Query 008943
Match_columns 548
No_of_seqs 418 out of 1602
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 15:14:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.8 9.7E-20 3.3E-24 139.8 1.8 56 271-330 1-59 (60)
2 1wim_A KIAA0161 protein; ring 99.6 1.5E-16 5.3E-21 134.0 6.1 88 114-204 3-93 (94)
3 2ct7_A Ring finger protein 31; 99.3 1.8E-13 6.1E-18 113.2 -2.3 77 186-266 4-84 (86)
4 2jmo_A Parkin; IBR, E3 ligase, 99.0 5.2E-12 1.8E-16 102.8 -4.8 65 186-254 5-75 (80)
5 4ap4_A E3 ubiquitin ligase RNF 99.0 2.3E-11 7.7E-16 108.0 -2.5 115 115-289 6-126 (133)
6 3hcs_A TNF receptor-associated 98.6 4.5E-08 1.5E-12 90.9 5.5 84 113-224 15-98 (170)
7 2egp_A Tripartite motif-contai 98.4 6.3E-08 2.1E-12 77.9 0.6 57 114-175 10-66 (79)
8 2ecv_A Tripartite motif-contai 98.4 3.7E-07 1.3E-11 74.1 5.2 55 114-174 17-71 (85)
9 2ct2_A Tripartite motif protei 98.3 1.8E-07 6.2E-12 76.7 2.7 61 114-181 13-75 (88)
10 2ysj_A Tripartite motif-contai 98.3 5.8E-07 2E-11 69.0 5.4 45 114-165 18-62 (63)
11 1e4u_A Transcriptional repress 98.3 3E-07 1E-11 74.2 3.7 53 114-175 9-63 (78)
12 2ysl_A Tripartite motif-contai 98.3 1.8E-07 6.2E-12 74.0 2.3 52 114-174 18-69 (73)
13 2ecw_A Tripartite motif-contai 98.3 5.1E-07 1.8E-11 73.2 4.9 56 114-175 17-72 (85)
14 2d8t_A Dactylidin, ring finger 98.3 5.2E-07 1.8E-11 71.1 3.9 54 113-178 12-65 (71)
15 3ztg_A E3 ubiquitin-protein li 98.3 4.1E-07 1.4E-11 75.4 3.4 49 114-172 11-60 (92)
16 2ecy_A TNF receptor-associated 98.3 4.4E-07 1.5E-11 70.4 3.3 51 114-175 13-63 (66)
17 3hct_A TNF receptor-associated 98.2 8.6E-07 2.9E-11 77.2 5.3 84 113-224 15-98 (118)
18 2yu4_A E3 SUMO-protein ligase 98.2 6.3E-07 2.2E-11 74.9 3.8 56 115-174 6-63 (94)
19 3l11_A E3 ubiquitin-protein li 98.2 6.7E-07 2.3E-11 77.4 3.8 52 112-174 11-62 (115)
20 3knv_A TNF receptor-associated 98.2 8.8E-07 3E-11 79.8 4.6 48 114-172 29-76 (141)
21 1rmd_A RAG1; V(D)J recombinati 98.2 6E-07 2E-11 77.8 3.3 83 115-224 22-104 (116)
22 3lrq_A E3 ubiquitin-protein li 98.2 5.2E-07 1.8E-11 76.2 2.3 51 115-176 21-72 (100)
23 2ecm_A Ring finger and CHY zin 98.2 9E-07 3.1E-11 65.8 3.3 48 115-172 4-53 (55)
24 1t1h_A Gspef-atpub14, armadill 98.2 9.5E-07 3.2E-11 70.8 3.3 49 115-174 7-55 (78)
25 1jm7_A BRCA1, breast cancer ty 98.2 8.7E-07 3E-11 76.0 3.3 53 115-176 20-72 (112)
26 2yur_A Retinoblastoma-binding 98.1 2E-06 6.8E-11 68.4 4.9 49 114-172 13-62 (74)
27 2csy_A Zinc finger protein 183 98.1 1.8E-06 6.3E-11 69.7 4.7 48 114-173 13-60 (81)
28 3fl2_A E3 ubiquitin-protein li 98.1 1.1E-06 3.8E-11 77.1 3.2 49 115-174 51-99 (124)
29 2djb_A Polycomb group ring fin 98.1 2.6E-06 8.8E-11 67.3 4.8 50 114-175 13-63 (72)
30 1g25_A CDK-activating kinase a 98.1 4.1E-07 1.4E-11 70.4 0.0 52 116-176 3-57 (65)
31 3ng2_A RNF4, snurf, ring finge 98.1 4.1E-07 1.4E-11 71.4 0.0 52 114-175 8-64 (71)
32 2ecj_A Tripartite motif-contai 98.1 2.5E-06 8.6E-11 64.0 4.1 45 114-165 13-57 (58)
33 4ayc_A E3 ubiquitin-protein li 98.1 1.2E-06 4E-11 78.6 2.6 45 116-172 53-97 (138)
34 2kr4_A Ubiquitin conjugation f 98.1 6.9E-06 2.4E-10 67.2 7.0 50 114-175 12-61 (85)
35 2y43_A E3 ubiquitin-protein li 98.1 1.2E-06 4.1E-11 73.6 2.4 48 115-174 21-69 (99)
36 2xeu_A Ring finger protein 4; 98.0 5.2E-07 1.8E-11 69.1 -0.3 51 115-175 2-57 (64)
37 2ea6_A Ring finger protein 4; 98.0 2.4E-06 8.4E-11 66.4 3.5 50 114-173 13-67 (69)
38 2kiz_A E3 ubiquitin-protein li 98.0 5.2E-06 1.8E-10 64.7 4.9 50 114-173 12-62 (69)
39 1z6u_A NP95-like ring finger p 98.0 3.2E-06 1.1E-10 76.9 3.1 50 115-175 77-126 (150)
40 2ckl_A Polycomb group ring fin 97.9 3.5E-06 1.2E-10 72.0 3.1 47 115-173 14-61 (108)
41 3htk_C E3 SUMO-protein ligase 97.9 6E-06 2E-10 80.9 4.6 55 113-175 178-233 (267)
42 1iym_A EL5; ring-H2 finger, ub 97.9 5.3E-06 1.8E-10 61.6 2.9 48 115-172 4-53 (55)
43 1bor_A Transcription factor PM 97.9 2.4E-06 8.1E-11 64.2 0.6 44 115-173 5-48 (56)
44 2ect_A Ring finger protein 126 97.9 9.1E-06 3.1E-10 65.0 3.9 52 114-175 13-65 (78)
45 1chc_A Equine herpes virus-1 r 97.8 7.1E-06 2.4E-10 63.7 3.0 48 115-173 4-51 (68)
46 1wgm_A Ubiquitin conjugation f 97.8 2.3E-05 7.7E-10 65.9 6.2 50 114-175 20-70 (98)
47 2kre_A Ubiquitin conjugation f 97.8 6.6E-06 2.2E-10 69.5 2.5 49 114-174 27-75 (100)
48 1jm7_B BARD1, BRCA1-associated 97.8 4.3E-06 1.5E-10 72.6 1.2 45 115-173 21-66 (117)
49 2ep4_A Ring finger protein 24; 97.8 1.6E-05 5.3E-10 62.9 4.2 50 114-173 13-63 (74)
50 1x4j_A Ring finger protein 38; 97.8 1.1E-05 3.7E-10 64.1 3.2 50 114-173 21-71 (75)
51 2l0b_A E3 ubiquitin-protein li 97.8 1.4E-05 4.9E-10 66.0 3.8 50 114-173 38-88 (91)
52 1v87_A Deltex protein 2; ring- 97.8 1.7E-05 5.9E-10 68.2 4.2 52 117-173 26-93 (114)
53 2ecn_A Ring finger protein 141 97.7 4.8E-06 1.6E-10 65.2 0.5 46 115-173 14-59 (70)
54 2ckl_B Ubiquitin ligase protei 97.7 1.3E-05 4.4E-10 73.8 3.0 49 114-173 52-101 (165)
55 2c2l_A CHIP, carboxy terminus 97.7 1.6E-05 5.6E-10 78.9 3.2 51 114-175 206-256 (281)
56 4ic3_A E3 ubiquitin-protein li 97.5 2.5E-05 8.7E-10 62.0 1.9 43 115-173 23-66 (74)
57 2f42_A STIP1 homology and U-bo 97.5 4.5E-05 1.5E-09 71.1 3.5 51 114-175 104-154 (179)
58 2ecg_A Baculoviral IAP repeat- 97.4 5.5E-05 1.9E-09 60.1 2.0 43 115-173 24-67 (75)
59 2ct7_A Ring finger protein 31; 97.3 7.3E-05 2.5E-09 61.2 2.0 48 276-328 25-73 (86)
60 2ecl_A Ring-box protein 2; RNF 97.3 0.00011 3.8E-09 59.3 2.9 48 116-173 15-75 (81)
61 2vje_A E3 ubiquitin-protein li 97.2 0.00015 5.2E-09 55.8 2.2 49 113-173 5-56 (64)
62 2y1n_A E3 ubiquitin-protein li 97.1 0.00022 7.5E-09 74.0 3.6 47 117-174 333-379 (389)
63 2yho_A E3 ubiquitin-protein li 97.1 0.00014 4.6E-09 58.6 1.6 43 116-174 18-61 (79)
64 2d8s_A Cellular modulator of i 97.1 0.00043 1.5E-08 55.8 4.5 52 114-173 13-69 (80)
65 2ea5_A Cell growth regulator w 97.0 0.0005 1.7E-08 53.6 3.9 44 114-173 13-57 (68)
66 4ap4_A E3 ubiquitin ligase RNF 97.0 0.0002 6.9E-09 62.6 1.7 54 113-176 69-127 (133)
67 2vje_B MDM4 protein; proto-onc 96.9 0.00035 1.2E-08 53.5 2.3 47 115-173 6-55 (63)
68 2jmo_A Parkin; IBR, E3 ligase, 96.9 0.00036 1.2E-08 56.3 2.4 37 276-312 25-69 (80)
69 3dpl_R Ring-box protein 1; ubi 96.8 0.00059 2E-08 58.0 2.9 48 115-172 36-99 (106)
70 3t6p_A Baculoviral IAP repeat- 96.4 0.00093 3.2E-08 68.7 1.7 43 115-173 294-337 (345)
71 4a0k_B E3 ubiquitin-protein li 96.0 0.0011 3.9E-08 57.3 0.0 48 116-173 48-111 (117)
72 3k1l_B Fancl; UBC, ring, RWD, 96.0 0.0037 1.3E-07 63.4 3.6 60 114-175 306-374 (381)
73 2ct0_A Non-SMC element 1 homol 94.6 0.016 5.4E-07 45.8 2.4 50 115-173 14-63 (74)
74 2bay_A PRE-mRNA splicing facto 94.3 0.017 5.8E-07 43.8 1.9 47 116-174 3-50 (61)
75 1v92_A NSFL1 cofactor P47; 3-h 94.1 0.12 4.2E-06 36.4 6.1 40 51-90 5-44 (46)
76 2dal_A Protein KIAA0794; FAS a 92.5 0.29 9.9E-06 37.1 6.3 42 49-90 13-54 (62)
77 2jun_A Midline-1; B-BOX, TRIM, 92.1 0.053 1.8E-06 45.0 1.8 32 116-148 3-36 (101)
78 3vk6_A E3 ubiquitin-protein li 91.6 0.093 3.2E-06 43.5 2.7 45 118-172 3-47 (101)
79 1wd2_A Ariadne-1 protein homol 91.3 0.07 2.4E-06 40.3 1.5 37 206-246 5-44 (60)
80 2jun_A Midline-1; B-BOX, TRIM, 91.2 0.03 1E-06 46.5 -0.6 75 228-316 17-95 (101)
81 1wj7_A Hypothetical protein (R 90.1 0.57 1.9E-05 39.1 6.1 48 43-90 21-78 (104)
82 1vyx_A ORF K3, K3RING; zinc-bi 89.9 0.27 9.1E-06 36.9 3.6 49 115-173 5-58 (60)
83 2cs3_A Protein C14ORF4, MY039 89.8 0.36 1.2E-05 38.0 4.4 67 113-182 12-88 (93)
84 2dam_A ETEA protein; KIAA0887, 89.5 0.81 2.8E-05 35.1 6.2 41 50-90 17-58 (67)
85 2di0_A Activating signal coint 89.4 0.93 3.2E-05 35.1 6.4 41 50-90 12-53 (71)
86 1z96_A DNA-damage, UBA-domain 87.4 0.98 3.4E-05 30.5 4.9 35 52-87 5-39 (40)
87 1g25_A CDK-activating kinase a 86.7 0.21 7.2E-06 37.6 1.3 33 232-289 24-56 (65)
88 3vk6_A E3 ubiquitin-protein li 85.9 0.35 1.2E-05 40.1 2.2 48 209-290 3-51 (101)
89 3lrq_A E3 ubiquitin-protein li 84.5 0.37 1.3E-05 39.8 1.8 45 209-287 24-69 (100)
90 3e21_A HFAF1, FAS-associated f 83.6 0.88 3E-05 32.1 3.1 38 51-88 5-43 (45)
91 2dzl_A Protein FAM100B; UBA-li 83.1 2.2 7.5E-05 32.6 5.5 37 53-89 19-55 (66)
92 4ayc_A E3 ubiquitin-protein li 82.9 0.31 1.1E-05 42.8 0.7 44 209-287 55-98 (138)
93 1e4u_A Transcriptional repress 82.8 0.29 9.8E-06 38.8 0.4 51 208-288 12-62 (78)
94 2ecy_A TNF receptor-associated 81.9 0.54 1.8E-05 35.4 1.7 49 207-289 15-63 (66)
95 2ckl_B Ubiquitin ligase protei 81.6 0.54 1.8E-05 42.5 1.8 45 209-287 56-101 (165)
96 1t1h_A Gspef-atpub14, armadill 81.5 0.47 1.6E-05 36.9 1.2 46 208-287 9-54 (78)
97 3fl2_A E3 ubiquitin-protein li 81.3 0.57 2E-05 40.1 1.8 46 208-287 53-98 (124)
98 2jrp_A Putative cytoplasmic pr 81.0 0.89 3E-05 36.2 2.6 33 277-311 3-41 (81)
99 1x4j_A Ring finger protein 38; 80.8 0.63 2.2E-05 35.9 1.8 33 233-291 43-75 (75)
100 1ify_A HHR23A, UV excision rep 77.9 4.8 0.00016 28.6 5.5 37 52-89 9-45 (49)
101 1jm7_B BARD1, BRCA1-associated 75.8 1.7 5.7E-05 36.8 3.1 31 208-246 23-53 (117)
102 1bor_A Transcription factor PM 75.4 1.8 6.3E-05 31.4 2.8 27 233-288 23-49 (56)
103 3nw0_A Non-structural maintena 75.2 1.3 4.3E-05 42.8 2.4 50 116-175 180-230 (238)
104 3hct_A TNF receptor-associated 74.9 0.96 3.3E-05 38.4 1.3 30 207-245 18-47 (118)
105 2d8v_A Zinc finger FYVE domain 74.8 1.6 5.6E-05 33.1 2.3 34 114-150 6-40 (67)
106 1pft_A TFIIB, PFTFIIBN; N-term 74.7 1.8 6.3E-05 30.8 2.6 29 275-303 4-34 (50)
107 2ecm_A Ring finger and CHY zin 74.5 1.2 4.1E-05 31.8 1.6 29 233-287 26-54 (55)
108 2ysj_A Tripartite motif-contai 74.3 0.84 2.9E-05 33.9 0.7 31 277-312 21-51 (63)
109 2jne_A Hypothetical protein YF 73.9 1.9 6.4E-05 35.4 2.7 33 277-311 33-71 (101)
110 2k4x_A 30S ribosomal protein S 73.9 1.3 4.5E-05 32.6 1.6 29 275-303 17-46 (55)
111 2g3q_A Protein YBL047C; endocy 73.6 5.8 0.0002 27.2 4.9 37 52-89 5-41 (43)
112 1z6u_A NP95-like ring finger p 73.6 1.3 4.4E-05 39.5 1.8 46 208-287 79-124 (150)
113 3hcs_A TNF receptor-associated 72.4 1.1 3.8E-05 40.5 1.2 32 206-246 17-48 (170)
114 1vq8_Z 50S ribosomal protein L 71.2 1.5 5.2E-05 35.1 1.5 36 275-313 26-62 (83)
115 1rmd_A RAG1; V(D)J recombinati 70.8 1.6 5.5E-05 36.7 1.7 27 209-244 25-51 (116)
116 2ysl_A Tripartite motif-contai 70.5 1.1 3.8E-05 34.1 0.6 32 277-313 21-52 (73)
117 1wfh_A Zinc finger (AN1-like) 70.5 2 6.7E-05 32.6 1.9 27 276-306 15-41 (64)
118 2jr6_A UPF0434 protein NMA0874 70.5 2.3 7.8E-05 32.7 2.4 31 276-306 8-39 (68)
119 4ic3_A E3 ubiquitin-protein li 69.8 1.3 4.6E-05 34.2 1.0 26 233-288 41-67 (74)
120 3j20_Y 30S ribosomal protein S 69.2 1.7 5.7E-05 31.3 1.2 27 275-302 18-46 (50)
121 1fre_A Nuclear factor XNF7; zi 69.1 2.7 9.2E-05 28.5 2.3 26 277-309 4-30 (42)
122 2yrg_A Tripartite motif-contai 68.6 2.5 8.6E-05 31.3 2.2 33 277-316 15-49 (59)
123 1vg5_A RSGI RUH-014, rhomboid 68.4 6.9 0.00024 30.4 4.7 36 53-89 31-66 (73)
124 2did_A Tripartite motif protei 67.9 2.6 9E-05 30.2 2.1 32 277-315 9-42 (53)
125 1oai_A Nuclear RNA export fact 67.8 22 0.00074 26.4 7.2 40 50-89 6-45 (59)
126 2egp_A Tripartite motif-contai 67.4 1.9 6.4E-05 33.3 1.3 32 277-313 13-44 (79)
127 2ct2_A Tripartite motif protei 67.2 1.2 4.2E-05 35.2 0.2 35 277-312 16-50 (88)
128 2csv_A Tripartite motif protei 66.9 2.5 8.5E-05 32.5 1.9 32 277-315 19-51 (72)
129 3ztg_A E3 ubiquitin-protein li 66.8 1 3.5E-05 36.2 -0.4 30 277-311 14-44 (92)
130 1wg2_A Zinc finger (AN1-like) 66.6 2.7 9.1E-05 31.9 1.9 27 276-306 15-41 (64)
131 2jrp_A Putative cytoplasmic pr 66.6 4.4 0.00015 32.2 3.3 26 278-311 33-61 (81)
132 2yur_A Retinoblastoma-binding 66.0 1.8 6.1E-05 33.3 0.9 31 277-312 16-47 (74)
133 1iym_A EL5; ring-H2 finger, ub 65.9 2.3 7.8E-05 30.3 1.5 35 277-313 6-41 (55)
134 1wfl_A Zinc finger protein 216 65.7 2.7 9.3E-05 32.7 1.9 26 277-306 26-51 (74)
135 3ng2_A RNF4, snurf, ring finge 65.1 1.4 4.6E-05 33.4 0.0 36 277-312 11-48 (71)
136 2d8t_A Dactylidin, ring finger 65.0 1.6 5.6E-05 33.2 0.5 31 277-312 16-46 (71)
137 1veg_A NEDD8 ultimate buster-1 64.8 13 0.00046 29.6 5.8 35 54-89 32-66 (83)
138 2yvr_A Transcription intermedi 64.0 2.9 9.9E-05 29.5 1.7 32 277-315 7-40 (50)
139 2djb_A Polycomb group ring fin 63.8 1.8 6.1E-05 33.0 0.5 30 277-311 16-46 (72)
140 2jp7_A MRNA export factor MEX6 63.7 19 0.00066 26.5 6.1 41 49-89 4-44 (57)
141 1v87_A Deltex protein 2; ring- 63.4 2.3 7.8E-05 35.5 1.2 38 233-291 60-97 (114)
142 2ckl_A Polycomb group ring fin 63.4 2 6.7E-05 35.7 0.8 31 277-312 16-47 (108)
143 2dak_A Ubiquitin carboxyl-term 63.2 13 0.00044 27.8 5.3 36 53-89 11-46 (63)
144 1wji_A Tudor domain containing 63.2 12 0.00042 28.1 5.1 37 53-90 11-47 (63)
145 1wfp_A Zinc finger (AN1-like) 62.8 3.2 0.00011 32.3 1.8 28 275-306 24-51 (74)
146 1wff_A Riken cDNA 2810002D23 p 61.9 3.6 0.00012 33.0 1.9 28 276-306 25-52 (85)
147 2c2l_A CHIP, carboxy terminus 61.7 3.4 0.00012 40.0 2.2 29 207-244 208-236 (281)
148 2ecw_A Tripartite motif-contai 61.6 2.4 8.1E-05 33.0 0.9 30 277-311 20-49 (85)
149 2ecn_A Ring finger protein 141 61.3 2.3 8E-05 32.0 0.8 30 277-312 16-45 (70)
150 2ecj_A Tripartite motif-contai 61.2 1.6 5.4E-05 31.5 -0.2 30 277-311 16-45 (58)
151 2xeu_A Ring finger protein 4; 61.1 1.9 6.5E-05 31.6 0.2 36 277-312 4-41 (64)
152 3ddt_A E3 ubiquitin-protein li 60.9 3.4 0.00012 29.0 1.5 32 277-315 7-41 (48)
153 2knz_A Ubiquilin-4; cytoplasm, 60.1 19 0.00065 25.9 5.5 37 52-89 12-49 (53)
154 2y43_A E3 ubiquitin-protein li 60.0 2.2 7.5E-05 34.7 0.4 31 277-312 23-54 (99)
155 3l11_A E3 ubiquitin-protein li 59.6 4.6 0.00016 33.8 2.4 31 277-312 16-46 (115)
156 2dja_A Midline-2; tripartite m 59.1 4.7 0.00016 31.8 2.3 33 277-316 19-54 (84)
157 2y1n_A E3 ubiquitin-protein li 58.6 5.9 0.0002 40.9 3.5 34 230-288 346-379 (389)
158 1wiv_A UBP14, ubiquitin-specif 57.8 23 0.00079 27.3 6.0 35 55-90 33-67 (73)
159 2kiz_A E3 ubiquitin-protein li 57.8 3.2 0.00011 31.2 1.0 34 277-312 15-48 (69)
160 2ect_A Ring finger protein 126 57.7 4.1 0.00014 31.3 1.7 34 277-312 16-49 (78)
161 3knv_A TNF receptor-associated 57.4 2.3 8E-05 37.4 0.2 30 277-311 32-61 (141)
162 2ea6_A Ring finger protein 4; 57.4 2.3 7.9E-05 31.7 0.1 36 277-312 16-53 (69)
163 2ep4_A Ring finger protein 24; 57.3 2.7 9.1E-05 32.1 0.5 34 277-312 16-49 (74)
164 2csy_A Zinc finger protein 183 57.2 2.8 9.7E-05 32.6 0.6 30 277-311 16-45 (81)
165 2yho_A E3 ubiquitin-protein li 57.0 3.3 0.00011 32.5 1.0 26 233-288 35-61 (79)
166 2ecv_A Tripartite motif-contai 56.5 2.8 9.4E-05 32.6 0.5 30 277-311 20-49 (85)
167 3qt1_I DNA-directed RNA polyme 54.6 3.9 0.00013 35.7 1.1 30 205-237 22-55 (133)
168 3bq3_A Defective in cullin ned 54.3 14 0.00049 36.1 5.2 44 47-90 11-54 (270)
169 1jm7_A BRCA1, breast cancer ty 53.6 3.1 0.0001 34.5 0.3 31 277-312 22-52 (112)
170 2d8u_A Ubiquitin ligase TRIM63 53.4 5.7 0.00019 29.5 1.8 33 277-316 9-44 (64)
171 1x4w_A Hypothetical protein FL 52.4 2.4 8.2E-05 32.4 -0.5 28 276-306 15-44 (67)
172 1weo_A Cellulose synthase, cat 52.3 6.8 0.00023 31.6 2.1 53 215-292 21-74 (93)
173 2dai_A Ubadc1, ubiquitin assoc 52.2 26 0.00089 27.8 5.6 36 54-90 32-67 (83)
174 1chc_A Equine herpes virus-1 r 50.9 3.4 0.00012 30.8 0.2 31 276-311 5-36 (68)
175 2jy5_A Ubiquilin-1; UBA, alter 50.6 27 0.00092 25.0 5.0 36 53-89 14-50 (52)
176 2hf1_A Tetraacyldisaccharide-1 49.9 9.2 0.00031 29.3 2.4 27 277-303 9-36 (68)
177 2js4_A UPF0434 protein BB2007; 49.5 9.7 0.00033 29.3 2.5 31 276-306 8-39 (70)
178 2egm_A Tripartite motif-contai 49.2 3.9 0.00013 30.0 0.2 32 277-315 19-52 (57)
179 2dkl_A Trinucleotide repeat co 49.1 34 0.0012 27.3 5.8 38 52-90 22-59 (85)
180 2l0b_A E3 ubiquitin-protein li 48.9 2.8 9.7E-05 33.6 -0.7 35 277-313 41-75 (91)
181 2ecl_A Ring-box protein 2; RNF 48.0 6.2 0.00021 30.9 1.3 24 290-313 39-62 (81)
182 2pk7_A Uncharacterized protein 47.7 11 0.00038 28.9 2.6 27 277-303 9-36 (69)
183 2dah_A Ubiquilin-3; UBA domain 47.0 32 0.0011 24.9 4.9 36 53-89 11-47 (54)
184 2cpw_A CBL-interacting protein 46.3 35 0.0012 25.6 5.2 35 54-89 22-57 (64)
185 1wgl_A TOLL-interacting protei 45.5 28 0.00096 25.7 4.4 38 52-89 10-48 (59)
186 2a01_A Apolipoprotein A-I; fou 45.2 1.9E+02 0.0066 27.3 11.7 66 434-499 165-233 (243)
187 3h0g_I DNA-directed RNA polyme 45.0 14 0.00046 31.2 3.0 28 276-303 4-36 (113)
188 2dag_A Ubiquitin carboxyl-term 44.5 41 0.0014 26.0 5.5 38 53-91 11-49 (74)
189 2yw8_A RUN and FYVE domain-con 44.4 13 0.00045 29.3 2.7 40 269-310 11-52 (82)
190 2ko5_A Ring finger protein Z; 44.1 6.5 0.00022 32.0 0.8 47 115-175 27-74 (99)
191 2f42_A STIP1 homology and U-bo 43.5 20 0.00067 32.8 4.1 31 205-244 104-134 (179)
192 2jny_A Uncharacterized BCR; st 41.9 15 0.0005 28.1 2.4 31 276-306 10-41 (67)
193 3qt1_I DNA-directed RNA polyme 41.3 12 0.00041 32.6 2.1 29 275-303 23-56 (133)
194 4a0k_B E3 ubiquitin-protein li 41.0 5.7 0.0002 33.8 0.0 37 278-314 61-99 (117)
195 1z60_A TFIIH basal transcripti 40.8 8.3 0.00028 28.7 0.9 34 209-249 17-51 (59)
196 3t7l_A Zinc finger FYVE domain 39.8 23 0.00079 28.4 3.5 37 113-149 17-55 (90)
197 3t6p_A Baculoviral IAP repeat- 39.6 16 0.00055 37.0 3.1 27 232-288 311-338 (345)
198 1vej_A Riken cDNA 4931431F19; 39.4 62 0.0021 25.1 5.7 37 52-89 30-67 (74)
199 1dv0_A DNA repair protein HHR2 38.7 11 0.00036 26.6 1.1 36 53-89 6-41 (47)
200 1vek_A UBP14, ubiquitin-specif 37.7 56 0.0019 25.8 5.4 36 54-90 32-68 (84)
201 2xzm_9 RPS31E; ribosome, trans 37.3 16 0.00054 33.8 2.4 29 276-305 113-143 (189)
202 1whc_A RSGI RUH-027, UBA/UBX 3 37.3 37 0.0013 25.4 4.1 36 54-90 12-48 (64)
203 1odh_A MGCM1; transcription fa 37.2 23 0.00077 31.6 3.2 19 277-301 111-131 (174)
204 1twf_I B12.6, DNA-directed RNA 37.1 14 0.00047 31.6 1.8 28 276-303 4-36 (122)
205 1deq_A Fibrinogen (alpha chain 36.6 2.8E+02 0.0097 28.1 11.5 15 486-500 187-201 (390)
206 2kpi_A Uncharacterized protein 35.7 23 0.00077 25.9 2.5 25 277-303 11-38 (56)
207 3m7n_A Putative uncharacterize 35.3 18 0.00062 33.0 2.4 24 277-302 141-165 (179)
208 3dpl_R Ring-box protein 1; ubi 35.0 11 0.00039 31.2 0.9 25 290-314 64-88 (106)
209 3ghg_A Fibrinogen alpha chain; 34.9 85 0.0029 33.3 7.6 51 432-482 104-156 (562)
210 4esj_A Type-2 restriction enzy 34.0 24 0.00081 33.7 3.0 35 268-303 27-66 (257)
211 2cp9_A EF-TS, EF-TSMT, elongat 34.0 52 0.0018 24.8 4.3 39 53-91 11-49 (64)
212 3nyb_B Protein AIR2; polya RNA 34.0 33 0.0011 27.2 3.5 19 236-254 5-23 (83)
213 1joc_A EEA1, early endosomal a 33.4 25 0.00086 30.1 2.9 39 270-310 62-102 (125)
214 1twf_L ABC10-alpha, DNA-direct 33.4 14 0.00046 28.5 1.0 24 277-301 29-53 (70)
215 3zyq_A Hepatocyte growth facto 33.3 75 0.0026 29.9 6.6 34 116-149 164-199 (226)
216 2lli_A Protein AIR2; RNA surve 31.4 46 0.0016 28.1 4.3 21 234-254 20-41 (124)
217 1joc_A EEA1, early endosomal a 31.1 23 0.0008 30.3 2.3 36 114-149 67-104 (125)
218 2zet_C Melanophilin; complex, 30.7 32 0.0011 30.6 3.2 41 276-317 68-109 (153)
219 1weo_A Cellulose synthase, cat 30.4 52 0.0018 26.5 3.9 49 115-172 15-68 (93)
220 1qxf_A GR2, 30S ribosomal prot 30.4 33 0.0011 26.0 2.7 33 208-243 8-41 (66)
221 2lli_A Protein AIR2; RNA surve 30.0 58 0.002 27.4 4.7 18 237-254 43-60 (124)
222 3u5c_f 40S ribosomal protein S 29.9 26 0.00088 31.1 2.4 30 276-305 118-150 (152)
223 1dvp_A HRS, hepatocyte growth 29.5 26 0.00089 32.9 2.6 32 277-310 162-194 (220)
224 2akl_A PHNA-like protein PA012 29.4 28 0.00096 30.0 2.4 29 274-303 25-54 (138)
225 1wii_A Hypothetical UPF0222 pr 29.3 25 0.00084 28.1 1.9 27 277-303 24-57 (85)
226 3k9o_A Ubiquitin-conjugating e 29.2 61 0.0021 29.9 5.1 36 53-89 165-200 (201)
227 1z2q_A LM5-1; membrane protein 29.1 27 0.00092 27.6 2.2 36 113-148 18-55 (84)
228 1ee8_A MUTM (FPG) protein; bet 28.8 25 0.00086 34.2 2.3 24 277-300 236-262 (266)
229 2xzf_A Formamidopyrimidine-DNA 28.5 21 0.00073 34.7 1.8 24 277-300 243-269 (271)
230 1wr1_B Ubiquitin-like protein 28.5 1.4E+02 0.0049 21.7 5.9 37 52-89 18-55 (58)
231 2yw8_A RUN and FYVE domain-con 28.3 26 0.00089 27.5 2.0 34 115-148 18-53 (82)
232 1y02_A CARP2, FYVE-ring finger 28.2 21 0.00074 30.4 1.5 38 112-149 15-54 (120)
233 1otr_A Protein CUE2; protein-p 28.2 1.3E+02 0.0044 21.3 5.4 38 52-89 5-43 (49)
234 1zbd_B Rabphilin-3A; G protein 27.8 21 0.00072 31.0 1.4 27 118-144 57-86 (134)
235 3j20_W 30S ribosomal protein S 27.5 39 0.0013 25.3 2.6 33 208-243 16-49 (63)
236 2bwb_A Ubiquitin-like protein 27.5 1.4E+02 0.0049 20.5 5.5 36 52-88 8-44 (46)
237 3htk_C E3 SUMO-protein ligase 27.4 21 0.00072 34.7 1.5 30 277-311 182-212 (267)
238 1dl6_A Transcription factor II 27.3 36 0.0012 25.0 2.4 26 276-301 11-38 (58)
239 3u6p_A Formamidopyrimidine-DNA 27.1 23 0.00078 34.6 1.7 24 277-300 246-272 (273)
240 1k82_A Formamidopyrimidine-DNA 26.8 24 0.00082 34.3 1.8 24 277-300 241-267 (268)
241 3mjh_B Early endosome antigen 26.4 17 0.00059 23.8 0.5 14 114-127 3-16 (34)
242 2jne_A Hypothetical protein YF 26.3 51 0.0017 27.0 3.3 26 277-309 62-89 (101)
243 1k3x_A Endonuclease VIII; hydr 25.9 26 0.00087 34.0 1.8 24 277-300 235-261 (262)
244 2xzm_6 RPS27E; ribosome, trans 25.2 43 0.0015 26.4 2.6 34 208-244 33-67 (81)
245 2dhy_A CUE domain-containing p 24.7 1.5E+02 0.0053 22.3 5.6 38 52-89 19-57 (67)
246 3h0g_I DNA-directed RNA polyme 24.3 40 0.0014 28.2 2.5 30 206-238 3-36 (113)
247 3e46_A Ubiquitin-conjugating e 24.2 1.1E+02 0.0037 29.4 5.9 36 53-89 217-252 (253)
248 1wff_A Riken cDNA 2810002D23 p 24.2 68 0.0023 25.6 3.6 28 115-142 24-51 (85)
249 1qkl_A RPB6, DNA-directed RNA 24.1 2.3E+02 0.0078 24.2 7.1 25 35-59 50-74 (127)
250 2lbm_A Transcriptional regulat 23.9 1.5E+02 0.005 25.9 6.2 47 116-170 63-116 (142)
251 2l2d_A OTU domain-containing p 23.9 1.9E+02 0.0065 21.6 5.7 38 51-88 17-54 (73)
252 3iz6_X 40S ribosomal protein S 23.8 66 0.0022 25.6 3.4 43 208-253 37-80 (86)
253 2ekk_A UBA domain from E3 ubiq 23.7 1.2E+02 0.0042 20.7 4.7 34 54-89 12-45 (47)
254 3zyq_A Hepatocyte growth facto 22.9 40 0.0014 31.8 2.5 32 277-310 165-197 (226)
255 1twf_I B12.6, DNA-directed RNA 22.5 46 0.0016 28.2 2.6 30 206-238 3-36 (122)
256 2zet_C Melanophilin; complex, 22.3 34 0.0012 30.4 1.7 31 115-145 67-100 (153)
257 1x4u_A Zinc finger, FYVE domai 22.1 38 0.0013 26.7 1.8 35 114-148 12-48 (84)
258 3h0g_L DNA-directed RNA polyme 22.0 36 0.0012 25.6 1.5 24 278-302 23-47 (63)
259 3s84_A Apolipoprotein A-IV; fo 21.8 5.4E+02 0.018 24.7 13.2 128 333-499 65-200 (273)
260 1vfy_A Phosphatidylinositol-3- 21.3 41 0.0014 25.7 1.8 32 117-148 12-45 (73)
261 2gvi_A Conserved hypothetical 21.1 57 0.0019 30.3 3.1 64 81-147 138-202 (204)
262 2lbc_A Ubiquitin carboxyl-term 21.0 1.3E+02 0.0046 25.3 5.3 35 54-89 81-115 (126)
263 2o35_A Hypothetical protein DU 20.3 38 0.0013 27.8 1.4 17 139-155 42-58 (105)
264 2a20_A Regulating synaptic mem 20.0 45 0.0015 24.7 1.6 35 277-312 10-44 (62)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.76 E-value=9.7e-20 Score=139.78 Aligned_cols=56 Identities=50% Similarity=1.156 Sum_probs=48.8
Q ss_pred HHHhCCcCCCCCCcceeecCCCCceEec---ccccccccccccccCCCCccccCCccCCCCcc
Q 008943 271 WITVHTKPCPKCHKPVEKNGGCNLVSCI---CGQAFCWLCGGATGRDHTWSRIAGHSCGRYKE 330 (548)
Q Consensus 271 ~i~~~tK~CPkC~~~IEKn~GCnhMtC~---C~~~FCw~C~~~~~~~H~w~~~~g~~C~~y~~ 330 (548)
||.+++|+||+|+++|||++|||||+|+ |+++|||+|+++|.. |+ ...|+||+|++
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~-~~---~~~y~C~~y~~ 59 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP-HG---SAWYNCNRYNE 59 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG-GG---TSSSSSCSCCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc-CC---CccccCCCccc
Confidence 7889999999999999999999999995 999999999999753 21 23589999975
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.64 E-value=1.5e-16 Score=134.00 Aligned_cols=88 Identities=20% Similarity=0.479 Sum_probs=78.9
Q ss_pred ccccccccccccccccCceec-CCCCccchhhHHHHHHhhhccCCccceecCccccccc--cchHHHHHhhccCChhHHH
Q 008943 114 SSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAI--CDEAVVRNLVSKKHPNLAE 190 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~--i~~~~i~~ll~~~~~e~~~ 190 (548)
++.++|+||+++++...++.+ +|||.||++||++||..+|.+|...+++||.++|... ++...++.+++ +++++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~---~~~~~ 79 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVA---AEIMQ 79 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSC---HHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCC---HHHHH
Confidence 356899999999876666776 6999999999999999999988767899999999999 99999999998 89999
Q ss_pred HHHHHHHHHhhhcC
Q 008943 191 KFERFLLESFIEDN 204 (548)
Q Consensus 191 ky~~~l~~~~v~~~ 204 (548)
+|.++++++|++++
T Consensus 80 ky~~~~~~~~v~~~ 93 (94)
T 1wim_A 80 RYKKLQFERSGPSS 93 (94)
T ss_dssp HHHHHHHHSSCSSC
T ss_pred HHHHHHHHhhhccC
Confidence 99999999988754
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.27 E-value=1.8e-13 Score=113.23 Aligned_cols=77 Identities=23% Similarity=0.526 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHhhhcCcccccCCCCCCCCceEEeccCceeeeecc-CCCccccCcCccC---CCCCCchhhHHHHHh
Q 008943 186 PNLAEKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEA---HSPCSCSMWDLWAKK 261 (548)
Q Consensus 186 ~e~~~ky~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~~~~---H~p~~C~~~~~w~~~ 261 (548)
++++++|++++++++|..++.++||| +|+.++...+. ...|+|+ |+..||+.|+.+| |.|.+|..+++|.++
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP---~C~~~~~~~~~-~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA---QCSFGFIYERE-QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS---SSCCCEECCCS-CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc---CCCchheecCC-CCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 56788999999999999999999999 79999876654 4568998 9999999999999 999999999999987
Q ss_pred hhchH
Q 008943 262 CRDES 266 (548)
Q Consensus 262 ~~~e~ 266 (548)
...++
T Consensus 80 n~~~~ 84 (86)
T 2ct7_A 80 NSGPS 84 (86)
T ss_dssp HTCSS
T ss_pred Ccccc
Confidence 65554
No 4
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.01 E-value=5.2e-12 Score=102.84 Aligned_cols=65 Identities=26% Similarity=0.615 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHHhhhcCcccccCCCCCCCCceEEeccCceeeeec------cCCCccccCcCccCCCCCCchh
Q 008943 186 PNLAEKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEEVEVCEVEC------ACGAQFCFSCLSEAHSPCSCSM 254 (548)
Q Consensus 186 ~e~~~ky~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C------~Cg~~fC~~C~~~~H~p~~C~~ 254 (548)
++++++|++++++++|+.+. ++||| .|+|+.++...+ ....+.| .|++.||+.|+.+||. .+|..
T Consensus 5 ~~~~~rY~~~~~e~~v~~~~-~~~CP-~p~C~~~v~~~~-~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 5 EEQYNRYQQYGAEECVLQMG-GVLCP-RPGCGAGLLPEP-DQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCSCCCSSSCCSSCCCS-SCCCC-SSSCCCCCCCCS-CTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred HHHHHHHHHHHHHHHhhhCC-cEECC-CCCCCcccEECC-CCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 78889999999999999886 99999 699999998765 3345899 5999999999999999 99975
No 5
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.97 E-value=2.3e-11 Score=108.01 Aligned_cols=115 Identities=25% Similarity=0.566 Sum_probs=77.0
Q ss_pred cccccccccccccc-----cCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchHHHHHhhccCChhHH
Q 008943 115 STVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLA 189 (548)
Q Consensus 115 ~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~e~~ 189 (548)
+.++|+||++.+.. ..++.++|||.||..||..|+... ..||. |...+....+..+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~l~~l~-------- 67 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPIY-------- 67 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--------SBCTT--TCCBCTTTCEEECB--------
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC--------CCCCC--CCCcCccccccccc--------
Confidence 46899999999742 122788999999999999998742 38998 88877654322211
Q ss_pred HHHHHHHHHHhhhcCcccccCCCCCCCCceEEecc-CceeeeeccCCCccccCcCccCCCCCCchhhHHHHHhhhchHHH
Q 008943 190 EKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEE-VEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESET 268 (548)
Q Consensus 190 ~ky~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~-~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~ 268 (548)
.+.....|| -|...+.... .....+..+||+.||..|... |..
T Consensus 68 -------------i~~~~~~C~---iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~------------~~~-------- 111 (133)
T 4ap4_A 68 -------------IGSGTVSCP---ICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD------------SLK-------- 111 (133)
T ss_dssp -------------CSSSSCBCT---TTCCBHHHHHHTTCCEEEETTSBEEEHHHHHH------------HHH--------
T ss_pred -------------cCCCCCCCC---CCCCccccccccCcceEeCCCCChhhHHHHHH------------HHH--------
Confidence 122344687 5865544211 112235667999999999653 221
Q ss_pred HHHHHhCCcCCCCCCcceeec
Q 008943 269 VNWITVHTKPCPKCHKPVEKN 289 (548)
Q Consensus 269 ~~~i~~~tK~CPkC~~~IEKn 289 (548)
. .+.||.|+..|.++
T Consensus 112 -----~-~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 112 -----N-ANTCPTCRKKINHK 126 (133)
T ss_dssp -----H-CSBCTTTCCBCCGG
T ss_pred -----c-CCCCCCCCCcCChh
Confidence 1 27999999999865
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.57 E-value=4.5e-08 Score=90.91 Aligned_cols=84 Identities=26% Similarity=0.511 Sum_probs=57.8
Q ss_pred cccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchHHHHHhhccCChhHHHHH
Q 008943 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLAEKF 192 (548)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~e~~~ky 192 (548)
..+.+.|+||++.+. +++.++|||.||..|+..++... ..+||. |...+.... +.. ...
T Consensus 15 ~~~~~~C~IC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~---~~~---~~~---- 73 (170)
T 3hcs_A 15 LESKYECPICLMALR--EAVQTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQ---LFP---DNF---- 73 (170)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGG---CEE---CHH----
T ss_pred CCCCCCCCCCChhhc--CcEECCCCCHHHHHHHHHHHHhC-------CCCCCC--CccCcchhh---hhh---hHH----
Confidence 346799999999874 67889999999999999999753 138998 887776532 222 111
Q ss_pred HHHHHHHhhhcCcccccCCCCCCCCceEEecc
Q 008943 193 ERFLLESFIEDNKMVKWCPSTPHCGNAIRVEE 224 (548)
Q Consensus 193 ~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 224 (548)
++..+. .....|| +.+|+..+....
T Consensus 74 ----~~~~i~--~l~v~C~-n~GC~~~~~~~~ 98 (170)
T 3hcs_A 74 ----AKREIL--SLMVKCP-NEGCLHKMELRH 98 (170)
T ss_dssp ----HHHHHH--TSEEECC-STTCCCEEEGGG
T ss_pred ----HHHHHh--hcccCCC-CCCCCceecHhH
Confidence 111112 1345899 479998887654
No 7
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.36 E-value=6.3e-08 Score=77.85 Aligned_cols=57 Identities=25% Similarity=0.568 Sum_probs=44.4
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchH
Q 008943 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~ 175 (548)
.+.++|+||++.+. +++.++|||.||..|+..|+......+. ....||. |...+...
T Consensus 10 ~~~~~C~IC~~~~~--~p~~l~CgH~fC~~Ci~~~~~~~~~~~~-~~~~CP~--Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLT--EPLSLDCGHSLCRACITVSNKEAVTSMG-GKSSCPV--CGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECS--SCCCCSSSCCCCHHHHSCCCCCCSSSCC-CCCCCSS--SCCCCCSS
T ss_pred ccCCCCcCCCcccC--CeeECCCCCHHHHHHHHHHHHhcccCCC-CCCcCCC--CCCcCCHh
Confidence 35689999999874 6777899999999999999886543322 3578998 88877543
No 8
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=3.7e-07 Score=74.07 Aligned_cols=55 Identities=27% Similarity=0.691 Sum_probs=44.5
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccch
Q 008943 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~ 174 (548)
.+.+.|+||++.+. +++.++|||.||..|+..|+..+...+. ...||. |...+..
T Consensus 17 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~~~~--~~~CP~--Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLT--QPLSLDCGHSFCQACLTANHKKSMLDKG--ESSCPV--CRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCS--SCBCCSSSCCBCTTHHHHHHHHHHHTTS--CCCCTT--TCCSSCS
T ss_pred cCCCCCCCCCcccC--CceeCCCCCHHHHHHHHHHHHHhhcCCC--CCcCCC--CCCccCH
Confidence 35689999999874 5677899999999999999988664433 579998 8887654
No 9
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=1.8e-07 Score=76.69 Aligned_cols=61 Identities=26% Similarity=0.679 Sum_probs=46.4
Q ss_pred ccccccccccccccccC--ceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchHHHHHhh
Q 008943 114 SSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLV 181 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~~i~~ll 181 (548)
.+.++|+||++.+.... ++.++|||.||..|+..|+.... ..+.||. |...+....+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~--Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-----NGVRCPF--CSKITRITSLTQLT 75 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-----SCBCCTT--TCCCBCCSSTTTSE
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-----CCcCCCC--CCCcccchhHHHHH
Confidence 35689999999986332 77889999999999999998641 2478998 98877655554443
No 10
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=5.8e-07 Score=69.01 Aligned_cols=45 Identities=31% Similarity=0.698 Sum_probs=36.5
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCc
Q 008943 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMA 165 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~ 165 (548)
.+.+.|+||++.+. +++.++|||.||..|+..|+... . ...+||.
T Consensus 18 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~--~---~~~~CP~ 62 (63)
T 2ysj_A 18 QEEVICPICLDILQ--KPVTIDCGHNFCLKCITQIGETS--C---GFFKCPL 62 (63)
T ss_dssp CCCCBCTTTCSBCS--SCEECTTSSEECHHHHHHHHHHC--S---SCCCCSC
T ss_pred ccCCCCCcCCchhC--CeEEeCCCCcchHHHHHHHHHcC--C---CCCcCcC
Confidence 45689999999874 67888999999999999999851 1 2467886
No 11
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.32 E-value=3e-07 Score=74.22 Aligned_cols=53 Identities=28% Similarity=0.561 Sum_probs=40.3
Q ss_pred ccccccccccccccccCceec--CCCCccchhhHHHHHHhhhccCCccceecCccccccccchH
Q 008943 114 SSTVMCDICMEEVAGDKATKM--DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l--~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~ 175 (548)
.+.++|+||++.+...++..+ +|||.||..||..++.. + ...||. |...+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~----~---~~~CP~--CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD----E---NGLCPA--CRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS----S---CSBCTT--TCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc----C---CCCCCC--CCCccCCC
Confidence 356899999998754444444 49999999999998753 2 368998 98877543
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.8e-07 Score=73.97 Aligned_cols=52 Identities=29% Similarity=0.701 Sum_probs=41.4
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccch
Q 008943 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~ 174 (548)
.+.+.|+||++.+. +++.++|||.||..|+..|+... .....||. |...+..
T Consensus 18 ~~~~~C~IC~~~~~--~~~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQ--KPVTIDCGHNFCLKCITQIGETS-----CGFFKCPL--CKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCS--SEEECTTCCEEEHHHHHHHCSSS-----CSCCCCSS--SCCCCCC
T ss_pred ccCCEeccCCcccC--CeEEcCCCChhhHHHHHHHHHcC-----CCCCCCCC--CCCcCCc
Confidence 45689999999874 67888999999999999998631 13578998 8877654
No 13
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.30 E-value=5.1e-07 Score=73.22 Aligned_cols=56 Identities=27% Similarity=0.607 Sum_probs=44.2
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchH
Q 008943 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~ 175 (548)
.+.+.|+||++.+. +++.++|||.||..|+..|+......+ ....||. |...+...
T Consensus 17 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~~~--~~~~CP~--Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLK--EPVSADCNHSFCRACITLNYESNRNTD--GKGNCPV--CRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCS--SCEECTTSCCBCHHHHHHHHHHSBCTT--SCBCCTT--TCCCCCTT
T ss_pred ccCCCCcCCChhhC--cceeCCCCCHHHHHHHHHHHHhccCCC--CCCCCCC--CCCcCCHH
Confidence 35689999999874 667889999999999999998754222 2578998 88877643
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=5.2e-07 Score=71.14 Aligned_cols=54 Identities=22% Similarity=0.507 Sum_probs=43.4
Q ss_pred cccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchHHHH
Q 008943 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVR 178 (548)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~~i~ 178 (548)
..+.+.|+||++.+ .+++.++|||.||..|+..|+... ..||. |...+....+.
T Consensus 12 ~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~ 65 (71)
T 2d8t_A 12 SLTVPECAICLQTC--VHPVSLPCKHVFCYLCVKGASWLG--------KRCAL--CRQEIPEDFLD 65 (71)
T ss_dssp SSSCCBCSSSSSBC--SSEEEETTTEEEEHHHHHHCTTCS--------SBCSS--SCCBCCHHHHS
T ss_pred CCCCCCCccCCccc--CCCEEccCCCHHHHHHHHHHHHCC--------CcCcC--cCchhCHhhcc
Confidence 44568999999987 367888999999999999998642 47998 99888766543
No 15
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.26 E-value=4.1e-07 Score=75.38 Aligned_cols=49 Identities=20% Similarity=0.674 Sum_probs=40.1
Q ss_pred ccccccccccccccccCceecC-CCCccchhhHHHHHHhhhccCCccceecCcccccccc
Q 008943 114 SSTVMCDICMEEVAGDKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i 172 (548)
.+.+.|+||++.+. +++.++ |||.||..|+..++... + ...||. |...+
T Consensus 11 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~---~---~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLES---D---EHTCPT--CHQND 60 (92)
T ss_dssp CTTTEETTTTEECS--SCEECTTTCCEECHHHHHHHHHHC---T---TCCCTT--TCCSS
T ss_pred CcCCCCCCCChhhc--CceECCCCCCHHHHHHHHHHHHhc---C---CCcCcC--CCCcC
Confidence 35689999999874 788898 99999999999998742 2 368998 88765
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=4.4e-07 Score=70.40 Aligned_cols=51 Identities=22% Similarity=0.609 Sum_probs=40.6
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchH
Q 008943 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~ 175 (548)
.+.+.|+||++.+. +++.++|||.||..|+..++.. ....||. |...+...
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC--SPKQTECGHRFCESCMAALLSS-------SSPKCTA--CQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEES--SCCCCSSSCCCCHHHHHHHHTT-------SSCCCTT--TCCCCCTT
T ss_pred CcCCCCCCCChHhc--CeeECCCCCHHHHHHHHHHHHh-------CcCCCCC--CCcCCChh
Confidence 35689999999874 6677899999999999999861 2368998 88876543
No 17
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.25 E-value=8.6e-07 Score=77.18 Aligned_cols=84 Identities=26% Similarity=0.511 Sum_probs=57.9
Q ss_pred cccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchHHHHHhhccCChhHHHHH
Q 008943 113 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLAEKF 192 (548)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~e~~~ky 192 (548)
..+.+.|+||++.+. +++.++|||.||..|+..++... ...||. |...+.... +.. ..
T Consensus 15 ~~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~---~~~---~~----- 72 (118)
T 3hct_A 15 LESKYECPICLMALR--EAVQTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQ---LFP---DN----- 72 (118)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGG---CEE---CH-----
T ss_pred CCCCCCCCcCChhhc--CeEECCcCChhhHHHHHHHHhhC-------CCCCCC--CCCCcCHHh---ccc---CH-----
Confidence 346689999999874 67888999999999999998753 138998 888776532 222 11
Q ss_pred HHHHHHHhhhcCcccccCCCCCCCCceEEecc
Q 008943 193 ERFLLESFIEDNKMVKWCPSTPHCGNAIRVEE 224 (548)
Q Consensus 193 ~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 224 (548)
.++..+. .....|| +.+|+..+....
T Consensus 73 ---~l~~~i~--~l~v~C~-n~gC~~~~~~~~ 98 (118)
T 3hct_A 73 ---FAKREIL--SLMVKCP-NEGCLHKMELRH 98 (118)
T ss_dssp ---HHHHHHH--TSEEECS-STTCCCEEEGGG
T ss_pred ---HHHHHHc--cceeECC-CCCCCCEEeeHH
Confidence 1111222 1345899 589998887654
No 18
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.22 E-value=6.3e-07 Score=74.92 Aligned_cols=56 Identities=25% Similarity=0.453 Sum_probs=44.1
Q ss_pred cccccccccccccccCceecC-CCCccchhhHHHHHHhhhccCCccceecCccccccc-cch
Q 008943 115 STVMCDICMEEVAGDKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAI-CDE 174 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~-i~~ 174 (548)
..+.|+||++.+ .+++.++ |||.||+.|+..||...-.. .....||..+|... +..
T Consensus 6 ~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~~~~~~--~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 6 SGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQKR--KKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHHHHHTT--TCCBCCCSTTCCCCCBCG
T ss_pred cEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHHHccCc--CCCCCCCcCcCcccccCH
Confidence 568999999987 4789985 99999999999999864211 13578999999865 543
No 19
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.21 E-value=6.7e-07 Score=77.39 Aligned_cols=52 Identities=25% Similarity=0.650 Sum_probs=42.0
Q ss_pred CcccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccch
Q 008943 112 PLSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (548)
Q Consensus 112 ~~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~ 174 (548)
...+.+.|+||++.+. +++.++|||.||..|+..++.. + ...||. |...+..
T Consensus 11 ~~~~~~~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILV--EPVTLPCNHTLCKPCFQSTVEK----A---SLCCPF--CRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCS--SCEECTTSCEECHHHHCCCCCT----T---TSBCTT--TCCBCHH
T ss_pred CCCCCCCCccCCcccC--ceeEcCCCCHHhHHHHHHHHhH----C---cCCCCC--CCcccCc
Confidence 3446789999999874 7888999999999999998853 1 368998 8887764
No 20
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.20 E-value=8.8e-07 Score=79.76 Aligned_cols=48 Identities=21% Similarity=0.582 Sum_probs=38.9
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCcccccccc
Q 008943 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i 172 (548)
.+.+.|+||++.+. +++.++|||.||..|+..++.. ....||. |...+
T Consensus 29 ~~~~~C~IC~~~~~--~pv~~~CgH~FC~~Ci~~~~~~-------~~~~CP~--Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLR--RPFQAQCGHRYCSFCLASILSS-------GPQNCAA--CVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHGGG-------SCEECHH--HHHTT
T ss_pred CcCcCCCCCChhhc--CcEECCCCCccCHHHHHHHHhc-------CCCCCCC--CCCcc
Confidence 46789999999874 6788999999999999999863 2368998 77644
No 21
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.20 E-value=6e-07 Score=77.83 Aligned_cols=83 Identities=22% Similarity=0.571 Sum_probs=56.2
Q ss_pred cccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchHHHHHhhccCChhHHHHHHH
Q 008943 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLAEKFER 194 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~e~~~ky~~ 194 (548)
+.+.|+||++.+. +++.++|||.||..|+..++... ...||. |...+....+...+ ..+.+
T Consensus 22 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~~~~----~~l~~---- 82 (116)
T 1rmd_A 22 KSISCQICEHILA--DPVETSCKHLFCRICILRCLKVM-------GSYCPS--CRYPCFPTDLESPV----KSFLN---- 82 (116)
T ss_dssp HHTBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCBCCC----HHHHH----
T ss_pred CCCCCCCCCcHhc--CcEEcCCCCcccHHHHHHHHhHC-------cCcCCC--CCCCCCHhhccccH----HHHHH----
Confidence 5689999999874 67889999999999999999762 247998 98887654332111 11111
Q ss_pred HHHHHhhhcCcccccCCCCCCCCceEEecc
Q 008943 195 FLLESFIEDNKMVKWCPSTPHCGNAIRVEE 224 (548)
Q Consensus 195 ~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 224 (548)
.+. ....+||+ .+|+..+....
T Consensus 83 -----~i~--~l~v~C~~-~gC~~~~~~~~ 104 (116)
T 1rmd_A 83 -----ILN--SLMVKCPA-QDCNEEVSLEK 104 (116)
T ss_dssp -----HHH--HCEEECCS-TTCCCEEEHHH
T ss_pred -----HHH--HhcCCCCC-CCCcchhhHhH
Confidence 111 12348994 69988776543
No 22
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.17 E-value=5.2e-07 Score=76.24 Aligned_cols=51 Identities=25% Similarity=0.514 Sum_probs=41.8
Q ss_pred cccccccccccccccCcee-cCCCCccchhhHHHHHHhhhccCCccceecCccccccccchHH
Q 008943 115 STVMCDICMEEVAGDKATK-MDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 176 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~~ 176 (548)
+.+.|+||++.+. +++. ++|||.||..|+..|+... ...||. |...+....
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQ-------RAQCPH--CRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGG
T ss_pred CCCCCccCCcccc--CccccCCCCChhhHHHHHHHHHHC-------cCCCCC--CCCcCCHHH
Confidence 4689999999974 6778 8999999999999999863 158998 888776543
No 23
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.17 E-value=9e-07 Score=65.80 Aligned_cols=48 Identities=27% Similarity=0.643 Sum_probs=38.3
Q ss_pred cccccccccccccc--cCceecCCCCccchhhHHHHHHhhhccCCccceecCcccccccc
Q 008943 115 STVMCDICMEEVAG--DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (548)
Q Consensus 115 ~~~~C~IC~e~~~~--~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i 172 (548)
....|+||++.+.. ..+..++|||.||..|+..|+... ..||. |...+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPL--CSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTT--SCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCC--CCCcC
Confidence 35789999999743 236677999999999999999863 57998 87655
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.15 E-value=9.5e-07 Score=70.81 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=40.5
Q ss_pred cccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccch
Q 008943 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~ 174 (548)
+.+.|+||++.+. +++.++|||.||+.|+..|+.. | ...||. |+..+..
T Consensus 7 ~~~~C~IC~~~~~--~Pv~~~CgH~fc~~Ci~~~~~~----~---~~~CP~--C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMK--DPVIVSTGQTYERSSIQKWLDA----G---HKTCPK--SQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCS--SEEEETTTEEEEHHHHHHHHTT----T---CCBCTT--TCCBCSS
T ss_pred ccCCCCCcccccc--CCEEcCCCCeecHHHHHHHHHH----C---cCCCCC--CcCCCCh
Confidence 4689999999874 7888899999999999999963 2 368998 8877654
No 25
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.15 E-value=8.7e-07 Score=76.04 Aligned_cols=53 Identities=23% Similarity=0.552 Sum_probs=42.1
Q ss_pred cccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchHH
Q 008943 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 176 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~~ 176 (548)
+.+.|+||++.+. +++.++|||.||..|+..++... . ....||. |...+....
T Consensus 20 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~--~---~~~~CP~--Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELIK--EPVSTKCDHIFCKFCMLKLLNQK--K---GPSQCPL--CKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCCS--SCCBCTTSCCCCSHHHHHHHHSS--S---SSCCCTT--TSCCCCTTT
T ss_pred CCCCCcccChhhc--CeEECCCCCHHHHHHHHHHHHhC--C---CCCCCcC--CCCcCCHhh
Confidence 3578999999874 67778999999999999999853 1 2378998 888776543
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.14 E-value=2e-06 Score=68.38 Aligned_cols=49 Identities=20% Similarity=0.674 Sum_probs=39.9
Q ss_pred ccccccccccccccccCceecC-CCCccchhhHHHHHHhhhccCCccceecCcccccccc
Q 008943 114 SSTVMCDICMEEVAGDKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i 172 (548)
...+.|+||++.+. +++.++ |||.||..|+..|+... + ...||. |...+
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~---~---~~~CP~--Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLES---D---EHTCPT--CHQND 62 (74)
T ss_dssp CGGGSCSSSCCCCT--TCEECSSSCCEECTTHHHHHHHHS---S---SSCCSS--SCCSS
T ss_pred CCCCCCcCCChHHh--CCeEcCCCCCHHHHHHHHHHHHhc---C---CCcCCC--CCCcC
Confidence 45689999999874 678898 99999999999999852 1 368998 88753
No 27
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=1.8e-06 Score=69.73 Aligned_cols=48 Identities=29% Similarity=0.683 Sum_probs=39.8
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
...+.|+||++.+. +++.++|||.||..|+..++.. ...||. |...+.
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQ--NPVVTKCRHYFCESCALEHFRA--------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCC--SEEECTTSCEEEHHHHHHHHHH--------CSBCSS--SCCBCC
T ss_pred CCCCCCcCCCchhc--CeeEccCCCHhHHHHHHHHHHC--------CCcCCC--cCcccc
Confidence 34689999999974 6778999999999999999864 247998 888764
No 28
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.11 E-value=1.1e-06 Score=77.10 Aligned_cols=49 Identities=29% Similarity=0.571 Sum_probs=40.5
Q ss_pred cccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccch
Q 008943 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~ 174 (548)
+.++|+||++.+. +++.++|||.||..|+..++.. ....||. |...+..
T Consensus 51 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF--RPITTVCQHNVCKDCLDRSFRA-------QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS--SEEECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCT
T ss_pred cCCCCCcCChHHc--CcEEeeCCCcccHHHHHHHHhH-------CcCCCCC--CCccCCC
Confidence 4588999999874 7888999999999999999972 2358998 8877654
No 29
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=2.6e-06 Score=67.27 Aligned_cols=50 Identities=32% Similarity=0.830 Sum_probs=40.3
Q ss_pred ccccccccccccccccCceec-CCCCccchhhHHHHHHhhhccCCccceecCccccccccchH
Q 008943 114 SSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~ 175 (548)
.+.+.|+||++.+. +++.+ +|||.||..|+..|+.. ...||. |...+...
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYY--------SNRCPK--CNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHH--------CSSCTT--TCCCCCSS
T ss_pred CCCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHc--------CCcCCC--cCcccCcc
Confidence 45689999999874 56676 99999999999999965 257998 88876543
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.10 E-value=4.1e-07 Score=70.39 Aligned_cols=52 Identities=21% Similarity=0.475 Sum_probs=38.4
Q ss_pred ccccccccc-cccccC--ceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchHH
Q 008943 116 TVMCDICME-EVAGDK--ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 176 (548)
Q Consensus 116 ~~~C~IC~e-~~~~~~--~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~~ 176 (548)
..+|+||++ .+.... ++.++|||.||..|+..++.. + ...||. |+..+....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G---AGNCPE--CGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----T---SSSCTT--TCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----C---CCcCCC--CCCcccccc
Confidence 478999999 553221 246799999999999999863 1 368998 888776543
No 31
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.09 E-value=4.1e-07 Score=71.40 Aligned_cols=52 Identities=29% Similarity=0.703 Sum_probs=40.0
Q ss_pred ccccccccccccccc-----cCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchH
Q 008943 114 SSTVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~ 175 (548)
.+...|+||++.+.. ..++.++|||.||..|+..|+... ..||. |...+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCC--CCCccChh
Confidence 356899999998742 122678999999999999998742 37998 88876543
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=2.5e-06 Score=64.01 Aligned_cols=45 Identities=24% Similarity=0.709 Sum_probs=35.3
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCc
Q 008943 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMA 165 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~ 165 (548)
.+...|+||++.+. +++.++|||.||..|+..|+... . ....||.
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~-~----~~~~CP~ 57 (58)
T 2ecj_A 13 QVEASCSVCLEYLK--EPVIIECGHNFCKACITRWWEDL-E----RDFPCPV 57 (58)
T ss_dssp CCCCBCSSSCCBCS--SCCCCSSCCCCCHHHHHHHTTSS-C----CSCCCSC
T ss_pred ccCCCCccCCcccC--ccEeCCCCCccCHHHHHHHHHhc-C----CCCCCCC
Confidence 35689999999974 56778999999999999997641 1 2467886
No 33
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.07 E-value=1.2e-06 Score=78.56 Aligned_cols=45 Identities=31% Similarity=0.730 Sum_probs=37.4
Q ss_pred ccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCcccccccc
Q 008943 116 TVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (548)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i 172 (548)
.++|+||++.+. +++.++|||.||..|+..|+.. ...||. |...+
T Consensus 53 ~~~C~iC~~~~~--~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~ 97 (138)
T 4ayc_A 53 ELQCIICSEYFI--EAVTLNCAHSFCSYCINEWMKR--------KIECPI--CRKDI 97 (138)
T ss_dssp HSBCTTTCSBCS--SEEEETTSCEEEHHHHHHHTTT--------CSBCTT--TCCBC
T ss_pred cCCCcccCcccC--CceECCCCCCccHHHHHHHHHc--------CCcCCC--CCCcC
Confidence 468999999874 7888999999999999999863 247998 87765
No 34
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.07 E-value=6.9e-06 Score=67.21 Aligned_cols=50 Identities=6% Similarity=0.016 Sum_probs=41.2
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchH
Q 008943 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~ 175 (548)
.+.+.|+||++.+ .+++.++|||.||+.|+..||.. ...||. |+..+...
T Consensus 12 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLM--TDPVRLPSGTVMDRSIILRHLLN--------SPTDPF--NRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCCGG
T ss_pred chheECcccCchh--cCCeECCCCCEECHHHHHHHHhc--------CCCCCC--CcCCCChH
Confidence 3579999999987 48899999999999999999974 147998 77766543
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.07 E-value=1.2e-06 Score=73.65 Aligned_cols=48 Identities=25% Similarity=0.661 Sum_probs=39.4
Q ss_pred cccccccccccccccCceec-CCCCccchhhHHHHHHhhhccCCccceecCccccccccch
Q 008943 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~ 174 (548)
+.+.|+||++.+. +++.+ +|||.||..|+..|+.. ...||. |...+..
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSY--------KTQCPT--CCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTT--------CCBCTT--TCCBCCG
T ss_pred CCCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHC--------CCCCCC--CCCcCCh
Confidence 4589999999974 56776 99999999999999874 248998 8887764
No 36
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.04 E-value=5.2e-07 Score=69.14 Aligned_cols=51 Identities=25% Similarity=0.686 Sum_probs=39.5
Q ss_pred cccccccccccccc-----cCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchH
Q 008943 115 STVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (548)
Q Consensus 115 ~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~ 175 (548)
+..+|+||++.+.. ..++.++|||.||..|+..|+.. ...||. |...+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCC--CCccCCcc
Confidence 35789999998742 12367799999999999999875 247998 88877654
No 37
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=2.4e-06 Score=66.37 Aligned_cols=50 Identities=30% Similarity=0.707 Sum_probs=38.6
Q ss_pred cccccccccccccccc-----CceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 114 SSTVMCDICMEEVAGD-----KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~-----~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
.....|+||++.+... .++.++|||.||..|+..|+.. ...||. |...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------CSSCTT--TCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------CCCCCC--CCCccC
Confidence 4568999999987421 1267899999999999999875 247998 877654
No 38
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.01 E-value=5.2e-06 Score=64.74 Aligned_cols=50 Identities=20% Similarity=0.574 Sum_probs=39.1
Q ss_pred ccccccccccccccc-cCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 114 SSTVMCDICMEEVAG-DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~-~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
.....|+||++.+.. ..+..++|||.||..|+..|+... ..||. |...+.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 62 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN--------KKCPI--CRVDIE 62 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCSBSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC--------CCCcC--cCcccc
Confidence 345789999998753 456778999999999999998751 25998 887654
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.95 E-value=3.2e-06 Score=76.89 Aligned_cols=50 Identities=28% Similarity=0.618 Sum_probs=41.2
Q ss_pred cccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchH
Q 008943 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~ 175 (548)
+.+.|+||++.+. +++.++|||.||..|+..++.. ....||. |...+...
T Consensus 77 ~~~~C~IC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY--QPVTTECFHNVCKDCLQRSFKA-------QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS--SEEECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCTT
T ss_pred cCCEeecCChhhc--CCEEcCCCCchhHHHHHHHHHh-------CCCcCCC--CCccCCCC
Confidence 4589999999874 7788999999999999999974 2368998 88877644
No 40
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.95 E-value=3.5e-06 Score=72.01 Aligned_cols=47 Identities=26% Similarity=0.629 Sum_probs=38.7
Q ss_pred cccccccccccccccCceec-CCCCccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
+.+.|+||++.+. +++.+ +|||.||..|+..++... ..||. |...+.
T Consensus 14 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~--Cr~~~~ 61 (108)
T 2ckl_A 14 PHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETS--------KYCPI--CDVQVH 61 (108)
T ss_dssp GGTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTSC--------SBCTT--TCCBSC
T ss_pred CcCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHhC--------CcCcC--CCcccc
Confidence 4689999999874 67776 999999999999998752 57998 877654
No 41
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.92 E-value=6e-06 Score=80.91 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=44.3
Q ss_pred cccccccccccccccccCceec-CCCCccchhhHHHHHHhhhccCCccceecCccccccccchH
Q 008943 113 LSSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (548)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~ 175 (548)
....+.||||++.+ .+|++. .|||.||+.|+..||.. .| ...||..||...+...
T Consensus 178 ~~~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~---~~---~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 178 GKIELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQG---YT---TRDCPQAACSQVVSMR 233 (267)
T ss_dssp SBCCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTT---CS---CEECSGGGCSCEECGG
T ss_pred CceeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHh---CC---CCCCCcccccCcCchh
Confidence 34668999999997 477765 99999999999999974 12 3789999999876543
No 42
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.89 E-value=5.3e-06 Score=61.58 Aligned_cols=48 Identities=25% Similarity=0.619 Sum_probs=37.0
Q ss_pred cccccccccccccc-cCceecC-CCCccchhhHHHHHHhhhccCCccceecCcccccccc
Q 008943 115 STVMCDICMEEVAG-DKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (548)
Q Consensus 115 ~~~~C~IC~e~~~~-~~~~~l~-CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i 172 (548)
+...|+||++.+.. ..+..++ |||.||..|+..|+.. ...||. |...+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--------HSTCPL--CRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--------CCSCSS--SCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--------CCcCcC--CCCEe
Confidence 35789999999754 3356676 9999999999999854 247998 87654
No 43
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.87 E-value=2.4e-06 Score=64.20 Aligned_cols=44 Identities=23% Similarity=0.603 Sum_probs=35.4
Q ss_pred cccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
+.++|+||++.+. +++.++|||.||..|+.. ....||. |...+.
T Consensus 5 ~~~~C~IC~~~~~--~p~~l~CgH~fC~~Ci~~-----------~~~~CP~--Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAK--CPKLLPCLHTLCSGCLEA-----------SGMQCPI--CQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCB--CCSCSTTSCCSBTTTCSS-----------SSSSCSS--CCSSSS
T ss_pred cCCCceEeCCccC--CeEEcCCCCcccHHHHcc-----------CCCCCCc--CCcEee
Confidence 4578999999874 678889999999999866 1368998 877553
No 44
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.85 E-value=9.1e-06 Score=64.95 Aligned_cols=52 Identities=21% Similarity=0.489 Sum_probs=40.1
Q ss_pred cccccccccccccccc-CceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchH
Q 008943 114 SSTVMCDICMEEVAGD-KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~ 175 (548)
.....|+||++.+... .+..++|||.||..|+..|+... ..||. |...+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH--------DSCPV--CRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT--------CSCTT--TCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC--------CcCcC--cCCccCCc
Confidence 3568999999997543 34567999999999999998642 47998 88776543
No 45
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.84 E-value=7.1e-06 Score=63.72 Aligned_cols=48 Identities=25% Similarity=0.612 Sum_probs=37.7
Q ss_pred cccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
....|+||++.+. ..+..++|||.||..|+..|+... ..||. |...+.
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS-NYSMALPCLHAFCYVCITRWIRQN--------PTCPL--CKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC-SCEEETTTTEEESTTHHHHHHHHS--------CSTTT--TCCCCC
T ss_pred CCCCCeeCCcccc-CCcEecCCCCeeHHHHHHHHHhCc--------CcCcC--CChhhH
Confidence 3468999999874 234778999999999999998641 37998 887664
No 46
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.84 E-value=2.3e-05 Score=65.94 Aligned_cols=50 Identities=4% Similarity=-0.097 Sum_probs=41.5
Q ss_pred ccccccccccccccccCceecCCC-CccchhhHHHHHHhhhccCCccceecCccccccccchH
Q 008943 114 SSTVMCDICMEEVAGDKATKMDCG-HCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~Cg-H~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~ 175 (548)
.+.+.|+||++.+ .+++.++|| |.||+.|+..||.. ...||. |+..+...
T Consensus 20 p~~~~CpI~~~~m--~dPV~~~cG~htf~r~cI~~~l~~--------~~~cP~--~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLM--CDPVVLPSSRVTVDRSTIARHLLS--------DQTDPF--NRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHTTT--------SCBCTT--TCSBCCTT
T ss_pred cHhcCCcCccccc--cCCeECCCCCeEECHHHHHHHHHh--------CCCCCC--CCCCCChh
Confidence 4579999999987 489999999 99999999999974 137998 77776643
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.81 E-value=6.6e-06 Score=69.54 Aligned_cols=49 Identities=6% Similarity=-0.020 Sum_probs=40.9
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccch
Q 008943 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~ 174 (548)
.+.+.|+||++.+ .+|+.++|||.||+.|+..||.. ...||. |+..+..
T Consensus 27 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLM--TDPVRLPSGTIMDRSIILRHLLN--------SPTDPF--NRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBC--SSEEEETTTEEEEHHHHHHHTTS--------CSBCSS--SCCBCCT
T ss_pred cHhhCCcCccCcc--cCCeECCCCCEEchHHHHHHHHc--------CCCCCC--CCCCCCh
Confidence 4579999999987 48999999999999999999974 147998 7776654
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.80 E-value=4.3e-06 Score=72.58 Aligned_cols=45 Identities=20% Similarity=0.570 Sum_probs=37.9
Q ss_pred cccccccccccccccCceec-CCCCccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 115 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
+.+.|+||++.+. +++.+ +|||.||..|+..++. ..||. |...+.
T Consensus 21 ~~~~C~IC~~~~~--~pv~~~~CgH~fC~~Ci~~~~~----------~~CP~--Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIG----------TGCPV--CYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCS--SCBCCCSSSCCBCTTTGGGGTT----------TBCSS--SCCBCS
T ss_pred hCCCCCCCChHhh--CccEeCCCCCHHHHHHHHHHhc----------CCCcC--CCCcCc
Confidence 4589999999874 67888 9999999999999975 47998 887664
No 49
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=1.6e-05 Score=62.91 Aligned_cols=50 Identities=24% Similarity=0.557 Sum_probs=38.5
Q ss_pred ccccccccccccccc-cCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 114 SSTVMCDICMEEVAG-DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~-~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
.....|+||++.+.. .....++|+|.||..|+..|+... ..||. |...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--------KVCPL--CNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--------SBCTT--TCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--------CcCCC--cCcccc
Confidence 345789999999754 334556999999999999999752 27998 887653
No 50
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.78 E-value=1.1e-05 Score=64.07 Aligned_cols=50 Identities=22% Similarity=0.512 Sum_probs=38.9
Q ss_pred cccccccccccccccc-CceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 114 SSTVMCDICMEEVAGD-KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
.+...|+||++.+... .+..++|||.||..|+..|+... ..||. |...+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~--------~~CP~--Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN--------RTCPI--CRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC--------SSCTT--TCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC--------CcCcC--cCCcCC
Confidence 3557899999997543 34667999999999999998652 37998 887654
No 51
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.77 E-value=1.4e-05 Score=66.04 Aligned_cols=50 Identities=24% Similarity=0.529 Sum_probs=38.9
Q ss_pred cccccccccccccccc-CceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 114 SSTVMCDICMEEVAGD-KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
.....|+||++.+... .+..++|||.||..|+..|+.. ...||. |...++
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--------~~~CP~--Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK--------SGTCPV--CRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT--------TCBCTT--TCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc--------CCcCcC--cCccCC
Confidence 3457899999997543 3566899999999999999863 137998 887664
No 52
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.75 E-value=1.7e-05 Score=68.18 Aligned_cols=52 Identities=25% Similarity=0.519 Sum_probs=37.8
Q ss_pred ccccccccccccc----------------CceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 117 VMCDICMEEVAGD----------------KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 117 ~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
..|+||++.+... ....++|+|.||..|+..|+...-.. ....||. |...+.
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~---~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD---GSLQCPS--CKTIYG 93 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCS---SCCBCTT--TCCBSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCC---CCCcCCC--CCCccC
Confidence 5899999997421 11256999999999999999542211 2468998 887664
No 53
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=4.8e-06 Score=65.17 Aligned_cols=46 Identities=26% Similarity=0.580 Sum_probs=36.9
Q ss_pred cccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
+...|+||++.+. + +.++|||.||..|+..|+.. ...||. |...+.
T Consensus 14 ~~~~C~IC~~~~~--~-~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 59 (70)
T 2ecn_A 14 DEEECCICMDGRA--D-LILPCAHSFCQKCIDKWSDR--------HRNCPI--CRLQMT 59 (70)
T ss_dssp CCCCCSSSCCSCC--S-EEETTTEEECHHHHHHSSCC--------CSSCHH--HHHCTT
T ss_pred CCCCCeeCCcCcc--C-cccCCCCcccHHHHHHHHHC--------cCcCCC--cCCccc
Confidence 4689999999975 3 77899999999999998762 357987 776554
No 54
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.72 E-value=1.3e-05 Score=73.82 Aligned_cols=49 Identities=29% Similarity=0.698 Sum_probs=39.3
Q ss_pred ccccccccccccccccCceec-CCCCccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 114 SSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
...+.|+||++.+. +++.+ +|||.||..|+..|+.. + ...||. |...+.
T Consensus 52 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLK--NTMTTKECLHRFCADCIITALRS----G---NKECPT--CRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHT----T---CCBCTT--TCCBCC
T ss_pred CCCCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHh----C---cCCCCC--CCCcCC
Confidence 35689999999975 56666 99999999999999873 1 357998 887663
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.67 E-value=1.6e-05 Score=78.90 Aligned_cols=51 Identities=12% Similarity=0.047 Sum_probs=41.5
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchH
Q 008943 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~ 175 (548)
...+.|+||++.+ .+|+.++|||+||+.|+..|+.. .+ ..||. |+..++..
T Consensus 206 ~~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~---~~----~~cP~--~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQR---VG----HFNPV--TRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHH---TC----SSCTT--TCCCCCGG
T ss_pred CcccCCcCcCCHh--cCCeECCCCCEECHHHHHHHHHH---CC----CCCcC--CCCCCchh
Confidence 3569999999997 48999999999999999999975 12 23998 88877643
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.53 E-value=2.5e-05 Score=61.98 Aligned_cols=43 Identities=26% Similarity=0.666 Sum_probs=35.0
Q ss_pred cccccccccccccccCceecCCCCc-cchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 115 STVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
+...|+||++.+ .+++.++|||. ||..|+..+ ..||. |...+.
T Consensus 23 ~~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRN--IAIVFVPCGHLVTCKQCAEAV------------DKCPM--CYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSB--CCEEEETTCCBCCCHHHHTTC------------SBCTT--TCCBCS
T ss_pred cCCCCCCCCCCC--CCEEEcCCCChhHHHHhhhcC------------ccCCC--cCcCcc
Confidence 457899999986 46788899999 999998765 47998 887654
No 57
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.51 E-value=4.5e-05 Score=71.09 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=41.6
Q ss_pred ccccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchH
Q 008943 114 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~ 175 (548)
.+.+.||||++.+ .+|+.++|||.||+.|+..|+... |. .||. |+..++..
T Consensus 104 p~~f~CPI~~elm--~DPV~~~~Ghtfer~~I~~~l~~~---~~----tcP~--t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRV---GH----FDPV--TRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT---CS----BCTT--TCCBCCGG
T ss_pred cHhhcccCccccC--CCCeECCCCCEECHHHHHHHHHhC---CC----CCCC--CcCCCChh
Confidence 3579999999987 489999999999999999999752 22 6998 77776543
No 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=5.5e-05 Score=60.12 Aligned_cols=43 Identities=26% Similarity=0.666 Sum_probs=34.1
Q ss_pred cccccccccccccccCceecCCCCc-cchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 115 STVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
+..+|+||++.+ .+++.++|||. ||..|+.. ...||. |...+.
T Consensus 24 ~~~~C~IC~~~~--~~~~~~pCgH~~~C~~C~~~------------~~~CP~--Cr~~i~ 67 (75)
T 2ecg_A 24 EEKLCKICMDRN--IAIVFVPCGHLVTCKQCAEA------------VDKCPM--CYTVIT 67 (75)
T ss_dssp HHHSCSSSCSSC--CCBCCSSSCCCCBCHHHHHH------------CSBCTT--TCCBCC
T ss_pred CCCCCCcCCCCC--CCEEEecCCCHHHHHHHhhC------------CCCCcc--CCceec
Confidence 457899999986 46788899999 99999853 147998 887654
No 59
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.30 E-value=7.3e-05 Score=61.22 Aligned_cols=48 Identities=25% Similarity=0.492 Sum_probs=38.8
Q ss_pred CcCCCCCCcceeecCCCCceEec-ccccccccccccccCCCCccccCCccCCCC
Q 008943 276 TKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGATGRDHTWSRIAGHSCGRY 328 (548)
Q Consensus 276 tK~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~~~~~H~w~~~~g~~C~~y 328 (548)
.+-||.|...+....+-..++|. |++.||+.|+.+|...| .|..|..|
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H-----~~~sC~~~ 73 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQH-----RGRSCEDF 73 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTT-----TTSCHHHH
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccccccCCchhhcC-----CCCChHHH
Confidence 35699999999888888889994 99999999999974444 45667644
No 60
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=0.00011 Score=59.26 Aligned_cols=48 Identities=27% Similarity=0.485 Sum_probs=34.3
Q ss_pred ccccccccccccc------------cCceec-CCCCccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 116 TVMCDICMEEVAG------------DKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 116 ~~~C~IC~e~~~~------------~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
..+|+||++.+.. +.+..+ +|||.||..|+..|+... -.||. |...+.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~--CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------NRCPL--CQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------CBCTT--TCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------CCCCC--cCCCcc
Confidence 4567777776632 224455 599999999999998752 27998 887654
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.15 E-value=0.00015 Score=55.77 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=37.0
Q ss_pred cccccccccccccccccCceec--CCCCc-cchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 113 LSSTVMCDICMEEVAGDKATKM--DCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
..+...|.||++... +++.+ +|||. ||..|...++.. .-.||. |...+.
T Consensus 5 ~~~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPK--NGCIVHGKTGHLMACFTCAKKLKKR--------NKPCPV--CRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCS--CEEEEETTEEEEEECHHHHHHHHHT--------TCCCTT--TCCCCC
T ss_pred CCCcCCCCcCCCCCC--CEEEECCCCCChhhHHHHHHHHHHc--------CCcCCC--cCcchh
Confidence 345678999999853 45555 99999 899999988753 137998 887653
No 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.11 E-value=0.00022 Score=74.04 Aligned_cols=47 Identities=26% Similarity=0.579 Sum_probs=38.1
Q ss_pred cccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccch
Q 008943 117 VMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (548)
Q Consensus 117 ~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~ 174 (548)
..|+||++.+ .+++.++|||.||..|+..++.. ....||. |...+..
T Consensus 333 ~~C~ICle~~--~~pv~lpCGH~FC~~Ci~~wl~~-------~~~~CP~--CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAEND--KDVKIEPCGHLMCTSCLTSWQES-------EGQGCPF--CRCEIKG 379 (389)
T ss_dssp SBCTTTSSSB--CCEEEETTCCEECHHHHHHHHHH-------TCSBCTT--TCCBCCE
T ss_pred CCCCccCcCC--CCeEEeCCCChhhHHHHHHHHhc-------CCCCCCC--CCCccCC
Confidence 6899999986 46788999999999999998873 1257998 8876543
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.11 E-value=0.00014 Score=58.59 Aligned_cols=43 Identities=28% Similarity=0.720 Sum_probs=34.5
Q ss_pred ccccccccccccccCceecCCCCc-cchhhHHHHHHhhhccCCccceecCccccccccch
Q 008943 116 TVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (548)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~ 174 (548)
...|+||++.. .+++.++|||. ||..|+..+ ..||. |...+..
T Consensus 18 ~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEE--INSTFCPCGHTVCCESCAAQL------------QSCPV--CRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSB--CCEEEETTCBCCBCHHHHTTC------------SBCTT--TCCBCCE
T ss_pred CCEeEEeCccc--CcEEEECCCCHHHHHHHHHhc------------CcCCC--CCchhhC
Confidence 46899999985 46788899999 999998754 27998 8876643
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.11 E-value=0.00043 Score=55.81 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=40.9
Q ss_pred ccccccccccccccccCceecCCC-----CccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 114 SSTVMCDICMEEVAGDKATKMDCG-----HCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~Cg-----H~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
.+...|.||++++...+...++|+ |.|+..|+..|+... + ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~---~~~Cpl--Cr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---D---TRCCEL--CKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---C---CSBCSS--SCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---C---CCCCCC--CCCeee
Confidence 345789999998865566678996 999999999999863 1 368999 887654
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.00 E-value=0.0005 Score=53.57 Aligned_cols=44 Identities=18% Similarity=0.561 Sum_probs=34.9
Q ss_pred ccccccccccccccccCceecCCCCc-cchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 114 SSTVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
.+...|.||++.. .+++.++|||. ||..|.... -.||. |...+.
T Consensus 13 ~~~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~~------------~~CP~--CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGT--VNWVLLPCRHTCLCDGCVKYF------------QQCPM--CRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSC--CCCEETTTTBCCSCTTHHHHC------------SSCTT--TCCCCC
T ss_pred CCCCCCCCcCcCC--CCEEEECCCChhhhHHHHhcC------------CCCCC--CCcchh
Confidence 3467899999975 46788899999 999999831 47998 887654
No 66
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.98 E-value=0.0002 Score=62.62 Aligned_cols=54 Identities=28% Similarity=0.638 Sum_probs=41.3
Q ss_pred cccccccccccccccc-----cCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccchHH
Q 008943 113 LSSTVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 176 (548)
Q Consensus 113 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~~ 176 (548)
......|+||++.+.. ...+.++|||.||..|+..|+... -.||. |...+....
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--------SBCTT--TCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--------CCCCC--CCCcCChhc
Confidence 3456889999998742 122677999999999999998751 37998 888776553
No 67
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.92 E-value=0.00035 Score=53.54 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=35.4
Q ss_pred cccccccccccccccCceec--CCCCc-cchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 115 STVMCDICMEEVAGDKATKM--DCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
....|.||++... ++..+ +|||. ||..|...++.. + -+||. |...+.
T Consensus 6 ~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~----~----~~CPi--CR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPR--DGNIIHGRTGHLVTCFHCARRLKKA----G----ASCPI--CKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBS--CEEEEETTEEEEEECHHHHHHHHHT----T----CBCTT--TCCBCC
T ss_pred cCCCCcccCCcCC--CeEEEecCCCCHhHHHHHHHHHHHh----C----CcCCC--cCchhh
Confidence 4578999999753 44444 99998 999999987653 1 37998 887653
No 68
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=96.91 E-value=0.00036 Score=56.29 Aligned_cols=37 Identities=32% Similarity=0.640 Sum_probs=34.0
Q ss_pred CcCCCC--CCcceeecCCCCceEe------ccccccccccccccc
Q 008943 276 TKPCPK--CHKPVEKNGGCNLVSC------ICGQAFCWLCGGATG 312 (548)
Q Consensus 276 tK~CPk--C~~~IEKn~GCnhMtC------~C~~~FCw~C~~~~~ 312 (548)
.+-||. |+..|....+...++| .||+.||+.|+..||
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 588998 9999998889999999 699999999999974
No 69
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.79 E-value=0.00059 Score=58.05 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=36.1
Q ss_pred ccccccccccccccc----------------CceecCCCCccchhhHHHHHHhhhccCCccceecCcccccccc
Q 008943 115 STVMCDICMEEVAGD----------------KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i 172 (548)
...+|+||++.+... ....++|+|.|+..|+..|+.. ...||. |...+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--------CSBCSS--SCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--------CCcCcC--CCCcc
Confidence 346799999887532 1345699999999999999875 247998 87764
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.37 E-value=0.00093 Score=68.68 Aligned_cols=43 Identities=26% Similarity=0.732 Sum_probs=35.2
Q ss_pred cccccccccccccccCceecCCCCc-cchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 115 STVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
+...|+||++.+ .+++.++|||. ||..|+..+ ..||. |...+.
T Consensus 294 ~~~~C~IC~~~~--~~~v~lpCgH~~fC~~C~~~~------------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKE--VSVVFIPCGHLVVCQECAPSL------------RKCPI--CRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSB--CCEEEETTCCEEECTTTGGGC------------SBCTT--TCCBCC
T ss_pred CCCCCCccCCcC--CceEEcCCCChhHhHHHHhcC------------CcCCC--CCCCcc
Confidence 457899999986 47888899999 999998754 47998 887654
No 71
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.99 E-value=0.0011 Score=57.29 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=0.4
Q ss_pred cccccccccccccc----------------CceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 116 TVMCDICMEEVAGD----------------KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 116 ~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
.-.|.||++.+... .+..++|+|.|+..|+..|+... -.||. |...+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--------~~CP~--Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPL--DNREWE 111 (117)
T ss_dssp C-------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--------CcCCC--CCCeee
Confidence 36899999997521 11224899999999999998761 36998 877543
No 72
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.97 E-value=0.0037 Score=63.38 Aligned_cols=60 Identities=17% Similarity=0.362 Sum_probs=42.8
Q ss_pred ccccccccccccccc-cCce-----ecCCCCccchhhHHHHHHhhhccCCccce---ecCccccccccchH
Q 008943 114 SSTVMCDICMEEVAG-DKAT-----KMDCGHCFCNDCWTEHFIVKINEGQSKRI---RCMAHKCNAICDEA 175 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~-~~~~-----~l~CgH~fC~~C~~~yl~~~i~~g~~~~i---~CP~~~C~~~i~~~ 175 (548)
....+|+||++.+.. .... ...|+|.|...|+..|+.+.-...+++.+ .||. |...++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCcc
Confidence 356789999998653 2221 24799999999999999886554443332 7997 99877644
No 73
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.57 E-value=0.016 Score=45.81 Aligned_cols=50 Identities=22% Similarity=0.479 Sum_probs=37.1
Q ss_pred cccccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 115 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
....|.||.+.+.... .-..|+|.|...|+..||.++- .-.||. |+..++
T Consensus 14 ~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~~------~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNA------EPRCPH--CNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTCS------SCCCTT--TCSCCC
T ss_pred CCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhcC------CCCCCC--CcCcCC
Confidence 3468999999975332 2238999999999999997531 147998 887654
No 74
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=94.30 E-value=0.017 Score=43.79 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=36.2
Q ss_pred ccccccccccccccCceec-CCCCccchhhHHHHHHhhhccCCccceecCccccccccch
Q 008943 116 TVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 174 (548)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~ 174 (548)
.+.|+||++.+. +++.+ ++||.|++.|+..|+.. +| +||. .+..+..
T Consensus 3 ~~~CpIs~~~m~--dPV~~~~sG~~yer~~I~~~l~~---~~-----~cP~--t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKD---TG-----NDPI--TNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCS--SEEEETTTTEEEEHHHHHHHHHH---HS-----BCTT--TCCBCCG
T ss_pred eEEecCCCCCCC--CCEEeCCCCcEEcHHHHHHHHHh---CC-----CCcC--CcCCCCh
Confidence 478999999874 77888 99999999999999975 22 3887 4454443
No 75
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=94.10 E-value=0.12 Score=36.37 Aligned_cols=40 Identities=28% Similarity=0.475 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008943 51 QKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (548)
Q Consensus 51 ~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (548)
+++.|..-+++.|.++..|+.+|..++||.+.-+..|++.
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~ 44 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYED 44 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 5667889999999999999999999999999999999963
No 76
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.55 E-value=0.29 Score=37.05 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008943 49 AAQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (548)
Q Consensus 49 ~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (548)
..|++.|..-+.+.+.++..|+.+|..++||.+.-+..|++.
T Consensus 13 ~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~ 54 (62)
T 2dal_A 13 SALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDG 54 (62)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 346778999999999999999999999999999999999964
No 77
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.09 E-value=0.053 Score=44.98 Aligned_cols=32 Identities=28% Similarity=0.841 Sum_probs=24.6
Q ss_pred ccccccccccccccCcee--cCCCCccchhhHHHH
Q 008943 116 TVMCDICMEEVAGDKATK--MDCGHCFCNDCWTEH 148 (548)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~--l~CgH~fC~~C~~~y 148 (548)
...|+||.+.+.. +++. +.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~-~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQ-DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCC-BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCC-CceEECCcCChHHhHHHCHHH
Confidence 4789999976322 3333 899999999999983
No 78
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=91.63 E-value=0.093 Score=43.50 Aligned_cols=45 Identities=27% Similarity=0.521 Sum_probs=29.0
Q ss_pred ccccccccccccCceecCCCCccchhhHHHHHHhhhccCCccceecCcccccccc
Q 008943 118 MCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (548)
Q Consensus 118 ~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i 172 (548)
-|++|--++. .-...++|.|.||.+|...+..... =.||. |...+
T Consensus 3 fC~~C~~Pi~-iygRmIPCkHvFCydCa~~~~~~~~-------k~Cp~--C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIK-VYGRMIPCKHVFCYDCAILHEKKGD-------KMCPG--CSDPV 47 (101)
T ss_dssp BCTTTCSBCS-EEEEEETTCCEEEHHHHHHHHHTTC-------CBCTT--TCCBC
T ss_pred ecCccCCCeE-EEeeeccccccHHHHHHHHHHhccC-------CCCcC--cCCee
Confidence 4778855542 1223459999999999999876422 24666 66544
No 79
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.35 E-value=0.07 Score=40.25 Aligned_cols=37 Identities=32% Similarity=0.768 Sum_probs=29.5
Q ss_pred ccccCCCCCCCCceEEeccCceeeeecc---CCCccccCcCccC
Q 008943 206 MVKWCPSTPHCGNAIRVEEVEVCEVECA---CGAQFCFSCLSEA 246 (548)
Q Consensus 206 ~~~~CP~~p~C~~~i~~~~~~~~~v~C~---Cg~~fC~~C~~~~ 246 (548)
+.+.|| .|+..|...+ .-..++|. |++.||+.|+.+|
T Consensus 5 ~~k~CP---~C~~~Iek~~-GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECP---KCHVTIEKDG-GCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCT---TTCCCCSSCC-SCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECc---CCCCeeEeCC-CCCcEEECCCCcCCEEeeCcCCCc
Confidence 457898 7999887544 44568996 9999999999876
No 80
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.23 E-value=0.03 Score=46.51 Aligned_cols=75 Identities=23% Similarity=0.422 Sum_probs=46.9
Q ss_pred eeeecc-CCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCC-CcceeecCCCCceEe-ccccccc
Q 008943 228 CEVECA-CGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKC-HKPVEKNGGCNLVSC-ICGQAFC 304 (548)
Q Consensus 228 ~~v~C~-Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC-~~~IEKn~GCnhMtC-~C~~~FC 304 (548)
+...|. |++.||..|...+|....-...+.......+. ......|+.+ +.+++ ++| .|+...|
T Consensus 17 av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~-------~~~~~~C~~H~~e~l~-------~fC~~~~~~iC 82 (101)
T 2jun_A 17 AVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDS-------HIRGLMCLEHEDEKVN-------MYCVTDDQLIC 82 (101)
T ss_dssp CCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSC-------CSSCCCCSSCSSSCCC-------EEETTTTEEEC
T ss_pred ceEECCcCChHHhHHHCHHHhccCCccCCCeeecccccc-------CccCCcCcCcCCCcce-------EECCCCCCccc
Confidence 457896 99999999998777632211111111111000 1123579999 57888 999 5999999
Q ss_pred ccccc-cccCCCC
Q 008943 305 WLCGG-ATGRDHT 316 (548)
Q Consensus 305 w~C~~-~~~~~H~ 316 (548)
+.|.. .-+.+|.
T Consensus 83 ~~C~~~~~H~~H~ 95 (101)
T 2jun_A 83 ALCKLVGRHRDHQ 95 (101)
T ss_dssp HHHHHHTTTSSSC
T ss_pred hhcCCCCCcCCCC
Confidence 99985 4444443
No 81
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=90.11 E-value=0.57 Score=39.11 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=41.9
Q ss_pred CHHHHHHHH----------HHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008943 43 TRESLLAAQ----------KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (548)
Q Consensus 43 t~~~l~~~~----------~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (548)
|.++|+-++ +++|..|+++.|++.+.|+..|...+|+++..++.+++.
T Consensus 21 TaeQ~rLAq~i~~~~d~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 21 TAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp SHHHHHHHHHHHHSCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhcCCcccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 666665443 679999999999999999999999999999999999964
No 82
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=89.87 E-value=0.27 Score=36.92 Aligned_cols=49 Identities=20% Similarity=0.534 Sum_probs=35.2
Q ss_pred cccccccccccccccCceecCCC--C---ccchhhHHHHHHhhhccCCccceecCccccccccc
Q 008943 115 STVMCDICMEEVAGDKATKMDCG--H---CFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 173 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~Cg--H---~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~ 173 (548)
+...|.||+++.. +...+||. | .|...|+..|+..+- ...||. |+..+.
T Consensus 5 ~~~~CrIC~~~~~--~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~------~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--NERFRACGCTGELENVHRSCLSTWLTISR------NTACQI--CGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--CCCCCSCCCSSGGGSCCHHHHHHHHHHHT------CSBCTT--TCCBCC
T ss_pred CCCEeEEeecCCC--CceecCcCCCCchhhhHHHHHHHHHHhCC------CCccCC--CCCeee
Confidence 4568999999743 33346755 4 899999999997632 268998 877553
No 83
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.79 E-value=0.36 Score=38.03 Aligned_cols=67 Identities=22% Similarity=0.457 Sum_probs=45.9
Q ss_pred cccccccccccccccccCceecC--CCCccchhhHHHHHHhhhccCCccceecCcc-ccccc-------cchHHHHHhhc
Q 008943 113 LSSTVMCDICMEEVAGDKATKMD--CGHCFCNDCWTEHFIVKINEGQSKRIRCMAH-KCNAI-------CDEAVVRNLVS 182 (548)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~-~C~~~-------i~~~~i~~ll~ 182 (548)
....+.|.+|-+.+....++..+ =.|.||..|-+.+|+.+-..+ .+.||.. +|... +-...|..+|.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~---EvyCPSG~kCpL~gS~~PWAFmqgEIatILg 88 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATG---EVYCPSGEKCPLVGSNVPWAFMQGEIATILS 88 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSS---CCCCTTSSCCBCSSSSSBCCCCHHHHHHHHS
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCC---cEECCCCCccccCCCcCchHHHhhHHHHHhc
Confidence 45678999999988655555543 269999999999999876544 4778863 55531 23345556654
No 84
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.53 E-value=0.81 Score=35.14 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008943 50 AQKEDLRRVMELLS-LREHHARTLLIHYRWDVEKLLAVLVEN 90 (548)
Q Consensus 50 ~~~~~i~~v~~~l~-i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (548)
.+++.|..-+.+.| -.+..|+.+|..++||.+.-+..|++.
T Consensus 17 ~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 17 EQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 35667999999999 888999999999999999999999963
No 85
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=89.39 E-value=0.93 Score=35.14 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008943 50 AQKEDLRRVMELL-SLREHHARTLLIHYRWDVEKLLAVLVEN 90 (548)
Q Consensus 50 ~~~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (548)
.+...|..|.++| .+..+.+..+|.+|+-|+|.+++.+++.
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 4668899999999 7999999999999999999999999973
No 86
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=87.37 E-value=0.98 Score=30.46 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHH
Q 008943 52 KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVL 87 (548)
Q Consensus 52 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~ 87 (548)
.+.|.+++++ |++.+.|+..|+..+||++.-++.+
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4578889987 9999999999999999999877654
No 87
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.74 E-value=0.21 Score=37.59 Aligned_cols=33 Identities=30% Similarity=0.791 Sum_probs=23.5
Q ss_pred ccCCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCcceeec
Q 008943 232 CACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKN 289 (548)
Q Consensus 232 C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEKn 289 (548)
=+||+.||..|... | +..+...||.|+.++.++
T Consensus 24 ~~CgH~fC~~Ci~~------------~-------------~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 24 NVCGHTLCESCVDL------------L-------------FVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCCEEHHHHHH------------H-------------HHTTSSSCTTTCCCCSSC
T ss_pred CCCCCHhHHHHHHH------------H-------------HHcCCCcCCCCCCccccc
Confidence 36999999999642 2 112236899999998754
No 88
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=85.88 E-value=0.35 Score=40.08 Aligned_cols=48 Identities=31% Similarity=0.768 Sum_probs=33.0
Q ss_pred cCCCCCCCCceEEeccCceeeeec-cCCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCccee
Q 008943 209 WCPSTPHCGNAIRVEEVEVCEVEC-ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (548)
Q Consensus 209 ~CP~~p~C~~~i~~~~~~~~~v~C-~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IE 287 (548)
.|| .|+..|..-+ .- ||++.||..|-.. |.....+.||.|+.+|.
T Consensus 3 fC~---~C~~Pi~iyg------RmIPCkHvFCydCa~~-------------------------~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCD---KCGLPIKVYG------RMIPCKHVFCYDCAIL-------------------------HEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCT---TTCSBCSEEE------EEETTCCEEEHHHHHH-------------------------HHHTTCCBCTTTCCBCS
T ss_pred ecC---ccCCCeEEEe------eeccccccHHHHHHHH-------------------------HHhccCCCCcCcCCeee
Confidence 576 6877665332 22 6999999999542 22234589999999998
Q ss_pred ecC
Q 008943 288 KNG 290 (548)
Q Consensus 288 Kn~ 290 (548)
+.+
T Consensus 49 rVe 51 (101)
T 3vk6_A 49 RIE 51 (101)
T ss_dssp EEE
T ss_pred eeE
Confidence 643
No 89
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=84.53 E-value=0.37 Score=39.82 Aligned_cols=45 Identities=33% Similarity=0.922 Sum_probs=30.2
Q ss_pred cCCCCCCCCceEEeccCceeeeecc-CCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCccee
Q 008943 209 WCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (548)
Q Consensus 209 ~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IE 287 (548)
.|| -|...+. ..+.|. ||+.||..|... |. ......||.|+.++.
T Consensus 24 ~C~---IC~~~~~------~p~~~~~CgH~FC~~Ci~~------------~~-------------~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 24 RCF---ICMEKLR------DARLCPHCSKLCCFSCIRR------------WL-------------TEQRAQCPHCRAPLQ 69 (100)
T ss_dssp BCT---TTCSBCS------SEEECTTTCCEEEHHHHHH------------HH-------------HHTCSBCTTTCCBCC
T ss_pred CCc---cCCcccc------CccccCCCCChhhHHHHHH------------HH-------------HHCcCCCCCCCCcCC
Confidence 687 6865543 135664 999999999653 22 222258999998875
No 90
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=83.56 E-value=0.88 Score=32.07 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHcCCChHHHHHHHH
Q 008943 51 QKEDLRRVMELLSLRE-HHARTLLIHYRWDVEKLLAVLV 88 (548)
Q Consensus 51 ~~~~i~~v~~~l~i~~-~~a~~LL~~~~W~~~~l~~~~~ 88 (548)
..+.|..-.++.|++. ..|+..|-.++||.+.-+..|+
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 3456778889999996 9999999999999988766554
No 91
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.13 E-value=2.2 Score=32.59 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
+.|..-+.+.|.++..|+..|...+||.+.-++.|++
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4688888999999999999999999999999999996
No 92
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=82.87 E-value=0.31 Score=42.79 Aligned_cols=44 Identities=30% Similarity=0.671 Sum_probs=29.5
Q ss_pred cCCCCCCCCceEEeccCceeeeeccCCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCccee
Q 008943 209 WCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (548)
Q Consensus 209 ~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IE 287 (548)
.|| -|...+. ..+.-+||+.||..|...| .. ....||.|+.+|.
T Consensus 55 ~C~---iC~~~~~------~~~~~~CgH~fc~~Ci~~~------------~~--------------~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 55 QCI---ICSEYFI------EAVTLNCAHSFCSYCINEW------------MK--------------RKIECPICRKDIK 98 (138)
T ss_dssp BCT---TTCSBCS------SEEEETTSCEEEHHHHHHH------------TT--------------TCSBCTTTCCBCC
T ss_pred CCc---ccCcccC------CceECCCCCCccHHHHHHH------------HH--------------cCCcCCCCCCcCC
Confidence 588 5865442 1245589999999996432 21 1257999999886
No 93
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=82.82 E-value=0.29 Score=38.79 Aligned_cols=51 Identities=27% Similarity=0.728 Sum_probs=31.5
Q ss_pred ccCCCCCCCCceEEeccCceeeeeccCCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCccee
Q 008943 208 KWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (548)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IE 287 (548)
..|| -|-..+...+ .....|+||+.||..|...+ |. .....||.|+.++.
T Consensus 12 ~~Cp---ICle~~~~~d--~~~~p~~CGH~fC~~Cl~~~-----------~~--------------~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 12 VECP---LCMEPLEIDD--INFFPCTCGYQICRFCWHRI-----------RT--------------DENGLCPACRKPYP 61 (78)
T ss_dssp CBCT---TTCCBCCTTT--TTCCSSTTSCCCCHHHHHHH-----------TT--------------SSCSBCTTTCCBCS
T ss_pred CcCC---ccCccCcccc--ccccccCCCCCcCHHHHHHH-----------Hh--------------cCCCCCCCCCCccC
Confidence 4687 5765432222 12244789999999996431 10 01268999999886
Q ss_pred e
Q 008943 288 K 288 (548)
Q Consensus 288 K 288 (548)
+
T Consensus 62 ~ 62 (78)
T 1e4u_A 62 E 62 (78)
T ss_dssp S
T ss_pred C
Confidence 3
No 94
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.92 E-value=0.54 Score=35.37 Aligned_cols=49 Identities=22% Similarity=0.635 Sum_probs=31.4
Q ss_pred cccCCCCCCCCceEEeccCceeeeeccCCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCcce
Q 008943 207 VKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPV 286 (548)
Q Consensus 207 ~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~I 286 (548)
...|| -|...+.. + +.-+||+.||..|... | +......||.|+.+|
T Consensus 15 ~~~C~---IC~~~~~~-----p-~~~~CgH~fC~~Ci~~------------~-------------~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 15 KYKCE---KCHLVLCS-----P-KQTECGHRFCESCMAA------------L-------------LSSSSPKCTACQESI 60 (66)
T ss_dssp CEECT---TTCCEESS-----C-CCCSSSCCCCHHHHHH------------H-------------HTTSSCCCTTTCCCC
T ss_pred CCCCC---CCChHhcC-----e-eECCCCCHHHHHHHHH------------H-------------HHhCcCCCCCCCcCC
Confidence 34687 58655431 1 2236999999998653 2 212336899999998
Q ss_pred eec
Q 008943 287 EKN 289 (548)
Q Consensus 287 EKn 289 (548)
..+
T Consensus 61 ~~~ 63 (66)
T 2ecy_A 61 VKD 63 (66)
T ss_dssp CTT
T ss_pred Chh
Confidence 753
No 95
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=81.63 E-value=0.54 Score=42.48 Aligned_cols=45 Identities=27% Similarity=0.735 Sum_probs=30.2
Q ss_pred cCCCCCCCCceEEeccCceeeeec-cCCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCccee
Q 008943 209 WCPSTPHCGNAIRVEEVEVCEVEC-ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (548)
Q Consensus 209 ~CP~~p~C~~~i~~~~~~~~~v~C-~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IE 287 (548)
.|| -|...+. . .+.. +||+.||..|... |+......||.|+.++.
T Consensus 56 ~C~---IC~~~~~-----~-p~~~~~CgH~fC~~Ci~~-------------------------~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 56 MCP---ICLDMLK-----N-TMTTKECLHRFCADCIIT-------------------------ALRSGNKECPTCRKKLV 101 (165)
T ss_dssp BCT---TTSSBCS-----S-EEEETTTCCEEEHHHHHH-------------------------HHHTTCCBCTTTCCBCC
T ss_pred CCc---ccChHhh-----C-cCEeCCCCChhHHHHHHH-------------------------HHHhCcCCCCCCCCcCC
Confidence 687 5865443 1 2555 7999999999642 22223468999998875
No 96
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=81.55 E-value=0.47 Score=36.93 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=30.0
Q ss_pred ccCCCCCCCCceEEeccCceeeeeccCCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCccee
Q 008943 208 KWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (548)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IE 287 (548)
..|| -|...+. .+ +.-+||+.||..|... |+..+...||.|+.++.
T Consensus 9 ~~C~---IC~~~~~-----~P-v~~~CgH~fc~~Ci~~-------------------------~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 9 FRCP---ISLELMK-----DP-VIVSTGQTYERSSIQK-------------------------WLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSCT---TTSCCCS-----SE-EEETTTEEEEHHHHHH-------------------------HHTTTCCBCTTTCCBCS
T ss_pred CCCC---Ccccccc-----CC-EEcCCCCeecHHHHHH-------------------------HHHHCcCCCCCCcCCCC
Confidence 3687 5765543 11 4447999999998643 22222478999998875
No 97
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=81.27 E-value=0.57 Score=40.12 Aligned_cols=46 Identities=20% Similarity=0.556 Sum_probs=30.4
Q ss_pred ccCCCCCCCCceEEeccCceeeeeccCCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCccee
Q 008943 208 KWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (548)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IE 287 (548)
..|| -|...+. . .++-+||+.||..|...| +..+...||.|+.++.
T Consensus 53 ~~C~---IC~~~~~-----~-p~~~~CgH~fC~~Ci~~~-------------------------~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 53 FQCI---CCQELVF-----R-PITTVCQHNVCKDCLDRS-------------------------FRAQVFSCPACRYDLG 98 (124)
T ss_dssp TBCT---TTSSBCS-----S-EEECTTSCEEEHHHHHHH-------------------------HHTTCCBCTTTCCBCC
T ss_pred CCCC---cCChHHc-----C-cEEeeCCCcccHHHHHHH-------------------------HhHCcCCCCCCCccCC
Confidence 3687 6865443 1 134489999999996532 2223358999999886
No 98
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=80.99 E-value=0.89 Score=36.20 Aligned_cols=33 Identities=36% Similarity=0.917 Sum_probs=22.3
Q ss_pred cCCCCCCcceeecCCCCceEe-cccc-----cccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSC-ICGQ-----AFCWLCGGAT 311 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC-~C~~-----~FCw~C~~~~ 311 (548)
..||.|+.+|+.++| +..| .|+. .||-.|+.+.
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCC
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHH
Confidence 468888888887777 4557 4763 3677777663
No 99
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.80 E-value=0.63 Score=35.95 Aligned_cols=33 Identities=24% Similarity=0.831 Sum_probs=24.5
Q ss_pred cCCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCcceeecCC
Q 008943 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGG 291 (548)
Q Consensus 233 ~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEKn~G 291 (548)
+|++.||..|... |. ..+ ..||-|+..|....|
T Consensus 43 ~C~H~fh~~Ci~~------------w~-------------~~~-~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 43 PCNHEFHAKCVDK------------WL-------------KAN-RTCPICRADSGPSSG 75 (75)
T ss_dssp TTTEEEETTHHHH------------HH-------------HHC-SSCTTTCCCCCCCCC
T ss_pred CCCCHhHHHHHHH------------HH-------------HcC-CcCcCcCCcCCCCCC
Confidence 6999999998653 32 222 589999999987665
No 100
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=77.92 E-value=4.8 Score=28.64 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 52 KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 52 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
.+.|++++++ |.+.+.|+.-|+...||+++..+.++.
T Consensus 9 ~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4566777765 899999999999999999999988874
No 101
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=75.85 E-value=1.7 Score=36.79 Aligned_cols=31 Identities=29% Similarity=0.665 Sum_probs=20.3
Q ss_pred ccCCCCCCCCceEEeccCceeeeeccCCCccccCcCccC
Q 008943 208 KWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEA 246 (548)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~ 246 (548)
..|| -|...+. .+.+..+||+.||..|...|
T Consensus 23 ~~C~---IC~~~~~-----~pv~~~~CgH~fC~~Ci~~~ 53 (117)
T 1jm7_B 23 LRCS---RCTNILR-----EPVCLGGCEHIFCSNCVSDC 53 (117)
T ss_dssp TSCS---SSCSCCS-----SCBCCCSSSCCBCTTTGGGG
T ss_pred CCCC---CCChHhh-----CccEeCCCCCHHHHHHHHHH
Confidence 3687 5865543 12223379999999998654
No 102
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=75.40 E-value=1.8 Score=31.40 Aligned_cols=27 Identities=30% Similarity=0.784 Sum_probs=21.6
Q ss_pred cCCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCcceee
Q 008943 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (548)
Q Consensus 233 ~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEK 288 (548)
+||+.||..|...+ ...||.|+..+..
T Consensus 23 ~CgH~fC~~Ci~~~-----------------------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 23 PCLHTLCSGCLEAS-----------------------------GMQCPICQAPWPL 49 (56)
T ss_dssp TTSCCSBTTTCSSS-----------------------------SSSCSSCCSSSSC
T ss_pred CCCCcccHHHHccC-----------------------------CCCCCcCCcEeec
Confidence 59999999997641 2689999998864
No 103
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=75.19 E-value=1.3 Score=42.85 Aligned_cols=50 Identities=22% Similarity=0.484 Sum_probs=37.2
Q ss_pred ccccccccccccccCceec-CCCCccchhhHHHHHHhhhccCCccceecCccccccccchH
Q 008943 116 TVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (548)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~ 175 (548)
...|.||.+.+... ... .|+|.|...|+..|+... ....||. |+..++..
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~------~~~~CP~--C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSN------AEPRCPH--CNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTC------SSCBCTT--TCCBCCSC
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhC------CCCCCCC--CCCCCCCC
Confidence 56899999987532 223 599999999999999752 2358997 88876543
No 104
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=74.91 E-value=0.96 Score=38.38 Aligned_cols=30 Identities=37% Similarity=0.838 Sum_probs=20.1
Q ss_pred cccCCCCCCCCceEEeccCceeeeeccCCCccccCcCcc
Q 008943 207 VKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSE 245 (548)
Q Consensus 207 ~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~ 245 (548)
...|| -|...+.. .+..+||+.||..|...
T Consensus 18 ~~~C~---IC~~~~~~------p~~~~CgH~fC~~Ci~~ 47 (118)
T 3hct_A 18 KYECP---ICLMALRE------AVQTPCGHRFCKACIIK 47 (118)
T ss_dssp GGBCT---TTCSBCSS------EEECTTSCEEEHHHHHH
T ss_pred CCCCC---cCChhhcC------eEECCcCChhhHHHHHH
Confidence 34687 68655431 14558999999999653
No 105
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=74.84 E-value=1.6 Score=33.10 Aligned_cols=34 Identities=29% Similarity=0.667 Sum_probs=26.6
Q ss_pred ccccccccccccccccCceecCC-CCccchhhHHHHHH
Q 008943 114 SSTVMCDICMEEVAGDKATKMDC-GHCFCNDCWTEHFI 150 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~C~~~yl~ 150 (548)
.+..-|.||.++- .+.-+.| |-.||..||++.-.
T Consensus 6 ee~pWC~ICneDA---tlrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 6 SGLPWCCICNEDA---TLRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCSSCTTTCSCC---CEEETTTTSEEECSSHHHHHTT
T ss_pred cCCCeeEEeCCCC---eEEecCCCCceehHHHHHHHcc
Confidence 3456899999983 3556789 78999999999763
No 106
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=74.70 E-value=1.8 Score=30.83 Aligned_cols=29 Identities=24% Similarity=0.614 Sum_probs=21.4
Q ss_pred CCcCCCCCCc-ceeecCCCCceEe-cccccc
Q 008943 275 HTKPCPKCHK-PVEKNGGCNLVSC-ICGQAF 303 (548)
Q Consensus 275 ~tK~CPkC~~-~IEKn~GCnhMtC-~C~~~F 303 (548)
+...||.|+. .|.-+..=..+.| .||..|
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 3468999998 7876665566888 487755
No 107
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=74.54 E-value=1.2 Score=31.81 Aligned_cols=29 Identities=24% Similarity=0.615 Sum_probs=21.0
Q ss_pred cCCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCccee
Q 008943 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (548)
Q Consensus 233 ~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IE 287 (548)
+||+.||..|.. +| +..+ ..||.|+.+|.
T Consensus 26 ~CgH~fc~~Ci~------------~~-------------~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 26 PCGHLLHRTCYE------------EM-------------LKEG-YRCPLCSGPSS 54 (55)
T ss_dssp TTSCEEETTHHH------------HH-------------HHHT-CCCTTSCCSSC
T ss_pred CCCCcccHHHHH------------HH-------------HHcC-CcCCCCCCcCC
Confidence 599999999864 23 2222 68999998764
No 108
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.30 E-value=0.84 Score=33.86 Aligned_cols=31 Identities=35% Similarity=0.763 Sum_probs=24.7
Q ss_pred cCCCCCCcceeecCCCCceEeccccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 312 (548)
-.||-|...+.. -++-.|||.||+.|+..|-
T Consensus 21 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 21 VICPICLDILQK-----PVTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CBCTTTCSBCSS-----CEECTTSSEECHHHHHHHH
T ss_pred CCCCcCCchhCC-----eEEeCCCCcchHHHHHHHH
Confidence 589999887763 3455899999999999863
No 109
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=73.95 E-value=1.9 Score=35.36 Aligned_cols=33 Identities=30% Similarity=0.874 Sum_probs=27.6
Q ss_pred cCCCCCCcceeecCCCCceEe-cccc-----cccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSC-ICGQ-----AFCWLCGGAT 311 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC-~C~~-----~FCw~C~~~~ 311 (548)
..||.|+.+++.++| +.+| .|+. .||-.|+++.
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBC
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHH
Confidence 699999999999988 6779 5885 4799998774
No 110
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=73.92 E-value=1.3 Score=32.56 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=19.6
Q ss_pred CCcCCCCCCcceeecCCCCceEe-cccccc
Q 008943 275 HTKPCPKCHKPVEKNGGCNLVSC-ICGQAF 303 (548)
Q Consensus 275 ~tK~CPkC~~~IEKn~GCnhMtC-~C~~~F 303 (548)
..+.||+|+..+--...-+.++| +|++.+
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 35899999974432223368899 698864
No 111
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=73.58 E-value=5.8 Score=27.18 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 52 KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 52 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
.+.|.++++ +|++.+.|+.-|+..+||++.-.+.++.
T Consensus 5 e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 356777777 5999999999999999999998887763
No 112
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=73.56 E-value=1.3 Score=39.53 Aligned_cols=46 Identities=22% Similarity=0.547 Sum_probs=30.0
Q ss_pred ccCCCCCCCCceEEeccCceeeeeccCCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCccee
Q 008943 208 KWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 287 (548)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IE 287 (548)
..|| -|...+. . .+.-+||+.||..|... |+......||.|+.++.
T Consensus 79 ~~C~---IC~~~~~-----~-pv~~~CgH~fC~~Ci~~-------------------------~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 79 FMCV---CCQELVY-----Q-PVTTECFHNVCKDCLQR-------------------------SFKAQVFSCPACRHDLG 124 (150)
T ss_dssp TBCT---TTSSBCS-----S-EEECTTSCEEEHHHHHH-------------------------HHHTTCCBCTTTCCBCC
T ss_pred CEee---cCChhhc-----C-CEEcCCCCchhHHHHHH-------------------------HHHhCCCcCCCCCccCC
Confidence 3687 5865443 1 13447999999999642 22223358999998876
No 113
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=72.45 E-value=1.1 Score=40.47 Aligned_cols=32 Identities=34% Similarity=0.782 Sum_probs=22.4
Q ss_pred ccccCCCCCCCCceEEeccCceeeeeccCCCccccCcCccC
Q 008943 206 MVKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEA 246 (548)
Q Consensus 206 ~~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~ 246 (548)
....|| -|...+.. -+.++||+.||..|...|
T Consensus 17 ~~~~C~---IC~~~~~~------pv~~~CgH~fC~~Ci~~~ 48 (170)
T 3hcs_A 17 SKYECP---ICLMALRE------AVQTPCGHRFCKACIIKS 48 (170)
T ss_dssp GGGBCT---TTCSBCSS------EEECTTSCEEEHHHHHHH
T ss_pred CCCCCC---CCChhhcC------cEECCCCCHHHHHHHHHH
Confidence 334787 68665431 256789999999998654
No 114
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=71.16 E-value=1.5 Score=35.09 Aligned_cols=36 Identities=25% Similarity=0.655 Sum_probs=29.0
Q ss_pred CCcCCCCCCcceeecCCCCceEec-ccccccccccccccC
Q 008943 275 HTKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGATGR 313 (548)
Q Consensus 275 ~tK~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~~~~ 313 (548)
..-.||.|+....+..+=..+.|. |++.|- |+.|.+
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a---ggay~~ 62 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFT---GGSYKP 62 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEE---CCSSSS
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEec---CCEecc
Confidence 346999999999998888899994 999874 566543
No 115
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=70.78 E-value=1.6 Score=36.68 Aligned_cols=27 Identities=30% Similarity=0.704 Sum_probs=18.5
Q ss_pred cCCCCCCCCceEEeccCceeeeeccCCCccccCcCc
Q 008943 209 WCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLS 244 (548)
Q Consensus 209 ~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~ 244 (548)
.|| -|...+. . .+.-+||+.||..|..
T Consensus 25 ~C~---IC~~~~~-----~-p~~~~CgH~fC~~Ci~ 51 (116)
T 1rmd_A 25 SCQ---ICEHILA-----D-PVETSCKHLFCRICIL 51 (116)
T ss_dssp BCT---TTCSBCS-----S-EEECTTSCEEEHHHHH
T ss_pred CCC---CCCcHhc-----C-cEEcCCCCcccHHHHH
Confidence 687 5865543 1 1345799999999965
No 116
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.55 E-value=1.1 Score=34.09 Aligned_cols=32 Identities=34% Similarity=0.744 Sum_probs=24.9
Q ss_pred cCCCCCCcceeecCCCCceEecccccccccccccccC
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGR 313 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~~ 313 (548)
..||-|...+.. -++-.|||.||+.|+..|-.
T Consensus 21 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 21 VICPICLDILQK-----PVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CBCTTTCSBCSS-----EEECTTCCEEEHHHHHHHCS
T ss_pred CEeccCCcccCC-----eEEcCCCChhhHHHHHHHHH
Confidence 589999987762 34448999999999988643
No 117
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=70.54 E-value=2 Score=32.57 Aligned_cols=27 Identities=37% Similarity=0.874 Sum_probs=22.6
Q ss_pred CcCCCCCCcceeecCCCCceEeccccccccc
Q 008943 276 TKPCPKCHKPVEKNGGCNLVSCICGQAFCWL 306 (548)
Q Consensus 276 tK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~ 306 (548)
..+|..|++.+... | +.|+||..||-.
T Consensus 15 ~~rC~~C~kkvgl~-~---f~CrCg~~FC~~ 41 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT-G---FMCRCGTTFCGS 41 (64)
T ss_dssp CCCCTTTCCCCCTT-C---EECSSSCEECTT
T ss_pred CCcChhhCCccCcc-C---EEeecCCEeccc
Confidence 47899999988765 2 889999999975
No 118
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=70.53 E-value=2.3 Score=32.72 Aligned_cols=31 Identities=13% Similarity=0.047 Sum_probs=23.8
Q ss_pred CcCCCCCCcceeecCCCCceEec-cccccccc
Q 008943 276 TKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWL 306 (548)
Q Consensus 276 tK~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~ 306 (548)
.-.||.|+.+++-+.+...+.|. ||..|=-.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAYPIK 39 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 35899999999988888888884 77655333
No 119
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=69.84 E-value=1.3 Score=34.17 Aligned_cols=26 Identities=27% Similarity=0.740 Sum_probs=21.7
Q ss_pred cCCCc-cccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCcceee
Q 008943 233 ACGAQ-FCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (548)
Q Consensus 233 ~Cg~~-fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEK 288 (548)
+||+. ||..|...| +.||-|+.+|.+
T Consensus 41 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV------------------------------DKCPMCYTVITF 67 (74)
T ss_dssp TTCCBCCCHHHHTTC------------------------------SBCTTTCCBCSE
T ss_pred CCCChhHHHHhhhcC------------------------------ccCCCcCcCccC
Confidence 79999 999996532 689999999874
No 120
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=69.15 E-value=1.7 Score=31.33 Aligned_cols=27 Identities=33% Similarity=0.760 Sum_probs=18.3
Q ss_pred CCcCCCCCCccee-ecCCCCceEe-ccccc
Q 008943 275 HTKPCPKCHKPVE-KNGGCNLVSC-ICGQA 302 (548)
Q Consensus 275 ~tK~CPkC~~~IE-Kn~GCnhMtC-~C~~~ 302 (548)
..+.||+|+..+. .+.+ +.+.| +||+.
T Consensus 18 ~~k~CP~CG~~~fm~~~~-~R~~C~kCG~t 46 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHG-DRWACGKCGYT 46 (50)
T ss_dssp SSEECSSSCSSCEEEECS-SEEECSSSCCE
T ss_pred ecccCCCCCCceEEecCC-CeEECCCCCCE
Confidence 4588999998543 3333 67888 58864
No 121
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=69.07 E-value=2.7 Score=28.51 Aligned_cols=26 Identities=19% Similarity=0.583 Sum_probs=23.1
Q ss_pred cCCCCCCcceeecCCCCceEe-cccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGG 309 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~ 309 (548)
..|+.++.+++ ++| .|+...|+.|..
T Consensus 4 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~ 30 (42)
T 1fre_A 4 EKCSEHDERLK-------LYCKDDGTLSCVICRD 30 (42)
T ss_dssp CCCCSSCSSCC-------CCCCSSSSSSCCTTSS
T ss_pred ccchhhCCeee-------EEeCCCCeEEeccCCC
Confidence 57999998888 999 599999999986
No 122
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.60 E-value=2.5 Score=31.25 Aligned_cols=33 Identities=27% Similarity=0.735 Sum_probs=26.5
Q ss_pred cCCCCCCcceeecCCCCceEe-cccccccccccc-cccCCCC
Q 008943 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDHT 316 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~-~~~~~H~ 316 (548)
..|+.++.+++ ++| .|+...|+.|.. ..+.+|.
T Consensus 15 ~~C~~H~e~L~-------lfC~~d~~~iC~~C~~s~eH~~H~ 49 (59)
T 2yrg_A 15 DHCARHGEKLL-------LFCQEDGKVICWLCERSQEHRGHH 49 (59)
T ss_dssp SBCTTTCCBCC-------EEETTTCSEECHHHHTSTTTTTCC
T ss_pred ccChhhCceee-------eecCCCCcEEecccCCCCcCCCCc
Confidence 57999998888 999 599999999986 4444443
No 123
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=68.37 E-value=6.9 Score=30.43 Aligned_cols=36 Identities=11% Similarity=0.273 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
+.|.++++ +|++.+.|+.-|+...||++..++.++.
T Consensus 31 e~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 31 EQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34566666 4899999999999999999999999884
No 124
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=67.93 E-value=2.6 Score=30.20 Aligned_cols=32 Identities=31% Similarity=0.690 Sum_probs=26.0
Q ss_pred cCCCCCCcceeecCCCCceEe-cccccccccccc-cccCCC
Q 008943 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDH 315 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~-~~~~~H 315 (548)
..||.++.+++ ++| .|+...|+.|.. .-+.+|
T Consensus 9 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H 42 (53)
T 2did_A 9 SLCPQHHEALS-------LFCYEDQEAVCLICAISHTHRAH 42 (53)
T ss_dssp CBCTTTCCBCC-------EEESSSCSEECHHHHTSSTTTTS
T ss_pred CcChhhCCeee-------EEeCCCCeEEeccccCCCCCCCC
Confidence 68999998888 999 599999999976 433444
No 125
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=67.78 E-value=22 Score=26.35 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 50 AQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 50 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
.|++.|..++...|++..-+...|...+||.++.+..|.+
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5778899999999999999999999999999999988874
No 126
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=67.38 E-value=1.9 Score=33.31 Aligned_cols=32 Identities=25% Similarity=0.676 Sum_probs=24.1
Q ss_pred cCCCCCCcceeecCCCCceEecccccccccccccccC
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGR 313 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~~ 313 (548)
-.||-|...+.. -++-.|||.||..|...|-.
T Consensus 13 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~~~ 44 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSLDCGHSLCRACITVSNK 44 (79)
T ss_dssp CEETTTTEECSS-----CCCCSSSCCCCHHHHSCCCC
T ss_pred CCCcCCCcccCC-----eeECCCCCHHHHHHHHHHHH
Confidence 479999877653 24457999999999988643
No 127
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.25 E-value=1.2 Score=35.17 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=24.3
Q ss_pred cCCCCCCcceeecCCCCceEeccccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 312 (548)
-.||-|...+..... .-+.-.|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~~~~-~~~~~~CgH~fC~~Ci~~~~ 50 (88)
T 2ct2_A 16 LECPICMESFTEEQL-RPKLLHCGHTICRQCLEKLL 50 (88)
T ss_dssp CBCTTTCCBCCTTSS-CEEECSSSCEEEHHHHHHHH
T ss_pred CCCccCCccccccCC-CeEECCCCChhhHHHHHHHH
Confidence 579999887764321 12333799999999988863
No 128
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=66.93 E-value=2.5 Score=32.50 Aligned_cols=32 Identities=28% Similarity=0.668 Sum_probs=26.0
Q ss_pred cCCCCCCcceeecCCCCceEe-cccccccccccccccCCC
Q 008943 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATGRDH 315 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~~~~~H 315 (548)
..||.++.+++ ++| .|+...|+.|....+.+|
T Consensus 19 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~~H~~H 51 (72)
T 2csv_A 19 RKCPVHGKTME-------LFCQTDQTCICYLCMFQEHKNH 51 (72)
T ss_dssp CBCTTTCCBCC-------EEESSSCCEECHHHHHTTTSSS
T ss_pred CcCcccCCceE-------EEeCCCCeEEccccCCCCCCCC
Confidence 68999998888 999 599999999986433333
No 129
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=66.78 E-value=1 Score=36.17 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=23.5
Q ss_pred cCCCCCCcceeecCCCCceEec-ccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGAT 311 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~~ 311 (548)
-.||-|...+. +-++-. |||.||..|+..|
T Consensus 14 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~ 44 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTA 44 (92)
T ss_dssp TEETTTTEECS-----SCEECTTTCCEECHHHHHHH
T ss_pred CCCCCCChhhc-----CceECCCCCCHHHHHHHHHH
Confidence 47999987765 235666 9999999999875
No 130
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=66.64 E-value=2.7 Score=31.87 Aligned_cols=27 Identities=37% Similarity=0.860 Sum_probs=22.1
Q ss_pred CcCCCCCCcceeecCCCCceEeccccccccc
Q 008943 276 TKPCPKCHKPVEKNGGCNLVSCICGQAFCWL 306 (548)
Q Consensus 276 tK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~ 306 (548)
..+|..|++.+... | +.|+||..||-.
T Consensus 15 ~~rC~~C~kkvgl~-~---f~CrCg~~FC~~ 41 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM-G---FKCKCGSTFCGS 41 (64)
T ss_dssp SCSCTTTCCCCTTS-C---EECTTSCEECSS
T ss_pred CCcChhhCCccccc-C---eEeecCCEeccc
Confidence 46899999987755 2 789999999975
No 131
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=66.61 E-value=4.4 Score=32.18 Aligned_cols=26 Identities=35% Similarity=0.867 Sum_probs=20.7
Q ss_pred CCCCCCcceeecCCCCceEec-cc--ccccccccccc
Q 008943 278 PCPKCHKPVEKNGGCNLVSCI-CG--QAFCWLCGGAT 311 (548)
Q Consensus 278 ~CPkC~~~IEKn~GCnhMtC~-C~--~~FCw~C~~~~ 311 (548)
.||.|+.++|+ |+ || ..||-.|++-.
T Consensus 33 fCPeCgq~Le~--------lkACGA~~yFC~~C~~Li 61 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LKACGAVDYFCQNGHGLI 61 (81)
T ss_dssp ECSSSCSCCCE--------EEETTEEEECCTTTTCCC
T ss_pred cCcchhhHHHH--------HHhcCCcCeeeccCCCEe
Confidence 89999999995 74 87 46898887753
No 132
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=66.02 E-value=1.8 Score=33.31 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=24.1
Q ss_pred cCCCCCCcceeecCCCCceEec-cccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGATG 312 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~~~ 312 (548)
-.||-|...+.. -++-. |||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 47 (74)
T 2yur_A 16 LLCLICKDIMTD-----AVVIPCCGNSYCDECIRTAL 47 (74)
T ss_dssp GSCSSSCCCCTT-----CEECSSSCCEECTTHHHHHH
T ss_pred CCCcCCChHHhC-----CeEcCCCCCHHHHHHHHHHH
Confidence 589999887762 35566 99999999998863
No 133
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=65.91 E-value=2.3 Score=30.31 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=26.2
Q ss_pred cCCCCCCcceeecCCCCceEec-ccccccccccccccC
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGATGR 313 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~~~~ 313 (548)
..||-|...+..... .+.-. |||.||..|+..|-.
T Consensus 6 ~~C~IC~~~~~~~~~--~~~~~~C~H~f~~~Ci~~w~~ 41 (55)
T 1iym_A 6 VECAVCLAELEDGEE--ARFLPRCGHGFHAECVDMWLG 41 (55)
T ss_dssp CCCTTTCCCCCTTSC--CEECSSSCCEECTTHHHHTTT
T ss_pred CcCccCCccccCCCc--eEECCCCCCcccHHHHHHHHH
Confidence 589999888865432 34554 999999999998743
No 134
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=65.75 E-value=2.7 Score=32.71 Aligned_cols=26 Identities=42% Similarity=0.952 Sum_probs=22.4
Q ss_pred cCCCCCCcceeecCCCCceEeccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWL 306 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~ 306 (548)
.+|..|++.+...+ +.|+||..||-.
T Consensus 26 nRC~~CrKkvgL~g----f~CrCg~~FCs~ 51 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCRCGNLFCGL 51 (74)
T ss_dssp TBCSSSCCBCGGGC----EECTTSCEECSS
T ss_pred CcChhhCCcccccC----eecCCCCEechh
Confidence 58999999988764 899999999975
No 135
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=65.08 E-value=1.4 Score=33.36 Aligned_cols=36 Identities=31% Similarity=0.604 Sum_probs=25.1
Q ss_pred cCCCCCCcceeec--CCCCceEeccccccccccccccc
Q 008943 277 KPCPKCHKPVEKN--GGCNLVSCICGQAFCWLCGGATG 312 (548)
Q Consensus 277 K~CPkC~~~IEKn--~GCnhMtC~C~~~FCw~C~~~~~ 312 (548)
..||-|...+... +|-.-+.-.|||.||+.|...|-
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 48 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 48 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHH
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHH
Confidence 6799999887653 23222333699999999988863
No 136
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.00 E-value=1.6 Score=33.16 Aligned_cols=31 Identities=29% Similarity=0.695 Sum_probs=23.8
Q ss_pred cCCCCCCcceeecCCCCceEeccccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 312 (548)
..||-|...+.. -++-.|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~ 46 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSLPCKHVFCYLCVKGAS 46 (71)
T ss_dssp CBCSSSSSBCSS-----EEEETTTEEEEHHHHHHCT
T ss_pred CCCccCCcccCC-----CEEccCCCHHHHHHHHHHH
Confidence 579999877643 2455799999999998864
No 137
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=64.77 E-value=13 Score=29.55 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
.|.+++++ |++...|+..|+...||+++.++.++.
T Consensus 32 ~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 32 SINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45555654 999999999999999999999999885
No 138
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=64.04 E-value=2.9 Score=29.54 Aligned_cols=32 Identities=28% Similarity=0.612 Sum_probs=25.7
Q ss_pred cCCCCC-CcceeecCCCCceEe-cccccccccccccccCCC
Q 008943 277 KPCPKC-HKPVEKNGGCNLVSC-ICGQAFCWLCGGATGRDH 315 (548)
Q Consensus 277 K~CPkC-~~~IEKn~GCnhMtC-~C~~~FCw~C~~~~~~~H 315 (548)
..||.+ +.++. ++| .|+...|+.|...-+.+|
T Consensus 7 ~~C~~H~~e~l~-------lfC~~~~~~iC~~C~~~~H~~H 40 (50)
T 2yvr_A 7 VYCNVHKHEPLV-------LFCESCDTLTCRDCQLNAHKDH 40 (50)
T ss_dssp CBCSSSTTCBCC-------EEETTTTEEECHHHHHTTTTTC
T ss_pred CcCcCCCCCCEE-------EEeCCCCEEEecccCCCcCCCC
Confidence 579999 88888 999 599999999976433444
No 139
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.84 E-value=1.8 Score=33.03 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=20.6
Q ss_pred cCCCCCCcceeecCCCCceEe-cccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~~ 311 (548)
-.||-|...+.. -++- .|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~ 46 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTITECLHTFCKSCIVRH 46 (72)
T ss_dssp GSCTTTSSCCSS-----CEECSSSCCEECHHHHHHH
T ss_pred CCCCCCChHHHC-----cCEECCCCCHHHHHHHHHH
Confidence 589999887764 2444 57777777776664
No 140
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=63.71 E-value=19 Score=26.48 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 49 AAQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 49 ~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
..|.+.|..++...|++..-+...|...+||.++.+..|.+
T Consensus 4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35778899999999999999999999999999999999885
No 141
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=63.40 E-value=2.3 Score=35.52 Aligned_cols=38 Identities=21% Similarity=0.461 Sum_probs=24.0
Q ss_pred cCCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCcceeecCC
Q 008943 233 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGG 291 (548)
Q Consensus 233 ~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEKn~G 291 (548)
+|++.||..|... |...... .....||-|+..+.+..|
T Consensus 60 ~C~H~Fh~~Ci~~------------wl~~~~~---------~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 60 KCSHAFHLLCLLA------------MYCNGNK---------DGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp SSCCEECHHHHHH------------HHHHTCC---------SSCCBCTTTCCBSSSCSS
T ss_pred CCCCcccHHHHHH------------HHHcccC---------CCCCcCCCCCCccCCCCC
Confidence 5999999999753 3211000 123689999998875433
No 142
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=63.38 E-value=2 Score=35.69 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=24.6
Q ss_pred cCCCCCCcceeecCCCCceEe-ccccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATG 312 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~~~ 312 (548)
-.||-|...+.. -++. .|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 47 (108)
T 2ckl_A 16 LMCVLCGGYFID-----ATTIIECLHSFCKTCIVRYL 47 (108)
T ss_dssp TBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHH
T ss_pred CCCccCChHHhC-----cCEeCCCCChhhHHHHHHHH
Confidence 589999888753 4676 799999999988863
No 143
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.25 E-value=13 Score=27.79 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
+.|.++++ +|++...|+.-|+..+||++..++.++.
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 11 DCVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34666666 5999999999999999999999998885
No 144
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=63.21 E-value=12 Score=28.07 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008943 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (548)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (548)
+.|+++++ +|++...|+.-|+...||++..++.++..
T Consensus 11 ~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 11 KALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 34566665 59999999999999999999999888863
No 145
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=62.85 E-value=3.2 Score=32.32 Aligned_cols=28 Identities=36% Similarity=0.874 Sum_probs=22.9
Q ss_pred CCcCCCCCCcceeecCCCCceEeccccccccc
Q 008943 275 HTKPCPKCHKPVEKNGGCNLVSCICGQAFCWL 306 (548)
Q Consensus 275 ~tK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~ 306 (548)
...+|..|++.+... | +.|+|+..||-.
T Consensus 24 ~~~RC~~C~kkvgL~-~---f~CrCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT-G---FKCRCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTT-C---EECTTSCEECTT
T ss_pred cCccchhhcCccccc-c---eEeccCCEeccc
Confidence 347899999888766 2 899999999974
No 146
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=61.87 E-value=3.6 Score=33.00 Aligned_cols=28 Identities=32% Similarity=0.674 Sum_probs=22.3
Q ss_pred CcCCCCCCcceeecCCCCceEeccccccccc
Q 008943 276 TKPCPKCHKPVEKNGGCNLVSCICGQAFCWL 306 (548)
Q Consensus 276 tK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~ 306 (548)
..+|..|++.+-...| +.|+||..||-.
T Consensus 25 ~~rC~~C~kkvgl~~~---f~CrCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLATS---FECRCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSSSC---EECTTCCEECTT
T ss_pred CccchhhCCeecccCC---eEcCCCCEeccc
Confidence 4789999987765433 899999999974
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=61.68 E-value=3.4 Score=39.96 Aligned_cols=29 Identities=7% Similarity=-0.089 Sum_probs=18.6
Q ss_pred cccCCCCCCCCceEEeccCceeeeeccCCCccccCcCc
Q 008943 207 VKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLS 244 (548)
Q Consensus 207 ~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~ 244 (548)
...|| -|...+. . -|+-+||+.||..|..
T Consensus 208 ~~~c~---i~~~~~~-----d-Pv~~~~gh~f~~~~i~ 236 (281)
T 2c2l_A 208 YLCGK---ISFELMR-----E-PCITPSGITYDRKDIE 236 (281)
T ss_dssp TTBCT---TTCSBCS-----S-EEECSSCCEEETTHHH
T ss_pred ccCCc---CcCCHhc-----C-CeECCCCCEECHHHHH
Confidence 44676 5655443 1 1444699999999854
No 148
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=61.57 E-value=2.4 Score=33.01 Aligned_cols=30 Identities=30% Similarity=0.702 Sum_probs=23.2
Q ss_pred cCCCCCCcceeecCCCCceEecccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 311 (548)
-.||-|...+.. -+.-.|||.||..|+..|
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 49 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSADCNHSFCRACITLN 49 (85)
T ss_dssp TSCTTTCSCCSS-----CEECTTSCCBCHHHHHHH
T ss_pred CCCcCCChhhCc-----ceeCCCCCHHHHHHHHHH
Confidence 589999887753 245579999999998875
No 149
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.29 E-value=2.3 Score=32.02 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=23.2
Q ss_pred cCCCCCCcceeecCCCCceEeccccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 312 (548)
..||-|...+.. +.=.|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~ 45 (70)
T 2ecn_A 16 EECCICMDGRAD------LILPCAHSFCQKCIDKWS 45 (70)
T ss_dssp CCCSSSCCSCCS------EEETTTEEECHHHHHHSS
T ss_pred CCCeeCCcCccC------cccCCCCcccHHHHHHHH
Confidence 689999887653 444799999999988864
No 150
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.19 E-value=1.6 Score=31.50 Aligned_cols=30 Identities=27% Similarity=0.596 Sum_probs=23.8
Q ss_pred cCCCCCCcceeecCCCCceEecccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 311 (548)
-.||-|...+... +.-.|||.||..|...|
T Consensus 16 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-----VIIECGHNFCKACITRW 45 (58)
T ss_dssp CBCSSSCCBCSSC-----CCCSSCCCCCHHHHHHH
T ss_pred CCCccCCcccCcc-----EeCCCCCccCHHHHHHH
Confidence 5799998877642 33479999999999986
No 151
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=61.07 E-value=1.9 Score=31.64 Aligned_cols=36 Identities=31% Similarity=0.604 Sum_probs=23.9
Q ss_pred cCCCCCCcceeec--CCCCceEeccccccccccccccc
Q 008943 277 KPCPKCHKPVEKN--GGCNLVSCICGQAFCWLCGGATG 312 (548)
Q Consensus 277 K~CPkC~~~IEKn--~GCnhMtC~C~~~FCw~C~~~~~ 312 (548)
..||-|...+... ++=.-+.-.|||.||..|...|-
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 41 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 41 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHH
Confidence 4788888877643 22112333699999999988863
No 152
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=60.91 E-value=3.4 Score=28.95 Aligned_cols=32 Identities=16% Similarity=0.520 Sum_probs=25.0
Q ss_pred cCCCCCC-cceeecCCCCceEe-cccccccccccc-cccCCC
Q 008943 277 KPCPKCH-KPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDH 315 (548)
Q Consensus 277 K~CPkC~-~~IEKn~GCnhMtC-~C~~~FCw~C~~-~~~~~H 315 (548)
..|+.+. .+++ ++| .|+...||.|.. .-+.+|
T Consensus 7 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H 41 (48)
T 3ddt_A 7 PMCKEHEDEKIN-------IYCLTCEVPTCSMCKVFGIHKAC 41 (48)
T ss_dssp CBCSSSTTSBCC-------EEETTTTEEECHHHHHHSTTTTS
T ss_pred CcCCCCCCcccc-------EEcCCCCeeEcccccCCCcCCCC
Confidence 5799998 8888 999 599999999963 334444
No 153
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=60.05 E-value=19 Score=25.91 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 52 KEDLRRVMELLSL-REHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 52 ~~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
.+.|.+++++ |+ +.+.++..|+...||+++.++.++.
T Consensus 12 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 12 QQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4566777765 78 8899999999999999999999885
No 154
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=60.00 E-value=2.2 Score=34.72 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=24.5
Q ss_pred cCCCCCCcceeecCCCCceEe-ccccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATG 312 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~~~ 312 (548)
-.||-|...+.. -++. .|||.||..|...|-
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 54 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFL 54 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHH
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHH
Confidence 589999987763 3566 699999999998864
No 155
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=59.57 E-value=4.6 Score=33.75 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=23.5
Q ss_pred cCCCCCCcceeecCCCCceEeccccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 312 (548)
-.||-|...+.. -++=.|||.||..|...|-
T Consensus 16 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 46 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTLPCNHTLCKPCFQSTV 46 (115)
T ss_dssp HBCTTTCSBCSS-----CEECTTSCEECHHHHCCCC
T ss_pred CCCccCCcccCc-----eeEcCCCCHHhHHHHHHHH
Confidence 479999877653 2333799999999998863
No 156
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=59.13 E-value=4.7 Score=31.77 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=26.4
Q ss_pred cCCCCC-CcceeecCCCCceEe-cccccccccccc-cccCCCC
Q 008943 277 KPCPKC-HKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDHT 316 (548)
Q Consensus 277 K~CPkC-~~~IEKn~GCnhMtC-~C~~~FCw~C~~-~~~~~H~ 316 (548)
..||.+ +.+++ ++| .|+...|+.|.. ..+.+|.
T Consensus 19 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H~ 54 (84)
T 2dja_A 19 ITCLDHENEKVN-------MYCVSDDQLICALCKLVGRHRDHQ 54 (84)
T ss_dssp CCCSSCSSSCCC-------EEETTTTEEECHHHHHTSTTTTCC
T ss_pred CcCcCcCCcccc-------EEcCCCCceEcccCcCCCCCCCCC
Confidence 579999 58888 999 599999999986 4444453
No 157
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=58.56 E-value=5.9 Score=40.88 Aligned_cols=34 Identities=29% Similarity=0.772 Sum_probs=24.1
Q ss_pred eeccCCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCcceee
Q 008943 230 VECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (548)
Q Consensus 230 v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEK 288 (548)
+.-+||+.||..|... |. ......||.|+.+|..
T Consensus 346 v~lpCGH~FC~~Ci~~------------wl-------------~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 346 KIEPCGHLMCTSCLTS------------WQ-------------ESEGQGCPFCRCEIKG 379 (389)
T ss_dssp EEETTCCEECHHHHHH------------HH-------------HHTCSBCTTTCCBCCE
T ss_pred EEeCCCChhhHHHHHH------------HH-------------hcCCCCCCCCCCccCC
Confidence 3347999999998642 22 2234789999999874
No 158
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=57.81 E-value=23 Score=27.34 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=29.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008943 55 LRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (548)
Q Consensus 55 i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (548)
|.++++ +|++...|+.-|+..+||++.-++.++..
T Consensus 33 v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 33 VDTLLS-FGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 444554 49999999999999999999999988853
No 159
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=57.77 E-value=3.2 Score=31.16 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=23.7
Q ss_pred cCCCCCCcceeecCCCCceEeccccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 312 (548)
..||-|...+.... ..+.-.|||.||+.|+..|-
T Consensus 15 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~ 48 (69)
T 2kiz_A 15 EKCTICLSILEEGE--DVRRLPCMHLFHQVCVDQWL 48 (69)
T ss_dssp CSBTTTTBCCCSSS--CEEECTTSCEEEHHHHHHHH
T ss_pred CCCeeCCccccCCC--cEEEeCCCCHHHHHHHHHHH
Confidence 68999988775322 22333689999999988863
No 160
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=57.67 E-value=4.1 Score=31.33 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=21.6
Q ss_pred cCCCCCCcceeecCCCCceEeccccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 312 (548)
..||-|...+.... ..+.-.|+|.||+.|+..|-
T Consensus 16 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~ 49 (78)
T 2ect_A 16 LECPVCKEDYALGE--SVRQLPCNHLFHDSCIVPWL 49 (78)
T ss_dssp CCCTTTTSCCCTTS--CEEECTTSCEEETTTTHHHH
T ss_pred CCCeeCCccccCCC--CEEEeCCCCeecHHHHHHHH
Confidence 68999987765332 11222577777777877753
No 161
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=57.43 E-value=2.3 Score=37.39 Aligned_cols=30 Identities=20% Similarity=0.702 Sum_probs=24.3
Q ss_pred cCCCCCCcceeecCCCCceEecccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 311 (548)
-.||-|...+... ++..|||.||..|...|
T Consensus 32 ~~C~IC~~~~~~p-----v~~~CgH~FC~~Ci~~~ 61 (141)
T 3knv_A 32 YLCSACRNVLRRP-----FQAQCGHRYCSFCLASI 61 (141)
T ss_dssp GBCTTTCSBCSSE-----EECTTSCEEEHHHHHHH
T ss_pred cCCCCCChhhcCc-----EECCCCCccCHHHHHHH
Confidence 4899999877532 66689999999999886
No 162
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.40 E-value=2.3 Score=31.70 Aligned_cols=36 Identities=31% Similarity=0.570 Sum_probs=24.4
Q ss_pred cCCCCCCcceeecC--CCCceEeccccccccccccccc
Q 008943 277 KPCPKCHKPVEKNG--GCNLVSCICGQAFCWLCGGATG 312 (548)
Q Consensus 277 K~CPkC~~~IEKn~--GCnhMtC~C~~~FCw~C~~~~~ 312 (548)
..||-|...+.... +-.-+.-.|||.||..|...|-
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 53 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 53 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHH
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHH
Confidence 67999988876432 2211333689999999988863
No 163
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.29 E-value=2.7 Score=32.07 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=23.6
Q ss_pred cCCCCCCcceeecCCCCceEeccccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 312 (548)
..||-|...+..... .+...|+|.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~~~~--~~~~~C~H~f~~~Ci~~~~ 49 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDE--LGICPCKHAFHRKCLIKWL 49 (74)
T ss_dssp CBCSSSCCBCCSSSC--EEEETTTEEEEHHHHHHHH
T ss_pred CCCcCCCcccCCCCc--EEEcCCCCEecHHHHHHHH
Confidence 589999888764332 1233688888888888763
No 164
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.24 E-value=2.8 Score=32.65 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=22.0
Q ss_pred cCCCCCCcceeecCCCCceEecccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 311 (548)
-.||-|...+.. -++-.|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 45 (81)
T 2csy_A 16 FRCFICRQAFQN-----PVVTKCRHYFCESCALEH 45 (81)
T ss_dssp SBCSSSCSBCCS-----EEECTTSCEEEHHHHHHH
T ss_pred CCCcCCCchhcC-----eeEccCCCHhHHHHHHHH
Confidence 579999887753 234468888888888775
No 165
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=57.01 E-value=3.3 Score=32.51 Aligned_cols=26 Identities=38% Similarity=0.982 Sum_probs=21.4
Q ss_pred cCCCc-cccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCcceee
Q 008943 233 ACGAQ-FCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (548)
Q Consensus 233 ~Cg~~-fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEK 288 (548)
+||+. ||..|...+ +.||-|+.+|.+
T Consensus 35 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 35 PCGHTVCCESCAAQL------------------------------QSCPVCRSRVEH 61 (79)
T ss_dssp TTCBCCBCHHHHTTC------------------------------SBCTTTCCBCCE
T ss_pred CCCCHHHHHHHHHhc------------------------------CcCCCCCchhhC
Confidence 79999 999996531 489999999984
No 166
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.53 E-value=2.8 Score=32.61 Aligned_cols=30 Identities=33% Similarity=0.749 Sum_probs=22.4
Q ss_pred cCCCCCCcceeecCCCCceEecccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 311 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 311 (548)
-.||-|...+.. -++-.|||.||..|+..|
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 49 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSLDCGHSFCQACLTAN 49 (85)
T ss_dssp CCCTTTCSCCSS-----CBCCSSSCCBCTTHHHHH
T ss_pred CCCCCCCcccCC-----ceeCCCCCHHHHHHHHHH
Confidence 589999987753 233368888898888775
No 167
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=54.58 E-value=3.9 Score=35.72 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=20.3
Q ss_pred cccccCCCCCCCCceEEeccC---ceeeeecc-CCCc
Q 008943 205 KMVKWCPSTPHCGNAIRVEEV---EVCEVECA-CGAQ 237 (548)
Q Consensus 205 ~~~~~CP~~p~C~~~i~~~~~---~~~~v~C~-Cg~~ 237 (548)
..+++|| .|++.+.+..+ ......|+ |++.
T Consensus 22 ~~~~FCP---eCgNmL~pked~~~~~l~~~CrtCgY~ 55 (133)
T 3qt1_I 22 TTFRFCR---DCNNMLYPREDKENNRLLFECRTCSYV 55 (133)
T ss_dssp CCCCBCT---TTCCBCBCCBCTTTCCBCCBCSSSCCB
T ss_pred cCCeeCC---CCCCEeeECccCCCceeEEECCCCCCc
Confidence 4678998 79999987653 23345665 6664
No 168
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=54.26 E-value=14 Score=36.11 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008943 47 LLAAQKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (548)
Q Consensus 47 l~~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (548)
+...+++.|.+-+.+.|.++..|+..|..++|+.+..++.|++.
T Consensus 11 l~~~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~ 54 (270)
T 3bq3_A 11 DASPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDK 54 (270)
T ss_dssp --CHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34457778999999999999999999999999999999999963
No 169
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=53.65 E-value=3.1 Score=34.46 Aligned_cols=31 Identities=29% Similarity=0.598 Sum_probs=23.1
Q ss_pred cCCCCCCcceeecCCCCceEeccccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 312 (548)
-.||-|...+.. -++-.|||.||+.|...|-
T Consensus 22 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 52 (112)
T 1jm7_A 22 LECPICLELIKE-----PVSTKCDHIFCKFCMLKLL 52 (112)
T ss_dssp TSCSSSCCCCSS-----CCBCTTSCCCCSHHHHHHH
T ss_pred CCCcccChhhcC-----eEECCCCCHHHHHHHHHHH
Confidence 589999987752 2334699999999988753
No 170
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=53.42 E-value=5.7 Score=29.48 Aligned_cols=33 Identities=15% Similarity=0.504 Sum_probs=26.2
Q ss_pred cCCCCC-CcceeecCCCCceEe-cccccccccccc-cccCCCC
Q 008943 277 KPCPKC-HKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDHT 316 (548)
Q Consensus 277 K~CPkC-~~~IEKn~GCnhMtC-~C~~~FCw~C~~-~~~~~H~ 316 (548)
..||.+ +.+++ ++| .|+...|+.|.. .-+.+|.
T Consensus 9 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H~ 44 (64)
T 2d8u_A 9 PMCKEHEDEKIN-------IYCLTCEVPTCSMCKVFGIHKACE 44 (64)
T ss_dssp CCCSSCTTCCCC-------SEESSSCCCCCSHHHHSSSTTSSC
T ss_pred CcCcCcCCCccc-------eEcCcCCceeCccccCCCcCCCCC
Confidence 579999 88888 999 599999999975 3444453
No 171
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.37 E-value=2.4 Score=32.43 Aligned_cols=28 Identities=36% Similarity=0.770 Sum_probs=21.6
Q ss_pred CcCCCCCCcceeecC--CCCceEeccccccccc
Q 008943 276 TKPCPKCHKPVEKNG--GCNLVSCICGQAFCWL 306 (548)
Q Consensus 276 tK~CPkC~~~IEKn~--GCnhMtC~C~~~FCw~ 306 (548)
..+|-.|++.+...+ | +.|+||..||-.
T Consensus 15 ~~rC~~C~kk~gL~~~eg---f~CrCg~~FC~~ 44 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQEL---GSCRCGYVFCML 44 (67)
T ss_dssp TTBCSSSCCBCCHHHHHH---HCCSSSCCCCTT
T ss_pred CCcchhhCCeecccccCc---eEecCCCEehhc
Confidence 468999998887442 3 579999999974
No 172
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=52.28 E-value=6.8 Score=31.56 Aligned_cols=53 Identities=26% Similarity=0.625 Sum_probs=37.7
Q ss_pred CCCceEEeccCceeeeecc-CCCccccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCcceeecCCC
Q 008943 215 HCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGC 292 (548)
Q Consensus 215 ~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEKn~GC 292 (548)
-|+--|....+....|-|. |+...|..|.. +. .+...+.||.|+.+..+..|+
T Consensus 21 iCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE----------YE---------------rkeG~q~CpqCktrYkr~kgs 74 (93)
T 1weo_A 21 ICGDQIGLTVEGDLFVACNECGFPACRPCYE----------YE---------------RREGTQNCPQCKTRYKRLRGS 74 (93)
T ss_dssp SSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH----------HH---------------HHTSCSSCTTTCCCCCCCTTC
T ss_pred cccCccccCCCCCEEEeeeccCChhhHHHHH----------HH---------------HhccCccccccCCccccccCC
Confidence 5777776666666778997 99999988753 11 233558999999998765554
No 173
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.18 E-value=26 Score=27.80 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008943 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (548)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (548)
.|.++++ +|++...|+..|+..+||++.-++.+++.
T Consensus 32 ~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 32 ALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 4556666 59999999999999999999999998864
No 174
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=50.89 E-value=3.4 Score=30.79 Aligned_cols=31 Identities=26% Similarity=0.626 Sum_probs=19.9
Q ss_pred CcCCCCCCcceeecCCCCceEe-cccccccccccccc
Q 008943 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (548)
Q Consensus 276 tK~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~~ 311 (548)
...||-|...+... ..- .|||.||+.|...|
T Consensus 5 ~~~C~IC~~~~~~~-----~~~~~C~H~fc~~Ci~~~ 36 (68)
T 1chc_A 5 AERCPICLEDPSNY-----SMALPCLHAFCYVCITRW 36 (68)
T ss_dssp CCCCSSCCSCCCSC-----EEETTTTEEESTTHHHHH
T ss_pred CCCCeeCCccccCC-----cEecCCCCeeHHHHHHHH
Confidence 36899998877521 122 46777777776664
No 175
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=50.55 E-value=27 Score=24.98 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 53 EDLRRVMELLSL-REHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 53 ~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
+.|.+++++ |+ +...++..|+...||++..++.++.
T Consensus 14 ~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 14 QQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 456666664 88 8889999999999999999988773
No 176
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=49.92 E-value=9.2 Score=29.29 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=19.1
Q ss_pred cCCCCCCcceeecCCCCceEec-ccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAF 303 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~-C~~~F 303 (548)
-.||.|+.+++-+.+=..+.|. ||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 5799999998866544557773 66554
No 177
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=49.52 E-value=9.7 Score=29.33 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=21.6
Q ss_pred CcCCCCCCcceeecCCCCceEe-ccccccccc
Q 008943 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWL 306 (548)
Q Consensus 276 tK~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~ 306 (548)
.-.||.|+.+++-+.+=..+.| .||..|=-.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAFPVR 39 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEEEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCceecCC
Confidence 3589999999987655455788 476655333
No 178
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.23 E-value=3.9 Score=29.99 Aligned_cols=32 Identities=25% Similarity=0.700 Sum_probs=25.7
Q ss_pred cCCCCCCcceeecCCCCceEe-cccccccccccc-cccCCC
Q 008943 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGG-ATGRDH 315 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~-~~~~~H 315 (548)
..|+.++.+++ ++| .|+...|+.|.. .-+.+|
T Consensus 19 ~~C~~H~e~L~-------lfC~~d~~~iC~~C~~~~eH~~H 52 (57)
T 2egm_A 19 GICPKHQEALK-------LFCEVDEEAICVVCRESRSHKQH 52 (57)
T ss_dssp SBCTTTCCBCC-------EEETTTTEEECHHHHHSHHHHSS
T ss_pred CcChhhCceee-------EEcCCCCcEEecccCCCCCCCCC
Confidence 57999998888 999 599999999986 333344
No 179
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=49.10 E-value=34 Score=27.27 Aligned_cols=38 Identities=11% Similarity=0.297 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 008943 52 KEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVEN 90 (548)
Q Consensus 52 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 90 (548)
.+.|.++++ +|++...|+..|+..+|+++..++.+++.
T Consensus 22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 556777777 49999999999999999999999999864
No 180
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=48.89 E-value=2.8 Score=33.64 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=24.7
Q ss_pred cCCCCCCcceeecCCCCceEecccccccccccccccC
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGR 313 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~~ 313 (548)
..||-|...+..... .+.-.|||.||+.|...|-.
T Consensus 41 ~~C~IC~~~~~~~~~--~~~l~C~H~Fh~~Ci~~wl~ 75 (91)
T 2l0b_A 41 MCCPICCSEYVKGDV--ATELPCHHYFHKPCVSIWLQ 75 (91)
T ss_dssp SEETTTTEECCTTCE--EEEETTTEEEEHHHHHHHHT
T ss_pred CCCcccChhhcCCCc--EEecCCCChHHHHHHHHHHH
Confidence 569999877654331 23336999999999998743
No 181
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.00 E-value=6.2 Score=30.86 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=17.2
Q ss_pred CCCCceEecccccccccccccccC
Q 008943 290 GGCNLVSCICGQAFCWLCGGATGR 313 (548)
Q Consensus 290 ~GCnhMtC~C~~~FCw~C~~~~~~ 313 (548)
+.+..+.-.|+|.|+..|+..|-.
T Consensus 39 ~~~~~~~~~C~H~FH~~Ci~~Wl~ 62 (81)
T 2ecl_A 39 EDCVVVWGECNHSFHNCCMSLWVK 62 (81)
T ss_dssp TTCCEEEETTSCEEEHHHHHHHTT
T ss_pred CceEEEeCCCCCccChHHHHHHHH
Confidence 344444556999999999998754
No 182
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=47.74 E-value=11 Score=28.91 Aligned_cols=27 Identities=22% Similarity=0.520 Sum_probs=19.2
Q ss_pred cCCCCCCcceeecCCCCceEec-ccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAF 303 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~-C~~~F 303 (548)
-.||.|+.+++-..+=..+.|. ||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 5899999998865544557773 66554
No 183
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=47.04 E-value=32 Score=24.89 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCCHHH-HHHHHHHcCCChHHHHHHHHh
Q 008943 53 EDLRRVMELLSLREHH-ARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 53 ~~i~~v~~~l~i~~~~-a~~LL~~~~W~~~~l~~~~~~ 89 (548)
+.|.++.++ |++..+ ++..|+..+||+++.++.++.
T Consensus 11 ~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 11 VQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 356666666 886554 699999999999999999985
No 184
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=46.32 E-value=35 Score=25.57 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-ChHHHHHHHHh
Q 008943 54 DLRRVMELLSLREHHARTLLIHYRW-DVEKLLAVLVE 89 (548)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~W-~~~~l~~~~~~ 89 (548)
.|.++++ +|++...|+..|+...| |++.-++-+++
T Consensus 22 ~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 22 ALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4666666 59999999999999999 99999998885
No 185
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=45.49 E-value=28 Score=25.72 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=33.4
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 52 KEDLRRVMELL-SLREHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 52 ~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
+++|..+++++ ++.....+..|...+++++..++.+.+
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35666777888 899999999999999999999999986
No 186
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=45.21 E-value=1.9e+02 Score=27.27 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008943 434 HLFEDQQQQLEANVEKLSKFLEEPFDQY---PDDKVMEIRMQVINLSVITDTLCKKMYECIENDLLGCL 499 (548)
Q Consensus 434 ~lfe~~Q~~lE~~~E~L~~~le~~~~~~---~~~~i~~~k~~~~~l~~~~~~~~~~l~~~~e~~l~~~~ 499 (548)
-+.+..+..++.+++.|...++-....+ ...-+.++|.++.-++.-+...+..+++.|...|.+..
T Consensus 165 P~~ee~r~kl~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~p~~e~lk~~l~p~~e~~~~~l~~~~ 233 (243)
T 2a01_A 165 PYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSAL 233 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4667778888888888888776333222 22335666666666555555555566666666555433
No 187
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=45.01 E-value=14 Score=31.20 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=21.8
Q ss_pred CcCCCCCCcceee-c---CCCCceEec-ccccc
Q 008943 276 TKPCPKCHKPVEK-N---GGCNLVSCI-CGQAF 303 (548)
Q Consensus 276 tK~CPkC~~~IEK-n---~GCnhMtC~-C~~~F 303 (548)
.+.||.|+.++.- . .|.+.+.|+ |++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 4789999987643 2 378899995 99976
No 188
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.45 E-value=41 Score=25.97 Aligned_cols=38 Identities=8% Similarity=0.075 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-CChHHHHHHHHhcC
Q 008943 53 EDLRRVMELLSLREHHARTLLIHYR-WDVEKLLAVLVENG 91 (548)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~-W~~~~l~~~~~~~~ 91 (548)
+.|.++++ +|++...|+..|+... |+++.-++.+++..
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 11 SVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMSHM 49 (74)
T ss_dssp HHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 34556666 5999999999999887 68999999998643
No 189
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=44.44 E-value=13 Score=29.30 Aligned_cols=40 Identities=25% Similarity=0.702 Sum_probs=25.9
Q ss_pred HHHHHhC-CcCCCCCCcceeecCCCCceEec-cccccccccccc
Q 008943 269 VNWITVH-TKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 310 (548)
Q Consensus 269 ~~~i~~~-tK~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~ 310 (548)
..|+... ...|+.|+...-- .=-.-.|+ ||.-||..|...
T Consensus 11 ~~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 11 HAWLKDDEATHCRQCEKEFSI--SRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp ----CCCCCCBCTTTCCBCBT--TBCCEECTTTCCEECSGGGCE
T ss_pred CccccCccCCcccCcCCcccC--ccccccCCCCCCEEChHHhCC
Confidence 4577543 5789999987641 12235786 999999999864
No 190
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=44.06 E-value=6.5 Score=32.03 Aligned_cols=47 Identities=26% Similarity=0.555 Sum_probs=34.0
Q ss_pred cccccccccccccccCceecCC-CCccchhhHHHHHHhhhccCCccceecCccccccccchH
Q 008943 115 STVMCDICMEEVAGDKATKMDC-GHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 175 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i~~~ 175 (548)
..+.|-.|+-... -.+.| .|+.|..|++..+.. .=+||. |+..++..
T Consensus 27 G~~nCKsCWf~~k----~LV~C~dHYLCl~CLtlmL~~--------SdrCpI--C~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK----GLVECNNHYLCLNCLTLLLSV--------SNRCPI--CKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS----SEEECSSCEEEHHHHHHTCSS--------SSEETT--TTEECCCC
T ss_pred CcccChhhccccC----CeeeecchhhHHHHHHHHHhh--------ccCCcc--cCCcCCcc
Confidence 4578999987642 22345 599999999998765 237998 88877643
No 191
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=43.51 E-value=20 Score=32.83 Aligned_cols=31 Identities=6% Similarity=-0.150 Sum_probs=19.7
Q ss_pred cccccCCCCCCCCceEEeccCceeeeeccCCCccccCcCc
Q 008943 205 KMVKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLS 244 (548)
Q Consensus 205 ~~~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~ 244 (548)
+....|| -|...+. .+ |.-+||+.||..|-.
T Consensus 104 p~~f~CP---I~~elm~-----DP-V~~~~Ghtfer~~I~ 134 (179)
T 2f42_A 104 PDYLCGK---ISFELMR-----EP-CITPSGITYDRKDIE 134 (179)
T ss_dssp CGGGBCT---TTCSBCS-----SE-EECTTSCEEEHHHHH
T ss_pred cHhhccc---CccccCC-----CC-eECCCCCEECHHHHH
Confidence 3445787 5765543 12 334799999998854
No 192
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=41.90 E-value=15 Score=28.07 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=21.3
Q ss_pred CcCCCCCCcceeecCCCCceEec-cccccccc
Q 008943 276 TKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWL 306 (548)
Q Consensus 276 tK~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~ 306 (548)
.-.||.|+.+++-...=+.+.|. ||..|=-.
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAYRID 41 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCccccCC
Confidence 35899999999866444557784 77655333
No 193
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=41.33 E-value=12 Score=32.62 Aligned_cols=29 Identities=17% Similarity=0.423 Sum_probs=22.1
Q ss_pred CCcCCCCCCccee-ec---CCCCceEec-ccccc
Q 008943 275 HTKPCPKCHKPVE-KN---GGCNLVSCI-CGQAF 303 (548)
Q Consensus 275 ~tK~CPkC~~~IE-Kn---~GCnhMtC~-C~~~F 303 (548)
..+.||.|+.++- +. .|.+.+.|+ |++.+
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 4589999998763 22 378899995 99965
No 194
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=40.98 E-value=5.7 Score=33.84 Aligned_cols=37 Identities=19% Similarity=0.481 Sum_probs=0.0
Q ss_pred CCCCCCccee--ecCCCCceEecccccccccccccccCC
Q 008943 278 PCPKCHKPVE--KNGGCNLVSCICGQAFCWLCGGATGRD 314 (548)
Q Consensus 278 ~CPkC~~~IE--Kn~GCnhMtC~C~~~FCw~C~~~~~~~ 314 (548)
.||.|..... ..+.|.-+.-.|+|.|+..|...|-..
T Consensus 61 ~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 61 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 99 (117)
T ss_dssp ---------------------------------------
T ss_pred cChhhhcccccccccccccccCCcCceEcHHHHHHHHHc
Confidence 4455544321 234566666689999999999997543
No 195
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=40.83 E-value=8.3 Score=28.68 Aligned_cols=34 Identities=26% Similarity=0.719 Sum_probs=23.8
Q ss_pred cCCCCCCCCceEEeccCceeeeecc-CCCccccCcCccCCCC
Q 008943 209 WCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEAHSP 249 (548)
Q Consensus 209 ~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~~~~H~p 249 (548)
.|- +|+..+. +. ....|+ |+..||..|-.-.|..
T Consensus 17 ~C~---~C~~~~~--~~--~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCY---GCQGELK--DQ--HVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EET---TTTEECT--TS--EEECCTTTTCCBCHHHHHTTTTT
T ss_pred ccc---ccCcccC--CC--ccEECCccCcCcccchhHHHHhh
Confidence 575 6876653 11 125798 9999999998777764
No 196
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=39.83 E-value=23 Score=28.41 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=26.1
Q ss_pred cccccccccccccccccC--ceecCCCCccchhhHHHHH
Q 008943 113 LSSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEHF 149 (548)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yl 149 (548)
..+...|.+|...|.... .---.||+.||..|....+
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 345568999998875321 1223799999999987654
No 197
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=39.61 E-value=16 Score=37.03 Aligned_cols=27 Identities=26% Similarity=0.796 Sum_probs=22.3
Q ss_pred ccCCCc-cccCcCccCCCCCCchhhHHHHHhhhchHHHHHHHHhCCcCCCCCCcceee
Q 008943 232 CACGAQ-FCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 288 (548)
Q Consensus 232 C~Cg~~-fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEK 288 (548)
=+||+. ||..|...+ +.||-|+.+|.+
T Consensus 311 lpCgH~~fC~~C~~~~------------------------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 311 IPCGHLVVCQECAPSL------------------------------RKCPICRGIIKG 338 (345)
T ss_dssp ETTCCEEECTTTGGGC------------------------------SBCTTTCCBCCE
T ss_pred cCCCChhHhHHHHhcC------------------------------CcCCCCCCCccC
Confidence 379999 999997532 589999999975
No 198
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.42 E-value=62 Score=25.07 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 52 KEDLRRVMELLSL-REHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 52 ~~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
.+.|.+++++ |+ ....++..|+...||+++.++.++.
T Consensus 30 e~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3456777765 77 4677789999999999999999984
No 199
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=38.71 E-value=11 Score=26.59 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
+.|.++.+ +|.+...|...|....||.+.-.+-+++
T Consensus 6 eaI~rL~~-mGF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 6 EAIERLKA-LGFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHHTTTTT-TTCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34555554 4999999999999999999998888774
No 200
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=37.75 E-value=56 Score=25.85 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHc-CCChHHHHHHHHhc
Q 008943 54 DLRRVMELLSLREHHARTLLIHY-RWDVEKLLAVLVEN 90 (548)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~-~W~~~~l~~~~~~~ 90 (548)
.|.++++ +|++...|+..|++. +||++.-++.+++.
T Consensus 32 ~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 32 IVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4555665 599999998888877 59999999998864
No 201
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=37.34 E-value=16 Score=33.78 Aligned_cols=29 Identities=24% Similarity=0.427 Sum_probs=19.5
Q ss_pred CcCCCCCCcce-eecCCCCceEe-cccccccc
Q 008943 276 TKPCPKCHKPV-EKNGGCNLVSC-ICGQAFCW 305 (548)
Q Consensus 276 tK~CPkC~~~I-EKn~GCnhMtC-~C~~~FCw 305 (548)
-+.||+|+..+ .....+.| +| +|++-|++
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~~ 143 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRH-YCGKCHLTLKI 143 (189)
T ss_dssp SEECSTTCSSCEEEECSSCE-EETTTCCCBCC
T ss_pred cccCCccCCCccccCccCCC-ccCCceeEEEe
Confidence 48999999653 44555555 77 67776643
No 202
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=37.30 E-value=37 Score=25.37 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHc-CCChHHHHHHHHhc
Q 008943 54 DLRRVMELLSLREHHARTLLIHY-RWDVEKLLAVLVEN 90 (548)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~-~W~~~~l~~~~~~~ 90 (548)
.|.++++ +|++...|+..|+.. +||++..++-+++.
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 12 ALESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 3455555 699999999999998 79999999998864
No 203
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=37.22 E-value=23 Score=31.64 Aligned_cols=19 Identities=42% Similarity=1.127 Sum_probs=15.2
Q ss_pred cCCCCCCcceeecCCCCceEec--ccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCI--CGQ 301 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~--C~~ 301 (548)
|.||+|.-+++ ++-|+ ||+
T Consensus 111 k~CpnC~g~L~------~~~Crgh~Gy 131 (174)
T 1odh_A 111 KSCPNCNGPLK------LIPCRGHGGF 131 (174)
T ss_dssp SBCSSSCCBEE------EECCCTBTTB
T ss_pred CCCCCCCccee------eEeccCcCCC
Confidence 89999998888 57784 753
No 204
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=37.05 E-value=14 Score=31.59 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=21.6
Q ss_pred CcCCCCCCcceee----cCCCCceEec-ccccc
Q 008943 276 TKPCPKCHKPVEK----NGGCNLVSCI-CGQAF 303 (548)
Q Consensus 276 tK~CPkC~~~IEK----n~GCnhMtC~-C~~~F 303 (548)
.+-||.|+.++.- ..+-+.+.|+ |++.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCee
Confidence 4789999987652 2678899995 99865
No 205
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.61 E-value=2.8e+02 Score=28.12 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=8.3
Q ss_pred HHHHHHHhhhhhhhc
Q 008943 486 KMYECIENDLLGCLQ 500 (548)
Q Consensus 486 ~l~~~~e~~l~~~~~ 500 (548)
.|...+-.+|+..+.
T Consensus 187 QL~qv~a~~llP~~~ 201 (390)
T 1deq_A 187 QLEQVIAINLLPSRD 201 (390)
T ss_pred HHHhhhhhccccccc
Confidence 355555666664443
No 206
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=35.66 E-value=23 Score=25.94 Aligned_cols=25 Identities=40% Similarity=1.071 Sum_probs=17.8
Q ss_pred cCCCCCCcceeecCCCCceEec---ccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCI---CGQAF 303 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~---C~~~F 303 (548)
-.||.|+.+++-.. ..+.|. ||..|
T Consensus 11 L~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred eeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 58999999988766 456664 65443
No 207
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=35.32 E-value=18 Score=32.95 Aligned_cols=24 Identities=25% Similarity=0.930 Sum_probs=20.2
Q ss_pred cCCCCCCcceeecCCCCceEe-ccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSC-ICGQA 302 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC-~C~~~ 302 (548)
-.||+|+.++.+.+ ++|.| .||.-
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCCE
T ss_pred ecccccCCceEECC--CEEECCCCCCE
Confidence 47999999998876 99999 59863
No 208
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=34.98 E-value=11 Score=31.24 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=17.7
Q ss_pred CCCCceEecccccccccccccccCC
Q 008943 290 GGCNLVSCICGQAFCWLCGGATGRD 314 (548)
Q Consensus 290 ~GCnhMtC~C~~~FCw~C~~~~~~~ 314 (548)
++|.-+.-.|+|.|+..|...|-..
T Consensus 64 ~~~~~~~~~C~H~FH~~Ci~~Wl~~ 88 (106)
T 3dpl_R 64 EECTVAWGVCNHAFHFHCISRWLKT 88 (106)
T ss_dssp -CCCEEEETTSCEEEHHHHHHHHTT
T ss_pred ccceEeecccCcEECHHHHHHHHHc
Confidence 4455555679999999999887543
No 209
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.86 E-value=85 Score=33.29 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCCC--CchHHHHHHHHHHHHHHHHHH
Q 008943 432 KQHLFEDQQQQLEANVEKLSKFLEEPFDQY--PDDKVMEIRMQVINLSVITDT 482 (548)
Q Consensus 432 ~~~lfe~~Q~~lE~~~E~L~~~le~~~~~~--~~~~i~~~k~~~~~l~~~~~~ 482 (548)
..+.+...-.+|+++++.|.+.|...+.++ +...|.+++.++..|..-++.
T Consensus 104 NdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 104 RDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445566666666666555443211 122355555566555555543
No 210
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=34.01 E-value=24 Score=33.68 Aligned_cols=35 Identities=29% Similarity=0.786 Sum_probs=0.0
Q ss_pred HHHHHHhCCcCCCCCCc-ceee---cCCCCceEe-cccccc
Q 008943 268 TVNWITVHTKPCPKCHK-PVEK---NGGCNLVSC-ICGQAF 303 (548)
Q Consensus 268 ~~~~i~~~tK~CPkC~~-~IEK---n~GCnhMtC-~C~~~F 303 (548)
|..|+..|. .||+|+. +|.+ |.-=--..| .|+-+|
T Consensus 27 TE~Wv~~n~-yCPnCG~~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 27 TEDWVYRQS-YCPNCGNNPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp HHHHHHHHC-CCTTTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred hHHHHHHCC-cCCCCCChhhhhccCCCcccccccCCcchhh
No 211
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=34.00 E-value=52 Score=24.78 Aligned_cols=39 Identities=13% Similarity=0.013 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHhcC
Q 008943 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVENG 91 (548)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~~ 91 (548)
++|..+.+..|++..+++.-|...+||+++-++.+-.++
T Consensus 11 ~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 11 ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 456778889999999999999999999999998887644
No 212
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=33.97 E-value=33 Score=27.17 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=14.4
Q ss_pred CccccCcCccCCCCCCchh
Q 008943 236 AQFCFSCLSEAHSPCSCSM 254 (548)
Q Consensus 236 ~~fC~~C~~~~H~p~~C~~ 254 (548)
..+|+.|+..-|..-.|..
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~ 23 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPS 23 (83)
T ss_dssp --CCSSSCCSSSCGGGCGG
T ss_pred cCCCCCCCCCCCccccCCC
Confidence 4579999999999877764
No 213
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=33.43 E-value=25 Score=30.05 Aligned_cols=39 Identities=26% Similarity=0.660 Sum_probs=26.6
Q ss_pred HHHHh-CCcCCCCCCcceeecCCCCceEec-cccccccccccc
Q 008943 270 NWITV-HTKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 310 (548)
Q Consensus 270 ~~i~~-~tK~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~ 310 (548)
.|+.. ....|+.|+.+.-- .=-.-.|+ ||.-||..|...
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSV--TVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCS--SSCCEECTTTCCEECGGGSCE
T ss_pred ccccCCCCCCCcCcCCcccc--ccccccCCCCCeEEChHHhCC
Confidence 35432 24689999987642 12335796 999999999765
No 214
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=33.43 E-value=14 Score=28.52 Aligned_cols=24 Identities=25% Similarity=0.704 Sum_probs=13.7
Q ss_pred cCCCCCCcceeecCCCCceEec-ccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCI-CGQ 301 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~-C~~ 301 (548)
-.|+.|+..++...+ .-+.|+ ||+
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EECCCCCCcceeCCC-CCccCCCCCc
Confidence 367777777665432 335563 554
No 215
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=33.33 E-value=75 Score=29.85 Aligned_cols=34 Identities=21% Similarity=0.470 Sum_probs=24.2
Q ss_pred ccccccccccccccC--ceecCCCCccchhhHHHHH
Q 008943 116 TVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEHF 149 (548)
Q Consensus 116 ~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yl 149 (548)
...|.+|...|.... .-.-.||+.||..|-...+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 358999998875321 1223799999999977653
No 216
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=31.37 E-value=46 Score=28.06 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=16.0
Q ss_pred CCCccccCcCcc-CCCCCCchh
Q 008943 234 CGAQFCFSCLSE-AHSPCSCSM 254 (548)
Q Consensus 234 Cg~~fC~~C~~~-~H~p~~C~~ 254 (548)
|....|+.|+.. -|....|..
T Consensus 20 Cp~~~C~~Cg~~~gH~~~~C~~ 41 (124)
T 2lli_A 20 CPHIICSYCGATDDHYSRHCPK 41 (124)
T ss_dssp TTSCCCTTTCCTTTCCTTTGGG
T ss_pred CcCCcCcCCCCcCCccCcccCC
Confidence 667888888887 788777753
No 217
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=31.13 E-value=23 Score=30.26 Aligned_cols=36 Identities=19% Similarity=0.492 Sum_probs=25.1
Q ss_pred ccccccccccccccccC--ceecCCCCccchhhHHHHH
Q 008943 114 SSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEHF 149 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yl 149 (548)
.....|.+|...|.... .---.||+.||..|....+
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCcc
Confidence 34568999998875321 1223799999999977653
No 218
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.75 E-value=32 Score=30.60 Aligned_cols=41 Identities=22% Similarity=0.566 Sum_probs=30.6
Q ss_pred CcCCCCCCcceeecCCCCceEe-cccccccccccccccCCCCc
Q 008943 276 TKPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATGRDHTW 317 (548)
Q Consensus 276 tK~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~~~~~H~w 317 (548)
...|..|..+.---+|. -..| .|++.+|-.|+.....+..|
T Consensus 68 ~~~C~~C~~~fg~l~~~-g~~C~~C~~~VC~~C~~~~~~~~~W 109 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNS-RRQCLECSLFVCKSCSHAHPEEQGW 109 (153)
T ss_dssp GTBCTTTCCBGGGCSSC-CEECTTTCCEECGGGEECCSSSSSC
T ss_pred CccchhhcCccccccCC-CCcCCCCCchhhcccccccCCCCcE
Confidence 47899999988766666 4678 59999999999654334444
No 219
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=30.38 E-value=52 Score=26.47 Aligned_cols=49 Identities=22% Similarity=0.601 Sum_probs=33.9
Q ss_pred cccccccccccccc---cCceec--CCCCccchhhHHHHHHhhhccCCccceecCcccccccc
Q 008943 115 STVMCDICMEEVAG---DKATKM--DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 172 (548)
Q Consensus 115 ~~~~C~IC~e~~~~---~~~~~l--~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~i 172 (548)
....|.||-+++.. .++|.. .|+-..|+.|+..-. ++|. -.||. |+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr----keG~---q~Cpq--CktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER----REGT---QNCPQ--CKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH----HTSC---SSCTT--TCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH----hccC---ccccc--cCCcc
Confidence 34689999999643 234433 788899999986543 4554 57888 87654
No 220
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=30.36 E-value=33 Score=25.97 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=25.3
Q ss_pred ccCCCCCCCCceEEeccCceeeeecc-CCCccccCcC
Q 008943 208 KWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCL 243 (548)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~ 243 (548)
..|| +|++.-.+-+.....|.|. ||...|.-=+
T Consensus 8 VKCp---~C~niq~VFShA~tvV~C~~Cg~~L~~PTG 41 (66)
T 1qxf_A 8 VKCP---DCEHEQVIFDHPSTIVKCIICGRTVAEPTG 41 (66)
T ss_dssp EECT---TTCCEEEEESSCSSCEECSSSCCEEEECCS
T ss_pred EECC---CCCCceEEEecCceEEEcccCCCEEeecCC
Confidence 4688 8998877666666679997 9999886543
No 221
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=29.99 E-value=58 Score=27.41 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=14.1
Q ss_pred ccccCcCccCCCCCCchh
Q 008943 237 QFCFSCLSEAHSPCSCSM 254 (548)
Q Consensus 237 ~fC~~C~~~~H~p~~C~~ 254 (548)
..|+.|+..-|....|..
T Consensus 43 ~~C~~Cg~~GH~~~~C~~ 60 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPH 60 (124)
T ss_dssp SCSSSSSCSSSSTTTSCC
T ss_pred ccccccCCCCCccccCcC
Confidence 479999988888777764
No 222
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=29.90 E-value=26 Score=31.10 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=20.1
Q ss_pred CcCCCC--CCcceeecCCCCceEe-cccccccc
Q 008943 276 TKPCPK--CHKPVEKNGGCNLVSC-ICGQAFCW 305 (548)
Q Consensus 276 tK~CPk--C~~~IEKn~GCnhMtC-~C~~~FCw 305 (548)
-+.||+ |+.-+--..-=+..+| +||+-+++
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred cCcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 389999 9986542211145789 79987765
No 223
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.50 E-value=26 Score=32.86 Aligned_cols=32 Identities=28% Similarity=0.699 Sum_probs=23.9
Q ss_pred cCCCCCCcceeecCCCCceEec-cccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 310 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~ 310 (548)
..|+.|+...-- .--.-.|+ ||.-||..|...
T Consensus 162 ~~C~~C~~~F~~--~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTF--TNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCS--SSCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccCC--cccccccCCcCCEEChHHhCC
Confidence 689999987641 22335786 999999999764
No 224
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=29.41 E-value=28 Score=29.99 Aligned_cols=29 Identities=28% Similarity=0.834 Sum_probs=20.4
Q ss_pred hCCcCCCCCCcceeecCCCCceEec-ccccc
Q 008943 274 VHTKPCPKCHKPVEKNGGCNLVSCI-CGQAF 303 (548)
Q Consensus 274 ~~tK~CPkC~~~IEKn~GCnhMtC~-C~~~F 303 (548)
...-+||+|+...-=.+|= .+.|. |+++|
T Consensus 25 ~~lP~CP~C~seytYeDg~-l~vCPeC~hEW 54 (138)
T 2akl_A 25 STLPPCPQCNSEYTYEDGA-LLVCPECAHEW 54 (138)
T ss_dssp CCSCCCTTTCCCCCEECSS-SEEETTTTEEE
T ss_pred ccCCCCCCCCCcceEecCC-eEECCcccccc
Confidence 3457999999877655553 47784 88776
No 225
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=29.26 E-value=25 Score=28.14 Aligned_cols=27 Identities=26% Similarity=0.805 Sum_probs=17.8
Q ss_pred cCCCCCCcc------eeecCCCCceEec-ccccc
Q 008943 277 KPCPKCHKP------VEKNGGCNLVSCI-CGQAF 303 (548)
Q Consensus 277 K~CPkC~~~------IEKn~GCnhMtC~-C~~~F 303 (548)
=.||.|+.. |.|..|=-++.|+ ||..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 479988765 2345566667774 77766
No 226
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=29.16 E-value=61 Score=29.86 Aligned_cols=36 Identities=17% Similarity=0.365 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
+.|+++.+ +|++.+.|+..|...+|+++...+.++.
T Consensus 165 ekV~~l~~-MGf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 165 KKIENLCA-MGFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34444443 4999999999999999999999988774
No 227
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=29.06 E-value=27 Score=27.57 Aligned_cols=36 Identities=19% Similarity=0.419 Sum_probs=25.4
Q ss_pred cccccccccccccccccC--ceecCCCCccchhhHHHH
Q 008943 113 LSSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEH 148 (548)
Q Consensus 113 ~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~y 148 (548)
..+...|.+|...|.... ----.||+.||..|....
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 345578999999875322 122379999999997664
No 228
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=28.76 E-value=25 Score=34.19 Aligned_cols=24 Identities=42% Similarity=1.009 Sum_probs=17.3
Q ss_pred cCCCCCCcceee--cCCCCceEe-ccc
Q 008943 277 KPCPKCHKPVEK--NGGCNLVSC-ICG 300 (548)
Q Consensus 277 K~CPkC~~~IEK--n~GCnhMtC-~C~ 300 (548)
++||.|+.+|++ .+|=+-.+| .|+
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 799999999997 455444555 354
No 229
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=28.51 E-value=21 Score=34.75 Aligned_cols=24 Identities=25% Similarity=0.757 Sum_probs=17.8
Q ss_pred cCCCCCCcceee--cCCCCceEe-ccc
Q 008943 277 KPCPKCHKPVEK--NGGCNLVSC-ICG 300 (548)
Q Consensus 277 K~CPkC~~~IEK--n~GCnhMtC-~C~ 300 (548)
++||.|+.+|++ .+|=.-.+| .|+
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 799999999997 456555566 365
No 230
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=28.49 E-value=1.4e+02 Score=21.75 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHcCCChHHHHHHHHh
Q 008943 52 KEDLRRVMELLSLR-EHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 52 ~~~i~~v~~~l~i~-~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
.+.|.++.++ |++ .+.++..|+...||+++.++.++.
T Consensus 18 ~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4567777766 774 667799999999999999999884
No 231
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=28.25 E-value=26 Score=27.50 Aligned_cols=34 Identities=29% Similarity=0.744 Sum_probs=24.0
Q ss_pred cccccccccccccccC--ceecCCCCccchhhHHHH
Q 008943 115 STVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEH 148 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~y 148 (548)
+...|.+|...|.... ----.||..||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 4467999998875321 122379999999998764
No 232
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=28.20 E-value=21 Score=30.39 Aligned_cols=38 Identities=26% Similarity=0.519 Sum_probs=22.7
Q ss_pred CcccccccccccccccccC--ceecCCCCccchhhHHHHH
Q 008943 112 PLSSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEHF 149 (548)
Q Consensus 112 ~~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yl 149 (548)
|......|..|-..|.... ----.||..||..|....+
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 3344568999988875321 1233899999999976554
No 233
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=28.16 E-value=1.3e+02 Score=21.27 Aligned_cols=38 Identities=13% Similarity=0.361 Sum_probs=33.5
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 52 KEDLRRVMELL-SLREHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 52 ~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
.+.+..+++++ +++...++..|...++|++..++.+..
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46778888898 799999999999999999999988775
No 234
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=27.79 E-value=21 Score=31.02 Aligned_cols=27 Identities=30% Similarity=0.751 Sum_probs=0.0
Q ss_pred ccccccccc-cccCceec--CCCCccchhh
Q 008943 118 MCDICMEEV-AGDKATKM--DCGHCFCNDC 144 (548)
Q Consensus 118 ~C~IC~e~~-~~~~~~~l--~CgH~fC~~C 144 (548)
.|.+|..++ -....-.. .|.|.+|..|
T Consensus 57 ~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 57 RCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp BCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred cccccCCCcccccCCCCCCCCCCccccccc
No 235
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.52 E-value=39 Score=25.34 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=25.2
Q ss_pred ccCCCCCCCCceEEeccCceeeeecc-CCCccccCcC
Q 008943 208 KWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCL 243 (548)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~ 243 (548)
..|| +|++.-.+-+.....|.|. |+...|.-=+
T Consensus 16 VkCp---~C~~~q~VFSha~t~V~C~~Cgt~L~~PTG 49 (63)
T 3j20_W 16 VKCI---DCGNEQIVFSHPATKVRCLICGATLVEPTG 49 (63)
T ss_dssp EECS---SSCCEEEEESSCSSCEECSSSCCEEEECCS
T ss_pred EECC---CCCCeeEEEecCCeEEEccCcCCEEecCCC
Confidence 4788 8998877666666679997 9999886533
No 236
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=27.50 E-value=1.4e+02 Score=20.54 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHcCCChHHHHHHHH
Q 008943 52 KEDLRRVMELLSLR-EHHARTLLIHYRWDVEKLLAVLV 88 (548)
Q Consensus 52 ~~~i~~v~~~l~i~-~~~a~~LL~~~~W~~~~l~~~~~ 88 (548)
.+.|.++.++ |++ ...++..|+...||+++.++.++
T Consensus 8 ~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 8 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4566777765 775 55678999999999999998877
No 237
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.41 E-value=21 Score=34.75 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=23.7
Q ss_pred cCCCCCCcceeecCCCCceEe-cccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 311 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~~ 311 (548)
-.||-|..++. +-++- .|||-||-.|...|
T Consensus 182 l~CPIcl~~f~-----DPVts~~CGHsFcR~cI~~~ 212 (267)
T 3htk_C 182 LTCPITCKPYE-----APLISRKCNHVFDRDGIQNY 212 (267)
T ss_dssp SBCTTTSSBCS-----SEEEESSSCCEEEHHHHHHH
T ss_pred eECcCccCccc-----CCeeeCCCCCcccHHHHHHH
Confidence 58999998885 44777 58888998888775
No 238
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=27.30 E-value=36 Score=24.96 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=14.9
Q ss_pred CcCCCCCCc-ceeecCCCCceEe-cccc
Q 008943 276 TKPCPKCHK-PVEKNGGCNLVSC-ICGQ 301 (548)
Q Consensus 276 tK~CPkC~~-~IEKn~GCnhMtC-~C~~ 301 (548)
...||.|+. .|.....=.-+.| .||.
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 357999976 5554333333666 3653
No 239
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=27.06 E-value=23 Score=34.61 Aligned_cols=24 Identities=38% Similarity=0.933 Sum_probs=17.5
Q ss_pred cCCCCCCcceee--cCCCCceEe-ccc
Q 008943 277 KPCPKCHKPVEK--NGGCNLVSC-ICG 300 (548)
Q Consensus 277 K~CPkC~~~IEK--n~GCnhMtC-~C~ 300 (548)
++||.|+.+|+| .+|=.-.+| .|+
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 799999999997 456445556 354
No 240
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=26.79 E-value=24 Score=34.35 Aligned_cols=24 Identities=25% Similarity=0.715 Sum_probs=17.2
Q ss_pred cCCCCCCcceee--cCCCCceEe-ccc
Q 008943 277 KPCPKCHKPVEK--NGGCNLVSC-ICG 300 (548)
Q Consensus 277 K~CPkC~~~IEK--n~GCnhMtC-~C~ 300 (548)
++||.|+.+|++ .+|=+-.+| .|+
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 799999999997 455444555 354
No 241
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=26.44 E-value=17 Score=23.82 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=11.2
Q ss_pred cccccccccccccc
Q 008943 114 SSTVMCDICMEEVA 127 (548)
Q Consensus 114 ~~~~~C~IC~e~~~ 127 (548)
++.|.||+|...+.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 45699999998865
No 242
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=26.32 E-value=51 Score=26.96 Aligned_cols=26 Identities=38% Similarity=0.968 Sum_probs=17.3
Q ss_pred cCCCCCCcceeecCCCCceEeccc--ccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICG--QAFCWLCGG 309 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~--~~FCw~C~~ 309 (548)
-.||.|+.++|+-.. || -.||-.|-+
T Consensus 62 a~CPdC~q~LevLkA-------CGAvdYFC~~chg 89 (101)
T 2jne_A 62 ALCPDCHQPLQVLKA-------CGAVDYFCQHGHG 89 (101)
T ss_dssp EECTTTCSBCEEEEE-------TTEEEEEETTTTE
T ss_pred ccCcchhhHHHHHHH-------hcCcchhhccCCc
Confidence 489999999995433 55 346665543
No 243
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=25.91 E-value=26 Score=34.02 Aligned_cols=24 Identities=29% Similarity=0.692 Sum_probs=17.3
Q ss_pred cCCCCCCcceee--cCCCCceEe-ccc
Q 008943 277 KPCPKCHKPVEK--NGGCNLVSC-ICG 300 (548)
Q Consensus 277 K~CPkC~~~IEK--n~GCnhMtC-~C~ 300 (548)
++||.|+.+|++ .+|=.-.+| .|+
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 689999999986 455555556 364
No 244
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=25.17 E-value=43 Score=26.41 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=26.1
Q ss_pred ccCCCCCCCCceEEeccCceeeeecc-CCCccccCcCc
Q 008943 208 KWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCLS 244 (548)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~~ 244 (548)
+-|| +|++.-.+-+.....|.|. ||...|.-=+.
T Consensus 33 VkCp---~C~n~q~VFShA~t~V~C~~Cg~~L~~PTGG 67 (81)
T 2xzm_6 33 VKCA---QCQNIQMIFSNAQSTIICEKCSAILCKPTGG 67 (81)
T ss_dssp EECS---SSCCEEEEETTCSSCEECSSSCCEEEEECSS
T ss_pred eECC---CCCCeeEEEecCccEEEccCCCCEEeecCCC
Confidence 4788 8999877766666779997 99998865443
No 245
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.66 E-value=1.5e+02 Score=22.30 Aligned_cols=38 Identities=8% Similarity=0.137 Sum_probs=32.9
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 52 KEDLRRVMELL-SLREHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 52 ~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
.+.+..+++++ +|.....+..|...+++++.-++.+..
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45666788888 899999999999999999999998874
No 246
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.28 E-value=40 Score=28.21 Aligned_cols=30 Identities=23% Similarity=0.547 Sum_probs=20.6
Q ss_pred ccccCCCCCCCCceEEeccC---ceeeeecc-CCCcc
Q 008943 206 MVKWCPSTPHCGNAIRVEEV---EVCEVECA-CGAQF 238 (548)
Q Consensus 206 ~~~~CP~~p~C~~~i~~~~~---~~~~v~C~-Cg~~f 238 (548)
.+.+|| .|++.+.+..+ ....+.|. |++.+
T Consensus 3 ~m~FCp---~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 3 NFQYCI---ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCCS---SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred cceeCc---CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 357898 79999887653 33356775 77754
No 247
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=24.18 E-value=1.1e+02 Score=29.42 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 53 EDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 53 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
+.|.++.+ .|++.+.|+..|..++|+.+..++.++.
T Consensus 217 ~~v~~l~~-mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 217 KKIENLCA-AGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34444444 3999999999999999999999988874
No 248
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.17 E-value=68 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.540 Sum_probs=21.1
Q ss_pred cccccccccccccccCceecCCCCccch
Q 008943 115 STVMCDICMEEVAGDKATKMDCGHCFCN 142 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~ 142 (548)
....|..|-..+.....+...||..||.
T Consensus 24 ~~~rC~~C~kkvgl~~~f~CrCg~~FC~ 51 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECRCGNNFCA 51 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTCCEECT
T ss_pred cCccchhhCCeecccCCeEcCCCCEecc
Confidence 4468999988765433567789999996
No 249
>1qkl_A RPB6, DNA-directed RNA polymerase II 14.4 KD polypeptide; transcription; NMR {Homo sapiens} SCOP: a.143.1.2
Probab=24.09 E-value=2.3e+02 Score=24.17 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=15.9
Q ss_pred CCCCeeeeCHHHHHHHHHHHHHHHH
Q 008943 35 KGSSTKVITRESLLAAQKEDLRRVM 59 (548)
Q Consensus 35 ~~~~~~vlt~~~l~~~~~~~i~~v~ 59 (548)
.......+|+-++....-....+++
T Consensus 50 ~r~t~p~lTRYElARIiG~RAlQLs 74 (127)
T 1qkl_A 50 KRITTPYMTKYERARVLGTRALQIA 74 (127)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHHHHHHHHHHHHh
Confidence 3455566898888776665555544
No 250
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=23.93 E-value=1.5e+02 Score=25.93 Aligned_cols=47 Identities=21% Similarity=0.538 Sum_probs=32.5
Q ss_pred ccccccccccccccCceec-CCCCccchhhHHHHHHh----hh--ccCCccceecCcccccc
Q 008943 116 TVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIV----KI--NEGQSKRIRCMAHKCNA 170 (548)
Q Consensus 116 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~----~i--~~g~~~~i~CP~~~C~~ 170 (548)
...|.||.+. .+.... .|-..||..|+..-+.. .| .+| +-.||. |..
T Consensus 63 ~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~---~W~C~~--C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENN---QWYCYI--CHP 116 (142)
T ss_dssp BCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTT---CCCCTT--TCC
T ss_pred CCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCC---CCEeec--ccC
Confidence 4689999875 344444 78999999999977642 22 334 367988 654
No 251
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=23.92 E-value=1.9e+02 Score=21.58 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHH
Q 008943 51 QKEDLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLV 88 (548)
Q Consensus 51 ~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~ 88 (548)
|...|+.-..-++..|+-||-||---+|++...+..|-
T Consensus 17 mdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~e 54 (73)
T 2l2d_A 17 MDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYE 54 (73)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhHH
Confidence 55566666678899999999999999999999888875
No 252
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.80 E-value=66 Score=25.63 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=31.4
Q ss_pred ccCCCCCCCCceEEeccCceeeeecc-CCCccccCcCccCCCCCCch
Q 008943 208 KWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEAHSPCSCS 253 (548)
Q Consensus 208 ~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~~~~H~p~~C~ 253 (548)
+-|| +|++.-.+-......|.|. |+...|.-=+..+...-.|.
T Consensus 37 VkCp---~C~~~~~VFShA~t~V~C~~CgtvL~~PTGGKa~l~egc~ 80 (86)
T 3iz6_X 37 VKCQ---GCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCS 80 (86)
T ss_dssp EECT---TTCCEEEEETTCSSCCCCSSSCCCCSCCCSSSCCCSCBCC
T ss_pred EECC---CCCCeeEEEecCCcEEEccCCCCEeecCCCCCEEecCCce
Confidence 5798 8999877666666779997 99999987666555444443
No 253
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.75 E-value=1.2e+02 Score=20.70 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
.|.++++ +|++...|+.-|+..+ |++.-++.++.
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 12 QLQQLMD-MGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHH-HHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 4556665 5899999999999997 99888887763
No 254
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.91 E-value=40 Score=31.84 Aligned_cols=32 Identities=28% Similarity=0.698 Sum_probs=23.1
Q ss_pred cCCCCCCcceeecCCCCceEec-cccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 310 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~ 310 (548)
..|+.|+...-- ---.-.|+ ||.-||..|...
T Consensus 165 ~~C~~C~~~F~~--~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGV--MTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBT--TBCCEECTTTCCEECTTTCCE
T ss_pred CCCcCcCCCCCc--cccccccCCCcCEeChhhcCC
Confidence 579999876642 11235786 999999999864
No 255
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=22.52 E-value=46 Score=28.25 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=21.6
Q ss_pred ccccCCCCCCCCceEEecc---Cceeeeecc-CCCcc
Q 008943 206 MVKWCPSTPHCGNAIRVEE---VEVCEVECA-CGAQF 238 (548)
Q Consensus 206 ~~~~CP~~p~C~~~i~~~~---~~~~~v~C~-Cg~~f 238 (548)
.+.+|| .|++.+.+.. .....+.|. |++..
T Consensus 3 ~~~FCp---~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR---DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS---SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCccc---ccCccCcccccCcCCCCEEECCcCCCee
Confidence 357898 7999988653 334567886 88765
No 256
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=22.33 E-value=34 Score=30.44 Aligned_cols=31 Identities=16% Similarity=0.505 Sum_probs=22.6
Q ss_pred ccccccccccccccc-C--ceecCCCCccchhhH
Q 008943 115 STVMCDICMEEVAGD-K--ATKMDCGHCFCNDCW 145 (548)
Q Consensus 115 ~~~~C~IC~e~~~~~-~--~~~l~CgH~fC~~C~ 145 (548)
..-.|.+|..++..- + ..-..|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 357899999986421 2 233489999999996
No 257
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.09 E-value=38 Score=26.67 Aligned_cols=35 Identities=23% Similarity=0.518 Sum_probs=24.0
Q ss_pred ccccccccccccccccC--ceecCCCCccchhhHHHH
Q 008943 114 SSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEH 148 (548)
Q Consensus 114 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~y 148 (548)
.+...|.+|...|.... ----.||..||..|....
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 34568999998875321 112379999999996554
No 258
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.99 E-value=36 Score=25.58 Aligned_cols=24 Identities=21% Similarity=0.665 Sum_probs=11.4
Q ss_pred CCCCCCcceeecCCCCceEec-cccc
Q 008943 278 PCPKCHKPVEKNGGCNLVSCI-CGQA 302 (548)
Q Consensus 278 ~CPkC~~~IEKn~GCnhMtC~-C~~~ 302 (548)
.|..|+..++-..| .-|.|+ ||+.
T Consensus 23 ~C~~Cg~~~~l~~~-~~iRC~~CG~R 47 (63)
T 3h0g_L 23 LCADCGARNTIQAK-EVIRCRECGHR 47 (63)
T ss_dssp BCSSSCCBCCCCSS-SCCCCSSSCCC
T ss_pred ECCCCCCeeecCCC-CceECCCCCcE
Confidence 55555555543322 335553 5543
No 259
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=21.75 E-value=5.4e+02 Score=24.69 Aligned_cols=128 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHH-HHHHHHHhhhHHHHH-----HHHHHHHHHHHHHhhhhhccccch--hHHHHHHHHHHHHhHhh
Q 008943 333 AKKTERAKRELYRYMH-YHNRYKAHTDSFKLE-----SKLKETVLEKVSISEERESRLRDF--SWVTNGLYRLFRSRRVL 404 (548)
Q Consensus 333 ~~~~~~~k~~l~ry~~-y~~r~~~h~~s~k~e-----~~l~~~i~~k~~~~~~~~~~~~~~--~~l~~a~~~l~~~R~~L 404 (548)
....+..+..|..|.. +..+...+...++.. .+++..+...+..+.....+..+- +-|...+..|.+
T Consensus 65 ~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L~p~~eelr~kl~~~veelk~~L~Py~eelr~k~~~~leeLr~----- 139 (273)
T 3s84_A 65 NTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRR----- 139 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHHH-----
Q ss_pred hccceeeeeccCccccccccChHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 008943 405 SYSYPFAFYMFGEELFKDEMTDEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYPDDKVMEIRMQVINLSVITDTLC 484 (548)
Q Consensus 405 ~~sy~~~yy~~~~~~~~~~~~~~e~~~~~~lfe~~Q~~lE~~~E~L~~~le~~~~~~~~~~i~~~k~~~~~l~~~~~~~~ 484 (548)
...-+.+..+..|...++.|+..|+.. ...++.++.....-+...+
T Consensus 140 --------------------------~l~P~ae~~~~kl~~~~e~L~~ql~~~--------a~~L~~~l~~~~eeLr~~L 185 (273)
T 3s84_A 140 --------------------------SLAPYAQDTQEKLNHQLEGLTFQMKKN--------AEELKARISASAEELRQRL 185 (273)
T ss_dssp --------------------------HHGGGCSSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------HhhhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhh
Q 008943 485 KKMYECIENDLLGCL 499 (548)
Q Consensus 485 ~~l~~~~e~~l~~~~ 499 (548)
.-..+.+...|.+.+
T Consensus 186 ~p~ae~lr~~l~~~~ 200 (273)
T 3s84_A 186 APLAEDVRGNLRGNT 200 (273)
T ss_dssp HHHHHHHHHTSSSCH
T ss_pred HHHHHHHHHHHHHHH
No 260
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=21.26 E-value=41 Score=25.69 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=22.5
Q ss_pred cccccccccccccC--ceecCCCCccchhhHHHH
Q 008943 117 VMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEH 148 (548)
Q Consensus 117 ~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~y 148 (548)
..|.+|...|.... ----.||..||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 37999998875321 112379999999997654
No 261
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=21.10 E-value=57 Score=30.28 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCchhhhhhhCC-cccCCCCCCCCcccccccccccccccccCceecCCCCccchhhHHH
Q 008943 81 EKLLAVLVENGKESLFNEAGV-TVIDDADPMLPLSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTE 147 (548)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~gl-~~~~~~~~~~~~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~ 147 (548)
+.+++.+...+.+.+|.-..+ ....+ ...+......|++|-|.+......... |-..|..|...
T Consensus 138 ~~~~~~il~~~~eelf~v~~v~~~~~p--~~~~~~~~~~C~~CGE~~~~~~~~~~~-g~~~C~~C~~~ 202 (204)
T 2gvi_A 138 DPVLEWISSLEDEEIFEYREIDGFTFE--PVKKNGAKVRCDVCGEYTYEADAKLLN-GKPVCKPDYYG 202 (204)
T ss_dssp HHHHHHHHHSCHHHHEEEEEESSCCCC--CCCCCCCEEECTTTCCEEEGGGCEEET-TEEECHHHHHC
T ss_pred HHHHHHHHhCChhHeEEEEEeeccCCC--CCCCCCCceECCCCCCchhhcceeeeC-CcEEChhhhcc
Confidence 445555665555677754433 22211 111223468899999998644433333 77899999753
No 262
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=20.99 E-value=1.3e+02 Score=25.25 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCChHHHHHHHHh
Q 008943 54 DLRRVMELLSLREHHARTLLIHYRWDVEKLLAVLVE 89 (548)
Q Consensus 54 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 89 (548)
.|.++++ +|.+...|+..|+..+||++.-.+.++.
T Consensus 81 ~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 81 IVAIITS-MGFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp HHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4566666 5999999999999999999999988885
No 263
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=20.26 E-value=38 Score=27.77 Aligned_cols=17 Identities=18% Similarity=0.626 Sum_probs=14.0
Q ss_pred ccchhhHHHHHHhhhcc
Q 008943 139 CFCNDCWTEHFIVKINE 155 (548)
Q Consensus 139 ~fC~~C~~~yl~~~i~~ 155 (548)
-||++|+..|+...-.+
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 39999999999887643
No 264
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=20.03 E-value=45 Score=24.68 Aligned_cols=35 Identities=34% Similarity=0.795 Sum_probs=26.6
Q ss_pred cCCCCCCcceeecCCCCceEeccccccccccccccc
Q 008943 277 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 312 (548)
Q Consensus 277 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 312 (548)
-.|+.|.+.-- .+||-|.---|+..||-.||+.+.
T Consensus 10 ~~C~iC~KTKF-ADG~Gh~C~yCk~r~CaRCGg~v~ 44 (62)
T 2a20_A 10 PTCGICHKTKF-ADGCGHNCSYCQTKFCARCGGRVS 44 (62)
T ss_dssp CCCSSSSCSCC-CSSCCEEBTTTCCEECTTSEEEEE
T ss_pred chhhhhcccee-ccCCCccccccCCeeecccCCEee
Confidence 57888876532 678888533699999999999754
Done!