Query 008944
Match_columns 548
No_of_seqs 196 out of 387
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 15:15:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i3n_A Kelch-like protein 11; 98.0 1.1E-05 3.9E-10 79.6 8.2 171 8-248 88-263 (279)
2 1buo_A POZ domain, protein (pr 97.5 7.3E-05 2.5E-09 65.0 4.2 57 1-65 65-121 (121)
3 3b84_A Zinc finger and BTB dom 97.4 5.6E-05 1.9E-09 65.7 2.2 56 1-64 62-117 (119)
4 2vkp_A BTB/POZ domain-containi 97.4 0.00011 3.8E-09 62.1 3.9 50 9-64 59-108 (109)
5 2yy9_A Zinc finger and BTB dom 97.3 6.6E-05 2.3E-09 66.8 2.2 57 1-65 63-119 (135)
6 3m5b_A Zinc finger and BTB dom 97.3 0.00022 7.6E-09 62.5 5.0 55 1-63 63-117 (119)
7 2vpk_A Myoneurin; transcriptio 97.2 0.00021 7.2E-09 61.4 4.0 48 9-62 68-115 (116)
8 2q81_A MIZ-1 protein; BTB/POZ 97.2 0.00023 7.9E-09 61.7 4.1 48 9-62 70-117 (119)
9 2if5_A Zinc finger and BTB dom 97.2 0.00027 9.1E-09 61.0 4.2 48 9-62 73-120 (120)
10 2ppi_A Gigaxonin; BTB domain, 97.1 0.00029 9.8E-09 63.5 3.8 52 2-61 92-143 (144)
11 3ga1_A Nucleus accumbens-assoc 97.1 0.00014 4.8E-09 63.9 1.6 49 9-63 78-126 (129)
12 2z8h_A Transcription regulator 97.1 0.00045 1.6E-08 61.4 4.9 52 9-66 83-134 (138)
13 3htm_A Speckle-type POZ protei 97.0 0.00061 2.1E-08 61.7 5.5 88 2-103 77-164 (172)
14 3hve_A Gigaxonin; ubiquitin, c 97.0 0.00067 2.3E-08 65.9 5.6 175 2-248 76-256 (256)
15 4eoz_A Speckle-type POZ protei 97.0 0.00028 9.6E-09 62.2 2.6 71 2-89 68-138 (145)
16 1r29_A B-cell lymphoma 6 prote 97.0 0.00048 1.7E-08 60.0 4.1 49 9-63 77-125 (127)
17 3ohu_A Transcription regulator 96.4 0.0021 7.3E-08 55.7 4.0 41 6-46 74-116 (125)
18 3fkc_A Transcriptional regulat 96.4 0.0016 5.5E-08 56.4 3.2 44 1-46 68-112 (116)
19 3hqi_A Speckle-type POZ protei 96.2 0.0034 1.2E-07 62.6 4.7 86 1-103 216-304 (312)
20 2ihc_A Transcription regulator 96.0 0.0014 4.9E-08 57.1 0.8 47 9-61 76-122 (124)
21 4ajy_C Transcription elongatio 85.4 0.66 2.3E-05 39.0 3.8 35 9-43 51-96 (97)
22 2ast_A S-phase kinase-associat 78.2 1.5 5.1E-05 40.0 3.6 50 10-65 51-126 (159)
23 2p1m_A SKP1-like protein 1A; F 67.8 2.7 9.1E-05 38.5 2.6 56 2-65 43-125 (160)
24 1vjh_A BET V I allergen family 56.1 8.3 0.00028 33.6 3.5 33 329-372 90-122 (122)
25 1fs1_B SKP1, cyclin A/CDK2-ass 51.4 9.5 0.00033 34.0 3.2 55 3-65 41-121 (141)
26 3b0b_C CENP-X, centromere prot 38.2 25 0.00085 29.2 3.5 44 271-331 6-49 (81)
27 4dra_E Centromere protein X; D 29.4 30 0.001 29.0 2.6 44 271-331 10-53 (84)
28 1pd7_B MAD1; PAH2, SIN3, eukar 26.1 21 0.00071 23.8 0.8 17 30-46 3-19 (26)
29 3v7d_A Suppressor of kinetocho 22.1 52 0.0018 30.3 3.0 37 10-46 59-120 (169)
30 2kel_A SVTR protein, uncharact 20.9 78 0.0027 24.2 3.3 36 149-184 18-53 (56)
No 1
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=97.99 E-value=1.1e-05 Score=79.62 Aligned_cols=171 Identities=15% Similarity=0.156 Sum_probs=114.5
Q ss_pred CChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhcccCChHHHHHHHhhccccccchh
Q 008944 8 GGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSE 87 (548)
Q Consensus 8 GG~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~vl~sW~dsi~vLqsce~llp~aE 87 (548)
-.+++|+...+|+|+.++++++.||..+-.||.+|+|.+ |....+.||.+.+-. . .|-.++-+|+
T Consensus 88 v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~~c~~~L~~~l~~--~-------n~~~i~~~A~ 152 (279)
T 3i3n_A 88 PEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIR------LKEFCGEFLKKKLHL--S-------NCVAIHSLAH 152 (279)
T ss_dssp SCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHCCT--T-------THHHHHHHHH
T ss_pred CCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHH------HHHHHHHHHHHcCCc--c-------hHHHHHHHHH
Confidence 468999999999999999999999999999999999975 899999999875432 2 3334444555
Q ss_pred hhc---hHHHHHHHHHHhhcCCCCCcccccccCCCCCCCccccccCccccccccCCCCchhhhhcccChhHHHHHHHHHH
Q 008944 88 DLK---IIGRSVDSIASKTSVDPANVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVK 164 (548)
Q Consensus 88 ~l~---Iv~RCidsiA~ka~~dp~~~~ws~t~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~eDL~~L~idl~~rvi~amk 164 (548)
..+ +...|.+-|+..... + +--++...|+.+....++.
T Consensus 153 ~~~~~~L~~~~~~~i~~~f~~----v--------------------------------~~~~~f~~L~~~~l~~lL~--- 193 (279)
T 3i3n_A 153 MYTLSQLALKAADMIRRNFHK----V--------------------------------IQDEEFYTLPFHLIRDWLS--- 193 (279)
T ss_dssp HTTCHHHHHHHHHHHHHTHHH----H--------------------------------TTSSGGGGSCHHHHHHHHT---
T ss_pred HcCcHHHHHHHHHHHHHHHHH----H--------------------------------hcCcChhcCCHHHHHHHhc---
Confidence 443 567888777655421 0 0114556788888776663
Q ss_pred hcC-CCC-chhHHHHHHHHHHHHcCCcccccccchhhhhhHHHHHHHHhhcCCCCCCccchhHHHHHHHHhhhcCCCHHH
Q 008944 165 SKG-RMD-GSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSA 242 (548)
Q Consensus 165 s~g-~~~-~~~I~~~L~~Ya~r~Lp~~~~~~~~~~~~~~~r~llEtiV~LLP~ek~s~vsc~FL~~LLR~A~~l~as~~c 242 (548)
+.. .++ .+.|-++++ +|+.. + ....+..+.. ||..-+-..+|..+|..+++..-++..++.|
T Consensus 194 ~d~L~v~sE~~vf~av~----~W~~~-------~--~~~r~~~~~~---ll~~VRf~l~~~~~L~~~v~~~~l~~~~~~c 257 (279)
T 3i3n_A 194 DLEITVDSEEVLFETVL----KWVQR-------N--AEERERYFEE---LFKLLRLSQMKPTYLTRHVKPERLVANNEVC 257 (279)
T ss_dssp CSSCCCSCHHHHHHHHH----HHHHT-------T--HHHHTTTHHH---HHTTSCGGGSCHHHHHHTTTTSHHHHTCHHH
T ss_pred CcCCCCCCHHHHHHHHH----HHHHc-------C--HHHHHHHHHH---HHHhcCCCCCCHHHHHHHhhccchhcCCHHH
Confidence 222 233 334555555 45431 0 0111233333 3433343348999999999988889999999
Q ss_pred HHHHHH
Q 008944 243 REDLVK 248 (548)
Q Consensus 243 r~~Le~ 248 (548)
+.-|..
T Consensus 258 ~~~l~e 263 (279)
T 3i3n_A 258 VKLVAD 263 (279)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 2
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=97.48 E-value=7.3e-05 Score=65.02 Aligned_cols=57 Identities=23% Similarity=0.222 Sum_probs=50.4
Q ss_pred CccCCCCCChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhcc
Q 008944 1 MNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSI 65 (548)
Q Consensus 1 I~l~dfPGG~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~v 65 (548)
|.|+|++ +++|+...+|+|+.++.+++.|+..+..||++++|.+ |....+.||.+.+
T Consensus 65 i~l~~~~--~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~------L~~~c~~~l~~~I 121 (121)
T 1buo_A 65 YTLDFLS--PKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY------LEEQCLKMLETIQ 121 (121)
T ss_dssp EEECSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHH------HHHHHHHHHHHHC
T ss_pred EEeCCCC--HHHHHHHHHhhcCCCcCCCHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHhC
Confidence 3456665 8999999999999999999999999999999999976 8899999997653
No 3
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=97.38 E-value=5.6e-05 Score=65.67 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=47.6
Q ss_pred CccCCCCCChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhc
Q 008944 1 MNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSS 64 (548)
Q Consensus 1 I~l~dfPGG~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~ 64 (548)
|.|+|++ +++|+...+|+|+.++++++.||..+..||++|+|.+ |....+.||.+.
T Consensus 62 i~l~~~~--~~~f~~ll~~iYtg~~~~~~~~v~~ll~~A~~~~i~~------L~~~C~~~l~~~ 117 (119)
T 3b84_A 62 VVLPAGF--AEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPE------AVELCQSFKPKT 117 (119)
T ss_dssp EEECGGG--HHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHHCC---
T ss_pred EEeCCCC--HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHc
Confidence 3455555 8999999999999999999999999999999999976 888899998753
No 4
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=97.37 E-value=0.00011 Score=62.10 Aligned_cols=50 Identities=30% Similarity=0.335 Sum_probs=46.6
Q ss_pred ChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhc
Q 008944 9 GPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSS 64 (548)
Q Consensus 9 G~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~ 64 (548)
.+++|+...+|+|+.++.+++.||..+..+|++++|.+ |....+.||.+.
T Consensus 59 ~~~~f~~~l~~iYt~~~~~~~~~~~~ll~~A~~~~~~~------L~~~c~~~l~~~ 108 (109)
T 2vkp_A 59 EPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPA------LAKACVNFLETS 108 (109)
T ss_dssp CHHHHHHHHHHHHHCCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhCcHH------HHHHHHHHHHhh
Confidence 58999999999999999999999999999999999986 889999999764
No 5
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=97.33 E-value=6.6e-05 Score=66.83 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=48.4
Q ss_pred CccCCCCCChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhcc
Q 008944 1 MNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSI 65 (548)
Q Consensus 1 I~l~dfPGG~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~v 65 (548)
|.|.|++ +++|+.+.+|+|..+++++..||..+..||++|+|.+ |....+.||.+.+
T Consensus 63 i~l~~~~--~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~------L~~~C~~~l~~~l 119 (135)
T 2yy9_A 63 VVLPAGF--AEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPE------AVELCQSFQPQTS 119 (135)
T ss_dssp EEECGGG--HHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHHCCC---
T ss_pred EEeCCCC--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHhc
Confidence 3456665 8999999999999999999999999999999999976 8888999887644
No 6
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=97.28 E-value=0.00022 Score=62.52 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=47.0
Q ss_pred CccCCCCCChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhh
Q 008944 1 MNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNS 63 (548)
Q Consensus 1 I~l~dfPGG~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~ 63 (548)
|.|.|++ +++|+...+|+|..+++++..||..+..||++|+|.+ |....+.++.+
T Consensus 63 i~l~~v~--~~~f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~~------l~~~C~~~~~~ 117 (119)
T 3m5b_A 63 ALGEGIS--PSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQS------LEEACWRARGD 117 (119)
T ss_dssp ECCSSCC--HHHHHHHHHHHTTCCEEECGGGHHHHHHHHHHTTCHH------HHHHHHHHC--
T ss_pred EEeCCCC--HHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHH------HHHHHHHHHhh
Confidence 3566665 8999999999999999999999999999999999976 77778777654
No 7
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=97.21 E-value=0.00021 Score=61.40 Aligned_cols=48 Identities=25% Similarity=0.449 Sum_probs=45.0
Q ss_pred ChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhh
Q 008944 9 GPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLN 62 (548)
Q Consensus 9 G~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~ 62 (548)
.+++|+...+|+|+.++.+++.||..+..||++|+|.+ |....+.||.
T Consensus 68 ~~~~f~~ll~~~Yt~~~~~~~~~v~~ll~~A~~~~i~~------L~~~C~~~l~ 115 (116)
T 2vpk_A 68 KADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEE------VVTKCKIKME 115 (116)
T ss_dssp CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhCCHH------HHHHHHHHHh
Confidence 58999999999999999999999999999999999975 8889999985
No 8
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=97.20 E-value=0.00023 Score=61.73 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=44.9
Q ss_pred ChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhh
Q 008944 9 GPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLN 62 (548)
Q Consensus 9 G~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~ 62 (548)
.+++|+...+|+|+.++.+++.||..+..||++|+|.+ |....+.||.
T Consensus 70 ~~~~f~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i~~------L~~~C~~~l~ 117 (119)
T 2q81_A 70 NAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQD------IITACHALKS 117 (119)
T ss_dssp CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHH------HHHHHHHHHh
Confidence 58999999999999999999999999999999999986 8888998885
No 9
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=97.17 E-value=0.00027 Score=60.98 Aligned_cols=48 Identities=27% Similarity=0.299 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhh
Q 008944 9 GPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLN 62 (548)
Q Consensus 9 G~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~ 62 (548)
-+++|+...+|+|+.++.+++.|+..+..||++++|.+ |....+.||+
T Consensus 73 ~~~~f~~ll~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~------L~~~C~~~L~ 120 (120)
T 2if5_A 73 SAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPA------VSHVCADLLD 120 (120)
T ss_dssp CHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHTTCHH------HHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHH------HHHHHHHHhC
Confidence 58999999999999999999999999999999999986 8888888874
No 10
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=97.09 E-value=0.00029 Score=63.54 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=45.8
Q ss_pred ccCCCCCChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHh
Q 008944 2 NIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFL 61 (548)
Q Consensus 2 ~l~dfPGG~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL 61 (548)
.|.|++ +++|+...+|+|..++.++..||..+..||++|+|.+ |....+.||
T Consensus 92 ~l~~v~--~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~------L~~~C~~~L 143 (144)
T 2ppi_A 92 ELEGIS--VMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTD------LKTLCCEFL 143 (144)
T ss_dssp ECCSSC--HHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHTTC
T ss_pred EeCCCC--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHH------HHHHHHHHh
Confidence 455554 8999999999999999999999999999999999976 777787776
No 11
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=97.08 E-value=0.00014 Score=63.87 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=38.7
Q ss_pred ChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhh
Q 008944 9 GPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNS 63 (548)
Q Consensus 9 G~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~ 63 (548)
-+++|+...+|+|..+++++..||..+..||++|+|.+ |....+.||.+
T Consensus 78 ~~~~f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~------l~~~C~~~L~~ 126 (129)
T 3ga1_A 78 QPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQE------IMEKGTEFFLK 126 (129)
T ss_dssp CHHHHHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTT------SSCC-------
T ss_pred CHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCCHH------HHHHHHHHHHH
Confidence 38999999999999999999999999999999999986 55567778765
No 12
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=97.08 E-value=0.00045 Score=61.39 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=47.8
Q ss_pred ChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhccc
Q 008944 9 GPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIF 66 (548)
Q Consensus 9 G~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~vl 66 (548)
-+++|+...+|+|+.++.+++.||..+..||++|+|.+ |....+.||.+.+-
T Consensus 83 ~~~~~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~------L~~~C~~~l~~~l~ 134 (138)
T 2z8h_A 83 TVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHN------IEESCFQFLKFKFL 134 (138)
T ss_dssp CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGG------GHHHHHHHTTCCCS
T ss_pred CHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHhcc
Confidence 47999999999999999999999999999999999986 89999999987553
No 13
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=97.04 E-value=0.00061 Score=61.75 Aligned_cols=88 Identities=19% Similarity=0.122 Sum_probs=65.2
Q ss_pred ccCCCCCChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhcccCChHHHHHHHhhccc
Q 008944 2 NIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKS 81 (548)
Q Consensus 2 ~l~dfPGG~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~vl~sW~dsi~vLqsce~ 81 (548)
.|+|+ -+++|+...+|+|+..+.+++.|+..+-.+|++++|.+ |...++.||.+.+ +-...+.+++-.+.
T Consensus 77 ~l~~~--~~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~------l~~~c~~~l~~~l--~~~n~~~~~~~A~~ 146 (172)
T 3htm_A 77 EINDV--EPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALER------LKVMCEDALCSNL--SVENAAEILILADL 146 (172)
T ss_dssp EECSS--CHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHH------HHHHHHHHHHHTC--CTTTHHHHHHHHHH
T ss_pred EecCC--CHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHhC--CHHHHHHHHHHHHH
Confidence 45555 48999999999999999999999999999999999976 8999999998754 22344444443332
Q ss_pred cccchhhhchHHHHHHHHHHhh
Q 008944 82 LLPWSEDLKIIGRSVDSIASKT 103 (548)
Q Consensus 82 llp~aE~l~Iv~RCidsiA~ka 103 (548)
.- --.+...|++-|+...
T Consensus 147 ~~----~~~L~~~~~~~i~~~~ 164 (172)
T 3htm_A 147 HS----ADQLKTQAVDFINYHA 164 (172)
T ss_dssp TT----CHHHHHHHHHHHHHTC
T ss_pred hC----cHHHHHHHHHHHHHHH
Confidence 21 1145778888777654
No 14
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=96.99 E-value=0.00067 Score=65.94 Aligned_cols=175 Identities=15% Similarity=0.159 Sum_probs=103.1
Q ss_pred ccCCCCCChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhcccCChHHHHHHHhhccc
Q 008944 2 NIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKS 81 (548)
Q Consensus 2 ~l~dfPGG~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~vl~sW~dsi~vLqsce~ 81 (548)
.|+|+ .+++|+...+|+|+.+++++..||..+-.||.+|+|.+ |....+.||.+.+-. ..++.++
T Consensus 76 ~l~~v--~~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l~~--~n~~~i~----- 140 (256)
T 3hve_A 76 ELEGI--SVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTD------LKTLCCEFLEGCIAA--ENCIGIR----- 140 (256)
T ss_dssp ECSSC--CHHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHH------HHHHHHHHHHHTCCS--STTHHHH-----
T ss_pred EeCCC--CHHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHH------HHHHHHHHHHhhCCH--hhHHHHH-----
Confidence 45555 48999999999999999999999999999999999986 889999999876532 2334333
Q ss_pred cccchhhh---chHHHHHHHHHHhhcCCCCCcccccccCCCCCCCccccccCccccccccCCCCchhhhhcccChhHHHH
Q 008944 82 LLPWSEDL---KIIGRSVDSIASKTSVDPANVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKR 158 (548)
Q Consensus 82 llp~aE~l---~Iv~RCidsiA~ka~~dp~~~~ws~t~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~eDL~~L~idl~~r 158 (548)
-+|+.. .+...|.+-|+..... + +--++...|+.+....
T Consensus 141 --~~A~~~~~~~L~~~~~~~i~~~f~~---------------------------------v---~~~~~f~~L~~~~l~~ 182 (256)
T 3hve_A 141 --DFALHYCLHHVHYLATEYLETHFRD---------------------------------V---SSTEEFLELSPQKLKE 182 (256)
T ss_dssp --HHHHHTTCHHHHHHHHHHHHHHHHH---------------------------------H---TTCHHHHSSCHHHHHH
T ss_pred --HHHHHcCcHHHHHHHHHHHHHHHHH---------------------------------H---hCCcchhcCCHHHHHH
Confidence 344443 3566787777655421 0 0124667788888877
Q ss_pred HHHHHHhcCCCC-chhHHHHHHHHHHHHcCCcccccccchhhhh-hHHHHHHHHhhcCCCCCCccchhHHHHHHHHhhhc
Q 008944 159 VMIAVKSKGRMD-GSVIGEALRIYAVRWLPDSIDALVSDAQTLR-NKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLV 236 (548)
Q Consensus 159 vi~amks~g~~~-~~~I~~~L~~Ya~r~Lp~~~~~~~~~~~~~~-~r~llEtiV~LLP~ek~s~vsc~FL~~LLR~A~~l 236 (548)
++..=.- .++ .+.|-.+ +.+|+..-.. ...+ -..|++.| .+ | .+|..||...+...-++
T Consensus 183 lL~~d~L--~v~~E~~v~~a----v~~W~~~~~~------~R~~~~~~ll~~V-Rf-~-----~l~~~~l~~~v~~~~l~ 243 (256)
T 3hve_A 183 VISLEKL--NVGNERYVFEA----VIRWIAHDTE------IRKVHMKDVMSAL-WV-S-----GLDSSYLREQMLNEPLV 243 (256)
T ss_dssp HHHCC---------CTTHHH----HTTTCCC--C------CSTTTHHHHHHHH-HH-H-----TTCC-CHHHHHHTSTTH
T ss_pred HHccCCC--CCCCHHHHHHH----HHHHHHcCHH------HHHHHHHHHHHhC-CC-C-----CCCHHHHHHHHhcChHH
Confidence 7743211 122 3334444 4577753110 0001 12455544 22 2 26667788877777677
Q ss_pred CCC-HHHHHHHHH
Q 008944 237 GVD-NSAREDLVK 248 (548)
Q Consensus 237 ~as-~~cr~~Le~ 248 (548)
..+ +.||.-|++
T Consensus 244 ~~~~~~c~~ll~~ 256 (256)
T 3hve_A 244 REIVKECSNIPLS 256 (256)
T ss_dssp HHHHCC-------
T ss_pred HhhHHHHHHHhhC
Confidence 666 568877664
No 15
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=96.98 E-value=0.00028 Score=62.22 Aligned_cols=71 Identities=18% Similarity=0.131 Sum_probs=46.0
Q ss_pred ccCCCCCChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhcccCChHHHHHHHhhccc
Q 008944 2 NIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKS 81 (548)
Q Consensus 2 ~l~dfPGG~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~vl~sW~dsi~vLqsce~ 81 (548)
.|+|+ .+++|+...+|+|+..++++..|+..+-.+|++++|.+ |...++.||.+.+- ..+|-.
T Consensus 68 ~l~~~--~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~------l~~~c~~~l~~~l~---------~~n~~~ 130 (145)
T 4eoz_A 68 EINDV--EPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALER------LKVMCEDALCSNLS---------VENAAE 130 (145)
T ss_dssp EECSS--CHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHH------HHHHHHCC---------------------
T ss_pred EecCC--CHHHHHHHHHhhccCccCCcHHHHHHHHHHHHHhCHHH------HHHHHHHHHHHhCC---------HHHHHH
Confidence 45555 48999999999999999999999999999999999976 88889999876441 234455
Q ss_pred cccchhhh
Q 008944 82 LLPWSEDL 89 (548)
Q Consensus 82 llp~aE~l 89 (548)
++-+|+..
T Consensus 131 ~l~~A~~~ 138 (145)
T 4eoz_A 131 ILILADLH 138 (145)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 55566544
No 16
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=96.98 E-value=0.00048 Score=60.04 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=45.8
Q ss_pred ChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhh
Q 008944 9 GPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNS 63 (548)
Q Consensus 9 G~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~ 63 (548)
.+++|+...+|+|..++.+++.||..+..||++++|.+ |....+.||.+
T Consensus 77 ~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~------L~~~c~~~l~~ 125 (127)
T 1r29_A 77 NPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEH------VVDTCRKFIKA 125 (127)
T ss_dssp CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHH------HHHHHHHHHHh
Confidence 58999999999999999999999999999999999986 88899999865
No 17
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=96.42 E-value=0.0021 Score=55.75 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=38.2
Q ss_pred CCC--ChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCc
Q 008944 6 FPG--GPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTE 46 (548)
Q Consensus 6 fPG--G~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE 46 (548)
+|+ -+++|+...+|+|..++++++.||..+..||++|+|.+
T Consensus 74 l~~~~~~~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~ 116 (125)
T 3ohu_A 74 LPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHN 116 (125)
T ss_dssp CCTTCCHHHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSS
T ss_pred eCCCCCHHHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHH
Confidence 454 68999999999999999999999999999999999986
No 18
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=96.41 E-value=0.0016 Score=56.40 Aligned_cols=44 Identities=7% Similarity=0.072 Sum_probs=39.1
Q ss_pred CccCCCCCChHHHHHHHHhhcCccc-cccchhHHHHHhhhhhhcCCc
Q 008944 1 MNIVDFPGGPKAFEICAKFCYGMTV-TFSAYNVVAARCAAEYLEMTE 46 (548)
Q Consensus 1 I~l~dfPGG~eaFEl~AkFCYG~~v-~lt~~NVv~lRCAAeyLeMtE 46 (548)
|.|+|++ +++|+...+|+|+.++ ++++.||..+..||++|+|..
T Consensus 68 i~l~~~~--~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~ 112 (116)
T 3fkc_A 68 VELSFIR--AEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKF 112 (116)
T ss_dssp EEECSSC--HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHH
T ss_pred EEeCCCC--HHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccc
Confidence 3456655 8999999999999999 799999999999999999974
No 19
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=96.21 E-value=0.0034 Score=62.59 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=66.9
Q ss_pred CccCCCCCChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhcccCChHHHHHHHhhcc
Q 008944 1 MNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTK 80 (548)
Q Consensus 1 I~l~dfPGG~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~vl~sW~dsi~vLqsce 80 (548)
|.|.|++ +++|+...+|+|+..+.++..|+..|-.||++++|.. |...+|.||.+.+-. .+|-
T Consensus 216 i~l~~~~--~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~~~~~~------l~~~c~~~l~~~~~~---------~n~~ 278 (312)
T 3hqi_A 216 VEINDVE--PEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALER------LKVMCEDALCSNLSV---------ENAA 278 (312)
T ss_dssp EEECSSC--HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHTTCCT---------TTHH
T ss_pred EEecCCC--HHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCHHH------HHHHHHHHHHccCCH---------HHHH
Confidence 3456654 8999999999999999999999999999999999975 899999999765421 2333
Q ss_pred ccccchhhh---chHHHHHHHHHHhh
Q 008944 81 SLLPWSEDL---KIIGRSVDSIASKT 103 (548)
Q Consensus 81 ~llp~aE~l---~Iv~RCidsiA~ka 103 (548)
.++.+|+.. .+..+|++-|+...
T Consensus 279 ~~l~~A~~~~~~~L~~~~~~~i~~~~ 304 (312)
T 3hqi_A 279 EILILADLHSADQLKTQAVDFINYHA 304 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344455544 56789999888754
No 20
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=96.02 E-value=0.0014 Score=57.08 Aligned_cols=47 Identities=26% Similarity=0.281 Sum_probs=40.7
Q ss_pred ChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHh
Q 008944 9 GPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFL 61 (548)
Q Consensus 9 G~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL 61 (548)
.+++|+...+|+|+.++++++.||..+..||++|+|.+ |....+.||
T Consensus 76 ~~~~f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~------L~~~C~~~l 122 (124)
T 2ihc_A 76 TVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHN------IEESCFQFL 122 (124)
T ss_dssp CHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHHTBSS------CCGGGGGTC
T ss_pred CHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCHH------HHHHHHHHH
Confidence 47999999999999999999999999999999999986 444455554
No 21
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=85.40 E-value=0.66 Score=39.00 Aligned_cols=35 Identities=9% Similarity=0.140 Sum_probs=30.7
Q ss_pred ChHHHHHHHHhhc-----C---cccc---ccchhHHHHHhhhhhhc
Q 008944 9 GPKAFEICAKFCY-----G---MTVT---FSAYNVVAARCAAEYLE 43 (548)
Q Consensus 9 G~eaFEl~AkFCY-----G---~~v~---lt~~NVv~lRCAAeyLe 43 (548)
-+.+++.+..||| . ..+. |++.|+--|-.||.||+
T Consensus 51 ~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 51 PSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD 96 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCGGGHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcccCCCcCCCCcCcCCHHHHHHHHHHHhhhC
Confidence 3789999999999 4 4555 99999999999999997
No 22
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=78.15 E-value=1.5 Score=40.04 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=42.3
Q ss_pred hHHHHHHHHhhcCcc--------------------------ccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhh
Q 008944 10 PKAFEICAKFCYGMT--------------------------VTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNS 63 (548)
Q Consensus 10 ~eaFEl~AkFCYG~~--------------------------v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~ 63 (548)
+.+++.+..|||-.+ +.++..|+--|--||.||+|.. |+.-+-.|+..
T Consensus 51 ~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~------Lld~~c~~va~ 124 (159)
T 2ast_A 51 AAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG------LLDVTCKTVAN 124 (159)
T ss_dssp HHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHH------HHHHHHHHHHH
Confidence 578999999999544 7899999999999999999975 77777777765
Q ss_pred cc
Q 008944 64 SI 65 (548)
Q Consensus 64 ~v 65 (548)
.+
T Consensus 125 ~i 126 (159)
T 2ast_A 125 MI 126 (159)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 23
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=67.79 E-value=2.7 Score=38.54 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=31.6
Q ss_pred ccCCCCCChHHHHHHHHhhcCcc---------------------------ccccchhHHHHHhhhhhhcCCcccCCCChH
Q 008944 2 NIVDFPGGPKAFEICAKFCYGMT---------------------------VTFSAYNVVAARCAAEYLEMTEDVDKKNLI 54 (548)
Q Consensus 2 ~l~dfPGG~eaFEl~AkFCYG~~---------------------------v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi 54 (548)
.|++++| .+++.+..|||--. +.++..++--|--||.||+|.. |+
T Consensus 43 pl~~V~~--~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~------Ll 114 (160)
T 2p1m_A 43 PLPNVTS--KILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKN------LL 114 (160)
T ss_dssp CCTTSCH--HHHHHHHHC------------------------------------------CHHHHHHTTCHH------HH
T ss_pred eCCcCcH--HHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHH------HH
Confidence 4455554 79999999999533 4688899999999999999965 77
Q ss_pred HHHHHHhhhcc
Q 008944 55 FKLEVFLNSSI 65 (548)
Q Consensus 55 ~ktE~FL~~~v 65 (548)
.-+-.|+...+
T Consensus 115 dl~c~~vA~~i 125 (160)
T 2p1m_A 115 DLTCQTVADMI 125 (160)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 77777776544
No 24
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A
Probab=56.13 E-value=8.3 Score=33.60 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=25.8
Q ss_pred hhcCCCCCChhHHHHHHhhcCCCCcccchhhHHHHHHHHhhCCC
Q 008944 329 EIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPD 372 (548)
Q Consensus 329 EIA~D~nL~~sKF~~LAe~lPd~AR~~hDgLYRAIDiYLKaHP~ 372 (548)
|...|.+.++.++.+.+ .++++|||-||-+||.
T Consensus 90 e~~~~~~~~p~~~~~~~-----------~~~~k~ie~yll~~p~ 122 (122)
T 1vjh_A 90 EKVHKDIDDPHSIIDES-----------VKYFKKLDEAILNFKE 122 (122)
T ss_dssp EESSTTSCCSHHHHHHH-----------HHHHHHHHHHHHHC--
T ss_pred EECCCCCCCHHHHHHHH-----------HHHHHHHHHHHhhCCC
Confidence 45667788888887765 7889999999999984
No 25
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=51.45 E-value=9.5 Score=34.05 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=42.4
Q ss_pred cCCCCCChHHHHHHHHhhcCcc--------------------------ccccchhHHHHHhhhhhhcCCcccCCCChHHH
Q 008944 3 IVDFPGGPKAFEICAKFCYGMT--------------------------VTFSAYNVVAARCAAEYLEMTEDVDKKNLIFK 56 (548)
Q Consensus 3 l~dfPGG~eaFEl~AkFCYG~~--------------------------v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~k 56 (548)
|++++ +.+++.+..|||--. +.++..++--|--||.||++.. |+.-
T Consensus 41 l~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~------Lldl 112 (141)
T 1fs1_B 41 LPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG------LLDV 112 (141)
T ss_dssp CTTCC--HHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHHHHHHHHHTCHH------HHHH
T ss_pred cCCcC--HHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHHHHHHHHHhhhH------HHHH
Confidence 44443 579999999999422 6789999999999999999964 7777
Q ss_pred HHHHhhhcc
Q 008944 57 LEVFLNSSI 65 (548)
Q Consensus 57 tE~FL~~~v 65 (548)
+-.|+...+
T Consensus 113 ~c~~vA~~i 121 (141)
T 1fs1_B 113 TCKTVANMI 121 (141)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777765543
No 26
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=38.24 E-value=25 Score=29.23 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=33.9
Q ss_pred CccccHHHHHHHHHHHHcccCCCcccCCCCCCCCCCCCcccCchhHHHHHhhhhhhhhhhc
Q 008944 271 TACYDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIA 331 (548)
Q Consensus 271 ~tlYDVd~V~ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEIA 331 (548)
+..++.+++.||+..+...... ..+..++..+++++|-|..|..
T Consensus 6 ~~~~~~~lI~ril~~~f~~~kt-----------------rI~~dAl~l~aeyl~iFV~EAv 49 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRT-----------------RVNGDALLLMAELLKVFVREAA 49 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTC-----------------EECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcc-----------------cccHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999987654321 2356789999999999998863
No 27
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=29.42 E-value=30 Score=28.95 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=33.8
Q ss_pred CccccHHHHHHHHHHHHcccCCCcccCCCCCCCCCCCCcccCchhHHHHHhhhhhhhhhhc
Q 008944 271 TACYDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIA 331 (548)
Q Consensus 271 ~tlYDVd~V~ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEIA 331 (548)
+..+..++|.||+..+...++ ...+..++..+++++|-|..|..
T Consensus 10 ~~~i~~~li~ril~~~F~~~k-----------------TkIs~dAl~l~aeyl~iFV~EAv 53 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDK-----------------TKVSGDALQLMVELLKVFVVEAA 53 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTT-----------------CEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCC-----------------ccccHHHHHHHHHHHHHHHHHHH
Confidence 467899999999997765432 13456799999999999998853
No 28
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=26.10 E-value=21 Score=23.76 Aligned_cols=17 Identities=41% Similarity=0.446 Sum_probs=14.1
Q ss_pred hhHHHHHhhhhhhcCCc
Q 008944 30 YNVVAARCAAEYLEMTE 46 (548)
Q Consensus 30 ~NVv~lRCAAeyLeMtE 46 (548)
.||..|-=||||||=-|
T Consensus 3 ~nvq~LLeAAeyLErrE 19 (26)
T 1pd7_B 3 MNIQMLLEAADYLERRE 19 (26)
T ss_dssp CSTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 48999999999998544
No 29
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=22.07 E-value=52 Score=30.27 Aligned_cols=37 Identities=11% Similarity=0.137 Sum_probs=27.1
Q ss_pred hHHHHHHHHhhcCcc-------------------------ccccchhHHHHHhhhhhhcCCc
Q 008944 10 PKAFEICAKFCYGMT-------------------------VTFSAYNVVAARCAAEYLEMTE 46 (548)
Q Consensus 10 ~eaFEl~AkFCYG~~-------------------------v~lt~~NVv~lRCAAeyLeMtE 46 (548)
+.+++.+..|||--+ +.+....+--|-.||.||+|..
T Consensus 59 s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~ 120 (169)
T 3v7d_A 59 SSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKP 120 (169)
T ss_dssp HHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHH
Confidence 578899999998311 3466677778888888888863
No 30
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=20.94 E-value=78 Score=24.18 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=30.2
Q ss_pred cccChhHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 008944 149 CELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVR 184 (548)
Q Consensus 149 ~~L~idl~~rvi~amks~g~~~~~~I~~~L~~Ya~r 184 (548)
..|++++-+|+-..-..+|+--+.+|.++|..|+.+
T Consensus 18 vrId~eLH~rlk~~Aa~~g~Sln~~i~eAL~~yl~~ 53 (56)
T 2kel_A 18 IYMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQK 53 (56)
T ss_dssp EEEEHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 358899999987777778877788999999999876
Done!