BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008945
(548 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LMY|A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
pdb|3LMY|B Chain B, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
Length = 556
Score = 274 bits (700), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 179/500 (35%), Positives = 258/500 (51%), Gaps = 30/500 (6%)
Query: 40 GVRIWPMPLSVSHGHKSLYVG-KDFKIM-SQGSKYKDASGILKDGFSRFLAVVKGAHVVD 97
G +WP+PLSV L++ ++F I S S + +L++ F R+ + G +
Sbjct: 53 GPALWPLPLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWH 112
Query: 98 GDTSKLDQSRVLQGLNVFIS--STKDEL-QYGIDESYKLLVPSPDKPTYAHLEAQTVYGA 154
+ ++ +Q L V I+ S D DESY LLV P A L+A V+GA
Sbjct: 113 HEPAEFQAKTQVQQLLVSITLQSECDAFPNISSDESYTLLVKEP----VAVLKANRVWGA 168
Query: 155 LHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRGLLIDTSRHYQPLPIIKNVIDS 214
L GL+T SQL + + I D PRFS RG+LIDTSRHY P+ II +D+
Sbjct: 169 LRGLETFSQLV---YQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDA 225
Query: 215 MAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-GAYSTSERYTMADAAEIVSYAQKRGINV 273
MA+ K NVLHWHIVD QSFP + ++P+L + G+YS S YT D ++ YA+ RGI V
Sbjct: 226 MAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRV 285
Query: 274 LAELDVPGHALSWGKGYPSLWP-------SKDCQEPLDVSNEFTFKVIDGILSDFSKVFK 326
L E D PGH LSWGKG L D P++ + T+ + + S+VF
Sbjct: 286 LPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEVFP 345
Query: 327 YKFVHLGGDEVNTSCWTLTPHVSKWLKEHSM-NESQAYQYFVLQA--QKIALLHGYEIVN 383
+F+HLGGDEV CW P + ++++ + + + F +Q IA ++ IV
Sbjct: 346 DQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIV- 404
Query: 384 WEETFNNFGNKLSPKTVVHNWLXXXXXXXXXXXXLRCI-VSNQDKWYLDHLD--TTWEQF 440
W+E F++ KL+P T+V W V WYLD + W ++
Sbjct: 405 WQEVFDD-KAKLAPGTIVEVWKDSAYPEELSRVTASGFPVILSAPWYLDLISYGQDWRKY 463
Query: 441 YMNEPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKE 500
Y EPL +Q++L IGGE C+WGE VDA+++ +WPRA+A ERLW+ D ++
Sbjct: 464 YKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERLWSSKD--VRD 521
Query: 501 AKQVTGRLAHFRCLLNQRGI 520
RL RC + +RGI
Sbjct: 522 MDDAYDRLTRHRCRMVERGI 541
>pdb|1O7A|A Chain A, Human Beta-Hexosaminidase B
pdb|1O7A|B Chain B, Human Beta-Hexosaminidase B
pdb|1O7A|C Chain C, Human Beta-Hexosaminidase B
pdb|1O7A|D Chain D, Human Beta-Hexosaminidase B
pdb|1O7A|E Chain E, Human Beta-Hexosaminidase B
pdb|1O7A|F Chain F, Human Beta-Hexosaminidase B
Length = 515
Score = 274 bits (700), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 179/500 (35%), Positives = 258/500 (51%), Gaps = 30/500 (6%)
Query: 40 GVRIWPMPLSVSHGHKSLYVG-KDFKIM-SQGSKYKDASGILKDGFSRFLAVVKGAHVVD 97
G +WP+PLSV L++ ++F I S S + +L++ F R+ + G +
Sbjct: 12 GPALWPLPLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWH 71
Query: 98 GDTSKLDQSRVLQGLNVFIS--STKDEL-QYGIDESYKLLVPSPDKPTYAHLEAQTVYGA 154
+ ++ +Q L V I+ S D DESY LLV P A L+A V+GA
Sbjct: 72 HEPAEFQAKTQVQQLLVSITLQSECDAFPNISSDESYTLLVKEP----VAVLKANRVWGA 127
Query: 155 LHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRGLLIDTSRHYQPLPIIKNVIDS 214
L GL+T SQL + + I D PRFS RG+LIDTSRHY P+ II +D+
Sbjct: 128 LRGLETFSQLV---YQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDA 184
Query: 215 MAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-GAYSTSERYTMADAAEIVSYAQKRGINV 273
MA+ K NVLHWHIVD QSFP + ++P+L + G+YS S YT D ++ YA+ RGI V
Sbjct: 185 MAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRV 244
Query: 274 LAELDVPGHALSWGKGYPSLWP-------SKDCQEPLDVSNEFTFKVIDGILSDFSKVFK 326
L E D PGH LSWGKG L D P++ + T+ + + S+VF
Sbjct: 245 LPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEVFP 304
Query: 327 YKFVHLGGDEVNTSCWTLTPHVSKWLKEHSM-NESQAYQYFVLQA--QKIALLHGYEIVN 383
+F+HLGGDEV CW P + ++++ + + + F +Q IA ++ IV
Sbjct: 305 DQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIV- 363
Query: 384 WEETFNNFGNKLSPKTVVHNWLXXXXXXXXXXXXLRCI-VSNQDKWYLDHLD--TTWEQF 440
W+E F++ KL+P T+V W V WYLD + W ++
Sbjct: 364 WQEVFDD-KAKLAPGTIVEVWKDSAYPEELSRVTASGFPVILSAPWYLDLISYGQDWRKY 422
Query: 441 YMNEPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKE 500
Y EPL +Q++L IGGE C+WGE VDA+++ +WPRA+A ERLW+ D ++
Sbjct: 423 YKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERLWSSKD--VRD 480
Query: 501 AKQVTGRLAHFRCLLNQRGI 520
RL RC + +RGI
Sbjct: 481 MDDAYDRLTRHRCRMVERGI 500
>pdb|2GK1|B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|D Chain D, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|F Chain F, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|H Chain H, X-Ray Crystal Structure Of Ngt-Bound Hexa
Length = 503
Score = 274 bits (700), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 179/500 (35%), Positives = 258/500 (51%), Gaps = 30/500 (6%)
Query: 40 GVRIWPMPLSVSHGHKSLYVG-KDFKIM-SQGSKYKDASGILKDGFSRFLAVVKGAHVVD 97
G +WP+PLSV L++ ++F I S S + +L++ F R+ + G +
Sbjct: 4 GPALWPLPLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWH 63
Query: 98 GDTSKLDQSRVLQGLNVFIS--STKDEL-QYGIDESYKLLVPSPDKPTYAHLEAQTVYGA 154
+ ++ +Q L V I+ S D DESY LLV P A L+A V+GA
Sbjct: 64 HEPAEFQAKTQVQQLLVSITLQSECDAFPNISSDESYTLLVKEP----VAVLKANRVWGA 119
Query: 155 LHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRGLLIDTSRHYQPLPIIKNVIDS 214
L GL+T SQL + + I D PRFS RG+LIDTSRHY P+ II +D+
Sbjct: 120 LRGLETFSQLV---YQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDA 176
Query: 215 MAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-GAYSTSERYTMADAAEIVSYAQKRGINV 273
MA+ K NVLHWHIVD QSFP + ++P+L + G+YS S YT D ++ YA+ RGI V
Sbjct: 177 MAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRV 236
Query: 274 LAELDVPGHALSWGKGYPSLWP-------SKDCQEPLDVSNEFTFKVIDGILSDFSKVFK 326
L E D PGH LSWGKG L D P++ + T+ + + S+VF
Sbjct: 237 LPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEVFP 296
Query: 327 YKFVHLGGDEVNTSCWTLTPHVSKWLKEHSM-NESQAYQYFVLQA--QKIALLHGYEIVN 383
+F+HLGGDEV CW P + ++++ + + + F +Q IA ++ IV
Sbjct: 297 DQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIV- 355
Query: 384 WEETFNNFGNKLSPKTVVHNWLXXXXXXXXXXXXLRCI-VSNQDKWYLDHLD--TTWEQF 440
W+E F++ KL+P T+V W V WYLD + W ++
Sbjct: 356 WQEVFDD-KAKLAPGTIVEVWKDSAYPEELSRVTASGFPVILSAPWYLDLISYGQDWRKY 414
Query: 441 YMNEPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKE 500
Y EPL +Q++L IGGE C+WGE VDA+++ +WPRA+A ERLW+ D ++
Sbjct: 415 YKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERLWSSKD--VRD 472
Query: 501 AKQVTGRLAHFRCLLNQRGI 520
RL RC + +RGI
Sbjct: 473 MDDAYDRLTRHRCRMVERGI 492
>pdb|1NOU|A Chain A, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOU|B Chain B, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOW|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NOW|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NP0|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|1NP0|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|2GJX|B Chain B, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|C Chain C, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|F Chain F, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|G Chain G, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 274 bits (700), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 179/500 (35%), Positives = 258/500 (51%), Gaps = 30/500 (6%)
Query: 40 GVRIWPMPLSVSHGHKSLYVG-KDFKIM-SQGSKYKDASGILKDGFSRFLAVVKGAHVVD 97
G +WP+PLSV L++ ++F I S S + +L++ F R+ + G +
Sbjct: 4 GPALWPLPLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWH 63
Query: 98 GDTSKLDQSRVLQGLNVFIS--STKDEL-QYGIDESYKLLVPSPDKPTYAHLEAQTVYGA 154
+ ++ +Q L V I+ S D DESY LLV P A L+A V+GA
Sbjct: 64 HEPAEFQAKTQVQQLLVSITLQSECDAFPNISSDESYTLLVKEP----VAVLKANRVWGA 119
Query: 155 LHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRGLLIDTSRHYQPLPIIKNVIDS 214
L GL+T SQL + + I D PRFS RG+LIDTSRHY P+ II +D+
Sbjct: 120 LRGLETFSQLV---YQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDA 176
Query: 215 MAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-GAYSTSERYTMADAAEIVSYAQKRGINV 273
MA+ K NVLHWHIVD QSFP + ++P+L + G+YS S YT D ++ YA+ RGI V
Sbjct: 177 MAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRV 236
Query: 274 LAELDVPGHALSWGKGYPSLWP-------SKDCQEPLDVSNEFTFKVIDGILSDFSKVFK 326
L E D PGH LSWGKG L D P++ + T+ + + S+VF
Sbjct: 237 LPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEVFP 296
Query: 327 YKFVHLGGDEVNTSCWTLTPHVSKWLKEHSM-NESQAYQYFVLQA--QKIALLHGYEIVN 383
+F+HLGGDEV CW P + ++++ + + + F +Q IA ++ IV
Sbjct: 297 DQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIV- 355
Query: 384 WEETFNNFGNKLSPKTVVHNWLXXXXXXXXXXXXLRCI-VSNQDKWYLDHLD--TTWEQF 440
W+E F++ KL+P T+V W V WYLD + W ++
Sbjct: 356 WQEVFDD-KAKLAPGTIVEVWKDSAYPEELSRVTASGFPVILSAPWYLDLISYGQDWRKY 414
Query: 441 YMNEPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKE 500
Y EPL +Q++L IGGE C+WGE VDA+++ +WPRA+A ERLW+ D ++
Sbjct: 415 YKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERLWSSKD--VRD 472
Query: 501 AKQVTGRLAHFRCLLNQRGI 520
RL RC + +RGI
Sbjct: 473 MDDAYDRLTRHRCRMVERGI 492
>pdb|2GK1|A Chain A, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|C Chain C, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|E Chain E, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|G Chain G, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GJX|A Chain A, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|D Chain D, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|E Chain E, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|H Chain H, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 261 bits (666), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 155/394 (39%), Positives = 215/394 (54%), Gaps = 27/394 (6%)
Query: 146 LEAQTVYGALHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRGLLIDTSRHYQPL 205
L ++TV+GAL GL+T SQL + S + I D PRF RGLL+DTSRHY PL
Sbjct: 105 LLSETVWGALRGLETFSQLV---WKSAEGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPL 161
Query: 206 PIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAYS-TSERYTMADAAEIV 263
I + +D MAY KLNV HWH+VD SFP E ++P+L G+Y+ + YT D E++
Sbjct: 162 SSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVI 221
Query: 264 SYAQKRGINVLAELDVPGHALSWGKGYPSLW-PSKDCQE------PLDVSNEFTFKVIDG 316
YA+ RGI VLAE D PGH LSWG G P L P E P++ S T++ +
Sbjct: 222 EYARLRGIRVLAEFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEFMST 281
Query: 317 ILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNES--QAYQYFVLQAQKIA 374
+ S VF ++HLGGDEV+ +CW P + ++++ E Q +++ I
Sbjct: 282 FFLEVSSVFPDFYLHLGGDEVDFTCWKSNPEIQDFMRKKGFGEDFKQLESFYIQTLLDIV 341
Query: 375 LLHGYEIVNWEETFNNFGNKLSPKTVVHNWLXXXXXXXXXXXXL------RCIVSNQDKW 428
+G V W+E F+N K+ P T++ W L R ++S W
Sbjct: 342 SSYGKGYVVWQEVFDN-KVKIQPDTIIQVWREDIPVNYMKELELVTKAGFRALLSA--PW 398
Query: 429 YLDHLD--TTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAA 486
YL+ + W+ FY+ EPL EQ+ LVIGGE CMWGE VD +++ +WPRA A
Sbjct: 399 YLNRISYGPDWKDFYVVEPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAV 458
Query: 487 AERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 520
AERLW+ +KL + RL+HFRC L +RG+
Sbjct: 459 AERLWS--NKLTSDLTFAYERLSHFRCELLRRGV 490
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 160/538 (29%), Positives = 242/538 (44%), Gaps = 76/538 (14%)
Query: 37 GEHGVRIWPMPLSVSHGHKSLYVGK------DFKIMSQGSKYKDASGILKDGFSRFLAVV 90
E+G+ +WP P ++ K + KI+ +G+ +++ RF V
Sbjct: 41 NEYGL-LWPRP--TGEADLGNFLSKINLNSIEVKILKKGA----TDDLMEAAAKRFKEQV 93
Query: 91 KGAHVVDGDTSKLDQSRVLQGLNVFISSTKDELQYGIDESYKLLV-PSPDKPTYAHLEAQ 149
A + G T KL V L V + + +DESY L V PS A + A
Sbjct: 94 SLA-IPRGSTPKLTGKAVDVYL-VNENPNEKAFSLEMDESYGLRVSPSGADRVNATITAN 151
Query: 150 TVYGALHGLQTLSQLCQFNFSSRVIEILMTPWI-INDQPRFSFRGLLIDTSRHYQPLPII 208
+ +G HGL+TLSQL F F +LM + I+D+P + +RG+L+DT+R+Y + I
Sbjct: 152 SFFGMRHGLETLSQL--FVFDDIRDHLLMVRDVNISDKPVYPYRGILLDTARNYYSIESI 209
Query: 209 KNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-GAYSTSERYTMADAAEIVSYAQ 267
K I++MA KLN HWHI D+QSFP P L+ GA S + YT A E+V +
Sbjct: 210 KRTIEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGL 269
Query: 268 KRGINVLAELDVPGHALSWGKGYPSL----------WPSKDCQEP----LDVSNEFTFKV 313
+RG+ VL E D P H G+G+ W S C EP L+ + + ++
Sbjct: 270 ERGVRVLPEFDAPAHV---GEGWQDTDLTVCFKAEPWKSY-CGEPPCGQLNPTKDELYQY 325
Query: 314 IDGILSDFSKVFK-YKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMN---ES--QAYQYFV 367
++ I SD ++VF H+GGDEV+ +CW + + ++ ++ + ES + + YF
Sbjct: 326 LEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDLDKESFLKLWNYFQ 385
Query: 368 LQAQK---IALLHGYEIVNWEETFNNFG------NKLSPKTVVHNWLXXX--XXXXXXXX 416
+AQ A ++ W T N+ NK ++ W
Sbjct: 386 QKAQDKAYKAFGKKLPLILWTSTLTNYKHIDDYLNK--DDYIIQVWTTGVDPQIKGLLEK 443
Query: 417 XLRCIVSNQDKWYLD--------------HLDTTWEQFYMNEPLTNITKSEQQKLVIGGE 462
R I+SN D Y D W++ Y N P + E + V+GGE
Sbjct: 444 GYRLIMSNYDALYFDCGYGAWVGAGNNWCSPYIGWQKVYDNSPA--VIALEHRDQVLGGE 501
Query: 463 VCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 520
+W E D S + +WPRAAA AERLW + A + R+ H R L + GI
Sbjct: 502 AALWSEQSDTSTLDGRLWPRAAALAERLWA---EPATSWQDAEYRMLHIRERLVRMGI 556
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 160/538 (29%), Positives = 242/538 (44%), Gaps = 76/538 (14%)
Query: 37 GEHGVRIWPMPLSVSHGHKSLYVGK------DFKIMSQGSKYKDASGILKDGFSRFLAVV 90
E+G+ +WP P ++ K + KI+ +G+ +++ RF V
Sbjct: 38 NEYGL-LWPRP--TGEADLGNFLSKINLNSIEVKILKKGA----TDDLMEAAAKRFKEQV 90
Query: 91 KGAHVVDGDTSKLDQSRVLQGLNVFISSTKDELQYGIDESYKLLV-PSPDKPTYAHLEAQ 149
A + G T KL V L V + + +DESY L V PS A + A
Sbjct: 91 SLA-IPRGSTPKLTGKAVDVYL-VNENPNEKAFSLEMDESYGLRVSPSGADRVNATITAN 148
Query: 150 TVYGALHGLQTLSQLCQFNFSSRVIEILMTPWI-INDQPRFSFRGLLIDTSRHYQPLPII 208
+ +G HGL+TLSQL F F +LM + I+D+P + +RG+L+DT+R+Y + I
Sbjct: 149 SFFGMRHGLETLSQL--FVFDDIRDHLLMVRDVNISDKPVYPYRGILLDTARNYYSIESI 206
Query: 209 KNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-GAYSTSERYTMADAAEIVSYAQ 267
K I++MA KLN HWHI D+QSFP P L+ GA S + YT A E+V +
Sbjct: 207 KRTIEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGL 266
Query: 268 KRGINVLAELDVPGHALSWGKGYPSL----------WPSKDCQEP----LDVSNEFTFKV 313
+RG+ VL E D P H G+G+ W S C EP L+ + + ++
Sbjct: 267 ERGVRVLPEFDAPAHV---GEGWQDTDLTVCFKAEPWKSY-CVEPPCGQLNPTKDELYQY 322
Query: 314 IDGILSDFSKVFK-YKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMN---ES--QAYQYFV 367
++ I SD ++VF H+GGDEV+ +CW + + ++ ++ + ES + + YF
Sbjct: 323 LEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDLDKESFLKLWNYFQ 382
Query: 368 LQAQK---IALLHGYEIVNWEETFNNFG------NKLSPKTVVHNWLXXX--XXXXXXXX 416
+AQ A ++ W T N+ NK ++ W
Sbjct: 383 QKAQDKAYKAFGKKLPLILWTSTLTNYKHIDDYLNK--DDYIIQVWTTGVDPQIKGLLEK 440
Query: 417 XLRCIVSNQDKWYLD--------------HLDTTWEQFYMNEPLTNITKSEQQKLVIGGE 462
R I+SN D Y D W++ Y N P + E + V+GGE
Sbjct: 441 GYRLIMSNYDALYFDCGYGAWVGAGNNWCSPYIGWQKVYDNSPA--VIALEHRDQVLGGE 498
Query: 463 VCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 520
+W E D S + +WPRAAA AERLW + A + R+ H R L + GI
Sbjct: 499 AALWSEQSDTSTLDGRLWPRAAALAERLWA---EPATSWQDAEYRMLHIRERLVRMGI 553
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 174 bits (442), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 157/537 (29%), Positives = 239/537 (44%), Gaps = 74/537 (13%)
Query: 37 GEHGVRIWPMPLSVSHGHKSLYVGK------DFKIMSQGSKYKDASGILKDGFSRFLAVV 90
E+G+ +WP P ++ K + KI+ +G+ +++ RF V
Sbjct: 38 NEYGL-LWPRP--TGEADLGNFLSKINLNSIEVKILKKGA----TDDLMEAAAKRFKEQV 90
Query: 91 KGAHVVDGDTSKLDQSRVLQGLNVFISSTKDELQYGIDESYKLLV-PSPDKPTYAHLEAQ 149
A + G T KL V L V + + +DESY L V PS A + A
Sbjct: 91 SLA-IPRGSTPKLTGKAVDVYL-VNENPNEKAFSLEMDESYGLRVSPSGADRVNATITAN 148
Query: 150 TVYGALHGLQTLSQLCQFNFSSRVIEILMTPWI-INDQPRFSFRGLLIDTSRHYQPLPII 208
+ +G HGL+TLSQL F F +LM + I+D+P + +RG+L+DT+R+Y + I
Sbjct: 149 SFFGMRHGLETLSQL--FVFDDIRDHLLMVRDVNISDKPVYPYRGILLDTARNYYSIESI 206
Query: 209 KNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-GAYSTSERYTMADAAEIVSYAQ 267
K I++MA KLN HWHI D+QSFP P L+ GA S + YT A E+V +
Sbjct: 207 KRTIEAMAAVKLNTNHWHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGL 266
Query: 268 KRGINVLAELDVPGHALSWGKGYPSL----------WPSKDCQEP---LDVSNEFTFKVI 314
+RG+ VL E D P H G+G+ W S P L+ + + ++ +
Sbjct: 267 ERGVRVLPEFDAPAHV---GEGWQDTDLTVCFKAEPWKSYCVAPPCGQLNPTKDELYQYL 323
Query: 315 DGILSDFSKVFK-YKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMN---ES--QAYQYFVL 368
+ I SD ++VF H+GGDEV+ +CW + + ++ ++ + ES + + YF
Sbjct: 324 EDIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDLDKESFLKLWNYFQQ 383
Query: 369 QAQK---IALLHGYEIVNWEETFNNFG------NKLSPKTVVHNWLXXX--XXXXXXXXX 417
+AQ A ++ W T N+ NK ++ W
Sbjct: 384 KAQDKAYKAFGKKLPLILWTSTLTNYKHIDDYLNK--DDYIIQVWTTGVDPQIKGLLEKG 441
Query: 418 LRCIVSNQDKWYLD--------------HLDTTWEQFYMNEPLTNITKSEQQKLVIGGEV 463
R I+SN D Y D W++ Y N P + E + V+GGE
Sbjct: 442 YRLIMSNYDALYFDCGYGAWVGAGNNWCSPYIGWQKVYDNSPA--VIALEHRDQVLGGEA 499
Query: 464 CMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 520
+W E D S + +WPRAAA AERLW + A + R+ H R + GI
Sbjct: 500 ALWSEQSDTSTLDGRLWPRAAALAERLWA---EPATSWQDAEYRMLHIRERFVRMGI 553
>pdb|3GH4|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12
pdb|3GH5|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Glcnac
pdb|3GH7|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Galnac
pdb|3SUR|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nag-Thiazoline.
pdb|3SUS|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With
Gal-Nag-Thiazoline
pdb|3SUT|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Pugnac
pdb|3SUU|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Gal-Pugnac
pdb|3SUV|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Dnj
pdb|3SUW|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Cas
Length = 525
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 114/481 (23%), Positives = 196/481 (40%), Gaps = 61/481 (12%)
Query: 43 IWPMPLSVSHGHKSLYVGKDFKIMSQGSKYKDASGILKDGFSRFLAVVKGAHVVDGDTSK 102
I P P+S + G + K+ I G+ + + G A+ K + G T
Sbjct: 41 ILPKPVSYTVGSGQFVLTKNASIFVAGNNVGETDELFNIG----QALAKKLNASTGYTIS 96
Query: 103 LDQSRVLQGLNVFISSTKDELQYGIDESYKLLVPSPDKPTYAHLEAQTVYGALHGLQTLS 162
+ +S ++++++ G +E Y L+ S L A G G QTL
Sbjct: 97 VVKSNQPTAGSIYLTTVGGNAALG-NEGYDLITTS----NQVTLTANKPEGVFRGNQTLL 151
Query: 163 QLCQFNFSSRVIEILMTPWII-----NDQPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAY 217
QL + + W+I +D+P + +RGL++D +RH+ + +K ID +
Sbjct: 152 QLLPAGIEKNTV-VSGVQWVIPHSNISDKPEYEYRGLMLDVARHFFTVDEVKRQIDLASQ 210
Query: 218 AKLNVLHWHIVDTQSFPLEIPSYPKLWD------GAYSTSERYTMADAAEIVSYAQKRGI 271
K+N H H+ D Q + +EI S+P L + YT +IVSYA +R I
Sbjct: 211 YKINKFHMHLSDDQGWRIEIKSWPDLIEIGSKGQVGGGPGGYYTQEQFKDIVSYAAERYI 270
Query: 272 NVLAELDVPGHALSWGKGYPSLWPSKDCQ----------EPLDVSNEFTFKVIDGILSDF 321
V+ E+D+PGH + Y L P + L E T++ ++ ++S+
Sbjct: 271 EVIPEIDMPGHTNAALASYGELNPDGKRKAMRTDTAVGYSTLMPRAEITYQFVEDVISEL 330
Query: 322 SKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEI 381
+ + ++HLGGDE N + + Y YF + IA +G ++
Sbjct: 331 AAISPSPYIHLGGDESNATS------------------AADYDYFFGRVTAIANSYGKKV 372
Query: 382 VNWEETFNNFGNKLSPKTVVHNW-LXXXXXXXXXXXXLRCIVSNQD-----KWYLDH-LD 434
V W+ + + G + +V+ NW ++ IVS + K+Y D +
Sbjct: 373 VGWDPSDTSSG--ATSDSVLQNWTCSASTGTAAKAKGMKVIVSPANAYLDMKYYSDSPIG 430
Query: 435 TTWEQFYMNEPLTN--ITKSEQQKLVIGGEVCMWGETVDASD-IQQTIWPRAAAAAERLW 491
W F N T + + G E +W ET D + ++P+ + AE W
Sbjct: 431 LQWRGFVNTNRAYNWDPTDCIKGANIYGVESTLWTETFVTQDHLDYMLYPKLLSNAEVGW 490
Query: 492 T 492
T
Sbjct: 491 T 491
>pdb|3RCN|A Chain A, Crystal Structure Of Beta-N-Acetylhexosaminidase From
Arthrobacter Aurescens
Length = 543
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 151/356 (42%), Gaps = 49/356 (13%)
Query: 183 INDQPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPK 242
+ D+PRF +RG +D +RH+ P + I+ A KLNVLH H+ D Q + +I YPK
Sbjct: 132 VEDKPRFGYRGTXLDVARHFXPKDNVLRFIEVXAXHKLNVLHLHLTDDQGWRXQINRYPK 191
Query: 243 LWD-GAYSTSER-----------------YTMADAAEIVSYAQKRGINVLAELDVPGHAL 284
L + GA+ YT D EIV++A R I V+ E+DVPGH+
Sbjct: 192 LTETGAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITVIPEIDVPGHSQ 251
Query: 285 SWGKGYPSLWPS-KDCQEPLDV------------SNEFTFKVIDGILSDFSKVFKYKFVH 331
+ YP L D P++V +E + + +L + ++F ++
Sbjct: 252 AAIAAYPELGAGPADGSSPVEVWTRWGINETVLEVSETSLEFYRNVLDEVVEIFPSPWIS 311
Query: 332 LGGDEVNTSCWTLTPHVSKWLKEHSMNE-SQAYQYFVLQAQKIALLHGYEIVNWEETFNN 390
LGGDEV + W + E +++ S + +FV Q HG W+E +
Sbjct: 312 LGGDEVPLTQWQASAQAQAKAAELGLDDVSGLHSWFVGQLALHLKHHGRATSVWDEIGD- 370
Query: 391 FGNKLSPKTVVHNWLXXXXXXXXXXXXLRCIVSNQDKWYLDHLD-------------TTW 437
L +V +W + + K YLDH TT
Sbjct: 371 --GGLPDGALVASWRGYEGGIDALRKGYDVVXCPEHKLYLDHRQADGDDEPVPVGFVTTL 428
Query: 438 EQFYMNEPLTNITKSEQQKLVIGGEVCMWGETVDA-SDIQQTIWPRAAAAAERLWT 492
+ Y EPL + ++ ++G + +W E +D+ +Q +PR +A +E W+
Sbjct: 429 QAVYEFEPLPGVEGTDFPGRLLGAQANIWSEHLDSPRRVQFAAFPRLSAISEVFWS 484
>pdb|1HP4|A Chain A, Crystal Structure Of Streptomyces Plicatus
Beta-N-Acetylhexosaminidase
pdb|1HP5|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase
Complexed With Intermediate Analouge Nag-Thiazoline
pdb|1JAK|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase In
Complex With (2r,
3r,4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride (Ifg)
pdb|1M01|A Chain A, Wildtype Streptomyces Plicatus Beta-Hexosaminidase In
Complex With Product (Glcnac)
Length = 512
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 166/408 (40%), Gaps = 70/408 (17%)
Query: 128 DESYKLLVPSPDKPTYAHLEAQTVYGALHGLQTLSQLCQFNFSSRVIEILMTPWI----- 182
DE Y+L P + A+ G HG+QTL QL + PW+
Sbjct: 97 DEGYRL----DSGPAGVTITARKAAGLFHGVQTLRQLLPPAVEKDSAQ--PGPWLVAGGT 150
Query: 183 INDQPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPK 242
I D PR+++R ++D SRH+ + +K ID +A K N LH H+ D Q + + I S+P+
Sbjct: 151 IEDTPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPR 210
Query: 243 LWDGAYST------SERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGY------ 290
L ST YT A+ EIV YA R + V+ E+D+PGH + Y
Sbjct: 211 LATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCD 270
Query: 291 ---PSLWP-SKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTP 346
P L+ +K L V + T+ +D ++ + + + +++H+GGDE ++ TP
Sbjct: 271 GVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGDEAHS-----TP 325
Query: 347 HVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNW-- 404
+ F+ + Q I +G +V W + G + +V W
Sbjct: 326 KAD-------------FVAFMKRVQPIVAKYGKTVVGWHQL---AGAEPVEGALVQYWGL 369
Query: 405 -----LXXXXXXXXXXXXLRCIVSNQDKWYLDH-------LDTTWEQF------YMNEPL 446
I+S D+ YLD L +W + Y +P
Sbjct: 370 DRTGDAEKAEVAEAARNGTGLILSPADRTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPA 429
Query: 447 TNITKSEQQKLVIGGEVCMWGETV-DASDIQQTIWPRAAAAAERLWTP 493
+ + V G E +W ET+ D + +PR AE W+P
Sbjct: 430 GYLPGAPADA-VRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWSP 476
>pdb|1M04|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313n)
In Complex With Product (Glcnac)
Length = 512
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 103/408 (25%), Positives = 166/408 (40%), Gaps = 70/408 (17%)
Query: 128 DESYKLLVPSPDKPTYAHLEAQTVYGALHGLQTLSQLCQFNFSSRVIEILMTPWI----- 182
DE Y+L P + A+ G HG+QTL QL + PW+
Sbjct: 97 DEGYRL----DSGPAGVTITARKAAGLFHGVQTLRQLLPPAVEKDSAQ--PGPWLVAGGT 150
Query: 183 INDQPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPK 242
I D PR+++R ++D SRH+ + +K ID +A K N LH H+ D Q + + I S+P+
Sbjct: 151 IEDTPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPR 210
Query: 243 LWDGAYST------SERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGY------ 290
L ST YT A+ EIV YA R + V+ E+D+PGH + Y
Sbjct: 211 LATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCD 270
Query: 291 ---PSLWP-SKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTP 346
P L+ +K L V + T+ +D ++ + + + +++H+GG+E ++ TP
Sbjct: 271 GVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGNEAHS-----TP 325
Query: 347 HVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNW-- 404
+ F+ + Q I +G +V W + G + +V W
Sbjct: 326 KAD-------------FVAFMKRVQPIVAKYGKTVVGWHQL---AGAEPVEGALVQYWGL 369
Query: 405 -----LXXXXXXXXXXXXLRCIVSNQDKWYLDH-------LDTTWEQF------YMNEPL 446
I+S D+ YLD L +W + Y +P
Sbjct: 370 DRTGDAEKAEVAEAARNGTGLILSPADRTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPA 429
Query: 447 TNITKSEQQKLVIGGEVCMWGETV-DASDIQQTIWPRAAAAAERLWTP 493
+ + V G E +W ET+ D + +PR AE W+P
Sbjct: 430 GYLPGAPADA-VRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWSP 476
>pdb|1M03|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313a)
In Complex With Product (Glcnac)
Length = 512
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 103/408 (25%), Positives = 165/408 (40%), Gaps = 70/408 (17%)
Query: 128 DESYKLLVPSPDKPTYAHLEAQTVYGALHGLQTLSQLCQFNFSSRVIEILMTPWI----- 182
DE Y+L P + A+ G HG+QTL QL + PW+
Sbjct: 97 DEGYRL----DSGPAGVTITARKAAGLFHGVQTLRQLLPPAVEKDSAQ--PGPWLVAGGT 150
Query: 183 INDQPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPK 242
I D PR+++R ++D SRH+ + +K ID +A K N LH H+ D Q + + I S+P+
Sbjct: 151 IEDTPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPR 210
Query: 243 LWDGAYST------SERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGY------ 290
L ST YT A+ EIV YA R + V+ E+D+PGH + Y
Sbjct: 211 LATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCD 270
Query: 291 ---PSLWP-SKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTP 346
P L+ +K L V + T+ +D ++ + + + +++H+GG E ++ TP
Sbjct: 271 GVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGAEAHS-----TP 325
Query: 347 HVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNW-- 404
+ F+ + Q I +G +V W + G + +V W
Sbjct: 326 KAD-------------FVAFMKRVQPIVAKYGKTVVGWHQL---AGAEPVEGALVQYWGL 369
Query: 405 -----LXXXXXXXXXXXXLRCIVSNQDKWYLDH-------LDTTWEQF------YMNEPL 446
I+S D+ YLD L +W + Y +P
Sbjct: 370 DRTGDAEKAEVAEAARNGTGLILSPADRTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPA 429
Query: 447 TNITKSEQQKLVIGGEVCMWGETV-DASDIQQTIWPRAAAAAERLWTP 493
+ + V G E +W ET+ D + +PR AE W+P
Sbjct: 430 GYLPGAPADA-VRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWSP 476
>pdb|1QBB|A Chain A, Bacterial Chitobiase Complexed With Chitobiose (Dinag)
pdb|1QBA|A Chain A, Bacterial Chitobiase, Glycosyl Hydrolase Family 20
Length = 858
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 64/252 (25%)
Query: 147 EAQTV----YGALHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRGLLIDTSRHY 202
EAQ + G +GLQ++ L + S ++ + + D PRF +RG+ +D +R++
Sbjct: 270 EAQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDAS-----DAPRFPYRGIFLDVARNF 324
Query: 203 QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD----GAYSTSER----- 253
+ ++D MA KLN H+H+ D + + +EIP P+L + + SE
Sbjct: 325 HKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLP 384
Query: 254 ------------YTMADAAEIVSYAQKRGINVLAELDVPGHA----LSWGKGYPSLWPSK 297
++ D +I+ YAQ R I V+ E+D+P HA +S Y L +
Sbjct: 385 QYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSMEARYKKLHAAG 444
Query: 298 DCQE--------PLDVSN-----------------EFTFKVIDGILSDFSKVFK-----Y 327
QE P D SN + + + +D ++ + +++ K
Sbjct: 445 KEQEANEFRLVDPTDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKVIGEIAQMHKEAGQPI 504
Query: 328 KFVHLGGDEVNT 339
K H GGDE
Sbjct: 505 KTWHFGGDEAKN 516
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 30/162 (18%)
Query: 147 EAQTV----YGALHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRGLLIDTSRHY 202
EAQ + G +GLQ++ L + S ++ + + D PRF +RG+ +D +R++
Sbjct: 270 EAQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDAS-----DAPRFPYRGIFLDVARNF 324
Query: 203 QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD----GAYSTSER----- 253
+ ++D MA KLN H+H+ D + + +EIP P+L + + SE
Sbjct: 325 HKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLP 384
Query: 254 ------------YTMADAAEIVSYAQKRGINVLAELDVPGHA 283
++ D +I+ YAQ R I V+ E+D+P HA
Sbjct: 385 QYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHA 426
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 30/162 (18%)
Query: 147 EAQTV----YGALHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRGLLIDTSRHY 202
EAQ + G +GLQ++ L + S ++ + + D PRF +RG+ +D +R++
Sbjct: 270 EAQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDAS-----DAPRFPYRGIFLDVARNF 324
Query: 203 QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD----GAYSTSER----- 253
+ ++D MA KLN H+H+ D + + +EIP P+L + + SE
Sbjct: 325 HKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLP 384
Query: 254 ------------YTMADAAEIVSYAQKRGINVLAELDVPGHA 283
++ D +I+ YAQ R I V+ E+D+P HA
Sbjct: 385 QYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHA 426
>pdb|1YHT|A Chain A, Crystal Structure Analysis Of Dispersin B
Length = 367
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 193 GLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLE-----------IPSYP 241
GL++D +RH+ +IK+ ID+++ + N LH H D +++ +E +
Sbjct: 20 GLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKD 79
Query: 242 KLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALS--------WGKGYPSL 293
++ Y+ + +I +YA+ +GI ++ ELD P H + G Y
Sbjct: 80 GIYINPYTGKPFLSYRQLDDIKAYAKAKGIELIPELDSPNHMTAIFKLVQKDRGVKYLQG 139
Query: 294 WPSKDCQEPLDVSNEFTFKVIDGILSDFSKVF--KYKFVHLGGDEVNTSC 341
S+ + +D++N + + ++S+ +F + H+GGDE S
Sbjct: 140 LKSRQVDDEIDITNADSITFMQSLMSEVIDIFGDTSQHFHIGGDEFGYSV 189
>pdb|2YLL|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 454
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 115/306 (37%), Gaps = 54/306 (17%)
Query: 255 TMADAAEIVSYAQKRGINVLAELDVPGHALS-------WGKGYPSL-WPSKDCQEPLDVS 306
T + ++++YA+ +GI ++ ++ PGH + G P+ + K +D+
Sbjct: 110 TESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQNPNFSYFGKKSARTVDLD 169
Query: 307 NE----FTFKVIDGILSDFSK---VFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNE 359
NE FT +ID + F+K +F D + W++ K+
Sbjct: 170 NEQAVAFTKALIDKYAAYFAKKTEIFNIGLDEYANDATDAKGWSVL-QADKYYPNEGY-P 227
Query: 360 SQAYQYFVLQAQKIALL---HGYEIV--------NWEETFNNFGNKLSPKTVVHNWLXXX 408
+ Y+ F+ A +A + HG + + N + +F +F + +V W
Sbjct: 228 VKGYEKFIAYANDLARIVKSHGLKPMAFNDGIYYNSDTSFGSFDKDI----IVSMWTGGW 283
Query: 409 XXXXXXXXXLRC-----IVSNQDKWYLD-----------HLDTTWEQFYMNEPLTNITKS 452
L I++ D WY +LD N P+T++ K+
Sbjct: 284 GGYDVASSKLLAEKGHQILNTNDAWYYVLGRNADGQGWYNLDQGLNGI-KNTPITSVPKT 342
Query: 453 EQQKL-VIGGEVCMWGETVDA----SDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGR 507
E + +IGG V W +T A S + + + A A AE Y+ + +V
Sbjct: 343 EGADIPIIGGMVAAWADTPSARYSPSRLFKLMRHFANANAEYFAADYESAEQALNEVPKD 402
Query: 508 LAHFRC 513
L +
Sbjct: 403 LNRYTA 408
>pdb|2YL8|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 113/306 (36%), Gaps = 54/306 (17%)
Query: 255 TMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSL--------WPSKDCQEPLDVS 306
T + ++++YA+ +GI ++ ++ PGH + L + K +D+
Sbjct: 90 TESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQNPNFSYFGKKSARTVDLD 149
Query: 307 NE----FTFKVIDGILSDFSK---VFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNE 359
NE FT +ID + F+K +F D + W++ K+
Sbjct: 150 NEQAVAFTKALIDKYAAYFAKKTEIFNIGLDQYANDATDAKGWSVL-QADKYYPNEGY-P 207
Query: 360 SQAYQYFVLQAQKIALL---HGYEIV--------NWEETFNNFGNKLSPKTVVHNWLXXX 408
+ Y+ F+ A +A + HG + + N + +F +F + +V W
Sbjct: 208 VKGYEKFIAYANDLARIVKSHGLKPMAFNDGIYYNSDTSFGSFDKDI----IVSMWTGGW 263
Query: 409 XXXXXXXXXLRC-----IVSNQDKWYLD-----------HLDTTWEQFYMNEPLTNITKS 452
L I++ D WY +LD N P+T++ K+
Sbjct: 264 GGYDVASSKLLAEKGHQILNTNDAWYYVLGRNADGQGWYNLDQGLNGI-KNTPITSVPKT 322
Query: 453 EQQKL-VIGGEVCMWGETVDA----SDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGR 507
E + +IGG V W +T A S + + + A A AE Y+ + +V
Sbjct: 323 EGADIPIIGGMVAAWADTPSARYSPSRLFKLMRHFANANAEYFAADYESAEQALNEVPKD 382
Query: 508 LAHFRC 513
L +
Sbjct: 383 LNRYTA 388
>pdb|3RPM|A Chain A, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
pdb|3RPM|B Chain B, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
Length = 467
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 101/260 (38%), Gaps = 48/260 (18%)
Query: 255 TMADAAEIVSYAQKRGINVLAELDVPGHALS-------WGKGYPSL-WPSKDCQEPLDVS 306
T + ++++YA+ +GI ++ ++ PGH + G P+ + K +D+
Sbjct: 95 TESQXTDLINYAKDKGIGLIPTVNSPGHXDAILNAXKELGIQNPNFSYFGKKSARTVDLD 154
Query: 307 NE----FTFKVIDGILSDFSK---VFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNE 359
NE FT +ID + F+K +F D + W++ K+
Sbjct: 155 NEQAVAFTKALIDKYAAYFAKKTEIFNIGLDEYANDATDAKGWSVL-QADKYYPNEGY-P 212
Query: 360 SQAYQYFVLQAQKIALL---HGYE--------IVNWEETFNNFGNKLSPKTVVHNWLXXX 408
+ Y+ F+ A +A + HG + N + +F +F + +V W
Sbjct: 213 VKGYEKFIAYANDLARIVKSHGLKPXAFNDGIYYNSDTSFGSFDKDI----IVSXWTGGW 268
Query: 409 XXXXXXXXXLRC-----IVSNQDKW-YLDHLDTTWEQFY---------MNEPLTNITKSE 453
L I++ D W Y+ + + +Y N P+T++ K+E
Sbjct: 269 GGYDVASSKLLAEKGHQILNTNDAWCYVLGRNADGQGWYNLDQGLNGIKNTPITSVPKTE 328
Query: 454 QQKL-VIGGEVCMWGETVDA 472
+ +IGG V W +T A
Sbjct: 329 GADIPIIGGXVAAWADTPSA 348
>pdb|2YL6|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 113/306 (36%), Gaps = 54/306 (17%)
Query: 255 TMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSL--------WPSKDCQEPLDVS 306
T + ++++YA+ +GI ++ ++ PGH + L + K +D+
Sbjct: 90 TESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQNPNFSYFGKKSARTVDLD 149
Query: 307 NE----FTFKVIDGILSDFSK---VFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNE 359
NE FT +ID + F+K +F D + W++ K+
Sbjct: 150 NEQAVAFTKALIDKYAAYFAKKTEIFNIGLDEYANDATDAKGWSVL-QADKYYPNEGY-P 207
Query: 360 SQAYQYFVLQAQKIALL---HGYEIV--------NWEETFNNFGNKLSPKTVVHNWLXXX 408
+ Y+ F+ A +A + HG + + N + +F +F + +V W
Sbjct: 208 VKGYEKFIAYANDLARIVKSHGLKPMAFNDGIYYNSDTSFGSFDKDI----IVSMWTGGW 263
Query: 409 XXXXXXXXXLRC-----IVSNQDKWYLD-----------HLDTTWEQFYMNEPLTNITKS 452
L I++ D WY +LD N P+T++ K+
Sbjct: 264 GGYDVASSKLLAEKGHQILNTNDAWYYVLGRNADGQGWYNLDQGLNGI-KNTPITSVPKT 322
Query: 453 EQQKL-VIGGEVCMWGETVDA----SDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGR 507
E + +IGG V W +T A S + + + A A AE Y+ + +V
Sbjct: 323 EGADIPIIGGMVAAWADTPSARYSPSRLFKLMRHFANANAEYFAADYESAEQALNEVPKD 382
Query: 508 LAHFRC 513
L +
Sbjct: 383 LNRYTA 388
>pdb|2YL5|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 255 TMADAAEIVSYAQKRGINVLAELDVPGHALSW-------GKGYPSLWPSKDCQEPLDVSN 307
T A+ E++ YA+ + I ++ ++ PGH + G P K + +D+ N
Sbjct: 93 TQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKN 152
Query: 308 EFTFKVIDGILSDFSKVF--KYKFVHLGGDE 336
E + ++ + F K K + G DE
Sbjct: 153 EEAMNFVKALIGKYMDFFAGKTKIFNFGTDE 183
>pdb|2YLA|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 255 TMADAAEIVSYAQKRGINVLAELDVPGHALSW-------GKGYPSLWPSKDCQEPLDVSN 307
T A+ E++ YA+ + I ++ ++ PGH + G P K + +D+ N
Sbjct: 93 TQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKN 152
Query: 308 EFTFKVIDGILSDFSKVF--KYKFVHLGGDE 336
E + ++ + F K K + G D+
Sbjct: 153 EEAMNFVKALIGKYMDFFAGKTKIFNFGTDQ 183
>pdb|2YL9|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 457
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 255 TMADAAEIVSYAQKRGINVLAELDVPGHALSW-------GKGYPSLWPSKDCQEPLDVSN 307
T A+ E++ YA+ + I ++ ++ PGH + G P K + +D+ N
Sbjct: 110 TQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKN 169
Query: 308 EFTFKVIDGILSDFSKVF--KYKFVHLGGDE 336
E + ++ + F K K + G D+
Sbjct: 170 EEAMNFVKALIGKYMDFFAGKTKIFNFGTDQ 200
>pdb|1NQ6|A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A
From Streptomyces Halstedii Jm8
Length = 302
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 202 YQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAE 261
Y + N + AYA +D Q F P WD S+ ++ + A
Sbjct: 14 YFGAAVAANHLGEAAYAS-------TLDAQ-FGSVTPENEMKWDAVESSRNSFSFSAADR 65
Query: 262 IVSYAQKRGINVLAELDVPGHALSWGKGYP 291
IVS+AQ +G + V GH L W P
Sbjct: 66 IVSHAQSKG------MKVRGHTLVWHSQLP 89
>pdb|4FDI|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDI|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDJ|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
pdb|4FDJ|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
Length = 502
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 49 SVSHGHKSLYVGKDFKIMSQGSKYKDASGILKDGFSRFLAVVKGAHVVD 97
+V H +Y K F SQ +Y DA + D + L +++ HV D
Sbjct: 205 AVDATHAPVYASKPFLGTSQRGRYGDAVREIDDSIGKILELLQDLHVAD 253
>pdb|1E1C|A Chain A, Methylmalonyl-Coa Mutase H244a Mutant
pdb|1E1C|C Chain C, Methylmalonyl-Coa Mutase H244a Mutant
Length = 727
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 191 FRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYST 250
+ ++ + Y P P ++ + + AY N+ W+ + I Y GA +
Sbjct: 200 LKEFMVRNTYIYPPQPSMRIISEIFAYTSANMPKWN-------SISISGYAMQEAGATAD 252
Query: 251 SE-RYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKG 289
E YT+AD + + + G+NV + P + WG G
Sbjct: 253 IEMAYTLADGVDYIRAGESVGLNV--DQFAPRLSFFWGIG 290
>pdb|3QI3|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI3|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI4|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
pdb|3QI4|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
Length = 533
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 90 VKGAHVVDGDTSKLDQSRVLQGLNVFISSTKDELQYGIDESYKLLVPSPDKPTY 143
++G VV+ + K D ++ + L S T +Y +++K L P D PTY
Sbjct: 130 LEGLKVVEIEKCKSDIKKMREELAARSSRTNCPCKYSFLDNHKKLTPRRDVPTY 183
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 370 AQKIALLHGYEIVNWEETFNNFGNKLSPKT 399
A K+A+++G +V + TF F N L P T
Sbjct: 222 ADKVAVIYGGNLVEYNSTFQIFKNPLHPYT 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,287,068
Number of Sequences: 62578
Number of extensions: 666714
Number of successful extensions: 1429
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1338
Number of HSP's gapped (non-prelim): 38
length of query: 548
length of database: 14,973,337
effective HSP length: 104
effective length of query: 444
effective length of database: 8,465,225
effective search space: 3758559900
effective search space used: 3758559900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)