Query 008940
Match_columns 548
No_of_seqs 486 out of 3157
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 15:11:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 6.3E-33 2.2E-37 284.6 26.7 342 8-350 69-431 (510)
2 3nmz_A APC variant protein; pr 100.0 1.1E-33 3.6E-38 280.5 16.7 309 9-351 95-452 (458)
3 1xm9_A Plakophilin 1; armadill 100.0 1.7E-32 5.8E-37 277.0 22.0 308 7-351 13-451 (457)
4 3tpo_A Importin subunit alpha- 100.0 4.4E-32 1.5E-36 280.0 24.3 311 8-350 132-450 (529)
5 3l6x_A Catenin delta-1; cateni 100.0 3.4E-32 1.2E-36 275.4 22.3 343 8-352 60-479 (584)
6 3tpo_A Importin subunit alpha- 100.0 1E-31 3.5E-36 277.3 23.6 310 8-350 88-407 (529)
7 3now_A UNC-45 protein, SD10334 100.0 4.8E-32 1.6E-36 283.4 19.3 308 9-350 392-738 (810)
8 4b8j_A Importin subunit alpha- 100.0 1.3E-30 4.6E-35 269.9 25.2 343 8-351 86-445 (528)
9 3nmw_A APC variant protein; AR 100.0 8.3E-31 2.9E-35 252.5 20.5 269 11-313 47-339 (354)
10 3now_A UNC-45 protein, SD10334 100.0 3E-31 1E-35 277.4 18.5 342 6-350 300-695 (810)
11 3nmz_A APC variant protein; pr 100.0 4.7E-31 1.6E-35 261.6 17.4 301 15-349 48-408 (458)
12 3ul1_B Importin subunit alpha- 100.0 9.7E-31 3.3E-35 268.3 20.3 343 7-349 112-478 (510)
13 3nmw_A APC variant protein; AR 100.0 4.4E-31 1.5E-35 254.4 15.8 268 51-352 45-337 (354)
14 3hve_A Gigaxonin; ubiquitin, c 100.0 1E-30 3.6E-35 242.6 16.7 161 371-531 22-184 (256)
15 1wa5_B Importin alpha subunit; 100.0 1E-29 3.5E-34 263.2 25.1 345 8-352 99-460 (530)
16 1xm9_A Plakophilin 1; armadill 100.0 5.7E-30 1.9E-34 258.5 22.0 304 39-350 3-361 (457)
17 3htm_A Speckle-type POZ protei 100.0 2.6E-30 8.8E-35 225.2 15.4 150 369-518 23-172 (172)
18 3i3n_A Kelch-like protein 11; 100.0 3.1E-30 1E-34 242.5 13.5 160 371-530 23-191 (279)
19 2jdq_A Importin alpha-1 subuni 100.0 5.7E-29 2E-33 252.7 23.6 309 9-351 78-392 (450)
20 1wa5_B Importin alpha subunit; 100.0 1E-28 3.6E-33 255.7 24.3 342 9-350 144-511 (530)
21 3l6x_A Catenin delta-1; cateni 100.0 4E-29 1.4E-33 253.0 20.4 305 35-352 45-387 (584)
22 1jdh_A Beta-catenin; beta-cate 100.0 5.5E-29 1.9E-33 258.3 21.0 334 9-346 73-423 (529)
23 2jdq_A Importin alpha-1 subuni 100.0 1.9E-28 6.5E-33 248.8 24.5 309 8-350 32-348 (450)
24 4b8j_A Importin subunit alpha- 100.0 1.6E-28 5.5E-33 254.3 22.9 340 10-350 132-497 (528)
25 1jdh_A Beta-catenin; beta-cate 100.0 3.8E-28 1.3E-32 251.9 23.1 340 8-348 113-529 (529)
26 2z6h_A Catenin beta-1, beta-ca 100.0 5.7E-28 2E-32 255.7 24.8 343 8-351 110-529 (644)
27 2z6g_A B-catenin; FULL-length, 100.0 1.2E-27 4.2E-32 256.8 24.1 342 9-351 206-665 (780)
28 2z6h_A Catenin beta-1, beta-ca 100.0 7.3E-28 2.5E-32 254.9 21.6 334 9-346 70-420 (644)
29 4hxt_A De novo protein OR329; 99.9 1.4E-26 4.8E-31 215.6 21.3 241 38-311 2-244 (252)
30 3hqi_A Speckle-type POZ protei 99.9 3.1E-27 1.1E-31 226.1 17.0 148 371-518 165-312 (312)
31 4db8_A Armadillo-repeat protei 99.9 5E-26 1.7E-30 211.9 21.5 228 7-234 23-251 (252)
32 4hxt_A De novo protein OR329; 99.9 1E-25 3.5E-30 209.8 23.0 229 9-237 15-244 (252)
33 2z6g_A B-catenin; FULL-length, 99.9 9.8E-26 3.4E-30 242.1 24.9 340 8-351 162-520 (780)
34 4db8_A Armadillo-repeat protei 99.9 7.8E-26 2.7E-30 210.6 20.6 238 38-308 12-251 (252)
35 4eoz_A Speckle-type POZ protei 99.9 2.8E-27 9.5E-32 199.6 7.2 132 369-500 14-145 (145)
36 4db6_A Armadillo repeat protei 99.9 4.6E-24 1.6E-28 192.7 21.0 199 36-234 10-209 (210)
37 2vkp_A BTB/POZ domain-containi 99.9 2.4E-24 8.2E-29 171.6 11.4 104 374-478 2-109 (109)
38 2if5_A Zinc finger and BTB dom 99.9 6.1E-24 2.1E-28 172.3 11.9 104 371-474 16-119 (120)
39 4db6_A Armadillo repeat protei 99.9 1.3E-22 4.4E-27 183.1 20.6 187 7-193 23-209 (210)
40 1r29_A B-cell lymphoma 6 prote 99.9 1.6E-23 5.5E-28 171.5 12.5 105 371-476 20-125 (127)
41 2z8h_A Transcription regulator 99.9 8.9E-24 3.1E-28 175.4 8.7 111 371-483 27-138 (138)
42 3opb_A SWI5-dependent HO expre 99.9 6.1E-23 2.1E-27 210.4 16.2 309 11-349 349-728 (778)
43 1xqr_A HSPBP1 protein; armadil 99.9 7.7E-22 2.6E-26 184.8 21.7 225 9-234 53-287 (296)
44 3b84_A Zinc finger and BTB dom 99.9 1.6E-23 5.4E-28 169.1 8.7 102 371-476 15-116 (119)
45 2ppi_A Gigaxonin; BTB domain, 99.9 1.9E-23 6.6E-28 174.2 9.3 105 371-475 38-144 (144)
46 2yy9_A Zinc finger and BTB dom 99.9 2E-23 7E-28 172.2 8.1 107 371-481 16-122 (135)
47 1buo_A POZ domain, protein (pr 99.9 8.8E-23 3E-27 165.3 11.5 103 371-478 19-121 (121)
48 2vpk_A Myoneurin; transcriptio 99.9 8.6E-23 2.9E-27 164.3 10.7 101 371-475 13-115 (116)
49 3tt9_A Plakophilin-2; cell adh 99.9 5.9E-22 2E-26 177.2 16.8 195 39-235 9-230 (233)
50 1xqr_A HSPBP1 protein; armadil 99.9 3E-21 1E-25 180.8 21.0 183 52-235 54-239 (296)
51 2q81_A MIZ-1 protein; BTB/POZ 99.9 2.1E-22 7.2E-27 162.4 9.0 100 371-475 18-117 (119)
52 3tt9_A Plakophilin-2; cell adh 99.9 3E-21 1E-25 172.6 16.5 196 81-309 9-230 (233)
53 3ohu_A Transcription regulator 99.9 5E-23 1.7E-27 168.1 4.0 102 371-474 23-125 (125)
54 3ga1_A Nucleus accumbens-assoc 99.9 1.5E-22 5.1E-27 166.0 6.4 103 371-477 24-127 (129)
55 2ihc_A Transcription regulator 99.9 6.8E-23 2.3E-27 166.6 4.3 103 371-475 20-123 (124)
56 3opb_A SWI5-dependent HO expre 99.9 8.5E-21 2.9E-25 194.6 20.6 305 10-350 308-684 (778)
57 3m5b_A Zinc finger and BTB dom 99.8 2.3E-21 8E-26 155.3 7.8 93 375-476 25-117 (119)
58 3fkc_A Transcriptional regulat 99.8 1.6E-20 5.4E-25 150.3 10.1 93 371-468 22-115 (116)
59 1oyz_A Hypothetical protein YI 99.6 3.6E-14 1.2E-18 133.6 22.0 231 34-349 19-250 (280)
60 3grl_A General vesicular trans 99.6 6.4E-14 2.2E-18 140.2 22.7 314 8-351 34-396 (651)
61 3grl_A General vesicular trans 99.6 5.2E-14 1.8E-18 140.8 21.9 321 8-352 74-452 (651)
62 2ast_A S-phase kinase-associat 99.6 2E-14 6.7E-19 121.1 11.4 107 383-490 3-141 (159)
63 1oyz_A Hypothetical protein YI 99.5 4.1E-13 1.4E-17 126.4 20.4 241 8-344 35-277 (280)
64 4fdd_A Transportin-1; heat rep 99.5 8.2E-14 2.8E-18 152.4 15.7 334 8-351 60-431 (852)
65 4fdd_A Transportin-1; heat rep 99.5 8.3E-14 2.8E-18 152.3 12.3 305 9-352 141-474 (852)
66 3ltm_A Alpha-REP4; protein eng 99.5 1.2E-12 4.3E-17 117.4 17.7 189 37-311 18-206 (211)
67 1b3u_A Protein (protein phosph 99.5 5.6E-13 1.9E-17 139.6 15.4 296 7-350 175-471 (588)
68 3ltj_A Alpharep-4; protein eng 99.5 3.8E-12 1.3E-16 113.2 18.4 185 37-307 13-197 (201)
69 3ltm_A Alpha-REP4; protein eng 99.5 7.9E-13 2.7E-17 118.7 13.9 189 79-352 18-206 (211)
70 1b3u_A Protein (protein phosph 99.4 5.2E-13 1.8E-17 139.9 14.5 326 8-348 254-586 (588)
71 3ltj_A Alpharep-4; protein eng 99.4 2.1E-12 7E-17 115.0 13.4 186 79-349 13-198 (201)
72 1ibr_B P95, importin beta-1 su 99.4 1.4E-12 4.7E-17 132.3 13.0 298 14-351 107-439 (462)
73 4ajy_C Transcription elongatio 99.3 2.7E-12 9.4E-17 97.9 8.2 79 383-462 4-96 (97)
74 2vgl_B AP-2 complex subunit be 99.3 1.4E-11 4.9E-16 128.3 16.3 316 7-350 97-420 (591)
75 2vgl_B AP-2 complex subunit be 99.3 4E-11 1.4E-15 124.9 17.9 259 39-351 50-313 (591)
76 1fs1_B SKP1, cyclin A/CDK2-ass 99.3 2.4E-11 8.4E-16 99.6 10.1 100 383-487 4-130 (141)
77 1w63_A Adapter-related protein 99.2 1.1E-10 3.9E-15 121.9 13.8 306 7-350 118-452 (618)
78 1w63_A Adapter-related protein 99.2 1.4E-09 4.7E-14 113.8 20.4 309 7-350 153-491 (618)
79 1qgr_A Protein (importin beta 99.2 4.3E-10 1.5E-14 123.5 17.5 306 9-351 143-481 (876)
80 2bpt_A Importin beta-1 subunit 99.1 5.8E-10 2E-14 122.3 15.7 335 8-351 278-670 (861)
81 2p1m_A SKP1-like protein 1A; F 99.1 2.7E-11 9.1E-16 101.7 3.4 108 383-494 6-144 (160)
82 4gmo_A Putative uncharacterize 99.1 2.8E-10 9.5E-15 120.2 11.8 194 38-233 34-257 (684)
83 2bpt_A Importin beta-1 subunit 99.1 8.4E-10 2.9E-14 121.0 15.6 335 9-351 237-629 (861)
84 1qgr_A Protein (importin beta 99.1 4.3E-10 1.5E-14 123.6 13.0 298 14-352 107-440 (876)
85 1ibr_B P95, importin beta-1 su 99.0 1.4E-09 4.8E-14 110.0 13.4 265 9-309 143-438 (462)
86 1u6g_C TIP120 protein, CAND1; 99.0 4.3E-09 1.5E-13 119.7 17.0 271 40-350 8-285 (1230)
87 4gmo_A Putative uncharacterize 98.9 5.2E-09 1.8E-13 110.5 11.8 184 7-192 45-257 (684)
88 2vgl_A Adaptor protein complex 98.9 8.2E-08 2.8E-12 100.0 19.3 290 38-350 74-399 (621)
89 3b2a_A TON_1937, putative unch 98.8 1.6E-07 5.4E-12 80.8 16.3 187 39-236 34-220 (265)
90 1ho8_A Vacuolar ATP synthase s 98.8 2.2E-07 7.5E-12 90.0 17.1 312 37-352 76-479 (480)
91 2vgl_A Adaptor protein complex 98.8 2.2E-07 7.6E-12 96.7 18.6 287 6-350 158-471 (621)
92 1hv2_A Elongin C, ELC1; protei 98.8 3.6E-08 1.2E-12 74.9 8.9 79 383-463 6-99 (99)
93 3b2a_A TON_1937, putative unch 98.8 3.1E-07 1.1E-11 79.0 15.4 189 80-311 33-221 (265)
94 1u6g_C TIP120 protein, CAND1; 98.7 2.3E-07 7.9E-12 105.5 18.9 303 10-351 347-681 (1230)
95 3tjz_B Coatomer subunit gamma; 98.7 5.3E-07 1.8E-11 85.5 17.7 246 40-351 70-318 (355)
96 2fnj_C Transcription elongatio 98.7 3.1E-08 1E-12 74.9 7.0 80 383-463 3-96 (96)
97 2qk2_A LP04448P; mini spindles 98.7 1.2E-07 4E-12 86.7 12.4 186 41-235 18-206 (242)
98 4ady_A RPN2, 26S proteasome re 98.7 7E-07 2.4E-11 94.2 19.3 259 8-350 407-677 (963)
99 2eqx_A Kelch repeat and BTB do 98.7 1.6E-08 5.4E-13 78.3 4.5 57 475-531 5-61 (105)
100 3v7d_A Suppressor of kinetocho 98.6 2.3E-07 7.7E-12 78.2 10.2 97 382-479 8-134 (169)
101 1te4_A Conserved protein MTH18 98.6 7.1E-09 2.4E-13 84.7 0.6 121 37-191 11-131 (131)
102 3drz_A BTB/POZ domain-containi 98.6 4.5E-07 1.5E-11 70.1 10.1 94 382-476 7-106 (107)
103 3tjz_B Coatomer subunit gamma; 98.6 8.9E-07 3E-11 84.0 14.2 242 40-346 106-350 (355)
104 2qk2_A LP04448P; mini spindles 98.5 3.7E-07 1.3E-11 83.3 11.0 177 8-195 27-207 (242)
105 2db0_A 253AA long hypothetical 98.5 3.9E-06 1.3E-10 69.0 15.5 215 78-349 30-246 (253)
106 2qk1_A Protein STU2; STU2P, XM 98.5 1.2E-06 4E-11 79.9 13.2 192 42-234 20-220 (249)
107 1te4_A Conserved protein MTH18 98.5 1.2E-08 4.1E-13 83.3 -0.2 120 163-346 11-130 (131)
108 2db0_A 253AA long hypothetical 98.4 2.8E-05 9.7E-10 64.0 16.8 182 36-236 30-212 (253)
109 2qk1_A Protein STU2; STU2P, XM 98.3 4.2E-06 1.5E-10 76.2 12.4 185 9-194 29-221 (249)
110 1vcb_B Protein (elongin C); tu 98.3 1.4E-06 4.9E-11 67.4 7.4 80 383-463 19-112 (112)
111 4ady_A RPN2, 26S proteasome re 98.3 0.00012 4.1E-09 77.6 22.4 259 10-347 451-717 (963)
112 3dad_A FH1/FH2 domain-containi 98.1 9.3E-05 3.2E-09 68.2 15.7 156 41-196 121-289 (339)
113 1ho8_A Vacuolar ATP synthase s 97.9 0.00041 1.4E-08 67.4 17.2 220 11-233 183-475 (480)
114 3dad_A FH1/FH2 domain-containi 97.8 0.00048 1.6E-08 63.5 14.7 172 10-182 132-325 (339)
115 3drx_A BTB/POZ domain-containi 97.8 4.8E-05 1.7E-09 64.7 7.1 95 381-476 12-112 (202)
116 1wa5_C Importin alpha RE-expor 97.5 0.0039 1.3E-07 68.8 19.7 332 9-350 50-488 (960)
117 1wa5_C Importin alpha RE-expor 97.5 0.0013 4.3E-08 72.7 15.4 330 10-351 260-672 (960)
118 2iw3_A Elongation factor 3A; a 97.5 0.0028 9.5E-08 68.1 17.2 242 14-306 70-322 (986)
119 3oc3_A Helicase MOT1, MOT1; re 97.5 0.00024 8.3E-09 69.3 7.8 240 40-344 176-431 (800)
120 2iw3_A Elongation factor 3A; a 97.4 0.0027 9.1E-08 68.2 15.4 287 43-349 19-324 (986)
121 1lrv_A LRV, leucine-rich repea 97.3 0.00016 5.4E-09 64.9 4.7 44 283-344 198-241 (244)
122 4ffb_C Protein STU2; tubulin f 97.2 0.0069 2.4E-07 55.9 14.9 189 39-234 11-212 (278)
123 2fv2_A RCD1 required for cell 97.2 0.022 7.6E-07 50.0 16.4 218 9-232 14-266 (268)
124 2of3_A ZYG-9; multifunctional 97.1 0.012 4.2E-07 53.0 13.9 166 11-194 61-237 (266)
125 2fv2_A RCD1 required for cell 97.0 0.01 3.5E-07 52.1 12.7 172 15-191 75-266 (268)
126 2of3_A ZYG-9; multifunctional 97.0 0.013 4.4E-07 52.9 13.5 178 40-234 48-236 (266)
127 3oc3_A Helicase MOT1, MOT1; re 96.9 0.0019 6.6E-08 63.2 8.1 215 81-348 175-403 (800)
128 1lrv_A LRV, leucine-rich repea 96.9 0.0012 4.2E-08 59.1 6.2 103 7-145 61-169 (244)
129 1upk_A MO25 protein; transfera 96.9 0.27 9.2E-06 45.4 21.2 206 32-238 72-287 (341)
130 4ffb_C Protein STU2; tubulin f 96.8 0.014 4.8E-07 53.9 12.9 178 11-194 24-213 (278)
131 3kvt_A Potassium channel prote 96.7 0.00065 2.2E-08 52.7 2.4 96 382-478 6-106 (115)
132 2x1g_F Cadmus; transport prote 96.6 0.022 7.5E-07 62.9 14.7 295 8-350 256-616 (971)
133 1s1g_A Potassium voltage-gated 96.6 0.0046 1.6E-07 48.6 6.4 91 381-475 13-110 (124)
134 3ibv_A Exportin-T; karyopherin 96.4 0.081 2.8E-06 57.9 17.4 307 9-352 206-569 (980)
135 1nn7_A Potassium channel KV4.2 96.4 0.0024 8.3E-08 48.6 3.8 80 383-466 2-86 (105)
136 1upk_A MO25 protein; transfera 96.4 0.018 6.1E-07 53.1 10.0 202 116-349 72-283 (341)
137 2x1g_F Cadmus; transport prote 96.3 0.071 2.4E-06 58.8 16.5 290 11-351 204-574 (971)
138 2nz0_B Potassium voltage-gated 96.1 0.007 2.4E-07 48.6 4.9 84 379-466 33-121 (140)
139 3ibv_A Exportin-T; karyopherin 95.8 0.16 5.5E-06 55.6 15.7 332 10-350 104-525 (980)
140 2x19_B Importin-13; nuclear tr 95.7 0.23 7.9E-06 54.6 16.9 293 9-350 502-847 (963)
141 1t1d_A Protein (potassium chan 95.7 0.0079 2.7E-07 45.2 3.4 84 383-467 3-90 (100)
142 3l9t_A Putative uncharacterize 95.5 0.24 8.3E-06 43.2 12.7 143 82-244 73-218 (240)
143 3l9t_A Putative uncharacterize 95.2 0.16 5.4E-06 44.4 10.5 132 45-197 78-211 (240)
144 4hat_C Exportin-1; heat repeat 95.1 0.078 2.7E-06 58.2 10.3 140 92-235 465-619 (1023)
145 3c2g_A SYS-1 protein; beta-cat 95.0 0.67 2.3E-05 42.6 14.1 179 14-195 261-475 (619)
146 4hat_C Exportin-1; heat repeat 94.9 0.095 3.3E-06 57.5 10.3 143 50-197 465-622 (1023)
147 3ebb_A Phospholipase A2-activa 94.6 0.84 2.9E-05 42.1 14.5 167 40-209 105-279 (304)
148 3u0r_A Apoptosis inhibitor 5; 94.6 0.25 8.6E-06 47.8 11.0 164 49-232 39-204 (507)
149 2x19_B Importin-13; nuclear tr 94.4 0.76 2.6E-05 50.5 16.4 136 48-195 459-601 (963)
150 3u0r_A Apoptosis inhibitor 5; 93.4 0.72 2.5E-05 44.7 11.5 121 91-230 39-159 (507)
151 2f31_A Diaphanous protein homo 93.3 3.2 0.00011 36.6 15.3 125 72-197 36-184 (233)
152 3ebb_A Phospholipase A2-activa 93.2 1.1 3.8E-05 41.3 12.4 130 51-183 161-296 (304)
153 3m1i_C Exportin-1; heat repeat 92.8 1.1 3.6E-05 49.9 14.0 176 12-196 429-621 (1049)
154 3eg5_B Protein diaphanous homo 92.7 5.8 0.0002 37.9 17.1 178 42-221 70-281 (383)
155 3m1i_C Exportin-1; heat repeat 91.9 0.87 3E-05 50.5 11.8 102 92-195 465-571 (1049)
156 3c2g_A SYS-1 protein; beta-cat 91.1 1.8 6.2E-05 39.8 10.6 134 55-191 260-401 (619)
157 3qml_C Protein SLS1, nucleotid 90.0 3.4 0.00012 37.5 11.4 133 11-150 43-188 (315)
158 2bnx_A Diaphanous protein homo 90.0 13 0.00044 35.5 16.4 148 73-222 41-220 (386)
159 2f31_A Diaphanous protein homo 89.3 5.1 0.00018 35.2 12.2 131 9-139 67-216 (233)
160 3qml_C Protein SLS1, nucleotid 88.5 5 0.00017 36.4 11.3 136 93-233 41-188 (315)
161 1lsh_A Lipovitellin (LV-1N, LV 88.0 8.5 0.00029 42.5 15.3 158 50-236 407-578 (1056)
162 3a6p_A Exportin-5; exportin-5, 87.7 14 0.00048 41.5 17.1 176 9-195 60-278 (1204)
163 3eg5_B Protein diaphanous homo 87.4 7.9 0.00027 37.0 12.9 129 10-138 134-281 (383)
164 1lsh_A Lipovitellin (LV-1N, LV 85.8 4.7 0.00016 44.5 11.8 125 44-197 446-580 (1056)
165 2bnx_A Diaphanous protein homo 84.6 15 0.0005 35.2 13.3 131 9-139 71-220 (386)
166 2vkp_A BTB/POZ domain-containi 83.8 0.98 3.4E-05 34.2 3.9 32 478-509 77-108 (109)
167 3gjx_A Exportin-1; transport, 83.6 4.4 0.00015 44.6 10.1 104 92-197 491-599 (1073)
168 3gjx_A Exportin-1; transport, 82.6 9.4 0.00032 42.0 12.2 143 50-197 491-648 (1073)
169 3a6p_A Exportin-5; exportin-5, 82.2 26 0.00089 39.3 16.0 223 93-351 26-278 (1204)
170 3o2t_A Symplekin; heat repeat, 82.2 28 0.00096 33.0 13.8 127 53-192 40-182 (386)
171 2eqx_A Kelch repeat and BTB do 81.6 1.7 5.8E-05 32.7 4.4 67 442-509 4-82 (105)
172 2r9r_B Paddle chimera voltage 76.6 2.4 8.4E-05 42.4 4.9 86 381-467 52-141 (514)
173 3gs3_A Symplekin, LD45768P; he 73.2 50 0.0017 29.3 14.2 128 53-192 30-172 (257)
174 2yy9_A Zinc finger and BTB dom 70.7 1.8 6.2E-05 34.4 1.9 37 477-513 86-122 (135)
175 1r29_A B-cell lymphoma 6 prote 70.7 3.5 0.00012 32.1 3.6 32 478-509 95-126 (127)
176 3ldz_A STAM-1, signal transduc 70.1 17 0.00058 28.9 7.5 70 39-108 43-113 (140)
177 1buo_A POZ domain, protein (pr 66.8 7.2 0.00024 30.0 4.6 32 478-509 89-120 (121)
178 3o2t_A Symplekin; heat repeat, 66.8 47 0.0016 31.5 11.0 65 38-107 63-127 (386)
179 3b84_A Zinc finger and BTB dom 66.4 3.2 0.00011 32.0 2.5 32 478-509 86-117 (119)
180 2vpk_A Myoneurin; transcriptio 65.8 4.8 0.00017 30.7 3.4 30 478-507 86-115 (116)
181 2q81_A MIZ-1 protein; BTB/POZ 65.7 6.1 0.00021 30.3 4.0 31 477-507 87-117 (119)
182 1x5b_A Signal transducing adap 64.4 10 0.00036 31.0 5.3 70 39-108 53-124 (163)
183 1juq_A ADP-ribosylation factor 64.2 20 0.0007 29.5 7.1 71 39-109 51-128 (171)
184 3gs3_A Symplekin, LD45768P; he 63.6 62 0.0021 28.7 10.6 65 38-107 53-117 (257)
185 1mhq_A ADP-ribosylation factor 61.8 12 0.00042 30.0 5.2 71 39-109 39-116 (148)
186 3htm_A Speckle-type POZ protei 61.4 7.1 0.00024 32.2 4.0 35 445-479 131-165 (172)
187 2if5_A Zinc finger and BTB dom 61.3 9.5 0.00033 29.2 4.4 29 478-506 91-119 (120)
188 3g2s_A C-terminal fragment of 61.0 19 0.00063 29.0 6.1 71 39-109 49-126 (149)
189 2z8h_A Transcription regulator 58.3 2.3 7.9E-05 33.9 0.3 34 477-510 100-133 (138)
190 1vsy_5 Proteasome activator BL 57.3 35 0.0012 37.2 9.3 217 123-351 134-367 (997)
191 3ldz_A STAM-1, signal transduc 55.3 13 0.00044 29.5 4.2 69 165-233 43-113 (140)
192 1x5b_A Signal transducing adap 53.7 17 0.0006 29.7 4.9 69 165-233 53-124 (163)
193 1mhq_A ADP-ribosylation factor 51.6 21 0.00072 28.6 4.9 69 165-233 39-115 (148)
194 3zyq_A Hepatocyte growth facto 49.7 25 0.00086 30.6 5.5 70 39-108 46-117 (226)
195 3gae_A Protein DOA1; UFD3, CDC 49.0 19 0.00064 32.0 4.7 103 48-154 100-220 (253)
196 4eoz_A Speckle-type POZ protei 48.9 8.4 0.00029 30.6 2.2 33 478-510 91-123 (145)
197 2ppi_A Gigaxonin; BTB domain, 48.0 8.9 0.0003 30.6 2.2 29 478-506 115-143 (144)
198 3i3n_A Kelch-like protein 11; 47.6 61 0.0021 29.0 8.2 64 445-509 138-216 (279)
199 3g2s_A C-terminal fragment of 46.8 27 0.00091 28.1 4.8 70 165-234 49-126 (149)
200 3m5b_A Zinc finger and BTB dom 45.4 15 0.00052 28.1 3.1 32 477-508 86-117 (119)
201 3gae_A Protein DOA1; UFD3, CDC 45.2 22 0.00074 31.6 4.5 133 55-197 71-221 (253)
202 1juq_A ADP-ribosylation factor 44.2 26 0.0009 28.9 4.6 69 165-233 51-127 (171)
203 2ast_A S-phase kinase-associat 43.5 48 0.0016 26.8 6.1 64 446-511 49-127 (159)
204 3hqi_A Speckle-type POZ protei 42.5 19 0.00066 33.1 4.0 34 446-479 272-305 (312)
205 3pst_A Protein DOA1; protein d 41.8 2.2E+02 0.0074 27.3 10.9 102 49-154 273-392 (425)
206 3ga1_A Nucleus accumbens-assoc 39.7 4.7 0.00016 31.5 -0.7 33 477-509 95-127 (129)
207 1dvp_A HRS, hepatocyte growth 39.6 35 0.0012 29.5 4.9 70 39-108 43-114 (220)
208 2plx_B Peptide inhibitor; heli 37.6 32 0.0011 17.1 2.4 21 485-505 3-23 (26)
209 1fs1_B SKP1, cyclin A/CDK2-ass 37.4 1.5E+02 0.0051 23.3 8.0 81 430-512 25-123 (141)
210 1vsy_5 Proteasome activator BL 37.0 1.5E+02 0.0052 32.3 10.2 180 40-232 135-363 (997)
211 1elk_A Target of MYB1; superhe 36.6 42 0.0014 27.1 4.6 70 39-108 54-129 (157)
212 3l3f_X Protein DOA1, DOA1/UFD3 35.8 84 0.0029 29.5 7.0 103 48-154 209-329 (362)
213 3hve_A Gigaxonin; ubiquitin, c 35.6 60 0.0021 28.6 6.0 33 477-509 98-130 (256)
214 3pst_A Protein DOA1; protein d 33.7 81 0.0028 30.2 6.6 131 55-195 243-391 (425)
215 3l3f_X Protein DOA1, DOA1/UFD3 32.6 53 0.0018 30.8 5.1 131 55-195 180-328 (362)
216 4atg_A TAF6; transcription, TF 30.8 2.2E+02 0.0074 23.9 8.1 112 122-234 40-162 (196)
217 3vld_A DNA mismatch repair pro 27.8 4.4E+02 0.015 25.7 12.3 107 34-147 112-221 (500)
218 2xpp_A IWS1, ECU08_0440; trans 26.5 2.4E+02 0.0082 22.3 8.8 77 69-149 50-134 (145)
219 3zyq_A Hepatocyte growth facto 25.8 56 0.0019 28.3 3.8 69 165-233 46-117 (226)
220 1vdy_A Hypothetical protein (R 23.4 75 0.0026 25.1 3.7 68 39-109 50-130 (140)
221 1elk_A Target of MYB1; superhe 21.5 1.3E+02 0.0046 24.1 5.0 70 81-150 54-129 (157)
222 1dvp_A HRS, hepatocyte growth 20.9 1.1E+02 0.0039 26.2 4.8 70 81-150 43-114 (220)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=6.3e-33 Score=284.58 Aligned_cols=342 Identities=19% Similarity=0.230 Sum_probs=289.5
Q ss_pred hhhHHHHHHHHHHHHHh-h-hChhhHHHHHhcCCchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHH
Q 008940 8 AVNSVIRRAADAITNLA-H-ENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 84 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~-~-~~~~~~~~i~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 84 (548)
..++.+..|+..++.+. . .+|.. ..+++.|++|.|+++|+++ ++.+|..|+++|+|++.++++++..+++.|+++.
T Consensus 69 ~d~~~q~~a~~~~rklls~e~~ppi-~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~ 147 (510)
T 3ul1_B 69 NNLESQLQATQAARKLLSREKQPPI-DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA 147 (510)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSCCCH-HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCchH-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHH
Confidence 45688999999999875 2 34444 4577899999999999754 5899999999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCCh-----HHHHHHHHHHHHhhcCCchhHHH
Q 008940 85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-----ESQREAALLLGQFAATDSDCKVH 159 (548)
Q Consensus 85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-----~~~~~a~~~L~~l~~~~~~~~~~ 159 (548)
|+.+|.+++.++++.|+++|++|+.+++..++.+.+.|+++.|+.++.+.+. .+.+.++|+|.+++.+.......
T Consensus 148 Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 227 (510)
T 3ul1_B 148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 227 (510)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH
Confidence 9999999999999999999999999999999999999999999999987653 46788999999999876555444
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch-hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-Cc
Q 008940 160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-ED 237 (548)
Q Consensus 160 ~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~ 237 (548)
....|+++.|+.++.+++++++..++++|++|+.....+ ..+...|+++.|+.++.+++..++..++.+|++++.. +.
T Consensus 228 ~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~ 307 (510)
T 3ul1_B 228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE 307 (510)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH
Confidence 555689999999999999999999999999999877654 5567889999999999999999999999999999765 45
Q ss_pred chHHHHHhcCcccccccchhhhh---hhHHHH------HHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccC
Q 008940 238 NVADFIRVGGVQKLQDGEFIVQA---TKDCVA------KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 308 (548)
Q Consensus 238 ~~~~~~~~g~i~~L~~~~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~ 308 (548)
....+.+.|+++.|......... ...|+. ....+.+.+.+.++++.|+.++.+++..+|..|+|+|+|++.
T Consensus 308 ~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 308 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 66778899999988764432221 112221 123456677889999999999999999999999999999986
Q ss_pred C--CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 309 P--DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 309 ~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
+ .+....+++.|+++.|+++|.+++++++..++++|.|+...
T Consensus 388 ~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 388 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4 34567789999999999999999999999999999999764
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=280.54 Aligned_cols=309 Identities=20% Similarity=0.220 Sum_probs=265.1
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCc----------hHHHHhhccCC--HH-----HHH-------HHHHHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGI----------PPLVELLEFTD--TK-----VQR-------AAAGALRT 64 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i----------~~L~~ll~~~~--~~-----v~~-------~a~~~L~~ 64 (548)
.++++.+|+++|.+++.++++......+.|++ +.+++++.+.. .+ +++ .|+++|++
T Consensus 95 ~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~n 174 (458)
T 3nmz_A 95 SKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMK 174 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHH
Confidence 46999999999999999999888888888888 66667776542 12 444 99999999
Q ss_pred hhccCcchhhHhhhcCChHHHHHHhcc-----------CChHHHHHHHHHHHHhhcCChhHHHHHHh-cCChHHHHHhhh
Q 008940 65 LAFKNDENKNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLS 132 (548)
Q Consensus 65 l~~~~~~~~~~~~~~g~i~~Lv~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~ 132 (548)
++. ++++|..+.+.|+++.|+.+|.. .++.++..|+++|.||+.+++..+..+.. .|+||.|+++|.
T Consensus 175 ls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~ 253 (458)
T 3nmz_A 175 LSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK 253 (458)
T ss_dssp HTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG
T ss_pred hcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh
Confidence 987 69999999999999999999952 34678999999999999888777777765 456999999999
Q ss_pred cCChHHHHHHHHHHHHhhcC-CchhHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhc-CCcchhhhH-hcCChH
Q 008940 133 SCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ-DMHNQAGIA-HNGGLV 208 (548)
Q Consensus 133 ~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L~~ll-~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~-~~~~l~ 208 (548)
+++++++..|+|+|.||+.. ++.++..+.+.|+++.|+.+| +++++.+++.++.+|+||+. ..+++..+. ..|+++
T Consensus 254 s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~ 333 (458)
T 3nmz_A 254 SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 333 (458)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHH
Confidence 99999999999999999874 567889999999999999975 56788999999999999998 557777777 789999
Q ss_pred HHHHhhcCCCh----hHHHHHHHHHHhccc----CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhh
Q 008940 209 PLLKLLDSKNG----SLQHNAAFALYGLAD----NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 280 (548)
Q Consensus 209 ~L~~ll~~~~~----~v~~~a~~~L~~l~~----~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.|+.+|.++++ ++++.++++|+||+. +++++..+ .+.|+
T Consensus 334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i---------------------------------~~~G~ 380 (458)
T 3nmz_A 334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL---------------------------------RENNC 380 (458)
T ss_dssp HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHH---------------------------------HHTTH
T ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHH---------------------------------HHccc
Confidence 99999987654 489999999999985 55555444 44558
Q ss_pred hHHHHHHHHhhhhhhhhhHHHHhhhccC-CCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 281 LNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 281 ~~~L~~ll~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
++.|+.+|.+++..++.+|+++|+|++. +++++..+.+.|+++.|++++.++++.+++.|+++|.||+.+.
T Consensus 381 i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 381 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999999999999985 5778889999999999999999999999999999999999763
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.7e-32 Score=276.99 Aligned_cols=308 Identities=21% Similarity=0.241 Sum_probs=264.2
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
+..++++..|+.+|.+++.+++.++..+.+.|++|.|+++|+++++.++..|+++|.+++.++++++..+.+.|+++.|+
T Consensus 13 s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv 92 (457)
T 1xm9_A 13 SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAV 92 (457)
T ss_dssp SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Confidence 34578999999999999988888898899999999999999999999999999999999987799999999999999999
Q ss_pred HHhc-cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh--------c--------CChHHHHHHHHHHHHh
Q 008940 87 LMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--------S--------CCSESQREAALLLGQF 149 (548)
Q Consensus 87 ~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--------~--------~~~~~~~~a~~~L~~l 149 (548)
++|. ++++++++.++++|+||+.+ ++.+..+++ |++|.|++++. + .++++.+.|+|+|.|+
T Consensus 93 ~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nL 170 (457)
T 1xm9_A 93 SLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL 170 (457)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHH
Confidence 9999 88999999999999999988 778888888 99999999993 2 2456777999999999
Q ss_pred hcCCchhHHHHHhc-CChHHHHHhhCC-----------------------------------------------------
Q 008940 150 AATDSDCKVHIVQR-GAVRPLIEMLQS----------------------------------------------------- 175 (548)
Q Consensus 150 ~~~~~~~~~~~~~~-g~v~~L~~ll~~----------------------------------------------------- 175 (548)
+.. ++++..+.+. |+++.|+.++++
T Consensus 171 s~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (457)
T 1xm9_A 171 SSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGC 249 (457)
T ss_dssp TTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC------------
T ss_pred ccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccch
Confidence 977 8888888887 999998877752
Q ss_pred ----------------------------------------------CCHHHHHHHHHHHHHhhcCCcc------hhhhHh
Q 008940 176 ----------------------------------------------PDVQLREMSAFALGRLAQDMHN------QAGIAH 203 (548)
Q Consensus 176 ----------------------------------------------~~~~v~~~a~~~L~~l~~~~~~------~~~~~~ 203 (548)
+++.+++.|+++|+|++..... +..+.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~ 329 (457)
T 1xm9_A 250 FSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK 329 (457)
T ss_dssp ----------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTT
T ss_pred hhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHH
Confidence 1245677789999999976533 223446
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHH
Q 008940 204 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 283 (548)
Q Consensus 204 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
.|+++.|+++|.+++.+++..|+++|.|++.+++....+ ..+++++
T Consensus 330 ~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i----------------------------------~~~~i~~ 375 (457)
T 1xm9_A 330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM----------------------------------GNQVFPE 375 (457)
T ss_dssp SCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHH----------------------------------HHHTHHH
T ss_pred cCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHH----------------------------------HHhhhHH
Confidence 899999999999999999999999999999876554332 2357888
Q ss_pred HHHHHHhhh------hhhhhhHHHHhhhccCC-CccceeeecCCchHHHHHhhcCC-CCccchhhHHHHHHHhhhc
Q 008940 284 LLYLMRVAE------KGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGST-NPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 284 L~~ll~~~~------~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~ 351 (548)
|+.+|.+++ .++...++++|.++... ++..+.+.+.||++.|++++.++ ++++++.|++.|.++..+.
T Consensus 376 Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 889888754 36788999999999754 55778889999999999999999 8999999999999987653
No 4
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=4.4e-32 Score=280.02 Aligned_cols=311 Identities=17% Similarity=0.232 Sum_probs=276.2
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 87 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 87 (548)
..++++..|+++|.+++.++++....+.+.|++|.|+.+|++++..+++.|+++|++++.++++++..+.+.|+++.|+.
T Consensus 132 ~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~ 211 (529)
T 3tpo_A 132 DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLA 211 (529)
T ss_dssp TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHH
Confidence 45789999999999999888999999999999999999999999999999999999999878999999999999999999
Q ss_pred HhccCC-----hHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008940 88 MLRSED-----SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ 162 (548)
Q Consensus 88 ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 162 (548)
++..++ ..+...++++|.+++.+...........+++|.|+.++.+++++++..++|+|.+++.+.+.....+..
T Consensus 212 lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~ 291 (529)
T 3tpo_A 212 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK 291 (529)
T ss_dssp TTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT
T ss_pred HHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh
Confidence 998654 356788999999999876554445555688999999999999999999999999999888788888899
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHH
Q 008940 163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 241 (548)
Q Consensus 163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 241 (548)
.|+++.|+.++.++++.++..++.+|+|++...+. ...+.+.|+++.|..++.++++.++..|+++|+|++.+.....
T Consensus 292 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~- 370 (529)
T 3tpo_A 292 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI- 370 (529)
T ss_dssp TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHH-
T ss_pred ccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHH-
Confidence 99999999999999999999999999999976644 5678889999999999999999999999999999987654322
Q ss_pred HHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC--CccceeeecC
Q 008940 242 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDG 319 (548)
Q Consensus 242 ~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~--~~~~~~~~~~ 319 (548)
..+.+.|+++.|+.++.+++..++..|+|+|+|++.+ ++....+++.
T Consensus 371 -------------------------------~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~ 419 (529)
T 3tpo_A 371 -------------------------------QQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC 419 (529)
T ss_dssp -------------------------------HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred -------------------------------HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 2245567899999999999999999999999999864 3456778999
Q ss_pred CchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 320 GGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 320 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
|+++.|+++|.+++++++..++.+|.++...
T Consensus 420 g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 420 GIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999764
No 5
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3.4e-32 Score=275.42 Aligned_cols=343 Identities=21% Similarity=0.254 Sum_probs=275.6
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHH
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLI 86 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv 86 (548)
..++++..|+.+|.+++..+++++..+.+.|+||.|+++|++++..+++.|+++|.+|+.+ +++++..+.+.|+++.|+
T Consensus 60 ~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV 139 (584)
T 3l6x_A 60 RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALV 139 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHH
Confidence 4578999999999999988999999999999999999999999999999999999999985 689999999999999999
Q ss_pred HHhcc-CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh------------------cCChHHHHHHHHHHH
Q 008940 87 LMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS------------------SCCSESQREAALLLG 147 (548)
Q Consensus 87 ~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~------------------~~~~~~~~~a~~~L~ 147 (548)
.+|.+ .+.++++.++++|++|+.. ++.+..++. +++|.|++++. ..++++++.|+++|.
T Consensus 140 ~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~ 217 (584)
T 3l6x_A 140 RLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLR 217 (584)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHH
Confidence 99996 5789999999999999874 777888886 57999999872 124689999999999
Q ss_pred HhhcCCchhHHHHHhc-CChHHHHHhhCC------CCHHHHHHHHHHHHHhhcCCcc-----------------------
Q 008940 148 QFAATDSDCKVHIVQR-GAVRPLIEMLQS------PDVQLREMSAFALGRLAQDMHN----------------------- 197 (548)
Q Consensus 148 ~l~~~~~~~~~~~~~~-g~v~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~----------------------- 197 (548)
||++.++..+..+.+. |+++.|+.++++ .+...++.|+++|+||+...+.
T Consensus 218 NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 297 (584)
T 3l6x_A 218 NVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSP 297 (584)
T ss_dssp HHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CC
T ss_pred HHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccC
Confidence 9998887888888874 567799999874 4667999999999999965210
Q ss_pred ---hhhhHhcCChHHHHHhhc-CCChhHHHHHHHHHHhcccCCc-----chHHHHHhcCcccccccchhhhh-hhHHHHH
Q 008940 198 ---QAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNED-----NVADFIRVGGVQKLQDGEFIVQA-TKDCVAK 267 (548)
Q Consensus 198 ---~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~g~i~~L~~~~~~~~~-~~~~~~~ 267 (548)
...+...++++.++.+|. +.++.+++.|+++|.||+.... .+..+.+.++++.|++....... .......
T Consensus 298 ~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~ 377 (584)
T 3l6x_A 298 ARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASG 377 (584)
T ss_dssp CCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred chhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 112223344667788886 4679999999999999987542 22344457888887664432221 1111222
Q ss_pred HHHHH------HHhhhhhhhHHHHHHHHhh--------hhhhhhhHHHHhhhccC-CCccceeeecCCchHHHHHhhcCC
Q 008940 268 TLKRL------EEKIHGRVLNHLLYLMRVA--------EKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGST 332 (548)
Q Consensus 268 ~~~~~------~~~~~~~~~~~L~~ll~~~--------~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~ 332 (548)
++.++ +..+..++++.|+.+|.++ +.+++..|+++|+|++. ++++++.+.+.|+++.|++++.++
T Consensus 378 aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~ 457 (584)
T 3l6x_A 378 ALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSG 457 (584)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCS
T ss_pred HHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC
Confidence 33222 3445788999999999886 35778899999999965 566888999999999999999986
Q ss_pred --CCccchhhHHHHHHHhhhcc
Q 008940 333 --NPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 333 --~~~v~~~a~~~L~~l~~~~~ 352 (548)
.+.+++.|+++|++|..+..
T Consensus 458 ~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 458 NRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp SSCHHHHHHHHHHHHHHHTSHH
T ss_pred CCChHHHHHHHHHHHHHHcCHH
Confidence 77889999999999987653
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1e-31 Score=277.27 Aligned_cols=310 Identities=20% Similarity=0.262 Sum_probs=268.8
Q ss_pred hhhHHHHHHHHHHHHHh-hhChhhHHHHHhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 8 AVNSVIRRAADAITNLA-HENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
..++.+..|+..+.++. .+.......+++.|++|.|+++|+. +++.++..|+++|.+++.++++++..+++.|+++.|
T Consensus 88 ~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~L 167 (529)
T 3tpo_A 88 NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF 167 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 34677889999998875 3333334567889999999999975 558999999999999999889999999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-----hHHHHHHHHHHHHhhcCCchhHHHH
Q 008940 86 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-----SESQREAALLLGQFAATDSDCKVHI 160 (548)
Q Consensus 86 v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~ 160 (548)
+.+|.+++.++++.|+++|++|+.++++++..+.+.|+++.|+.++...+ ..+.+.++|+|.+++.+........
T Consensus 168 v~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 247 (529)
T 3tpo_A 168 ISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 247 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHH
Confidence 99999999999999999999999999999999999999999999998755 3467889999999998765555555
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc-
Q 008940 161 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN- 238 (548)
Q Consensus 161 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~- 238 (548)
...|++|.|+.++.+++++++..++++|.+++..... ...+...|+++.|+.++.++++.++..++.+|++++...+.
T Consensus 248 ~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 327 (529)
T 3tpo_A 248 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ 327 (529)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHH
Confidence 5578999999999999999999999999999987765 45567889999999999999999999999999999875543
Q ss_pred hHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC-ccceeee
Q 008940 239 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFI 317 (548)
Q Consensus 239 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~ 317 (548)
...+ .+.|+++.|+.++.++++.++..|+|+|+|++.+. ..+..+.
T Consensus 328 ~~~i---------------------------------~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~ 374 (529)
T 3tpo_A 328 TQKV---------------------------------IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 374 (529)
T ss_dssp HHHH---------------------------------HHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHH---------------------------------hhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3333 44557788889999999999999999999998764 4667788
Q ss_pred cCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 318 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 318 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
+.|+++.|+.++.+++.+++..|+++|.|++.+
T Consensus 375 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 375 NHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999875
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.98 E-value=4.8e-32 Score=283.37 Aligned_cols=308 Identities=18% Similarity=0.190 Sum_probs=264.4
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHH-hcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcc----------------
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVR-MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE---------------- 71 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---------------- 71 (548)
.+++++.|+++|.+|+ .+++.+..+. +.|++|.|+++|+++++.++..|+++|.|++.+.+.
T Consensus 392 d~~v~~~AveaLayLS-~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~ 470 (810)
T 3now_A 392 DKDIRRWAADGLAYLT-LDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQ 470 (810)
T ss_dssp CSSHHHHHHHHHHHHT-TSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCC
T ss_pred CHHHHHHHHHHHHHHh-CCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhc
Confidence 4678999999999999 5667776666 579999999999999999999999999999985421
Q ss_pred -------------hh---hHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC
Q 008940 72 -------------NK---NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC 135 (548)
Q Consensus 72 -------------~~---~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 135 (548)
++ +.+.+.|+++.|+.++.++++.+++.|+|+|+||+.+ +++|..+++.|++|.|+.++.+++
T Consensus 471 ~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~ 549 (810)
T 3now_A 471 HIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGT 549 (810)
T ss_dssp SCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred cCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCC
Confidence 12 6788899999999999999999999999999999865 779999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCchhHHH--HHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCC-cchhhhHhcCChHHHH
Q 008940 136 SESQREAALLLGQFAATDSDCKVH--IVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLL 211 (548)
Q Consensus 136 ~~~~~~a~~~L~~l~~~~~~~~~~--~~~~g~v~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~ 211 (548)
+..++.|+|+|.+++.+....... ....|++++|+.+|.++ +...+..|+++|.||+..+ +.+..+++.|+++.|.
T Consensus 550 ~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv 629 (810)
T 3now_A 550 EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIE 629 (810)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Confidence 999999999999998653322110 01246999999999875 3345678999999999875 5577889999999999
Q ss_pred HhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 008940 212 KLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA 291 (548)
Q Consensus 212 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~ 291 (548)
.++.++++.+++.|+++|+|++.+++.+..+.+ ..+.++.|+.++.+.
T Consensus 630 ~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~--------------------------------~~g~l~~Lv~LL~s~ 677 (810)
T 3now_A 630 YYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEG--------------------------------NNDRVKFLALLCEDE 677 (810)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHS--------------------------------SSSHHHHHHHGGGCS
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHh--------------------------------ccCcHHHHHHHhcCC
Confidence 999999999999999999999988776655532 245789999999999
Q ss_pred hhhhhhhHHHHhhhccC-CCccceeeec-CCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 292 EKGVQRRVALALAHLCS-PDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 292 ~~~~~~~a~~aL~~l~~-~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
+..+|.+|+|+|++++. ++...+.+++ .|+++.|++++.+++.++|..|+|++.|++.+
T Consensus 678 d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 678 DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998 4566667777 89999999999999999999999999999874
No 8
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=1.3e-30 Score=269.94 Aligned_cols=343 Identities=21% Similarity=0.252 Sum_probs=292.8
Q ss_pred hhhHHHHHHHHHHHHHhhhCh-hhHHHHHhcCCchHHHHhhccCC-HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 8 AVNSVIRRAADAITNLAHENS-SIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
..++++..|+.+|.+++...+ .....+.+.|+++.|+++|++++ +.++..|+++|.+++.++++++..+.+.|+++.|
T Consensus 86 ~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L 165 (528)
T 4b8j_A 86 DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 165 (528)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHH
Confidence 357889999999999975443 55667888999999999999887 9999999999999999889999999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh-hcCChHHHHHHHHHHHHhhcCCchhHHHHHhcC
Q 008940 86 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRG 164 (548)
Q Consensus 86 v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 164 (548)
+.+|.++++.++..|+++|++++.+.+..+..+...|+++.|+.++ .+.++.++..++|+|.+++...+... .....|
T Consensus 166 ~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~ 244 (528)
T 4b8j_A 166 VKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS-FEQTRP 244 (528)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC-HHHHTT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc-HHHHHH
Confidence 9999999999999999999999999899999999999999999999 66789999999999999997754333 344579
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch-hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-CcchHHH
Q 008940 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADF 242 (548)
Q Consensus 165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~ 242 (548)
+++.|+.++.++++.++..++++|++++...+.+ ..+.+.|+++.|+.+|.++++.++..|+++|++++.. +.....+
T Consensus 245 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 324 (528)
T 4b8j_A 245 ALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCI 324 (528)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999876654 5677889999999999999999999999999999874 4556667
Q ss_pred HHhcCcccccccchhh-hh---hhHHHH------HHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC--C
Q 008940 243 IRVGGVQKLQDGEFIV-QA---TKDCVA------KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--D 310 (548)
Q Consensus 243 ~~~g~i~~L~~~~~~~-~~---~~~~~~------~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~--~ 310 (548)
.+.|+++.|+...... .. ...|+. ........+.+.++++.|+.+|.++++.++..|+++|++++.. +
T Consensus 325 ~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~ 404 (528)
T 4b8j_A 325 IDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSH 404 (528)
T ss_dssp HTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH
Confidence 7888888876543322 11 111111 1223455667789999999999999999999999999999865 4
Q ss_pred ccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 311 DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 311 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
+....+.+.|+++.|+.++.++++.++..++++|.++....
T Consensus 405 ~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 405 DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 56677888999999999999999999999999999998754
No 9
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=8.3e-31 Score=252.50 Aligned_cols=269 Identities=20% Similarity=0.235 Sum_probs=233.7
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc-----------CCHHHHHHHHHHHHHhhccCcchhhHhhhc
Q 008940 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-----------TDTKVQRAAAGALRTLAFKNDENKNQIVEC 79 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 79 (548)
..+.+|+++|.+++ .++++|..+.+.|++++|+.+|.. .++.+|..|+++|.+++.+++.++..+...
T Consensus 47 ~~~~~A~~aL~nls-~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLS-FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 34458999999999 569999999999999999999953 237799999999999998777788888654
Q ss_pred -CChHHHHHHhccCChHHHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhh-hcCChHHHHHHHHHHHHhhcCCchh
Q 008940 80 -NALPTLILMLRSEDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDC 156 (548)
Q Consensus 80 -g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~ 156 (548)
|.++.|+.+|.++++++++.|+++|++|+.. +++.+..+.+.|++|.|+++| ++.++++++.++.+|+||+..++++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 5599999999999999999999999999975 577899999999999999975 6677899999999999999867777
Q ss_pred HHHHH-hcCChHHHHHhhCCCCH----HHHHHHHHHHHHhhc----CCcchhhhHhcCChHHHHHhhcCCChhHHHHHHH
Q 008940 157 KVHIV-QRGAVRPLIEMLQSPDV----QLREMSAFALGRLAQ----DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF 227 (548)
Q Consensus 157 ~~~~~-~~g~v~~L~~ll~~~~~----~v~~~a~~~L~~l~~----~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~ 227 (548)
+..+. ..|+++.|+.+|+++++ ++++.++++|+||+. .++.+..+.+.|+++.|+.+|.+++..+++.|++
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 77777 78999999999997654 599999999999996 6677888899999999999999999999999999
Q ss_pred HHHhccc-CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhc
Q 008940 228 ALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 306 (548)
Q Consensus 228 ~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l 306 (548)
+|+|++. +++++..+.+ .|+++.|+.+++++++.++..|+++|.||
T Consensus 286 aL~nLa~~~~~~~~~i~~---------------------------------~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL 332 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWD---------------------------------MGAVSMLKNLIHSKHKMIAMGSAAALRNL 332 (354)
T ss_dssp HHHHHTSSCHHHHHHHHH---------------------------------TTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHH---------------------------------CCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 9999995 5555555544 45788899999999999999999999999
Q ss_pred cCCCccc
Q 008940 307 CSPDDQR 313 (548)
Q Consensus 307 ~~~~~~~ 313 (548)
+.+.+.+
T Consensus 333 ~~~~~~~ 339 (354)
T 3nmw_A 333 MANRPAK 339 (354)
T ss_dssp HTTCCGG
T ss_pred HcCCHHH
Confidence 8775533
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=3e-31 Score=277.37 Aligned_cols=342 Identities=13% Similarity=0.088 Sum_probs=278.7
Q ss_pred hhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCc-chhhHhhhcCC---
Q 008940 6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNA--- 81 (548)
Q Consensus 6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~--- 81 (548)
++..+.+++.|++++.+.+ .++..+..+.+.|+ +.|+.++++++..+|..|+.+|.+++.... +........|.
T Consensus 300 ~s~~~~~q~~A~~al~~aa-~~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~ 377 (810)
T 3now_A 300 TTDDELQQRVACECLIAAS-SKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALK 377 (810)
T ss_dssp HSSCHHHHHHHHHHHHHHT-TSHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc-CCcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHH
Confidence 3456788899999999988 67999999999875 999999999999999999999999975221 33323333444
Q ss_pred -hHHHHHHhccC--ChHHHHHHHHHHHHhhcCChhHHHHHH-hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc---
Q 008940 82 -LPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVL-AAGALQPVIGLLSSCCSESQREAALLLGQFAATDS--- 154 (548)
Q Consensus 82 -i~~Lv~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--- 154 (548)
++.++++|.++ +.++++.|+++|.+|+.+ ++.+..++ +.|++|.|+.+++++++.++..++++|.|++.+.+
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~ 456 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE 456 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh
Confidence 55677888877 899999999999999876 55666666 57999999999999999999999999999997542
Q ss_pred --------------------------hhH---HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcC
Q 008940 155 --------------------------DCK---VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 205 (548)
Q Consensus 155 --------------------------~~~---~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 205 (548)
..+ +.+++.|++|.|+.+++++++.+++.|+|+|+|++.+.+++..+.+.|
T Consensus 457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~G 536 (810)
T 3now_A 457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEG 536 (810)
T ss_dssp CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 112 578889999999999999999999999999999998888899999999
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHH---HHhcCcccccccchhhhh----hhHHHHH------HHHHH
Q 008940 206 GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF---IRVGGVQKLQDGEFIVQA----TKDCVAK------TLKRL 272 (548)
Q Consensus 206 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~---~~~g~i~~L~~~~~~~~~----~~~~~~~------~~~~~ 272 (548)
++++|+.+|.++++..++.|+++|.+++.+.+....+ ...|++++|+........ ...+.+- .-+..
T Consensus 537 aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~ 616 (810)
T 3now_A 537 GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR 616 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999999998654333222 124678877654321111 1112211 12445
Q ss_pred HHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec-CCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 273 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 273 ~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
+.+++.|+++.|+.+|.++++.+|..|+++|+|++.+++.+..+.+ .|+++.|+.++++++..+|..|+++|.+++.+
T Consensus 617 ~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 617 QRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV 695 (810)
T ss_dssp HHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Confidence 5677889999999999999999999999999999998887766665 78999999999999999999999999999984
No 11
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=4.7e-31 Score=261.61 Aligned_cols=301 Identities=20% Similarity=0.256 Sum_probs=254.3
Q ss_pred HHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC------------CHHHHHHHHHHHHHhhccCcchhhHhhhcCCh
Q 008940 15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT------------DTKVQRAAAGALRTLAFKNDENKNQIVECNAL 82 (548)
Q Consensus 15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 82 (548)
...+.|..+. .+++.+..+++.|++|.|+++|+.. +++++.+|+++|.|++.++++......+.|++
T Consensus 48 ~~~~~ll~~~-~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~ 126 (458)
T 3nmz_A 48 DMSRTLLAMS-SSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVL 126 (458)
T ss_dssp HHHHHHHHHH-SSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHH
Confidence 3677888888 5777888899999999999999863 36999999999999999999999888888877
Q ss_pred ----------HHHHHHhccCC--hH-----HHH-------HHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-----
Q 008940 83 ----------PTLILMLRSED--SA-----IHY-------EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS----- 133 (548)
Q Consensus 83 ----------~~Lv~ll~~~~--~~-----v~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----- 133 (548)
+.+++++.+.+ .+ +++ .|+|+|+|++.+ +++|+.+.+.|+++.|+.++..
T Consensus 127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~ 205 (458)
T 3nmz_A 127 HLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMY 205 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhccc
Confidence 55667776542 22 444 999999999765 8999999999999999999952
Q ss_pred ------CChHHHHHHHHHHHHhhcCCchhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC--CcchhhhHhc
Q 008940 134 ------CCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGRLAQD--MHNQAGIAHN 204 (548)
Q Consensus 134 ------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~ 204 (548)
.++.+++.|+|+|.|++.+++.++..+.. .|++|.|+.+|+++++++++.|+++|+||+.. ..++..+.+.
T Consensus 206 ~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~ 285 (458)
T 3nmz_A 206 GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV 285 (458)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT
T ss_pred ccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc
Confidence 23668999999999999887777776654 56699999999999999999999999999975 3567888999
Q ss_pred CChHHHHHhh-cCCChhHHHHHHHHHHhccc-CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhH
Q 008940 205 GGLVPLLKLL-DSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 282 (548)
Q Consensus 205 ~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|+++.|+++| .++++.+++.++.+|+||+. .++++..+. ...|+++
T Consensus 286 GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~--------------------------------~~~Gal~ 333 (458)
T 3nmz_A 286 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC--------------------------------AVDGALA 333 (458)
T ss_dssp THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH--------------------------------HSTTHHH
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH--------------------------------HhcCcHH
Confidence 9999999975 56788999999999999998 556665553 1345888
Q ss_pred HHHHHHHhhhh----hhhhhHHHHhhhccC----CCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940 283 HLLYLMRVAEK----GVQRRVALALAHLCS----PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 349 (548)
Q Consensus 283 ~L~~ll~~~~~----~~~~~a~~aL~~l~~----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 349 (548)
.|+.+|.+.+. .++..|+++|.|++. ++++++.+.+.|+++.|+++|.+++..+++.|+++|.|++.
T Consensus 334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 89999987554 489999999999984 67788899999999999999999999999999999999985
No 12
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=9.7e-31 Score=268.34 Aligned_cols=343 Identities=16% Similarity=0.223 Sum_probs=289.3
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
...+++|..|+++|.+++.++++.+..+.+.|++|.|+++|++++..+++.|+++|++++.++++.+..+.+.|+++.|+
T Consensus 112 ~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll 191 (510)
T 3ul1_B 112 TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 191 (510)
T ss_dssp TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHH
Confidence 34578999999999999988999999999999999999999999999999999999999987889999999999999999
Q ss_pred HHhccCC-----hHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHH
Q 008940 87 LMLRSED-----SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 161 (548)
Q Consensus 87 ~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 161 (548)
.++..++ ..+++.+++++.+++.+...........+++|.|++++.+.+++++..++|+|.+++...+.....+.
T Consensus 192 ~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~ 271 (510)
T 3ul1_B 192 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV 271 (510)
T ss_dssp HHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHH
Confidence 9998654 35678899999999987654444455567899999999999999999999999999988777778888
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-Ccch
Q 008940 162 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNV 239 (548)
Q Consensus 162 ~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~ 239 (548)
+.|+++.|+.++.++++.++..++++|+|++...+. ...+.+.|+++.|..++.++++.++..++++|+|++.+ +...
T Consensus 272 ~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~ 351 (510)
T 3ul1_B 272 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI 351 (510)
T ss_dssp TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHH
Confidence 999999999999999999999999999999876654 56778899999999999999999999999999999874 5566
Q ss_pred HHHHHhcCcccccccchh----hhhhhHHHH------HHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC
Q 008940 240 ADFIRVGGVQKLQDGEFI----VQATKDCVA------KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 309 (548)
Q Consensus 240 ~~~~~~g~i~~L~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~ 309 (548)
..+.+.|+++.|+..... ......+.- ...+++..+.+.|+++.|+.+|++.++.++..++++|.++...
T Consensus 352 ~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 352 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 777788999887663322 221111111 1234556678899999999999999999999999999998641
Q ss_pred -----C--ccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940 310 -----D--DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 349 (548)
Q Consensus 310 -----~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 349 (548)
. ..+..+.+.||++.|..|..+++.++...|...|-+...
T Consensus 432 ~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 432 AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred hHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 1 123567788999999999999999999999888877654
No 13
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=4.4e-31 Score=254.44 Aligned_cols=268 Identities=19% Similarity=0.219 Sum_probs=233.6
Q ss_pred CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc-----------CChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940 51 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVL 119 (548)
Q Consensus 51 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 119 (548)
....+..|+++|.+++. ++++|..+.+.|+++.|+.+|.. .+++++..|+++|.+|+.+++..+..+.
T Consensus 45 ~~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34566789999999997 69999999999999999999952 2467999999999999988887877776
Q ss_pred hc-CChHHHHHhhhcCChHHHHHHHHHHHHhhcC-CchhHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhc-CC
Q 008940 120 AA-GALQPVIGLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ-DM 195 (548)
Q Consensus 120 ~~-g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L~~ll-~~~~~~v~~~a~~~L~~l~~-~~ 195 (548)
.. |+||.|+++|.++++++++.|+++|.||+.. ++.++..+.+.|+++.|+.+| +++++.+++.++.+|+||+. .+
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 54 5599999999999999999999999999875 567889999999999999974 66788999999999999998 44
Q ss_pred cchhhhH-hcCChHHHHHhhcCCCh----hHHHHHHHHHHhccc----CCcchHHHHHhcCcccccccchhhhhhhHHHH
Q 008940 196 HNQAGIA-HNGGLVPLLKLLDSKNG----SLQHNAAFALYGLAD----NEDNVADFIRVGGVQKLQDGEFIVQATKDCVA 266 (548)
Q Consensus 196 ~~~~~~~-~~~~l~~L~~ll~~~~~----~v~~~a~~~L~~l~~----~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~ 266 (548)
+++..+. ..|+++.|+.+|.++++ ++++.++++|.+|+. +++++..+
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i------------------------ 259 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL------------------------ 259 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH------------------------
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHH------------------------
Confidence 6677777 78999999999987654 489999999999985 55555444
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccC-CCccceeeecCCchHHHHHhhcCCCCccchhhHHHHH
Q 008940 267 KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 345 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 345 (548)
.+.|+++.|+.+|.+++..++..|+++|.|++. ++++++.+.+.|+++.|++++.++++.+++.|+++|.
T Consensus 260 ---------~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~ 330 (354)
T 3nmw_A 260 ---------RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330 (354)
T ss_dssp ---------HTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred ---------HHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 445588999999999999999999999999995 5678889999999999999999999999999999999
Q ss_pred HHhhhcc
Q 008940 346 KLANKAT 352 (548)
Q Consensus 346 ~l~~~~~ 352 (548)
||+.+..
T Consensus 331 nL~~~~~ 337 (354)
T 3nmw_A 331 NLMANRP 337 (354)
T ss_dssp HHHTTCC
T ss_pred HHHcCCH
Confidence 9998643
No 14
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.97 E-value=1e-30 Score=242.61 Aligned_cols=161 Identities=21% Similarity=0.335 Sum_probs=142.9
Q ss_pred hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCC--CCCCCceecCCCCHHHHHHHHHHHhcCccccch
Q 008940 371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTL 448 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~ 448 (548)
.++++.++.+||+++.++|+.|+|||.||+++|+||++||.+++. |+....|.++++++++|+.+++|+|||++.++.
T Consensus 22 l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~ 101 (256)
T 3hve_A 22 LSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNE 101 (256)
T ss_dssp HHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-
T ss_pred HHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccH
Confidence 466789999999999999999999999999999999999999887 677789999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHH
Q 008940 449 DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIP 528 (548)
Q Consensus 449 ~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~ 528 (548)
+++.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|+++.|.+.|.+||.+||.++.++++|.+|+.+.+.
T Consensus 102 ~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~ 181 (256)
T 3hve_A 102 DTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLK 181 (256)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHHH
T ss_pred hHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999777655
Q ss_pred HHH
Q 008940 529 EIH 531 (548)
Q Consensus 529 ~~~ 531 (548)
+++
T Consensus 182 ~lL 184 (256)
T 3hve_A 182 EVI 184 (256)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=1e-29 Score=263.21 Aligned_cols=345 Identities=19% Similarity=0.192 Sum_probs=289.9
Q ss_pred hhhHHHHHHHHHHHHHhhh-ChhhHHHHHhcCCchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 8 AVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
..++++..|+..|.++... +......+.+.|+++.|+++|+++ ++.++..|+++|.+++.++++.+..+.+.|+++.|
T Consensus 99 ~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L 178 (530)
T 1wa5_B 99 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLF 178 (530)
T ss_dssp SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH
Confidence 3578899999999999643 234445677889999999999997 89999999999999999878899999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940 86 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 165 (548)
Q Consensus 86 v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 165 (548)
+.+|.++++.++..|+++|++++.+.+..+..+...|+++.|+.++.+.++.++..++|+|.+++.+...........++
T Consensus 179 v~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 258 (530)
T 1wa5_B 179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA 258 (530)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGG
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhH
Confidence 99999999999999999999999988889999999999999999999988999999999999999765333345556899
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-chhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-CcchHHHH
Q 008940 166 VRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFI 243 (548)
Q Consensus 166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~ 243 (548)
++.|+.++.++++.++..++++|++++...+ ....+.+.|+++.|+.++.++++.++..++++|++++.. +.....+.
T Consensus 259 l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 338 (530)
T 1wa5_B 259 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI 338 (530)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999997654 356677789999999999999999999999999999875 44556667
Q ss_pred HhcCcccccccchhhhh-hhHHHHHH--------HHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC--C--
Q 008940 244 RVGGVQKLQDGEFIVQA-TKDCVAKT--------LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--D-- 310 (548)
Q Consensus 244 ~~g~i~~L~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~--~-- 310 (548)
+.|+++.|+........ .......+ ...++.+.+.++++.|+.+|.++++.++..|+++|++++.. +
T Consensus 339 ~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 418 (530)
T 1wa5_B 339 NAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP 418 (530)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCT
T ss_pred HcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcH
Confidence 78888877653322111 11111112 23445566789999999999999999999999999999763 3
Q ss_pred ccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940 311 DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 311 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 352 (548)
+..+.+.+.|+++.|+.++.++++.++..++++|.++.....
T Consensus 419 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 419 DIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 455677789999999999999999999999999999987643
No 16
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=5.7e-30 Score=258.55 Aligned_cols=304 Identities=20% Similarity=0.252 Sum_probs=245.2
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 118 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 118 (548)
.++.|+++|++++++++..|+.+|.+++.+++.++..+.+.|+++.|+++|++++++++..|+++|++|+.++++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 57899999999999999999999999998777788899999999999999999999999999999999999889999999
Q ss_pred HhcCChHHHHHhhh-cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhh--------CC--------CCHHHH
Q 008940 119 LAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML--------QS--------PDVQLR 181 (548)
Q Consensus 119 ~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll--------~~--------~~~~v~ 181 (548)
++.|++|.|+++|. ++++++++.++|+|+|++.+ +.++..+++ |++|.|+.++ .+ .++.+.
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 99999999999999 78899999999999999977 788888888 9999999999 32 245677
Q ss_pred HHHHHHHHHhhcCCcchhhhHhc-CChHHHHHhhcC------CChhHHHHHHHHHHhcccCCc-----chHHHHHhcCcc
Q 008940 182 EMSAFALGRLAQDMHNQAGIAHN-GGLVPLLKLLDS------KNGSLQHNAAFALYGLADNED-----NVADFIRVGGVQ 249 (548)
Q Consensus 182 ~~a~~~L~~l~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~g~i~ 249 (548)
..|+++|+||+.+++++..+.+. |+++.|+.++.+ .+..+.+.++.+|.+++...+ ....+ ... +.
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~-~~~-~~ 238 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL-EYN-AR 238 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH-HHT-C-
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc-ccc-cc
Confidence 79999999999887778888887 999999999986 456788899999999974311 11110 000 00
Q ss_pred cccccchhhhhhhHHHHH-------------------HHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCC
Q 008940 250 KLQDGEFIVQATKDCVAK-------------------TLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSP 309 (548)
Q Consensus 250 ~L~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~ 309 (548)
..+.......|... ..+..+.+++.++++.|+.+|.+ +++.+++.|+|+|.|++.+
T Consensus 239 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~ 314 (457)
T 1xm9_A 239 ----NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314 (457)
T ss_dssp -------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred ----cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence 00000000011100 01123456788899999999988 5689999999999999976
Q ss_pred Ccc------ceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 310 DDQ------RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 310 ~~~------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
... +..+.+.|++|.|+++|.+++.++++.|+++|.|++.+
T Consensus 315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 532 33455789999999999999999999999999999875
No 17
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.97 E-value=2.6e-30 Score=225.16 Aligned_cols=150 Identities=33% Similarity=0.490 Sum_probs=137.9
Q ss_pred cchHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccch
Q 008940 369 YLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTL 448 (548)
Q Consensus 369 ~~~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~ 448 (548)
.....++.++.++|+++.++|+.|+|||.||+++|+||++||.+++.|+.+..|.++++++++|+.+|+|+|||+++++.
T Consensus 23 ~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~ 102 (172)
T 3htm_A 23 DELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD 102 (172)
T ss_dssp HHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGG
T ss_pred HHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcch
Q 008940 449 DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPG 518 (548)
Q Consensus 449 ~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~ 518 (548)
+++.+++.+|++|+++.|++.|+++|.+.++.+||+.++.+|..|+++.|++.|.+||.+||.++.++++
T Consensus 103 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~~ 172 (172)
T 3htm_A 103 KMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 172 (172)
T ss_dssp GTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988764
No 18
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.97 E-value=3.1e-30 Score=242.55 Aligned_cols=160 Identities=23% Similarity=0.403 Sum_probs=144.2
Q ss_pred hHhhhcCCCCccEEEEeC---CeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecC------CCCHHHHHHHHHHHhc
Q 008940 371 GDQFVNNATLSDVTFLVE---GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP------NIRWEVFELMMRFIYT 441 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~---~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~------~~~~~~~~~~l~~~Yt 441 (548)
.+.++.++.+|||++.++ |+.|+|||.||+++|+||++||.++++|+.+..|.++ ++++++|+.+++|+||
T Consensus 23 l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Yt 102 (279)
T 3i3n_A 23 QNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYT 102 (279)
T ss_dssp HHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCc
Confidence 466889999999999998 8999999999999999999999999999999999998 8999999999999999
Q ss_pred CccccchHhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHh
Q 008940 442 GSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSN 521 (548)
Q Consensus 442 ~~~~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~ 521 (548)
|++.++.+++.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|+++.|.+.|..||.+||.++.++++|.+
T Consensus 103 g~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~ 182 (279)
T 3i3n_A 103 GRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYT 182 (279)
T ss_dssp SEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGG
T ss_pred CCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhcHHHH
Q 008940 522 LIQRIIPEI 530 (548)
Q Consensus 522 l~~~~~~~~ 530 (548)
|+.+.+.++
T Consensus 183 L~~~~l~~l 191 (279)
T 3i3n_A 183 LPFHLIRDW 191 (279)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 977654443
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=5.7e-29 Score=252.68 Aligned_cols=309 Identities=21% Similarity=0.265 Sum_probs=270.5
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 88 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 88 (548)
.++++..|+++|.+++..+++....+.+.|+++.|+++++++++.+|..|+++|++++..+++.+..+.+.|+++.|+.+
T Consensus 78 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 157 (450)
T 2jdq_A 78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL 157 (450)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence 57899999999999998777888888889999999999999999999999999999998777889999999999999999
Q ss_pred hcc-CChHHHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 89 LRS-EDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 89 l~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
+.+ ++..++..++++|++++.+. +..+..+. .++++.|+.++.+.++.++..++|+|.+++...+.....+.+.|++
T Consensus 158 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 236 (450)
T 2jdq_A 158 FSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 236 (450)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTH
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcH
Confidence 995 78999999999999999764 33222222 7899999999999999999999999999998777777788889999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC-cchHHHHH
Q 008940 167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADFIR 244 (548)
Q Consensus 167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~ 244 (548)
+.|+.++.++++.++..++++|++++...+. ...+.+.|+++.|+.++.++++.++..++++|++++... +....
T Consensus 237 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~--- 313 (450)
T 2jdq_A 237 RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQT--- 313 (450)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH---
T ss_pred HHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH---
Confidence 9999999999999999999999999987654 345677799999999999999999999999999998643 22222
Q ss_pred hcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC--CccceeeecCCch
Q 008940 245 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGL 322 (548)
Q Consensus 245 ~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~--~~~~~~~~~~~~i 322 (548)
+.+.++++.++.++.++++.+|..|+++|++++.. ++..+.+.+.|++
T Consensus 314 ------------------------------~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i 363 (450)
T 2jdq_A 314 ------------------------------VIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCI 363 (450)
T ss_dssp ------------------------------HHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCH
T ss_pred ------------------------------HHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence 34456899999999999999999999999999863 4455667788999
Q ss_pred HHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 323 ELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 323 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
+.|++++.+++++++..++++|.+++...
T Consensus 364 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 364 KPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998753
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.96 E-value=1e-28 Score=255.68 Aligned_cols=342 Identities=16% Similarity=0.194 Sum_probs=290.3
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 88 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 88 (548)
++.++..|+++|.+++..+++.+..+.+.|+++.|+++|+++++.++..|+++|++++..++..+..+...|+++.|+.+
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l 223 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 223 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH
Confidence 67899999999999998788888889999999999999999999999999999999998778899999999999999999
Q ss_pred hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940 89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 168 (548)
Q Consensus 89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~ 168 (548)
+.+++..++..++++|++|+.+...........++++.|+.++.+.++.++..++++|.+++...+.....+.+.|+++.
T Consensus 224 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~ 303 (530)
T 1wa5_B 224 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 303 (530)
T ss_dssp GGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHH
Confidence 99999999999999999999765222344556789999999999999999999999999999887777788888999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-CcchHHHHHhc
Q 008940 169 LIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVG 246 (548)
Q Consensus 169 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~g 246 (548)
|+.++.++++.++..++++|++++...+. ...+.+.|+++.|+.+|.++++.++..|+++|++++.. ++....+.+.|
T Consensus 304 Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~ 383 (530)
T 1wa5_B 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN 383 (530)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 99999999999999999999999976544 45567789999999999999999999999999999864 45566777889
Q ss_pred Ccccccccchhhhhh-hHHHHHHH-----------HHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc---
Q 008940 247 GVQKLQDGEFIVQAT-KDCVAKTL-----------KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--- 311 (548)
Q Consensus 247 ~i~~L~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~--- 311 (548)
+++.|+......... ......++ +....+.+.++++.|+.++.+.++.++..++++|.+++...+
T Consensus 384 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~ 463 (530)
T 1wa5_B 384 LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 463 (530)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 999887643221111 11111111 344455677899999999999999999999999999975322
Q ss_pred ---------cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 312 ---------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 312 ---------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
....+.+.|+++.|..++.+++++++..|..+|.++...
T Consensus 464 ~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 464 EARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred hcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 235677889999999999999999999999999988764
No 21
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=4e-29 Score=253.04 Aligned_cols=305 Identities=17% Similarity=0.225 Sum_probs=245.1
Q ss_pred HhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcC-Chh
Q 008940 35 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-SPN 113 (548)
Q Consensus 35 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~-~~~ 113 (548)
.+.+.++.|+++|.++++.++..|+++|.+++.++++++..+.+.|+++.|+.+|.+++.++++.|+++|+||+.+ +++
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 3568899999999999999999999999999988899999999999999999999999999999999999999985 688
Q ss_pred HHHHHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC------------------
Q 008940 114 IKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ------------------ 174 (548)
Q Consensus 114 ~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~------------------ 174 (548)
++..+.+.|+||.|+++|.+ .+.++++.++++|++|+. ++.++..+++ ++++.|+.++.
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999997 568899999999999986 5788888885 56999999871
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCC-hHHHHHhhcC------CChhHHHHHHHHHHhcccCCcc----hHHH
Q 008940 175 SPDVQLREMSAFALGRLAQDMHN-QAGIAHNGG-LVPLLKLLDS------KNGSLQHNAAFALYGLADNEDN----VADF 242 (548)
Q Consensus 175 ~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~-l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~----~~~~ 242 (548)
.+++.+++.|+++|.||+...+. +..+++.++ ++.|+.++++ .+...+++|+++|.||+...+. ...+
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~ 282 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY 282 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence 23679999999999999987754 888887666 4679999874 4567899999999999865210 0001
Q ss_pred HHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCCC-----ccceee
Q 008940 243 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPD-----DQRTIF 316 (548)
Q Consensus 243 ~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~-----~~~~~~ 316 (548)
.+.. + .. ... . .....+.++.+++.++++.|+.+|.. .++.++++|+++|.||+.+. ..+..+
T Consensus 283 ~~~~--~---~~--~~~---~-~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v 351 (584)
T 3l6x_A 283 QEAA--P---NV--ANN---T-GTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSAL 351 (584)
T ss_dssp ------------------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred hhhc--c---cc--ccc---c-cccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHH
Confidence 1000 0 00 000 0 00000112334566789999999975 67999999999999998754 234566
Q ss_pred ecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940 317 IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 317 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 352 (548)
.+.++++.|++||.++++.++..|+++|.||+.+..
T Consensus 352 ~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 352 RQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp TSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh
Confidence 778999999999999999999999999999998654
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.96 E-value=5.5e-29 Score=258.28 Aligned_cols=334 Identities=19% Similarity=0.196 Sum_probs=278.6
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 88 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 88 (548)
.++++..|+.+|.+++. +++++..+.+.|+++.|+++++++++.++..|+++|.+++..++..+..+.+.|+++.|+.+
T Consensus 73 ~~~~~~~a~~~L~~ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 151 (529)
T 1jdh_A 73 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151 (529)
T ss_dssp CHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHc-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHH
Confidence 56899999999999995 57799999999999999999999999999999999999998767888889999999999999
Q ss_pred hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChH-HHHHHHHHHHHhhcCCchhHHHHHhcCChH
Q 008940 89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE-SQREAALLLGQFAATDSDCKVHIVQRGAVR 167 (548)
Q Consensus 89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~ 167 (548)
+.+++++++..++.+|.+++.++++.+..+.+.|+++.+++++.+.+++ .+..++.+|.+++. ++.++..+.+.|+++
T Consensus 152 l~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~ 230 (529)
T 1jdh_A 152 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQ 230 (529)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHH
Confidence 9999999999999999999998899999999999999999999887654 55667889999985 577888899999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC-cchHHHHHhc
Q 008940 168 PLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADFIRVG 246 (548)
Q Consensus 168 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~g 246 (548)
.|+.++.++++.++..++++|.+++....... ...++++.|++++.+++++++..++++|++++.+. +.+..+.+.|
T Consensus 231 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 308 (529)
T 1jdh_A 231 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 308 (529)
T ss_dssp HHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence 99999999999999999999999997764432 23467899999999999999999999999998864 5888888999
Q ss_pred CcccccccchhhhhhhHH---HHHHHH-----------HHHHhhhhhhhHHHHHHHHhhh-hhhhhhHHHHhhhccCCCc
Q 008940 247 GVQKLQDGEFIVQATKDC---VAKTLK-----------RLEEKIHGRVLNHLLYLMRVAE-KGVQRRVALALAHLCSPDD 311 (548)
Q Consensus 247 ~i~~L~~~~~~~~~~~~~---~~~~~~-----------~~~~~~~~~~~~~L~~ll~~~~-~~~~~~a~~aL~~l~~~~~ 311 (548)
+++.|++........... ...++. ....+.+.++++.|+.+|.+++ +.++..++++|+|++.++.
T Consensus 309 ~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~ 388 (529)
T 1jdh_A 309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 388 (529)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh
Confidence 999887644321111111 112222 1235567789999999999876 5999999999999999888
Q ss_pred cceeeecCCchHHHHHhhcCCCCccchhhHHHHHH
Q 008940 312 QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 346 (548)
Q Consensus 312 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 346 (548)
.+..+.+.|+++.|++++.++++++|..|+|++.|
T Consensus 389 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 389 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423 (529)
T ss_dssp GHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence 88888999999999999999899999999999888
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=1.9e-28 Score=248.84 Aligned_cols=309 Identities=19% Similarity=0.233 Sum_probs=267.1
Q ss_pred hhhHHHHHHHHHHHHHhh--hChhhHHHHHhc-CCchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChH
Q 008940 8 AVNSVIRRAADAITNLAH--ENSSIKTRVRME-GGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALP 83 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~--~~~~~~~~i~~~-g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 83 (548)
..++++..|+..|..+.. .++..+. +.+. |+++.|+++|+++ ++.+|..|+++|.+++.+++++...+.+.|+++
T Consensus 32 ~~~~~r~~A~~~L~~l~~~~~~~~~~~-~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 110 (450)
T 2jdq_A 32 KSPEQQLSATQKFRKLLSKEPNPPIDE-VISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVP 110 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSSCCHHH-HHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHH-HHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHH
Confidence 456889999999999863 3445444 5556 9999999999998 899999999999999987788888888999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCC-chhHHHHH
Q 008940 84 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATD-SDCKVHIV 161 (548)
Q Consensus 84 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~ 161 (548)
.|+.++.++++++++.|+++|++++.+++..+..+.+.|+++.++.++.+ .+.+++..++++|++++.+. +.......
T Consensus 111 ~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 190 (450)
T 2jdq_A 111 IFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV 190 (450)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 99999999999999999999999999988899999999999999999996 67999999999999999764 33322233
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-cchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchH
Q 008940 162 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA 240 (548)
Q Consensus 162 ~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 240 (548)
.++++.|+.++.++++.++..++++|.+++... +....+...|+++.|+.++.++++.++..++++|++++...+...
T Consensus 191 -~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 269 (450)
T 2jdq_A 191 -SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 269 (450)
T ss_dssp -GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHH
Confidence 789999999999999999999999999999865 345667788999999999999999999999999999997654322
Q ss_pred HHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC-ccceeeecC
Q 008940 241 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDG 319 (548)
Q Consensus 241 ~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~ 319 (548)
. .+.+.++++.|+.++.++++.+|..|+++|++++.+. ...+.+.+.
T Consensus 270 ~--------------------------------~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~ 317 (450)
T 2jdq_A 270 Q--------------------------------VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDA 317 (450)
T ss_dssp H--------------------------------HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred H--------------------------------HHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 1 2344568899999999999999999999999999754 455667778
Q ss_pred CchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 320 GGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 320 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
|+++.|++++.++++.+|..|+++|.+++.+
T Consensus 318 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 318 NIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999875
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=1.6e-28 Score=254.32 Aligned_cols=340 Identities=18% Similarity=0.186 Sum_probs=289.5
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 89 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll 89 (548)
+.++..|+++|.+++.++++.+..+.+.|+++.|+.+|+++++.++..|+++|++++..++..+..+...|+++.|+.++
T Consensus 132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL 211 (528)
T 4b8j_A 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL 211 (528)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHH
Confidence 78999999999999988899999999999999999999999999999999999999987788899999999999999999
Q ss_pred -ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940 90 -RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 168 (548)
Q Consensus 90 -~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~ 168 (548)
.+.+..++..++++|++|+...+.. ......|+++.|+.++.+.+++++..++++|.+++...+.....+.+.|+++.
T Consensus 212 ~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~ 290 (528)
T 4b8j_A 212 NEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 290 (528)
T ss_dssp CTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHH
Confidence 5778999999999999999875443 33445899999999999999999999999999999877766678889999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCC-ChhHHHHHHHHHHhcccC-CcchHHHHHh
Q 008940 169 LIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADN-EDNVADFIRV 245 (548)
Q Consensus 169 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~-~~~~~~~~~~ 245 (548)
|+.+|.++++.++..|+++|++++...+. ...+.+.|+++.|+.+|.++ ++.++..|+++|++++.. ++....+.+.
T Consensus 291 Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~ 370 (528)
T 4b8j_A 291 LVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINA 370 (528)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHC
Confidence 99999999999999999999999986544 55677889999999999998 999999999999999874 4456677788
Q ss_pred cCcccccccchhhhhh-hHHHHHH---------HHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc----
Q 008940 246 GGVQKLQDGEFIVQAT-KDCVAKT---------LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD---- 311 (548)
Q Consensus 246 g~i~~L~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~---- 311 (548)
|+++.|+......... ......+ .+....+.+.++++.|+.++.+.++.++..++++|.+++...+
T Consensus 371 ~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~ 450 (528)
T 4b8j_A 371 GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKT 450 (528)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999887643322111 1111111 3444555678999999999999999999999999999975321
Q ss_pred --------cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 312 --------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 312 --------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
....+.+.|+++.|..+..+.+++++..|...+.++...
T Consensus 451 ~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 451 LAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred cccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 356778889999999999999999999999999888764
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.96 E-value=3.8e-28 Score=251.94 Aligned_cols=340 Identities=21% Similarity=0.233 Sum_probs=283.3
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 87 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 87 (548)
..++++..|+++|.+++..++..+..+.+.|+++.|++++++++++++..++.+|.+++.++++++..+.+.|+++.|+.
T Consensus 113 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ 192 (529)
T 1jdh_A 113 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 192 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 34789999999999999887888888889999999999999999999999999999999888999999999999999999
Q ss_pred HhccCC-hHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh----------------------------------
Q 008940 88 MLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---------------------------------- 132 (548)
Q Consensus 88 ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~---------------------------------- 132 (548)
++++++ ...+..++.+|++++.. ++.+..+.+.|+++.|+.++.
T Consensus 193 ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L 271 (529)
T 1jdh_A 193 IMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTL 271 (529)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHH
Confidence 998654 45667788999999864 666777777777766665554
Q ss_pred -----cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCc----chhhh
Q 008940 133 -----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMH----NQAGI 201 (548)
Q Consensus 133 -----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~----~~~~~ 201 (548)
+.+++++..++++|++++..++..+..+.+.|+++.|+.++.+ +++.++..++++|+|++...+ .+..+
T Consensus 272 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i 351 (529)
T 1jdh_A 272 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 351 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 4566777888888888887777788889999999999999975 347999999999999997643 25678
Q ss_pred HhcCChHHHHHhhcCCC-hhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhh----hh---------------
Q 008940 202 AHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ----AT--------------- 261 (548)
Q Consensus 202 ~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~----~~--------------- 261 (548)
.+.|+++.|++++.+++ +.++..++++|+|++.++..+..+.+.|+++.|++...... ..
T Consensus 352 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~ 431 (529)
T 1jdh_A 352 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431 (529)
T ss_dssp HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBC
T ss_pred HHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcccc
Confidence 88999999999999876 58999999999999998888888999999998766322111 00
Q ss_pred -hH---HHHHHH-------HHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhc
Q 008940 262 -KD---CVAKTL-------KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG 330 (548)
Q Consensus 262 -~~---~~~~~~-------~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~ 330 (548)
.. ....++ ++...+.+.++++.|+.++.++++.++..++++|.+++..++.+..+.+.|+++.|.+++.
T Consensus 432 ~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~ 511 (529)
T 1jdh_A 432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH 511 (529)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhc
Confidence 00 111111 2234467788999999999999999999999999999987778888899999999999999
Q ss_pred CCCCccchhhHHHHHHHh
Q 008940 331 STNPKQQLDGAVALFKLA 348 (548)
Q Consensus 331 ~~~~~v~~~a~~~L~~l~ 348 (548)
+++++++..|.++|.+|+
T Consensus 512 ~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 512 SRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp CSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999999873
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.96 E-value=5.7e-28 Score=255.67 Aligned_cols=343 Identities=21% Similarity=0.233 Sum_probs=287.6
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 87 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 87 (548)
..+.++..|+.+|.+++..++..+..+.+.|+++.|+++|+++++.++..++.+|.+++.++++++..+.+.|+++.|+.
T Consensus 110 ~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~ 189 (644)
T 2z6h_A 110 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 189 (644)
T ss_dssp SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHH
Confidence 35789999999999999877788888889999999999999999999999999999999878999999999999999999
Q ss_pred HhccCC-hHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh----------------------------------
Q 008940 88 MLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---------------------------------- 132 (548)
Q Consensus 88 ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~---------------------------------- 132 (548)
++++.+ ..++..++.+|++++. ++..+..+.+.|+++.|+.++.
T Consensus 190 lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~L 268 (644)
T 2z6h_A 190 IMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTL 268 (644)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHH
Confidence 998664 6778899999999985 4677888888887777766554
Q ss_pred -----cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCc----chhhh
Q 008940 133 -----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMH----NQAGI 201 (548)
Q Consensus 133 -----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~----~~~~~ 201 (548)
+.+++++..++++|.+++..++.++..+.+.|+++.|+.++.+. .+.++..++++|++++.... .+..+
T Consensus 269 v~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v 348 (644)
T 2z6h_A 269 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 348 (644)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 45667778888888888877777888889999999999999863 37999999999999996533 24557
Q ss_pred HhcCChHHHHHhhcCCC-hhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhh----h----------------
Q 008940 202 AHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ----A---------------- 260 (548)
Q Consensus 202 ~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~----~---------------- 260 (548)
.+.|+++.|+++|.+.+ +.++..++++|+|++.++.++..+.+.|+++.|+....... .
T Consensus 349 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~ 428 (644)
T 2z6h_A 349 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 428 (644)
T ss_dssp HHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSC
T ss_pred HHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccccc
Confidence 78899999999999875 68999999999999998888888999999998876332211 0
Q ss_pred hhH---HHHHHH-------HHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhc
Q 008940 261 TKD---CVAKTL-------KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG 330 (548)
Q Consensus 261 ~~~---~~~~~~-------~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~ 330 (548)
... ....++ .+...+.+.++++.|+.++.+.++.++..|+++|.+++..++.+..+.+.|+++.|..++.
T Consensus 429 ~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~ 508 (644)
T 2z6h_A 429 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH 508 (644)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHc
Confidence 000 111122 2223556789999999999999999999999999999988778888899999999999999
Q ss_pred CCCCccchhhHHHHHHHhhhc
Q 008940 331 STNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 331 ~~~~~v~~~a~~~L~~l~~~~ 351 (548)
++++++|..|+++|.+++.+.
T Consensus 509 ~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 509 SRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp CSCHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999998864
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.96 E-value=1.2e-27 Score=256.83 Aligned_cols=342 Identities=20% Similarity=0.199 Sum_probs=279.4
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 88 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 88 (548)
.+++++.|+.+|.+++. +++++..+.+.|+++.|+++|+++++.++..|+++|.+++..++..+..+.+.|+++.|+.+
T Consensus 206 d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~l 284 (780)
T 2z6g_A 206 DVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284 (780)
T ss_dssp CHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHH
Confidence 57899999999999994 57778889999999999999999999999999999999998777888888899999999999
Q ss_pred hccCChHHHHHHHHHHHHhhcCChhHH------------------------------------------HHHHhcCChHH
Q 008940 89 LRSEDSAIHYEAVGVIGNLVHSSPNIK------------------------------------------KEVLAAGALQP 126 (548)
Q Consensus 89 l~~~~~~v~~~a~~~L~~l~~~~~~~~------------------------------------------~~~~~~g~i~~ 126 (548)
+.+++..++..++.+|.+++..+++.+ ..+++.|+++.
T Consensus 285 L~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~ 364 (780)
T 2z6g_A 285 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 364 (780)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHH
Confidence 999888888888888887776543333 33334444444
Q ss_pred HHH---------------------------------------hhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChH
Q 008940 127 VIG---------------------------------------LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 167 (548)
Q Consensus 127 L~~---------------------------------------ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~ 167 (548)
|+. ++.+.+++++..|+++|++++..++..+..+.+.|+++
T Consensus 365 Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~ 444 (780)
T 2z6g_A 365 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 444 (780)
T ss_dssp HGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHH
T ss_pred HHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence 433 34445667788888888898887778888888999999
Q ss_pred HHHHhhCC-CC-HHHHHHHHHHHHHhhcCCcc----hhhhHhcCChHHHHHhhcCCCh-hHHHHHHHHHHhcccCCcchH
Q 008940 168 PLIEMLQS-PD-VQLREMSAFALGRLAQDMHN----QAGIAHNGGLVPLLKLLDSKNG-SLQHNAAFALYGLADNEDNVA 240 (548)
Q Consensus 168 ~L~~ll~~-~~-~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~l~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~ 240 (548)
.|+.+|.+ ++ +.++..|+++|++|+..... +..+...|+++.|+++|.+++. .++..++++|+|++.++.++.
T Consensus 445 ~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~ 524 (780)
T 2z6g_A 445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 524 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999986 33 48999999999999865432 4577888999999999998774 999999999999999888888
Q ss_pred HHHHhcCcccccccchhhh----h-------------------hhHHHHHHHHH-------HHHhhhhhhhHHHHHHHHh
Q 008940 241 DFIRVGGVQKLQDGEFIVQ----A-------------------TKDCVAKTLKR-------LEEKIHGRVLNHLLYLMRV 290 (548)
Q Consensus 241 ~~~~~g~i~~L~~~~~~~~----~-------------------~~~~~~~~~~~-------~~~~~~~~~~~~L~~ll~~ 290 (548)
.+.+.|+++.|+....... . .......++.+ ...+.+.++++.|+.++.+
T Consensus 525 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~ 604 (780)
T 2z6g_A 525 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYS 604 (780)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGC
T ss_pred HHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcC
Confidence 8889999888766332211 0 00111222222 2345678999999999999
Q ss_pred hhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 291 AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 291 ~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
+++.++..|+.+|.+++..++.+..+.+.|+++.|.+++.++++.+|..|+++|.+++.+.
T Consensus 605 ~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 605 PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999988888888999999999999999999999999999999999864
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.96 E-value=7.3e-28 Score=254.85 Aligned_cols=334 Identities=19% Similarity=0.194 Sum_probs=279.4
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 88 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 88 (548)
.++++..|+.+|.+++. +++++..+.+.|+++.|+++|+++++.++..|+++|.+++..++..+..+.+.|+++.|+.+
T Consensus 70 ~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l 148 (644)
T 2z6h_A 70 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148 (644)
T ss_dssp CHHHHHHHHHHHHHHTT-SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH
Confidence 57899999999999995 56789999999999999999999999999999999999998767888888899999999999
Q ss_pred hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCCchhHHHHHhcCChH
Q 008940 89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVR 167 (548)
Q Consensus 89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~ 167 (548)
|.++++.++..++.+|.+++..+++.+..+.+.|+++.|++++.+.+ ..++..++.+|.+++. ++.++..+++.|+++
T Consensus 149 L~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~ 227 (644)
T 2z6h_A 149 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQ 227 (644)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHH
T ss_pred HCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHH
Confidence 99999999999999999999888899999999999999999998866 5677889999999985 578889999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-CcchHHHHHhc
Q 008940 168 PLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVG 246 (548)
Q Consensus 168 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~g 246 (548)
.|+.++.++++.++..++++|.+++....... ...++++.|+.++.+.+++++..++++|++|+.+ ++++..+.+.|
T Consensus 228 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~--~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g 305 (644)
T 2z6h_A 228 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 305 (644)
T ss_dssp HHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCC--SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcchhhh--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 99999999999999999999999997654322 2236789999999999999999999999999885 46778888999
Q ss_pred Ccccccccchhhhh---hhHHHHHHHHHH-----------HHhhhhhhhHHHHHHHHhhh-hhhhhhHHHHhhhccCCCc
Q 008940 247 GVQKLQDGEFIVQA---TKDCVAKTLKRL-----------EEKIHGRVLNHLLYLMRVAE-KGVQRRVALALAHLCSPDD 311 (548)
Q Consensus 247 ~i~~L~~~~~~~~~---~~~~~~~~~~~~-----------~~~~~~~~~~~L~~ll~~~~-~~~~~~a~~aL~~l~~~~~ 311 (548)
+++.|+........ ...-...++.++ ..+.+.++++.|+.+|.+.+ +.++..|+++|+|++.++.
T Consensus 306 ~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~ 385 (644)
T 2z6h_A 306 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 385 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH
Confidence 99988764432211 111112222222 22556789999999999864 6999999999999999888
Q ss_pred cceeeecCCchHHHHHhhcCCCCccchhhHHHHHH
Q 008940 312 QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 346 (548)
Q Consensus 312 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 346 (548)
.+..+.+.|+++.|++++.+++.++|+.|+|++.+
T Consensus 386 ~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n 420 (644)
T 2z6h_A 386 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 420 (644)
T ss_dssp GHHHHHHTTHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHcCCHHHHHHHHhccchhhhhHhhhcccc
Confidence 88888999999999999998888888888887665
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=1.4e-26 Score=215.63 Aligned_cols=241 Identities=28% Similarity=0.368 Sum_probs=220.3
Q ss_pred CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 117 (548)
Q Consensus 38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 117 (548)
|+++.|+++|++++++++..|+++|.+++..+++++..+.+.|+++.|++++.+++++++..++++|++++.++++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67899999999999999999999999999877789999999999999999999999999999999999999988999999
Q ss_pred HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940 118 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 197 (548)
Q Consensus 118 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 197 (548)
+.+.|+++.++.++.+++++++..++++|.+++..++..+..+.+.|+++.|+.+++++++.++..++++|++++...+.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999986654
Q ss_pred -hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCc-chHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHh
Q 008940 198 -QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED-NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 275 (548)
Q Consensus 198 -~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~ 275 (548)
+..+.+.|+++.|+.++.++++.++..++++|++++...+ .... +
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~---------------------------------l 208 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKA---------------------------------I 208 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHH---------------------------------H
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH---------------------------------H
Confidence 4678889999999999999999999999999999997433 3333 3
Q ss_pred hhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc
Q 008940 276 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 311 (548)
Q Consensus 276 ~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~ 311 (548)
.+.|+++.|+.+++++++.++..|+++|.+++....
T Consensus 209 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 209 VDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 455688999999999999999999999999986544
No 30
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.95 E-value=3.1e-27 Score=226.14 Aligned_cols=148 Identities=34% Similarity=0.509 Sum_probs=131.8
Q ss_pred hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHh
Q 008940 371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI 450 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~ 450 (548)
...++.++.++|+++.++|+.|+|||.||+++||||++||.++++|+....|.++++++++|+.+|+|+|||+++++.++
T Consensus 165 l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~ 244 (312)
T 3hqi_A 165 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKM 244 (312)
T ss_dssp HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHH
T ss_pred HHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcch
Q 008940 451 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPG 518 (548)
Q Consensus 451 ~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~ 518 (548)
+.+|+.+|++|+++.|+..|+++|.+.++.+||..++.+|+.|++..|++.|++||.+||.++.++++
T Consensus 245 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~g 312 (312)
T 3hqi_A 245 ADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 312 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988763
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=5e-26 Score=211.92 Aligned_cols=228 Identities=25% Similarity=0.339 Sum_probs=209.1
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
+.+++++..|+++|.++...+++.+..+.+.|+++.|+++|+++++.++..|+++|++++.++++++..+.+.|+++.|+
T Consensus 23 s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 102 (252)
T 4db8_A 23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 102 (252)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Confidence 34578999999999776655777888899999999999999999999999999999999988899999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
.+|+++++.++..|+++|++++.+.+.....+.+.|+++.|++++.++++.++..++++|++++..++.....+.+.|++
T Consensus 103 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 182 (252)
T 4db8_A 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 182 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred HHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCH
Confidence 99999999999999999999998766655889999999999999999999999999999999998888888888999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCC-cchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940 167 RPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 234 (548)
+.|+.++.++++.++..++++|++++... ..+..+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus 183 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 183 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999654 446678888999999999999999999999999999985
No 32
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=1e-25 Score=209.77 Aligned_cols=229 Identities=30% Similarity=0.387 Sum_probs=214.7
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 88 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 88 (548)
.++++..|+++|.+++..+++.+..+.+.|+++.|+++++++++.++..|+++|.+++.++++++..+.+.|+++.|+.+
T Consensus 15 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 94 (252)
T 4hxt_A 15 DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 94 (252)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence 47899999999999998888899999999999999999999999999999999999998779999999999999999999
Q ss_pred hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940 89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 168 (548)
Q Consensus 89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~ 168 (548)
+.+++++++..++++|++++..+++.+..+.+.|+++.+++++.+++++++..++++|++++...+.....+.+.|+++.
T Consensus 95 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 174 (252)
T 4hxt_A 95 LTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEV 174 (252)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999888888788999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCC-cchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCc
Q 008940 169 LIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 237 (548)
Q Consensus 169 L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 237 (548)
|+.++.++++.++..++++|++++... ..+..+.+.|+++.|+++++++++.++..|+++|++++....
T Consensus 175 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 175 LVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999754 446678889999999999999999999999999999987554
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.94 E-value=9.8e-26 Score=242.11 Aligned_cols=340 Identities=20% Similarity=0.212 Sum_probs=279.6
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhc-CCchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
..+.+++.|+.+|.+++. +...+..+.+. |+++.|+++|+++ ++.++..|+.+|.+++. +++++..+.+.|+++.|
T Consensus 162 ~d~~vr~~A~~~L~~L~~-~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~L 239 (780)
T 2z6g_A 162 EDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPAL 239 (780)
T ss_dssp SCHHHHHHHHHHHHHHHT-SHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhC-CChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHH
Confidence 457899999999999995 45566666644 8899999999865 89999999999999997 57888899999999999
Q ss_pred HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940 86 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 165 (548)
Q Consensus 86 v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 165 (548)
+.+|+++++.++..|+++|.+|+.+.+..+..+.+.|+++.|+.++.+.+.+++..++.+|.+++..+++.+..+.+.|+
T Consensus 240 v~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~ 319 (780)
T 2z6g_A 240 VNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 319 (780)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence 99999999999999999999999988888888889999999999999999999999999999999888889999999999
Q ss_pred hHHHHHhhCCCCH-HHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHH
Q 008940 166 VRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 244 (548)
Q Consensus 166 v~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 244 (548)
++.|+.+++++++ ..+..++.+|++|+....++..+.+.|+++.|+.++.+.+..++..++++|.+++....... ..
T Consensus 320 i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~--~~ 397 (780)
T 2z6g_A 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GM 397 (780)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS--CC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh--hh
Confidence 9999999998654 46678899999999988888899999999999999999999999999999999987543211 11
Q ss_pred hcCcccccccchhhh-hhhHHHHHHH--------HHHHHhhhhhhhHHHHHHHHhh-h-hhhhhhHHHHhhhccCCCc--
Q 008940 245 VGGVQKLQDGEFIVQ-ATKDCVAKTL--------KRLEEKIHGRVLNHLLYLMRVA-E-KGVQRRVALALAHLCSPDD-- 311 (548)
Q Consensus 245 ~g~i~~L~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~~~L~~ll~~~-~-~~~~~~a~~aL~~l~~~~~-- 311 (548)
.++++.|+....... ....+...++ .+...+.+.++++.|+.+|.+. + ..++..|+++|++++....
T Consensus 398 ~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~ 477 (780)
T 2z6g_A 398 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA 477 (780)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchH
Confidence 234444433211111 1111222222 3445566788999999999874 3 3899999999999986432
Q ss_pred --cceeeecCCchHHHHHhhcCCCC-ccchhhHHHHHHHhhhc
Q 008940 312 --QRTIFIDGGGLELLLGLLGSTNP-KQQLDGAVALFKLANKA 351 (548)
Q Consensus 312 --~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~ 351 (548)
.+..+.+.++++.|++++.+++. .++..|+++|.|++...
T Consensus 478 ~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~ 520 (780)
T 2z6g_A 478 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 520 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH
Confidence 24567788999999999998876 89999999999998654
No 34
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=7.8e-26 Score=210.60 Aligned_cols=238 Identities=24% Similarity=0.357 Sum_probs=212.5
Q ss_pred CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 117 (548)
Q Consensus 38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 117 (548)
...+.++++|++++++++..|+++|.++...+++++..+.+.|+++.|+++|.+++++++..|+++|++++.++++.+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45788999999999999999999998766656788889999999999999999999999999999999999988999999
Q ss_pred HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-
Q 008940 118 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH- 196 (548)
Q Consensus 118 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~- 196 (548)
+.+.|+++.|+.++.+++++++..++++|.+++...+.....+.+.|+++.|+.+++++++.++..++++|++++...+
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 9999999999999999999999999999999987755544788999999999999999999999999999999998654
Q ss_pred chhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC-cchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHh
Q 008940 197 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 275 (548)
Q Consensus 197 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~ 275 (548)
....+.+.|+++.|+.++.++++.++..++++|++++... +....+
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~--------------------------------- 218 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV--------------------------------- 218 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHH---------------------------------
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHH---------------------------------
Confidence 4566788899999999999999999999999999998643 333333
Q ss_pred hhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccC
Q 008940 276 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 308 (548)
Q Consensus 276 ~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~ 308 (548)
.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus 219 ~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 219 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 345688889999999999999999999999975
No 35
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.94 E-value=2.8e-27 Score=199.64 Aligned_cols=132 Identities=36% Similarity=0.520 Sum_probs=100.7
Q ss_pred cchHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccch
Q 008940 369 YLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTL 448 (548)
Q Consensus 369 ~~~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~ 448 (548)
.....++.++.++|+++.++|+.|+|||.||+++|+||++||.+++.|+.+..|.++++++++|+.+++|+|||+++++.
T Consensus 14 ~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~ 93 (145)
T 4eoz_A 14 DELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD 93 (145)
T ss_dssp HHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGG
T ss_pred HHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcH
Confidence 34567889999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHH
Q 008940 449 DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRH 500 (548)
Q Consensus 449 ~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~ 500 (548)
+++.+++.+|++|+++.|++.|+++|.+.++.+||+.++.+|+.|+++.|++
T Consensus 94 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~Lk~ 145 (145)
T 4eoz_A 94 KMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKT 145 (145)
T ss_dssp GTHHHHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHhcC
Confidence 9999999999999999999999999999999999999999999999998864
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=4.6e-24 Score=192.65 Aligned_cols=199 Identities=26% Similarity=0.372 Sum_probs=186.0
Q ss_pred hcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHH
Q 008940 36 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 115 (548)
Q Consensus 36 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 115 (548)
..|..+.|+.+|+++++.++..|+++|.+++.++++++..+.+.|+++.|+++|.+++++++..|+++|++++.+++..+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 45788999999999999999999999999998789999999999999999999999999999999999999998889999
Q ss_pred HHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-
Q 008940 116 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD- 194 (548)
Q Consensus 116 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~- 194 (548)
..+.+.|+++.|+.++.++++.++..++++|++++.+++.....+.+.|+++.|+.+++++++.++..++++|++++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999988888888889999999999999999999999999999999987
Q ss_pred CcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940 195 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 195 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 234 (548)
.+.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 4557778888999999999999999999999999999975
No 37
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.91 E-value=2.4e-24 Score=171.56 Aligned_cols=104 Identities=29% Similarity=0.551 Sum_probs=94.2
Q ss_pred hhcCCCCccEEEEeCC----eEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchH
Q 008940 374 FVNNATLSDVTFLVEG----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 449 (548)
Q Consensus 374 ~~~~~~~~Dv~~~~~~----~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~ 449 (548)
++.++.+||+++.+++ +.|+|||.||+++|+||++||.++|.|+. ..|.++++++++|+.+++|+|||+++++.+
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~ 80 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD 80 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence 5788999999999998 89999999999999999999999999988 899999999999999999999999999999
Q ss_pred hHHHHHHHHHHhChHhHHHHHHHHHHhcC
Q 008940 450 IAQDLLRAADQYLLEGLKRLCEYTIAQDI 478 (548)
Q Consensus 450 ~~~~ll~~a~~~~~~~l~~~c~~~l~~~l 478 (548)
++.+++.+|++|+++.|++.|+++|.+++
T Consensus 81 ~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 81 TVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998754
No 38
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.91 E-value=6.1e-24 Score=172.26 Aligned_cols=104 Identities=29% Similarity=0.423 Sum_probs=95.8
Q ss_pred hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHh
Q 008940 371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI 450 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~ 450 (548)
.++++.++.++|+++.++|+.|+|||.||+++|+||++||.+++.|+....|.++++++++|+.+++|+|||++.++.++
T Consensus 16 l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~ 95 (120)
T 2if5_A 16 LNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTAN 95 (120)
T ss_dssp HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGG
T ss_pred HHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhChHhHHHHHHHHH
Q 008940 451 AQDLLRAADQYLLEGLKRLCEYTI 474 (548)
Q Consensus 451 ~~~ll~~a~~~~~~~l~~~c~~~l 474 (548)
+.+++.+|++|+++.|++.|+++|
T Consensus 96 ~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 96 VGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHh
Confidence 999999999999999999999987
No 39
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=1.3e-22 Score=183.10 Aligned_cols=187 Identities=24% Similarity=0.331 Sum_probs=178.1
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
+..++++..|+++|.+++..+++.+..+.+.|+++.|+++|+++++.++..|+++|++++.++++++..+.+.|+++.|+
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 102 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 102 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHH
Confidence 44679999999999999988899999999999999999999999999999999999999987889999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
.+|.++++.++..|+++|++++.++++.++.+.+.|+++.|++++.+++++++..++++|.+++..++..+..+.+.|++
T Consensus 103 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i 182 (210)
T 4db6_A 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCH
Confidence 99999999999999999999998888888899999999999999999999999999999999998888889999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940 167 RPLIEMLQSPDVQLREMSAFALGRLAQ 193 (548)
Q Consensus 167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~ 193 (548)
+.|+.++.++++.+++.|+++|.+++.
T Consensus 183 ~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 183 EKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999975
No 40
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.90 E-value=1.6e-23 Score=171.50 Aligned_cols=105 Identities=23% Similarity=0.406 Sum_probs=100.6
Q ss_pred hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceec-CCCCHHHHHHHHHHHhcCccccchH
Q 008940 371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI-PNIRWEVFELMMRFIYTGSVDVTLD 449 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l-~~~~~~~~~~~l~~~Yt~~~~~~~~ 449 (548)
.++++.++.+||+++.++|+.|+|||.||+++|+||++||.+++.| ....|.+ +++++++|+.+++|+|||++.++.+
T Consensus 20 l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~ 98 (127)
T 1r29_A 20 LNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMYTSRLNLREG 98 (127)
T ss_dssp HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTT
T ss_pred HHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHH
Confidence 4567899999999999999999999999999999999999999998 7789999 9999999999999999999999999
Q ss_pred hHHHHHHHHHHhChHhHHHHHHHHHHh
Q 008940 450 IAQDLLRAADQYLLEGLKRLCEYTIAQ 476 (548)
Q Consensus 450 ~~~~ll~~a~~~~~~~l~~~c~~~l~~ 476 (548)
++.+++.+|++|+++.|++.|+++|.+
T Consensus 99 ~~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 99 NIMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999975
No 41
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.89 E-value=8.9e-24 Score=175.42 Aligned_cols=111 Identities=24% Similarity=0.363 Sum_probs=103.6
Q ss_pred hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecC-CCCHHHHHHHHHHHhcCccccchH
Q 008940 371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLD 449 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Yt~~~~~~~~ 449 (548)
.++++.++.+|||++.++|+.|+|||.||+++|+||++||.+++.++ ..|.++ ++++++|+.+|+|+|||++.++.+
T Consensus 27 l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~ 104 (138)
T 2z8h_A 27 LNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPEEVTVKGFEPLIQFAYTAKLILSKD 104 (138)
T ss_dssp HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCTTSCHHHHHHHHHHHHHSCCCCCTT
T ss_pred HHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCCCCCHHHHHHHHHHhcCCCcccCHH
Confidence 45678899999999999999999999999999999999999988764 478885 899999999999999999999999
Q ss_pred hHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhH
Q 008940 450 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENV 483 (548)
Q Consensus 450 ~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~ 483 (548)
++.+++.+|++|+++.|++.|+++|.+.++.+|+
T Consensus 105 ~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sna 138 (138)
T 2z8h_A 105 NVDEVCRCVEFLSVHNIEESCFQFLKFKFLDSTS 138 (138)
T ss_dssp THHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccC
Confidence 9999999999999999999999999999988763
No 42
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.1e-23 Score=210.38 Aligned_cols=309 Identities=16% Similarity=0.141 Sum_probs=247.5
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhcC-CchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcc-----------------
Q 008940 11 SVIRRAADAITNLAHENSSIKTRVRMEG-GIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDE----------------- 71 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g-~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~----------------- 71 (548)
+.++.|++.|..++ -+++.|..+++.. .++.|+++++. .+..+...++.+|.|++...+.
T Consensus 349 ~~~~~AvEgLaYLS-l~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~ 427 (778)
T 3opb_A 349 PKVEMSVEALAYLS-LKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXX 427 (778)
T ss_dssp HHHHHHHHHHHHHT-TSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-----------
T ss_pred cHHHHHHHHHHHHh-CCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccc
Confidence 34899999999999 5677777776664 49999999995 7788999999999999974221
Q ss_pred ---------------------hhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHh
Q 008940 72 ---------------------NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130 (548)
Q Consensus 72 ---------------------~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 130 (548)
++..+.+.|+++.|+.++.++++.+|+.++++|.+|+.+ +++|..+++.|+++.|+.+
T Consensus 428 ~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~l 506 (778)
T 3opb_A 428 XXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEY 506 (778)
T ss_dssp -------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHH
T ss_pred cCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHH
Confidence 355677889999999999999999999999999999865 8889999999999999999
Q ss_pred hhcCChH---HHHHHHHHHHHhhcCCchhHHHHHh---cCChHHHHHhhCC-CCH-------------HHHHHHHHHHHH
Q 008940 131 LSSCCSE---SQREAALLLGQFAATDSDCKVHIVQ---RGAVRPLIEMLQS-PDV-------------QLREMSAFALGR 190 (548)
Q Consensus 131 l~~~~~~---~~~~a~~~L~~l~~~~~~~~~~~~~---~g~v~~L~~ll~~-~~~-------------~v~~~a~~~L~~ 190 (548)
+.+.... .+..|+.+|.+++...... ..+.. .|++++|+.+|.. +.. .-+..|+.+|.|
T Consensus 507 L~s~~~~~~~~k~~AA~ALArLlis~np~-~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTN 585 (778)
T 3opb_A 507 LANKQDIGEPIRILGCRALTRMLIFTNPG-LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTN 585 (778)
T ss_dssp TTCC---CCHHHHHHHHHHHHHHHTSCHH-HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHH
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhcCCHH-HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHH
Confidence 9887644 7899999999998443221 12211 3889999999983 211 126799999999
Q ss_pred hhcCCc-----chhhhHhc-CChHHHHHhhcCCChhHHHHHHHHHHhcccCCcch-HHHHHhcCcccccccchhhhhhhH
Q 008940 191 LAQDMH-----NQAGIAHN-GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-ADFIRVGGVQKLQDGEFIVQATKD 263 (548)
Q Consensus 191 l~~~~~-----~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~g~i~~L~~~~~~~~~~~~ 263 (548)
|+..++ .+..++.. |+++.|..++.+.+..+++.|+++++||+.+++.. ..+...+.
T Consensus 586 LAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~---------------- 649 (778)
T 3opb_A 586 LASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLEN---------------- 649 (778)
T ss_dssp HHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSS----------------
T ss_pred HhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcC----------------
Confidence 998873 26667774 89999999999999999999999999999877653 23311110
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccC-CCccceeeecC-CchHHHHHhhcC--CCCccchh
Q 008940 264 CVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDG-GGLELLLGLLGS--TNPKQQLD 339 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~-~~i~~L~~ll~~--~~~~v~~~ 339 (548)
-...+-++.|+.++++++.++|.+|+++|.+++. .+...+.+++. ++++.+++++.+ ++++++.+
T Consensus 650 -----------~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R 718 (778)
T 3opb_A 650 -----------PQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQR 718 (778)
T ss_dssp -----------HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred -----------chhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHH
Confidence 0011247889999999999999999999999964 55555556665 899999999998 89999999
Q ss_pred hHHHHHHHhh
Q 008940 340 GAVALFKLAN 349 (548)
Q Consensus 340 a~~~L~~l~~ 349 (548)
++.++.||+.
T Consensus 719 ~~~~l~NL~~ 728 (778)
T 3opb_A 719 LLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999999997
No 43
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=7.7e-22 Score=184.83 Aligned_cols=225 Identities=18% Similarity=0.164 Sum_probs=189.3
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHH-hhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 87 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 87 (548)
+.+-+..|+..|..++ .+.++...+...|++++|+. +|+++++.+|..|+++|++++.+++..+..+++.|+++.|+.
T Consensus 53 ~~e~k~~Al~~L~~lv-~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 53 DQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-hChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 3467889999999999 56778888899999999999 999999999999999999999988999999999999999999
Q ss_pred Hhcc-CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 88 MLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 88 ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
+|.+ ++..+++.|+|+|++++.+++...+.+...|+++.|+.++.+++..++..|+|+|.+++.++++.+..+++.|++
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCH
Confidence 9995 588999999999999999888888889999999999999999999999999999999998888899999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcC--ChHHH----HHhhc-CC-ChhHHHHHHHHHHhccc
Q 008940 167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG--GLVPL----LKLLD-SK-NGSLQHNAAFALYGLAD 234 (548)
Q Consensus 167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~l~~L----~~ll~-~~-~~~v~~~a~~~L~~l~~ 234 (548)
+.|+.+|.++++.+++.++.+|++++...+........+ .+..+ .+-++ +. +.++.+.+..++.++-.
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999998743211111111 11111 22223 22 35666677777776654
No 44
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.89 E-value=1.6e-23 Score=169.06 Aligned_cols=102 Identities=25% Similarity=0.363 Sum_probs=95.1
Q ss_pred hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHh
Q 008940 371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI 450 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~ 450 (548)
.++++.++.+||+++.++|+.|+|||.||+++|+||++||.+++ ...|.++++++++|+.+++|+|||+++++.++
T Consensus 15 l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~ 90 (119)
T 3b84_A 15 LNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGN 90 (119)
T ss_dssp HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHH
Confidence 35678899999999999999999999999999999999999876 56899999999999999999999999999999
Q ss_pred HHHHHHHHHHhChHhHHHHHHHHHHh
Q 008940 451 AQDLLRAADQYLLEGLKRLCEYTIAQ 476 (548)
Q Consensus 451 ~~~ll~~a~~~~~~~l~~~c~~~l~~ 476 (548)
+.+++.+|++|+++.|++.|+++|.+
T Consensus 91 v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 91 RDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 45
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=174.17 Aligned_cols=105 Identities=24% Similarity=0.389 Sum_probs=94.5
Q ss_pred hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCC--CCCCceecCCCCHHHHHHHHHHHhcCccccch
Q 008940 371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE--KDARDIEIPNIRWEVFELMMRFIYTGSVDVTL 448 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e--~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~ 448 (548)
.++++.++.+||+++.++|+.|+|||.||+++|+||++||.+++.+ +....|.++++++++|+.+|+|+|||++.++.
T Consensus 38 l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~ 117 (144)
T 2ppi_A 38 LSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNE 117 (144)
T ss_dssp HHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCT
T ss_pred HHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCH
Confidence 4567889999999999999999999999999999999999998875 66779999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhChHhHHHHHHHHHH
Q 008940 449 DIAQDLLRAADQYLLEGLKRLCEYTIA 475 (548)
Q Consensus 449 ~~~~~ll~~a~~~~~~~l~~~c~~~l~ 475 (548)
+++.+++.+|++|+++.|++.|+++|.
T Consensus 118 ~~v~~ll~~A~~l~i~~L~~~C~~~L~ 144 (144)
T 2ppi_A 118 DTIQDVVQAADLLLLTDLKTLCCEFLE 144 (144)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence 999999999999999999999998763
No 46
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.89 E-value=2e-23 Score=172.24 Aligned_cols=107 Identities=24% Similarity=0.330 Sum_probs=93.7
Q ss_pred hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHh
Q 008940 371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI 450 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~ 450 (548)
.++++.++.+|||++.++|+.|+|||.||+++|+||++||.+++ ...|.++++++++|+.+|+|+|||++.++.++
T Consensus 16 l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~ 91 (135)
T 2yy9_A 16 LNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGN 91 (135)
T ss_dssp HHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHH
Confidence 46688999999999999999999999999999999999999876 56899999999999999999999999999999
Q ss_pred HHHHHHHHHHhChHhHHHHHHHHHHhcCCHh
Q 008940 451 AQDLLRAADQYLLEGLKRLCEYTIAQDISLE 481 (548)
Q Consensus 451 ~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~ 481 (548)
+.+++.+|++|+++.|++.|+++|.+.+...
T Consensus 92 v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~ 122 (135)
T 2yy9_A 92 RDQVLLAAKELRVPEAVELCQSFQPQTSVGQ 122 (135)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999998776543
No 47
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.88 E-value=8.8e-23 Score=165.32 Aligned_cols=103 Identities=24% Similarity=0.397 Sum_probs=96.4
Q ss_pred hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHh
Q 008940 371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI 450 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~ 450 (548)
.++++.++.+||+++.++|+.|+|||.||+++|+||++||.++ ...|.++++++++|+.+++|+|||+++++.++
T Consensus 19 l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~ 93 (121)
T 1buo_A 19 ANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTATLQAKAED 93 (121)
T ss_dssp HHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGG
T ss_pred HHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHH
Confidence 4667889999999999999999999999999999999999863 45899999999999999999999999999999
Q ss_pred HHHHHHHHHHhChHhHHHHHHHHHHhcC
Q 008940 451 AQDLLRAADQYLLEGLKRLCEYTIAQDI 478 (548)
Q Consensus 451 ~~~ll~~a~~~~~~~l~~~c~~~l~~~l 478 (548)
+.+++.+|++|+++.|++.|+++|.+.|
T Consensus 94 ~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 94 LDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998643
No 48
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.88 E-value=8.6e-23 Score=164.25 Aligned_cols=101 Identities=22% Similarity=0.381 Sum_probs=94.2
Q ss_pred hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecC--CCCHHHHHHHHHHHhcCccccch
Q 008940 371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP--NIRWEVFELMMRFIYTGSVDVTL 448 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~--~~~~~~~~~~l~~~Yt~~~~~~~ 448 (548)
.++++.++.+||+++.++|+.|+|||.||+++|+||++||.++ .+..|.++ ++++++|+.+++|+|||+++++.
T Consensus 13 l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~ 88 (116)
T 2vpk_A 13 LNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDS 88 (116)
T ss_dssp HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCH
Confidence 3567889999999999999999999999999999999999876 35577777 99999999999999999999999
Q ss_pred HhHHHHHHHHHHhChHhHHHHHHHHHH
Q 008940 449 DIAQDLLRAADQYLLEGLKRLCEYTIA 475 (548)
Q Consensus 449 ~~~~~ll~~a~~~~~~~l~~~c~~~l~ 475 (548)
+++.+++.+|++|+++.|++.|+++|.
T Consensus 89 ~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 89 WNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999999985
No 49
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=5.9e-22 Score=177.23 Aligned_cols=195 Identities=16% Similarity=0.229 Sum_probs=172.0
Q ss_pred CchHHHHhhccCCH--HHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH
Q 008940 39 GIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 116 (548)
Q Consensus 39 ~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 116 (548)
.++.++++|+++++ +++..|+.+|.+++.++++++..+.+.|+++.|+++|.++++++++.|+++|+||+.++++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 57899999999987 8999999999999988899999999999999999999999999999999999999998899999
Q ss_pred HHHhcCChHHHHHhhh-cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC----------------CCCHH
Q 008940 117 EVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----------------SPDVQ 179 (548)
Q Consensus 117 ~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~----------------~~~~~ 179 (548)
.+.+.|+||.|+++|. +.+.++++.++.+|++|+.. +.++..+.+. +++.|+.++. ..++.
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999998 47899999999999999865 6777777764 6899988763 13678
Q ss_pred HHHHHHHHHHHhhcCC-cchhhhHhcCC-hHHHHHhhcCC------ChhHHHHHHHHHHhcccC
Q 008940 180 LREMSAFALGRLAQDM-HNQAGIAHNGG-LVPLLKLLDSK------NGSLQHNAAFALYGLADN 235 (548)
Q Consensus 180 v~~~a~~~L~~l~~~~-~~~~~~~~~~~-l~~L~~ll~~~------~~~v~~~a~~~L~~l~~~ 235 (548)
++++|..+|.||+... +.|..+.+.+| ++.|+.+++.. +...+++++.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999754 77888987754 68899999752 567899999999999864
No 50
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=3e-21 Score=180.79 Aligned_cols=183 Identities=19% Similarity=0.297 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH-HhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHh
Q 008940 52 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130 (548)
Q Consensus 52 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 130 (548)
.+-+..|+..|.+++. +.+++..+.+.|+++.|+. +|.++++.++..|+++|++++.+++.+++.+++.|++|.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3578899999999997 6789999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhc-CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-cchhhhHhcCChH
Q 008940 131 LSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLV 208 (548)
Q Consensus 131 l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~l~ 208 (548)
|++ ++..+++.|+|+|++++.+++.....+.+.|+++.|+.+|+++++.++..|+|+|++++... +.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 986 47889999999999999888888888999999999999999999999999999999999764 4577889999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHhcccC
Q 008940 209 PLLKLLDSKNGSLQHNAAFALYGLADN 235 (548)
Q Consensus 209 ~L~~ll~~~~~~v~~~a~~~L~~l~~~ 235 (548)
.|+.+|.++++.++..++.+|++++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999876
No 51
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.87 E-value=2.1e-22 Score=162.42 Aligned_cols=100 Identities=22% Similarity=0.347 Sum_probs=93.6
Q ss_pred hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHh
Q 008940 371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI 450 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~ 450 (548)
.++++.++.+||+++.++|+.|+|||.||+++|+||++||.+ ....|.++++++++|+.+++|+|||++.++.++
T Consensus 18 l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~-----~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~ 92 (119)
T 2q81_A 18 LNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD-----QKDVVHLDISNAAGLGQVLEFMYTAKLSLSPEN 92 (119)
T ss_dssp HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH-----CCSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC-----CCCEEEeCCCCHHHHHHHHHHHcCCCCccCHHH
Confidence 456788999999999999999999999999999999999986 245788999999999999999999999999999
Q ss_pred HHHHHHHHHHhChHhHHHHHHHHHH
Q 008940 451 AQDLLRAADQYLLEGLKRLCEYTIA 475 (548)
Q Consensus 451 ~~~ll~~a~~~~~~~l~~~c~~~l~ 475 (548)
+.+++.+|++|++++|++.|++++.
T Consensus 93 ~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 93 VDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999999874
No 52
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.87 E-value=3e-21 Score=172.60 Aligned_cols=196 Identities=16% Similarity=0.174 Sum_probs=171.4
Q ss_pred ChHHHHHHhccCCh--HHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940 81 ALPTLILMLRSEDS--AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 158 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 158 (548)
.++.++++|.++++ +++..|++.|.+++..++..+..+.+.|+||.|+++|.++++++++.|+|+|.|++.++++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999998887 8999999999999988899999999999999999999999999999999999999988889999
Q ss_pred HHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhc----------------CCChhH
Q 008940 159 HIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD----------------SKNGSL 221 (548)
Q Consensus 159 ~~~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----------------~~~~~v 221 (548)
.+.+.|++|.|+.+|+ +++.++++.++.+|+||+..+.++..+.+ +++++|++++. ..+.++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 57899999999999999998888888877 46888887663 125689
Q ss_pred HHHHHHHHHhccc-CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhh------hhh
Q 008940 222 QHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA------EKG 294 (548)
Q Consensus 222 ~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~------~~~ 294 (548)
+++|+.+|.||+. +++.++.+.+.+ |.++.|+.+++.. +..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~--------------------------------Gli~~Lv~~l~~~~~~~~~~~k 215 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCD--------------------------------GLIDSLVHYVRGTIADYQPDDK 215 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTST--------------------------------THHHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCC--------------------------------CcHHHHHHHHHhhhhcccchhH
Confidence 9999999999987 457777776553 3677888888873 457
Q ss_pred hhhhHHHHhhhccCC
Q 008940 295 VQRRVALALAHLCSP 309 (548)
Q Consensus 295 ~~~~a~~aL~~l~~~ 309 (548)
.++.+..+|.||+..
T Consensus 216 ~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 216 ATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhh
Confidence 789999999999753
No 53
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.86 E-value=5e-23 Score=168.06 Aligned_cols=102 Identities=24% Similarity=0.388 Sum_probs=95.5
Q ss_pred hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCC-CCHHHHHHHHHHHhcCccccchH
Q 008940 371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPN-IRWEVFELMMRFIYTGSVDVTLD 449 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~-~~~~~~~~~l~~~Yt~~~~~~~~ 449 (548)
.++++.++.+||+++.++|+.|+|||.||+++|+||++||.+++.| ...|.+++ +++++|+.+++|+|||++.++.+
T Consensus 23 l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~ 100 (125)
T 3ohu_A 23 LNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYTAKLLLSRE 100 (125)
T ss_dssp HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTTSEEEECTT
T ss_pred HHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcCCceEECHH
Confidence 4567889999999999999999999999999999999999998877 56899998 99999999999999999999999
Q ss_pred hHHHHHHHHHHhChHhHHHHHHHHH
Q 008940 450 IAQDLLRAADQYLLEGLKRLCEYTI 474 (548)
Q Consensus 450 ~~~~ll~~a~~~~~~~l~~~c~~~l 474 (548)
++.+++.+|++|+++.|++.|+++|
T Consensus 101 ~v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 101 NIREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp THHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 9999999999999999999997653
No 54
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.5e-22 Score=165.99 Aligned_cols=103 Identities=23% Similarity=0.361 Sum_probs=90.0
Q ss_pred hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecC-CCCHHHHHHHHHHHhcCccccchH
Q 008940 371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLD 449 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Yt~~~~~~~~ 449 (548)
.++++.++.+||+++.++|+.|+|||.||+++|+||++||.++ ....|.++ ++++++|+.+++|+|||+++++.+
T Consensus 24 l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~ 99 (129)
T 3ga1_A 24 LNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVG 99 (129)
T ss_dssp HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTT
T ss_pred HHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHHHHHhCCccccCHH
Confidence 4567889999999999999999999999999999999999876 56689996 999999999999999999999999
Q ss_pred hHHHHHHHHHHhChHhHHHHHHHHHHhc
Q 008940 450 IAQDLLRAADQYLLEGLKRLCEYTIAQD 477 (548)
Q Consensus 450 ~~~~ll~~a~~~~~~~l~~~c~~~l~~~ 477 (548)
++.+++.+|++|+++.|++.|+++|.+.
T Consensus 100 ~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 100 DQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp THHHHHHHHHHTTBTTSSCC--------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999864
No 55
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.86 E-value=6.8e-23 Score=166.62 Aligned_cols=103 Identities=23% Similarity=0.379 Sum_probs=93.3
Q ss_pred hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceec-CCCCHHHHHHHHHHHhcCccccchH
Q 008940 371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI-PNIRWEVFELMMRFIYTGSVDVTLD 449 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l-~~~~~~~~~~~l~~~Yt~~~~~~~~ 449 (548)
.++++.++.+||+++.++|+.|+|||.||+++|+||++||.+++.|+ ..|.+ +++++++|+.+|+|+|||+++++.+
T Consensus 20 l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~ 97 (124)
T 2ihc_A 20 LNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLIQFAYTAKLILSKE 97 (124)
T ss_dssp HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHHHHHHHSEEEEETT
T ss_pred HHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHHHHhcCCCcccCHH
Confidence 45678899999999999999999999999999999999999988765 47888 4899999999999999999999999
Q ss_pred hHHHHHHHHHHhChHhHHHHHHHHHH
Q 008940 450 IAQDLLRAADQYLLEGLKRLCEYTIA 475 (548)
Q Consensus 450 ~~~~ll~~a~~~~~~~l~~~c~~~l~ 475 (548)
++.+++.+|++|+++.|++.|+++|.
T Consensus 98 ~v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 98 NVDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp THHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 99999999999999999999998764
No 56
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.5e-21 Score=194.62 Aligned_cols=305 Identities=15% Similarity=0.123 Sum_probs=237.7
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhc-CChHHHHHH
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILM 88 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~l 88 (548)
+.++..|+-+|..+..........+. ...+.+.++|.+++...+..|++.|..++. +++.++.+++. |.++.|+.+
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~l 384 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTM 384 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHH
Confidence 46788888888888743322221121 245667777777776679999999999997 68888888865 669999999
Q ss_pred hcc-CChHHHHHHHHHHHHhhcCChh--------------------------------------HHHHHHhcCChHHHHH
Q 008940 89 LRS-EDSAIHYEAVGVIGNLVHSSPN--------------------------------------IKKEVLAAGALQPVIG 129 (548)
Q Consensus 89 l~~-~~~~v~~~a~~~L~~l~~~~~~--------------------------------------~~~~~~~~g~i~~L~~ 129 (548)
+++ ++..+...++.+|.|++...+. .+..+.+.|++|.|+.
T Consensus 385 lk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~ 464 (778)
T 3opb_A 385 IKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKR 464 (778)
T ss_dssp HTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHH
Confidence 995 7888999999999999874331 3456678899999999
Q ss_pred hhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHH---HHHHHHHHHHHhhcCCcchhhhH---h
Q 008940 130 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ---LREMSAFALGRLAQDMHNQAGIA---H 203 (548)
Q Consensus 130 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~---~ 203 (548)
++.+.++.++..++++|.+++. ++++|..+++.|+++.|+.++.++... .+..|+.+|.++....+....+. -
T Consensus 465 Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~ 543 (778)
T 3opb_A 465 EMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSA 543 (778)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCS
T ss_pred HHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcc
Confidence 9999999999999999999974 589999999999999999999987544 89999999999996654433221 1
Q ss_pred cCChHHHHHhhcC-CC-h------------hHHHHHHHHHHhcccCCcc-----hHHHHHhcCcccccccchhhhhhhHH
Q 008940 204 NGGLVPLLKLLDS-KN-G------------SLQHNAAFALYGLADNEDN-----VADFIRVGGVQKLQDGEFIVQATKDC 264 (548)
Q Consensus 204 ~~~l~~L~~ll~~-~~-~------------~v~~~a~~~L~~l~~~~~~-----~~~~~~~g~i~~L~~~~~~~~~~~~~ 264 (548)
.|++++|+.+|.. +. . --+..|+.+|.||+..+++ +..+++.
T Consensus 544 ~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~------------------- 604 (778)
T 3opb_A 544 LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST------------------- 604 (778)
T ss_dssp TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS-------------------
T ss_pred ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh-------------------
Confidence 3789999999983 21 1 1266899999999987633 3333221
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccc-eeeecCC------chHHHHHhhcCCCCccc
Q 008940 265 VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR-TIFIDGG------GLELLLGLLGSTNPKQQ 337 (548)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~-~~~~~~~------~i~~L~~ll~~~~~~v~ 337 (548)
.++++.|..+|.+.+..+|.+|+++++||+.+++.. +.+.+.+ .++.|+.++++++.++|
T Consensus 605 -------------~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r 671 (778)
T 3opb_A 605 -------------KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQ 671 (778)
T ss_dssp -------------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHH
T ss_pred -------------cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHH
Confidence 358899999999999999999999999999888763 2333222 37899999999999999
Q ss_pred hhhHHHHHHHhhh
Q 008940 338 LDGAVALFKLANK 350 (548)
Q Consensus 338 ~~a~~~L~~l~~~ 350 (548)
++|+++|.+++..
T Consensus 672 ~AAagALAnLts~ 684 (778)
T 3opb_A 672 RAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999653
No 57
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.84 E-value=2.3e-21 Score=155.32 Aligned_cols=93 Identities=20% Similarity=0.232 Sum_probs=86.3
Q ss_pred hcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHhHHHH
Q 008940 375 VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDL 454 (548)
Q Consensus 375 ~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~l 454 (548)
+.++.+||+++.++|+.|+|||.||+++|+||++ ....|.++++++++|+.+++|+|||++.++.+++.++
T Consensus 25 r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~l 95 (119)
T 3m5b_A 25 RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRPL 95 (119)
T ss_dssp HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHHH
T ss_pred HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHHH
Confidence 5779999999999999999999999999999985 2457999999999999999999999999999999999
Q ss_pred HHHHHHhChHhHHHHHHHHHHh
Q 008940 455 LRAADQYLLEGLKRLCEYTIAQ 476 (548)
Q Consensus 455 l~~a~~~~~~~l~~~c~~~l~~ 476 (548)
+.+|++|+++.|++.|++++.+
T Consensus 96 l~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 96 QEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 9999999999999999998764
No 58
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.83 E-value=1.6e-20 Score=150.28 Aligned_cols=93 Identities=27% Similarity=0.450 Sum_probs=87.1
Q ss_pred hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCcc-ccchH
Q 008940 371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSV-DVTLD 449 (548)
Q Consensus 371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~-~~~~~ 449 (548)
.++++.++.+||+++.++|+.|+|||.||+++|+||++||.++ ...|.++++++++|+.+++|+|||++ .++.+
T Consensus 22 l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~ 96 (116)
T 3fkc_A 22 LNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYSSKIVRVRSD 96 (116)
T ss_dssp HHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHTTSCCCSCCHH
T ss_pred HHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHH
Confidence 4567889999999999999999999999999999999999864 56899999999999999999999999 79999
Q ss_pred hHHHHHHHHHHhChHhHHH
Q 008940 450 IAQDLLRAADQYLLEGLKR 468 (548)
Q Consensus 450 ~~~~ll~~a~~~~~~~l~~ 468 (548)
++.+++.+|++|+++.|++
T Consensus 97 ~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 97 LLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHHHhCccccCc
Confidence 9999999999999999875
No 59
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.63 E-value=3.6e-14 Score=133.64 Aligned_cols=231 Identities=15% Similarity=0.074 Sum_probs=180.4
Q ss_pred HHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChh
Q 008940 34 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 113 (548)
Q Consensus 34 i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~ 113 (548)
....+.++.|++.|+++++.+|..|+++|+++.. .+.++.|+.++.++++.+|..++++|+.+......
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 3445789999999999999999999999999873 23688899999999999999999999999643222
Q ss_pred HHHHHHhcCChHHHH-HhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940 114 IKKEVLAAGALQPVI-GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 192 (548)
Q Consensus 114 ~~~~~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 192 (548)
.. ..++.+. .++.++++.++..++++|+++...++... ...++.|...+.++++.++..++.+|+++.
T Consensus 88 ~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 88 ED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp HH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred ch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 11 1234444 34677889999999999999975433222 235788999999999999999999999875
Q ss_pred cCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHH
Q 008940 193 QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 272 (548)
Q Consensus 193 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~ 272 (548)
. .+.++.|..++.++++.++..++++|+.+.....
T Consensus 157 ~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~----------------------------------- 191 (280)
T 1oyz_A 157 D----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS----------------------------------- 191 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH-----------------------------------
T ss_pred C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH-----------------------------------
Confidence 3 2478899999999999999999999998853221
Q ss_pred HHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940 273 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 349 (548)
Q Consensus 273 ~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 349 (548)
.+++.|+.++.++++.+|..|+++|+++. ....++.|..++.++ +++..++.+|..+..
T Consensus 192 ------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 192 ------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKN--TVYDDIIEAAGELGD 250 (280)
T ss_dssp ------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCc--cHHHHHHHHHHhcCc
Confidence 25667778888888889999999998875 235788888888764 488888888888754
No 60
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.61 E-value=6.4e-14 Score=140.20 Aligned_cols=314 Identities=11% Similarity=0.134 Sum_probs=233.1
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc--CCHHHHHHHHHHHHHhhccCcc--------------
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDE-------------- 71 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~-------------- 71 (548)
...+-|+.|+..|..+++. .+..+. .++++.|+..|+. .|.++...++.+|.++...+++
T Consensus 34 tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~ 109 (651)
T 3grl_A 34 TLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDL 109 (651)
T ss_dssp CSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CH
T ss_pred cchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHH
Confidence 3457799999999999853 333333 5899999999986 4688888899999887653332
Q ss_pred ---hhhHh-hhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChh-HHHHHHh-cCChHHHHHhhhcCChHHHHHHHHH
Q 008940 72 ---NKNQI-VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLA-AGALQPVIGLLSSCCSESQREAALL 145 (548)
Q Consensus 72 ---~~~~~-~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~-~g~i~~L~~ll~~~~~~~~~~a~~~ 145 (548)
+.+.+ .+.+.++.|+.+|++++..+|..++.+|..|+...++ .++.+.. .++++.|+.+|++..+.+|..++..
T Consensus 110 ~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallL 189 (651)
T 3grl_A 110 GSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLL 189 (651)
T ss_dssp HHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHH
Confidence 12233 3457899999999999999999999999999988877 6777774 5999999999999999999999999
Q ss_pred HHHhhcCCchhHHHHHhcCChHHHHHhhCCCCH----HHHHHHHHHHHHhhcCCc-chhhhHhcCChHHHHHhhcCCChh
Q 008940 146 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV----QLREMSAFALGRLAQDMH-NQAGIAHNGGLVPLLKLLDSKNGS 220 (548)
Q Consensus 146 L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~----~v~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~ 220 (548)
|.+++.++++.+..+.-.|+++.|+.+++.+.. .+...++.++.||...+. ++..+.+.|+++.|..+++.+++.
T Consensus 190 L~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~ 269 (651)
T 3grl_A 190 LQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDEN 269 (651)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCS
T ss_pred HHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccc
Confidence 999999999998888889999999999987443 688999999999998764 788899999999999999754321
Q ss_pred ------HHHH---HHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 008940 221 ------LQHN---AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA 291 (548)
Q Consensus 221 ------v~~~---a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~ 291 (548)
...+ ++.++.-|....... .....+...+.+.|+++.|+.++.+.
T Consensus 270 ~~W~~Qk~~N~~~~L~iIrlLv~~~~~~--------------------------~~t~~nQ~~~~~~g~l~~Ll~ll~~~ 323 (651)
T 3grl_A 270 SGWSAQKVTNLHLMLQLVRVLVSPNNPP--------------------------GATSSCQKAMFQCGLLQQLCTILMAT 323 (651)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTCTTSCH--------------------------HHHHHHHHHHHHTTHHHHHHHHHTCS
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCCCCC--------------------------CCCHHHHHHHHHCCCHHHHHHHHccC
Confidence 1122 333333343321110 01223444567788899999988874
Q ss_pred --hhhhhhhHHHHhhhccCCCc-cceeeecCC-----chHHHHH----hhcCC-CCccchhhHHHHHHHhhhc
Q 008940 292 --EKGVQRRVALALAHLCSPDD-QRTIFIDGG-----GLELLLG----LLGST-NPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 292 --~~~~~~~a~~aL~~l~~~~~-~~~~~~~~~-----~i~~L~~----ll~~~-~~~v~~~a~~~L~~l~~~~ 351 (548)
...++..|+.+++.++++.. ++..+.+.. ..|.++. ++.+. ...+|.+|+.++.....+.
T Consensus 324 ~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N 396 (651)
T 3grl_A 324 GVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN 396 (651)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC
Confidence 67788999999999987644 554443322 2233444 35443 3555888888888877654
No 61
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.61 E-value=5.2e-14 Score=140.82 Aligned_cols=321 Identities=15% Similarity=0.141 Sum_probs=236.1
Q ss_pred hhhHHHHHHHHHHHHHhhhChh-----------------h-HHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccC
Q 008940 8 AVNSVIRRAADAITNLAHENSS-----------------I-KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 69 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~-----------------~-~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 69 (548)
...++.+.++..|.++...++. + ...+.+.+.++.|+.+|++.+..+|..+++.|..++.++
T Consensus 74 ~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r 153 (651)
T 3grl_A 74 SDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQL 153 (651)
T ss_dssp TCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcC
Confidence 4457888899999887643322 1 134456688999999999999999999999999999877
Q ss_pred cc-hhhHhhh-cCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCCh----HHHHHHH
Q 008940 70 DE-NKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS----ESQREAA 143 (548)
Q Consensus 70 ~~-~~~~~~~-~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~----~~~~~a~ 143 (548)
++ .++.+.. .++++.|+.+|.+..+.+|..++.+|.+|+.+++++++.+.-+|+++.|+.++..+.. .+...|+
T Consensus 154 ~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL 233 (651)
T 3grl_A 154 GPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCL 233 (651)
T ss_dssp HHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHH
T ss_pred cHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHH
Confidence 77 7777875 4999999999999999999999999999999999999999999999999999987554 6889999
Q ss_pred HHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCH------HHHHH---HHHHHHHhhcCC-------cchhhhHhcCCh
Q 008940 144 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV------QLREM---SAFALGRLAQDM-------HNQAGIAHNGGL 207 (548)
Q Consensus 144 ~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~------~v~~~---a~~~L~~l~~~~-------~~~~~~~~~~~l 207 (548)
.++.||...++.++..+.+.|+++.|..+++.+++ ....+ +..++.-++... .++..+.+.|++
T Consensus 234 ~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l 313 (651)
T 3grl_A 234 ILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLL 313 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCH
Confidence 99999999999999999999999999999985432 12233 556666666442 246788899999
Q ss_pred HHHHHhhcCC--ChhHHHHHHHHHHhccc-CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHH
Q 008940 208 VPLLKLLDSK--NGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL 284 (548)
Q Consensus 208 ~~L~~ll~~~--~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 284 (548)
..|++++... ...++..|+.+++.+.+ ++.++..+.+..+ +.... ...++..|
T Consensus 314 ~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~v-p~~~~-----------------------~p~li~lL 369 (651)
T 3grl_A 314 QQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA-PSNPP-----------------------RPAIVVLL 369 (651)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEE-SSSSC-----------------------EEHHHHHH
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccC-CCCCC-----------------------cChHHHHH
Confidence 9999998865 56788899999999976 5556666654431 11000 01133334
Q ss_pred HHHHHh-hhhhhhhhHHHHhhhccCCCc-cceeeecC----------Cch---HHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940 285 LYLMRV-AEKGVQRRVALALAHLCSPDD-QRTIFIDG----------GGL---ELLLGLLGSTNPKQQLDGAVALFKLAN 349 (548)
Q Consensus 285 ~~ll~~-~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~----------~~i---~~L~~ll~~~~~~v~~~a~~~L~~l~~ 349 (548)
+.++.+ ....+|.+|+.++..+..+.+ .+..+... +.+ ..|..-+.+.++.-.-.|+.+|.++..
T Consensus 370 ~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~ 449 (651)
T 3grl_A 370 MSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQ 449 (651)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHc
Confidence 444444 457788899998888765432 22222111 111 124444555555444567888888887
Q ss_pred hcc
Q 008940 350 KAT 352 (548)
Q Consensus 350 ~~~ 352 (548)
+..
T Consensus 450 ~n~ 452 (651)
T 3grl_A 450 ENA 452 (651)
T ss_dssp TCH
T ss_pred CCH
Confidence 653
No 62
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.56 E-value=2e-14 Score=121.11 Aligned_cols=107 Identities=18% Similarity=0.308 Sum_probs=87.7
Q ss_pred EEEEe-CCeEEEchHHHHhcccHHHHhhhcC-CCC-CCCCCceecCCCCHHHHHHHHHHHhcCc----------------
Q 008940 383 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG-GYR-EKDARDIEIPNIRWEVFELMMRFIYTGS---------------- 443 (548)
Q Consensus 383 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~-~~~-e~~~~~i~l~~~~~~~~~~~l~~~Yt~~---------------- 443 (548)
|++.. +|+.|.+||.+ +..|+||++||.+ ++. |+.+..|+++++++.++..+++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 56654 79999999999 8999999999987 666 7777899999999999999999999988
Q ss_pred ----------cccchHhHHHHHHHHHHhChHhHHHHHHHHHHhcCC---HhhHHHHHHHH
Q 008940 444 ----------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS---LENVSSMYELS 490 (548)
Q Consensus 444 ----------~~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~---~~n~~~~~~~a 490 (548)
+.++.+++.+|+.||++|+++.|.++|+.++...+. ++..-.++.+.
T Consensus 82 ~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~ 141 (159)
T 2ast_A 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIK 141 (159)
T ss_dssp CCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCC
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCC
Confidence 778899999999999999999999999999976554 44444444433
No 63
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.54 E-value=4.1e-13 Score=126.41 Aligned_cols=241 Identities=15% Similarity=0.133 Sum_probs=183.1
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH-
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI- 86 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv- 86 (548)
..+.++..|+.+|..+.. .+.++.|+++++++++.+|..|+.+|+.+... +.... ..++.|.
T Consensus 35 ~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~~~~-----~l~~~L~~ 97 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCED-----NVFNILNN 97 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHH-----HHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccch-----HHHHHHHH
Confidence 456788888888887761 23567899999999999999999999998742 22111 1233444
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
.+++++++.+|..++++|+++....+... ...++.|..++.++++.++..++++|+++.. .+.+
T Consensus 98 ~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~ 161 (280)
T 1oyz_A 98 MALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATI 161 (280)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHH
Confidence 24578899999999999999974433221 2357899999999999999999999998842 2588
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhc
Q 008940 167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG 246 (548)
Q Consensus 167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g 246 (548)
+.|+.+++++++.++..++++|+.+.... ...++.|..++.++++.++..++.+|+++...
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~----------- 222 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDK----------- 222 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCG-----------
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCH-----------
Confidence 99999999999999999999999985322 13567899999999999999999999998621
Q ss_pred CcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHH
Q 008940 247 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL 326 (548)
Q Consensus 247 ~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~ 326 (548)
..++.|+.++.+ ++++..++.+|+.+.. ...++.|.
T Consensus 223 --------------------------------~~~~~L~~~l~d--~~vr~~a~~aL~~i~~----------~~~~~~L~ 258 (280)
T 1oyz_A 223 --------------------------------RVLSVLCDELKK--NTVYDDIIEAAGELGD----------KTLLPVLD 258 (280)
T ss_dssp --------------------------------GGHHHHHHHHTS--SSCCHHHHHHHHHHCC----------GGGHHHHH
T ss_pred --------------------------------hhHHHHHHHhcC--ccHHHHHHHHHHhcCc----------hhhhHHHH
Confidence 156677777765 4499999999998854 25789999
Q ss_pred HhhcC-CCCccchhhHHHH
Q 008940 327 GLLGS-TNPKQQLDGAVAL 344 (548)
Q Consensus 327 ~ll~~-~~~~v~~~a~~~L 344 (548)
.++.+ ++++++..+...|
T Consensus 259 ~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 259 TMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHTTSSCCHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHh
Confidence 99874 5566666666554
No 64
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.52 E-value=8.2e-14 Score=152.40 Aligned_cols=334 Identities=14% Similarity=0.063 Sum_probs=226.7
Q ss_pred hhhHHHHHHHHHHHHHhhh-----ChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCCh
Q 008940 8 AVNSVIRRAADAITNLAHE-----NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNAL 82 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 82 (548)
..+.+|..|+-.|.+.... +++.+.. +-..+++.+.++++.+|..++.++..++..+... ...+.+
T Consensus 60 ~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~-----ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~----~wp~ll 130 (852)
T 4fdd_A 60 EDEPTRSLSGLILKNNVKAHFQNFPNGVTDF-----IKSECLNNIGDSSPLIRATVGILITTIASKGELQ----NWPDLL 130 (852)
T ss_dssp SCHHHHHHHHHHHHHHTTTSGGGCCHHHHHH-----HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT----TCTTHH
T ss_pred CChHHHHHHHHHHHHHHHHccCCCCHHHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc----ccHHHH
Confidence 3457788888778777632 2222332 2346667778888999999999999999743211 235678
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH----hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940 83 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL----AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 158 (548)
Q Consensus 83 ~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 158 (548)
+.|+..+.++++.+++.++.+|+.++...+.....-. -...++.+++++.+.+++++..|+++|.++....+....
T Consensus 131 ~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~ 210 (852)
T 4fdd_A 131 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM 210 (852)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHH
Confidence 9999999999999999999999999865433211100 123577888888889999999999999988755432111
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940 159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 238 (548)
Q Consensus 159 ~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 238 (548)
. .-.++++.+...+.++++.++..++++|..++...+....-.-.+.++.++..+.+.++.++..|+..+..++.....
T Consensus 211 ~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~ 289 (852)
T 4fdd_A 211 L-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC 289 (852)
T ss_dssp T-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH
T ss_pred H-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH
Confidence 1 112567888888999999999999999999997554321111124566778888888999999999999999876533
Q ss_pred hHHHHH--hcCcccccccc-----------hh------------hhhhhHHHHHHHHHHHHhhhhh----hhHHHHHHHH
Q 008940 239 VADFIR--VGGVQKLQDGE-----------FI------------VQATKDCVAKTLKRLEEKIHGR----VLNHLLYLMR 289 (548)
Q Consensus 239 ~~~~~~--~g~i~~L~~~~-----------~~------------~~~~~~~~~~~~~~~~~~~~~~----~~~~L~~ll~ 289 (548)
...+.. ...++.+.... .+ ......+...++..+....... +++.+..++.
T Consensus 290 ~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~ 369 (852)
T 4fdd_A 290 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF 369 (852)
T ss_dssp HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 221100 01222221110 00 0011233445555555544444 4455555566
Q ss_pred hhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 290 VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 290 ~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
++++.+|..|+++|++++.+......-.-.+.++.++.++.++++.||..+++++.+++...
T Consensus 370 ~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 370 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999986542211123467899999999999999999999999999753
No 65
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.49 E-value=8.3e-14 Score=152.34 Aligned_cols=305 Identities=14% Similarity=0.097 Sum_probs=214.1
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHH----hcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVR----MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 84 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~----~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 84 (548)
.+.+++.++.+|..++...+..-..-. -...++.++++++++++.+|..|+.+|..+....+...... -.++++.
T Consensus 141 ~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~ 219 (852)
T 4fdd_A 141 DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIEN 219 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHH
Confidence 457888999999999864333211000 12356777778888899999999999998886433211111 1246788
Q ss_pred HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHH--h
Q 008940 85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV--Q 162 (548)
Q Consensus 85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~ 162 (548)
++.++.++++++|..++++|..++...++.-.... .++++.+..++.+.+++++..|+.++..++... ..+..+. -
T Consensus 220 l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~ 297 (852)
T 4fdd_A 220 LFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQP-ICKDVLVRHL 297 (852)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-THHHHHTTTH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-hHHHHHHHHH
Confidence 88888899999999999999999876665322222 247788888889989999999999999998542 2222111 1
Q ss_pred cCChHHHHHhh-----------CC-----------CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChh
Q 008940 163 RGAVRPLIEML-----------QS-----------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGS 220 (548)
Q Consensus 163 ~g~v~~L~~ll-----------~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 220 (548)
..+++.++..+ .+ .+..++..++.+|..++...+. .+. ...++.+.+++.+.++.
T Consensus 298 ~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~ 374 (852)
T 4fdd_A 298 PKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWV 374 (852)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHH
Confidence 23566666666 23 2235789999999999865432 221 23566677888888999
Q ss_pred HHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHH
Q 008940 221 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA 300 (548)
Q Consensus 221 v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~ 300 (548)
++..|+++|++++..... .+ + ..-.++++.++.++.++++.+|..++
T Consensus 375 ~R~aa~~alg~i~~~~~~--~~-~------------------------------~~l~~~l~~l~~~l~d~~~~Vr~~a~ 421 (852)
T 4fdd_A 375 VKESGILVLGAIAEGCMQ--GM-I------------------------------PYLPELIPHLIQCLSDKKALVRSITC 421 (852)
T ss_dssp HHHHHHHHHHHTTTTTHH--HH-G------------------------------GGHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchH--HH-H------------------------------HHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999875431 11 0 01134788889999999999999999
Q ss_pred HHhhhccCCCc-cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940 301 LALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 301 ~aL~~l~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 352 (548)
+++++++..-. ......-.+.++.|++.+.++++.+|..|+++|.++++...
T Consensus 422 ~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 422 WTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp HHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999986321 11111123567888999988899999999999999997643
No 66
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.48 E-value=1.2e-12 Score=117.41 Aligned_cols=189 Identities=28% Similarity=0.312 Sum_probs=158.7
Q ss_pred cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH
Q 008940 37 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 116 (548)
Q Consensus 37 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 116 (548)
.+.++.|++.|+++++.+|..|+..|+.+.. .+.++.|+.++.++++.+|..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4568899999999999999999999998764 2578999999999999999999999999842
Q ss_pred HHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 008940 117 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 196 (548)
Q Consensus 117 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 196 (548)
.+.++.|+.++.++++.++..++++|..+.. .+.++.|+.++.++++.++..++.+|+++..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 2468899999999999999999999999842 2477899999999999999999999999843
Q ss_pred chhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhh
Q 008940 197 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 276 (548)
Q Consensus 197 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (548)
...++.|..++.++++.++..++.+|..+...
T Consensus 142 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------------------------------------- 173 (211)
T 3ltm_A 142 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGGE----------------------------------------- 173 (211)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-----------------------------------------
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-----------------------------------------
Confidence 23678899999999999999999999998531
Q ss_pred hhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc
Q 008940 277 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 311 (548)
Q Consensus 277 ~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~ 311 (548)
..++.|..++.++++.+|..|..+|.++.....
T Consensus 174 --~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 174 --RVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp --HHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred --hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 256778888999999999999999999976544
No 67
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.46 E-value=5.6e-13 Score=139.62 Aligned_cols=296 Identities=16% Similarity=0.100 Sum_probs=216.5
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
...+.++..|+.+|..++...+.. ......++.+..+++++++.+|..|+.+|..++...+.. .....+++.+.
T Consensus 175 d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~ 248 (588)
T 1b3u_A 175 DDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLR 248 (588)
T ss_dssp CSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHH
Confidence 346788999999999988533221 122467788888888889999999999999988632221 12234778888
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchh-HHHHHhcCC
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQRGA 165 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~g~ 165 (548)
.++.++++.+|..++.+|+.++..... .......++.+..++.+++++++..++++|..++...... +.......+
T Consensus 249 ~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l 325 (588)
T 1b3u_A 249 QAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQI 325 (588)
T ss_dssp HHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTH
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHH
Confidence 888899999999999999999753211 1233457899999999999999999999999998654322 111233467
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHh
Q 008940 166 VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV 245 (548)
Q Consensus 166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 245 (548)
+|.+..+++++++.+|..++++|..++...... ......++.+..++++.+++++..++.++..++..-...
T Consensus 326 ~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~------ 397 (588)
T 1b3u_A 326 LPCIKELVSDANQHVKSALASVIMGLSPILGKD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR------ 397 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH------
Confidence 888999999999999999999999998543221 122346777889999889999999988888776432110
Q ss_pred cCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHH
Q 008940 246 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELL 325 (548)
Q Consensus 246 g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L 325 (548)
.....+++.+..++.+.++.+|..++.++..++..-... +.....++.+
T Consensus 398 -----------------------------~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l 446 (588)
T 1b3u_A 398 -----------------------------QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLC 446 (588)
T ss_dssp -----------------------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHH
Confidence 011236777788888888999999999999886421111 1223467888
Q ss_pred HHhhcCCCCccchhhHHHHHHHhhh
Q 008940 326 LGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 326 ~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
.+++.+++..+|..|+.++..++..
T Consensus 447 ~~~l~d~~~~Vr~~a~~~l~~l~~~ 471 (588)
T 1b3u_A 447 MAWLVDHVYAIREAATSNLKKLVEK 471 (588)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 9999999899999999999999875
No 68
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.45 E-value=3.8e-12 Score=113.23 Aligned_cols=185 Identities=28% Similarity=0.317 Sum_probs=158.6
Q ss_pred cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH
Q 008940 37 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 116 (548)
Q Consensus 37 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 116 (548)
.+..+.++++|+++++.+|..|+.+|+.+.. .+.++.|+.++.++++.+|..++++|+.+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 3567889999999999999999999998774 2468999999999999999999999998842
Q ss_pred HHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 008940 117 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 196 (548)
Q Consensus 117 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 196 (548)
...++.|+.++.++++.++..++++|..+.. .+.++.|..++.++++.++..++++|+.+..
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 2468899999999999999999999999842 2477889999999999999999999999853
Q ss_pred chhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhh
Q 008940 197 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 276 (548)
Q Consensus 197 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (548)
...++.|..++.++++.++..++.+|+.+...
T Consensus 137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~----------------------------------------- 168 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGGE----------------------------------------- 168 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-----------------------------------------
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-----------------------------------------
Confidence 24678899999999999999999999998421
Q ss_pred hhhhhHHHHHHHHhhhhhhhhhHHHHhhhcc
Q 008940 277 HGRVLNHLLYLMRVAEKGVQRRVALALAHLC 307 (548)
Q Consensus 277 ~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~ 307 (548)
..++.|..++.++++.+|..|..+|..+-
T Consensus 169 --~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 169 --RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp --HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred --hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 25677888889999999999999998874
No 69
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.45 E-value=7.9e-13 Score=118.72 Aligned_cols=189 Identities=23% Similarity=0.248 Sum_probs=158.7
Q ss_pred cCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940 79 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 158 (548)
Q Consensus 79 ~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 158 (548)
.+.++.|+..|.++++.+|..++..|+.+.. .+.++.|+.++.++++.++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4578999999999999999999999998842 2478999999999999999999999999842
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940 159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 238 (548)
Q Consensus 159 ~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 238 (548)
.+.++.|+.++.++++.++..++.+|+.+.. .+.++.|..++.++++.++..++.+|+++...
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--- 142 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE--- 142 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH---
Confidence 2477899999999999999999999999853 24678899999999999999999999998532
Q ss_pred hHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec
Q 008940 239 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID 318 (548)
Q Consensus 239 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~ 318 (548)
..++.|..++.++++.+|..|+.+|+.+..
T Consensus 143 ----------------------------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------- 172 (211)
T 3ltm_A 143 ----------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG---------- 172 (211)
T ss_dssp ----------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------
T ss_pred ----------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------
Confidence 146778888888999999999999999842
Q ss_pred CCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940 319 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 319 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 352 (548)
...++.|.+++.++++.+|..|..+|.++..+..
T Consensus 173 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 173 ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 4578899999999999999999999999877543
No 70
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.45 E-value=5.2e-13 Score=139.87 Aligned_cols=326 Identities=13% Similarity=0.080 Sum_probs=221.2
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcc-hhhHhhhcCChHHHH
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLI 86 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~Lv 86 (548)
.++.+|..++.+|..++...+. .......++.+..+++++++.+|..|+.+|+.++..-.. .+.......+++.+.
T Consensus 254 ~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~ 330 (588)
T 1b3u_A 254 KSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIK 330 (588)
T ss_dssp SSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHH
Confidence 3457888888888888742111 112335678888999999999999999999999864222 111122345778888
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
.+++++++.+|..++++|+.++..... .......+|.+..++.+.+++++..++.++..++...... .....++
T Consensus 331 ~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~l 404 (588)
T 1b3u_A 331 ELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLL 404 (588)
T ss_dssp HHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHH
Confidence 999999999999999999999743211 1222357889999999999999999999988887432211 1224577
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhc
Q 008940 167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG 246 (548)
Q Consensus 167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g 246 (548)
|.+..++.+++..+|..++.++..++...... ......++.+..++.+++..++..++.+++.++..-... .....
T Consensus 405 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~ 480 (588)
T 1b3u_A 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHAT 480 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHH
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHH
Confidence 88889999999999999999999998532221 112234677888899999999999999999997532211 11223
Q ss_pred Ccccccccchhhh-hhhHHHHHHHHHHHHh-----hhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCC
Q 008940 247 GVQKLQDGEFIVQ-ATKDCVAKTLKRLEEK-----IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGG 320 (548)
Q Consensus 247 ~i~~L~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~ 320 (548)
+++.|........ ........++..+... ....+++.++.++++.++.+|..++++|+.++..-... +....
T Consensus 481 llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~ 558 (588)
T 1b3u_A 481 IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSE 558 (588)
T ss_dssp THHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh--hhHHH
Confidence 4444332111100 1111122222222221 22357788888888888999999999999997532211 12245
Q ss_pred chHHHHHhhcCCCCccchhhHHHHHHHh
Q 008940 321 GLELLLGLLGSTNPKQQLDGAVALFKLA 348 (548)
Q Consensus 321 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 348 (548)
.+|.|.+++.++++++|..|+.++..+.
T Consensus 559 ~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 559 VKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 6788888888999999999999998764
No 71
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.41 E-value=2.1e-12 Score=114.99 Aligned_cols=186 Identities=24% Similarity=0.259 Sum_probs=158.3
Q ss_pred cCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940 79 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 158 (548)
Q Consensus 79 ~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 158 (548)
.+..+.+++.|+++++.+|..|++.|+.+.. .+.++.|++++.++++.++..++++|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 3567889999999999999999999998842 2468899999999999999999999998842
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940 159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 238 (548)
Q Consensus 159 ~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 238 (548)
.+.++.|+..+.++++.++..++++|+.+.. ...++.|..++.++++.++..++.+|+++...
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--- 137 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE--- 137 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH---
Confidence 2467899999999999999999999999853 23678899999999999999999999988531
Q ss_pred hHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec
Q 008940 239 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID 318 (548)
Q Consensus 239 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~ 318 (548)
..++.|..++.+.++.+|..|+++|+.+..
T Consensus 138 ----------------------------------------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---------- 167 (201)
T 3ltj_A 138 ----------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG---------- 167 (201)
T ss_dssp ----------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------
T ss_pred ----------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------
Confidence 256778888988999999999999999832
Q ss_pred CCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940 319 GGGLELLLGLLGSTNPKQQLDGAVALFKLAN 349 (548)
Q Consensus 319 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 349 (548)
...++.|..++.++++.+|..|..+|.++..
T Consensus 168 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 168 ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3478899999999999999999999988753
No 72
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.40 E-value=1.4e-12 Score=132.27 Aligned_cols=298 Identities=12% Similarity=0.042 Sum_probs=195.6
Q ss_pred HHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC--CHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhc
Q 008940 14 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLR 90 (548)
Q Consensus 14 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~ 90 (548)
..++.++..++........ -.+.++.|++.++++ ++.++..++.+|+.++... ++...... ..+++.++..+.
T Consensus 107 ~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~ 182 (462)
T 1ibr_B 107 SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMR 182 (462)
T ss_dssp CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhC
Confidence 3455666666643211101 135678888888888 8999999999999999632 22211111 236778888888
Q ss_pred cC--ChHHHHHHHHHHHHhhcCChhHH-HHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChH
Q 008940 91 SE--DSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 167 (548)
Q Consensus 91 ~~--~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~ 167 (548)
++ +..+|..|+++++++.....+.. ......-.++.+...+.+.+++++..++.+|..++...+.........++++
T Consensus 183 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 262 (462)
T 1ibr_B 183 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA 262 (462)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 78999999999999764322111 0111111466667777888899999999999999865443211111126777
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCCc------------------chhhhHh---cCChHHHHHhhcC-------CCh
Q 008940 168 PLIEMLQSPDVQLREMSAFALGRLAQDMH------------------NQAGIAH---NGGLVPLLKLLDS-------KNG 219 (548)
Q Consensus 168 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------------------~~~~~~~---~~~l~~L~~ll~~-------~~~ 219 (548)
.++..+++.++.++..++..+..++.... ....+.. ...++.+++.+.. .+.
T Consensus 263 ~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~ 342 (462)
T 1ibr_B 263 ITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 342 (462)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccc
Confidence 78888888899999999999999885421 0001111 1234445555532 224
Q ss_pred hHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhH
Q 008940 220 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRV 299 (548)
Q Consensus 220 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a 299 (548)
.++..|+.+|..++..-.. .+ -..+++.+...+.+.++.+|..|
T Consensus 343 ~~r~~a~~~L~~l~~~~~~--~~----------------------------------~~~~~~~l~~~l~~~~~~~r~aa 386 (462)
T 1ibr_B 343 NPCKAAGVCLMLLATCCED--DI----------------------------------VPHVLPFIKEHIKNPDWRYRDAA 386 (462)
T ss_dssp SHHHHHHHHHHHHHHHTTT--TH----------------------------------HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccH--HH----------------------------------HHHHHHHHHHHhcCCChHHHHHH
Confidence 5677777777777643211 00 01255666667777899999999
Q ss_pred HHHhhhccCCCc-cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 300 ALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 300 ~~aL~~l~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
+.+|+.++.+.. ....-.-...++.+++++.++++.+|..|+++|.+++...
T Consensus 387 l~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 999999997643 1111112568999999999999999999999999999864
No 73
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.34 E-value=2.7e-12 Score=97.90 Aligned_cols=79 Identities=23% Similarity=0.403 Sum_probs=65.0
Q ss_pred EEEEe-CCeEEEchHHHHhcccHHHHhhhcC--CCCCCCCCceecCCCCHHHHHHHHHHHh-----c---Cccc---cch
Q 008940 383 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIY-----T---GSVD---VTL 448 (548)
Q Consensus 383 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y-----t---~~~~---~~~ 448 (548)
+++.. ||+.|.+||.+ +..|+||++||.+ ++.|+.+..|+++++++.+++.+++|+| + +.++ ++.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 34443 68999999999 9999999999986 6778888899999999999999999999 5 6777 899
Q ss_pred HhHHHHHHHHHHhC
Q 008940 449 DIAQDLLRAADQYL 462 (548)
Q Consensus 449 ~~~~~ll~~a~~~~ 462 (548)
+++.+|+.||++|+
T Consensus 83 ~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 83 EIALELLMAANFLD 96 (97)
T ss_dssp GGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhC
Confidence 99999999999997
No 74
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.34 E-value=1.4e-11 Score=128.31 Aligned_cols=316 Identities=15% Similarity=0.093 Sum_probs=216.9
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
+.+|.++..|+++|+++. .++... ..++.+.+++.++++.+|..|+.++.++...+++.. .+.+.++.+.
T Consensus 97 ~~n~~ir~~AL~~L~~i~--~~~~~~-----~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~ 166 (591)
T 2vgl_B 97 DPNPLIRALAVRTMGCIR--VDKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLR 166 (591)
T ss_dssp SSSHHHHHHHHHHHHTCC--SGGGHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCC--hHHHHH-----HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHH
Confidence 456777878877777775 333222 245678899999999999999999999998655533 2346789999
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
.+|.++++.++..|+.+|..++..+++.+......+.++.|+..+.+.++..+...+.++..++..++... ...+
T Consensus 167 ~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l 241 (591)
T 2vgl_B 167 DLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSIC 241 (591)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHH
T ss_pred HHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHH
Confidence 99999999999999999999987765321000011235677777777888888888888888874433221 2467
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCC---cchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHH
Q 008940 167 RPLIEMLQSPDVQLREMSAFALGRLAQDM---HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI 243 (548)
Q Consensus 167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 243 (548)
+.+..++++.++.++..|++++.++.... +...........+.|+.++ +++++++..++.+|..+....+.
T Consensus 242 ~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~----- 315 (591)
T 2vgl_B 242 ERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE----- 315 (591)
T ss_dssp HHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-----
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-----
Confidence 88888899999999999999999997432 1111112234556677666 47899999999999999763221
Q ss_pred HhcCcccccccchh-hhhhhHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec
Q 008940 244 RVGGVQKLQDGEFI-VQATKDCVAKTLKRLEEKIHGR----VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID 318 (548)
Q Consensus 244 ~~g~i~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~ 318 (548)
.+.......+. ..........+++.+..+.+.. +++.|..++.+.+.++|..++++++.++..-.. ..
T Consensus 316 ---~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~----~~ 388 (591)
T 2vgl_B 316 ---ILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ----SA 388 (591)
T ss_dssp ---TTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH----HH
T ss_pred ---HHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh----HH
Confidence 11111111011 0111222334455554454433 566666777778999999999999999865321 11
Q ss_pred CCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 319 GGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 319 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
...++.|++++.+....++..+..++.++...
T Consensus 389 ~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~ 420 (591)
T 2vgl_B 389 ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRK 420 (591)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 34689999999998888888888899998875
No 75
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.31 E-value=4e-11 Score=124.93 Aligned_cols=259 Identities=14% Similarity=0.095 Sum_probs=194.0
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 118 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 118 (548)
+.+.+++++++++..++..+..++..++..+++... -++..+.+-+.++++.+|..|+++|+++. .++..+.
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~- 121 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEY- 121 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-
Confidence 456788899999999999999999998864444322 24667778888999999999999999995 3444333
Q ss_pred HhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch
Q 008940 119 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 198 (548)
Q Consensus 119 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 198 (548)
.++.+.+++.+.++.+++.|+.++.+++..+++.. .+.++++.+..+|.++++.++..|+.+|..++...+..
T Consensus 122 ----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 122 ----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp ----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred ----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCc
Confidence 46789999999999999999999999987665532 23578899999999999999999999999999765432
Q ss_pred h-hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhh
Q 008940 199 A-GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 277 (548)
Q Consensus 199 ~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (548)
. .-...+.+..|+..+.+.++..+...+.++..++..++.. .
T Consensus 195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~-------------------------------------~ 237 (591)
T 2vgl_B 195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE-------------------------------------A 237 (591)
T ss_dssp CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH-------------------------------------H
T ss_pred cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH-------------------------------------H
Confidence 1 1111233556777777788888888888888887543210 1
Q ss_pred hhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC----CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 278 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSP----DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 278 ~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~----~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
..+++.+..++++.++.++.+|++++.++... ++..+.+ -....+.|+.++. +++++|..|+.+|..+....
T Consensus 238 ~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~ 313 (591)
T 2vgl_B 238 QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKR 313 (591)
T ss_dssp HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhC
Confidence 23566777778889999999999999999752 2221111 1245677777664 78899999999999998763
No 76
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.26 E-value=2.4e-11 Score=99.57 Aligned_cols=100 Identities=15% Similarity=0.209 Sum_probs=85.2
Q ss_pred EEEEe-CCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCc------------------
Q 008940 383 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS------------------ 443 (548)
Q Consensus 383 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~------------------ 443 (548)
+++.. +|+.|.+|+.+ +..|++|++||... + ...|+++++++.+++.+++|+|...
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~---~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 78 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDL---G-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 78 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHT---C-CSSEECTTCCHHHHHHHHHHHHHHTTCC---------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhc---C-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhh
Confidence 55665 68999999998 88999999999753 1 5589999999999999999999876
Q ss_pred --------cccchHhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHH
Q 008940 444 --------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMY 487 (548)
Q Consensus 444 --------~~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~ 487 (548)
+.++.+++.+|+.||++|+++.|.++|+.++...+...+.-++.
T Consensus 79 i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR 130 (141)
T 1fs1_B 79 IPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIR 130 (141)
T ss_dssp --HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHH
Confidence 56788899999999999999999999999998777665554443
No 77
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.19 E-value=1.1e-10 Score=121.93 Aligned_cols=306 Identities=13% Similarity=0.140 Sum_probs=208.4
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
+.+|.++..|+++|+++.. ++. . ...++.+.++++++++.+|..|+.++.++...+++... +.++.+.
T Consensus 118 ~~n~~vr~lAL~~L~~i~~--~~~----~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~ 185 (618)
T 1w63_A 118 HSTQFVQGLALCTLGCMGS--SEM----C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATK 185 (618)
T ss_dssp CSSSHHHHHHHHHHHHHCC--HHH----H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTT
T ss_pred CCCHhHHHHHHHHHHhcCC--HHH----H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHH
Confidence 4567888888999988872 332 1 24567889999999999999999999999986665433 5778888
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc---------------CChHHHHHHHHHHHHhhc
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS---------------CCSESQREAALLLGQFAA 151 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---------------~~~~~~~~a~~~L~~l~~ 151 (548)
.++.+.++.++..|+.+|..++..+++....+ ...+|.++.+|.+ .++-.+...+.+|..++.
T Consensus 186 ~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 186 NLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred HHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 89999999999999999999987655532222 2578888887763 367778888899999986
Q ss_pred CCchhHHHHHhcCChHHHHHhhC------CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHH
Q 008940 152 TDSDCKVHIVQRGAVRPLIEMLQ------SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNA 225 (548)
Q Consensus 152 ~~~~~~~~~~~~g~v~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a 225 (548)
.++... ....+.|..+++ +.+..+...++.++..+...+ .+. ..++..|..++.+++++++..|
T Consensus 264 ~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L~~~d~~vr~~a 333 (618)
T 1w63_A 264 NDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES----GLR-VLAINILGRFLLNNDKNIRYVA 333 (618)
T ss_dssp TCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHHTCSSTTTHHHH
T ss_pred CCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHHhCCCCchHHHH
Confidence 654322 234455555542 234578888888888875422 111 1356778888988899999999
Q ss_pred HHHHHhcccCCcchHHHHHh---cCcccccccchhhhhhhHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhhhhhhhh
Q 008940 226 AFALYGLADNEDNVADFIRV---GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR----VLNHLLYLMRVAEKGVQRR 298 (548)
Q Consensus 226 ~~~L~~l~~~~~~~~~~~~~---g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~~ll~~~~~~~~~~ 298 (548)
+.+|..++..... +++. .++..+- +........+++.+..+.+.. ++..++..+.+.+.+++..
T Consensus 334 L~~L~~i~~~~p~---~~~~~~~~i~~~l~------d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~ 404 (618)
T 1w63_A 334 LTSLLKTVQTDHN---AVQRHRSTIVDCLK------DLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKAD 404 (618)
T ss_dssp HHHHHHHHHHHHH---HHGGGHHHHHHGGG------SSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHhhCHH---HHHHHHHHHHHHcc------CCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999998754211 1110 0111111 111222334444444444432 6777777787788888888
Q ss_pred HHHHhhhccCC-CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 299 VALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 299 a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
++.+|+.++.. ++.. ...++.|++++......++..+...+..+..+
T Consensus 405 ~v~~I~~la~k~~~~~-----~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~ 452 (618)
T 1w63_A 405 CASGIFLAAEKYAPSK-----RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITN 452 (618)
T ss_dssp HHHHHHHHHHSSCCCH-----HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccH-----HHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Confidence 88888888753 1211 12467888888877677777788888887765
No 78
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.16 E-value=1.4e-09 Score=113.75 Aligned_cols=309 Identities=12% Similarity=0.109 Sum_probs=209.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
+.+|.++..|+.++.++...+|+... +.++.+.+++.+.++.++..|+.+|..++..+++....+ ...++.++
T Consensus 153 ~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~ 225 (618)
T 1w63_A 153 TSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLV 225 (618)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHH
Confidence 45689999999999999987776332 678888999999999999999999999997544432222 24678888
Q ss_pred HHhcc---------------CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc------CChHHHHHHHHH
Q 008940 87 LMLRS---------------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS------CCSESQREAALL 145 (548)
Q Consensus 87 ~ll~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~~~~a~~~ 145 (548)
.+|.+ .++-.+...+++|+.++..++...+ ...+.|..++.. .+..+...|+++
T Consensus 226 ~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~ 300 (618)
T 1w63_A 226 RILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLT 300 (618)
T ss_dssp HHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 77753 4778888999999999877665432 345555555532 235688888888
Q ss_pred HHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHH
Q 008940 146 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNA 225 (548)
Q Consensus 146 L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a 225 (548)
+..+.. .+..+ ..+++.|..++.++++.++..++.+|..++...+. ... .....++..+.+++..++..+
T Consensus 301 i~~l~~-~~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~~-~~~~~i~~~l~d~d~~Ir~~a 370 (618)
T 1w63_A 301 IMDIKS-ESGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AVQ-RHRSTIVDCLKDLDVSIKRRA 370 (618)
T ss_dssp HHHSCC-CHHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HHG-GGHHHHHHGGGSSCHHHHHHH
T ss_pred HHhcCC-CHHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HHH-HHHHHHHHHccCCChhHHHHH
Confidence 888743 22211 13567888889988999999999999999865332 222 245678888999999999999
Q ss_pred HHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHH---HHHHHHHHhh---hhhhhHHHHHHHHhhhhhhhhhH
Q 008940 226 AFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVA---KTLKRLEEKI---HGRVLNHLLYLMRVAEKGVQRRV 299 (548)
Q Consensus 226 ~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~L~~ll~~~~~~~~~~a 299 (548)
+.+|..++..... ..++ +.|..... ........ ..+..+.... ...+++.++.++......++..+
T Consensus 371 lelL~~l~~~~nv-~~iv-----~eL~~~l~--~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~ 442 (618)
T 1w63_A 371 MELSFALVNGNNI-RGMM-----KELLYFLD--SCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDA 442 (618)
T ss_dssp HHHHHHHCCSSST-HHHH-----HHHHHHHH--HCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSH
T ss_pred HHHHHHHcccccH-HHHH-----HHHHHHHH--hCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHH
Confidence 9999999875543 2222 11111000 01111122 2233333322 12378889999998777788888
Q ss_pred HHHhhhccC-CCccceeeecCCchHHHHHhhcC--CCCccchhhHHHHHHHhhh
Q 008940 300 ALALAHLCS-PDDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 300 ~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~ 350 (548)
...+..+.. .++.+. .+++.|+..+.+ .+......++|.|+..+..
T Consensus 443 ~~~l~~ii~~~p~l~~-----~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~ 491 (618)
T 1w63_A 443 VPNLIQLITNSVEMHA-----YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDL 491 (618)
T ss_dssp HHHHHHHHHHSCSTHH-----HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChhHHH-----HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHH
Confidence 888888864 343332 356778888774 3344556789999988764
No 79
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.16 E-value=4.3e-10 Score=123.50 Aligned_cols=306 Identities=13% Similarity=0.090 Sum_probs=206.7
Q ss_pred hhHHHHHHHHHHHHHhhhC-hhhHHHHHhcCCchHHHHhhccC--CHHHHHHHHHHHHHhhccCcchhh-HhhhcCChHH
Q 008940 9 VNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPT 84 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~ 84 (548)
++.++..++.++..++..- ++.-.. .-...++.+...+.++ +..+|..|+.++..++..-..+.. ......+++.
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~ 221 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQV 221 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHGG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHhhHHh-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5688999999999998542 221111 1124566677777776 689999999999998753222111 1111125667
Q ss_pred HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCch---------
Q 008940 85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD--------- 155 (548)
Q Consensus 85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--------- 155 (548)
+...+.+++.+++..++.+|..++...+..-...+...+++.+...+.+.++.++..++..+.+++.....
T Consensus 222 l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~ 301 (876)
T 1qgr_A 222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAA 301 (876)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhcccc
Confidence 77777788999999999999999876554323333346788888888888899999999988888743100
Q ss_pred -----------hHHHHHhcCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC
Q 008940 156 -----------CKVHIVQRGAVRPLIEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK 217 (548)
Q Consensus 156 -----------~~~~~~~~g~v~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~ 217 (548)
....-.-..+++.++..+.. ++..+|..+..+|..++..... .+. ...++.+...+.+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~ 378 (876)
T 1qgr_A 302 EQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNP 378 (876)
T ss_dssp HHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCS
T ss_pred ccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCC
Confidence 00000012356677777752 3567999999999999865431 121 23455566777888
Q ss_pred ChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhh
Q 008940 218 NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQR 297 (548)
Q Consensus 218 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~ 297 (548)
++.++..++.+++.++..... ..+ . ..-..+++.++..+.++++.+|.
T Consensus 379 ~~~~r~~a~~~l~~i~~~~~~-~~~------------------------------~-~~~~~~l~~l~~~l~d~~~~vr~ 426 (876)
T 1qgr_A 379 DWRYRDAAVMAFGCILEGPEP-SQL------------------------------K-PLVIQAMPTLIELMKDPSVVVRD 426 (876)
T ss_dssp SHHHHHHHHHHHHHTSSSSCH-HHH------------------------------H-HHHHHHHHHHHHHHTCSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHcCCCH-HHH------------------------------H-HHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999865321 000 0 01123688888999889999999
Q ss_pred hHHHHhhhccCCCccc--eeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 298 RVALALAHLCSPDDQR--TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 298 ~a~~aL~~l~~~~~~~--~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
.|+++|++++..-... ..-.-...++.|+..+.++ +.++..++++|.+++...
T Consensus 427 ~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 427 TAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp HHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence 9999999997642211 0001125677888888774 888999999999999764
No 80
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.12 E-value=5.8e-10 Score=122.26 Aligned_cols=335 Identities=14% Similarity=0.119 Sum_probs=208.1
Q ss_pred hhhHHHHHHHHHHHHHhhhChhh-----------------HHHHHhcCCchHHHHhhcc-------CCHHHHHHHHHHHH
Q 008940 8 AVNSVIRRAADAITNLAHENSSI-----------------KTRVRMEGGIPPLVELLEF-------TDTKVQRAAAGALR 63 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~-----------------~~~i~~~g~i~~L~~ll~~-------~~~~v~~~a~~~L~ 63 (548)
..++++..|+..+..++...... -.... ..+++.++..+.. ++..++..+..+|.
T Consensus 278 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~ 356 (861)
T 2bpt_A 278 PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQ 356 (861)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHH
Confidence 34688999999999888532110 01111 3456777777764 23579999999999
Q ss_pred HhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhhhcCChHHHHHH
Q 008940 64 TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSESQREA 142 (548)
Q Consensus 64 ~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a 142 (548)
.++.... ..+. ..+++.+...+.++++.+|+.++.+++.++.... ..-.... ..+++.++..+.++++.++..+
T Consensus 357 ~l~~~~~---~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a 431 (861)
T 2bpt_A 357 LFAQNCG---NHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETT 431 (861)
T ss_dssp HHHHHHG---GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHcc---HhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHH
Confidence 9986322 1111 1245666677778899999999999999987643 2212222 2478889999999999999999
Q ss_pred HHHHHHhhcCCchhH-HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc----c-hhhhHhcCChHHHHHhhcC
Q 008940 143 ALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH----N-QAGIAHNGGLVPLLKLLDS 216 (548)
Q Consensus 143 ~~~L~~l~~~~~~~~-~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~----~-~~~~~~~~~l~~L~~ll~~ 216 (548)
+++++.++....... ..-.-..+++.++..+.++ +.++..++++|.+++.... . -.... ...++.++..+.+
T Consensus 432 ~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~ 509 (861)
T 2bpt_A 432 AWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANR 509 (861)
T ss_dssp HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhC
Confidence 999999985421100 0001124677888888776 8999999999999986432 1 11111 2345667778875
Q ss_pred CC--hhHHHHHHHHHHhcccCCcc-hHHHHHhcCcccccccchhh-------------hhhhHH---HHHHHHHHHHhhh
Q 008940 217 KN--GSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQDGEFIV-------------QATKDC---VAKTLKRLEEKIH 277 (548)
Q Consensus 217 ~~--~~v~~~a~~~L~~l~~~~~~-~~~~~~~g~i~~L~~~~~~~-------------~~~~~~---~~~~~~~~~~~~~ 277 (548)
.+ +.++..++.++..++..... ...... ..++.+.+..... ...... ...++..+.....
T Consensus 510 ~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 588 (861)
T 2bpt_A 510 IDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP 588 (861)
T ss_dssp SCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred cCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 43 78899999999999753322 111111 1222222111000 000111 1122222222211
Q ss_pred -------hhhhHHHHHHHHhhhh-hhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940 278 -------GRVLNHLLYLMRVAEK-GVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 349 (548)
Q Consensus 278 -------~~~~~~L~~ll~~~~~-~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 349 (548)
..+++.++..+.+.+. .++..++.+++.++........-.-...++.|...+.++++.++..++.++..++.
T Consensus 589 ~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 589 SSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp GGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 2356667777777666 89999999999987542211111112467888888888888999999999998887
Q ss_pred hc
Q 008940 350 KA 351 (548)
Q Consensus 350 ~~ 351 (548)
..
T Consensus 669 ~~ 670 (861)
T 2bpt_A 669 SL 670 (861)
T ss_dssp HT
T ss_pred Hh
Confidence 53
No 81
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=99.11 E-value=2.7e-11 Score=101.72 Aligned_cols=108 Identities=15% Similarity=0.279 Sum_probs=60.7
Q ss_pred EEEEe-CCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCc------------------
Q 008940 383 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS------------------ 443 (548)
Q Consensus 383 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~------------------ 443 (548)
+++.. +|+.|.+|+.+ +..|++|++||... +....|+++++++.+++.+++|+|+..
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~---~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 81 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDD---CVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDD 81 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CCTTSCHHHHHHHHHC-----------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHcc---CCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccc
Confidence 44443 68999999998 88999999999764 234589999999999999999999876
Q ss_pred ---------cccchHhHHHHHHHHHHhChHhHHHHHHHHHHhcC---CHhhHHHHHHHHHHcC
Q 008940 444 ---------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSEAFH 494 (548)
Q Consensus 444 ---------~~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l---~~~n~~~~~~~a~~~~ 494 (548)
+.++.+++.+|+.||++|+++.|.++|+.++...+ +++.+-.++.....+.
T Consensus 82 ~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t 144 (160)
T 2p1m_A 82 DLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFT 144 (160)
T ss_dssp -------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCC
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCC
Confidence 35677889999999999999999999999999888 6666666555544443
No 82
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.10 E-value=2.8e-10 Score=120.21 Aligned_cols=194 Identities=15% Similarity=0.164 Sum_probs=152.2
Q ss_pred CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH-HHhccCChHHHHHHHHHHHHhhcC-ChhHH
Q 008940 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHS-SPNIK 115 (548)
Q Consensus 38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv-~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~ 115 (548)
..+.++++.|+++++..|..|+.+|.+++. ++..+..+...|++..++ .+|.+++.++|..|+++|+||+.+ .++.+
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 456678888999999999999999999997 789999999999988765 578899999999999999999865 47888
Q ss_pred HHHHhcCChHHHHHhhhcCC---------------------hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC
Q 008940 116 KEVLAAGALQPVIGLLSSCC---------------------SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174 (548)
Q Consensus 116 ~~~~~~g~i~~L~~ll~~~~---------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~ 174 (548)
..+...|+++.|..++.... .++...++.+|++||..+......+...+.++.|+..|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 99999999999999886410 124456778999999888888888888899999999985
Q ss_pred C---CCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHH---HHHhhcCCChhHHHHHHHHHHhcc
Q 008940 175 S---PDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVP---LLKLLDSKNGSLQHNAAFALYGLA 233 (548)
Q Consensus 175 ~---~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~---L~~ll~~~~~~v~~~a~~~L~~l~ 233 (548)
+ ...+++..++.+|.+++.+... ...+...+.... +..+ ...+...+..++++|.|+.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence 4 2467999999999999987655 344445444332 2222 2334445667888888873
No 83
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.09 E-value=8.4e-10 Score=120.97 Aligned_cols=335 Identities=13% Similarity=0.146 Sum_probs=205.4
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcc-----------------
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE----------------- 71 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----------------- 71 (548)
.++++..++.+|..++...+..-.......+++.+...+.+.+..++..|+..+..++.....
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHH
Confidence 467888999999999864433211122125566677778888899999999999998863110
Q ss_pred hhhHhhhcCChHHHHHHhcc-------CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHH
Q 008940 72 NKNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 144 (548)
Q Consensus 72 ~~~~~~~~g~i~~Lv~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~ 144 (548)
...... ..+++.++..+.+ +++.++..+..+|..++...++ .+. ...++.+...+.+.+..+++.+++
T Consensus 317 ~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~~a~~ 391 (861)
T 2bpt_A 317 FALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HIL-EPVLEFVEQNITADNWRNREAAVM 391 (861)
T ss_dssp HHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH---hHH-HHHHHHHHHHcCCCChhHHHHHHH
Confidence 001111 2356777777763 2357999999999999753221 111 134667777778888999999999
Q ss_pred HHHHhhcCCc-hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch--hhhHhcCChHHHHHhhcCCChhH
Q 008940 145 LLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ--AGIAHNGGLVPLLKLLDSKNGSL 221 (548)
Q Consensus 145 ~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~v 221 (548)
+++.++.+.. ....... ..+++.++..+.++++.+|..+++++++++...... ..-.-...++.++..+.+. +.+
T Consensus 392 ~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v 469 (861)
T 2bpt_A 392 AFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKV 469 (861)
T ss_dssp HHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHH
T ss_pred HHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHH
Confidence 9999986543 2222222 357888999999999999999999999998543211 0001123466777777765 899
Q ss_pred HHHHHHHHHhcccCC-----cchHHHHHhcCcccccccchhhh---hhhHHHHHHHHHHHHhhh-------hhhhHHHHH
Q 008940 222 QHNAAFALYGLADNE-----DNVADFIRVGGVQKLQDGEFIVQ---ATKDCVAKTLKRLEEKIH-------GRVLNHLLY 286 (548)
Q Consensus 222 ~~~a~~~L~~l~~~~-----~~~~~~~~~g~i~~L~~~~~~~~---~~~~~~~~~~~~~~~~~~-------~~~~~~L~~ 286 (548)
+..++++|.+++..- ....... ..+++.|.......+ ........++..+..... ..+++.++.
T Consensus 470 ~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~ 548 (861)
T 2bpt_A 470 ATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMD 548 (861)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHH
Confidence 999999999987531 1111111 111222221111001 011112222222222211 134555666
Q ss_pred HHHhh---------------hhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCC-ccchhhHHHHHHHhhh
Q 008940 287 LMRVA---------------EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNP-KQQLDGAVALFKLANK 350 (548)
Q Consensus 287 ll~~~---------------~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~ 350 (548)
.+... ...++..++.+|.+++..-...-.-.-...++.+.+.+++.+. .++..+..++..++..
T Consensus 549 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~ 628 (861)
T 2bpt_A 549 KLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAAS 628 (861)
T ss_dssp HHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHH
Confidence 66532 4567888999999987532211111112467778888888777 8899999999998875
Q ss_pred c
Q 008940 351 A 351 (548)
Q Consensus 351 ~ 351 (548)
.
T Consensus 629 ~ 629 (861)
T 2bpt_A 629 L 629 (861)
T ss_dssp H
T ss_pred H
Confidence 3
No 84
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.09 E-value=4.3e-10 Score=123.55 Aligned_cols=298 Identities=12% Similarity=0.047 Sum_probs=193.7
Q ss_pred HHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC--CHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhc
Q 008940 14 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLR 90 (548)
Q Consensus 14 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~ 90 (548)
..++.++..++........ -...++.|++.+.++ ++.++..++.++..++... ++..... -..+++.+...+.
T Consensus 107 ~~~~~~l~~i~~~~~~~~~---w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~ 182 (876)
T 1qgr_A 107 SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMR 182 (876)
T ss_dssp CHHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG-HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhCcccc---cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhH-HHHHHHHHHHhhc
Confidence 5666667776643111000 124567888888888 8999999999999998632 2211111 1235666777777
Q ss_pred cC--ChHHHHHHHHHHHHhhcCChhH-HHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChH
Q 008940 91 SE--DSAIHYEAVGVIGNLVHSSPNI-KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 167 (548)
Q Consensus 91 ~~--~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~ 167 (548)
++ +..+|..++.++.+++..-... .........++.+...+.+.+.+++..++.+|..++...+..........+++
T Consensus 183 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~ 262 (876)
T 1qgr_A 183 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA 262 (876)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66 6899999999999987542221 11111112567777778888899999999999999866554433334447888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCCcc----------------h--hhhH---hcCChHHHHHhhcC-------CCh
Q 008940 168 PLIEMLQSPDVQLREMSAFALGRLAQDMHN----------------Q--AGIA---HNGGLVPLLKLLDS-------KNG 219 (548)
Q Consensus 168 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----------------~--~~~~---~~~~l~~L~~ll~~-------~~~ 219 (548)
.++..+.+.++.++..++..+.+++..... + .... -...++.+++.+.. .+.
T Consensus 263 ~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~ 342 (876)
T 1qgr_A 263 ITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 342 (876)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccccccc
Confidence 888888888999999999999988754210 0 0000 01223445555532 234
Q ss_pred hHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhH
Q 008940 220 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRV 299 (548)
Q Consensus 220 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a 299 (548)
.++..+..+|..++..... ..-..+++.+...+.+.++.+|..|
T Consensus 343 ~~r~~a~~~l~~l~~~~~~------------------------------------~~~~~~l~~l~~~l~~~~~~~r~~a 386 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCCED------------------------------------DIVPHVLPFIKEHIKNPDWRYRDAA 386 (876)
T ss_dssp CHHHHHHHHHHHHHHHHGG------------------------------------GGHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcH------------------------------------hhHHHHHHHHHHHccCCChHHHHHH
Confidence 5666666666665432110 0001245556666677889999999
Q ss_pred HHHhhhccCCCc-c-ceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940 300 ALALAHLCSPDD-Q-RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352 (548)
Q Consensus 300 ~~aL~~l~~~~~-~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 352 (548)
+++++.++.+.. . -.. .-.+.++.++..+.++++.+|..|++++.+++....
T Consensus 387 ~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 387 VMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence 999999987543 1 111 113578899999999999999999999999998643
No 85
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.04 E-value=1.4e-09 Score=110.02 Aligned_cols=265 Identities=12% Similarity=0.087 Sum_probs=179.1
Q ss_pred hhHHHHHHHHHHHHHhhhC-hhhHHHHHhcCCchHHHHhhccC--CHHHHHHHHHHHHHhhccCcchhh-HhhhcCChHH
Q 008940 9 VNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPT 84 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~ 84 (548)
++.++..|+.+|..++... +..-.... ..+++.+...++++ ++.+|..|+.++.++...-.++.. .....-+++.
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~ 221 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQV 221 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 5678999999999999643 22211111 24667888888887 799999999999987642111111 0011113556
Q ss_pred HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchh--------
Q 008940 85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-------- 156 (548)
Q Consensus 85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-------- 156 (548)
+...+.+++++++..++++|..++...+..-......++++.++..+.+.+++++..++..+..++......
T Consensus 222 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~ 301 (462)
T 1ibr_B 222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAA 301 (462)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 666777889999999999999998655432111111156777788888888999999999998887431000
Q ss_pred ---------HHHHH---hcCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC
Q 008940 157 ---------KVHIV---QRGAVRPLIEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK 217 (548)
Q Consensus 157 ---------~~~~~---~~g~v~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~ 217 (548)
...+. -..++|.++..+.. ++..++..|+.+|..++...+. .+. ...++.+...+.+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~ 378 (462)
T 1ibr_B 302 EQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNP 378 (462)
T ss_dssp CSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCS
T ss_pred ccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCC
Confidence 00011 12356667677753 2457899999999999865541 222 24566677888889
Q ss_pred ChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhh
Q 008940 218 NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQR 297 (548)
Q Consensus 218 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~ 297 (548)
++.++..++.+|+.++...... .+.. .-..+++.++.++.++++.+|.
T Consensus 379 ~~~~r~aal~~l~~l~~~~~~~-------~~~~-------------------------~l~~~~~~l~~~l~d~~~~Vr~ 426 (462)
T 1ibr_B 379 DWRYRDAAVMAFGCILEGPEPS-------QLKP-------------------------LVIQAMPTLIELMKDPSVVVRD 426 (462)
T ss_dssp SHHHHHHHHHHHHHTSSSSCTT-------TTCT-------------------------TTTTHHHHHHHGGGCSCHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCCcHH-------HHHH-------------------------HHHHHHHHHHHHhcCCCHHHHH
Confidence 9999999999999998643210 0000 0134788899999999999999
Q ss_pred hHHHHhhhccCC
Q 008940 298 RVALALAHLCSP 309 (548)
Q Consensus 298 ~a~~aL~~l~~~ 309 (548)
.|+++|++++..
T Consensus 427 ~a~~~l~~~~~~ 438 (462)
T 1ibr_B 427 TAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999864
No 86
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.00 E-value=4.3e-09 Score=119.68 Aligned_cols=271 Identities=14% Similarity=0.095 Sum_probs=190.6
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 119 (548)
++.|++-+.++|+.+|..|...|.+....+......-....+++.+++.+.++++.+|..|+.+|+.++...++ ..
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~-- 83 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQ-- 83 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HH--
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HH--
Confidence 45677778889999999999999887653211111111124677888889999999999999999999865443 11
Q ss_pred hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhH-----HHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhc
Q 008940 120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-----VHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQ 193 (548)
Q Consensus 120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 193 (548)
...+++.++..+.++++.+|..++.+|..++....... ..-.-..++|.|+..+. ++++.++..++.++..++.
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 12357788888888889999999999999885433220 11122457899999998 5888999999999999985
Q ss_pred CCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHH
Q 008940 194 DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 273 (548)
Q Consensus 194 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~ 273 (548)
.....-.-.....++.+...+.++++.++..++.+|..++...... + +
T Consensus 164 ~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-----~------------------------- 211 (1230)
T 1u6g_C 164 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-----F------------------------- 211 (1230)
T ss_dssp HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----------C-------------------------
T ss_pred HhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-----H-------------------------
Confidence 3221100011235666778888888999999999999998643221 0 0
Q ss_pred HhhhhhhhHHHHHHHHhh-hhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 274 EKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 274 ~~~~~~~~~~L~~ll~~~-~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
..+++.++..+.+. +..+|..++.+++.++.....+..-.-...++.+++.+.+.++.+|..++.++..++..
T Consensus 212 ----~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 212 ----VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp ----TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 12566777777664 35788899999999875322111112246889999999999999999999999998875
No 87
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.90 E-value=5.2e-09 Score=110.51 Aligned_cols=184 Identities=15% Similarity=0.100 Sum_probs=147.1
Q ss_pred hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHH-HhhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHH
Q 008940 7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV-ELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPT 84 (548)
Q Consensus 7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~-~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~ 84 (548)
+..++.|..||.+|.+++ .++..+..+...|++..++ .+|.+++.+||..|+.+|++|+.. .++....+...|++++
T Consensus 45 S~~~~~r~~A~~al~~l~-~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~ 123 (684)
T 4gmo_A 45 SPDAKSRTTAAGAIANIV-QDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTA 123 (684)
T ss_dssp SSCCSHHHHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHH-cCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHH
Confidence 355788999999999999 5889999999999998765 578889999999999999999963 4677888999999999
Q ss_pred HHHHhccCC---------------------hHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC---ChHHHH
Q 008940 85 LILMLRSED---------------------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC---CSESQR 140 (548)
Q Consensus 85 Lv~ll~~~~---------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~~~~ 140 (548)
|..+++... .++...++.+|++|+..+.+..+.+...++++.++..+.+. ..+++.
T Consensus 124 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~ 203 (684)
T 4gmo_A 124 IEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYE 203 (684)
T ss_dssp HHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHH
Confidence 998885211 13455678899999988888888888999999999988543 357999
Q ss_pred HHHHHHHHhhcCCchhHHHHHhcCChH---HHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940 141 EAALLLGQFAATDSDCKVHIVQRGAVR---PLIEMLQSPDVQLREMSAFALGRLA 192 (548)
Q Consensus 141 ~a~~~L~~l~~~~~~~~~~~~~~g~v~---~L~~ll~~~~~~v~~~a~~~L~~l~ 192 (548)
.++.+|..++.+++.....+.+.+... .++.+.++ +...+..+++.|.|+.
T Consensus 204 ~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 204 EAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence 999999999998888888787766543 33333333 3345777889999975
No 88
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.87 E-value=8.2e-08 Score=100.01 Aligned_cols=290 Identities=13% Similarity=0.087 Sum_probs=194.3
Q ss_pred CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 117 (548)
Q Consensus 38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 117 (548)
.+....++++.+++...+..+.-++..++..+++.... ++..+.+-+.++++.++..|+++|+++.. ++..+
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~- 145 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGS--REMAE- 145 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-
Confidence 35677888999999999999999999999765543322 35567777889999999999999999953 44322
Q ss_pred HHhcCChHHHHHhh--hcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940 118 VLAAGALQPVIGLL--SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 195 (548)
Q Consensus 118 ~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 195 (548)
..++.+.+++ .+.++-+++.|+.++.++...+++.. ...+.++.+..+|.+.++.++..|+.++..++...
T Consensus 146 ----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 146 ----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp ----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 4678899999 88899999999999999987655432 22489999999999999999999999999998654
Q ss_pred cchhhhHhcCChHHHH----HhhcCC-------------ChhHHHHHHHHHHhcccCC--cchHHHHHhcCcccccccch
Q 008940 196 HNQAGIAHNGGLVPLL----KLLDSK-------------NGSLQHNAAFALYGLADNE--DNVADFIRVGGVQKLQDGEF 256 (548)
Q Consensus 196 ~~~~~~~~~~~l~~L~----~ll~~~-------------~~~v~~~a~~~L~~l~~~~--~~~~~~~~~g~i~~L~~~~~ 256 (548)
+.. + ...++.++ +++..+ ++-.+...+..|..++..+ +....+.+ .++.++....
T Consensus 219 ~~~--~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~ 292 (621)
T 2vgl_A 219 PEE--F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQ 292 (621)
T ss_dssp HHH--H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHH
T ss_pred hHH--H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhc
Confidence 321 1 12233333 333221 5678888888888887532 22222221 1111110000
Q ss_pred ------hhhh---hhHHHHHHHHHHHHhh-----hhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCch
Q 008940 257 ------IVQA---TKDCVAKTLKRLEEKI-----HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL 322 (548)
Q Consensus 257 ------~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i 322 (548)
..+. .....-++...+-... -..++..|..++.++++++|..|+.+|..++........+ ....
T Consensus 293 ~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~--~~~~ 370 (621)
T 2vgl_A 293 EPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV--KTHI 370 (621)
T ss_dssp SCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--HTTH
T ss_pred cCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--HHHH
Confidence 0000 0011111221111111 1236677778888889999999999999998654211112 2346
Q ss_pred HHHHHhhc-CCCCccchhhHHHHHHHhhh
Q 008940 323 ELLLGLLG-STNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 323 ~~L~~ll~-~~~~~v~~~a~~~L~~l~~~ 350 (548)
..++..+. +++..++..+...|..++..
T Consensus 371 ~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 371 ETVINALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence 77778888 88888999999999999865
No 89
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.84 E-value=1.6e-07 Score=80.76 Aligned_cols=187 Identities=20% Similarity=0.155 Sum_probs=148.4
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 118 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 118 (548)
.+..|..+|.+.|+.++..++.+|..+...-+.......-...++.++.++.++|..+...|+++|..|-.+.+-..+.+
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 45678999999999999999999999997433433333334589999999999999999999999999987765433333
Q ss_pred HhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch
Q 008940 119 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 198 (548)
Q Consensus 119 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 198 (548)
.. .+..+..++.++++-.+..++..++.+-.. ...+ +++..+..++.+.+++++..+..+|.+++......
T Consensus 114 ~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~-~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 114 LK--AAKTLVSLLESPDDMMRIETIDVLSKLQPL-EDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBS-CCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcc-cchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 33 466888889999999999999999999322 2222 36688999999999999999999999999765443
Q ss_pred hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940 199 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 236 (548)
Q Consensus 199 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 236 (548)
..+ .+.+..+-.++++.|+.++..|+.++..+...+
T Consensus 185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 322 246667889999999999999999999997754
No 90
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.77 E-value=2.2e-07 Score=90.00 Aligned_cols=312 Identities=14% Similarity=0.172 Sum_probs=193.5
Q ss_pred cCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCc---chhhHhhhcCC-hHHHHH-HhccCChHHHHHHHHHHHHhhcC
Q 008940 37 EGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKND---ENKNQIVECNA-LPTLIL-MLRSEDSAIHYEAVGVIGNLVHS 110 (548)
Q Consensus 37 ~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~g~-i~~Lv~-ll~~~~~~v~~~a~~~L~~l~~~ 110 (548)
..++..++.+|+. .+.++....+..+..+...++ .....+.+..- ...+.. ++..+++-....+..++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 3456788898875 568899999999999988655 33333333322 222333 33344455556666666666433
Q ss_pred ChhHHHHHHhcCChH--HHHHhhhcC-ChHHHHHHHHHHHHhhcCCchhHHHHHhcC--ChHHHHHhhCC----------
Q 008940 111 SPNIKKEVLAAGALQ--PVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRG--AVRPLIEMLQS---------- 175 (548)
Q Consensus 111 ~~~~~~~~~~~g~i~--~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~v~~L~~ll~~---------- 175 (548)
.+...+.. ...+. .++..+... +...+..++.+|..|... +..|..+.+.+ .++.++..++.
T Consensus 156 ~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 156 GLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred CCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 22211110 11122 345555553 345566788889888765 67787776532 46666543321
Q ss_pred -----C--CHHHHHHHHHHHHHhhcCCcchhhhHhcCCh--HHHHHhhcC-CChhHHHHHHHHHHhcccCCc-c----hH
Q 008940 176 -----P--DVQLREMSAFALGRLAQDMHNQAGIAHNGGL--VPLLKLLDS-KNGSLQHNAAFALYGLADNED-N----VA 240 (548)
Q Consensus 176 -----~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l--~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~-~----~~ 240 (548)
+ ..+++..++.++|-|+..++....+...+.. +.|+..++. ..+++.+-++.+|.|+..... . ..
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 1 3467899999999999988776666655532 345666664 468899999999999976541 1 12
Q ss_pred H-HHHhcCcccccc---cchh---hhhhh--------------------------------------HHHHHHHHHHHHh
Q 008940 241 D-FIRVGGVQKLQD---GEFI---VQATK--------------------------------------DCVAKTLKRLEEK 275 (548)
Q Consensus 241 ~-~~~~g~i~~L~~---~~~~---~~~~~--------------------------------------~~~~~~~~~~~~~ 275 (548)
. +...++++.+.. ..+. +..+- .-|.++..++.+
T Consensus 313 ~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e- 391 (480)
T 1ho8_A 313 QLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK- 391 (480)
T ss_dssp HHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS-
T ss_pred HHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh-
Confidence 2 222333332211 0010 00000 001111111111
Q ss_pred hhhhhhHHHHHHHHh----------hhhhhhhhHHHHhhhccC-CCccceeeecCCchHHHHHhhcCCCCccchhhHHHH
Q 008940 276 IHGRVLNHLLYLMRV----------AEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 344 (548)
Q Consensus 276 ~~~~~~~~L~~ll~~----------~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 344 (548)
-+..++..|+.+|.+ .++.+..-||.-|+.+++ .|.+|..+-+.|+-..+.+|+.++|++||..|..++
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~av 471 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKAT 471 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 223488999999984 478889999999999987 477888888889999999999999999999999999
Q ss_pred HHHhhhcc
Q 008940 345 FKLANKAT 352 (548)
Q Consensus 345 ~~l~~~~~ 352 (548)
..+..+.|
T Consensus 472 Qklm~~~~ 479 (480)
T 1ho8_A 472 QAIIGYTF 479 (480)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcC
Confidence 99876643
No 91
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.77 E-value=2.2e-07 Score=96.73 Aligned_cols=287 Identities=17% Similarity=0.215 Sum_probs=195.9
Q ss_pred hhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940 6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 85 (548)
Q Consensus 6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 85 (548)
.+.+|-++..|+-++.++.+.+|+... ..+.++.+.++|.+.++.++..|+.++..++..++........ ..++.|
T Consensus 158 ~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~-~~~~~L 233 (621)
T 2vgl_A 158 GDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVS-LAVSRL 233 (621)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHH
Confidence 355789999999999999987665332 2478899999999999999999999999999755542111111 122333
Q ss_pred HHHhccC-------------ChHHHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhhh---------cCC--hHHHH
Q 008940 86 ILMLRSE-------------DSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLLS---------SCC--SESQR 140 (548)
Q Consensus 86 v~ll~~~-------------~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~---------~~~--~~~~~ 140 (548)
-+++..+ ++-.+...+++|..++.. +++.++.+.+ .++.++..+. +.+ ..+..
T Consensus 234 ~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ 311 (621)
T 2vgl_A 234 SRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLF 311 (621)
T ss_dssp HHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHH
T ss_pred HHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHH
Confidence 3343321 567888899999998763 3455444433 3333333221 112 26778
Q ss_pred HHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhc-CCCh
Q 008940 141 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNG 219 (548)
Q Consensus 141 ~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~ 219 (548)
.++.++..+. ..++... .+++.|..++.++++.++..++.+|..++...+....+ ......++..+. +++.
T Consensus 312 ea~~~i~~l~-~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~--~~~~~~i~~~L~~d~d~ 383 (621)
T 2vgl_A 312 EAISLIIHHD-SEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV--KTHIETVINALKTERDV 383 (621)
T ss_dssp HHHHHHHHHC-CCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--HTTHHHHHHHHTTCCCH
T ss_pred HHHHHHHhcC-CcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--HHHHHHHHHHhccCCCH
Confidence 8888888884 2222222 35678888999899999999999999998765422222 245667888888 8899
Q ss_pred hHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhH
Q 008940 220 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRV 299 (548)
Q Consensus 220 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a 299 (548)
.++..++.+|..++... +.. .++..|...+.+.+.+++..+
T Consensus 384 ~Ir~~aL~lL~~l~~~~-Nv~--------------------------------------~Iv~eL~~yl~~~d~~~~~~~ 424 (621)
T 2vgl_A 384 SVRQRAVDLLYAMCDRS-NAQ--------------------------------------QIVAEMLSYLETADYSIREEI 424 (621)
T ss_dssp HHHHHHHHHHHHHCCHH-HHH--------------------------------------HHHHHHHHHHHHCCHHHHHHH
T ss_pred hHHHHHHHHHHHHcChh-hHH--------------------------------------HHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999998543 222 256677788888888899999
Q ss_pred HHHhhhccCC-CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 300 ALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 300 ~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
..+++.++.. +... .-.+..|++++......+...+...+..+...
T Consensus 425 v~~I~~la~k~~~~~-----~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~ 471 (621)
T 2vgl_A 425 VLKVAILAEKYAVDY-----TWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN 471 (621)
T ss_dssp HHHHHHHHHHHCSST-----HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHhcCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 9999888742 1111 23467778888765556767777777777654
No 92
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.76 E-value=3.6e-08 Score=74.90 Aligned_cols=79 Identities=19% Similarity=0.376 Sum_probs=67.5
Q ss_pred EEEEe-CCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCc--------------cccc
Q 008940 383 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS--------------VDVT 447 (548)
Q Consensus 383 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~--------------~~~~ 447 (548)
+++.. +|+.|.+++.+ +..|++++.|+..++ ++....|+++++++.+++.+++|+|... ..++
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd 83 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIP 83 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCC
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCC
Confidence 55555 78999999997 889999999998766 5666789999999999999999998643 2467
Q ss_pred hHhHHHHHHHHHHhCh
Q 008940 448 LDIAQDLLRAADQYLL 463 (548)
Q Consensus 448 ~~~~~~ll~~a~~~~~ 463 (548)
.+.+.+|+.||+++++
T Consensus 84 ~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 84 TEMSLELLLAADYLSI 99 (99)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 8899999999999975
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.75 E-value=3.1e-07 Score=79.00 Aligned_cols=189 Identities=14% Similarity=0.117 Sum_probs=150.7
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHH
Q 008940 80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159 (548)
Q Consensus 80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 159 (548)
+.+..|..+|.+.|+.++..++.+|..+....+.......-...++.++.++.+.+..+.-.|..+|..+..+.+-....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 46888999999999999999999999998765554444444568999999999999999999999999999877666665
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcch
Q 008940 160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 239 (548)
Q Consensus 160 ~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 239 (548)
+.. ++..+.+++.++++-++..++..++.+--....+ ..+..+.+++.+.+..++..+..++.+++...+..
T Consensus 113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 554 7788999999999999999999999993222222 23567888999999999999999999998654321
Q ss_pred HHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc
Q 008940 240 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 311 (548)
Q Consensus 240 ~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~ 311 (548)
.. + .+++..+-.++++.|+.++..|+.++-.+...+-
T Consensus 185 ~i------~-----------------------------~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi 221 (265)
T 3b2a_A 185 GH------L-----------------------------TLILDEIPSLLQNDNEFIVELALDVLEKALSFPL 221 (265)
T ss_dssp CC------G-----------------------------GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HH------H-----------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcc
Confidence 11 1 1245556688899999999999999999987643
No 94
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.73 E-value=2.3e-07 Score=105.49 Aligned_cols=303 Identities=15% Similarity=0.100 Sum_probs=197.1
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcc----------------hh
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE----------------NK 73 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----------------~~ 73 (548)
..+++.|+.++..++...++.-..+. ...++.++..+.+.++.+|..++.++..+...... ..
T Consensus 347 ~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (1230)
T 1u6g_C 347 WKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPL 425 (1230)
T ss_dssp THHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHH
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchH
Confidence 46788999999999864332222222 35678888888888899999999998877642100 01
Q ss_pred hHh--hhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCCh--HHHHHHHHHHHHh
Q 008940 74 NQI--VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQF 149 (548)
Q Consensus 74 ~~~--~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--~~~~~a~~~L~~l 149 (548)
..+ .-..+++.+.+.++++++.+|..++.+|+.++...+..-.. .-..+++.+...+.+..+ .++..++..+..+
T Consensus 426 ~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~ 504 (1230)
T 1u6g_C 426 TMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVI 504 (1230)
T ss_dssp HHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 111 11224555666688999999999999999987653321111 012457788888887764 7888888888888
Q ss_pred hcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-------hhhhHhcCChHHHHHhh--cCCChh
Q 008940 150 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-------QAGIAHNGGLVPLLKLL--DSKNGS 220 (548)
Q Consensus 150 ~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~~l~~L~~ll--~~~~~~ 220 (548)
..........-.-..+++.++..+.+.+..++..++.++..++..... .-.-.....++.++..+ .+.++.
T Consensus 505 ~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~ 584 (1230)
T 1u6g_C 505 LCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQE 584 (1230)
T ss_dssp HHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHH
T ss_pred HHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHH
Confidence 643222111112247899999999998888988899999988843111 00001123456677777 556788
Q ss_pred HHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh--hhhhhhhh
Q 008940 221 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV--AEKGVQRR 298 (548)
Q Consensus 221 v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~~~~~ 298 (548)
++..++.+++.++...... + ...++.++.++.. .++..|..
T Consensus 585 vr~~a~~~lg~L~~~~g~~-----------~--------------------------~~~~~~~l~~L~~~l~~e~~r~~ 627 (1230)
T 1u6g_C 585 VKERAISCMGQIICNLGDN-----------L--------------------------GSDLPNTLQIFLERLKNEITRLT 627 (1230)
T ss_dssp HHHHHHHHHHHHHHHTGGG-----------C--------------------------CTHHHHHHHHHHHHTTSSSHHHH
T ss_pred HHHHHHHHHHHHHHHhCch-----------h--------------------------hhhHHHHHHHHHHHhccchhHHH
Confidence 9999999999987532210 0 0123334444433 34557888
Q ss_pred HHHHhhhccCCCcc-ceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 299 VALALAHLCSPDDQ-RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 299 a~~aL~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
++.++..++..... .....-...++.|...+.+.+..+|..++.++..++...
T Consensus 628 ~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 628 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp HHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 99999988764321 111122356788888888888899999999999998865
No 95
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.72 E-value=5.3e-07 Score=85.51 Aligned_cols=246 Identities=11% Similarity=0.075 Sum_probs=161.9
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 119 (548)
...+++++.++|..++....-.+.+++...++ +. =++..|.+=++++++-+|-.|+++|+++.. ++.-+.
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e----~i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-- 139 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED----VI--IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA-- 139 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC----GG--GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH----HH--HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH--
Confidence 34567899999999999999999998874222 11 257788889999999999999999999964 333222
Q ss_pred hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchh
Q 008940 120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 199 (548)
Q Consensus 120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 199 (548)
..+.+.+.+.+.++-+++.|+.+...+....++. ++ ++++.+-+++.+.++-++.+|+.+|..+...+..
T Consensus 140 ---l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~----v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~-- 209 (355)
T 3tjz_B 140 ---IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV----VK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL-- 209 (355)
T ss_dssp ---HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----HH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--
T ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----HH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--
Confidence 4567888999999999999999999998665553 22 6899999999999999999999999999865321
Q ss_pred hhHhcCChHHHHHhhcCC---ChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhh
Q 008940 200 GIAHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 276 (548)
Q Consensus 200 ~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (548)
.+..++..+..+ ++-.+...+..+..++..++.. .
T Consensus 210 ------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~------------------------------------~ 247 (355)
T 3tjz_B 210 ------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS------------------------------------R 247 (355)
T ss_dssp ------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------------------------------
T ss_pred ------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh------------------------------------h
Confidence 233444444442 3444444455555555433100 0
Q ss_pred hhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 277 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 277 ~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
....++.+..+|++.++.|..+|+.++..+...+.. .+ ..++..|..++.++++++|..|...|..++...
T Consensus 248 ~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~--~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~ 318 (355)
T 3tjz_B 248 DSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK--EL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH 318 (355)
T ss_dssp ---------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC-------
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH--HH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC
Confidence 112445555667788899999999999998552221 11 245667778888999999999998888887653
No 96
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.70 E-value=3.1e-08 Score=74.86 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=63.0
Q ss_pred EEEEe-CCeEEEchHHHHhcccHHHHhhhcC--CCCCCCCCceecCCCCHHHHHHHHHHHhcCc-----------cccch
Q 008940 383 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIYTGS-----------VDVTL 448 (548)
Q Consensus 383 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~-----------~~~~~ 448 (548)
+++.. +|+.|.+++.+ +..|++++.|+.. .+.|+....|+++++++.+++.+++|+|... ..++.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 81 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 81 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence 34444 78999999997 8899999999974 3356666799999999999999999998643 35778
Q ss_pred HhHHHHHHHHHHhCh
Q 008940 449 DIAQDLLRAADQYLL 463 (548)
Q Consensus 449 ~~~~~ll~~a~~~~~ 463 (548)
+.+.+|+.||+++++
T Consensus 82 ~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 82 EIALELLMAANFLDC 96 (96)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999975
No 97
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.70 E-value=1.2e-07 Score=86.65 Aligned_cols=186 Identities=12% Similarity=0.085 Sum_probs=139.3
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940 41 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119 (548)
Q Consensus 41 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 119 (548)
+.+.+.+++.++..|..|+..|..+..+.+.....-. ..+++.|...+. +.+..++..|+.+++.++..-...-.. .
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-Y 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence 4588899999999999999999999875333211111 235777888884 899999999999999998532211011 1
Q ss_pred hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-ch
Q 008940 120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQ 198 (548)
Q Consensus 120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~ 198 (548)
...++|.++..+.+.+..++..+..+|.+++...+ . ..+++.+...+++.++.++..++..|..+..... ..
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 23478999999999999999999999999985432 1 1367888999999999999999999999764432 11
Q ss_pred -hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC
Q 008940 199 -AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 235 (548)
Q Consensus 199 -~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 235 (548)
..-.-...++.+..++.+.++++|..|..+++.++..
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 1111124677899999999999999999999998753
No 98
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.69 E-value=7e-07 Score=94.25 Aligned_cols=259 Identities=14% Similarity=0.092 Sum_probs=176.7
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCC--------HHHHHHHHHHHHHhhccCcchhhHhhhc
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--------TKVQRAAAGALRTLAFKNDENKNQIVEC 79 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--------~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 79 (548)
.++.++..|+-+|.-+..+... . ++..|...|.+++ +.++..|+..|+....++.. .
T Consensus 407 ~~~~ik~GAllaLGli~ag~~~--~------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------e 471 (963)
T 4ady_A 407 SSRFIKGGSLYGLGLIYAGFGR--D------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------I 471 (963)
T ss_dssp SCHHHHHHHHHHHHHHTTTTTH--H------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------H
T ss_pred CcHHHHHHHHHHHHHhcCCCcH--H------HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------H
Confidence 3467888888888888744321 1 3456777776655 67899999999987654221 1
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh-hcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940 80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKV 158 (548)
Q Consensus 80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~ 158 (548)
.+++.|.+++.+++..++..|+.+|+.+..+..+. .++..|++.+ .+.+..+++.++.+|+.+..+.++
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e--- 541 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE--- 541 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---
Confidence 25777888898888878888998998874332221 1244555543 455688999999999988766544
Q ss_pred HHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhh-cCCChhHHHHHHHHHHhcccCC
Q 008940 159 HIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNE 236 (548)
Q Consensus 159 ~~~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~ 236 (548)
.++.++..|. +.++.+|..++.+++--.....+.. .++.|+..+ .+.++.+++.|+.+|+.+....
T Consensus 542 ------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 542 ------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp ------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred ------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence 4566666665 5788889888888876555544432 355455444 4567889999999999876443
Q ss_pred cchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHH-HHHhhhhhhhhhHHHHhhhccCCCcccee
Q 008940 237 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY-LMRVAEKGVQRRVALALAHLCSPDDQRTI 315 (548)
Q Consensus 237 ~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~~~~~a~~aL~~l~~~~~~~~~ 315 (548)
+. .+++++. ++++.++.+|..|+.+|+.++.+....
T Consensus 610 ~e-----------------------------------------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-- 646 (963)
T 4ady_A 610 YT-----------------------------------------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-- 646 (963)
T ss_dssp CS-----------------------------------------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--
T ss_pred HH-----------------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--
Confidence 21 1233344 334578888888888888887655432
Q ss_pred eecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 316 FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 316 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
.++..|..+.++++..||..|+.+|..+...
T Consensus 647 ----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 647 ----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred ----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 3567788888888888888888888888654
No 99
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=1.6e-08 Score=78.33 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=51.5
Q ss_pred HhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHHHHH
Q 008940 475 AQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIH 531 (548)
Q Consensus 475 ~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~~~ 531 (548)
.+.++++||+.++.+|+.|+++.|.+.|..||.+||.++.++++|.+||.+.+.+++
T Consensus 5 ~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL 61 (105)
T 2eqx_A 5 SSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDII 61 (105)
T ss_dssp CCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999776554444
No 100
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.60 E-value=2.3e-07 Score=78.22 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=75.0
Q ss_pred cEEEEe-CCeEEEchHHHHhcccHHHHhhhcCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCc-------------
Q 008940 382 DVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGS------------- 443 (548)
Q Consensus 382 Dv~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Yt~~------------- 443 (548)
-+++.. +|+.|.+++.+ +..|.+++.|+..... +.....|++++++..++..+++|+|...
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~ 86 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSR 86 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccccc
Confidence 345544 58999999997 7789999999975322 2233689999999999999999997643
Q ss_pred ------------cccchHhHHHHHHHHHHhChHhHHHHHHHHHHhcCC
Q 008940 444 ------------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS 479 (548)
Q Consensus 444 ------------~~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~ 479 (548)
+.++.+.+.+|+.||++|+++.|..+|+..+...+.
T Consensus 87 ~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 87 KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 134 (169)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence 235668899999999999999999999998855443
No 101
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.59 E-value=7.1e-09 Score=84.71 Aligned_cols=121 Identities=22% Similarity=0.221 Sum_probs=94.1
Q ss_pred cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH
Q 008940 37 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 116 (548)
Q Consensus 37 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 116 (548)
...++.++.+|+++++.+|..|+.+|+.+... .++.|+.+|+++++.+|..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence 46678899999999999999999998877531 26889999999999999999999999852 2
Q ss_pred HHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 008940 117 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 191 (548)
Q Consensus 117 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l 191 (548)
..++.|..++.++++.++..++++|.++. + .+.++.|..+++++++.++..++.+|.++
T Consensus 73 -----~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~---------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 -----RAVEPLIKLLEDDSGFVRSGAARSLEQIG--G---------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHCCTHHHHHHHHHHHHHC--S---------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c---------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 24889999999999999999999999984 1 13578899999999999999999988753
No 102
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.56 E-value=4.5e-07 Score=70.10 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=77.2
Q ss_pred cEEEEeCCeEEEchHHHHhccc-HHHHhhhcCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCccccchHh-HHHHH
Q 008940 382 DVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI-AQDLL 455 (548)
Q Consensus 382 Dv~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~ll 455 (548)
-|.+.|||..|..++..|.... .+|..||.++.. ....+.+-+ |-+|..|+.+|+|+.+|++.++.+. ...++
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~ 85 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVL 85 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHHH
Confidence 5788999999999999999875 478999876521 123445666 5799999999999999999876543 57899
Q ss_pred HHHHHhChHhHHHHHHHHHHh
Q 008940 456 RAADQYLLEGLKRLCEYTIAQ 476 (548)
Q Consensus 456 ~~a~~~~~~~l~~~c~~~l~~ 476 (548)
+-|.+|+++.|++.|++.+.+
T Consensus 86 ~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 86 EEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhc
Confidence 999999999999999988764
No 103
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.56 E-value=8.9e-07 Score=84.00 Aligned_cols=242 Identities=14% Similarity=0.020 Sum_probs=134.4
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 119 (548)
+..|.+-++++++-+|-.|+++|.++.. ++-.+. +.+.+-+.+.+.++-+|..|+-+..++....++..
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v---- 174 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV---- 174 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----
Confidence 4566777788999999999999999985 443332 45667788889999999999999999988877743
Q ss_pred hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCC---CHHHHHHHHHHHHHhhcCCc
Q 008940 120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP---DVQLREMSAFALGRLAQDMH 196 (548)
Q Consensus 120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~ 196 (548)
.++++.+-+++.+.++-+...|..+|..+...+.. .+..++..+... ++-.+...+..+..++..++
T Consensus 175 -~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~ 244 (355)
T 3tjz_B 175 -KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED 244 (355)
T ss_dssp -HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----
T ss_pred -HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc
Confidence 26899999999999999999999999999754422 223344444332 34444444555545443321
Q ss_pred chhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhh
Q 008940 197 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 276 (548)
Q Consensus 197 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (548)
. -.....++.+...|++.++.|...|+.++..+...+.. .+
T Consensus 245 ~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~--~~---------------------------------- 285 (355)
T 3tjz_B 245 G---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK--EL---------------------------------- 285 (355)
T ss_dssp ---------------CCCCCSSHHHHHHHHHHHTC---------------------------------------------
T ss_pred h---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH--HH----------------------------------
Confidence 1 11234566788888999999999999999998653211 00
Q ss_pred hhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHH
Q 008940 277 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 346 (548)
Q Consensus 277 ~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 346 (548)
..++..|..++.++++.+|..|++.|..++...+..- . ..-..+.+++.++|..+...|..+|.+
T Consensus 286 -~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v--~--~~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 286 -APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV--T--ACNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp ---CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred -HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH--H--HHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 1134455577888999999999999999876543221 1 134457788999999998888777665
No 104
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.55 E-value=3.7e-07 Score=83.30 Aligned_cols=177 Identities=16% Similarity=0.217 Sum_probs=130.7
Q ss_pred hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940 8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 86 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 86 (548)
.+...|..|+..|..+....+....... ...++.|...+. +.+..++..|+.+++.++..-........ ..+++.++
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~-~~ilp~ll 104 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA-SACVPSLL 104 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHH
Confidence 3457789999999999866333211000 134567777884 88999999999999999963211111222 23788999
Q ss_pred HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCC-ch--hHHHHHhc
Q 008940 87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SD--CKVHIVQR 163 (548)
Q Consensus 87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~--~~~~~~~~ 163 (548)
..+.+++..+|..+..+|..++...+ . ..+++.+...+++.++.++..++.+|..+.... +. ....+ .
T Consensus 105 ~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~ 175 (242)
T 2qk2_A 105 EKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--K 175 (242)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--H
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--H
Confidence 99999999999999999999976432 1 125778889999999999999999999965443 22 11222 3
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940 164 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 195 (548)
Q Consensus 164 g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 195 (548)
.+++.+..++.+.++++|..|..+++.++..-
T Consensus 176 ~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 176 LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 58899999999999999999999999998543
No 105
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.55 E-value=3.9e-06 Score=69.01 Aligned_cols=215 Identities=18% Similarity=0.184 Sum_probs=162.9
Q ss_pred hcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCchh
Q 008940 78 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDC 156 (548)
Q Consensus 78 ~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~ 156 (548)
+..++..++.+|.++-+.++..|+.++..++...++..+.+ +..|+.+++. ..-......+.+++.++...|+.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 34578899999999999999999999999998888876554 3466666554 44556677888999998665554
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 236 (548)
Q Consensus 157 ~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 236 (548)
.. +++|.+..-.+-+++.++.....+|..++...+.-. .+.+..+..++.+++..-+..|+..+..+..+.
T Consensus 105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~----~~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 32 577888888888999999999999999986654321 134566889999988777778888888887654
Q ss_pred cchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc-ccee
Q 008940 237 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTI 315 (548)
Q Consensus 237 ~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~-~~~~ 315 (548)
.. .-..++|+|..+|.+.+.-+|..|..+|.+++...+ .|+.
T Consensus 176 ~~-------------------------------------yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki 218 (253)
T 2db0_A 176 FK-------------------------------------YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV 218 (253)
T ss_dssp HH-------------------------------------HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred cc-------------------------------------ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH
Confidence 21 113478999999999999999999999999987543 4433
Q ss_pred eecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940 316 FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 349 (548)
Q Consensus 316 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 349 (548)
+...++=+.+.+..++...-.+|..++-
T Consensus 219 ------i~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 219 ------VIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp ------HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 3344555667777788887777777753
No 106
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.2e-06 Score=79.91 Aligned_cols=192 Identities=7% Similarity=0.025 Sum_probs=138.1
Q ss_pred HHHHhhccCCHHHHHHHHHHHHH-hhccCcchhhHhhh-cCChHHHHHHh-ccCChHHHHHHHHHHHHhhcCCh--hHHH
Q 008940 42 PLVELLEFTDTKVQRAAAGALRT-LAFKNDENKNQIVE-CNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSP--NIKK 116 (548)
Q Consensus 42 ~L~~ll~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~Lv~ll-~~~~~~v~~~a~~~L~~l~~~~~--~~~~ 116 (548)
.+.+.+++.++..|..|+..|.. ++.++++....-.+ ..+++.|.+.+ ++.+..++..|+.+|+.++.+-. ....
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45677889999999999999999 88644432210111 13577788888 68899999999999999985321 1110
Q ss_pred HHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 008940 117 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 196 (548)
Q Consensus 117 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 196 (548)
. ....++|.++..+.+....++..+..++..++...+.......-..+++.|...++++++.+++.++.+|..++....
T Consensus 100 ~-y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 D-YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp H-HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred H-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 1 112368899999999889999999999988885432110000011366788889999999999999999999996554
Q ss_pred ch-hhh--Hh-cCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940 197 NQ-AGI--AH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 197 ~~-~~~--~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 234 (548)
.. ..+ .- ...++.+.+++.+.++++|..|..+++.++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 31 111 12 4677889999999999999999999998864
No 107
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.50 E-value=1.2e-08 Score=83.29 Aligned_cols=120 Identities=17% Similarity=0.157 Sum_probs=92.5
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHH
Q 008940 163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 242 (548)
Q Consensus 163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 242 (548)
...++.+..+|+++++.+|..|+++|+++.. ..++.|..+++++++.++..++++|+++...
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~------- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE------- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCH-------
Confidence 4577889999999999999999888887632 1268899999999999999999999998631
Q ss_pred HHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCch
Q 008940 243 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL 322 (548)
Q Consensus 243 ~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i 322 (548)
..++.|+.+++++++.+|..|+++|+++.. ...+
T Consensus 73 ------------------------------------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~ 106 (131)
T 1te4_A 73 ------------------------------------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVR 106 (131)
T ss_dssp ------------------------------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHH
T ss_pred ------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHH
Confidence 146788888999999999999999998852 3568
Q ss_pred HHHHHhhcCCCCccchhhHHHHHH
Q 008940 323 ELLLGLLGSTNPKQQLDGAVALFK 346 (548)
Q Consensus 323 ~~L~~ll~~~~~~v~~~a~~~L~~ 346 (548)
+.|..+++++++.+|..|+.+|.+
T Consensus 107 ~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 107 AAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 108
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.39 E-value=2.8e-05 Score=64.03 Aligned_cols=182 Identities=18% Similarity=0.198 Sum_probs=139.8
Q ss_pred hcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChhH
Q 008940 36 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNI 114 (548)
Q Consensus 36 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~~ 114 (548)
+...+..++.+|.++-+.||..|+..+..++..-++..+.+ +..|+.+++ ++.-.+-....++++.++...|+.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 34567788999998889999999999999998666655443 445666665 556667677889999999887775
Q ss_pred HHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 115 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 194 (548)
-+. .+|.+..=..-.+++++.+...+|..++..+|.... +++.-+..++.++|..=+..++..+..+..+
T Consensus 105 v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 105 VKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp HHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred HHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 332 466777767778999999999999999977765433 4667899999998877777777777766543
Q ss_pred CcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940 195 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 236 (548)
Q Consensus 195 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 236 (548)
. ... -...+|.|..+|.+++.-++..+..+|.+++...
T Consensus 175 ~---~~y-v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n 212 (253)
T 2db0_A 175 S---FKY-VNPFLPRIINLLHDGDEIVRASAVEALVHLATLN 212 (253)
T ss_dssp T---HHH-HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC
T ss_pred C---ccc-cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC
Confidence 2 222 2256888999999999999999999999998744
No 109
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.34 E-value=4.2e-06 Score=76.19 Aligned_cols=185 Identities=8% Similarity=0.056 Sum_probs=129.1
Q ss_pred hhHHHHHHHHHHHH-HhhhChhhHHHHHh-cCCchHHHHhh-ccCCHHHHHHHHHHHHHhhccCc-chhh-HhhhcCChH
Q 008940 9 VNSVIRRAADAITN-LAHENSSIKTRVRM-EGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKND-ENKN-QIVECNALP 83 (548)
Q Consensus 9 ~~~~~~~a~~~L~~-l~~~~~~~~~~i~~-~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~-~~~~-~~~~~g~i~ 83 (548)
....|..|+..|.. +..+.+.......+ ...+..|.+.+ ++.+..++..|+.+|+.++.+-. .... .... -+++
T Consensus 29 ~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-~llp 107 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS-LVFT 107 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH-HHHH
Confidence 34668889999999 87554432210001 12356677778 68899999999999999996422 1111 2222 2688
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH---HH
Q 008940 84 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV---HI 160 (548)
Q Consensus 84 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~ 160 (548)
.++..+++....++..+..++-.++...+.......-...++.+...+++.++.++..++.+|..++...+.... ..
T Consensus 108 ~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~ 187 (249)
T 2qk1_A 108 PLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRY 187 (249)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence 899999999999999999998888753311000000012567888889999999999999999999865443111 12
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940 161 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 161 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 194 (548)
+...++|.+..++.+.++++|..|..+++.++..
T Consensus 188 l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 188 LKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 2257999999999999999999999999999743
No 110
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.32 E-value=1.4e-06 Score=67.41 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=62.3
Q ss_pred EEEE-eCCeEEEchHHHHhcccHHHHhhhcC--CCCCCCCCceecCCCCHHHHHHHHHHHhcCc-----------cccch
Q 008940 383 VTFL-VEGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIYTGS-----------VDVTL 448 (548)
Q Consensus 383 v~~~-~~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~-----------~~~~~ 448 (548)
+++. -+|..|.+++.+ +..|+.++.|+.. .+.|+....|++++++..+++.+++|+|... ..++.
T Consensus 19 v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 97 (112)
T 1vcb_B 19 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 97 (112)
T ss_dssp EEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCH
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCH
Confidence 5555 368999999994 6799999999974 3455556789999999999999999997643 35778
Q ss_pred HhHHHHHHHHHHhCh
Q 008940 449 DIAQDLLRAADQYLL 463 (548)
Q Consensus 449 ~~~~~ll~~a~~~~~ 463 (548)
+.+.+|+.||++|++
T Consensus 98 ~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 98 EIALELLMAANFLDC 112 (112)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999975
No 111
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.25 E-value=0.00012 Score=77.56 Aligned_cols=259 Identities=15% Similarity=0.076 Sum_probs=166.3
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhc--cCcchhhHhhhcCChHHHHH
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF--KNDENKNQIVECNALPTLIL 87 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~Lv~ 87 (548)
+.++..|+-.|.-..-+.. . ..+++.|..++.+++..++..|+.+|+.+-. ++.+ ++..|+.
T Consensus 451 ~~ir~gAaLGLGla~~GS~-~------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~---------ai~~LL~ 514 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSA-N------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE---------AIHDMFT 514 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCC-C------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-C------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH---------HHHHHHH
Confidence 4566666666666542211 0 1234567888888777778888888887733 2222 3455555
Q ss_pred Hh-ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh-cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940 88 ML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGA 165 (548)
Q Consensus 88 ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 165 (548)
.+ .+.+..+++.++..|+.+..+.++ .++.+++.|. +.++-++..++.+++.-+.+. .+. ..
T Consensus 515 ~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGT-Gn~------~a 578 (963)
T 4ady_A 515 YSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGT-GNN------SA 578 (963)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS-CCH------HH
T ss_pred HHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC-CCH------HH
Confidence 44 456889999999999998766555 4677777775 466778888888776554442 222 13
Q ss_pred hHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHh-hcCCChhHHHHHHHHHHhcccCCcchHHHH
Q 008940 166 VRPLIEML-QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL-LDSKNGSLQHNAAFALYGLADNEDNVADFI 243 (548)
Q Consensus 166 v~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 243 (548)
++.|+..+ .+.+..+|..|+.+|+.+....+ ..++.++.+ +++.++.+|..++.+|+.++......
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~---- 646 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ---- 646 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH----
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH----
Confidence 45455554 35677899999999999876543 245566654 45688999999999999997654332
Q ss_pred HhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchH
Q 008940 244 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLE 323 (548)
Q Consensus 244 ~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~ 323 (548)
.++..|..++++.+..||..|+.+|+.+..+..+...-.-.+...
T Consensus 647 -----------------------------------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~ 691 (963)
T 4ady_A 647 -----------------------------------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINK 691 (963)
T ss_dssp -----------------------------------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHH
T ss_pred -----------------------------------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Confidence 245666777788999999999999999976543321000012334
Q ss_pred HHHHhhcC--CCCccchhhHHHHHHH
Q 008940 324 LLLGLLGS--TNPKQQLDGAVALFKL 347 (548)
Q Consensus 324 ~L~~ll~~--~~~~v~~~a~~~L~~l 347 (548)
.|.....+ .++..+..+..+.+-+
T Consensus 692 ~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 692 NFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHH
Confidence 44555543 3344555555444444
No 112
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.10 E-value=9.3e-05 Score=68.20 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=124.8
Q ss_pred hHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHh
Q 008940 41 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 120 (548)
Q Consensus 41 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 120 (548)
..+++.|.+++...+..++..|..+-..+......+++.+|+..|+....+.+...+..++++|.++..........+..
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 35677777888888999999999954457899999999999999999999999999999999999998765555444445
Q ss_pred cCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh--------c--CChHHHHHhhC---CCCHHHHHHHHHH
Q 008940 121 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--------R--GAVRPLIEMLQ---SPDVQLREMSAFA 187 (548)
Q Consensus 121 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------~--g~v~~L~~ll~---~~~~~v~~~a~~~ 187 (548)
...|..+..++.+....+.+.|+..|..++..++.+...+.+ . .-++.|+.+|+ +.+.+++.++...
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 678899999999888899999999999998776544443322 1 24778999997 6788999998877
Q ss_pred HHHhhcCCc
Q 008940 188 LGRLAQDMH 196 (548)
Q Consensus 188 L~~l~~~~~ 196 (548)
+..+....+
T Consensus 281 IN~lL~~ap 289 (339)
T 3dad_A 281 INKTLAALP 289 (339)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHhcCC
Confidence 776665544
No 113
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.92 E-value=0.00041 Score=67.40 Aligned_cols=220 Identities=15% Similarity=0.204 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhcCC--chHHHHhhcc---------------C--CHHHHHHHHHHHHHhhccCcc
Q 008940 11 SVIRRAADAITNLAHENSSIKTRVRMEGG--IPPLVELLEF---------------T--DTKVQRAAAGALRTLAFKNDE 71 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~--i~~L~~ll~~---------------~--~~~v~~~a~~~L~~l~~~~~~ 71 (548)
+.+.-++.+|..+. ..++.|..+.+.++ ++.++..++. + ..+++..++-+++.++. +++
T Consensus 183 ~~~~i~v~~L~~Ll-~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~ 260 (480)
T 1ho8_A 183 DTCYVCIRLLQELA-VIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPV 260 (480)
T ss_dssp HHHHHHHHHHHHHH-TSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHH
T ss_pred chHHHHHHHHHHHh-cchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHc-CHH
Confidence 33556888888888 56888887765543 5666544331 1 36778999999999998 577
Q ss_pred hhhHhhhcCCh--HHHHHHhc-cCChHHHHHHHHHHHHhhcCCh----h-HHHHHHhcCChHHHHHhhhc---CChHHHH
Q 008940 72 NKNQIVECNAL--PTLILMLR-SEDSAIHYEAVGVIGNLVHSSP----N-IKKEVLAAGALQPVIGLLSS---CCSESQR 140 (548)
Q Consensus 72 ~~~~~~~~g~i--~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~----~-~~~~~~~~g~i~~L~~ll~~---~~~~~~~ 140 (548)
..+.+...++. ..|+..++ +..+.+.+.++.+|.|+....+ . ..+.++..++ +.+++.|+. .|+++..
T Consensus 261 ~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~e 339 (480)
T 1ho8_A 261 FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQ 339 (480)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHH
Confidence 77777766643 56667676 4578899999999999987652 1 2223333444 445555544 3454443
Q ss_pred HHHHH-------HHHhh--------------cCCchhHH---------HHHh--cCChHHHHHhhCC----------CCH
Q 008940 141 EAALL-------LGQFA--------------ATDSDCKV---------HIVQ--RGAVRPLIEMLQS----------PDV 178 (548)
Q Consensus 141 ~a~~~-------L~~l~--------------~~~~~~~~---------~~~~--~g~v~~L~~ll~~----------~~~ 178 (548)
..-.. ...++ ..+|..+. .+.+ ..++..|+++|.+ .|+
T Consensus 340 dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~ 419 (480)
T 1ho8_A 340 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK 419 (480)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCc
Confidence 32221 12222 11222211 1111 1357788888873 367
Q ss_pred HHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940 179 QLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 233 (548)
Q Consensus 179 ~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 233 (548)
.+...||.=++.++...+. +..+.+-|+=..+++++.++|++|+.+|+.++..+.
T Consensus 420 ~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 420 IIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred ceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8888999999999966554 555566677777999999999999999999988764
No 114
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.80 E-value=0.00048 Score=63.52 Aligned_cols=172 Identities=17% Similarity=0.153 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhh-hcCChHHHHHH
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILM 88 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~Lv~l 88 (548)
.+.+++++..|..+-..+......++..+|+..|+......+...+..+++++.++-.+ ......++ ....+..+..+
T Consensus 132 ~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs~~~fI~~lysl 210 (339)
T 3dad_A 132 GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-VDGMLGVVAHSDTIQWLYTL 210 (339)
T ss_dssp HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-cccccchhCCHHHHHHHHHH
Confidence 45678888888885547888888899999999999999999999999999999999874 44444444 44678888999
Q ss_pred hccCChHHHHHHHHHHHHhhcCChhHHHHHHh--------c--CChHHHHHhhh---cCChHHHHHHHHHHHHhhcCCch
Q 008940 89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--------A--GALQPVIGLLS---SCCSESQREAALLLGQFAATDSD 155 (548)
Q Consensus 89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~--g~i~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~ 155 (548)
+.+.+..+.+.|+.+|..++..++.....+.+ . ..++.++.+|+ +.+.+++.++...+-.+...-++
T Consensus 211 v~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd 290 (339)
T 3dad_A 211 CASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPD 290 (339)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred HcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 99888999999999999998776544333222 1 23778999997 67788888887766655544332
Q ss_pred h--HH----HHHhcCChHHHHHhhCCC--CHHHHH
Q 008940 156 C--KV----HIVQRGAVRPLIEMLQSP--DVQLRE 182 (548)
Q Consensus 156 ~--~~----~~~~~g~v~~L~~ll~~~--~~~v~~ 182 (548)
. +. .+.+.|.=..+...++.. ++++++
T Consensus 291 ~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 291 QDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 1 11 223344444555556654 555554
No 115
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=97.77 E-value=4.8e-05 Score=64.70 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=76.2
Q ss_pred ccEEEEeCCeEEEchHHHHhccc-HHHHhhhcCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCccccchHh-HHHH
Q 008940 381 SDVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI-AQDL 454 (548)
Q Consensus 381 ~Dv~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~l 454 (548)
.-|.+.|||..|...+..|.... .+|..||.+... ....+.+-+ |-+|..|+.+|+|+-+|++.++.+. ...+
T Consensus 12 ~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~~~~l 90 (202)
T 3drx_A 12 KWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGV 90 (202)
T ss_dssp CEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSCHHHH
T ss_pred CEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCCCCHHHH
Confidence 35788999999999999998764 478889876421 112345666 4599999999999999999876543 4689
Q ss_pred HHHHHHhChHhHHHHHHHHHHh
Q 008940 455 LRAADQYLLEGLKRLCEYTIAQ 476 (548)
Q Consensus 455 l~~a~~~~~~~l~~~c~~~l~~ 476 (548)
++-|.+|+++.|.+.|++.+.+
T Consensus 91 ~eEA~FygL~~Lv~~l~~~i~e 112 (202)
T 3drx_A 91 LEEAEFYNITSLIKLVKDKIRE 112 (202)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHHHHHH
Confidence 9999999999999999998854
No 116
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.52 E-value=0.0039 Score=68.78 Aligned_cols=332 Identities=13% Similarity=0.072 Sum_probs=175.6
Q ss_pred hhHHHHHHHHHHHHHhhh-----------ChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhh
Q 008940 9 VNSVIRRAADAITNLAHE-----------NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV 77 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~-----------~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 77 (548)
.+.+|.-|+-.|.+.... +++.+..+. ..|+..+.+++..+|...+.++..++..+-.. .
T Consensus 50 ~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik-----~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~----~ 120 (960)
T 1wa5_C 50 PLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIK-----KEIVPLMISLPNNLQVQIGEAISSIADSDFPD----R 120 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHH-----HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT----T
T ss_pred CHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHH-----HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc----c
Confidence 357788888888877632 122333333 24566555566899999999999998731111 2
Q ss_pred hcCChHHHHHHhccCChHHHHHHHHHHHHhhcCC------hhHHHHHH--hcCChHHHHHh-------hhcCCh------
Q 008940 78 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS------PNIKKEVL--AAGALQPVIGL-------LSSCCS------ 136 (548)
Q Consensus 78 ~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~--~~g~i~~L~~l-------l~~~~~------ 136 (548)
..+.++.|+..+.+++...+..++.+|..++... ++.+..+. -....+.++++ +.+...
T Consensus 121 Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~ 200 (960)
T 1wa5_C 121 WPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLN 200 (960)
T ss_dssp CTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHH
T ss_pred hhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3567888999998888888999999999998632 12222111 11223433333 433321
Q ss_pred ---HHHHHHHHHHHHhhcCC-chhHHHHHhcCChHHHHHhhCCC------C---------HHHHHHHHHHHHHhhcCCcc
Q 008940 137 ---ESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSP------D---------VQLREMSAFALGRLAQDMHN 197 (548)
Q Consensus 137 ---~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~ll~~~------~---------~~v~~~a~~~L~~l~~~~~~ 197 (548)
++...++.++..+...+ +....... ...++.+..++... + ..++..++.+|..+......
T Consensus 201 ~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~ 279 (960)
T 1wa5_C 201 ILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYED 279 (960)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233555666554221 21111000 12334555555321 1 24677888888887743322
Q ss_pred hhhhHhcCChHHHHHhhc-----CCChhHHHHHHHHHHhcccCCcc---------hHHHHHhcCccccc--ccc---h--
Q 008940 198 QAGIAHNGGLVPLLKLLD-----SKNGSLQHNAAFALYGLADNEDN---------VADFIRVGGVQKLQ--DGE---F-- 256 (548)
Q Consensus 198 ~~~~~~~~~l~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~---------~~~~~~~g~i~~L~--~~~---~-- 256 (548)
.-.-.-...+...+.++. ..++.+...++..+..++..+.. ...+++.-+++.+. +.+ +
T Consensus 280 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~ 359 (960)
T 1wa5_C 280 VFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFED 359 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhc
Confidence 110001123334444443 23467777888888777654322 22222222222211 000 0
Q ss_pred -------------hhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHH----H------hhhhhhhhhHHHHhhhccCCCccc
Q 008940 257 -------------IVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM----R------VAEKGVQRRVALALAHLCSPDDQR 313 (548)
Q Consensus 257 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll----~------~~~~~~~~~a~~aL~~l~~~~~~~ 313 (548)
.......|....+..+.......+++.++.++ . +.++..|..|..+++.++.+....
T Consensus 360 dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~ 439 (960)
T 1wa5_C 360 DPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNIT 439 (960)
T ss_dssp CHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCB
T ss_pred CHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccc
Confidence 01122345555566666555555666666554 3 345678889999999997542111
Q ss_pred eeeecC-----CchHH----HHHhhcCC---CCccchhhHHHHHHHhhh
Q 008940 314 TIFIDG-----GGLEL----LLGLLGST---NPKQQLDGAVALFKLANK 350 (548)
Q Consensus 314 ~~~~~~-----~~i~~----L~~ll~~~---~~~v~~~a~~~L~~l~~~ 350 (548)
..-... ...+. ++..+.++ ++.+|..|+|++..+++.
T Consensus 440 ~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~ 488 (960)
T 1wa5_C 440 NAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ 488 (960)
T ss_dssp TTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG
T ss_pred cCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh
Confidence 100000 23333 34445665 778899999999999874
No 117
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.50 E-value=0.0013 Score=72.69 Aligned_cols=330 Identities=9% Similarity=0.025 Sum_probs=177.7
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc-----cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHH
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 84 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 84 (548)
..++..++.++..+....++.-.... ...++..++.+. ..+..++..++..+..++. .+..+..+...+.++.
T Consensus 260 ~~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~-~~~~~~~~~~~~~l~~ 337 (960)
T 1wa5_C 260 IKVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR-IPKYFEIFNNESAMNN 337 (960)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT-SHHHHGGGCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhC-cHhHHHHHcCchHHHH
Confidence 35678889999888854443211111 234455555554 3457889999999999886 3333333221123333
Q ss_pred HH-----HHhc----c-------------------CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh----
Q 008940 85 LI-----LMLR----S-------------------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---- 132 (548)
Q Consensus 85 Lv-----~ll~----~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~---- 132 (548)
++ +.+. + .....|..|..+|..++...++ .+. ...++.+.+.+.
T Consensus 338 li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~-~~~l~~i~~~l~~~~~ 413 (960)
T 1wa5_C 338 ITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVT-NIFLAHMKGFVDQYMS 413 (960)
T ss_dssp HHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHH-HHHHHHHHHHHHHHHC
T ss_pred HHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHH-HHHHHHHHHHHHHhcc
Confidence 33 3331 0 1124677888888888755331 111 113344444454
Q ss_pred --cCChHHHHHHHHHHHHhhcCCchhHHHHHhc-----CChH----HHHHhhCCC---CHHHHHHHHHHHHHhhcCCcch
Q 008940 133 --SCCSESQREAALLLGQFAATDSDCKVHIVQR-----GAVR----PLIEMLQSP---DVQLREMSAFALGRLAQDMHNQ 198 (548)
Q Consensus 133 --~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----g~v~----~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~ 198 (548)
+.+...++.|..+++.++.+...... .... .+.+ .++..+.++ ++.+|..++++++.++..-. .
T Consensus 414 ~~~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~ 491 (960)
T 1wa5_C 414 DPSKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-K 491 (960)
T ss_dssp ----CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-H
T ss_pred CcchhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-H
Confidence 45567888899999999753211100 0000 1112 233344555 88999999999999986532 1
Q ss_pred hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCc---------chHHHHHhcCcccccccchhh-hh--------
Q 008940 199 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED---------NVADFIRVGGVQKLQDGEFIV-QA-------- 260 (548)
Q Consensus 199 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~g~i~~L~~~~~~~-~~-------- 260 (548)
.. -...++.+++.+.+.++.|+..|+.+|.+++...+ ....+. ..++.++...+.. ..
T Consensus 492 -~~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~--p~l~~ll~~L~~ll~~~~~~~~~~ 567 (960)
T 1wa5_C 492 -AQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS--NSTEILLKNLIALILKHGSSPEKL 567 (960)
T ss_dssp -HH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT--TTHHHHHHHHHHHHHTTCCCHHHH
T ss_pred -HH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhh--hhHHHHHHHHHHHHHhccCCCCcc
Confidence 11 22356677788888889999999999999986421 111111 1112222211111 00
Q ss_pred -hhHHHHHHHHHHHHhhhh-------hhhHHHHHHHHh-----hhhhhhhhHHHHhhhccCC-CccceeeecCCchHHHH
Q 008940 261 -TKDCVAKTLKRLEEKIHG-------RVLNHLLYLMRV-----AEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLL 326 (548)
Q Consensus 261 -~~~~~~~~~~~~~~~~~~-------~~~~~L~~ll~~-----~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~ 326 (548)
...-...++..+...... .+++.|...+.. .++..+..++.+|+.++.. ......-.....+|.+.
T Consensus 568 ~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~ 647 (960)
T 1wa5_C 568 AENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFL 647 (960)
T ss_dssp TSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 111222233322222111 244555555543 2445666678888877654 11111223345678888
Q ss_pred HhhcCCCCccchhhHHHHHHHhhhc
Q 008940 327 GLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 327 ~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
..+.....+....+...+..+....
T Consensus 648 ~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 648 TVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 8888766677777777777777653
No 118
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.48 E-value=0.0028 Score=68.10 Aligned_cols=242 Identities=14% Similarity=0.139 Sum_probs=160.3
Q ss_pred HHHHHHHHHHhhhC---hhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHHh
Q 008940 14 RRAADAITNLAHEN---SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILML 89 (548)
Q Consensus 14 ~~a~~~L~~l~~~~---~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~ll 89 (548)
+.|+.++..+|... +.....+. +.++.++..+.+....||..|-.++..+... +++.. ..+++.|+..+
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~ 142 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAI 142 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHh
Confidence 78888999998432 12222222 6778888888888889998888888877752 23222 23688888888
Q ss_pred ccC-ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940 90 RSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 168 (548)
Q Consensus 90 ~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~ 168 (548)
.+. .+..+..|+.++..++...++. -...-..+||.+...+-+..+++...|..++..+|.. -.+++ -...+|.
T Consensus 143 ~~~~kw~~k~~~l~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~-~~n~d---~~~~~~~ 217 (986)
T 2iw3_A 143 VETNKWQEKIAILAAFSAMVDAAKDQ-VALRMPELIPVLSETMWDTKKEVKAAATAAMTKATET-VDNKD---IERFIPS 217 (986)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG-CCCTT---TGGGHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHhHHH-HHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhc-CCCcc---hhhhHHH
Confidence 754 6999999999999998765432 2222246899999999999999999999999888843 12221 1357899
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCcchh-hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcC
Q 008940 169 LIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 247 (548)
Q Consensus 169 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~ 247 (548)
|+..+.+++. ...+...|+.-+...+.-. .+. =.+|.|.+-|......+++.++-++.|+|.--+.-...
T Consensus 218 ~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~----- 288 (986)
T 2iw3_A 218 LIQCIADPTE--VPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVI----- 288 (986)
T ss_dssp HHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHH-----
T ss_pred HHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHH-----
Confidence 9999998743 3333344444333332211 111 12455666777778889999999999998743332211
Q ss_pred cccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-----hhhhhhhhHHHHhhhc
Q 008940 248 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-----AEKGVQRRVALALAHL 306 (548)
Q Consensus 248 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-----~~~~~~~~a~~aL~~l 306 (548)
..++|.|+.-++. .+|++|..+..++..|
T Consensus 289 ------------------------------~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 289 ------------------------------APFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp ------------------------------HHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred ------------------------------hhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 1244455554443 6788888887777776
No 119
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.46 E-value=0.00024 Score=69.31 Aligned_cols=240 Identities=13% Similarity=0.104 Sum_probs=147.4
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc--------c--C---ChHHHHHHHHHHHH
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--------S--E---DSAIHYEAVGVIGN 106 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~--------~--~---~~~v~~~a~~~L~~ 106 (548)
...|+.-|-++.+++|..|+.+|+.+..............+. +..++++. + . -..||+.++.+|+.
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 345555566789999999999999998643211111111111 33333332 1 1 24689999999988
Q ss_pred hhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHH
Q 008940 107 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAF 186 (548)
Q Consensus 107 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~ 186 (548)
+ ..-+.- ..++..++..+..+..+++..+...|..+. +-.. . -.++++.++..|++.+.+|+..|+.
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~-~--Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVE-D--KDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCC-C--HHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHH-H--HHHHHHHHHhhcCCcccHHHHHHHH
Confidence 8 544432 344455555557777889988888888882 1111 1 2457788888889999999999999
Q ss_pred HHHHhhcCCcchhhhHhcCChHHHHHhhcCCC--hhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHH
Q 008940 187 ALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN--GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDC 264 (548)
Q Consensus 187 ~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~ 264 (548)
+|.-++ .++... ..+..+...|.+-+ ..-.......|+.|+..+.. ..
T Consensus 322 tLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~------a~------------------ 371 (800)
T 3oc3_A 322 LLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE------LS------------------ 371 (800)
T ss_dssp HHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT------CC------------------
T ss_pred Hhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc------cc------------------
Confidence 999888 211111 22344555554432 12233455567777665521 00
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHH-hhcCCCCccchhhHHH
Q 008940 265 VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLG-LLGSTNPKQQLDGAVA 343 (548)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~ 343 (548)
.+...+|+|..++++.-+.||.+++.+|..+. ....+..+.+ ++-..+++++..+..+
T Consensus 372 -----------~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~V 430 (800)
T 3oc3_A 372 -----------IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKL 430 (800)
T ss_dssp -----------CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred -----------cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 11247889999999999999999999998887 2223444433 4556677776655544
Q ss_pred H
Q 008940 344 L 344 (548)
Q Consensus 344 L 344 (548)
-
T Consensus 431 W 431 (800)
T 3oc3_A 431 L 431 (800)
T ss_dssp H
T ss_pred H
Confidence 3
No 120
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.38 E-value=0.0027 Score=68.25 Aligned_cols=287 Identities=14% Similarity=0.110 Sum_probs=177.6
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChh--HHHHHHh
Q 008940 43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN--IKKEVLA 120 (548)
Q Consensus 43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~ 120 (548)
+.+-+...+..-+..++..+..+..++... .....+++..|.+.+.+.... +.|+.++..|+..... ..+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~- 93 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI- 93 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH-
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch-
Confidence 444444444455567777777776532111 111235777788888765444 8899999999854321 112222
Q ss_pred cCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCcchh
Q 008940 121 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQA 199 (548)
Q Consensus 121 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~ 199 (548)
-+.+|.++..+.+....++..|..++..+...-+.... ..++|.|+..|.+. ....+..|+.++..|+...+.+-
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~ 169 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV 169 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence 26789999999998899998888777777644333221 34778898888754 68999999999999997664444
Q ss_pred hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc---CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHH---
Q 008940 200 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD---NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE--- 273 (548)
Q Consensus 200 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~--- 273 (548)
...-...+|.+...+.+..+++...|..++..+|. |.+... .+|.|++..........| ...+.
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~------~~~~~~~~~~~p~~~~~~----~~~l~~~t 239 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIER------FIPSLIQCIADPTEVPET----VHLLGATT 239 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGG------GHHHHHHHHHCTTHHHHH----HHHHTTCC
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhh------hHHHHHHHhcChhhhHHH----HHHhhcCe
Confidence 44444578888889999999999999888888875 333221 123333222222222222 22221
Q ss_pred --HhhhhhhhHHHHHHHHh----hhhhhhhhHHHHhhhccCC---CccceeeecCCchHHHHHhhc-CCCCccchhhHHH
Q 008940 274 --EKIHGRVLNHLLYLMRV----AEKGVQRRVALALAHLCSP---DDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVA 343 (548)
Q Consensus 274 --~~~~~~~~~~L~~ll~~----~~~~~~~~a~~aL~~l~~~---~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~ 343 (548)
..++...+..++.+|.. .+..++..++-++.|+|.- +.....|+ ...+|.+.+... ..+|++|..|..+
T Consensus 240 fv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a 318 (986)
T 2iw3_A 240 FVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRA 318 (986)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHH
T ss_pred eEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHH
Confidence 11334455556666654 4777888899999998763 22222222 244555555544 4788888887777
Q ss_pred HHHHhh
Q 008940 344 LFKLAN 349 (548)
Q Consensus 344 L~~l~~ 349 (548)
+..|-+
T Consensus 319 ~~~l~~ 324 (986)
T 2iw3_A 319 LKTLRR 324 (986)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776643
No 121
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.34 E-value=0.00016 Score=64.90 Aligned_cols=44 Identities=27% Similarity=0.242 Sum_probs=31.4
Q ss_pred HHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHH
Q 008940 283 HLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 344 (548)
Q Consensus 283 ~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 344 (548)
.|..++.++++.||..++..++ .+.|..| .+++..|+..++..|
T Consensus 198 ~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 198 DLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 4556677788888888888753 3566666 888888887776543
No 122
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0069 Score=55.93 Aligned_cols=189 Identities=11% Similarity=0.074 Sum_probs=125.1
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchh--hHhh-hc-CChHHHHHHhccCChHHHHHHHHHHHHhhcCChh-
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK--NQIV-EC-NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN- 113 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~-~~-g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~- 113 (548)
-+| |-+-|.+.++..|..|+..|..+....+... .... .. ...+.+-..+.+.|..++..++.++..++.....
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 355 6688999999999999999988875322211 1111 11 3455667788899999999999999988753211
Q ss_pred ----HHHHHHhcCChHHHHH-hhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHH
Q 008940 114 ----IKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188 (548)
Q Consensus 114 ----~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L 188 (548)
......-..+++.|+. .+.+....++..+..++..++....... .+++.+...+.+.+|.++..++..|
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFEKKLPKLIAAAANCV 163 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhccCHHHHHHHHHHH
Confidence 1111222345676765 4777778888888888877764322111 1346677788899999999999999
Q ss_pred HHhhcCCcch---hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940 189 GRLAQDMHNQ---AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 189 ~~l~~~~~~~---~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 234 (548)
..+....... ....-...++.+..++.+.++.||..|..++..+-.
T Consensus 164 ~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 164 YELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 8876432211 111111245567788899999999999999888754
No 123
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.20 E-value=0.022 Score=50.04 Aligned_cols=218 Identities=14% Similarity=0.192 Sum_probs=142.4
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhc-CCchHHHH-hhc------cCC--H---HHHHHHHHHHHHhhccCcchhhH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVE-LLE------FTD--T---KVQRAAAGALRTLAFKNDENKNQ 75 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~-ll~------~~~--~---~v~~~a~~~L~~l~~~~~~~~~~ 75 (548)
.|+.++.|+..|+.--..-++....+=.. |.+..|++ .++ .+. . .-...|+..|..+++ +++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence 45667887766665443334443333333 54555543 222 111 1 222455556666776 7999999
Q ss_pred hhhcCChHHHHHHhccCC-----hHHHHHHHHHHHHhhc-CChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHh
Q 008940 76 IVECNALPTLILMLRSED-----SAIHYEAVGVIGNLVH-SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQF 149 (548)
Q Consensus 76 ~~~~g~i~~Lv~ll~~~~-----~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 149 (548)
+.+.++.-.|.++|+..+ +-+|..++++++.+.. ++++.-..+.+.+++|..++.++.+++-.+..|..++..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 999999999999998543 5788999999999875 3456667777889999999999999998888899988888
Q ss_pred hcCCchhHHHHHh--------cCChHH-HHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhc-------CChHHHHHh
Q 008940 150 AATDSDCKVHIVQ--------RGAVRP-LIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN-------GGLVPLLKL 213 (548)
Q Consensus 150 ~~~~~~~~~~~~~--------~g~v~~-L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-------~~l~~L~~l 213 (548)
..++.. ...+.. ..++.. +..+.+++++.+.++..++-..|+.++..+..+... |.+. .+
T Consensus 173 L~dd~G-L~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lrd~tf~---~~ 248 (268)
T 2fv2_A 173 LLDDTG-LAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFA---QV 248 (268)
T ss_dssp HHSHHH-HHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGTSSTTH---HH
T ss_pred hccchh-HHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhhChHHH---HH
Confidence 755322 111111 123332 233445678899999999999999988877665531 2221 22
Q ss_pred hcCCChhHHHHHHHHHHhc
Q 008940 214 LDSKNGSLQHNAAFALYGL 232 (548)
Q Consensus 214 l~~~~~~v~~~a~~~L~~l 232 (548)
+ .+|+..++.-...+.|+
T Consensus 249 l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 249 L-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp H-TSCHHHHHHHHHHHHHS
T ss_pred H-hcCHHHHHHHHHHHHhc
Confidence 2 35666776666666655
No 124
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.05 E-value=0.012 Score=52.99 Aligned_cols=166 Identities=11% Similarity=0.078 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhh----ccCCHHHHHHHHHHHHHhhcc----CcchhhHhhhcCCh
Q 008940 11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL----EFTDTKVQRAAAGALRTLAFK----NDENKNQIVECNAL 82 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll----~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~g~i 82 (548)
.-+..|+..|......+++. +. ..+..+++.+ .+.+..+...++..|..+... +......-. .-++
T Consensus 61 k~~~~ale~L~~~l~~~~~~---~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~l 134 (266)
T 2of3_A 61 KQHLAALDSLVRLADTSPRS---LL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFV 134 (266)
T ss_dssp HHHHHHHHHHHHHHHHCHHH---HH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhhhChHH---HH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHH
Confidence 44556666666665444332 11 1222334433 367899999999888887531 111111111 1268
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008940 83 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ 162 (548)
Q Consensus 83 ~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 162 (548)
|.|+.-+.++.+.+|..+-.++..+....+. ....+.++..+.+.+..++..++..+..+....-.. .
T Consensus 135 P~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~ 202 (266)
T 2of3_A 135 PYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-----P 202 (266)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----G
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----c
Confidence 8999999999999999999888777542221 235677888889999999999998888886432111 2
Q ss_pred cCCh---HHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940 163 RGAV---RPLIEMLQSPDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 163 ~g~v---~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 194 (548)
...+ +.+..++.+.|..||..|..++..+-..
T Consensus 203 ~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 203 LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3468 9999999999999999999999877543
No 125
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.04 E-value=0.01 Score=52.14 Aligned_cols=172 Identities=11% Similarity=0.094 Sum_probs=122.4
Q ss_pred HHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCC-----HHHHHHHHHHHHHhhc-cCcchhhHhhhcCChHHHHHH
Q 008940 15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-----TKVQRAAAGALRTLAF-KNDENKNQIVECNALPTLILM 88 (548)
Q Consensus 15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-----~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~Lv~l 88 (548)
.|+..+..++ .+|+.|..+.++++.-.|-.+|+..+ +.+|..++.+++.+.. ++++....+.+.++++..++.
T Consensus 75 naLaLlQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri 153 (268)
T 2fv2_A 75 NALALLQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 153 (268)
T ss_dssp HHHHHHHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence 5555667777 78999999999998888888887544 6789999999999986 345666677788999999999
Q ss_pred hccCChHHHHHHHHHHHHhhcCChhHHHH------HHh-cCChHHHHH-hhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940 89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKE------VLA-AGALQPVIG-LLSSCCSESQREAALLLGQFAATDSDCKVHI 160 (548)
Q Consensus 89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~------~~~-~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 160 (548)
++.+++-.+..|..++.++-.++...... +.. ...+..++. +.+.+++.+.+..+++-..|+ +++..+..+
T Consensus 154 me~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLs-dn~rar~aL 232 (268)
T 2fv2_A 154 MESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS-DNPRAREAL 232 (268)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TSHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh-cCHHHHHHH
Confidence 99999999999999999998775543211 111 122333333 345677889999999999996 556666655
Q ss_pred HhcCChHH------HHHhhCCCCHHHHHHHHHHHHHh
Q 008940 161 VQRGAVRP------LIEMLQSPDVQLREMSAFALGRL 191 (548)
Q Consensus 161 ~~~g~v~~------L~~ll~~~~~~v~~~a~~~L~~l 191 (548)
.+ ++|. +..++ .+|+.++.+-...+.|+
T Consensus 233 ~~--~LP~~Lrd~tf~~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 233 RQ--CLPDQLKDTTFAQVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HH--HSCGGGTSSTTHHHH-TSCHHHHHHHHHHHHHS
T ss_pred HH--hCcHHhhChHHHHHH-hcCHHHHHHHHHHHHhc
Confidence 43 1121 11222 25777777777666665
No 126
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.00 E-value=0.013 Score=52.86 Aligned_cols=178 Identities=12% Similarity=0.075 Sum_probs=123.7
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc----cCChHHHHHHHHHHHHhhcC----C
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----SEDSAIHYEAVGVIGNLVHS----S 111 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~----~~~~~v~~~a~~~L~~l~~~----~ 111 (548)
=+.+...+-+.|...+..|+..|......+++ .+.. .++.+++.+. +.+..+...++.+|..+... +
T Consensus 48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~ 122 (266)
T 2of3_A 48 KVSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTE 122 (266)
T ss_dssp CHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566666677888899999988887653332 2211 3444555443 77889999998888887421 1
Q ss_pred hhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 008940 112 PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 191 (548)
Q Consensus 112 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l 191 (548)
....+. ...-.+|.|+.-+.++...++..+-.++..++...+. ..+++.++.-+++.+..+|..++..+..+
T Consensus 123 y~~~~~-ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 123 TPMSQE-EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYY 194 (266)
T ss_dssp CCCCHH-HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred ccchHH-HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 111000 0123678999988888888988888888777643222 23567788889999999999999999998
Q ss_pred hcCCcchhhhHhcCCh---HHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940 192 AQDMHNQAGIAHNGGL---VPLLKLLDSKNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 192 ~~~~~~~~~~~~~~~l---~~L~~ll~~~~~~v~~~a~~~L~~l~~ 234 (548)
-...... ...++ +.+..++.+.|..|+..|..++..+-.
T Consensus 195 i~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 195 ITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 7443322 12467 889999999999999999999887754
No 127
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.95 E-value=0.0019 Score=63.17 Aligned_cols=215 Identities=16% Similarity=0.087 Sum_probs=129.4
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhc--CChHHHHHhhh-c------C---ChHHHHHHHHHHHH
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQPVIGLLS-S------C---CSESQREAALLLGQ 148 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~-~------~---~~~~~~~a~~~L~~ 148 (548)
..+.|+.-|-++.+++|.-|+.+|+.+.............. ...-.++-++. + + -..||+.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 34566666678999999999999999864322110000000 11122222221 1 1 25699999999999
Q ss_pred hhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHH
Q 008940 149 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 228 (548)
Q Consensus 149 l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 228 (548)
+ ..-+.. ..++..++..+..+..+++..++-.|..+. +-... -.+.++.++..|.+.+++|+..|+.+
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 8 554443 344555555557788999999999999991 11111 23557778888899999999999999
Q ss_pred HHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhh-hhhh-hhhHHHHhhhc
Q 008940 229 LYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGV-QRRVALALAHL 306 (548)
Q Consensus 229 L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~-~~~a~~aL~~l 306 (548)
|.-++ .++.... ++..+...|.+- |-.. -......|+.|
T Consensus 323 LiPIA-~p~~l~~--------------------------------------LL~iLWd~L~~LDDLSASTgSVMdLLAkL 363 (800)
T 3oc3_A 323 LCHFP-ITDSLDL--------------------------------------VLEKCWKNIESEELISVSKTSNLSLLTKI 363 (800)
T ss_dssp HTTSC-CSSTHHH--------------------------------------HHHHHHHHHHTCCSCCTTHHHHHHHHHHH
T ss_pred hhhhc-chhhHHH--------------------------------------HHHHHHHHhhhhcccchhhHHHHHHHHHH
Confidence 99999 3322222 233444444432 1111 11112233333
Q ss_pred cCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHh
Q 008940 307 CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348 (548)
Q Consensus 307 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 348 (548)
+..+... -.....+|.|...+.|+-+.||..+..+|..+.
T Consensus 364 ~s~p~~a--~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 364 YRENPEL--SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHCTTC--CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HcCCccc--ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 3222211 112378999999999999999998887766543
No 128
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.92 E-value=0.0012 Score=59.11 Aligned_cols=103 Identities=16% Similarity=0.065 Sum_probs=54.3
Q ss_pred hhhhHHHHHHHHH-----HHHHhh-hChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcC
Q 008940 7 RAVNSVIRRAADA-----ITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 80 (548)
Q Consensus 7 ~~~~~~~~~a~~~-----L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 80 (548)
...+.++..++.. +..+.. .++..|......-..+.|..+++++++.||..++..+
T Consensus 61 d~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l------------------ 122 (244)
T 1lrv_A 61 DPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRL------------------ 122 (244)
T ss_dssp CSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHS------------------
T ss_pred CCCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhC------------------
Confidence 3345566655532 222221 2333344333333334455555566666665555532
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHH
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 145 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~ 145 (548)
..+.+..+++++++.+|..++.- +. .+.+..+++++++.|+..++..
T Consensus 123 ~~~~L~~L~~D~d~~VR~~aA~~---l~---------------~~~l~~l~~D~d~~VR~~aa~~ 169 (244)
T 1lrv_A 123 PLEQLEQMAADRDYLVRAYVVQR---IP---------------PGRLFRFMRDEDRQVRKLVAKR 169 (244)
T ss_dssp CTGGGGGGTTCSSHHHHHHHHHH---SC---------------GGGGGGTTTCSCHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHh---cC---------------HHHHHHHHcCCCHHHHHHHHHc
Confidence 12345566788889999888763 21 1234455666677777666653
No 129
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.88 E-value=0.27 Score=45.37 Aligned_cols=206 Identities=15% Similarity=0.178 Sum_probs=149.5
Q ss_pred HHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhc--CChHHHHHHhc-cCChHHHHHHHHHHHHhh
Q 008940 32 TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLR-SEDSAIHYEAVGVIGNLV 108 (548)
Q Consensus 32 ~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~ 108 (548)
..+...+.+..|+..|..=+.+.|..+..+..++.+.....+...++. .-.+.+..++. -+++++-..+-..|+...
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 345556788888888888888999999999998887544332222110 11223333333 235666666777777776
Q ss_pred cCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhc---CChHHHHHhhCCCCHHHHHHHH
Q 008940 109 HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR---GAVRPLIEMLQSPDVQLREMSA 185 (548)
Q Consensus 109 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---g~v~~L~~ll~~~~~~v~~~a~ 185 (548)
.+ +.+...+...+.+-.+.+.++.++-++...|..++..+...+.......... ......-.++.+++--++..++
T Consensus 152 r~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 152 RH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp TS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred Hh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 55 6667778888888899999999999999999999988876655544444443 3466677889999999999999
Q ss_pred HHHHHhhcCCcchhhh----HhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940 186 FALGRLAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 238 (548)
Q Consensus 186 ~~L~~l~~~~~~~~~~----~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 238 (548)
..|+.+-.+..+...+ .+..-+..++.+|++....++..|..+.--+..++.-
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K 287 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK 287 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence 9999999887775433 3445577899999999999999999988888766543
No 130
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.014 Score=53.86 Aligned_cols=178 Identities=13% Similarity=0.070 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHhhhChhhH--H-HHHhcC-CchHHHHhhccCCHHHHHHHHHHHHHhhccCcc-----hhhHhhhcCC
Q 008940 11 SVIRRAADAITNLAHENSSIK--T-RVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-----NKNQIVECNA 81 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~--~-~i~~~g-~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-----~~~~~~~~g~ 81 (548)
..|..|+..|..+....+... . .+...+ ..+.+...+.+.|..++..++.++..++..-.. ......-..+
T Consensus 24 K~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~ 103 (278)
T 4ffb_C 24 KARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTW 103 (278)
T ss_dssp HHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHH
Confidence 457888888888775433211 1 111122 345566788899999999999999988752111 1111112235
Q ss_pred hHHHHH-HhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCC-ch-hHH
Q 008940 82 LPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SD-CKV 158 (548)
Q Consensus 82 i~~Lv~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~-~~~ 158 (548)
++.|+. .+.+....++..+..++..++...... .. .++.+...+.+.++.++..++..|..+.... .. ...
T Consensus 104 l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~ 177 (278)
T 4ffb_C 104 TPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNV 177 (278)
T ss_dssp HHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCH
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCc
Confidence 666765 477888899999988887776432211 11 2456677788899999999888888775321 11 001
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940 159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 159 ~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 194 (548)
...-..+++.+..++.+.++.||..|..++..+-..
T Consensus 178 k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 178 QTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 111123566788889999999999999999988643
No 131
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=96.71 E-value=0.00065 Score=52.70 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=69.8
Q ss_pred cEEEEeCCeEEEchHHHHhcccH-HHHhhhcCCC-CCCCCCceecCCCCHHHHHHHHHHHhcCccccchH-hHHHHHHHH
Q 008940 382 DVTFLVEGRRFYAHRICLLASSD-AFRAMFDGGY-REKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLRAA 458 (548)
Q Consensus 382 Dv~~~~~~~~~~~h~~il~~~s~-~f~~~~~~~~-~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~ll~~a 458 (548)
-|.+.|||..|...+..|..... ++..|+.+.. .....+.+-+ |=+|..|+.+|+|+-+|++.++.+ ....+++-|
T Consensus 6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea 84 (115)
T 3kvt_A 6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL 84 (115)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHH
Confidence 47889999999999999987643 4556665422 1223446666 458999999999999999987754 467999999
Q ss_pred HHhChHhHH--HHHHHHHHhcC
Q 008940 459 DQYLLEGLK--RLCEYTIAQDI 478 (548)
Q Consensus 459 ~~~~~~~l~--~~c~~~l~~~l 478 (548)
.+|+++... .-|...+.++-
T Consensus 85 ~fy~i~~~~l~~CC~~~~~~~~ 106 (115)
T 3kvt_A 85 EFWGLDSNQVEPCCWMTYTAHR 106 (115)
T ss_dssp HHHTCCGGGBCGGGSHHHHSCC
T ss_pred HHhCCChHHHHHHHHHHHHhcc
Confidence 999998744 33555554433
No 132
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.61 E-value=0.022 Score=62.91 Aligned_cols=295 Identities=10% Similarity=-0.005 Sum_probs=154.2
Q ss_pred hhhHHHHHHHHHHHHHhhhCh--hhHHHHHhcCCchHHHHh-------hccCCH---HHHHHHHHHHHHhhccCcchhh-
Q 008940 8 AVNSVIRRAADAITNLAHENS--SIKTRVRMEGGIPPLVEL-------LEFTDT---KVQRAAAGALRTLAFKNDENKN- 74 (548)
Q Consensus 8 ~~~~~~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~l-------l~~~~~---~v~~~a~~~L~~l~~~~~~~~~- 74 (548)
..|++++.|+.++..+....+ +....+. ..++.++.+ +...+. +.....++.+..++........
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~ 333 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTAF--VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLS 333 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH--HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHHH--HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999985322 1111111 123333332 123342 6666777777777642221100
Q ss_pred Hh---------hhcCChHHHHHHhcc-----CChHHHHHHHHHHHHhhcCC---------hhHHHHHHh--cCChHHHHH
Q 008940 75 QI---------VECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSS---------PNIKKEVLA--AGALQPVIG 129 (548)
Q Consensus 75 ~~---------~~~g~i~~Lv~ll~~-----~~~~v~~~a~~~L~~l~~~~---------~~~~~~~~~--~g~i~~L~~ 129 (548)
.+ .-...++.++.+... .++++...++..+..++... ......+.. ...++.++.
T Consensus 334 ~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 413 (971)
T 2x1g_F 334 GITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVR 413 (971)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 00 001345555555543 47788999999888876411 111111111 133444444
Q ss_pred hhhcCCh---------------HHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHH
Q 008940 130 LLSSCCS---------------ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALG 189 (548)
Q Consensus 130 ll~~~~~---------------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-----~~~~v~~~a~~~L~ 189 (548)
.+.-++. ..|+.+..+|..++...+..... -+++.+...+.+ .+...++.++.+++
T Consensus 414 ~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~----~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~ 489 (971)
T 2x1g_F 414 KSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILE----ILAAMLDEAIADLQRHPTHWTKLEACIYSFQ 489 (971)
T ss_dssp HTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHH----HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 4432111 24455666776666433311111 122333333332 56778999999999
Q ss_pred HhhcCCcchhhhHhcCChHHHHHhh---c--CCChhHHHHHHHHHHhcccCC-cchHHHHHhcCcccccccchhhhhhhH
Q 008940 190 RLAQDMHNQAGIAHNGGLVPLLKLL---D--SKNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQATKD 263 (548)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~L~~ll---~--~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~~~~~~~~~~~ 263 (548)
.++....... ...++.++.++ . +.++.++..++++++.++..- .....
T Consensus 490 ~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~---------------------- 543 (971)
T 2x1g_F 490 SVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY---------------------- 543 (971)
T ss_dssp HTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C----------------------
T ss_pred HHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH----------------------
Confidence 9986644321 12233333333 3 347889999999999997421 11000
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCC--CCccchhhH
Q 008940 264 CVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST--NPKQQLDGA 341 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~ 341 (548)
-..+++.++..| + +.++..|++++.+++..-...-.-.-...+..|.+++..+ +...+..+.
T Consensus 544 -------------l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~ 607 (971)
T 2x1g_F 544 -------------IPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLM 607 (971)
T ss_dssp -------------HHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred -------------HHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 012566667666 2 8899999999999984321110001123445556666653 345577777
Q ss_pred HHHHHHhhh
Q 008940 342 VALFKLANK 350 (548)
Q Consensus 342 ~~L~~l~~~ 350 (548)
.++..++..
T Consensus 608 ~ai~~i~~~ 616 (971)
T 2x1g_F 608 FSIGKLMSL 616 (971)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 777777753
No 133
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=96.57 E-value=0.0046 Score=48.58 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=66.2
Q ss_pred ccEEEEeCCeEEEchHHHHhcccHHHHhhhcCC----CCCCCCCceecCCCCHHHHHHHHHHHhcCccccchH-hHHHHH
Q 008940 381 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLL 455 (548)
Q Consensus 381 ~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~ll 455 (548)
.-|.+.|||..|...+..|..... .+|... +.....+.+-++ =++..|+.+|+|+-+|++.++.+ .+..++
T Consensus 13 ~~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~FiD-Rdp~~F~~ILnflR~G~l~~p~~~~~~~l~ 88 (124)
T 1s1g_A 13 ELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFFD-RDPEVFRCVLNFYRTGKLHYPRYECISAYD 88 (124)
T ss_dssp CEEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEEC-SCHHHHHHHHHHHHHSCBCCCTTSCHHHHH
T ss_pred CEEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEEc-CChHHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence 358889999999999999976532 233321 112234466664 49999999999999999987754 478999
Q ss_pred HHHHHhChHhHH--HHHHHHHH
Q 008940 456 RAADQYLLEGLK--RLCEYTIA 475 (548)
Q Consensus 456 ~~a~~~~~~~l~--~~c~~~l~ 475 (548)
+-|++|+++.+. ..|.....
T Consensus 89 ~Ea~fy~i~~l~l~~cC~~~~~ 110 (124)
T 1s1g_A 89 DELAFYGILPEIIGDCCYEEYK 110 (124)
T ss_dssp HHHHHTTCCGGGBCHHHHHHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHH
Confidence 999999999873 44444443
No 134
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.43 E-value=0.081 Score=57.94 Aligned_cols=307 Identities=12% Similarity=0.082 Sum_probs=157.3
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCc--chhhHhhhcCChHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND--ENKNQIVECNALPTLI 86 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~Lv 86 (548)
+++++..++.+|......-+. ..+...+.++.+.++|.. ++++..|+.+|..+..... +.+..++..=.+...+
T Consensus 206 ~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~ 281 (980)
T 3ibv_A 206 NYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFF 281 (980)
T ss_dssp CHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHH
Confidence 456777888888887753222 344556677777777764 7999999999999986422 2333332220111112
Q ss_pred HHhc--cCChHHHHHHHHHHHHhhc------CCh-----hHHHHH--HhcCChHHHHHhhhcCChHHHHHHHHHHHHhhc
Q 008940 87 LMLR--SEDSAIHYEAVGVIGNLVH------SSP-----NIKKEV--LAAGALQPVIGLLSSCCSESQREAALLLGQFAA 151 (548)
Q Consensus 87 ~ll~--~~~~~v~~~a~~~L~~l~~------~~~-----~~~~~~--~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 151 (548)
..+. .+|.++.+..++.+..++. ..+ +.+... .-.+.++.++.++.+++.++...+...+..+..
T Consensus 282 ~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~ 361 (980)
T 3ibv_A 282 SKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLV 361 (980)
T ss_dssp CC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 2222 4566776655555544421 111 111111 113588899999998888887777666555542
Q ss_pred CCch------hHHHH--HhcCChHHHHHhhCCC------C----------HHHHHHHHHHHHHhhcCCcchhhhH-hcCC
Q 008940 152 TDSD------CKVHI--VQRGAVRPLIEMLQSP------D----------VQLREMSAFALGRLAQDMHNQAGIA-HNGG 206 (548)
Q Consensus 152 ~~~~------~~~~~--~~~g~v~~L~~ll~~~------~----------~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~ 206 (548)
.... ..... .-..+++.++..++-+ + .+.|.... .+...+..-.....+. -...
T Consensus 362 ~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~ 440 (980)
T 3ibv_A 362 SLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSA 440 (980)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHH
Confidence 1100 00100 0012334444444321 1 02444444 3333221111100000 0001
Q ss_pred hHH-HHHhhc---CCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhH
Q 008940 207 LVP-LLKLLD---SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 282 (548)
Q Consensus 207 l~~-L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
+.. +.+.+. +.+....+.++.+|..++..-....... .+.-+.+ ..+++
T Consensus 441 i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~-~~~~~~l--------------------------p~l~~ 493 (980)
T 3ibv_A 441 ITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFF-NEVDKSP--------------------------TVLSQ 493 (980)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTB-CSSSCCB--------------------------CHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccccc-Ccccchh--------------------------HHHHH
Confidence 212 223332 2346677888888888876422100000 0000000 11345
Q ss_pred HHHHHHH-----hhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHH------hhcCCCCccchhhHHHHHHHhhhc
Q 008940 283 HLLYLMR-----VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLG------LLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 283 ~L~~ll~-----~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~------ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
.+..++. ...+.+|..++++++..+..-... ...++.+++ -+.++++.++.+|+.++.++++..
T Consensus 494 ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-----~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 494 ILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-----SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp HHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-----CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-----chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 5555655 467889999999999987643321 123444444 333577889999999999999876
Q ss_pred c
Q 008940 352 T 352 (548)
Q Consensus 352 ~ 352 (548)
.
T Consensus 569 ~ 569 (980)
T 3ibv_A 569 K 569 (980)
T ss_dssp T
T ss_pred h
Confidence 4
No 135
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=96.41 E-value=0.0024 Score=48.64 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=60.1
Q ss_pred EEEEeCCeEEEchHHHHhcccHHHHhhhcCCC----CCCCCCceecCCCCHHHHHHHHHHHhcCccccchH-hHHHHHHH
Q 008940 383 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGY----REKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLRA 457 (548)
Q Consensus 383 v~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~----~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~ll~~ 457 (548)
|.+.|||..|...+..|..... .|+.... .....+.+-++ =+|..|+.+|+|+-+|++.++.+ .+..+.+-
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~FiD-Rdp~~F~~ILnflR~g~l~~p~~~~~~~l~~E 77 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFFD-RDPDIFRHILNFYRTGKLHYPRHECISAYDEE 77 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEEC-SCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEEe-CCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 6789999999999999976542 2333210 11233456664 49999999999999999987654 37889999
Q ss_pred HHHhChHhH
Q 008940 458 ADQYLLEGL 466 (548)
Q Consensus 458 a~~~~~~~l 466 (548)
|++|+++.+
T Consensus 78 a~fy~i~~l 86 (105)
T 1nn7_A 78 LAFFGLIPE 86 (105)
T ss_dssp HHHHTCCSC
T ss_pred HHHcCCCHH
Confidence 999999886
No 136
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.40 E-value=0.018 Score=53.08 Aligned_cols=202 Identities=12% Similarity=0.132 Sum_probs=147.9
Q ss_pred HHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhH----HHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHH
Q 008940 116 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK----VHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGR 190 (548)
Q Consensus 116 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~ 190 (548)
+.+...+.+..|+..+..-+-+.++.++.++.++.+.....+ .-+.. --+.+..++.. +++++...+-..|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 455667889999999999999999999999999986654322 12221 22222222322 356777777888888
Q ss_pred hhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc-cCCcchHHHHHhcCcccccccchhhhhhhHHHHHHH
Q 008940 191 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 269 (548)
Q Consensus 191 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~ 269 (548)
+.........+...+.+..+.+..+.++-++...|..++..+- .++.....+....
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~n----------------------- 206 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQH----------------------- 206 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT-----------------------
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHh-----------------------
Confidence 8888777777888888888999999999999999999888774 4444433332221
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccc----eeeecCCchHHHHHhhcCCCCccchhhHHHHH
Q 008940 270 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR----TIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 345 (548)
Q Consensus 270 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 345 (548)
. ..+....-.+|.+++.-.|..++..|+.+..+..+. +.+-+..-+..+..+|+++...+|..|..+.-
T Consensus 207 ------y-d~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFK 279 (341)
T 1upk_A 207 ------Y-DRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK 279 (341)
T ss_dssp ------H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ------H-HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhhee
Confidence 1 136667778899999999999999999998776544 45555667889999999999999999988766
Q ss_pred HHhh
Q 008940 346 KLAN 349 (548)
Q Consensus 346 ~l~~ 349 (548)
-..-
T Consensus 280 vFVA 283 (341)
T 1upk_A 280 VFVA 283 (341)
T ss_dssp HHHH
T ss_pred eeee
Confidence 5544
No 137
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.32 E-value=0.071 Score=58.82 Aligned_cols=290 Identities=10% Similarity=0.072 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHhh--hChhhHHHHHhcCCchHHHHhhc----------------cCCHHHHHHHHHHHHHhhccCc-c
Q 008940 11 SVIRRAADAITNLAH--ENSSIKTRVRMEGGIPPLVELLE----------------FTDTKVQRAAAGALRTLAFKND-E 71 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~ll~----------------~~~~~v~~~a~~~L~~l~~~~~-~ 71 (548)
+++..++.++..... .-|.. .....++.+.. |. +++++++..|+.++..+....+ .
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~ 278 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCH 278 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred hHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCcccc
Confidence 566777777766553 22222 22334444554 31 1457899999999999987322 1
Q ss_pred hhhHhhhcCChHHHHHH-------hccCC---hHHHHHHHHHHHHhhcCChhH-HHH---------HHhcCChHHHHHhh
Q 008940 72 NKNQIVECNALPTLILM-------LRSED---SAIHYEAVGVIGNLVHSSPNI-KKE---------VLAAGALQPVIGLL 131 (548)
Q Consensus 72 ~~~~~~~~g~i~~Lv~l-------l~~~~---~~v~~~a~~~L~~l~~~~~~~-~~~---------~~~~g~i~~L~~ll 131 (548)
........ .++.++.+ +.+++ .+.....++++..++...... .+. -.-...++.++.+.
T Consensus 279 ~~~~~~~~-l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~ 357 (971)
T 2x1g_F 279 NYPKTAFV-LIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCT 357 (971)
T ss_dssp GCHHHHHH-HHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH-HHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHH
Confidence 11111111 23333332 23334 367777788887776432221 100 00113455555555
Q ss_pred hc-----CChHHHHHHHHHHHHhhcCC---------chhHHHH--HhcCChHHHHHhhCCC--------CH-------HH
Q 008940 132 SS-----CCSESQREAALLLGQFAATD---------SDCKVHI--VQRGAVRPLIEMLQSP--------DV-------QL 180 (548)
Q Consensus 132 ~~-----~~~~~~~~a~~~L~~l~~~~---------~~~~~~~--~~~g~v~~L~~ll~~~--------~~-------~v 180 (548)
.. .++++...+++.+..++... +.....+ .-..+++.++..+..+ ++ ..
T Consensus 358 ~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~ 437 (971)
T 2x1g_F 358 DKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCY 437 (971)
T ss_dssp HCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHH
T ss_pred cCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHH
Confidence 33 46778889998887776410 1111111 1123455555555321 11 35
Q ss_pred HHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcC-----CChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccc
Q 008940 181 REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS-----KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGE 255 (548)
Q Consensus 181 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~ 255 (548)
|..+..+|..++...+. .+.. -.++.+...+.+ .+...++.++.+++.++.......
T Consensus 438 R~~~~~~l~~~~~~~~~--~~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~--------------- 499 (971)
T 2x1g_F 438 RQDISDTFMYCYDVLND--YILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE--------------- 499 (971)
T ss_dssp HHHHHHHHHHHHTTCTT--HHHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--------------------
T ss_pred HHHHHHHHHHHHHHHhH--HHHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh---------------
Confidence 66677777777654331 1110 112222333332 466788888999999876432100
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHH---H--hhhhhhhhhHHHHhhhccCCC-ccceeeecCCchHHHHHhh
Q 008940 256 FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM---R--VAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLL 329 (548)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll---~--~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~i~~L~~ll 329 (548)
...++.++.++ . +.++.+|..++++++.++..- .+.+. + ...++.|+..+
T Consensus 500 ----------------------~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~-l-~~vl~~l~~~l 555 (971)
T 2x1g_F 500 ----------------------KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY-I-PPAINLLVRGL 555 (971)
T ss_dssp -----------------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C-H-HHHHHHHHHHH
T ss_pred ----------------------hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH-H-HHHHHHHHHHh
Confidence 01222333322 2 237889999999999987531 11111 1 24567777777
Q ss_pred cCCCCccchhhHHHHHHHhhhc
Q 008940 330 GSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 330 ~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
+ +.++..|+.++.++++..
T Consensus 556 ~---~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 556 N---SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp H---SSCHHHHHHHHHHHHHHC
T ss_pred C---hHHHHHHHHHHHHHHHHH
Confidence 3 789999999999999764
No 138
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=96.05 E-value=0.007 Score=48.60 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=63.2
Q ss_pred CCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCC----CCCCCCCceecCCCCHHHHHHHHHHHhcCccccchH-hHHH
Q 008940 379 TLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQD 453 (548)
Q Consensus 379 ~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~ 453 (548)
...-|.+.|||..|...+..|..... .|+... ......+.+-++ =++..|+.+|+|+-+|++.++.+ .+..
T Consensus 33 ~~~~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFiD-Rdp~~F~~ILnflR~G~l~~p~~~~~~~ 108 (140)
T 2nz0_B 33 QDELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFFD-RDPEVFRCVLNFYRTGKLHYPRYECISA 108 (140)
T ss_dssp CCCEEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEEC-SCHHHHHHHHHHHHHSSBCCCTTSCHHH
T ss_pred CCCEEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEEe-CCcHHHHHHHHHHhcCCcCCCCCcCHHH
Confidence 34568899999999999999976532 344321 111234466664 59999999999999999987654 4789
Q ss_pred HHHHHHHhChHhH
Q 008940 454 LLRAADQYLLEGL 466 (548)
Q Consensus 454 ll~~a~~~~~~~l 466 (548)
+++-|++|+++.+
T Consensus 109 l~eEa~fy~i~~l 121 (140)
T 2nz0_B 109 YDDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHHTCCGG
T ss_pred HHHHHHHcCCChH
Confidence 9999999999886
No 139
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.76 E-value=0.16 Score=55.59 Aligned_cols=332 Identities=10% Similarity=-0.006 Sum_probs=171.7
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCH-HHHHHHHHHHHHhhcc--Ccc--------h-----h
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT-KVQRAAAGALRTLAFK--NDE--------N-----K 73 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~--~~~--------~-----~ 73 (548)
+-++.+.+.++..+......... .+.++.++.+++.++. ......+++|..+.+. +.. . +
T Consensus 104 ~~IrnKL~~~la~l~~~~~p~~W----p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lk 179 (980)
T 3ibv_A 104 AYISNAVQHLLTLLFLQLYPSNW----NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVK 179 (980)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccC----chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHH
Confidence 46777777777777743211111 2456677777776544 3445556666644331 100 1 2
Q ss_pred hHhhhcC---ChHHHHHHhc----cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHH
Q 008940 74 NQIVECN---ALPTLILMLR----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 146 (548)
Q Consensus 74 ~~~~~~g---~i~~Lv~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L 146 (548)
+.+.+.. +.+....+|. ..++.++..++.++......-+- ..+.+.+.++.+.+++.+ ++++..|+.+|
T Consensus 180 d~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL 255 (980)
T 3ibv_A 180 DAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI--EELRCAACETM 255 (980)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS--HHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC--hHHHHHHHHHH
Confidence 2222211 1333344443 36888999999999998765332 455666788888888876 78999999999
Q ss_pred HHhhcCCch--hHHHHHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhc------CCcc--------hhhhHhcCChH
Q 008940 147 GQFAATDSD--CKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQ------DMHN--------QAGIAHNGGLV 208 (548)
Q Consensus 147 ~~l~~~~~~--~~~~~~~~g~v~~L~~ll~--~~~~~v~~~a~~~L~~l~~------~~~~--------~~~~~~~~~l~ 208 (548)
..+.+.... .+..++..=.+...+..+. .+|.+..+..++.+..++. ..+. +..-.-.+.++
T Consensus 256 ~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~ 335 (980)
T 3ibv_A 256 TEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFP 335 (980)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHH
T ss_pred HHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHH
Confidence 998865432 2222222101111222222 4566666555544443321 1110 00011125677
Q ss_pred HHHHhhcCCChhHHHHHHHHHHhcccC----Cc---chHH-------HHHhcCccccc---ccchhh----------hhh
Q 008940 209 PLLKLLDSKNGSLQHNAAFALYGLADN----ED---NVAD-------FIRVGGVQKLQ---DGEFIV----------QAT 261 (548)
Q Consensus 209 ~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~---~~~~-------~~~~g~i~~L~---~~~~~~----------~~~ 261 (548)
.++.++.+++.++...++..+..+... +. .... ++.. .+..+. +..+.. ..-
T Consensus 336 ~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~-li~k~~yp~d~~~~~~~d~ed~~~F~e~ 414 (980)
T 3ibv_A 336 YLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEA-IIKKMKYDESQEWDDDPDSEEEAEFQEM 414 (980)
T ss_dssp HHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHH-HHHTTSCCTTCCCCCCSSSSTHHHHHHH
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHH-HHHHccCCCccccccccchhHHHHHHHH
Confidence 788888888888777666665554321 10 1111 1110 111110 001110 011
Q ss_pred hHHHHHHHHHHHHhhhhhhhH----HHHHHHH-------hhhhhhhhhHHHHhhhccCCCc--ccee----eecCCchHH
Q 008940 262 KDCVAKTLKRLEEKIHGRVLN----HLLYLMR-------VAEKGVQRRVALALAHLCSPDD--QRTI----FIDGGGLEL 324 (548)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~----~L~~ll~-------~~~~~~~~~a~~aL~~l~~~~~--~~~~----~~~~~~i~~ 324 (548)
..+.....+.+..+....++. .+..++. +.++..++.++.+|+.++.+-. .... -.-...++.
T Consensus 415 Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~l 494 (980)
T 3ibv_A 415 RKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQI 494 (980)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHH
Confidence 122222223333333333444 4444332 3467788999999999987522 1111 011124566
Q ss_pred HHHhhc-----CCCCccchhhHHHHHHHhhh
Q 008940 325 LLGLLG-----STNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 325 L~~ll~-----~~~~~v~~~a~~~L~~l~~~ 350 (548)
+..++. .+++.|+..+++++.+.++-
T Consensus 495 l~~ll~s~i~~~~hp~V~~~~~~~l~rys~~ 525 (980)
T 3ibv_A 495 LALVTTSQVCRHPHPLVQLLYMEILVRYASF 525 (980)
T ss_dssp HHHHHHSSTTTCCCHHHHHHHHHHHHHTGGG
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 666665 67788899999999998764
No 140
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.68 E-value=0.23 Score=54.62 Aligned_cols=293 Identities=12% Similarity=0.074 Sum_probs=153.6
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhh--cCChHHHH
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLI 86 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~Lv 86 (548)
.|.++..+++++...+..-..... .. ...++.|+..+++ +.++..|+.++.+++.... ..+.. ..++..+.
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~---~~l~p~~~~il~~l~ 574 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVLHALGN--PELSVSSVSTLKKICRECK---YDLPPYAANIVAVSQ 574 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG---GGCTTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHH
Confidence 567899999999998852122222 22 3678888888854 8899999999999996322 22221 12344455
Q ss_pred HHhcc--CChHHHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhhh----cC-ChHHHHH---HHHHHHHhhcCC--
Q 008940 87 LMLRS--EDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLS----SC-CSESQRE---AALLLGQFAATD-- 153 (548)
Q Consensus 87 ~ll~~--~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~----~~-~~~~~~~---a~~~L~~l~~~~-- 153 (548)
.++.. .+...+..+..+++.++...+ +...... ...++.+...+. .. +++.+.. ...+|+.+...-
T Consensus 575 ~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~ 653 (963)
T 2x19_B 575 DVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDI 653 (963)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55554 356889999999999876443 3222222 224444444332 22 3444433 233333333210
Q ss_pred --ch-----------------hHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHH
Q 008940 154 --SD-----------------CKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK 212 (548)
Q Consensus 154 --~~-----------------~~~~~~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ 212 (548)
+. .........+++.+..++.. .++.+.+.++.++..+...-... + ...++.++.
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~--~--~~~l~~~~~ 729 (963)
T 2x19_B 654 SHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDD--F--APMVPQLCE 729 (963)
T ss_dssp SCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSST--T--GGGHHHHHH
T ss_pred CcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccc--c--cccHHHHHH
Confidence 00 00111223455555555542 46788999999999886432211 0 112444333
Q ss_pred hh----cC-CChhHHHHHHHHHHhccc----CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHH
Q 008940 213 LL----DS-KNGSLQHNAAFALYGLAD----NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 283 (548)
Q Consensus 213 ll----~~-~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
.+ .. ..+. .+..+..+.. ++.....+.+ .-..++..
T Consensus 730 ~l~~~~~~~~~~~----~l~l~~~li~~f~~~~~~~~~~~~-------------------------------~l~~~~~~ 774 (963)
T 2x19_B 730 MLGRMYSTIPQAS----ALDLTRQLVHIFAHEPAHFPPIEA-------------------------------LFLLVTSV 774 (963)
T ss_dssp HHHHHHHHSCCHH----HHHHHHHHHHHHTTCTTTCHHHHH-------------------------------HHHHHHHH
T ss_pred HHHHHHHcCCccH----HHHHHHHHHHHhCCCcchHHHHHH-------------------------------HHHHHHHH
Confidence 32 21 2222 2233333322 1111111100 00112344
Q ss_pred HHHHHHh---hhhhhhhhHHHHhhhccCCCccceeeecC-----CchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940 284 LLYLMRV---AEKGVQRRVALALAHLCSPDDQRTIFIDG-----GGLELLLGLLGSTNPKQQLDGAVALFKLANK 350 (548)
Q Consensus 284 L~~ll~~---~~~~~~~~a~~aL~~l~~~~~~~~~~~~~-----~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 350 (548)
.+.++.. .+++++......+..+....... +... ..++.+...+.+.+..+...++..+..+...
T Consensus 775 ~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 775 TLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL--FLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp HHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG--GGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH--HcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 4444443 35788888877777776432211 1111 2344556667788888888999999988764
No 141
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=95.66 E-value=0.0079 Score=45.18 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=60.9
Q ss_pred EEEEeCCeEEEchHHHHhcccH-HHHhhhcC-CCCCCCCCceecCCCCHHHHHHHHHHHhc-CccccchH-hHHHHHHHH
Q 008940 383 VTFLVEGRRFYAHRICLLASSD-AFRAMFDG-GYREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVTLD-IAQDLLRAA 458 (548)
Q Consensus 383 v~~~~~~~~~~~h~~il~~~s~-~f~~~~~~-~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-~~~~~~~~-~~~~ll~~a 458 (548)
|.+.|||..|...+..|..... .+..|+.. .......+.+-+ |=+|..|+.+|+|+-+ |++..+.+ .+..+++-|
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea 81 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI 81 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence 6788999999999999975422 23333322 111223456666 4589999999999998 89877644 468899999
Q ss_pred HHhChHhHH
Q 008940 459 DQYLLEGLK 467 (548)
Q Consensus 459 ~~~~~~~l~ 467 (548)
++|+++++.
T Consensus 82 ~fy~i~~~~ 90 (100)
T 1t1d_A 82 KFYELGENA 90 (100)
T ss_dssp HHTTCCHHH
T ss_pred HHcCCCHHH
Confidence 999998744
No 142
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.52 E-value=0.24 Score=43.23 Aligned_cols=143 Identities=15% Similarity=0.104 Sum_probs=97.4
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHH-hhhcCChHHHHHHHHHHHHhhc-CCchhHHH
Q 008940 82 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAA-TDSDCKVH 159 (548)
Q Consensus 82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~ 159 (548)
++....+.+++..++|..|+.+|+.+ ...+ ..++.+.. +..+++-.|++.++.++..++. .+++
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence 33444555677889999999999888 3211 14566665 5567778999999999999984 3333
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-Ccc
Q 008940 160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDN 238 (548)
Q Consensus 160 ~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~ 238 (548)
..++.+....+++++.+|..|...+.--+.....+. .-.-.++.+-.+..+++.-|+....+.|..++.. ++.
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~--dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKE--NPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTT--CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhc--CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 267788899999999999999887754332211110 0111344455566677888999999999999974 555
Q ss_pred hHHHHH
Q 008940 239 VADFIR 244 (548)
Q Consensus 239 ~~~~~~ 244 (548)
...+++
T Consensus 213 V~~~~~ 218 (240)
T 3l9t_A 213 VKIELK 218 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455443
No 143
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.22 E-value=0.16 Score=44.37 Aligned_cols=132 Identities=14% Similarity=0.066 Sum_probs=92.9
Q ss_pred HhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH-HhccCChHHHHHHHHHHHHhhc-CChhHHHHHHhcC
Q 008940 45 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVH-SSPNIKKEVLAAG 122 (548)
Q Consensus 45 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~-ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g 122 (548)
.+.+++..++|..|+..|+.+ .. . ...++.+.. +-.+++..|++.++.++..++. ..++ .
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~-~~-~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~ 139 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL-SK-D--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------K 139 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT-TT-S--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------T
T ss_pred HHHhCcchHHHHHHHHHHHhc-cC-c--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------H
Confidence 455667789999999988877 31 1 124555555 5557899999999999999974 3343 2
Q ss_pred ChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940 123 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 197 (548)
Q Consensus 123 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 197 (548)
.++.+.....+++..+++.|...+.--+.. +.... ....+++.+-.+..+++.-|+...++.|..+++..+.
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~--dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKE--NPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTT--CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhc--CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 677888999999999999998876443322 11100 0012456666666778889999999999999987654
No 144
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.07 E-value=0.078 Score=58.24 Aligned_cols=140 Identities=9% Similarity=0.044 Sum_probs=88.4
Q ss_pred CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-----CChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 92 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 92 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
.++..++.++++++.++.+..+-...-.-..+++.|+.++.+ ....++..++|+++..+..-......+ ..++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence 579999999999999987654322222223467888888764 223355677899988764322222211 2466
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHh------cCChHHHHH----hhcCCChhHHHHHHHHHHhcccC
Q 008940 167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH------NGGLVPLLK----LLDSKNGSLQHNAAFALYGLADN 235 (548)
Q Consensus 167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~l~~L~~----ll~~~~~~v~~~a~~~L~~l~~~ 235 (548)
+.|+..+.++++.++..|++++.++|.... ..+.. ...++.+++ ....-++.-...+..+++.+...
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c~--~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKCK--YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHT--HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHH--HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 677777877889999999999999997533 22321 112333333 33334555566777777777654
No 145
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.98 E-value=0.67 Score=42.62 Aligned_cols=179 Identities=15% Similarity=0.222 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cC
Q 008940 14 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SE 92 (548)
Q Consensus 14 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~ 92 (548)
.++-..|.-|. ++...-.-+++.+|+..+....+-++.++.+.++..|...+.. ...-..--.+.++.++..++ ++
T Consensus 261 tR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa--ksL~~t~L~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 261 IRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA--KALAKTPLENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC--GGGGTSCCTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch--HHHhhccccccchHHHHHhccCC
Confidence 34555555555 5555566678889999999999999999999999999998862 22211112346788888876 78
Q ss_pred ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-------hHHHHHHHHHHHHhhc--------------
Q 008940 93 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-------SESQREAALLLGQFAA-------------- 151 (548)
Q Consensus 93 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-------~~~~~~a~~~L~~l~~-------------- 151 (548)
+.++.......|.|...+....++..+..|+|+.|...+.... ..-+..+|.+++|-.+
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N 417 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN 417 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence 9999999999999999888888999999999999988876432 2234445554444321
Q ss_pred -----CCchhHHH---HHhcCChHHHHHhhCCCC------HHHHHHHHHHHHHhhcCC
Q 008940 152 -----TDSDCKVH---IVQRGAVRPLIEMLQSPD------VQLREMSAFALGRLAQDM 195 (548)
Q Consensus 152 -----~~~~~~~~---~~~~g~v~~L~~ll~~~~------~~v~~~a~~~L~~l~~~~ 195 (548)
-.+..++. +.+..++..|+.+|+-+. .++|...++.+.-+...+
T Consensus 418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP 475 (619)
T 3c2g_A 418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTP 475 (619)
T ss_dssp SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCT
T ss_pred CccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCC
Confidence 01222222 334456777777776432 245555555555454443
No 146
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.88 E-value=0.095 Score=57.55 Aligned_cols=143 Identities=10% Similarity=0.055 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc-----CChHHHHHHHHHHHHhhcCChhHHHHHHhcCCh
Q 008940 50 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 124 (548)
Q Consensus 50 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 124 (548)
.++..++.++.+++.++.+-.+....-.-..+++.|+.++.+ +...++..++++++..+..-....+ . -...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~-L~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-F-LRTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-H-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-H-HHHHH
Confidence 579999999999999997533332322223367788888763 3344566788999888643211111 1 12345
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh------cCChH----HHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940 125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ------RGAVR----PLIEMLQSPDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 125 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~g~v~----~L~~ll~~~~~~v~~~a~~~L~~l~~~ 194 (548)
..++..+.++++.++..|++++.++|. +++..+.. ...++ .+......-++.-+..+..+++.+...
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 556666666778899999999999994 44444432 11233 333444445666778888889988876
Q ss_pred Ccc
Q 008940 195 MHN 197 (548)
Q Consensus 195 ~~~ 197 (548)
.+.
T Consensus 620 ~~~ 622 (1023)
T 4hat_C 620 ERS 622 (1023)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 147
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.63 E-value=0.84 Score=42.11 Aligned_cols=167 Identities=14% Similarity=0.073 Sum_probs=97.5
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH----HHhc-cCChHHHHHHHHHHHHhhcCChhH
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI----LMLR-SEDSAIHYEAVGVIGNLVHSSPNI 114 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv----~ll~-~~~~~v~~~a~~~L~~l~~~~~~~ 114 (548)
+..+.++++- ..+.+.-++..++-++. ++.....+.+.+.-..++ ..+. ...+.-+..++++++|+... +..
T Consensus 105 l~~l~kil~W-P~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g 181 (304)
T 3ebb_A 105 LQILWKAINC-PEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAG 181 (304)
T ss_dssp HHHHHHHHTS-CTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHH
T ss_pred HHHHHHHHcC-CHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chh
Confidence 3455566533 23456666777776665 455555554433333333 3333 23466789999999999866 545
Q ss_pred HHHHHhc--CChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 008940 115 KKEVLAA--GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRL 191 (548)
Q Consensus 115 ~~~~~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l 191 (548)
++.+... .+++.+...+.+.+..++..++..+.|++......+..-....++..+..+++. .+++....++.+|++|
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 5655542 344555555556677888888889999874311100000011134444555543 6889999999999999
Q ss_pred hcCCcchhhhHhcCChHH
Q 008940 192 AQDMHNQAGIAHNGGLVP 209 (548)
Q Consensus 192 ~~~~~~~~~~~~~~~l~~ 209 (548)
...+.....+.+.-++..
T Consensus 262 ~~~~~~~~~lak~l~~~~ 279 (304)
T 3ebb_A 262 ISDDSNAVQLAKSLGVDS 279 (304)
T ss_dssp HTTCHHHHHHHHHTTHHH
T ss_pred HhCChhHHHHHHHcCHHH
Confidence 976554444444433433
No 148
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.60 E-value=0.25 Score=47.84 Aligned_cols=164 Identities=18% Similarity=0.092 Sum_probs=107.4
Q ss_pred cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHH
Q 008940 49 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128 (548)
Q Consensus 49 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 128 (548)
.++...+..|++.+.....+=|+..+. ++..+++++.+++..+|..|++.|..+|.+ ... . .+...|+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i-~-----kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENL-P-----RVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCH-H-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhh-h-----hHHHHHH
Confidence 456899999999999998866666555 688899999999999999999999999987 332 2 2466889
Q ss_pred HhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC--cchhhhHhcCC
Q 008940 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM--HNQAGIAHNGG 206 (548)
Q Consensus 129 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~ 206 (548)
++|+..++.-...+-.+|..+...++. +.+..+...+..+++.+|+.++..|..=...- +....-.+.-.
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 999988877666666777777654443 23444555555567889988877776533221 11111122223
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHhc
Q 008940 207 LVPLLKLLDSKNGSLQHNAAFALYGL 232 (548)
Q Consensus 207 l~~L~~ll~~~~~~v~~~a~~~L~~l 232 (548)
+..+...|++-..+=-......|..+
T Consensus 179 ~~~ikK~L~DVT~~EF~L~m~lL~~l 204 (507)
T 3u0r_A 179 LTESKKVLEDVTGEEFVLFMKILSGL 204 (507)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhc
Confidence 44455556544433233344455444
No 149
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.42 E-value=0.76 Score=50.49 Aligned_cols=136 Identities=17% Similarity=0.107 Sum_probs=90.4
Q ss_pred ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh---ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCCh
Q 008940 48 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML---RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 124 (548)
Q Consensus 48 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 124 (548)
.+.++..++.++.+++.++.+-.+.. ...++.+++.+ .++++.++..++++++.++..-.... -.-..++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~--~~l~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP--VMINSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH--HHHTTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH--HHHHHHH
Confidence 45678899999999999997533311 12344455444 24578899999999999975322111 1234688
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh--cCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCC
Q 008940 125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDM 195 (548)
Q Consensus 125 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~ 195 (548)
+.++..+.+ +.++..|+.++.+++..... .+.. ..+++.+..++.. -+...+..+..+++.++...
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~~~---~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRECKY---DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHHTGG---GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 888888865 88999999999999854322 1111 2234444455554 25678889999999988644
No 150
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.35 E-value=0.72 Score=44.71 Aligned_cols=121 Identities=18% Similarity=0.118 Sum_probs=93.1
Q ss_pred cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHH
Q 008940 91 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 170 (548)
Q Consensus 91 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~ 170 (548)
.++...+..|+..+.....+.|+.++. ++..+++++.+.+..+|..|...|..+|.+ +... .+...|.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHH
Confidence 357899999999999999999998766 567999999999999999999999999966 3322 3668899
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHH
Q 008940 171 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 230 (548)
Q Consensus 171 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 230 (548)
++|+.+++.-....-.+|..+...++. +.+..+...+.++++.+++.++..|.
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk-------~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAK-------GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChH-------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 999998887777777777776543321 23555555555667888887777664
No 151
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.31 E-value=3.2 Score=36.56 Aligned_cols=125 Identities=14% Similarity=0.189 Sum_probs=84.6
Q ss_pred hhhHhhhcCChHHHHHHhcc-----------CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHH
Q 008940 72 NKNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 140 (548)
Q Consensus 72 ~~~~~~~~g~i~~Lv~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~ 140 (548)
..+.+ ..+|+..|+..|.. .+.+.+..++.+|..+..........+...+.+..+...+.++.+.++.
T Consensus 36 Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~ 114 (233)
T 2f31_A 36 WVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMI 114 (233)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHH
T ss_pred HHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHH
Confidence 34444 35677777777651 1356788899999999766555555555567899999999999999999
Q ss_pred HHHHHHHHhhcCCc-hh-HHHH----------HhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcc
Q 008940 141 EAALLLGQFAATDS-DC-KVHI----------VQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN 197 (548)
Q Consensus 141 ~a~~~L~~l~~~~~-~~-~~~~----------~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~ 197 (548)
.+...|..+|.... .. ...+ .+......++..+++ ++.+.+..+...+-.+....+.
T Consensus 115 ~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~d 184 (233)
T 2f31_A 115 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE 184 (233)
T ss_dssp HHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCC
Confidence 99998888886543 12 2211 223456678888874 5566777776666666665543
No 152
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.23 E-value=1.1 Score=41.30 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHhhccCcchhhHhhhc--CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHH--HHHHhcCChHH
Q 008940 51 DTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK--KEVLAAGALQP 126 (548)
Q Consensus 51 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~g~i~~ 126 (548)
.+..+..+++++.|+-. ++..+..+... .+++.+...+.+++..++..++.++.|++......+ +.. ...+..
T Consensus 161 ~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~ 237 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSL 237 (304)
T ss_dssp CHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHH
T ss_pred ChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHH
Confidence 46679999999999997 56666666543 244444555556788999999999999975321100 110 012334
Q ss_pred HHHhhh-cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHH
Q 008940 127 VIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREM 183 (548)
Q Consensus 127 L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~ 183 (548)
+..++. ..+.+....++.+|+++...+...++.....|+-..+-..... ..+.+.+.
T Consensus 238 l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~ 296 (304)
T 3ebb_A 238 ISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSEC 296 (304)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHH
Confidence 444443 3568889999999999997654443333333443333333333 33444444
No 153
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=92.84 E-value=1.1 Score=49.88 Aligned_cols=176 Identities=12% Similarity=0.086 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc--cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh
Q 008940 12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 89 (548)
Q Consensus 12 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll 89 (548)
.+..+..+|..++.-.+.. +. .-..+.+-+.+. ..++..++.++.+++.++.+.......-.-..+++.++.+.
T Consensus 429 ~~~~~~~~L~~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~ 504 (1049)
T 3m1i_C 429 LYKSEREVLVYLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT 504 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH
Confidence 3445666777777433221 11 011233344443 35688999999999999864322211111112444444443
Q ss_pred cc-----CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHH---
Q 008940 90 RS-----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV--- 161 (548)
Q Consensus 90 ~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--- 161 (548)
.. +.+.++..++++++..+..-....+ . -..+++.++..+.++++.++..|++++.+++.. ++..+.
T Consensus 505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~-~-l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~---~~~~l~~~~ 579 (1049)
T 3m1i_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-F-LRTVILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQ 579 (1049)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-H-HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH---HTHHHHSCC
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHhHHH-H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---HHHHhhccc
Confidence 31 2344555688899887643211111 1 123577778888888899999999999999954 333332
Q ss_pred -------hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 008940 162 -------QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 196 (548)
Q Consensus 162 -------~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 196 (548)
-..+++.+..++..-+.+-......+++.+....+
T Consensus 580 ~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 580 PRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp TTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 11233334444555444555666777777765443
No 154
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.70 E-value=5.8 Score=37.90 Aligned_cols=178 Identities=15% Similarity=0.154 Sum_probs=110.1
Q ss_pred HHHHhhccCC-HHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhc-----------cCChHHHHHHHHHHHHhh
Q 008940 42 PLVELLEFTD-TKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLR-----------SEDSAIHYEAVGVIGNLV 108 (548)
Q Consensus 42 ~L~~ll~~~~-~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~-----------~~~~~v~~~a~~~L~~l~ 108 (548)
..++.|.++. ..-....+..|..-.+.+ ......+. .+|+..|+.+|. ..+...+..+++||..+.
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 3455555432 222223344444333322 33445555 667888888875 124577888999999997
Q ss_pred cCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc-hh-HHHH----------HhcCChHHHHHhhCC-
Q 008940 109 HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DC-KVHI----------VQRGAVRPLIEMLQS- 175 (548)
Q Consensus 109 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~----------~~~g~v~~L~~ll~~- 175 (548)
.........+.....+..+...+.+..+.++..+...|..+|.... .+ ...+ .+..-...++..+++
T Consensus 149 N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~ 228 (383)
T 3eg5_B 149 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 228 (383)
T ss_dssp SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred cchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc
Confidence 6655555555567889999999999999999999999998886543 22 2211 233567788888887
Q ss_pred CCHHHHHHHHHHHHHhhcCCcc---h----hhhHhcCChHHHHHhhcCC-ChhH
Q 008940 176 PDVQLREMSAFALGRLAQDMHN---Q----AGIAHNGGLVPLLKLLDSK-NGSL 221 (548)
Q Consensus 176 ~~~~v~~~a~~~L~~l~~~~~~---~----~~~~~~~~l~~L~~ll~~~-~~~v 221 (548)
.+.+.+..+...+-.+....+. | ..+.. -|+..++.-++.. ++.+
T Consensus 229 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~-~Gl~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 229 TSIALKVGCLQLINALITPAEELDFRVHIRSELMR-LGLHQVLQELREIENEDM 281 (383)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-TTHHHHHHHHTTSCCHHH
T ss_pred CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CChHHHHHHHhcCCChhH
Confidence 5667777777777667665543 2 22334 3444544445543 4433
No 155
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=91.88 E-value=0.87 Score=50.53 Aligned_cols=102 Identities=10% Similarity=0.105 Sum_probs=65.2
Q ss_pred CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-----CChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 92 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 92 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
.++..++.++++++.++.......+.-.-..+++.+..+... +.+.++..++++++..+.........+ ..++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HHHH
Confidence 578999999999999986543321111112244445444322 223344468888888764322222222 2467
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940 167 RPLIEMLQSPDVQLREMSAFALGRLAQDM 195 (548)
Q Consensus 167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 195 (548)
+.++..+.++++.++..|+.++.+++...
T Consensus 543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 77888888889999999999999999753
No 156
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=91.07 E-value=1.8 Score=39.85 Aligned_cols=134 Identities=10% Similarity=0.100 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh-c
Q 008940 55 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-S 133 (548)
Q Consensus 55 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~ 133 (548)
..++...|.-+- ++....+.+++.+++..+...++-++.++.+..+..|...+.. ...... --...+|.+++.+. +
T Consensus 260 vtR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa-ksL~~t-~L~e~LPFi~~~i~~h 336 (619)
T 3c2g_A 260 IIRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA-KALAKT-PLENILPFLLRLIEIH 336 (619)
T ss_dssp HHHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC-GGGGTS-CCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch-HHHhhc-cccccchHHHHHhccC
Confidence 344444444444 5777888999999999999999999999999999999998533 222111 01245788887775 5
Q ss_pred CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-------CCHHHHHHHHHHHHHh
Q 008940 134 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-------PDVQLREMSAFALGRL 191 (548)
Q Consensus 134 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-------~~~~v~~~a~~~L~~l 191 (548)
++.++.......|+|...+....+......|.++.|-..+.. .+..-+..+|+.++|.
T Consensus 337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 678899999999999998887888888888999988887643 2344566666666664
No 157
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=90.01 E-value=3.4 Score=37.48 Aligned_cols=133 Identities=11% Similarity=0.079 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHh--cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhc--CChHHHH
Q 008940 11 SVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLI 86 (548)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~Lv 86 (548)
+....|+..|..++ ++...-..|.+ ...+..|+ +.....+.+++.|+++|+...+.||.....+.+. ..+..+.
T Consensus 43 ~~le~aLD~L~ElS-HDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 43 ARLEDSFDRIMEFA-HDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHGGGT-TSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHhh-hhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 45778899999999 56666555554 22333333 3344568899999999999999999988877763 4555555
Q ss_pred HHhcc-------CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC--ChHHHHHHHHHHHHhh
Q 008940 87 LMLRS-------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFA 150 (548)
Q Consensus 87 ~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~ 150 (548)
.-|.. ....++..-+.+|..|..+.... ...++..|.+++... ++.++..++..+..+-
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 44432 24467788888898888765322 145678888888766 7888888888777664
No 158
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=89.97 E-value=13 Score=35.53 Aligned_cols=148 Identities=16% Similarity=0.220 Sum_probs=95.1
Q ss_pred hhHhhhcCChHHHHHHhcc-----------CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHH
Q 008940 73 KNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQRE 141 (548)
Q Consensus 73 ~~~~~~~g~i~~Lv~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~ 141 (548)
...+. .+|+..|+..|.. .+......+++||..+..........+...+++..+...+.+..+.++..
T Consensus 41 v~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~ 119 (386)
T 2bnx_A 41 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 119 (386)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHH
T ss_pred HHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence 33443 4567777776641 13567888999999997665666566666788999999999888999999
Q ss_pred HHHHHHHhhcCCc-hh-HHHH----------HhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcc-------hhhh
Q 008940 142 AALLLGQFAATDS-DC-KVHI----------VQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN-------QAGI 201 (548)
Q Consensus 142 a~~~L~~l~~~~~-~~-~~~~----------~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~-------~~~~ 201 (548)
++..|..+|.... .. ...+ .+......++..+.. .+.+.+..+...+-.+...++. |..+
T Consensus 120 vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef 199 (386)
T 2bnx_A 120 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL 199 (386)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 9988888886543 12 1111 223456678888874 5666777777767667666553 2233
Q ss_pred HhcCChHHHHHhhcC-CChhHH
Q 008940 202 AHNGGLVPLLKLLDS-KNGSLQ 222 (548)
Q Consensus 202 ~~~~~l~~L~~ll~~-~~~~v~ 222 (548)
.. -|+..++.-++. .++.+.
T Consensus 200 ~~-~GL~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 200 MR-LGLHQVLQELREIENEDMK 220 (386)
T ss_dssp HH-TTHHHHHHHHTTCCCHHHH
T ss_pred HH-CChHHHHHHHhccCChhHH
Confidence 34 445555555544 444443
No 159
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=89.32 E-value=5.1 Score=35.24 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCc-ch-hhHh----------
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-EN-KNQI---------- 76 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~---------- 76 (548)
..+.+..++.||..+..........+...+.+..|...|.++++.++..++..|..+|..+. +. ...+
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~ 146 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 146 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHh
Confidence 35778899999999996555666666666788899999999999999999999998886433 22 2222
Q ss_pred hhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChh------HHHHHHhcCChHHHHHhhhcCChHHH
Q 008940 77 VECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN------IKKEVLAAGALQPVIGLLSSCCSESQ 139 (548)
Q Consensus 77 ~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~g~i~~L~~ll~~~~~~~~ 139 (548)
.+..-...+++.++ +.+.+.+..++..+..+....++ .|..+...|..+.+-++-...++++.
T Consensus 147 ~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~ 216 (233)
T 2f31_A 147 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK 216 (233)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHH
T ss_pred CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHH
Confidence 12234556777776 44667777777777777655443 35555666666555444444444443
No 160
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=88.53 E-value=5 Score=36.42 Aligned_cols=136 Identities=12% Similarity=0.021 Sum_probs=87.7
Q ss_pred ChHHHHHHHHHHHHhhcCChhHHHHHH-hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh--cCChHHH
Q 008940 93 DSAIHYEAVGVIGNLVHSSPNIKKEVL-AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPL 169 (548)
Q Consensus 93 ~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~v~~L 169 (548)
+.+--..|+..|..++.+-.---+++- +...+..|+ +.....+.+++.++++++...+.+|.....+.+ ...+..+
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 344567788888888755332223332 223344444 334455778999999999988998888776655 2344444
Q ss_pred HHhhCC-------CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC--ChhHHHHHHHHHHhcc
Q 008940 170 IEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLA 233 (548)
Q Consensus 170 ~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~ 233 (548)
+.-|.. ....++..-+.+|..|..++. .+ ...++..|.+++... ++.++..++..+..+-
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 433322 234677888999999988762 22 235677788887766 7888888888777664
No 161
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=87.97 E-value=8.5 Score=42.48 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHhhcc----CcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChH
Q 008940 50 TDTKVQRAAAGALRTLAFK----NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 125 (548)
Q Consensus 50 ~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 125 (548)
.++.++..++.+++.++.. ++......++ .+.+.+.+.+...+.+-+..++++|+|+.. + ..++
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~l~ 474 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIK 474 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCC--h---------hHHH
Confidence 3466777777777777641 1111111111 123334444556678888899999999953 3 2466
Q ss_pred HHHHhhhc-------CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcCCc
Q 008940 126 PVIGLLSS-------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML--QSPDVQLREMSAFALGRLAQDMH 196 (548)
Q Consensus 126 ~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~ 196 (548)
.+..++.. ....++..|+++|.+++...+.. +-+.++++. ...++++|..|+..|.... ++
T Consensus 475 ~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~--P~ 544 (1056)
T 1lsh_A 475 KIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVFFESK--PS 544 (1056)
T ss_dssp HHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC--CC
T ss_pred HHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHHHHHHHHHHC--cC
Confidence 77777642 12468888999999997544332 225577777 4578899998887775432 21
Q ss_pred chhhhHhcCChHHHHHhhcC-CChhHHHHHHHHHHhcccCC
Q 008940 197 NQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNE 236 (548)
Q Consensus 197 ~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~ 236 (548)
. ..+..+...+.. .+..|.......|.+++...
T Consensus 545 -~------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 545 -V------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp -H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred -H------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 1 123344545543 56667667777777776543
No 162
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=87.69 E-value=14 Score=41.50 Aligned_cols=176 Identities=11% Similarity=0.040 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHHHHHhhh-----ChhhHHHHHhcCCchHHHHhhc---cCCHHHHHHHHHHHHHhhccC-cchhhHhhhc
Q 008940 9 VNSVIRRAADAITNLAHE-----NSSIKTRVRMEGGIPPLVELLE---FTDTKVQRAAAGALRTLAFKN-DENKNQIVEC 79 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~ 79 (548)
.+.++..|+..|.+.... +++.+..+. ..++..+...-. .+...++...+.++..++..+ ++ ...
T Consensus 60 ~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-----~Wp 133 (1204)
T 3a6p_A 60 VAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-----HWP 133 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-----TCT
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-----cch
Confidence 456777777777776532 333344333 222222222211 135778888888888887631 21 134
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHhhcCC-------hh----HHHHHHhc--CChHHHHHhhhc-------------
Q 008940 80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-------PN----IKKEVLAA--GALQPVIGLLSS------------- 133 (548)
Q Consensus 80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~-------~~----~~~~~~~~--g~i~~L~~ll~~------------- 133 (548)
+.++.|+.++.+ ++..++.++.+|..++.+. .. .++.+... .+++.+..++.+
T Consensus 134 ~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~ 212 (1204)
T 3a6p_A 134 DMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTS 212 (1204)
T ss_dssp THHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCST
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 677888888875 5566788888888886431 11 11122221 122333333332
Q ss_pred ------CChHHHHHHHHHHHHhhcCCchhHHHHHhcC--ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940 134 ------CCSESQREAALLLGQFAATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDM 195 (548)
Q Consensus 134 ------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 195 (548)
.+..+...+..++.+....-+. ..+.+.. .++.+..++. +++++..|+.+|..+....
T Consensus 213 ~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 213 QESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred chhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 1123455556666655433221 1223322 6677776665 4679999999999999643
No 163
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=87.38 E-value=7.9 Score=36.97 Aligned_cols=129 Identities=19% Similarity=0.233 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCc-ch-hhHh----------h
Q 008940 10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-EN-KNQI----------V 77 (548)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~----------~ 77 (548)
...+..++.||..+..........+.....+..|...+.+.++.++..++..|..+|.... ++ ...+ .
T Consensus 134 ~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~ 213 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 213 (383)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhC
Confidence 3677889999999986555666666777788999999999999999999999999887443 33 2222 2
Q ss_pred hcCChHHHHHHhcc-CChHHHHHHHHHHHHhhcCChh------HHHHHHhcCChHHHHHhhhcCChHH
Q 008940 78 ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------IKKEVLAAGALQPVIGLLSSCCSES 138 (548)
Q Consensus 78 ~~g~i~~Lv~ll~~-~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~g~i~~L~~ll~~~~~~~ 138 (548)
+..-...++..++. .+.+.+..++..+..+....++ .|..+...|..+.+-.+=...++++
T Consensus 214 e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 214 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 281 (383)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHH
T ss_pred CCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhH
Confidence 23346778888875 5778888777777777665443 3455566676665555333334443
No 164
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=85.78 E-value=4.7 Score=44.51 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=86.4
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc-------CChHHHHHHHHHHHHhhcCChhHHH
Q 008940 44 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNLVHSSPNIKK 116 (548)
Q Consensus 44 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~ 116 (548)
.+.+...+.+.+..++++|+|+.. + +.++.|.+++.. ....++..|+++|++++...+..
T Consensus 446 ~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-- 512 (1056)
T 1lsh_A 446 SQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-- 512 (1056)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--
T ss_pred HHHHhcCChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--
Confidence 344456778888999999999985 3 256677777642 24578899999999998654432
Q ss_pred HHHhcCChHHHHHhhh--cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhc
Q 008940 117 EVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 193 (548)
Q Consensus 117 ~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 193 (548)
+-+.+.++.. ..++++|..|...|..-. |.. ..+..+...+.. ++.+|.......|.+++.
T Consensus 513 ------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~---P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 513 ------VQEIVLPIFLNVAIKSELRIRSCIVFFESK---PSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp ------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC---CCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHhcCCCCChHHHHHHHHHHHHHC---cCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 2346777774 456888888887775432 322 234556666665 678899999999999997
Q ss_pred CCcc
Q 008940 194 DMHN 197 (548)
Q Consensus 194 ~~~~ 197 (548)
....
T Consensus 577 s~~P 580 (1056)
T 1lsh_A 577 SSNP 580 (1056)
T ss_dssp CCSG
T ss_pred cCCc
Confidence 6644
No 165
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=84.60 E-value=15 Score=35.15 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCc-ch-hhHh----------
Q 008940 9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-EN-KNQI---------- 76 (548)
Q Consensus 9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~---------- 76 (548)
..+.+..++.||..+..........+...+++..|...+.++++.++..++..|..+|.... +. ...+
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 45778899999999996555666666777788999999999999999999999988887433 22 2221
Q ss_pred hhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChh------HHHHHHhcCChHHHHHhhhcCChHHH
Q 008940 77 VECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN------IKKEVLAAGALQPVIGLLSSCCSESQ 139 (548)
Q Consensus 77 ~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~g~i~~L~~ll~~~~~~~~ 139 (548)
.+..-...++..+. +.+.+.+..++..+..+....++ +|..+...|..+.+-.+-...++++.
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK 220 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHH
Confidence 12234556777776 45667787777777777665553 35566666766665544444445443
No 166
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=83.85 E-value=0.98 Score=34.24 Aligned_cols=32 Identities=9% Similarity=0.294 Sum_probs=30.2
Q ss_pred CCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 008940 478 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 509 (548)
Q Consensus 478 l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 509 (548)
++.+|+..++..|..|+.+.|++.|.+|+.++
T Consensus 77 ~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 77 LEADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 67799999999999999999999999999876
No 167
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=83.60 E-value=4.4 Score=44.56 Aligned_cols=104 Identities=12% Similarity=0.129 Sum_probs=67.5
Q ss_pred CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-----hHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940 92 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-----SESQREAALLLGQFAATDSDCKVHIVQRGAV 166 (548)
Q Consensus 92 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 166 (548)
.++...+.++++++.++..-.+-.+.-.-..+++.|+.+..... ..++...+++++..+..-......+ ..++
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L--~~vl 568 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL--KTVV 568 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH--HHHH
Confidence 35889999999999997543322222222246777777776542 2244445577777654322222222 2467
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940 167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHN 197 (548)
Q Consensus 167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 197 (548)
..++..+.++++.++..|+.++..+|.....
T Consensus 569 ~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~ 599 (1073)
T 3gjx_A 569 NKLFEFMHETHDGVQDMACDTFIKIAQKCRR 599 (1073)
T ss_dssp HHHHHHTTCCSTTHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888999999999999999976543
No 168
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=82.57 E-value=9.4 Score=41.96 Aligned_cols=143 Identities=13% Similarity=0.067 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCC-----hHHHHHHHHHHHHhhcCChhHHHHHHhcCCh
Q 008940 50 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-----SAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 124 (548)
Q Consensus 50 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 124 (548)
.++...+.++++++.++..-.+..+.-.=..+++.|+.+...+. ..++...+++++..+..-....+ + -...+
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~-~-L~~vl 568 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWK-F-LKTVV 568 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-H-HHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHH-H-HHHHH
Confidence 35889999999999998532222221111236777777776441 23444455777776533111111 1 12356
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh--cC-ChHHHHHhhC-------CCCHHHHHHHHHHHHHhhcC
Q 008940 125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RG-AVRPLIEMLQ-------SPDVQLREMSAFALGRLAQD 194 (548)
Q Consensus 125 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g-~v~~L~~ll~-------~~~~~v~~~a~~~L~~l~~~ 194 (548)
..+++.+.+.++.++..|+.++..+|..+ +..++. .| ..|.+-.+++ .-.++-......+++.+...
T Consensus 569 ~~L~~~m~~~~~~vq~aA~~af~~i~~~C---~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~ 645 (1073)
T 3gjx_A 569 NKLFEFMHETHDGVQDMACDTFIKIAQKC---RRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGA 645 (1073)
T ss_dssp HHHHHHTTCCSTTHHHHHHHHHHHHHHHT---GGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHH---HHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 67777778888999999999999999543 333332 11 2233333333 22455556666677777755
Q ss_pred Ccc
Q 008940 195 MHN 197 (548)
Q Consensus 195 ~~~ 197 (548)
.+.
T Consensus 646 ~p~ 648 (1073)
T 3gjx_A 646 QTD 648 (1073)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 169
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=82.21 E-value=26 Score=39.34 Aligned_cols=223 Identities=15% Similarity=0.103 Sum_probs=121.1
Q ss_pred ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh--hcCChHHHHHHHHHHHHhhcCC----chhHHHHHhcCCh
Q 008940 93 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCCSESQREAALLLGQFAATD----SDCKVHIVQRGAV 166 (548)
Q Consensus 93 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~g~v 166 (548)
+.+.|..|-..|.++-.. ..+...+...+ .+.+..++..|+..|.+..... +......++..++
T Consensus 26 ~~~~r~~Ae~~L~~~~~~----------p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll 95 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEK----------CPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVM 95 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHH----------CTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhC----------chHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 667788888888776332 12344444433 3456788989998888876331 2222333444455
Q ss_pred HHHHHhhCC---CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHH
Q 008940 167 RPLIEMLQS---PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI 243 (548)
Q Consensus 167 ~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 243 (548)
+.+...... ..+.++...+.++..++...-.. ...+.++.+++++.+ ++..+..++.+|..++.+-..
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~----- 166 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT----- 166 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc-----
Confidence 554443221 35778888899999988543211 123567778888866 455567788888887642100
Q ss_pred HhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-------------------hhhhhhhhHHHHhh
Q 008940 244 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-------------------AEKGVQRRVALALA 304 (548)
Q Consensus 244 ~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-------------------~~~~~~~~a~~aL~ 304 (548)
.+ .+.. ....... +.+... -..+++.+..++.. .+..++..++.++.
T Consensus 167 -~~---~~~~-----~r~~~l~----~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~ 232 (1204)
T 3a6p_A 167 -FQ---TLPP-----QRRRDIQ----QTLTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA 232 (1204)
T ss_dssp -SC---CSCH-----HHHHHHH----HHHHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred -cc---chHH-----HHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence 00 0000 0000000 000000 01122223333322 23456777888888
Q ss_pred hccCCCccceeeecC--CchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940 305 HLCSPDDQRTIFIDG--GGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351 (548)
Q Consensus 305 ~l~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 351 (548)
++...-.... +.+. ..++.++.++. +++++..|+.+|..+....
T Consensus 233 ~~l~Wi~~~~-i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 233 GYIDWVSMSH-ITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TTTTTSCHHH-HHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred HHHhccCHHH-HHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 7765433211 1222 26677776665 5788999999999998753
No 170
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=82.20 E-value=28 Score=33.02 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh
Q 008940 53 KVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131 (548)
Q Consensus 53 ~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 131 (548)
+.+...+.-+.++..+ ++. +. .++++.++.+-.+++.++|+..+..|...+....+.. ...++.|..++
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps----Ll-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL 109 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT----LL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLL 109 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG----GG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHH----HH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 4677777777776542 232 22 3578899999999999999999999998876444432 23567888888
Q ss_pred hcCChHHHHHHHHHHHHhhcCCchhHHHHHhcC---------------ChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940 132 SSCCSESQREAALLLGQFAATDSDCKVHIVQRG---------------AVRPLIEMLQSPDVQLREMSAFALGRLA 192 (548)
Q Consensus 132 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g---------------~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 192 (548)
.+.++.+.+.++.+..++- +..-+.+...+ +-..++.++.+.+..++..+...+-.+.
T Consensus 110 ~d~d~~V~K~~I~~~tslY---pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQLY---KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp TCSSHHHHHHHHHHHHHHH---HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 8888888888887766653 22222222222 2234555567778889988888877755
No 171
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.64 E-value=1.7 Score=32.73 Aligned_cols=67 Identities=10% Similarity=0.009 Sum_probs=45.0
Q ss_pred CccccchHhHHHHHHHHHHhChHhHHHHHHHHHHhcC------------CHhhHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 008940 442 GSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI------------SLENVSSMYELSEAFHAISLRHTCILYIMEH 509 (548)
Q Consensus 442 ~~~~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l------------~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 509 (548)
+.-.++++|...++.+|+.|++++|.+.|..|+.++. +.+....++.- +..+-..+.+.+++|+..+
T Consensus 4 ~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~s-dv~~E~~vf~av~~Wv~~d 82 (105)
T 2eqx_A 4 GSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISD-GVPCSQNPTEAIEAWINFN 82 (105)
T ss_dssp CCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHT-CEETTSCHHHHHHHHHHTT
T ss_pred hhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcC-CCCCHHHHHHHHHHHHHcC
Confidence 3446789999999999999999999999999997653 33333333321 1112234666666666544
No 172
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=76.56 E-value=2.4 Score=42.41 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=60.7
Q ss_pred ccEEEEeCCeEEEchHHHHhcccHH-HHhhhcC-CCCCCCCCceecCCCCHHHHHHHHHHHhc-CccccchH-hHHHHHH
Q 008940 381 SDVTFLVEGRRFYAHRICLLASSDA-FRAMFDG-GYREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVTLD-IAQDLLR 456 (548)
Q Consensus 381 ~Dv~~~~~~~~~~~h~~il~~~s~~-f~~~~~~-~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-~~~~~~~~-~~~~ll~ 456 (548)
.-+.+.|||..|...+..|....+- +-.++.. .......+++-+ |=+|..|+.+|+|+.+ |++..+.+ ....+.+
T Consensus 52 ~~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~~ 130 (514)
T 2r9r_B 52 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSE 130 (514)
T ss_dssp CEEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHHH
T ss_pred CEEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccCCcccHHHHHH
Confidence 3588899999999999998754321 1111111 111233456666 4599999999999999 99987654 3567899
Q ss_pred HHHHhChHhHH
Q 008940 457 AADQYLLEGLK 467 (548)
Q Consensus 457 ~a~~~~~~~l~ 467 (548)
-|++|+++++.
T Consensus 131 E~~f~~i~~~~ 141 (514)
T 2r9r_B 131 EIRFYELGEEA 141 (514)
T ss_dssp HHHHTTCCHHH
T ss_pred HHHhcCCCHHH
Confidence 99999998754
No 173
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=73.18 E-value=50 Score=29.30 Aligned_cols=128 Identities=7% Similarity=0.096 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh
Q 008940 53 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132 (548)
Q Consensus 53 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 132 (548)
+.+...+.-...+..+.+ . . +. .++++.++++..+++.++|+..+..+...+...++.. ...++.|..++.
T Consensus 30 ~~kl~~L~qa~el~~~~d-p-~-ll-~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~Ll~ 100 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSC-A-E-LA-EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSMLLR 100 (257)
T ss_dssp HHHHHHHHHHHHHHTTTT-G-G-GH-HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccC-H-h-HH-HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHc
Confidence 577777777777665321 1 1 22 2367777887778889999999999998885544432 235678888888
Q ss_pred cCChHHHHHHHHHHHHhhcCCchhHHHHHhcC---------------ChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRG---------------AVRPLIEMLQSPDVQLREMSAFALGRLA 192 (548)
Q Consensus 133 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g---------------~v~~L~~ll~~~~~~v~~~a~~~L~~l~ 192 (548)
+.++.+.+.+..+..++- +..-+.+...+ .=..++..+.+.+..++..+...+..+.
T Consensus 101 d~d~~V~K~~I~~~~~iY---~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 101 DNSAQVIKRVIQACGSIY---KNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp CSCHHHHHHHHHHHHHHH---HHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 888888888887666553 12222222221 2223444455666677777766666544
No 174
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=70.72 E-value=1.8 Score=34.37 Aligned_cols=37 Identities=5% Similarity=0.011 Sum_probs=29.2
Q ss_pred cCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHh
Q 008940 477 DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKL 513 (548)
Q Consensus 477 ~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~ 513 (548)
.++.+|+..++..|..|+.+.|.+.|.+|+.+++..-
T Consensus 86 ~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~ 122 (135)
T 2yy9_A 86 ALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQ 122 (135)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC------
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCC
Confidence 3678999999999999999999999999999887654
No 175
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=70.70 E-value=3.5 Score=32.12 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=29.4
Q ss_pred CCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 008940 478 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 509 (548)
Q Consensus 478 l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 509 (548)
++.+|+..++..|..|+.+.|.+.|.+|+.+|
T Consensus 95 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 95 LREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 57789999999999999999999999998754
No 176
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=70.08 E-value=17 Score=28.86 Aligned_cols=70 Identities=7% Similarity=0.028 Sum_probs=54.5
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhh
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 108 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~ 108 (548)
++..|.+-|++.++.++..|+..|-.+.... +.....+.....+..++.++...++.|+..++.++..-+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3557788888999999999999998888732 334556666678888888887778899999888887664
No 177
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=66.85 E-value=7.2 Score=30.01 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=29.4
Q ss_pred CCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 008940 478 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 509 (548)
Q Consensus 478 l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 509 (548)
++.+|+..++..|..|+.+.|.+.|.+|+.+.
T Consensus 89 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 120 (121)
T 1buo_A 89 AKAEDLDDLLYAAEILEIEYLEEQCLKMLETI 120 (121)
T ss_dssp CCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 57789999999999999999999999998764
No 178
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=66.82 E-value=47 Score=31.47 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=52.1
Q ss_pred CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008940 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 107 (548)
Q Consensus 38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l 107 (548)
..++.++.+-.+++.++|...+..|...+....+.. ...++.|..+++++++.+.+.++.+..++
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 577888888888899999999999999986333322 23577888888889999999999888877
No 179
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=66.35 E-value=3.2 Score=31.96 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=27.6
Q ss_pred CCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 008940 478 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 509 (548)
Q Consensus 478 l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 509 (548)
++.+|+..++..|..|+.+.|.+.|.+|+.++
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 86 LTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred cCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 67789999999999999999999999998765
No 180
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=65.81 E-value=4.8 Score=30.69 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=27.9
Q ss_pred CCHhhHHHHHHHHHHcCcHHHHHHHHHHHH
Q 008940 478 ISLENVSSMYELSEAFHAISLRHTCILYIM 507 (548)
Q Consensus 478 l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~ 507 (548)
++.+|+..++..|..|+.+.|.+.|.+|+.
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 86 LDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 677899999999999999999999999974
No 181
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=65.71 E-value=6.1 Score=30.30 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=28.3
Q ss_pred cCCHhhHHHHHHHHHHcCcHHHHHHHHHHHH
Q 008940 477 DISLENVSSMYELSEAFHAISLRHTCILYIM 507 (548)
Q Consensus 477 ~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~ 507 (548)
.++.+|+..++..|..|+.+.|.+.|.+|+.
T Consensus 87 ~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 87 SLSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3677899999999999999999999999974
No 182
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=64.38 E-value=10 Score=31.04 Aligned_cols=70 Identities=4% Similarity=0.009 Sum_probs=54.3
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhcc-CChHHHHHHHHHHHHhh
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLV 108 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~~-~~~~v~~~a~~~L~~l~ 108 (548)
++..|.+-|++.++.++..|+..|-.+.... ......+.....++.|+.++.. .++.|+..++.++..-+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 3456778888999999999999999998742 4455567777788888888874 57789988888776654
No 183
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=64.17 E-value=20 Score=29.54 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=56.0
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhcc------CChHHHHHHHHHHHHhhc
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVH 109 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~~------~~~~v~~~a~~~L~~l~~ 109 (548)
++..|.+-+++.++.++..|+..|-.+.... ......+....++..|+.++.. .+..|+..++.++..-+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3457888889999999999999999998742 4455667777889999999862 357899999888877653
No 184
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=63.63 E-value=62 Score=28.69 Aligned_cols=65 Identities=9% Similarity=0.172 Sum_probs=49.2
Q ss_pred CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008940 38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 107 (548)
Q Consensus 38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l 107 (548)
..++.++.+..+++.++|...+..+...+...++.. ...++.|..+++++++.+.+.++.+..++
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 345566666667889999999999999985333222 22577888888888999999999888777
No 185
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=61.82 E-value=12 Score=30.00 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=56.5
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHHhcc------CChHHHHHHHHHHHHhhc
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVH 109 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~ll~~------~~~~v~~~a~~~L~~l~~ 109 (548)
++..|.+-+++.++.++..|+..|-.+... .+.....+....++..|+.++.. .+..|+..++..+..-+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 455788888999999999999999999874 34556777777889999998863 367899998888876653
No 186
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=61.42 E-value=7.1 Score=32.19 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=30.7
Q ss_pred ccchHhHHHHHHHHHHhChHhHHHHHHHHHHhcCC
Q 008940 445 DVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS 479 (548)
Q Consensus 445 ~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~ 479 (548)
.++.+++.+++..|+.|+.+.|++.|.+++.+++.
T Consensus 131 ~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 131 NLSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred hCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999987654
No 187
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=61.28 E-value=9.5 Score=29.17 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=27.2
Q ss_pred CCHhhHHHHHHHHHHcCcHHHHHHHHHHH
Q 008940 478 ISLENVSSMYELSEAFHAISLRHTCILYI 506 (548)
Q Consensus 478 l~~~n~~~~~~~a~~~~~~~L~~~~~~~i 506 (548)
++.+|+..++..|..|+.+.|.+.|.+|+
T Consensus 91 ~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 91 VSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp CCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 57789999999999999999999999986
No 188
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=61.04 E-value=19 Score=28.99 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=55.9
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhcc------CChHHHHHHHHHHHHhhc
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVH 109 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~~------~~~~v~~~a~~~L~~l~~ 109 (548)
++..|.+-+++.++.++..|+..|-.+.... +.....+....++..|++++.. .+..|+..++.++..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 3557888888999999999999999998743 3445667777788999999863 577899999888877653
No 189
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=58.31 E-value=2.3 Score=33.86 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=30.7
Q ss_pred cCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhH
Q 008940 477 DISLENVSSMYELSEAFHAISLRHTCILYIMEHF 510 (548)
Q Consensus 477 ~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 510 (548)
.++.+|+..++..|..|+.+.|.+.|.+|+.+++
T Consensus 100 ~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l 133 (138)
T 2z8h_A 100 ILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKF 133 (138)
T ss_dssp CCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 3678999999999999999999999999998764
No 190
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=57.26 E-value=35 Score=37.15 Aligned_cols=217 Identities=12% Similarity=0.028 Sum_probs=109.6
Q ss_pred ChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC----CCHHHHHHHHHHHHHhhcCCcch
Q 008940 123 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS----PDVQLREMSAFALGRLAQDMHNQ 198 (548)
Q Consensus 123 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~ 198 (548)
.+..|+++..+.-++++..|-.+|.......+..+.. ++|.+++.|+. .+.+-.+-|+.+|.. ..-.+
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~---k~~~~ 205 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLI---KKIHR 205 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTS---HHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhh---hhhhh
Confidence 3557777777888999999999998887665555543 44666666643 344444555554431 10011
Q ss_pred hhhHh----cCChHHHHHhhcCCChhHHHHHHHHHHhcccC---CcchHHHHHhcCcccccccchhhhhhhHHHHHHH-H
Q 008940 199 AGIAH----NGGLVPLLKLLDSKNGSLQHNAAFALYGLADN---EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL-K 270 (548)
Q Consensus 199 ~~~~~----~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~-~ 270 (548)
....+ ...++.|++......+.++..+-.+...+... +.... ......++.+......+.....-..... +
T Consensus 206 ~~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~-~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~ 284 (997)
T 1vsy_5 206 KLMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVC-VISDQAFLPLAPPDGTINLQVEAVKLAKKK 284 (997)
T ss_dssp HGGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCC-CCCGGGTGGGCCSCSSTTSHHHHHHHHTTH
T ss_pred HHhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHH-HHHHHHHhccCCCcHHHHHHHHHHHHHHHH
Confidence 11111 12344455555555666665555443333321 11110 0111111111110000000000000111 1
Q ss_pred HHHHhhh--hhhhHHHHHHHHh-hh--hhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHH
Q 008940 271 RLEEKIH--GRVLNHLLYLMRV-AE--KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 345 (548)
Q Consensus 271 ~~~~~~~--~~~~~~L~~ll~~-~~--~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 345 (548)
+.....+ .+....++.+.++ .. ......++..|.++....+ ......++..+++.+.+++|.+|..|..++.
T Consensus 285 ~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d---~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~ 361 (997)
T 1vsy_5 285 KREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE---SKPDKRAVFSIISQISTKHPEIIHLVVKSLL 361 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS---CCCCHHHHHHHHGGGGGCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 1111111 2344555566532 34 6666777777666654332 2334467888999999999999999998887
Q ss_pred HHhhhc
Q 008940 346 KLANKA 351 (548)
Q Consensus 346 ~l~~~~ 351 (548)
.+....
T Consensus 362 ~il~~~ 367 (997)
T 1vsy_5 362 STCNKI 367 (997)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 191
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=55.27 E-value=13 Score=29.55 Aligned_cols=69 Identities=7% Similarity=0.099 Sum_probs=52.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc--hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 233 (548)
Q Consensus 165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 233 (548)
++..+...+.+.++.++..|+..|-.+..+... +..+.....+..+..++...++.|+..++..+..-+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 566777888889999999999988888877654 344545556777778887778899998888877654
No 192
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=53.67 E-value=17 Score=29.68 Aligned_cols=69 Identities=3% Similarity=0.042 Sum_probs=52.3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc--hhhhHhcCChHHHHHhhcC-CChhHHHHHHHHHHhcc
Q 008940 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLA 233 (548)
Q Consensus 165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~ 233 (548)
++..|...|.+.++.++..|+..|-.+..+... +..+.....+..+..++.. .++.|+..++..+..-+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 556788888899999999999999998877654 3455555677778888865 56788888888776554
No 193
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=51.63 E-value=21 Score=28.65 Aligned_cols=69 Identities=19% Similarity=0.168 Sum_probs=54.3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc--hhhhHhcCChHHHHHhhcC------CChhHHHHHHHHHHhcc
Q 008940 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDS------KNGSLQHNAAFALYGLA 233 (548)
Q Consensus 165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~ 233 (548)
++..+...+++.++.++..|+..|-.+..+... +..+.....+..|..++.. .++.|+..++..+..-+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 567788888899999999999999999987654 4566666778888888864 36788888888776654
No 194
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=49.68 E-value=25 Score=30.58 Aligned_cols=70 Identities=7% Similarity=0.134 Sum_probs=53.2
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHHhh
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLV 108 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~ 108 (548)
++..|.+-|++.++.++..|+..|-.+... .......+....+++.|..+++ ..+..|+..++.++...+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 355678888899999999999999998873 2334556666677788888876 357788888888887665
No 195
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=49.02 E-value=19 Score=32.05 Aligned_cols=103 Identities=9% Similarity=0.091 Sum_probs=64.1
Q ss_pred ccCCHHHHHHHHHHHHHhhccCcc-hhhHhhhcCChHHHHHHhc--------cCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940 48 EFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILMLR--------SEDSAIHYEAVGVIGNLVHSSPNIKKEV 118 (548)
Q Consensus 48 ~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~Lv~ll~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 118 (548)
.+.++..+..+++++.|+-.+ +. .+..+........++..+. .++..++..++.++.|++......+.
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~-~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~-- 176 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNN-ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 176 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTC-TTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--
T ss_pred CCCchhHHHHHHHHHHHcccC-CchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--
Confidence 345678999999999999974 55 5555554433444454432 13567888889999999753111000
Q ss_pred HhcCChHHHHHhhhc---------CChHHHHHHHHHHHHhhcCCc
Q 008940 119 LAAGALQPVIGLLSS---------CCSESQREAALLLGQFAATDS 154 (548)
Q Consensus 119 ~~~g~i~~L~~ll~~---------~~~~~~~~a~~~L~~l~~~~~ 154 (548)
+......++.++.. .+++....++.+|+++...++
T Consensus 177 -~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 177 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp -CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred -hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 11233445555542 367788888999999986543
No 196
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=48.88 E-value=8.4 Score=30.64 Aligned_cols=33 Identities=6% Similarity=0.087 Sum_probs=26.3
Q ss_pred CCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhH
Q 008940 478 ISLENVSSMYELSEAFHAISLRHTCILYIMEHF 510 (548)
Q Consensus 478 l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 510 (548)
++.+++..++..|..|+.+.|.+.|.+|+.+++
T Consensus 91 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l 123 (145)
T 4eoz_A 91 NLDKMADDLLAAADKYALERLKVMCEDALCSNL 123 (145)
T ss_dssp TGGGTHHHHHHHHHHTTCHHHHHHHHCC-----
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence 567899999999999999999999999998754
No 197
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=47.97 E-value=8.9 Score=30.64 Aligned_cols=29 Identities=7% Similarity=0.356 Sum_probs=27.0
Q ss_pred CCHhhHHHHHHHHHHcCcHHHHHHHHHHH
Q 008940 478 ISLENVSSMYELSEAFHAISLRHTCILYI 506 (548)
Q Consensus 478 l~~~n~~~~~~~a~~~~~~~L~~~~~~~i 506 (548)
++.+|+..++..|..|+.+.|++.|.+|+
T Consensus 115 i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 115 LNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 67889999999999999999999999875
No 198
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=47.64 E-value=61 Score=29.03 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=44.6
Q ss_pred ccchHhHHHHHHHHHHhChHhHHHHHHHHHHhc------------CCHhhHHHHHHHHHHc---CcHHHHHHHHHHHHHh
Q 008940 445 DVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQD------------ISLENVSSMYELSEAF---HAISLRHTCILYIMEH 509 (548)
Q Consensus 445 ~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~------------l~~~n~~~~~~~a~~~---~~~~L~~~~~~~i~~~ 509 (548)
.++.+++..++..|+.|+.+.|.+.|..++.++ ++.+....++.- ... +-..+.+.+..|+..+
T Consensus 138 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~-d~L~v~sE~~vf~av~~W~~~~ 216 (279)
T 3i3n_A 138 KLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSD-LEITVDSEEVLFETVLKWVQRN 216 (279)
T ss_dssp HCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSCHHHHHHHHTC-SSCCCSCHHHHHHHHHHHHHTT
T ss_pred cCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCCHHHHHHHhcC-cCCCCCCHHHHHHHHHHHHHcC
Confidence 367789999999999999999999999988654 233333333221 111 2346778888888744
No 199
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=46.81 E-value=27 Score=28.07 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=54.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc--hhhhHhcCChHHHHHhhcC------CChhHHHHHHHHHHhccc
Q 008940 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDS------KNGSLQHNAAFALYGLAD 234 (548)
Q Consensus 165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~ 234 (548)
++..|...+.+.++.++..|+..|-.+..+... +..+....++..|..++.. .++.|+..++..+..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 566788888899999999999999999877754 4556666677888888863 467888888888876653
No 200
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=45.42 E-value=15 Score=28.10 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=27.7
Q ss_pred cCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHH
Q 008940 477 DISLENVSSMYELSEAFHAISLRHTCILYIME 508 (548)
Q Consensus 477 ~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~ 508 (548)
.++.+|+..++..|..|+.+.|.+.|.+++..
T Consensus 86 ~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 86 ELQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp EECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 36789999999999999999999999998754
No 201
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=45.19 E-value=22 Score=31.62 Aligned_cols=133 Identities=11% Similarity=0.054 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH-hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc
Q 008940 55 QRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 133 (548)
Q Consensus 55 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~ 133 (548)
+..++-.++-++.+ +... +.+..++.. +.+.++..+..++++++|+..+....+..+........++..+.+
T Consensus 71 ~fP~lDllRl~~~~-~~~~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKK-LPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGG-CSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcC-CchH------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 55566666666653 3221 233333322 234567899999999999987654245555433223344443321
Q ss_pred --------CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC---------CCHHHHHHHHHHHHHhhcCCc
Q 008940 134 --------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS---------PDVQLREMSAFALGRLAQDMH 196 (548)
Q Consensus 134 --------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~---------~~~~v~~~a~~~L~~l~~~~~ 196 (548)
.+..++..++..+.|++......+. +......+++.+.. ++++....++-+|+++...++
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 2345667777788888743111000 11223344444431 377889999999999986544
Q ss_pred c
Q 008940 197 N 197 (548)
Q Consensus 197 ~ 197 (548)
.
T Consensus 221 ~ 221 (253)
T 3gae_A 221 T 221 (253)
T ss_dssp G
T ss_pred H
Confidence 3
No 202
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=44.22 E-value=26 Score=28.86 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=53.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc--hhhhHhcCChHHHHHhhcC------CChhHHHHHHHHHHhcc
Q 008940 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDS------KNGSLQHNAAFALYGLA 233 (548)
Q Consensus 165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~ 233 (548)
++..|...+++.++.++..|+..|-.+..+... +..+.....+..|..++.. .+..|+..++..+..-+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 557788888999999999999999999987643 4556666778888888863 35788888888776654
No 203
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=43.53 E-value=48 Score=26.82 Aligned_cols=64 Identities=5% Similarity=0.008 Sum_probs=46.0
Q ss_pred cchHhHHHHHHHHHHhCh---------------HhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhH
Q 008940 446 VTLDIAQDLLRAADQYLL---------------EGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHF 510 (548)
Q Consensus 446 ~~~~~~~~ll~~a~~~~~---------------~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 510 (548)
++...+..+++.+.+..- ..+..--.+|+ .++.++++.++..|...+...|.+.|.+|++..+
T Consensus 49 V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i 126 (159)
T 2ast_A 49 VNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVDQGTLFELILAANYLDIKGLLDVTCKTVANMI 126 (159)
T ss_dssp SCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHT--CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHH--cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345566677777766541 11222233444 3899999999999999999999999999998755
Q ss_pred H
Q 008940 511 D 511 (548)
Q Consensus 511 ~ 511 (548)
.
T Consensus 127 ~ 127 (159)
T 2ast_A 127 K 127 (159)
T ss_dssp S
T ss_pred c
Confidence 4
No 204
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=42.46 E-value=19 Score=33.05 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=30.3
Q ss_pred cchHhHHHHHHHHHHhChHhHHHHHHHHHHhcCC
Q 008940 446 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS 479 (548)
Q Consensus 446 ~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~ 479 (548)
++.+++..++.+|+.|+++.|++.|.+++..++.
T Consensus 272 ~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 305 (312)
T 3hqi_A 272 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 305 (312)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999987653
No 205
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=41.80 E-value=2.2e+02 Score=27.31 Aligned_cols=102 Identities=10% Similarity=0.093 Sum_probs=64.8
Q ss_pred cCCHHHHHHHHHHHHHhhccCcc-hhhHhhhcCChHHHHHHhc--------cCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940 49 FTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILMLR--------SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119 (548)
Q Consensus 49 ~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~Lv~ll~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 119 (548)
...+..+..+++++.|+-. ++. .+..+........++..+. ..+..++..++.++.|++......+ .
T Consensus 273 ~~~~an~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~---~ 348 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---S 348 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---S
T ss_pred CCChhHHHHHHHHHHHhcC-CcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---c
Confidence 4568899999999999997 455 3444433323455565543 1245788888889999975311100 0
Q ss_pred hcCChHHHHHhhh---------cCChHHHHHHHHHHHHhhcCCc
Q 008940 120 AAGALQPVIGLLS---------SCCSESQREAALLLGQFAATDS 154 (548)
Q Consensus 120 ~~g~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~ 154 (548)
+......+..++. ..+++....++.+|++|....+
T Consensus 349 ~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 349 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 1123445666665 2478888999999999985443
No 206
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=39.71 E-value=4.7 Score=31.55 Aligned_cols=33 Identities=0% Similarity=0.059 Sum_probs=23.5
Q ss_pred cCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 008940 477 DISLENVSSMYELSEAFHAISLRHTCILYIMEH 509 (548)
Q Consensus 477 ~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 509 (548)
.++.+|+..++..|..|+.+.|.+.|.+|+.+.
T Consensus 95 ~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 95 SMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp ECCTTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 478899999999999999999999999999764
No 207
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.61 E-value=35 Score=29.50 Aligned_cols=70 Identities=4% Similarity=0.064 Sum_probs=52.0
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhcc-CChHHHHHHHHHHHHhh
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLV 108 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~~-~~~~v~~~a~~~L~~l~ 108 (548)
++..|.+-|++.++.++..|+..|-.+.... +.....+.....++.|+.++.+ .+..++..++..+..-+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3456777888999999999999999998743 3344566666778888888763 46788888777766554
No 208
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=37.56 E-value=32 Score=17.11 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=16.8
Q ss_pred HHHHHHHHcCcHHHHHHHHHH
Q 008940 485 SMYELSEAFHAISLRHTCILY 505 (548)
Q Consensus 485 ~~~~~a~~~~~~~L~~~~~~~ 505 (548)
.++.+|..++.++|...|+.-
T Consensus 3 kvmcyaqrhsspellrrcldn 23 (26)
T 2plx_B 3 KVMCYAQRHSSPELLRRCLDN 23 (26)
T ss_dssp HHHHHHBCCCCHHHHHHHHHH
T ss_pred eEEeehhhcCCHHHHHHHHhc
Confidence 456788899999999888753
No 209
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=37.38 E-value=1.5e+02 Score=23.26 Aligned_cols=81 Identities=6% Similarity=0.016 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCccc---cchHhHHHHHHHHHHhChH---------------hHHHHHHHHHHhcCCHhhHHHHHHHHH
Q 008940 430 EVFELMMRFIYTGSVD---VTLDIAQDLLRAADQYLLE---------------GLKRLCEYTIAQDISLENVSSMYELSE 491 (548)
Q Consensus 430 ~~~~~~l~~~Yt~~~~---~~~~~~~~ll~~a~~~~~~---------------~l~~~c~~~l~~~l~~~n~~~~~~~a~ 491 (548)
..++.+++-.-.+.++ ++...+..+++.+.+..-. .+..--.+|+ .++.+++++++..|.
T Consensus 25 ~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~vd~~~l~eLi~AAn 102 (141)
T 1fs1_B 25 VTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVDQGTLFELILAAN 102 (141)
T ss_dssp HHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHT--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHH--hCCHHHHHHHHHHHH
Confidence 3556665542123343 3456677777777765511 1222223344 389999999999999
Q ss_pred HcCcHHHHHHHHHHHHHhHHH
Q 008940 492 AFHAISLRHTCILYIMEHFDK 512 (548)
Q Consensus 492 ~~~~~~L~~~~~~~i~~~~~~ 512 (548)
..+...|.+.|.++++..+..
T Consensus 103 yL~I~~Lldl~c~~vA~~ikg 123 (141)
T 1fs1_B 103 YLDIKGLLDVTCKTVANMIKG 123 (141)
T ss_dssp HHTCHHHHHHHHHHHHHHHTT
T ss_pred HHhhhHHHHHHHHHHHHHHcC
Confidence 999999999999999986543
No 210
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=36.97 E-value=1.5e+02 Score=32.27 Aligned_cols=180 Identities=11% Similarity=0.064 Sum_probs=94.1
Q ss_pred chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc----cCChHHHHHHHHHHHH-----hhcC
Q 008940 40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----SEDSAIHYEAVGVIGN-----LVHS 110 (548)
Q Consensus 40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~----~~~~~v~~~a~~~L~~-----l~~~ 110 (548)
+..|+++--+.-++||..|-.+|......-+..+.. +++.+++.|+ +.+.+-.+-|+.+|.. ....
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~ 209 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMT 209 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGG
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhc
Confidence 445666666677899999999998888643444444 4556666664 3455555566665541 1111
Q ss_pred ChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc-----------------------------------h
Q 008940 111 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-----------------------------------D 155 (548)
Q Consensus 111 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-----------------------------------~ 155 (548)
+.. .-...++.+++....+.+.++..+-.+...+..... .
T Consensus 210 d~~-----~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~ 284 (997)
T 1vsy_5 210 DYK-----DIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKK 284 (997)
T ss_dssp CHH-----HHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTH
T ss_pred ChH-----HHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHH
Confidence 111 112345666666555556665555444333332100 0
Q ss_pred hHHHHHh--cCChHHHHHhh-CCCC--HHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHH
Q 008940 156 CKVHIVQ--RGAVRPLIEML-QSPD--VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 230 (548)
Q Consensus 156 ~~~~~~~--~g~v~~L~~ll-~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 230 (548)
.+....+ .+....+++.. .+.. ......++..+.++....+.. .....+..+++.+.++++.++..|..++.
T Consensus 285 ~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~---~~~~~v~~~~~~l~~dhp~~R~~a~~~l~ 361 (997)
T 1vsy_5 285 KREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK---PDKRAVFSIISQISTKHPEIIHLVVKSLL 361 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC---CCHHHHHHHHGGGGGCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 0000000 12233333444 2233 556666666655555332211 11124556778888899999999887774
Q ss_pred hc
Q 008940 231 GL 232 (548)
Q Consensus 231 ~l 232 (548)
.+
T Consensus 362 ~i 363 (997)
T 1vsy_5 362 ST 363 (997)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 211
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=36.60 E-value=42 Score=27.14 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=51.8
Q ss_pred CchHHHHhhc-cCCHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHH-HHHHhc---cCChHHHHHHHHHHHHhh
Q 008940 39 GIPPLVELLE-FTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPT-LILMLR---SEDSAIHYEAVGVIGNLV 108 (548)
Q Consensus 39 ~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~-Lv~ll~---~~~~~v~~~a~~~L~~l~ 108 (548)
++..|.+-|+ ..++.++..|+..|-.+.... +.....+.....++. |++++. +++..|+..++..+..-+
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 3456777787 478999999999999998743 455566777778887 788874 234688888888776654
No 212
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=35.80 E-value=84 Score=29.46 Aligned_cols=103 Identities=10% Similarity=0.089 Sum_probs=64.0
Q ss_pred ccCCHHHHHHHHHHHHHhhccCcc-hhhHhhhcCChHHHHHHhc--------cCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940 48 EFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILMLR--------SEDSAIHYEAVGVIGNLVHSSPNIKKEV 118 (548)
Q Consensus 48 ~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~Lv~ll~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 118 (548)
.+..+..+..+++++.|+-. ++. .+..+........++..+. ..+..++..++.++.|++......+
T Consensus 209 ~~~~~~n~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~--- 284 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--- 284 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCCChhHHHHHHHHHHHhcc-CcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---
Confidence 34568899999999999997 455 3444432222334444432 2256788888889999975311100
Q ss_pred HhcCChHHHHHhhh---------cCChHHHHHHHHHHHHhhcCCc
Q 008940 119 LAAGALQPVIGLLS---------SCCSESQREAALLLGQFAATDS 154 (548)
Q Consensus 119 ~~~g~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~ 154 (548)
........+..++. ..+++....++.+|++|....+
T Consensus 285 ~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~ 329 (362)
T 3l3f_X 285 SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 329 (362)
T ss_dssp SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 01223445666665 2578888999999999985433
No 213
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=35.56 E-value=60 Score=28.60 Aligned_cols=33 Identities=6% Similarity=0.269 Sum_probs=29.4
Q ss_pred cCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 008940 477 DISLENVSSMYELSEAFHAISLRHTCILYIMEH 509 (548)
Q Consensus 477 ~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 509 (548)
.++.+|+..++..|..|+.+.|.+.|.+|+.++
T Consensus 98 ~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~ 130 (256)
T 3hve_A 98 RLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGC 130 (256)
T ss_dssp CCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred cccHhHHHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence 367899999999999999999999999999864
No 214
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=33.72 E-value=81 Score=30.23 Aligned_cols=131 Identities=11% Similarity=0.049 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhhccCcchhhHhhhcCChHHHHH-HhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc
Q 008940 55 QRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 133 (548)
Q Consensus 55 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~ 133 (548)
+..++-.++-+..+ +... +.+..++. .+.+..+..+..++++++|+.......+..+........++..+.+
T Consensus 243 ~FPaLDLLRl~v~~-p~~~------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKK-LPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGG-CSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcC-CchH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 55566677766653 2221 12333332 2334577899999999999986644234444322223445554421
Q ss_pred --------CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC---------CCCHHHHHHHHHHHHHhhcCC
Q 008940 134 --------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---------SPDVQLREMSAFALGRLAQDM 195 (548)
Q Consensus 134 --------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~ 195 (548)
.+..++..++..+.|++......+. +...+..+..++. ..+++....++-||++|....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 2345666777778888743111000 1123345555554 247889999999999998643
No 215
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=32.62 E-value=53 Score=30.79 Aligned_cols=131 Identities=11% Similarity=0.046 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhccCcchhhHhhhcCChHHHHH-HhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh-
Q 008940 55 QRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS- 132 (548)
Q Consensus 55 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~- 132 (548)
+..++-.++-+..+ +... +.+..++. .+.+..+..+..++++++|+..+....+..+........++..+.
T Consensus 180 ~FP~LDLLRl~v~~-~~~~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKK-LPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGG-CSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcC-CChH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 55566666666653 2221 22333332 223456789999999999998664423444432112233344331
Q ss_pred -------cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC---------CCCHHHHHHHHHHHHHhhcCC
Q 008940 133 -------SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---------SPDVQLREMSAFALGRLAQDM 195 (548)
Q Consensus 133 -------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~ 195 (548)
..+..++..++..+.|++......+. +...+..+..++. ..+++....++-||++|....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 12345666777778888743111000 1123345555554 258889999999999998643
No 216
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=30.83 E-value=2.2e+02 Score=23.94 Aligned_cols=112 Identities=14% Similarity=0.045 Sum_probs=60.5
Q ss_pred CChHHHHHhhhc------CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC---CCHHHHHHHHHHHHHhh
Q 008940 122 GALQPVIGLLSS------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS---PDVQLREMSAFALGRLA 192 (548)
Q Consensus 122 g~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~---~~~~v~~~a~~~L~~l~ 192 (548)
..+|.+++.+.+ .+.............+... +.......-...+|.++.++-. +...+|+.|+..+..+|
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N-~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~ 118 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKN-KHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIY 118 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHC-TTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 356666666543 2334444445555555422 2221111222356777776532 22379999999999999
Q ss_pred cCCcchhhhHhcCChHHHHHhhcCC--ChhHHHHHHHHHHhccc
Q 008940 193 QDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLAD 234 (548)
Q Consensus 193 ~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~ 234 (548)
........-........+.+.+.++ +......|+..|..+..
T Consensus 119 ~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 119 DTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred HHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 5543322222333445566555543 45566667777777664
No 217
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=27.82 E-value=4.4e+02 Score=25.75 Aligned_cols=107 Identities=16% Similarity=0.116 Sum_probs=73.8
Q ss_pred HHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChH---HHHHHHHHHHHhhcC
Q 008940 34 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA---IHYEAVGVIGNLVHS 110 (548)
Q Consensus 34 i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~---v~~~a~~~L~~l~~~ 110 (548)
+.+.=.+..++.-|+++++.+...||.++. ....+..+...+++..+++++-+++.. +....=.++..|+++
T Consensus 112 VLevysve~i~~aL~S~~~~l~~~~ckVI~-----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lssd 186 (500)
T 3vld_A 112 VLEVYSAEDLVKALRSEIDPLKVAACRVIE-----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTD 186 (500)
T ss_dssp HHHHSCHHHHHHHHTSSCHHHHHHHHHHHH-----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHhCCHHHHHHHHhcCChHHHHHHHHHhc-----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCch
Confidence 344456777888888888888888888887 366678888899999999999866544 666666677777543
Q ss_pred ChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHH
Q 008940 111 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 147 (548)
Q Consensus 111 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 147 (548)
.-+|+.+.+ ...|.+..+=.+.++.+.......+.
T Consensus 187 -eLirrril~-nnl~lL~~vK~~~~~i~~sRLLdll~ 221 (500)
T 3vld_A 187 -ELIRRRLFD-NNLPYLVSVKGRMETVSFVRLIDFLT 221 (500)
T ss_dssp -HHHHHHHHT-TTHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred -HHHHHHHHH-HhHHHHHHHhcCCCceeHHHHHHHHH
Confidence 545666664 46677776666666554444444333
No 218
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=26.46 E-value=2.4e+02 Score=22.31 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=53.6
Q ss_pred CcchhhHhhhcCChHHHHHHhc------cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC--ChHHHH
Q 008940 69 NDENKNQIVECNALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQR 140 (548)
Q Consensus 69 ~~~~~~~~~~~g~i~~Lv~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~ 140 (548)
....+..+++.|++..+-..|. -++..+|...+.+|.++-.+ ++.+.+.|+-..++.+-.++ +++.++
T Consensus 50 k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~----~e~Lk~SglGkvv~~l~k~~~et~~nk~ 125 (145)
T 2xpp_A 50 SKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH----KEHLVTSGVGKIVYFYSINPKESKEVRA 125 (145)
T ss_dssp CTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC----HHHHHHHCHHHHHHHHHHCTTSCHHHHH
T ss_pred hHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCC----HHHhhcCCCCcchhhhhcCCccCHHHHH
Confidence 4566788899999999999887 24678999999999998422 45566666555555554454 356776
Q ss_pred HHHHHHHHh
Q 008940 141 EAALLLGQF 149 (548)
Q Consensus 141 ~a~~~L~~l 149 (548)
.|-..+..-
T Consensus 126 la~~Li~~W 134 (145)
T 2xpp_A 126 SAKALVQKW 134 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
No 219
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.78 E-value=56 Score=28.31 Aligned_cols=69 Identities=10% Similarity=0.171 Sum_probs=52.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc--hhhhHhcCChHHHHHhhcC-CChhHHHHHHHHHHhcc
Q 008940 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLA 233 (548)
Q Consensus 165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~ 233 (548)
++..|...+.+.++.++..|+..|-.+..+... +..+.....+..|..++.. .++.|+..++..+..-+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 567788888899999999999999999877654 4455555666667777754 46788888888877665
No 220
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=23.36 E-value=75 Score=25.06 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=44.7
Q ss_pred CchHHHHhhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHHhc----cCC--------hHHHHHHHHHHH
Q 008940 39 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLR----SED--------SAIHYEAVGVIG 105 (548)
Q Consensus 39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~ll~----~~~--------~~v~~~a~~~L~ 105 (548)
+++.|.+-|++.++.+..+|+.+|..|+.. ++..+..+... . .+++-+. .++ ..||..|-.++.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~-~--~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRN-S--VAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHT-T--HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHh-H--HHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 445788888888999999999999999963 44444444443 1 2344333 112 467777777776
Q ss_pred Hhhc
Q 008940 106 NLVH 109 (548)
Q Consensus 106 ~l~~ 109 (548)
-|..
T Consensus 127 ll~d 130 (140)
T 1vdy_A 127 AIFS 130 (140)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 6643
No 221
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=21.47 E-value=1.3e+02 Score=24.11 Aligned_cols=70 Identities=11% Similarity=0.072 Sum_probs=49.0
Q ss_pred ChHHHHHHhc-cCChHHHHHHHHHHHHhhcCC-hhHHHHHHhcCChHH-HHHhhhc---CChHHHHHHHHHHHHhh
Q 008940 81 ALPTLILMLR-SEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQP-VIGLLSS---CCSESQREAALLLGQFA 150 (548)
Q Consensus 81 ~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~-L~~ll~~---~~~~~~~~a~~~L~~l~ 150 (548)
++..|.+-++ ..++.++..|+.+|-.+..++ +.....+.....+.. |++++.. ....|+..++..+..-+
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 4567777776 478899999999998887665 445566666677777 7777743 23467777777665554
No 222
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=20.88 E-value=1.1e+02 Score=26.18 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=48.2
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhh
Q 008940 81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFA 150 (548)
Q Consensus 81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~ 150 (548)
++..|.+-|.+.++.++..|+.+|-.+..+.. .....+.....+..|..++.+ .+.+++..++..+..-+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 46667777888999999999999988876653 344555555677777777654 34566666665554443
Done!