Query 008944
Match_columns 548
No_of_seqs 196 out of 387
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 18:29:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 3E-91 6.5E-96 700.1 21.7 249 141-395 1-258 (258)
2 PF00651 BTB: BTB/POZ domain; 96.4 0.0033 7.2E-08 53.9 3.6 54 3-64 56-110 (111)
3 smart00225 BTB Broad-Complex, 96.2 0.0039 8.4E-08 50.0 2.8 41 6-46 43-84 (90)
4 PHA03098 kelch-like protein; P 95.9 0.033 7.2E-07 61.3 9.6 82 7-103 53-137 (534)
5 PHA02790 Kelch-like protein; P 89.8 0.32 6.9E-06 53.6 4.0 66 9-89 70-135 (480)
6 KOG4441 Proteins containing BT 89.2 2.4 5.2E-05 48.2 10.5 176 1-248 78-258 (571)
7 PHA02713 hypothetical protein; 88.1 0.55 1.2E-05 52.9 4.4 63 2-76 70-132 (557)
8 PF11822 DUF3342: Domain of un 81.3 0.72 1.6E-05 48.9 1.3 47 10-62 55-101 (317)
9 PF14363 AAA_assoc: Domain ass 55.6 7.2 0.00016 34.2 1.7 42 348-390 30-71 (98)
10 PF15658 Latrotoxin_C: Latroto 40.3 41 0.0009 31.5 4.2 35 151-188 65-102 (127)
11 PF10929 DUF2811: Protein of u 34.7 28 0.00061 28.4 1.9 19 357-375 8-26 (57)
12 smart00512 Skp1 Found in Skp1 32.2 55 0.0012 28.5 3.6 35 10-44 51-104 (104)
13 COG3510 CmcI Cephalosporin hyd 32.2 23 0.00051 35.8 1.3 35 345-379 183-219 (237)
14 PF10932 DUF2783: Protein of u 32.2 38 0.00082 27.9 2.3 28 349-381 5-32 (60)
15 PHA00617 ribbon-helix-helix do 29.4 68 0.0015 27.8 3.5 37 149-185 44-80 (80)
16 KOG2075 Topoisomerase TOP1-int 28.0 1.8E+02 0.004 33.0 7.3 84 9-103 167-250 (521)
17 PF07707 BACK: BTB And C-termi 26.5 50 0.0011 27.7 2.2 76 318-394 19-97 (103)
18 PF11123 DNA_Packaging_2: DNA 25.9 45 0.00097 28.8 1.8 16 357-372 31-46 (82)
19 KOG2016 NEDD8-activating compl 24.4 83 0.0018 35.4 3.9 102 273-375 292-434 (523)
20 cd00056 ENDO3c endonuclease II 21.6 1.1E+02 0.0024 28.2 3.7 42 3-46 85-127 (158)
21 PF01402 RHH_1: Ribbon-helix-h 21.5 1.2E+02 0.0025 21.6 3.0 35 150-184 5-39 (39)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=3e-91 Score=700.06 Aligned_cols=249 Identities=47% Similarity=0.817 Sum_probs=222.9
Q ss_pred CCchhhhhcccChhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHcCCccc--------ccccchhhhhhHHHHHHHHhh
Q 008944 141 KDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSID--------ALVSDAQTLRNKCLVETIVCL 212 (548)
Q Consensus 141 ~dWW~eDL~~L~idl~~rvi~amks~g~~~~~~I~~~L~~Ya~r~Lp~~~~--------~~~~~~~~~~~r~llEtiV~L 212 (548)
+|||||||+.|++|+|+|||.+|+++| |++++||++|++||+||||+... .........+||.+||+||+|
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~-~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~l 79 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKG-MKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSL 79 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHh
Confidence 589999999999999999999999997 99999999999999999999721 112234567899999999999
Q ss_pred cCCCCCCccchhHHHHHHHHhhhcCCCHHHHHHHHHHHhccccccCccccccccC-CCCCccccHHHHHHHHHHHHcccC
Q 008944 213 LPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPAR-SSQTACYDVELVQCIVNEYLMHEK 291 (548)
Q Consensus 213 LP~ek~s~vsc~FL~~LLR~A~~l~as~~cr~~Le~RIg~qLd~AtldDLLIPs~-~~~~tlYDVd~V~ril~~Fl~~~~ 291 (548)
||.++++ +||+|||+|||+|+++++++.||.+||+|||.|||||||+|||||+. +..+|+||||+|+|||++||.+++
T Consensus 80 LP~e~~s-vsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~ 158 (258)
T PF03000_consen 80 LPPEKGS-VSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEE 158 (258)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhccc
Confidence 9999988 99999999999999999999999999999999999999999999993 334599999999999999999865
Q ss_pred CCcccCCCCCCCCCCCCcccCchhHHHHHhhhhhhhhhhcCCCCCChhHHHHHHhhcCCCCcccchhhHHHHHHHHhhCC
Q 008944 292 PSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHP 371 (548)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEIA~D~nL~~sKF~~LAe~lPd~AR~~hDgLYRAIDiYLKaHP 371 (548)
... ....+........+..++.+||||||+||+|||+||||+|+||++|||+||++||++|||||||||||||+||
T Consensus 159 ~~~----~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp 234 (258)
T PF03000_consen 159 EAG----EEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP 234 (258)
T ss_pred ccc----cccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc
Confidence 322 0111111223345678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhhhhcccccCCCCHHHh
Q 008944 372 DLTKAERKKICGLMDVRKLTMDAS 395 (548)
Q Consensus 372 ~Lse~Er~~lCr~mdc~KLS~EAc 395 (548)
+||++||++||++|||||||+|||
T Consensus 235 ~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 235 GLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred cCCHHHHHHHHhhCCcccCCcccC
Confidence 999999999999999999999999
No 2
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=96.37 E-value=0.0033 Score=53.85 Aligned_cols=54 Identities=30% Similarity=0.377 Sum_probs=48.4
Q ss_pred cCCCCCChHHHHHHHHhhcCcccccc-chhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhc
Q 008944 3 IVDFPGGPKAFEICAKFCYGMTVTFS-AYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSS 64 (548)
Q Consensus 3 l~dfPGG~eaFEl~AkFCYG~~v~lt-~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~ 64 (548)
+.+++ +++|+...+|||+.++.++ ..|+..+...|.+++|.+ |...++.||.+.
T Consensus 56 ~~~~~--~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 56 LPDVS--PEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp ETTSC--HHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred ccccc--ccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 45555 8899999999999999998 999999999999999986 999999999763
No 3
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=96.18 E-value=0.0039 Score=49.97 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=37.8
Q ss_pred CCC-ChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCc
Q 008944 6 FPG-GPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTE 46 (548)
Q Consensus 6 fPG-G~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE 46 (548)
+|+ .+++|+..-+|||+.++.+++.|+..+.++|+|++|.+
T Consensus 43 l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~ 84 (90)
T smart00225 43 LDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPG 84 (90)
T ss_pred ecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHH
Confidence 344 78999999999999999999999999999999999976
No 4
>PHA03098 kelch-like protein; Provisional
Probab=95.93 E-value=0.033 Score=61.27 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=63.1
Q ss_pred CCChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhcccCChHHHHHHHhhccccccch
Q 008944 7 PGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWS 86 (548)
Q Consensus 7 PGG~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~vl~sW~dsi~vLqsce~llp~a 86 (548)
++-+++|+...+|-|..+++|+..||..|--||.+|+|.+ |....+.||.+.+ +-..++ .++..|
T Consensus 53 ~~~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~------l~~~C~~~l~~~l--~~~nc~-------~~~~~a 117 (534)
T PHA03098 53 NIDYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDF------LINLCINYIIKII--DDNNCI-------DIYRFS 117 (534)
T ss_pred cCCHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHhC--CHhHHH-------HHHHHH
Confidence 3378999999999999999999999999999999999987 9999999998754 233344 444444
Q ss_pred hhh---chHHHHHHHHHHhh
Q 008944 87 EDL---KIIGRSVDSIASKT 103 (548)
Q Consensus 87 E~l---~Iv~RCidsiA~ka 103 (548)
+.. .+.+.|.+-|+...
T Consensus 118 ~~~~~~~L~~~~~~~i~~nf 137 (534)
T PHA03098 118 FFYGCKKLYSAAYNYIRNNI 137 (534)
T ss_pred HHcCcHHHHHHHHHHHHHHH
Confidence 433 35567777666554
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=89.76 E-value=0.32 Score=53.62 Aligned_cols=66 Identities=12% Similarity=0.078 Sum_probs=54.8
Q ss_pred ChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhcccCChHHHHHHHhhccccccchhh
Q 008944 9 GPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSED 88 (548)
Q Consensus 9 G~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~vl~sW~dsi~vLqsce~llp~aE~ 88 (548)
.+++|+....|-|..+++||..||-.+-.||.||+|++ ++.....||.+.+-. ..|=.+...|+.
T Consensus 70 ~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l~~---------~NCl~i~~~A~~ 134 (480)
T PHA02790 70 DIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEF------IIYTCINFILRDFRK---------EYCVECYMMGIE 134 (480)
T ss_pred CHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHH------HHHHHHHHHHhhCCc---------chHHHHHHHHHH
Confidence 47899999999999999999999999999999999986 888999999876633 234444555555
Q ss_pred h
Q 008944 89 L 89 (548)
Q Consensus 89 l 89 (548)
.
T Consensus 135 y 135 (480)
T PHA02790 135 Y 135 (480)
T ss_pred h
Confidence 4
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=89.22 E-value=2.4 Score=48.22 Aligned_cols=176 Identities=20% Similarity=0.243 Sum_probs=104.9
Q ss_pred CccCCCCCChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhcccCChHHHHH-----H
Q 008944 1 MNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSII-----V 75 (548)
Q Consensus 1 I~l~dfPGG~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~vl~sW~dsi~-----v 75 (548)
|+|.+ --++++++...|+|..+++|+-.||--|-=||.+|+|++ +..-.-.||.+.+.. ..++. -
T Consensus 78 i~l~~--v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~------v~~~C~~fL~~~l~~--~Nclgi~~~a~ 147 (571)
T KOG4441|consen 78 INLEG--VDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPE------VVDACCEFLESQLDP--SNCLGIRRFAE 147 (571)
T ss_pred EEEec--CCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHH------HHHHHHHHHHhcCCH--HHHHHHHHHHH
Confidence 34555 458999999999999999999999999999999999997 666677788765432 11111 1
Q ss_pred HhhccccccchhhhchHHHHHHHHHHhhcCCCCCcccccccCCCCCCCccccccCccccccccCCCCchhhhhcccChhH
Q 008944 76 LQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDL 155 (548)
Q Consensus 76 Lqsce~llp~aE~l~Iv~RCidsiA~ka~~dp~~~~ws~t~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~eDL~~L~idl 155 (548)
+++|..|...|.+. |.++ ...=|=-||-..|+.+.
T Consensus 148 ~~~~~~L~~~a~~~-i~~~--------------------------------------------F~~v~~~eefl~L~~~~ 182 (571)
T KOG4441|consen 148 LHSCTELLEVADEY-ILQH--------------------------------------------FAEVSKTEEFLLLSLEE 182 (571)
T ss_pred hcCcHHHHHHHHHH-HHHH--------------------------------------------HHHHhccHHhhCCCHHH
Confidence 12233332222210 0000 01112345656688777
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHHHcCCcccccccchhhhhhHHHHHHHHhhcCCCCCCccchhHHHHHHHHhhh
Q 008944 156 YKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVL 235 (548)
Q Consensus 156 ~~rvi~amks~g~~~~~~I~~~L~~Ya~r~Lp~~~~~~~~~~~~~~~r~llEtiV~LLP~ek~s~vsc~FL~~LLR~A~~ 235 (548)
+..+|..-.-.. -+++.+.+ .+-+|+.. +. ..++..+. .+|..-+-.-++-.||.+.....-.
T Consensus 183 l~~ll~~d~l~v-~~E~~vf~----a~~~Wv~~-------d~-~~R~~~~~----~ll~~vr~~ll~~~~l~~~v~~~~~ 245 (571)
T KOG4441|consen 183 LIGLLSSDDLNV-DSEEEVFE----AAMRWVKH-------DF-EEREEHLP----ALLEAVRLPLLPPQFLVEIVESEPL 245 (571)
T ss_pred HHhhccccCCCc-CCHHHHHH----HHHHHHhc-------CH-hhHHHHHH----HHHHhcCccCCCHHHHHHHHhhhhh
Confidence 777665553331 22334444 44556542 11 11111211 2222222123788999999999999
Q ss_pred cCCCHHHHHHHHH
Q 008944 236 VGVDNSAREDLVK 248 (548)
Q Consensus 236 l~as~~cr~~Le~ 248 (548)
+..+..||.-|..
T Consensus 246 ~~~~~~c~~~l~e 258 (571)
T KOG4441|consen 246 IKRDSACRDLLDE 258 (571)
T ss_pred hccCHHHHHHHHH
Confidence 9999999998764
No 7
>PHA02713 hypothetical protein; Provisional
Probab=88.06 E-value=0.55 Score=52.95 Aligned_cols=63 Identities=21% Similarity=0.348 Sum_probs=50.3
Q ss_pred ccCCCCCChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhcccCChHHHHHHH
Q 008944 2 NIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVL 76 (548)
Q Consensus 2 ~l~dfPGG~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~vl~sW~dsi~vL 76 (548)
+|.++ -+++|+.+.+|.|..+ |++.||-.+--||.||+|++ |....+.||.+.+-. ..++.++
T Consensus 70 ~l~~v--~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l~~--~NCl~i~ 132 (557)
T PHA02713 70 NLQMF--DKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDD------LVTDCESYIKDYTNH--DTCIYMY 132 (557)
T ss_pred EeccC--CHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHH------HHHHHHHHHHhhCCc--cchHHHH
Confidence 45554 4799999999999876 78999999999999999987 888999999775532 2444443
No 8
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=81.29 E-value=0.72 Score=48.88 Aligned_cols=47 Identities=21% Similarity=0.346 Sum_probs=41.8
Q ss_pred hHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhh
Q 008944 10 PKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLN 62 (548)
Q Consensus 10 ~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~ 62 (548)
-..||.-.++++|-...|||.|||.+-=-++||+|++ |++.+=.|..
T Consensus 55 v~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~------Lve~cl~y~~ 101 (317)
T PF11822_consen 55 VHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES------LVEECLQYCH 101 (317)
T ss_pred hhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH------HHHHHHHHHH
Confidence 3689999999999999999999999999999999987 7777777764
No 9
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=55.65 E-value=7.2 Score=34.25 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=32.8
Q ss_pred cCCCCcccchhhHHHHHHHHhhCCCCCHHHHhhhhcccccCCC
Q 008944 348 IPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKL 390 (548)
Q Consensus 348 lPd~AR~~hDgLYRAIDiYLKaHP~Lse~Er~~lCr~mdc~KL 390 (548)
+|++..-....||+|+..||.+....+- .|-++++.-|-+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 4555557788999999999999987665 77888887776654
No 10
>PF15658 Latrotoxin_C: Latrotoxin C-terminal domain
Probab=40.29 E-value=41 Score=31.49 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=28.4
Q ss_pred cChhH---HHHHHHHHHhcCCCCchhHHHHHHHHHHHHcCC
Q 008944 151 LDIDL---YKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPD 188 (548)
Q Consensus 151 L~idl---~~rvi~amks~g~~~~~~I~~~L~~Ya~r~Lp~ 188 (548)
|++|+ .++++.++.+ |+ ..-|...|..||++.+|+
T Consensus 65 lniD~~evqs~I~~kI~s-G~--~neIs~~L~Sy~e~a~p~ 102 (127)
T PF15658_consen 65 LNIDFVEVQSKITKKIMS-GK--FNEISKILCSYAEKACPG 102 (127)
T ss_pred ccCCHHHHHHHHHHHHHc-CC--chHHHHHHHHHHHHhCcc
Confidence 55554 5678888877 44 778999999999999997
No 11
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=34.73 E-value=28 Score=28.36 Aligned_cols=19 Identities=21% Similarity=0.660 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHhhCCCCCH
Q 008944 357 DGLYKAIDSYLKEHPDLTK 375 (548)
Q Consensus 357 DgLYRAIDiYLKaHP~Lse 375 (548)
-.||.|+.-||+.||+-..
T Consensus 8 e~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHHcCCCchH
Confidence 4699999999999998654
No 12
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=32.22 E-value=55 Score=28.54 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=23.5
Q ss_pred hHHHHHHHHhhcCcc-------------------ccccchhHHHHHhhhhhhcC
Q 008944 10 PKAFEICAKFCYGMT-------------------VTFSAYNVVAARCAAEYLEM 44 (548)
Q Consensus 10 ~eaFEl~AkFCYG~~-------------------v~lt~~NVv~lRCAAeyLeM 44 (548)
+.+++++.+||+--. +.+...++.-|-.||.||++
T Consensus 51 ~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 51 SKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 588999999998211 01455567777777777764
No 13
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=32.20 E-value=23 Score=35.76 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=26.5
Q ss_pred HhhcC--CCCcccchhhHHHHHHHHhhCCCCCHHHHh
Q 008944 345 SQSIP--ESARPIHDGLYKAIDSYLKEHPDLTKAERK 379 (548)
Q Consensus 345 Ae~lP--d~AR~~hDgLYRAIDiYLKaHP~Lse~Er~ 379 (548)
.+-+| +..+..-+|=|+||..|||.||+==|.++.
T Consensus 183 v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~ 219 (237)
T COG3510 183 VNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTS 219 (237)
T ss_pred ccCCCCcccchhcCCChHHHHHHHHHhCCcccccchh
Confidence 34566 666667999999999999999965555443
No 14
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=32.18 E-value=38 Score=27.92 Aligned_cols=28 Identities=29% Similarity=0.665 Sum_probs=21.3
Q ss_pred CCCCcccchhhHHHHHHHHhhCCCCCHHHHhhh
Q 008944 349 PESARPIHDGLYKAIDSYLKEHPDLTKAERKKI 381 (548)
Q Consensus 349 Pd~AR~~hDgLYRAIDiYLKaHP~Lse~Er~~l 381 (548)
|..++| |+.|.|+ +.+|.+||++|-..+
T Consensus 5 pnl~~p--D~fY~~L---i~aH~gLs~e~S~~l 32 (60)
T PF10932_consen 5 PNLADP--DDFYEAL---IEAHRGLSDEQSAAL 32 (60)
T ss_pred CCCCCh--hHHHHHH---HHHHhCCCHHHHHHH
Confidence 444444 9999885 899999999986543
No 15
>PHA00617 ribbon-helix-helix domain containing protein
Probab=29.39 E-value=68 Score=27.81 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=33.2
Q ss_pred cccChhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHH
Q 008944 149 CELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRW 185 (548)
Q Consensus 149 ~~L~idl~~rvi~amks~g~~~~~~I~~~L~~Ya~r~ 185 (548)
..||.++.+++-.-.+..|+-.+++|-++|..|...|
T Consensus 44 VrLp~eL~erLD~LA~~~GrsRSelIreAI~~YLee~ 80 (80)
T PHA00617 44 FKLPPELNAKLEQVAIKMKKSKSEIIREALEKYLEEV 80 (80)
T ss_pred EECCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhC
Confidence 5699999999999999988778999999999998876
No 16
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=27.99 E-value=1.8e+02 Score=33.03 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=61.8
Q ss_pred ChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhcccCChHHHHHHHhhccccccchhh
Q 008944 9 GPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSED 88 (548)
Q Consensus 9 G~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~vl~sW~dsi~vLqsce~llp~aE~ 88 (548)
-|.||+---||-|+-.+.+.+.||..+.=||. .|-.+-|....-+||....+. +....-|-+|-.| .++
T Consensus 167 epaaFl~~L~flYsdev~~~~dtvi~tl~~Ak------KY~VpaLer~CVkflr~~l~~--~naf~~L~q~A~l---f~e 235 (521)
T KOG2075|consen 167 EPAAFLAFLRFLYSDEVKLAADTVITTLYAAK------KYLVPALERQCVKFLRKNLMA--DNAFLELFQRAKL---FDE 235 (521)
T ss_pred ChhHhHHHHHHHhcchhhhhHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHh---hcC
Confidence 58999999999999999999999998877764 344556778888888876543 3444445555333 356
Q ss_pred hchHHHHHHHHHHhh
Q 008944 89 LKIIGRSVDSIASKT 103 (548)
Q Consensus 89 l~Iv~RCidsiA~ka 103 (548)
=.+.++|++.|.-.+
T Consensus 236 p~Li~~c~e~id~~~ 250 (521)
T KOG2075|consen 236 PSLISICLEVIDKSF 250 (521)
T ss_pred HHHHHHHHHHhhhHH
Confidence 678999999886544
No 17
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=26.52 E-value=50 Score=27.69 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=50.4
Q ss_pred HHHhhhhhhhhhhcCCC---CCChhHHHHHHhhcCCCCcccchhhHHHHHHHHhhCCCCCHHHHhhhhcccccCCCCHHH
Q 008944 318 AVGKLINGYLAEIAHDP---NLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDA 394 (548)
Q Consensus 318 ~VakLvD~YLaEIA~D~---nL~~sKF~~LAe~lPd~AR~~hDgLYRAIDiYLKaHP~Lse~Er~~lCr~mdc~KLS~EA 394 (548)
++-+.|.....+|..++ +|++..+..+-.. ++-.....|.+|.||-.|++.+|.-.+..-.+|.+.+...-||++-
T Consensus 19 ~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~-~~l~v~~E~~v~~av~~W~~~~~~~r~~~~~~Ll~~iR~~~l~~~~ 97 (103)
T PF07707_consen 19 ACLRFIAKNFNEVSKSDEFLELPFDQLIEILSS-DDLNVSSEDDVFEAVLRWLKHNPENREEHLKELLSCIRFPLLSPEE 97 (103)
T ss_dssp HHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHT-SS--ECTCCCHHHHHHHHHHCTHHHHTTTHHHHHCCCHHHCT-HHH
T ss_pred HHHHHHHHHHHHHccchhhhcCCHHHHHHHHhc-cccccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCcccCCHHH
Confidence 34444555555676555 6888888888775 5555667899999999999999865555556666666666666653
No 18
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=25.92 E-value=45 Score=28.81 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHhhCCC
Q 008944 357 DGLYKAIDSYLKEHPD 372 (548)
Q Consensus 357 DgLYRAIDiYLKaHP~ 372 (548)
=.||-||+-||..|-.
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 4799999999999963
No 19
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=24.35 E-value=83 Score=35.43 Aligned_cols=102 Identities=17% Similarity=0.279 Sum_probs=62.5
Q ss_pred cccHHHHHHHHHHHHcccCCCc---ccCCCCCCCCCCCCcc-c-------CchhHHHHHhhhhhhhhhhcCCC-------
Q 008944 273 CYDVELVQCIVNEYLMHEKPSR---ALGDVGWNEKGPDDFV-L-------GHGSLLAVGKLINGYLAEIAHDP------- 334 (548)
Q Consensus 273 lYDVd~V~ril~~Fl~~~~~~~---~~~~~~~~~~~~~~~~-~-------~~~~l~~VakLvD~YLaEIA~D~------- 334 (548)
.-|--.+.+.+++|+.++.... .|...+... ....+. + .......|.+.+-.+|.+++.+|
T Consensus 292 s~~FWim~~aLk~Fv~~e~~g~lPL~GtlPDM~s-sTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ 370 (523)
T KOG2016|consen 292 SSDFWIMAAALKEFVLKEEGGFLPLRGTLPDMTS-STEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDV 370 (523)
T ss_pred CcHHHHHHHHHHHHHcccCCCccCCCCCCCcccc-CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHH
Confidence 3467788899999998753221 111100000 000000 0 12356789999999999999885
Q ss_pred ---------CCChhHHHHHHhhcCCCCc----ccch-h---------hHHHHHHHHhhCCCCCH
Q 008944 335 ---------NLTLASFIDLSQSIPESAR----PIHD-G---------LYKAIDSYLKEHPDLTK 375 (548)
Q Consensus 335 ---------nL~~sKF~~LAe~lPd~AR----~~hD-g---------LYRAIDiYLKaHP~Lse 375 (548)
+|++-.|..|+|-.-++.+ ...| . +|||+|.||+.|-....
T Consensus 371 ik~fCkna~~lkv~r~~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG 434 (523)
T KOG2016|consen 371 IKLFCKNAAKLKVCRGRTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPG 434 (523)
T ss_pred HHHHHhhhhcceeeecchhhhhhcccchhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCC
Confidence 4666667778776654444 3333 3 69999999999976554
No 20
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=21.60 E-value=1.1e+02 Score=28.23 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=34.7
Q ss_pred cCCCCC-ChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCc
Q 008944 3 IVDFPG-GPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTE 46 (548)
Q Consensus 3 l~dfPG-G~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE 46 (548)
|..||| |+++=+.+.-||+| .+.=|..+...|-+..+..+.+
T Consensus 85 L~~l~GIG~~tA~~~l~~~~~--~~~~pvD~~v~r~~~~~~~~~~ 127 (158)
T cd00056 85 LLALPGVGRKTANVVLLFALG--PDAFPVDTHVRRVLKRLGLIPK 127 (158)
T ss_pred HHcCCCCCHHHHHHHHHHHCC--CCCCccchhHHHHHHHhCCCCC
Confidence 456888 99999999999999 4455559999999999988744
No 21
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=21.47 E-value=1.2e+02 Score=21.63 Aligned_cols=35 Identities=37% Similarity=0.494 Sum_probs=27.8
Q ss_pred ccChhHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 008944 150 ELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVR 184 (548)
Q Consensus 150 ~L~idl~~rvi~amks~g~~~~~~I~~~L~~Ya~r 184 (548)
.||.++++++=.-.+..|.-..++|-.+|..|..+
T Consensus 5 ~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 5 RLPDELYERLDELAKELGRSRSELIREAIREYLER 39 (39)
T ss_dssp EEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 46778888887777888866678899999988764
Done!