BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008944
         (548 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AZN|A Chain A, X-Ray Structure Of
           2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
           Phosphate Reductase
 pdb|2AZN|B Chain B, X-Ray Structure Of
           2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
           Phosphate Reductase
 pdb|2AZN|C Chain C, X-Ray Structure Of
           2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
           Phosphate Reductase
 pdb|2AZN|D Chain D, X-Ray Structure Of
           2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
           Phosphate Reductase
 pdb|2AZN|E Chain E, X-Ray Structure Of
           2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
           Phosphate Reductase
 pdb|2AZN|F Chain F, X-Ray Structure Of
           2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
           Phosphate Reductase
          Length = 219

 Score = 36.6 bits (83), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 29/129 (22%)

Query: 319 VGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAER 378
           VG  ++G LA I +D  ++    +     I    R   DG+   I + LK+ P LT    
Sbjct: 10  VGXTLDGKLATINNDSRISCEEDLIRVHKI----RANVDGIXVGIGTVLKDDPRLT---- 61

Query: 379 KKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQVRAASEVHALRNNPQNASHST 438
                            VH  ++DR P+R+VV      ++R       L  + +    +T
Sbjct: 62  -----------------VHKIKSDRNPVRIVVD----SKLRVPLNARVLNKDAKTIIATT 100

Query: 439 TNTDEEWEK 447
            +T+EE EK
Sbjct: 101 EDTNEEKEK 109


>pdb|1QD1|A Chain A, The Crystal Structure Of The Formiminotransferase Domain
           Of Formiminotransferase-Cyclodeaminase.
 pdb|1QD1|B Chain B, The Crystal Structure Of The Formiminotransferase Domain
           Of Formiminotransferase-Cyclodeaminase
          Length = 325

 Score = 32.7 bits (73), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 335 NLTLASFIDLSQSIPESARPIHDGLYKAID--SYLKEHPDLTKAERKKICGLMDVRKLTM 392
           N T+ +F+   + + E A       Y+ ID   +  EHP +   +   +C  + VR +TM
Sbjct: 44  NRTVYTFVGRPEDVVEGALNAARAAYQLIDMSRHHGEHPRMGALD---VCPFIPVRGVTM 100

Query: 393 DASVHAAQ--NDRLPLRVVVQV-LFFEQVRAAS 422
           D  V  AQ    RL   + V V L+ E  R A 
Sbjct: 101 DECVRCAQAFGQRLAEELGVPVYLYGEAARTAG 133


>pdb|3M3M|A Chain A, Crystal Structure Of Glutathione S-Transferase From
           Pseudomonas Fluorescens [pf-5]
          Length = 210

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 326 YLAEIAHDPNLTLASFIDLSQSIPESAR----PIHDGLYKAID 364
           +  + +H+P + +A FI L + +PE  R     +H   YKA+D
Sbjct: 98  FFEQYSHEPYIAVARFIQLYEGLPEERREEYLKLHKRGYKALD 140


>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
           Complex With Adp
 pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
           Complex With Adp
          Length = 357

 Score = 30.4 bits (67), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 239 DNSAREDLVKRISLKLHEASV-KDLLIPARSSQTACYDVELVQCIVNE 285
           D +AR  LVKR+ + L EAS  K ++I   S +  C   E ++ IV +
Sbjct: 235 DEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQ 282


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,352,330
Number of Sequences: 62578
Number of extensions: 535172
Number of successful extensions: 1219
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1219
Number of HSP's gapped (non-prelim): 4
length of query: 548
length of database: 14,973,337
effective HSP length: 104
effective length of query: 444
effective length of database: 8,465,225
effective search space: 3758559900
effective search space used: 3758559900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)