 (548)
.-.=.++.+...|.+-.++++..++..|.-+....
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 11112334444455667888888888888776443
No 414
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=23.54 E-value=2.9e+02 Score=32.86 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=62.1
Q ss_pred CChHHHHH----HhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCch
Q 008940 80 NALPTLIL----MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 155 (548)
Q Consensus 80 g~i~~Lv~----ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 155 (548)
+..+.++. +++++++.++..+......+....+. ..+..++..|+..+-+++..-...|..+|..|+..++.
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS 506 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH
Confidence 34555554 45678889999988888888665433 12223667888887666655557888999999865443
Q ss_pred hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940 156 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 156 ~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 194 (548)
..... ...+..+++.+..=+..-.......|+.++..
T Consensus 507 ~l~~f--a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~ 543 (1426)
T PF14631_consen 507 ELQPF--ATFLKGILDYLDNLSLQQIRKLFDILCTLAFS 543 (1426)
T ss_dssp HHHHT--HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 22211 22444455555543332233346667777643
No 415
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=23.50 E-value=2.7e+02 Score=27.00 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhChhhHHHHHhcC--CchHHHHhhccCC---HHHHHHHHHHHHHhhccCcch
Q 008940 16 AADAITNLAHENSSIKTRVRMEG--GIPPLVELLEFTD---TKVQRAAAGALRTLAFKNDEN 72 (548)
Q Consensus 16 a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~ 72 (548)
|..++.... .++.....+...+ .+..|+++++.++ ..+|..|+.+|..++......
T Consensus 242 Ai~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~ 302 (329)
T PF06012_consen 242 AIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRC 302 (329)
T ss_pred HHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccH
Confidence 333333333 4556666677676 8899999998654 789999999999999744333
No 416
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=22.71 E-value=7.1e+02 Score=30.57 Aligned_cols=133 Identities=10% Similarity=0.134 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHHHhhhC---hhhHHHHHhcCCchHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHH
Q 008940 9 VNSVIRRAADAITNLAHEN---SSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 84 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~---~~~~~~i~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 84 (548)
+..+...|+..|..++..- ++....-.....+.++..+++ +.+.++++..++++.++...... .+ +. |.+.
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~---nI-kS-GWkt 1224 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN---NV-KS-GWKS 1224 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh---hh-hc-CcHH
Confidence 3567778888888887421 221111122345677777665 45689999999999999863222 22 22 5666
Q ss_pred HHHHhc----cCChHHHHHHHHHHHHhhcCChhHHHHHHh--cC----ChHHHHHhhhcC-ChHHHHHHHHHHHHh
Q 008940 85 LILMLR----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AG----ALQPVIGLLSSC-CSESQREAALLLGQF 149 (548)
Q Consensus 85 Lv~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g----~i~~L~~ll~~~-~~~~~~~a~~~L~~l 149 (548)
++.++. +.++.+...|..++..+..+.-. .+.. .+ .|..+..+.... +.++.-.|+..|+++
T Consensus 1225 IF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~---~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1225 MFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFP---YITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhh---hccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 666665 56788888899888877643211 1110 12 333344443322 355666666666655
No 417
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=22.38 E-value=2.1e+02 Score=28.03 Aligned_cols=71 Identities=7% Similarity=0.078 Sum_probs=54.5
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc--hhhhHhcCChHHHHHhhc-CCChhHHHHHHHHHHhccc
Q 008940 164 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 164 g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 234 (548)
.++..++..|...++.|...|+..+..++.++.. +..+....+...|..++. +.++.|++.....+.+.+.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999999877655 344445456667888888 5677787776666666654
No 418
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.37 E-value=1.3e+03 Score=27.24 Aligned_cols=159 Identities=12% Similarity=0.066 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc----c---CChHHHHHHHHHHHHhhcCChhHHHHHHhcC
Q 008940 50 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----S---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 122 (548)
Q Consensus 50 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~----~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 122 (548)
+..+++...+.++.++... +...-. +| -+.+.+.++ . ....+.+.+..+|.-++.+.-.--..-.-.+
T Consensus 854 ~~~evr~~sl~~l~silet-~ge~ll---~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILET-VGEHLL---HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred ccceeeHHHHHHHHHHHhc-cchhhc---cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 3466777777777777652 211111 11 333333332 1 2445666667777766654211000001123
Q ss_pred ChHHHHHhhh-cCChHHHHHHHHHHHHhhcCCchh-HHHHHhcCChHHHHHhhCC--CCHHHHHHHH-----HHHHHhhc
Q 008940 123 ALQPVIGLLS-SCCSESQREAALLLGQFAATDSDC-KVHIVQRGAVRPLIEMLQS--PDVQLREMSA-----FALGRLAQ 193 (548)
Q Consensus 123 ~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~g~v~~L~~ll~~--~~~~v~~~a~-----~~L~~l~~ 193 (548)
.|..++.+-. ..+-.+.-.|...+|++... -.. +....+.+.-...++-+.+ +...+...++ ..|.++|.
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsDf-l~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDF-LKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHH-HHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhc
Confidence 4555555443 24455667777777777522 111 1111222222222222222 1222222232 33344443
Q ss_pred CCcchhhhHhcCChHHHHHhhcCC
Q 008940 194 DMHNQAGIAHNGGLVPLLKLLDSK 217 (548)
Q Consensus 194 ~~~~~~~~~~~~~l~~L~~ll~~~ 217 (548)
+ -+.-++.|+++.+++.+.+.
T Consensus 1008 d---sr~eVRngAvqtlfri~~Sh 1028 (1610)
T KOG1848|consen 1008 D---SRAEVRNGAVQTLFRIFNSH 1028 (1610)
T ss_pred c---chHHHhhhHHHHHHHHHhhh
Confidence 3 23445668888888887654
No 419
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=22.22 E-value=46 Score=31.57 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=39.7
Q ss_pred hhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc---------------cceeeecCCchHHHHHhhc
Q 008940 277 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD---------------QRTIFIDGGGLELLLGLLG 330 (548)
Q Consensus 277 ~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~---------------~~~~~~~~~~i~~L~~ll~ 330 (548)
+...+..++.-|.+.+...|..|+++|..++.+.- +...+.+.|+++.|..+|.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44578888999999999999999999999987631 2235555666666666654
No 420
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=21.97 E-value=7.7e+02 Score=24.31 Aligned_cols=133 Identities=11% Similarity=0.074 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHHhhccCcchhhHhhhcC---ChHHHHHHhccC--ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChH
Q 008940 51 DTKVQRAAAGALRTLAFKNDENKNQIVECN---ALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 125 (548)
Q Consensus 51 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g---~i~~Lv~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 125 (548)
+.++...|+++|+.+.. +++....+-..- ++...+..+.++ +..+....+++|..=--. ..++....+.
T Consensus 59 ~~~L~~qALkll~~~l~-~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~ 132 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLY-HPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVE 132 (372)
T ss_pred chHHHHHHHHHHHHHHc-cHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHH
Confidence 56788899999999986 566655554432 344445555433 445666666666432111 1133333444
Q ss_pred HHHHhhhc-----CChHHHHHHHHHHHHhhcCCchhHHHHHh-c-CChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940 126 PVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQ-R-GAVRPLIEMLQSPDVQLREMSAFALGRLA 192 (548)
Q Consensus 126 ~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~-g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 192 (548)
.++..+.. ++..+......++.++....+.. +.+ . -.++.++..+-+....++..|...+..+.
T Consensus 133 ~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~---M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 133 RLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQ---MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 55554432 34567788888888988554332 322 2 36777777777777778877666665554
No 421
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=21.81 E-value=6.1e+02 Score=27.08 Aligned_cols=87 Identities=20% Similarity=0.231 Sum_probs=62.4
Q ss_pred HHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCH
Q 008940 99 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 178 (548)
Q Consensus 99 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~ 178 (548)
.|+--++-++.+ +.+...-.+..+-.++.-.++.+|+..-.+++-++..+|.. .+++.|-....+.+.
T Consensus 622 ~avLgiAliAMg-----eeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~ 689 (878)
T KOG2005|consen 622 LAVLGIALIAMG-----EEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDL 689 (878)
T ss_pred chhhhhhhhhhh-----hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcch
Confidence 444444555544 22222335667777888888999999989999998766643 467888888888999
Q ss_pred HHHHHHHHHHHHhhcCCcc
Q 008940 179 QLREMSAFALGRLAQDMHN 197 (548)
Q Consensus 179 ~v~~~a~~~L~~l~~~~~~ 197 (548)
++..++..+++-+.....+
T Consensus 690 eva~naIfamGLiGAGTnN 708 (878)
T KOG2005|consen 690 EVAMNAIFAMGLIGAGTNN 708 (878)
T ss_pred HHHHHHHHHhccccCCcch
Confidence 9999999998887655444
No 422
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.74 E-value=1.3e+03 Score=26.43 Aligned_cols=249 Identities=8% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CCcchhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc----cCCHHHHHHHHHHHHHhhccCcchhhHhh
Q 008940 2 DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDENKNQIV 77 (548)
Q Consensus 2 ~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 77 (548)
..+.+..--..+..-+..+..+. ..-.....+.+...+..++.+|. ++-..+|.-|.-+..++-..
T Consensus 161 l~~~g~~~k~fr~~~~~fl~~lV-~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~--------- 230 (1048)
T KOG2011|consen 161 LTSKGPEWKNFRENFCEFLPTLV-SQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTA--------- 230 (1048)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH-HHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH---------
Q ss_pred hcCChHHHHHHhccCChHHHH---------------HHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHH
Q 008940 78 ECNALPTLILMLRSEDSAIHY---------------EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 142 (548)
Q Consensus 78 ~~g~i~~Lv~ll~~~~~~v~~---------------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a 142 (548)
.+...+.+..+.+..-+. ..+...+.......+--+.|++.-.=..++.-..+-.+++|..+
T Consensus 231 ---Lv~va~~Ls~~~~~tskQleaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiC 307 (1048)
T KOG2011|consen 231 ---LVSVALNLSSHNDKTSKQLEAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAIC 307 (1048)
T ss_pred ---HHHHHHHHHHhhHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHH
Q ss_pred HHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc--hhhhHhcCChHHHHHhh-cCCCh
Q 008940 143 ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLL-DSKNG 219 (548)
Q Consensus 143 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll-~~~~~ 219 (548)
+..|+.-+ ..+...+.+...+..+--.|.+.+.+||..++.+|-.|-..... .-...-...=..++++. .+.+.
T Consensus 308 iqeLgiWi---~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~ 384 (1048)
T KOG2011|consen 308 IQELGIWI---KSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNV 384 (1048)
T ss_pred HHHHHHHH---HhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcch
Q ss_pred hHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhH
Q 008940 220 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRV 299 (548)
Q Consensus 220 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a 299 (548)
.|+...+..+....... ..+..-+..+..++-+.++.++.+|
T Consensus 385 ~Vrav~L~~~~~~~~~g--------------------------------------~L~d~di~~Vy~Li~d~~r~~~~aa 426 (1048)
T KOG2011|consen 385 SVRAVGLVLCLLLSSSG--------------------------------------LLSDKDILIVYSLIYDSNRRVAVAA 426 (1048)
T ss_pred hHHHHHHHHHHHHhccc--------------------------------------ccChhHHHHHHHHHhccCcchHHHH
Q ss_pred HHHhh
Q 008940 300 ALALA 304 (548)
Q Consensus 300 ~~aL~ 304 (548)
...+.
T Consensus 427 ~~fl~ 431 (1048)
T KOG2011|consen 427 GEFLY 431 (1048)
T ss_pred HHHHH
No 423
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=20.42 E-value=9.1e+02 Score=25.51 Aligned_cols=134 Identities=11% Similarity=-0.015 Sum_probs=79.9
Q ss_pred cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh--cCChHH
Q 008940 91 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRP 168 (548)
Q Consensus 91 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~v~~ 168 (548)
+-++.+|..+...|+--...-|+ .+....++...-+.|.+.+..++.....++..|++..+... .+.+ ......
T Consensus 286 Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d-~ir~f~eRFk~r 361 (740)
T COG5537 286 DVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTD-AIRRFVERFKDR 361 (740)
T ss_pred chhHHHHHHHHHHHHHHHhcchH---HHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHH
Confidence 44566777766666555444343 33344477788888889999999999999999998866443 1211 234555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940 169 LIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 233 (548)
Q Consensus 169 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 233 (548)
+++.+..+..-||..+...+..+..-. ..+...+..+..++-+..++-+......+.++|
T Consensus 362 ILE~~r~D~d~VRi~sik~l~~lr~lg-----~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~ic 421 (740)
T COG5537 362 ILEFLRTDSDCVRICSIKSLCYLRILG-----VLSSSEILIVSSCMLDIIPDSRENIVESVESIC 421 (740)
T ss_pred HHHHHhhccchhhHHHHHHHHHHHHhc-----ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 666666554448888887777764221 112223444555565555553333333444443
No 424
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=20.14 E-value=1.1e+02 Score=30.08 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=29.1
Q ss_pred ccchHhHHHHHHHHHHhChHhHHHHHHHHHHh
Q 008940 445 DVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQ 476 (548)
Q Consensus 445 ~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~ 476 (548)
.++++++...++++.+|+++.+++.|.+.+..
T Consensus 169 ~lspkta~~yYea~ckYgle~vk~kc~ewl~~ 200 (488)
T KOG4682|consen 169 TLSPKTACGYYEAACKYGLESVKKKCLEWLLN 200 (488)
T ss_pred hcChhhhhHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 37899999999999999999999999988764
No 425
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=20.13 E-value=1.4e+02 Score=22.29 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=21.0
Q ss_pred HHHHHHHHhChHhHHHHHHHHHHhc
Q 008940 453 DLLRAADQYLLEGLKRLCEYTIAQD 477 (548)
Q Consensus 453 ~ll~~a~~~~~~~l~~~c~~~l~~~ 477 (548)
+++.+|+.|+.+.|.+.|..++.++
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHH
Confidence 5677899999999999998887654
No 426
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.10 E-value=6.3e+02 Score=25.97 Aligned_cols=133 Identities=18% Similarity=0.111 Sum_probs=71.0
Q ss_pred hHHHHhhccC----CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHH----HHHHHhhcCCh
Q 008940 41 PPLVELLEFT----DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAV----GVIGNLVHSSP 112 (548)
Q Consensus 41 ~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~----~~L~~l~~~~~ 112 (548)
..|..+|... ++.++...+.+|.-|- |+..+.-...++.+++++..++...|..+. ..+.|+-..
T Consensus 19 ~el~dLL~~~~~~lp~~Lr~~i~~~LiLLr-----Nk~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~-- 91 (616)
T KOG2229|consen 19 SELKDLLRTNHTVLPPELREKIVKALILLR-----NKNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKK-- 91 (616)
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHh-----ccCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhh--
Confidence 3566677543 5888888888887665 344455556788889999988877766543 333333111
Q ss_pred hHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHH
Q 008940 113 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAF 186 (548)
Q Consensus 113 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~ 186 (548)
.+..-.....-..+..+|..+++.-..+|+.++..|-.. ....+...+.......-+.++.+...++.
T Consensus 92 -~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr-----~iW~d~~tV~i~~~acf~~~~ki~vs~l~ 159 (616)
T KOG2229|consen 92 -HKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKR-----NIWNDSKTVNIITTACFSKVPKILVSGLR 159 (616)
T ss_pred -cccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-----cccccchhHHHHHHHHhccCcHHHHhhhH
Confidence 111111122334566777777775444444444444211 11223344444444444455555544433
Done!