Query 008945
Match_columns 548
No_of_seqs 237 out of 1625
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 18:30:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2499 Beta-N-acetylhexosamin 100.0 5E-107 1E-111 837.9 43.4 515 13-546 5-542 (542)
2 cd06562 GH20_HexA_HexB-like Be 100.0 1.5E-88 3.3E-93 710.8 34.2 329 189-519 1-348 (348)
3 cd06563 GH20_chitobiase-like T 100.0 1.4E-84 3E-89 683.7 32.1 315 189-508 1-357 (357)
4 cd06570 GH20_chitobiase-like_1 100.0 1.7E-84 3.6E-89 668.3 31.5 299 189-508 1-311 (311)
5 cd06569 GH20_Sm-chitobiase-lik 100.0 2E-82 4.4E-87 681.2 32.8 312 185-496 1-420 (445)
6 cd06568 GH20_SpHex_like A subg 100.0 6.6E-80 1.4E-84 640.0 31.0 296 189-508 1-329 (329)
7 COG3525 Chb N-acetyl-beta-hexo 100.0 2.4E-76 5.2E-81 629.7 30.9 391 127-525 204-645 (732)
8 PF00728 Glyco_hydro_20: Glyco 100.0 6.4E-76 1.4E-80 616.5 17.0 306 189-494 1-351 (351)
9 cd02742 GH20_hexosaminidase Be 100.0 6.4E-74 1.4E-78 590.4 28.5 284 191-492 1-303 (303)
10 cd06564 GH20_DspB_LnbB-like Gl 100.0 2E-70 4.3E-75 570.1 27.4 286 190-493 1-326 (326)
11 cd06565 GH20_GcnA-like Glycosy 100.0 1.6E-51 3.6E-56 423.2 22.6 280 191-492 1-301 (301)
12 PF14845 Glycohydro_20b2: beta 99.7 3.2E-16 6.9E-21 141.7 12.9 119 43-164 1-128 (128)
13 PF02838 Glyco_hydro_20b: Glyc 99.6 1.5E-15 3.3E-20 136.1 11.4 123 41-186 2-124 (124)
14 PF02638 DUF187: Glycosyl hydr 97.6 0.0026 5.5E-08 66.3 17.4 183 191-378 2-220 (311)
15 PF07555 NAGidase: beta-N-acet 97.5 0.00089 1.9E-08 69.4 11.9 173 192-407 1-190 (306)
16 PF13200 DUF4015: Putative gly 96.5 0.085 1.8E-06 55.0 15.2 161 205-381 12-190 (316)
17 COG1649 Uncharacterized protei 95.9 0.39 8.5E-06 51.8 17.1 136 188-326 44-199 (418)
18 PF14871 GHL6: Hypothetical gl 95.3 0.19 4E-06 45.9 10.4 109 209-326 3-124 (132)
19 PF02449 Glyco_hydro_42: Beta- 95.0 0.17 3.7E-06 54.0 10.9 129 203-349 7-149 (374)
20 PF10566 Glyco_hydro_97: Glyco 94.8 0.068 1.5E-06 54.6 6.7 113 201-323 27-148 (273)
21 COG3661 AguA Alpha-glucuronida 92.9 2.9 6.3E-05 45.0 14.6 168 124-327 90-279 (684)
22 smart00642 Aamy Alpha-amylase 92.2 0.57 1.2E-05 44.3 7.8 76 203-285 16-97 (166)
23 PRK12313 glycogen branching en 91.9 1.8 3.9E-05 49.6 12.8 117 202-325 166-301 (633)
24 TIGR02402 trehalose_TreZ malto 91.8 1.4 3.1E-05 49.5 11.6 112 205-324 110-235 (542)
25 TIGR01515 branching_enzym alph 90.8 1.8 3.8E-05 49.5 11.2 110 208-325 159-287 (613)
26 COG0296 GlgB 1,4-alpha-glucan 90.7 1.4 3E-05 50.1 10.0 122 194-325 150-295 (628)
27 PRK12568 glycogen branching en 90.0 2.4 5.3E-05 49.1 11.4 116 202-325 265-400 (730)
28 PF00150 Cellulase: Cellulase 90.0 1.3 2.8E-05 44.4 8.4 157 190-380 9-165 (281)
29 PRK05402 glycogen branching en 89.9 2.7 5.8E-05 49.0 11.9 117 202-325 261-396 (726)
30 PLN02447 1,4-alpha-glucan-bran 89.9 8.9 0.00019 44.7 15.8 168 202-386 246-445 (758)
31 PRK14706 glycogen branching en 89.9 7.6 0.00016 44.6 15.2 116 202-325 163-298 (639)
32 PRK14705 glycogen branching en 88.4 3.3 7.2E-05 50.7 11.4 110 208-325 768-896 (1224)
33 PLN02960 alpha-amylase 88.3 3.5 7.6E-05 48.5 11.1 116 202-325 412-548 (897)
34 PF00128 Alpha-amylase: Alpha 88.3 0.49 1.1E-05 47.8 4.0 74 205-285 3-79 (316)
35 TIGR02100 glgX_debranch glycog 87.6 3.9 8.5E-05 47.3 11.1 107 211-325 189-333 (688)
36 PF03648 Glyco_hydro_67N: Glyc 87.3 3.1 6.6E-05 37.2 8.0 34 127-160 88-121 (122)
37 KOG3698 Hyaluronoglucosaminida 87.0 1.8 4E-05 47.8 7.4 75 193-281 20-97 (891)
38 TIGR02403 trehalose_treC alpha 86.5 2.3 4.9E-05 47.9 8.2 114 204-324 25-185 (543)
39 PF02065 Melibiase: Melibiase; 86.1 3.9 8.4E-05 44.2 9.4 164 152-332 14-189 (394)
40 TIGR02104 pulA_typeI pullulana 85.2 6.4 0.00014 44.9 11.1 132 192-325 149-311 (605)
41 PRK03705 glycogen debranching 84.3 8.1 0.00018 44.5 11.4 108 211-326 184-329 (658)
42 PRK10785 maltodextrin glucosid 84.2 3.9 8.5E-05 46.6 8.8 79 200-285 171-253 (598)
43 cd06593 GH31_xylosidase_YicI Y 83.9 6.7 0.00015 40.6 9.8 121 186-324 6-148 (308)
44 TIGR02102 pullulan_Gpos pullul 83.2 19 0.00041 44.0 14.2 120 204-325 478-634 (1111)
45 PRK09441 cytoplasmic alpha-amy 81.9 5.4 0.00012 44.1 8.6 79 205-285 21-108 (479)
46 PLN02187 rooty/superroot1 81.2 3.9 8.4E-05 45.0 7.1 26 250-275 217-242 (462)
47 TIGR02456 treS_nterm trehalose 81.1 4.6 0.0001 45.4 7.8 74 204-284 26-102 (539)
48 PRK14511 maltooligosyl trehalo 80.7 5.8 0.00013 46.9 8.5 76 203-285 17-96 (879)
49 PRK10933 trehalose-6-phosphate 79.6 6.5 0.00014 44.4 8.3 75 204-285 31-108 (551)
50 TIGR02401 trehalose_TreY malto 79.4 7.7 0.00017 45.6 8.9 77 202-285 12-92 (825)
51 PRK14510 putative bifunctional 79.2 15 0.00033 45.4 11.8 110 210-323 191-333 (1221)
52 KOG0470 1,4-alpha-glucan branc 79.1 5.8 0.00013 45.4 7.5 107 208-323 257-392 (757)
53 PLN02784 alpha-amylase 78.1 9.8 0.00021 44.8 9.2 87 192-286 507-596 (894)
54 PRK08636 aspartate aminotransf 77.1 9.1 0.0002 41.0 8.3 25 250-274 188-212 (403)
55 COG0436 Aspartate/tyrosine/aro 76.8 6.2 0.00013 42.5 6.9 26 250-275 176-201 (393)
56 PLN00145 tyrosine/nicotianamin 76.8 4.9 0.00011 43.7 6.1 26 250-275 203-228 (430)
57 KOG0259 Tyrosine aminotransfer 76.4 8.8 0.00019 40.9 7.5 56 228-284 180-245 (447)
58 PLN02877 alpha-amylase/limit d 76.0 33 0.00072 41.2 12.9 28 256-284 465-492 (970)
59 cd06598 GH31_transferase_CtsZ 74.0 22 0.00047 37.2 9.9 119 186-323 6-152 (317)
60 PLN00196 alpha-amylase; Provis 73.8 13 0.00027 40.7 8.3 71 205-285 43-119 (428)
61 cd06592 GH31_glucosidase_KIAA1 72.8 22 0.00047 36.8 9.5 109 201-322 25-151 (303)
62 PLN02361 alpha-amylase 72.8 13 0.00029 40.2 8.1 72 206-284 29-102 (401)
63 PF01055 Glyco_hydro_31: Glyco 71.0 26 0.00056 38.1 10.0 133 186-332 25-176 (441)
64 PLN02368 alanine transaminase 71.0 8.9 0.00019 41.5 6.3 26 250-275 223-248 (407)
65 PLN02376 1-aminocyclopropane-1 70.6 19 0.00041 40.1 8.9 26 250-275 212-237 (496)
66 TIGR03234 OH-pyruv-isom hydrox 70.3 7 0.00015 38.9 5.0 103 158-277 41-143 (254)
67 COG3977 Alanine-alpha-ketoisov 69.7 2.5 5.3E-05 43.7 1.5 129 128-276 88-218 (417)
68 PRK07590 L,L-diaminopimelate a 69.4 21 0.00046 38.2 8.9 26 250-275 189-214 (409)
69 PRK07681 aspartate aminotransf 69.4 13 0.00027 39.8 7.1 25 250-274 179-203 (399)
70 PLN02656 tyrosine transaminase 69.1 14 0.0003 39.8 7.3 25 250-274 182-206 (409)
71 PLN00143 tyrosine/nicotianamin 68.8 16 0.00035 39.3 7.7 26 250-275 183-208 (409)
72 TIGR02455 TreS_stutzeri trehal 68.7 13 0.00029 42.4 7.1 70 209-284 77-156 (688)
73 PF14701 hDGE_amylase: glucano 68.4 63 0.0014 35.2 12.0 92 204-296 20-118 (423)
74 PRK14507 putative bifunctional 68.0 32 0.0007 43.7 10.8 77 201-284 753-833 (1693)
75 cd06602 GH31_MGAM_SI_GAA This 67.3 81 0.0018 33.3 12.5 109 201-324 19-153 (339)
76 PRK05839 hypothetical protein; 67.2 39 0.00085 35.7 10.2 26 250-275 168-193 (374)
77 PTZ00377 alanine aminotransfer 67.1 19 0.00041 39.7 8.1 26 250-275 231-256 (481)
78 COG1874 LacA Beta-galactosidas 66.4 1E+02 0.0022 35.7 13.7 125 203-342 27-167 (673)
79 PRK09257 aromatic amino acid a 66.0 21 0.00045 38.1 7.9 26 250-275 185-210 (396)
80 PTZ00433 tyrosine aminotransfe 66.0 13 0.00028 39.9 6.4 25 251-275 191-215 (412)
81 PF13199 Glyco_hydro_66: Glyco 65.8 12 0.00027 42.2 6.2 145 184-332 97-264 (559)
82 PRK06348 aspartate aminotransf 65.6 15 0.00033 38.9 6.7 25 250-274 175-199 (384)
83 cd00452 KDPG_aldolase KDPG and 64.8 11 0.00025 36.0 5.1 121 204-335 14-152 (190)
84 PRK14582 pgaB outer membrane N 64.1 2.8E+02 0.0062 32.2 19.4 159 191-357 314-489 (671)
85 PLN03244 alpha-amylase; Provis 64.0 19 0.0004 42.2 7.2 71 254-325 438-523 (872)
86 KOG0258 Alanine aminotransfera 63.6 61 0.0013 34.9 10.3 144 144-335 139-296 (475)
87 PLN02231 alanine transaminase 63.6 29 0.00063 39.0 8.7 26 250-275 284-309 (534)
88 cd00019 AP2Ec AP endonuclease 62.1 11 0.00024 38.1 4.7 62 203-277 82-143 (279)
89 PRK09147 succinyldiaminopimela 62.0 28 0.00061 37.0 8.0 25 250-274 179-203 (396)
90 PRK07337 aminotransferase; Val 61.4 22 0.00047 37.7 7.0 26 250-275 176-201 (388)
91 PRK06290 aspartate aminotransf 61.1 20 0.00043 38.7 6.6 25 250-274 192-216 (410)
92 cd06565 GH20_GcnA-like Glycosy 60.2 10 0.00022 39.4 4.0 66 153-223 11-77 (301)
93 PF07745 Glyco_hydro_53: Glyco 58.6 1E+02 0.0022 32.5 11.2 131 209-377 27-166 (332)
94 PRK05301 pyrroloquinoline quin 58.5 25 0.00055 37.4 6.8 58 200-282 43-100 (378)
95 PRK06855 aminotransferase; Val 58.3 26 0.00057 38.0 7.1 26 250-275 184-209 (433)
96 PRK09265 aminotransferase AlaT 57.8 30 0.00064 37.0 7.3 25 251-275 182-206 (404)
97 PRK06552 keto-hydroxyglutarate 57.4 41 0.0009 33.1 7.6 118 204-335 23-164 (213)
98 PRK07366 succinyldiaminopimela 57.3 19 0.00042 38.1 5.7 25 250-274 178-202 (388)
99 PRK09276 LL-diaminopimelate am 57.0 42 0.00092 35.4 8.3 25 250-274 179-203 (385)
100 PRK09505 malS alpha-amylase; R 56.4 34 0.00074 39.7 7.8 79 205-284 229-318 (683)
101 TIGR02109 PQQ_syn_pqqE coenzym 55.4 32 0.00069 36.3 6.9 58 200-282 34-91 (358)
102 PRK08068 transaminase; Reviewe 54.8 23 0.00051 37.5 5.9 25 250-274 180-204 (389)
103 PLN00175 aminotransferase fami 54.4 32 0.0007 37.0 6.9 26 250-275 200-225 (413)
104 cd06600 GH31_MGAM-like This fa 54.3 1E+02 0.0022 32.1 10.4 106 201-322 19-146 (317)
105 PRK08363 alanine aminotransfer 53.8 31 0.00067 36.7 6.6 25 251-275 180-204 (398)
106 TIGR03542 DAPAT_plant LL-diami 52.8 80 0.0017 33.7 9.6 26 250-275 186-211 (402)
107 PRK08960 hypothetical protein; 52.7 26 0.00057 37.1 5.8 26 250-275 178-203 (387)
108 PRK07324 transaminase; Validat 52.6 41 0.00088 35.6 7.2 25 251-275 167-191 (373)
109 PF01212 Beta_elim_lyase: Beta 52.1 44 0.00095 34.5 7.1 59 201-274 104-162 (290)
110 PF01261 AP_endonuc_2: Xylose 51.9 11 0.00024 35.5 2.5 63 205-277 70-132 (213)
111 TIGR01531 glyc_debranch glycog 51.9 44 0.00096 41.6 7.9 82 205-293 131-223 (1464)
112 PRK10658 putative alpha-glucos 51.4 1.1E+02 0.0025 35.4 11.0 119 187-324 264-407 (665)
113 PF03198 Glyco_hydro_72: Gluca 51.2 1.3E+02 0.0027 31.6 10.1 128 205-384 52-181 (314)
114 PRK05942 aspartate aminotransf 51.0 44 0.00096 35.5 7.2 26 250-275 183-208 (394)
115 TIGR02103 pullul_strch alpha-1 50.5 50 0.0011 39.5 8.0 28 257-285 404-431 (898)
116 PLN02607 1-aminocyclopropane-1 50.2 1E+02 0.0022 33.8 10.0 63 197-275 175-238 (447)
117 TIGR03540 DapC_direct LL-diami 49.8 58 0.0013 34.4 7.8 25 250-274 177-201 (383)
118 cd06594 GH31_glucosidase_YihQ 49.6 46 0.00099 34.8 6.9 128 186-321 6-151 (317)
119 cd06595 GH31_xylosidase_XylS-l 49.4 1.9E+02 0.0041 29.7 11.4 117 186-322 7-146 (292)
120 PRK09856 fructoselysine 3-epim 48.2 59 0.0013 32.6 7.3 62 204-277 88-149 (275)
121 COG0084 TatD Mg-dependent DNas 48.1 2E+02 0.0043 29.3 10.9 148 256-423 16-177 (256)
122 PRK06358 threonine-phosphate d 47.9 78 0.0017 33.2 8.4 26 250-275 154-179 (354)
123 cd06591 GH31_xylosidase_XylS X 47.7 1.3E+02 0.0029 31.3 10.0 116 187-321 7-144 (319)
124 TIGR01265 tyr_nico_aTase tyros 47.5 42 0.0009 35.9 6.4 26 250-275 182-207 (403)
125 PRK10076 pyruvate formate lyas 47.3 80 0.0017 31.1 7.8 66 204-274 143-210 (213)
126 PF01301 Glyco_hydro_35: Glyco 46.7 85 0.0018 32.9 8.3 78 183-277 4-83 (319)
127 PRK06108 aspartate aminotransf 46.4 52 0.0011 34.5 6.8 25 251-275 172-196 (382)
128 PRK09275 aspartate aminotransf 45.8 59 0.0013 36.6 7.4 26 250-275 254-281 (527)
129 PTZ00376 aspartate aminotransf 45.4 1.1E+02 0.0024 32.6 9.3 26 250-275 189-214 (404)
130 TIGR01182 eda Entner-Doudoroff 44.9 54 0.0012 32.1 6.1 81 204-287 18-118 (204)
131 COG0134 TrpC Indole-3-glycerol 44.9 38 0.00083 34.3 5.1 74 253-333 139-212 (254)
132 cd06603 GH31_GANC_GANAB_alpha 43.4 1.8E+02 0.0039 30.6 10.2 111 201-323 19-147 (339)
133 cd06589 GH31 The enzymes of gl 43.2 48 0.001 33.5 5.7 79 187-277 7-86 (265)
134 COG1167 ARO8 Transcriptional r 42.9 1E+02 0.0023 33.8 8.7 112 131-281 149-270 (459)
135 PRK06207 aspartate aminotransf 42.2 74 0.0016 34.1 7.3 26 250-275 191-216 (405)
136 PRK06015 keto-hydroxyglutarate 41.0 54 0.0012 32.1 5.4 81 204-287 14-114 (201)
137 PRK00278 trpC indole-3-glycero 40.7 1.2E+02 0.0025 30.8 8.0 49 211-283 125-173 (260)
138 PRK02308 uvsE putative UV dama 40.6 4.4E+02 0.0095 27.4 12.6 81 233-334 65-156 (303)
139 PF13380 CoA_binding_2: CoA bi 40.5 1E+02 0.0022 27.1 6.7 101 144-274 3-106 (116)
140 PRK05718 keto-hydroxyglutarate 40.4 66 0.0014 31.7 6.0 81 203-286 24-124 (212)
141 COG0366 AmyA Glycosidases [Car 40.4 77 0.0017 34.5 7.2 73 205-284 28-103 (505)
142 PF13204 DUF4038: Protein of u 40.2 1.7E+02 0.0037 30.1 9.3 115 204-336 28-156 (289)
143 TIGR01866 cas_Csn2 CRISPR-asso 39.7 68 0.0015 31.8 5.9 74 180-275 119-196 (216)
144 PRK01060 endonuclease IV; Prov 39.4 1.1E+02 0.0024 30.8 7.7 59 193-273 5-63 (281)
145 TIGR03801 asp_4_decarbox aspar 39.4 96 0.0021 34.9 7.8 25 250-274 253-279 (521)
146 PRK07568 aspartate aminotransf 39.3 99 0.0021 32.7 7.7 25 251-275 176-200 (397)
147 COG1523 PulA Type II secretory 39.2 1.5E+02 0.0033 34.6 9.4 111 212-324 206-350 (697)
148 COG2100 Predicted Fe-S oxidore 39.0 1.7E+02 0.0037 30.9 8.7 104 138-275 157-260 (414)
149 PRK13957 indole-3-glycerol-pho 38.7 43 0.00093 33.8 4.4 73 253-332 134-206 (247)
150 PF05913 DUF871: Bacterial pro 38.6 62 0.0014 34.5 5.9 54 204-277 12-67 (357)
151 PF07488 Glyco_hydro_67M: Glyc 37.9 3E+02 0.0065 28.9 10.2 119 181-327 13-150 (328)
152 PRK08361 aspartate aminotransf 37.5 91 0.002 33.0 7.1 26 250-275 179-204 (391)
153 TIGR03537 DapC succinyldiamino 37.4 40 0.00087 35.2 4.2 26 250-275 149-174 (350)
154 PRK07550 hypothetical protein; 37.3 64 0.0014 34.1 5.8 25 251-275 177-201 (386)
155 PLN02450 1-aminocyclopropane-1 37.3 48 0.001 36.5 5.0 26 250-275 204-229 (468)
156 TIGR01418 PEP_synth phosphoeno 36.9 6.4E+02 0.014 30.0 14.3 143 184-358 590-761 (782)
157 TIGR00542 hxl6Piso_put hexulos 36.9 53 0.0012 33.1 4.9 61 205-277 93-153 (279)
158 COG1306 Uncharacterized conser 35.3 70 0.0015 33.2 5.3 153 205-372 76-254 (400)
159 cd06601 GH31_lyase_GLase GLase 34.9 3.4E+02 0.0073 28.6 10.6 109 193-323 12-121 (332)
160 PRK10426 alpha-glucosidase; Pr 34.9 2.8E+02 0.006 32.1 10.7 127 186-320 204-347 (635)
161 cd06604 GH31_glucosidase_II_Ma 34.8 2.7E+02 0.0058 29.2 9.9 110 201-323 19-147 (339)
162 TIGR03538 DapC_gpp succinyldia 34.7 48 0.001 35.2 4.3 26 250-275 178-203 (393)
163 PRK09148 aminotransferase; Val 34.5 64 0.0014 34.5 5.3 25 250-274 178-202 (405)
164 PF01244 Peptidase_M19: Membra 34.3 20 0.00044 37.5 1.4 91 250-363 210-307 (320)
165 PTZ00372 endonuclease 4-like p 33.7 55 0.0012 35.6 4.5 80 192-277 303-391 (413)
166 PF14488 DUF4434: Domain of un 33.6 2.8E+02 0.0061 26.1 8.9 70 202-279 16-87 (166)
167 PF03851 UvdE: UV-endonuclease 33.3 68 0.0015 33.0 4.9 42 233-274 62-104 (275)
168 CHL00130 rbcS ribulose-1,5-bis 33.1 1.9E+02 0.0041 26.5 7.1 76 246-334 6-84 (138)
169 PF05089 NAGLU: Alpha-N-acetyl 33.0 50 0.0011 34.8 4.0 134 201-338 14-182 (333)
170 cd06599 GH31_glycosidase_Aec37 32.9 3.7E+02 0.008 27.9 10.5 100 205-322 28-154 (317)
171 COG2355 Zn-dependent dipeptida 32.9 3.7E+02 0.0081 28.2 10.3 131 207-360 150-293 (313)
172 PRK13210 putative L-xylulose 5 32.7 5.1E+02 0.011 25.8 13.8 131 206-382 16-150 (284)
173 COG1168 MalY Bifunctional PLP- 32.5 46 0.00099 35.6 3.6 28 250-277 171-199 (388)
174 PRK13355 bifunctional HTH-doma 32.4 68 0.0015 35.7 5.2 26 250-275 294-319 (517)
175 TIGR02668 moaA_archaeal probab 32.4 94 0.002 31.8 5.9 58 200-282 37-95 (302)
176 COG2100 Predicted Fe-S oxidore 32.3 1.2E+02 0.0026 32.0 6.4 94 144-270 190-284 (414)
177 PF01565 FAD_binding_4: FAD bi 32.2 52 0.0011 29.3 3.6 28 255-284 9-36 (139)
178 PRK07085 diphosphate--fructose 32.0 2.9E+02 0.0062 31.4 10.0 102 193-332 136-245 (555)
179 KOG0256 1-aminocyclopropane-1- 31.8 2.3E+02 0.0049 31.0 8.5 67 195-277 199-267 (471)
180 cd02875 GH18_chitobiase Chitob 31.6 1.7E+02 0.0037 31.1 7.8 82 260-378 67-149 (358)
181 PF12971 NAGLU_N: Alpha-N-acet 31.5 2.1E+02 0.0046 23.8 6.8 44 111-162 19-62 (86)
182 PRK07114 keto-hydroxyglutarate 30.9 1E+02 0.0023 30.6 5.7 81 204-287 25-129 (222)
183 PRK06836 aspartate aminotransf 30.9 1.3E+02 0.0029 31.9 7.0 25 250-274 181-211 (394)
184 PLN02951 Molybderin biosynthes 30.1 1.8E+02 0.004 31.1 7.8 59 201-283 88-147 (373)
185 PRK09082 methionine aminotrans 30.0 75 0.0016 33.7 4.9 25 251-275 177-201 (386)
186 cd06597 GH31_transferase_CtsY 29.9 4.8E+02 0.01 27.5 10.8 132 186-323 6-174 (340)
187 smart00518 AP2Ec AP endonuclea 29.9 1.9E+02 0.0041 28.8 7.6 51 208-274 12-62 (273)
188 cd00765 Pyrophosphate_PFK Phos 29.6 3.8E+02 0.0083 30.4 10.4 104 193-332 138-247 (550)
189 PRK08056 threonine-phosphate d 29.5 1.7E+02 0.0036 30.6 7.4 25 251-275 156-180 (356)
190 PRK07683 aminotransferase A; V 29.5 79 0.0017 33.5 4.9 25 251-275 175-199 (387)
191 TIGR02477 PFKA_PPi diphosphate 28.4 3.9E+02 0.0085 30.2 10.2 104 193-332 133-242 (539)
192 PRK13209 L-xylulose 5-phosphat 28.1 6.1E+02 0.013 25.3 14.2 129 207-381 22-154 (283)
193 PRK13209 L-xylulose 5-phosphat 28.0 79 0.0017 31.8 4.4 61 205-277 98-158 (283)
194 PRK08175 aminotransferase; Val 27.9 1.8E+02 0.004 30.8 7.4 26 250-275 177-202 (395)
195 cd07201 cPLA2_Grp-IVB-IVD-IVE- 27.8 69 0.0015 36.0 4.1 94 182-280 290-433 (541)
196 cd01299 Met_dep_hydrolase_A Me 27.3 2.9E+02 0.0063 28.4 8.7 63 204-277 118-180 (342)
197 PRK13210 putative L-xylulose 5 27.3 89 0.0019 31.3 4.7 61 205-277 93-153 (284)
198 COG0402 SsnA Cytosine deaminas 27.2 3.9E+02 0.0084 28.8 9.9 150 256-431 128-284 (421)
199 PRK05764 aspartate aminotransf 26.7 94 0.002 32.8 4.9 25 251-275 178-202 (393)
200 PF01081 Aldolase: KDPG and KH 26.4 63 0.0014 31.5 3.2 118 203-335 17-157 (196)
201 smart00633 Glyco_10 Glycosyl h 26.1 1.3E+02 0.0028 30.1 5.6 64 250-327 9-72 (254)
202 COG1313 PflX Uncharacterized F 25.9 1.3E+02 0.0028 31.3 5.4 59 208-275 273-333 (335)
203 PLN03059 beta-galactosidase; P 25.6 1.2E+03 0.027 27.9 14.1 81 180-277 36-118 (840)
204 cd06564 GH20_DspB_LnbB-like Gl 25.2 89 0.0019 32.7 4.3 64 155-223 13-99 (326)
205 PF02679 ComA: (2R)-phospho-3- 24.9 1.4E+02 0.003 30.2 5.3 25 253-277 109-133 (244)
206 TIGR03849 arch_ComA phosphosul 24.9 2.3E+02 0.0049 28.6 6.8 50 206-277 71-120 (237)
207 cd02874 GH18_CFLE_spore_hydrol 24.7 4.7E+02 0.01 26.8 9.6 90 259-380 47-139 (313)
208 COG1217 TypA Predicted membran 23.9 41 0.00089 37.1 1.5 22 264-285 47-81 (603)
209 PRK09989 hypothetical protein; 23.9 1.2E+02 0.0025 30.3 4.7 78 192-288 173-252 (258)
210 PRK05967 cystathionine beta-ly 23.7 1E+02 0.0022 33.3 4.6 24 252-275 161-184 (395)
211 PTZ00372 endonuclease 4-like p 23.7 3.7E+02 0.008 29.4 8.7 52 208-275 143-194 (413)
212 KOG0462 Elongation factor-type 23.6 59 0.0013 36.6 2.6 31 255-285 92-138 (650)
213 PLN02251 pyrophosphate-depende 23.5 6.8E+02 0.015 28.6 11.0 153 144-332 101-271 (568)
214 TIGR00542 hxl6Piso_put hexulos 23.5 7.5E+02 0.016 24.7 14.8 131 206-382 16-150 (279)
215 PF05213 Corona_NS2A: Coronavi 23.4 1.1E+02 0.0023 30.3 4.0 101 150-287 19-123 (248)
216 PRK09997 hydroxypyruvate isome 23.3 82 0.0018 31.4 3.5 74 190-277 69-144 (258)
217 PF14542 Acetyltransf_CG: GCN5 23.1 82 0.0018 25.7 2.8 39 252-293 37-75 (78)
218 PF03102 NeuB: NeuB family; I 22.8 80 0.0017 31.8 3.2 51 253-339 52-102 (241)
219 TIGR01285 nifN nitrogenase mol 22.8 5.6E+02 0.012 28.0 10.1 57 206-284 77-139 (432)
220 PLN02672 methionine S-methyltr 22.5 1.1E+02 0.0024 37.5 4.8 61 215-275 795-867 (1082)
221 TIGR03586 PseI pseudaminic aci 21.9 3.2E+02 0.007 28.8 7.7 70 204-277 15-97 (327)
222 PRK13505 formate--tetrahydrofo 21.8 2.5E+02 0.0053 31.9 7.0 48 206-275 359-406 (557)
223 PRK14465 ribosomal RNA large s 21.8 3.1E+02 0.0066 29.2 7.5 73 185-277 219-293 (342)
224 PRK01060 endonuclease IV; Prov 21.7 1.6E+02 0.0035 29.5 5.3 81 193-279 175-262 (281)
225 PRK14467 ribosomal RNA large s 21.5 1.6E+02 0.0035 31.3 5.4 59 204-276 266-324 (348)
226 PF09183 DUF1947: Domain of un 21.3 56 0.0012 26.1 1.4 23 199-221 1-24 (65)
227 KOG0053 Cystathionine beta-lya 21.1 1.4E+02 0.0029 32.6 4.7 54 201-276 145-198 (409)
228 TIGR02717 AcCoA-syn-alpha acet 20.9 7.2E+02 0.016 27.2 10.5 113 144-274 10-125 (447)
229 cd01301 rDP_like renal dipepti 20.8 1.4E+02 0.0031 31.1 4.8 130 206-360 154-296 (309)
230 COG5587 Uncharacterized conser 20.6 1.3E+02 0.0029 28.8 3.9 50 327-380 104-155 (228)
231 PRK09140 2-dehydro-3-deoxy-6-p 20.5 4.7E+02 0.01 25.5 8.0 121 204-335 20-160 (206)
232 PF13394 Fer4_14: 4Fe-4S singl 20.5 1.1E+02 0.0024 26.3 3.4 58 200-275 26-85 (119)
233 cd04726 KGPDC_HPS 3-Keto-L-gul 20.5 3.1E+02 0.0068 25.9 6.8 48 211-283 69-119 (202)
234 PF06080 DUF938: Protein of un 20.4 57 0.0012 32.0 1.6 30 254-283 168-197 (204)
235 PRK13840 sucrose phosphorylase 20.4 2.6E+02 0.0056 31.3 6.8 64 204-285 18-91 (495)
236 KOG0464 Elongation factor G [T 20.2 82 0.0018 34.2 2.8 29 257-285 74-115 (753)
237 PRK13361 molybdenum cofactor b 20.1 2.4E+02 0.0051 29.4 6.3 60 200-282 42-101 (329)
238 COG1082 IolE Sugar phosphate i 20.1 1.8E+02 0.004 28.7 5.3 79 191-279 171-253 (274)
239 PRK09427 bifunctional indole-3 20.1 1.3E+02 0.0029 33.1 4.5 42 252-293 141-182 (454)
No 1
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.5e-107 Score=837.85 Aligned_cols=515 Identities=39% Similarity=0.700 Sum_probs=425.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCC-ceecccceEEEcCceEEECCc-e--EEEEcCCCCCchhHHHHHHHHHHHH
Q 008945 13 GAFWVLNLVLFLVQVVGIKGAHGIGEHGV-RIWPMPLSVSHGHKSLYVGKD-F--KIMSQGSKYKDASGILKDGFSRFLA 88 (548)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~l~P~P~~v~~~~~~~~l~~~-~--~i~~~~~~~~~~~~~l~~~~~~~~~ 88 (548)
+++.++.|+.+.+.+....+........+ .+||.|+.+..++. +.++ + ++.++-. ......++.++++||.+
T Consensus 5 ~~lL~l~l~~~~~~v~l~~~~~~~~~~p~~~lWP~P~~~~~~~~---l~~~i~~~~~~~~~~-~~~~~~il~a~~~ry~~ 80 (542)
T KOG2499|consen 5 GSLLLLSLLSFALGVTLTLADDFAIRAPVGALWPLPRTFSCGDE---LAPEIFYSQIDINLG-AGKGCAILRAAFDRYMN 80 (542)
T ss_pred HHHHHHHHHHHHHHhheeecccccccCCccccccCCcccccccc---ccccccceeeccccc-CCcchhHHHHHHHHHhh
Confidence 44444555555555554444443333333 69999999998876 2221 1 2222111 12245899999999999
Q ss_pred HhhccccccC--CCCcccccccccceEEEEccCC--ccccCCCCCCeEEEeeCCCCCeEEEEEecCchhhHHHHHHHHHH
Q 008945 89 VVKGAHVVDG--DTSKLDQSRVLQGLNVFISSTK--DELQYGIDESYKLLVPSPDKPTYAHLEAQTVYGALHGLQTLSQL 164 (548)
Q Consensus 89 ~~~~~~~~~~--~~~~~~~~~~~~~~~i~v~~~~--~~l~~~~~E~Y~L~i~~~~~~~~i~I~a~~~~G~~~gl~Tl~QL 164 (548)
+++.+..... .+...........+.++++... ..+..+.||+|+|.|+.+. ..+.|.|++.+||+||++||+||
T Consensus 81 ~i~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~c~s~p~l~~~dEsYtL~V~~~~--~~a~i~A~tvwGAlrglETfSqL 158 (542)
T KOG2499|consen 81 IIFGRVEWDPPLLSFHVKLGGEAALITLTVTVECPSLPTLHGVDESYTLVVSTTA--TFAVILANTVWGALRGLETFSQL 158 (542)
T ss_pred hhhcccccCCccceeeeeccceEEEEEEeecCCCCCcCcccccccceEEEeecCc--ceEEEeehhHHHHHHHHHHHHHH
Confidence 9876421111 0000000001111223333222 2233456999999998542 35999999999999999999999
Q ss_pred HhhccCCCeEEeeccceEEecCCCCccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCC
Q 008945 165 CQFNFSSRVIEILMTPWIINDQPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW 244 (548)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~I~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~ 244 (548)
+..+..++.+.+ ....|+|+|+|+|||+|||+||||+|++.||++||.||+.|+|+||||++|+||||+|++++|+|.
T Consensus 159 v~~d~~~~~~~~--~~~~I~D~PrF~hRGlLlDTSRhylpv~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~ 236 (542)
T KOG2499|consen 159 VWGDSIGGLFMI--ATAYIQDKPRFGHRGLLLDTSRHYLPVKVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELH 236 (542)
T ss_pred heeccCCceEEe--eeeeEeccCCCcccceEEecccceecHHHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhh
Confidence 998865554433 247999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHhhCCCCC-C--CCCC----CCCCCCCChHHHHHHHH
Q 008945 245 -DGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLW-P--SKDC----QEPLDVSNEFTFKVIDG 316 (548)
Q Consensus 245 -~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~-~--~~~~----~~~ld~~~~~t~~~l~~ 316 (548)
+|||+..+.||++|++++|+||+.|||+|+||||+|||+++|..+||+|. + +..| ..+|||+++.+|+|+++
T Consensus 237 ~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD~PgHt~sWg~g~~~fl~p~~~~~~~~~~~gplnP~~n~tydvls~ 316 (542)
T KOG2499|consen 237 RKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFDTPGHTGSWGPGYPDFLTPCWSSFEVQPPFGPLNPTNNHTYDVLSE 316 (542)
T ss_pred hcCCCCcceeecHHHHHHHHHHHHhccceeeecccCCcccccccCCCCcccCCcccccccCCCCcCCCCCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999962 2 2222 34799999999999999
Q ss_pred HHHHHhhhccCceeEecCCCCCCCCCCCCHHHHHHHHHCCCChh--hHHHHHHHHHHHHHHHcCCeEEEcccchhccCCC
Q 008945 317 ILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNES--QAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNK 394 (548)
Q Consensus 317 v~~E~~~lF~~~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~~~--~l~~~f~~~~~~~l~~~g~~~~~W~d~~~~~~~~ 394 (548)
++.|+.+.||+.+||+|||||...||+++|++|+||+++|.... +++.+|+++..+++.+.+++++.|+|.+++. .+
T Consensus 317 i~~dv~evFp~~~~HlGGDEV~~~CW~s~~~Iq~fM~~kGfg~~~~~~~~~~~~~~~~i~~s~~~~~I~Wqevf~n~-~~ 395 (542)
T KOG2499|consen 317 IFEDVSEVFPDEFFHLGGDEVSTPCWKSNPEIQDFMRKKGFGLDTKSLERLYIQFLLDILNSWNKTVIVWQEVFDNK-RK 395 (542)
T ss_pred HHHHHHHhCcHHHeecCCceeecccccCChHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCceEEEeehhcccc-cc
Confidence 99999999999999999999999999999999999999998654 6899999999999999999999999999763 45
Q ss_pred CCCCeEEEecCCCc---HHHHHHHhcCcEEEeCCCccccccC--CcchhhhccCCcCCCCCchhhhccccceeeeeecCC
Q 008945 395 LSPKTVVHNWLGGG---VAQRVVAAGLRCIVSNQDKWYLDHL--DTTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWGET 469 (548)
Q Consensus 395 l~~~~iv~~W~~~~---~~~~~~~~Gy~vI~s~~~~~Yld~~--~~~w~~~Y~~~p~~~~~~~~~~~~ilG~~~~lW~E~ 469 (548)
+++++|||.|+... ...+.+.+||++|+|++.+||||++ +.+|+++|..+|..+..+.++++.|+|||+|||||+
T Consensus 396 i~p~tiiq~W~~~~~~~~~~k~v~~~~~~ivs~s~~wYLd~~~~g~dw~~~Y~~~p~~~~g~~~~k~lVlGGE~cmWgE~ 475 (542)
T KOG2499|consen 396 IDPRTIIQIWKIGTWYPKELKIVTKGYRFIVSNSAAWYLDHIGYGSDWRKVYNTEPLSGMGTPEQKKLVLGGEVCMWGEY 475 (542)
T ss_pred CCCCceeeeeccCCccHHHHHHHhccCceEEEeccceEeeccccCCChhheeeccccccCCCHHHhhheecceeeeehhh
Confidence 68999999998754 6778889999999999999999965 568999999999999998888999999999999999
Q ss_pred CCCcchhhhhhhhHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008945 470 VDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGIAAAPLAADTPLTQPGRSAPLEPGSCY 546 (548)
Q Consensus 470 ~~~~~~~~~~~PR~~A~AE~~Ws~~~~~~~~~~~~~~Rl~~~~~~l~~~Gi~~~p~~~~~~~~~~~~~~~~~p~~c~ 546 (548)
+|..+++.++|||++|+|||+||.+.. .+..++.+||..|||||.+|||.++|+ +|.||+++|+.|.
T Consensus 476 vD~t~L~~RlWPRAsA~AERLWS~~~~--~~~~~A~~Rl~~~RcrLv~RGi~A~p~--------~p~~C~~~~~~c~ 542 (542)
T KOG2499|consen 476 VDNTNLESRLWPRASAAAERLWSNKKV--SRLLDAYPRLHLFRCRLVARGIGAQPV--------QPGWCLQEEGECP 542 (542)
T ss_pred ccccccccccccchhHHHHHhhccccc--chHHHHHHHHHHHHHHHHhcCCCcCCC--------CCcccccCCCCCC
Confidence 999999999999999999999995444 589999999999999999999999999 8999999999995
No 2
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=100.00 E-value=1.5e-88 Score=710.82 Aligned_cols=329 Identities=46% Similarity=0.813 Sum_probs=306.0
Q ss_pred CccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCC-cCCCCCCCCCCHHHHHHHHHHHH
Q 008945 189 FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAYSTSERYTMADAAEIVSYAQ 267 (548)
Q Consensus 189 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~-~Ga~~~~~~YT~~di~elv~yA~ 267 (548)
|+|||+|||+||||+|+++||++||.||.+|||+||||||||||||||+++||+|+ .|+|+.+++||++|+++||+||+
T Consensus 1 f~~RG~mlDvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~ 80 (348)
T cd06562 1 FPHRGLLLDTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYAR 80 (348)
T ss_pred CCccceeeeccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred HcCCEEEEccCCCchhhHHHhhCCCCCCC----------CCCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEecCCCC
Q 008945 268 KRGINVLAELDVPGHALSWGKGYPSLWPS----------KDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEV 337 (548)
Q Consensus 268 ~rgI~VIPEID~PGH~~a~~~~~p~l~~~----------~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHiGgDEv 337 (548)
+|||+||||||+|||+.+++++||++... ..+...|||++|+|++|+++|++|++++||++||||||||+
T Consensus 81 ~rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDE~ 160 (348)
T cd06562 81 LRGIRVIPEIDTPGHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDKYFHLGGDEV 160 (348)
T ss_pred HcCCEEEEeccCchhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHhcCCcceEeecCCC
Confidence 99999999999999999999999998321 11234799999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHCCCChh-hHHHHHHHHHHHHHHHcCCeEEEcccchhccCCCCCCCeEEEecCCCcHHHHHHHh
Q 008945 338 NTSCWTLTPHVSKWLKEHSMNES-QAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNWLGGGVAQRVVAA 416 (548)
Q Consensus 338 ~~~~w~~~p~~~~~~~~~g~~~~-~l~~~f~~~~~~~l~~~g~~~~~W~d~~~~~~~~l~~~~iv~~W~~~~~~~~~~~~ 416 (548)
...||.++|.|+++|+++|++.. +++.+|++++.++++++||++++|+|++...+..++++++|+.|.+...+.+++++
T Consensus 161 ~~~~w~~~p~~~~~m~~~g~~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~~~~~~~~~~~~~iv~~W~~~~~~~~~~~~ 240 (348)
T cd06562 161 NFNCWNSNPEIQKFMKKNNGTDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDNGVYLLPKDTIVQVWGGSDELKNVLAA 240 (348)
T ss_pred CCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEeeecccCCCccCCCCeEEEECCCcHHHHHHHHC
Confidence 99999999999999999997654 99999999999999999999999999987543468999999999998889999999
Q ss_pred cCcEEEeCCCccccccCC-------cchhhhccCCcCCCCCchhhhccccceeeeeecCCCCCcchhhhhhhhHHHHHHH
Q 008945 417 GLRCIVSNQDKWYLDHLD-------TTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAER 489 (548)
Q Consensus 417 Gy~vI~s~~~~~Yld~~~-------~~w~~~Y~~~p~~~~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~PR~~A~AE~ 489 (548)
||+||+|+++++|||+++ .+|+.+|.++|.....++...++|+|+|+|||+|.+++.++++++|||++|+||+
T Consensus 241 G~~vI~s~~~~~Yld~~~~~~~~~~~~~~~~y~~~p~~~~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~PR~~a~AE~ 320 (348)
T cd06562 241 GYKVILSSYDFWYLDCGFGGWVGPGNDWCDPYKNWPRIYSGTPEQKKLVLGGEACMWGEQVDDTNLDQRLWPRASALAER 320 (348)
T ss_pred CCCEEEeCCCcEEEeecCCCCCCCCCcHhhhhcCCCCCCCCChhhcccEEEEEEEeeeeeeCccceeehhhhhHHHHHHH
Confidence 999999999999999864 3799999999876655556678999999999999999889999999999999999
Q ss_pred hcCCCCCCccCHHHHHHHHHHHHHHHHHcC
Q 008945 490 LWTPYDKLAKEAKQVTGRLAHFRCLLNQRG 519 (548)
Q Consensus 490 ~Ws~~~~~~~~~~~~~~Rl~~~~~~l~~~G 519 (548)
+|+++.. .++++|..||..|++||.+||
T Consensus 321 ~W~~~~~--~~~~~f~~Rl~~~~~~l~~~g 348 (348)
T cd06562 321 LWSGPSD--TNLTDAEPRLVEFRCRLVRRG 348 (348)
T ss_pred hhCCCcC--CCHHHHHHHHHHHHHHHHhCc
Confidence 9999877 489999999999999999998
No 3
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.4e-84 Score=683.68 Aligned_cols=315 Identities=34% Similarity=0.628 Sum_probs=291.2
Q ss_pred CccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCC-cCCCCC----------------C
Q 008945 189 FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAYST----------------S 251 (548)
Q Consensus 189 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~-~Ga~~~----------------~ 251 (548)
|+|||+|||+||||+|+++||++||.||.+|||+||||||||||||||+++||+|+ .|+++. +
T Consensus 1 f~~RG~mLD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd06563 1 FSWRGLMLDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYG 80 (357)
T ss_pred CCccceeeeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccC
Confidence 89999999999999999999999999999999999999999999999999999998 788775 5
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHhhCCCCCCCC----------CCCCCCCCCChHHHHHHHHHHHHH
Q 008945 252 ERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSK----------DCQEPLDVSNEFTFKVIDGILSDF 321 (548)
Q Consensus 252 ~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~~~----------~~~~~ld~~~~~t~~~l~~v~~E~ 321 (548)
++||++|+++||+||++|||+||||||+|||+.+++++||+|.... ...++|||++|+|++|+++|++|+
T Consensus 81 ~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~ 160 (357)
T cd06563 81 GFYTQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEV 160 (357)
T ss_pred ceECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999994321 134579999999999999999999
Q ss_pred hhhccCceeEecCCCCCCCCCCCCHHHHHHHHHCCCChh-hHHHHHHHHHHHHHHHcCCeEEEcccchhccCCCCCCCeE
Q 008945 322 SKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNES-QAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTV 400 (548)
Q Consensus 322 ~~lF~~~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~~~-~l~~~f~~~~~~~l~~~g~~~~~W~d~~~~~~~~l~~~~i 400 (548)
+++||++||||||||+...||+++|.|+++|+++|++.. +++.+|++++.++++++|+++++|+|++.. .++++++
T Consensus 161 ~~lF~~~~iHiGgDE~~~~~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~~~i~W~d~~~~---~l~~~~i 237 (357)
T cd06563 161 AELFPSPYIHIGGDEVPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGKKMIGWDEILEG---GLPPNAT 237 (357)
T ss_pred HHhCCCCeEEEeccccCCcccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCEEEEeeccccc---CCCCCcE
Confidence 999999999999999999999999999999999998654 899999999999999999999999999753 3899999
Q ss_pred EEecCCCcHHHHHHHhcCcEEEeCCCccccccCC-------------cchhhhccCCcCCCCCchhhhccccceeeeeec
Q 008945 401 VHNWLGGGVAQRVVAAGLRCIVSNQDKWYLDHLD-------------TTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWG 467 (548)
Q Consensus 401 v~~W~~~~~~~~~~~~Gy~vI~s~~~~~Yld~~~-------------~~w~~~Y~~~p~~~~~~~~~~~~ilG~~~~lW~ 467 (548)
|++|.+...+.+++++||++|+|++.++|||+.+ .+|+++|+++|......++..++|+|+|+|||+
T Consensus 238 v~~W~~~~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~~~~~~~~~~~y~~~P~~~~~~~~~~~~ilG~~~~lW~ 317 (357)
T cd06563 238 VMSWRGEDGGIKAAKQGYDVIMSPGQYLYLDYAQSKGPDEPASWAGFNTLEKVYSFEPVPGGLTPEQAKRILGVQANLWT 317 (357)
T ss_pred EEECCCchHHHHHHHCCCCEEEeCCCceEEecCCCCCCCCCccccCCCCHHHHhcCCCCCCCCChhHhcCEEEEEEEecc
Confidence 9999998888999999999999999999999864 368999999998876655678899999999999
Q ss_pred CCCCC-cchhhhhhhhHHHHHHHhcCCCCCCccCHHHHHHHH
Q 008945 468 ETVDA-SDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRL 508 (548)
Q Consensus 468 E~~~~-~~~~~~~~PR~~A~AE~~Ws~~~~~~~~~~~~~~Rl 508 (548)
|++.. +++++++|||++|+||++|++++. +++++|..||
T Consensus 318 E~~~~~~~~~~~~~PR~~a~AE~~W~~~~~--~~~~~f~~rl 357 (357)
T cd06563 318 EYIPTPERVEYMAFPRLLALAEVAWTPPEK--KDWEDFRKRL 357 (357)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhCCccC--CCHHHHHhhC
Confidence 99954 579999999999999999999876 4999999886
No 4
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.7e-84 Score=668.27 Aligned_cols=299 Identities=37% Similarity=0.739 Sum_probs=277.2
Q ss_pred CccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCC-cCCCCCCCCCCHHHHHHHHHHHH
Q 008945 189 FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAYSTSERYTMADAAEIVSYAQ 267 (548)
Q Consensus 189 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~-~Ga~~~~~~YT~~di~elv~yA~ 267 (548)
|+|||+|||+||||+|+++||++||.||.+|||+||||||||||||+|+++||+|+ .|+ .+++||++|+++||+||+
T Consensus 1 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~--~~~~yT~~di~elv~yA~ 78 (311)
T cd06570 1 FPWRGLLIDVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKAS--DGLYYTQEQIREVVAYAR 78 (311)
T ss_pred CCccCeEEecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCC--CCCccCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999998 564 568999999999999999
Q ss_pred HcCCEEEEccCCCchhhHHHhhCCCCCCCC----------CCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEecCCCC
Q 008945 268 KRGINVLAELDVPGHALSWGKGYPSLWPSK----------DCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEV 337 (548)
Q Consensus 268 ~rgI~VIPEID~PGH~~a~~~~~p~l~~~~----------~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHiGgDEv 337 (548)
+|||+||||||+|||+.+|+++||+|.... .....|||++|+|++|+++|++|++++||++||||||||+
T Consensus 79 ~rgI~vIPEId~PGH~~a~~~~ypel~~~~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~lF~~~~iHiGgDE~ 158 (311)
T cd06570 79 DRGIRVVPEIDVPGHASAIAVAYPELASGPGPYVIERGWGVFEPLLDPTNEETYTFLDNLFGEMAELFPDEYFHIGGDEV 158 (311)
T ss_pred HcCCEEEEeecCccchHHHHHhCHHhccCCCccccccccccCCCccCCCChhHHHHHHHHHHHHHHhCCCCceEeeccCC
Confidence 999999999999999999999999994321 1234699999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHCCCChh-hHHHHHHHHHHHHHHHcCCeEEEcccchhccCCCCCCCeEEEecCCCcHHHHHHHh
Q 008945 338 NTSCWTLTPHVSKWLKEHSMNES-QAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNWLGGGVAQRVVAA 416 (548)
Q Consensus 338 ~~~~w~~~p~~~~~~~~~g~~~~-~l~~~f~~~~~~~l~~~g~~~~~W~d~~~~~~~~l~~~~iv~~W~~~~~~~~~~~~ 416 (548)
...||.++|.|+++|+++|++.. +++.+|++++.++++++||++++|+|++. ..+++++||+.|.+.+.+.+++++
T Consensus 159 ~~~~W~~~p~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~Gk~~~~W~d~~~---~~l~~~~iv~~W~~~~~~~~~~~~ 235 (311)
T cd06570 159 DPKQWNENPRIQAFMKEHGLKDAAALQAYFNQRVEKILSKHGKKMIGWDEVLH---PDLPKNVVIQSWRGHDSLGEAAKA 235 (311)
T ss_pred CCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEeccccc---cCCCCCeEEEEeCCchHHHHHHHC
Confidence 99999999999999999998654 89999999999999999999999999874 468999999999988888999999
Q ss_pred cCcEEEeCCCccccccCCcchhhhccCCcCCCCCchhhhccccceeeeeecCCCCCcchhhhhhhhHHHHHHHhcCCCCC
Q 008945 417 GLRCIVSNQDKWYLDHLDTTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDK 496 (548)
Q Consensus 417 Gy~vI~s~~~~~Yld~~~~~w~~~Y~~~p~~~~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~PR~~A~AE~~Ws~~~~ 496 (548)
||++|+|++ +|||+.+ .+..+|+++|. |+|||+|||+|+++.+++++++|||++|+||++|++++.
T Consensus 236 G~~vI~s~~--~YlD~~~-~~~~~y~~~p~-----------ilG~~~~lW~E~v~~~~~~~~~~PR~~A~AE~~Ws~~~~ 301 (311)
T cd06570 236 GYQGILSTG--YYIDQPQ-PAAYHYRVDPM-----------ILGGEATMWAELVSEETIDSRLWPRTAAIAERLWSAQDV 301 (311)
T ss_pred CCCEEEech--hheeCCC-chhheeCCCCc-----------EEEEEEEEeecCcCHHHHHHHHhHHHHHHHHHhhCCCcC
Confidence 999999984 8999876 57888988875 999999999999988899999999999999999999877
Q ss_pred CccCHHHHHHHH
Q 008945 497 LAKEAKQVTGRL 508 (548)
Q Consensus 497 ~~~~~~~~~~Rl 508 (548)
+|+++|..||
T Consensus 302 --~~~~~~~~Rl 311 (311)
T cd06570 302 --RDEDDMYRRL 311 (311)
T ss_pred --CCHHHHHhhC
Confidence 4899999886
No 5
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=2e-82 Score=681.15 Aligned_cols=312 Identities=29% Similarity=0.493 Sum_probs=275.8
Q ss_pred cCCCCccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCC-cCCCC--------------
Q 008945 185 DQPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAYS-------------- 249 (548)
Q Consensus 185 D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~-~Ga~~-------------- 249 (548)
|+|||+|||+|||+||||+|+++||++||.||++|||+||||||||||||||+++||+|+ .|+++
T Consensus 1 D~Prf~~RGlmLDvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~ 80 (445)
T cd06569 1 DAPRFEYRGMHLDVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQL 80 (445)
T ss_pred CCCCCcccceeeeccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999 67762
Q ss_pred ---------CCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHhh----CCCCCCCC-------------------
Q 008945 250 ---------TSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKG----YPSLWPSK------------------- 297 (548)
Q Consensus 250 ---------~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~~----~p~l~~~~------------------- 297 (548)
.+++||++||++||+||++|||+||||||+|||+.+++++ ||+|...+
T Consensus 81 ~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~ 160 (445)
T cd06569 81 GSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQY 160 (445)
T ss_pred ccCcccCcccCCccCHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCccccccc
Confidence 2578999999999999999999999999999999999876 88873110
Q ss_pred -----CCCCCCCCCChHHHHHHHHHHHHHhhhc-----cCceeEecCCCCCCCCCCCCHHHH--HHHHHCCCCh-hhHHH
Q 008945 298 -----DCQEPLDVSNEFTFKVIDGILSDFSKVF-----KYKFVHLGGDEVNTSCWTLTPHVS--KWLKEHSMNE-SQAYQ 364 (548)
Q Consensus 298 -----~~~~~ld~~~~~t~~~l~~v~~E~~~lF-----~~~~iHiGgDEv~~~~w~~~p~~~--~~~~~~g~~~-~~l~~ 364 (548)
...++|||++|+||+|+++||+|++++| |++||||||||+...||.+||.|+ ++|+++|++. .+++.
T Consensus 161 ~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~~lF~~~g~P~~yiHiGGDEv~~~~W~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (445)
T cd06569 161 LSVQFYTDNVINPCMPSTYRFVDKVIDEIARMHQEAGQPLTTIHFGGDEVPEGAWGGSPACKAQLFAKEGSVKDVEDLKD 240 (445)
T ss_pred ccccccccccccCCchhHHHHHHHHHHHHHHHHhccCCCcceEEEeccccCCCcccCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 1235799999999999999999999999 679999999999999999999999 9999998865 49999
Q ss_pred HHHHHHHHHHHHcCCeEEEcccchhccCC-----CCCCCeEEEecCC-----CcHHHHHHHhcCcEEEeCCCccccccCC
Q 008945 365 YFVLQAQKIALLHGYEIVNWEETFNNFGN-----KLSPKTVVHNWLG-----GGVAQRVVAAGLRCIVSNQDKWYLDHLD 434 (548)
Q Consensus 365 ~f~~~~~~~l~~~g~~~~~W~d~~~~~~~-----~l~~~~iv~~W~~-----~~~~~~~~~~Gy~vI~s~~~~~Yld~~~ 434 (548)
+|++++.++++++|+++++|+|++...+. .++++++|++|++ ...+.+++++||+||+|++.++|||+.+
T Consensus 241 ~f~~~v~~~l~~~Gk~~i~W~e~~~~~~~~~~~~~~~~~~~v~~W~~~~~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~ 320 (445)
T cd06569 241 YFFERVSKILKAHGITLAGWEDGLLGKDTTNVDGFATPYVWNNVWGWGYWGGEDRAYKLANKGYDVVLSNATNLYFDFPY 320 (445)
T ss_pred HHHHHHHHHHHHcCCeEEEecccccCCCcccccccCCCCeEEEEccCCcccccHHHHHHHHCCCCEEEeCCCcEEEecCC
Confidence 99999999999999999999999875432 3678999999975 3467889999999999999999999852
Q ss_pred ---------------cchhhhccCCcCCC----------------------CCchhhhccccceeeeeecCCCCC-cchh
Q 008945 435 ---------------TTWEQFYMNEPLTN----------------------ITKSEQQKLVIGGEVCMWGETVDA-SDIQ 476 (548)
Q Consensus 435 ---------------~~w~~~Y~~~p~~~----------------------~~~~~~~~~ilG~~~~lW~E~~~~-~~~~ 476 (548)
.+|+++|+++|... ...++++++|+|+|+|||+|+++. ++++
T Consensus 321 ~~~~~~~g~~w~~~~~~~~~~y~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~e~~lWsE~v~~~~~l~ 400 (445)
T cd06569 321 EKHPEERGYYWAGRFVDTKKVFSFMPDNLYANAEVTRDGDPIDDTALNGKVRLTLEGPKNILGLQGQLWSETIRTDEQLE 400 (445)
T ss_pred CCCCCcCCcccccCCCCHHHhhccCCchhhccchhhcccCccccccccccccCChhHhcceeEEEEeeeccccCCHHHhH
Confidence 34677899888521 012356789999999999999975 5799
Q ss_pred hhhhhhHHHHHHHhcCCCCC
Q 008945 477 QTIWPRAAAAAERLWTPYDK 496 (548)
Q Consensus 477 ~~~~PR~~A~AE~~Ws~~~~ 496 (548)
+++|||++|+||++||+...
T Consensus 401 ~~~~PR~~A~AE~~Ws~~~~ 420 (445)
T cd06569 401 YMVFPRLLALAERAWHKAPW 420 (445)
T ss_pred HHhhhHHHHHHHHHhcCCcc
Confidence 99999999999999999665
No 6
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=100.00 E-value=6.6e-80 Score=639.98 Aligned_cols=296 Identities=32% Similarity=0.537 Sum_probs=267.8
Q ss_pred CccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCC-cCCC-----CCCCCCCHHHHHHH
Q 008945 189 FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAY-----STSERYTMADAAEI 262 (548)
Q Consensus 189 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~-~Ga~-----~~~~~YT~~di~el 262 (548)
|+|||+|||+||||+|+++||++||.||.+|||+||||||||||||+|+++||+|+ .|++ +.+++||++|+++|
T Consensus 1 f~~RG~mlD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~el 80 (329)
T cd06568 1 FAYRGLMLDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDI 80 (329)
T ss_pred CCccceeeeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999 6765 35789999999999
Q ss_pred HHHHHHcCCEEEEccCCCchhhHHHhhCCCCCCCCC----------CCCCCCCCChHHHHHHHHHHHHHhhhccCceeEe
Q 008945 263 VSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKD----------CQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHL 332 (548)
Q Consensus 263 v~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~~~~----------~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHi 332 (548)
|+||++|||+||||||+|||+.+++++||+|...+. ...+|||++|++++|+++|++|++++||+++|||
T Consensus 81 v~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~~~iHi 160 (329)
T cd06568 81 VAYAAERHITVVPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPGPYIHI 160 (329)
T ss_pred HHHHHHcCCEEEEecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 999999999999999999999999999999953221 1347999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHcCCeEEEcccchhccCCCCCCCeEEEecCCC---cH
Q 008945 333 GGDEVNTSCWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNWLGG---GV 409 (548)
Q Consensus 333 GgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~l~~~g~~~~~W~d~~~~~~~~l~~~~iv~~W~~~---~~ 409 (548)
||||+... ..+++.+|++++.++++++||++++|+|++. ..+++++||++|++. +.
T Consensus 161 GgDE~~~~------------------~~~~~~~f~~~~~~~v~~~Gk~~~~W~d~~~---~~l~~~~iv~~W~~~~~~~~ 219 (329)
T cd06568 161 GGDEAHST------------------PHDDYAYFVNRVRAIVAKYGKTPVGWQEIAR---ADLPAGTVAQYWSDRAPDAD 219 (329)
T ss_pred ecccCCCC------------------chHHHHHHHHHHHHHHHHCCCeEEEECcccc---cCCCCCeEEEECCCCCCchH
Confidence 99999753 1367899999999999999999999999874 358999999999986 67
Q ss_pred HHHHHHhcCcEEEeCCCccccccCC-------------cchhhhccCCcCCCCCchhhhccccceeeeeecCCCCCc-ch
Q 008945 410 AQRVVAAGLRCIVSNQDKWYLDHLD-------------TTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWGETVDAS-DI 475 (548)
Q Consensus 410 ~~~~~~~Gy~vI~s~~~~~Yld~~~-------------~~w~~~Y~~~p~~~~~~~~~~~~ilG~~~~lW~E~~~~~-~~ 475 (548)
+.+++++||++|+|+++++|||+.+ .+|+.+|+++|...... +..++|+|+|+|||+|++++. ++
T Consensus 220 ~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~~~~~~~~~~~y~~~P~~~~~~-~~~~~ilG~~~~lW~E~~~~~~~~ 298 (329)
T cd06568 220 AAAALDKGAKVILSPADKAYLDMKYDADSPLGLTWAGPVEVREAYDWDPAAYGPG-VPDEAILGVEAPLWTETIRNLDDL 298 (329)
T ss_pred HHHHHHCCCCEEEeCCCcEEEecCCCCCCCCCcccCCCCCHHHHeeeCCCCCCCc-chhhCEEEEEEeecccccCCHHHH
Confidence 8899999999999999999999853 36899999999876543 457799999999999999864 79
Q ss_pred hhhhhhhHHHHHHHhcCCCCCCccCHHHHHHHH
Q 008945 476 QQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRL 508 (548)
Q Consensus 476 ~~~~~PR~~A~AE~~Ws~~~~~~~~~~~~~~Rl 508 (548)
++++|||++|+||++|++++. +|+++|..||
T Consensus 299 ~~~~~PR~~a~AE~~Ws~~~~--~~~~~f~~rl 329 (329)
T cd06568 299 EYMAFPRLAGVAEIGWSPQEA--RDWDDYKVRL 329 (329)
T ss_pred HHHHHhHHHHHHHHHhCCCcC--CCHHHHHhhC
Confidence 999999999999999999886 4899999885
No 7
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-76 Score=629.65 Aligned_cols=391 Identities=29% Similarity=0.478 Sum_probs=345.0
Q ss_pred CCCCeEEEeeCCCCCeEEEEEecCchhhHHHHHHHHHHHh-hccCCCeEEeeccceEEecCCCCccccceecCCCCCCCh
Q 008945 127 IDESYKLLVPSPDKPTYAHLEAQTVYGALHGLQTLSQLCQ-FNFSSRVIEILMTPWIINDQPRFSFRGLLIDTSRHYQPL 205 (548)
Q Consensus 127 ~~E~Y~L~i~~~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~-~~~~~~~~~~~~~~~~I~D~P~f~~RG~mlD~aR~f~~~ 205 (548)
..|+|+|.+++.+ |+|+|.+.+|+|||++||.||+. .+...+.+.+|. ++|.|+|||.|||+|+|+||||+|+
T Consensus 204 ~~e~y~la~~d~a----i~v~a~~~aG~~y~~~tl~qL~t~a~s~qg~~~~p~--~~I~DaPRf~~rGllvDvaRqf~s~ 277 (732)
T COG3525 204 GEEAYRLAINDKA----IKVTAHDLAGLFYADGTLLQLDTSADSFQGDIRFPA--VTIVDAPRFAWRGLLVDVARQFHST 277 (732)
T ss_pred cchhheeecccce----eEEeeccccchhhhHHHHHhhhccccccCCCeeeee--eecccCcccchhhhhHhhhhhcCCH
Confidence 5899999999998 99999999999999999999988 333345566765 6899999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCC-cCCCC----------------CCCCCCHHHHHHHHHHHHH
Q 008945 206 PIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAYS----------------TSERYTMADAAEIVSYAQK 268 (548)
Q Consensus 206 ~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~-~Ga~~----------------~~~~YT~~di~elv~yA~~ 268 (548)
+.+|++||.|+.+|||+|||||+||||||+||++||+|+ .|+++ .+++||++++++|++||++
T Consensus 278 ~~vk~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~~pe~~ggfytqd~~relv~yAsa 357 (732)
T COG3525 278 DDVKRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGYGPERMGGFYTQDDIRELVAYASA 357 (732)
T ss_pred HHHHHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCcccccCcccccCcccHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998 45532 3589999999999999999
Q ss_pred cCCEEEEccCCCchhhHHHhhCCCCCC-----CC------CCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEecCCCC
Q 008945 269 RGINVLAELDVPGHALSWGKGYPSLWP-----SK------DCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEV 337 (548)
Q Consensus 269 rgI~VIPEID~PGH~~a~~~~~p~l~~-----~~------~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHiGgDEv 337 (548)
|+|+||||||||||+++.+.++|++.. +. ..++.|||+.+-+++|+++|++||.++||+.+|||||||+
T Consensus 358 r~ItviPeiD~PgHa~aav~A~p~~~l~~a~~ds~~sv~~~~n~~ln~tl~~t~~fldkv~dEv~~lfPs~~iHiGgDE~ 437 (732)
T COG3525 358 RQITVIPEIDMPGHARAAVVAYPDLNLGRADPDSYDSVQAYLNPVLNPTLDPTYQFLDKVLDEVADLFPSTTIHIGGDEF 437 (732)
T ss_pred cCceecCCcCCcchhhhhhhhCccccccccCCCcchhhhhcccccccccccHHHHHHHHHHHHHHHhCCcceEEeccchh
Confidence 999999999999999999999996521 11 1234689999999999999999999999999999999999
Q ss_pred CCCCCCC-CHHHHHHHHHCCCChh-hHHHHHHHHHHHHHHHcCCeEEEcccchhccCC---CCCCCeEEEecCCCcHHHH
Q 008945 338 NTSCWTL-TPHVSKWLKEHSMNES-QAYQYFVLQAQKIALLHGYEIVNWEETFNNFGN---KLSPKTVVHNWLGGGVAQR 412 (548)
Q Consensus 338 ~~~~w~~-~p~~~~~~~~~g~~~~-~l~~~f~~~~~~~l~~~g~~~~~W~d~~~~~~~---~l~~~~iv~~W~~~~~~~~ 412 (548)
....|+. +|.|++.|++.|.+.. +++.+|++++.+++.++|++.++|+|.+...+. -+.+++.|++|.+.+..-.
T Consensus 438 ~~~qwk~~sp~~q~l~~~~G~~d~~~lq~~fi~q~~k~l~~~Gr~~igW~e~~~~~~~~~~~~t~~~~vm~W~~~~~ai~ 517 (732)
T COG3525 438 IDGQWKASSPLVQALMEKLGNKDTFELQSYFITQVGKTLASKGRRLIGWDEGAHGGDVNGTALTANVTVMSWYGKDKAIE 517 (732)
T ss_pred ccCeeeccCHHHHHHHHHhccCCcchhhHHHHHHHHHHHHhcCceEEeecchhccCCCccccccCceEEEEEecchhhHH
Confidence 9999999 9999999999998755 899999999999999999999999999864221 1237999999999998899
Q ss_pred HHHhcCcEEEeCCCccccccCC--------cchh------h-hccCCcCCCCC-chhhhccccceeeeeecCCCCCc-ch
Q 008945 413 VVAAGLRCIVSNQDKWYLDHLD--------TTWE------Q-FYMNEPLTNIT-KSEQQKLVIGGEVCMWGETVDAS-DI 475 (548)
Q Consensus 413 ~~~~Gy~vI~s~~~~~Yld~~~--------~~w~------~-~Y~~~p~~~~~-~~~~~~~ilG~~~~lW~E~~~~~-~~ 475 (548)
++++||+||+++...+|+|+.+ ..|. + .|.++|..... +++..++++|.|+|+|+|++... .+
T Consensus 518 ~akqg~dvv~tp~~~~ylD~~q~~~peepg~~~a~t~~l~r~~y~~~~~g~~~~~de~~k~~~G~q~~lWse~~~~~~~f 597 (732)
T COG3525 518 LAKQGYDVVLTPAQFVYLDMLQIAAPEEPGYSWATTTPLERNKYAYDFAGKQPINDELAKRILGVQAALWSEHIQTRGRF 597 (732)
T ss_pred HHhhcccccccchhhhhhhhhcccccccCCCccccccccchhhhhhcccCcccCChHHhhhhhhhHHHHHHHHhhhhhHH
Confidence 9999999999999999999864 2342 2 56666654433 26778999999999999999764 68
Q ss_pred hhhhhhhHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHHcCCCCCCC
Q 008945 476 QQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGIAAAPL 525 (548)
Q Consensus 476 ~~~~~PR~~A~AE~~Ws~~~~~~~~~~~~~~Rl~~~~~~l~~~Gi~~~p~ 525 (548)
++++|||++|+|||+|++..- +||..+..|+..+..+++..++.+.+.
T Consensus 598 ~~~vfprl~a~aEraw~p~a~--~Dw~~~~~r~~~~~~l~~~~~~~~~~~ 645 (732)
T COG3525 598 EYMVFPRLAAAAERAWTPMAF--NDWLYYLDRLSAQLPLLVLISIPYNAW 645 (732)
T ss_pred HHHhcchHHHHHHhhCCchhh--cchhhhhhhcchhcchhhhhccccccc
Confidence 999999999999999998776 499999999999999999988888665
No 8
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=100.00 E-value=6.4e-76 Score=616.50 Aligned_cols=306 Identities=40% Similarity=0.787 Sum_probs=264.8
Q ss_pred CccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCC-cCCCCCCC---CCCHHHHHHHHH
Q 008945 189 FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAYSTSE---RYTMADAAEIVS 264 (548)
Q Consensus 189 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~-~Ga~~~~~---~YT~~di~elv~ 264 (548)
|+|||+|||+||||+|+++||++||.||.+|||+|||||+|+||||+|+++||+|+ .|+++... +||++||++||+
T Consensus 1 f~~RG~~lD~aR~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~ 80 (351)
T PF00728_consen 1 FPWRGLMLDVARHFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVA 80 (351)
T ss_dssp SSEEEEEEETSSS-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHH
T ss_pred CCccceeeccCCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999 78887754 999999999999
Q ss_pred HHHHcCCEEEEccCCCchhhHHHhhCCCCCCC----------CCC----CCCCCCCChHHHHHHHHHHHHHhhhccCcee
Q 008945 265 YAQKRGINVLAELDVPGHALSWGKGYPSLWPS----------KDC----QEPLDVSNEFTFKVIDGILSDFSKVFKYKFV 330 (548)
Q Consensus 265 yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~~----------~~~----~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~i 330 (548)
||++|||+||||||+|||+.+++++||++... ..+ ...|||++|++++|+++|++|++++||+++|
T Consensus 81 yA~~~gI~VIPeid~PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~i 160 (351)
T PF00728_consen 81 YAKERGIEVIPEIDTPGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPSKYI 160 (351)
T ss_dssp HHHHTT-EEEEEEEESSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHcCCceeeeccCchHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCCCeE
Confidence 99999999999999999999999999988542 111 1369999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCHHHHHHHHHCCCCh-hhHHHHHHHHHHHHHHHcCCeEEEcccchhccC--CCCCCCeEEEecCCC
Q 008945 331 HLGGDEVNTSCWTLTPHVSKWLKEHSMNE-SQAYQYFVLQAQKIALLHGYEIVNWEETFNNFG--NKLSPKTVVHNWLGG 407 (548)
Q Consensus 331 HiGgDEv~~~~w~~~p~~~~~~~~~g~~~-~~l~~~f~~~~~~~l~~~g~~~~~W~d~~~~~~--~~l~~~~iv~~W~~~ 407 (548)
||||||++..||.++|.|+++|+++|++. .+++.+|++++.++++++|+++++|+|++...+ ..++++++|+.|.+.
T Consensus 161 HiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~~~~W~D~~~~~~~~~~~~~~~~i~~W~~~ 240 (351)
T PF00728_consen 161 HIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKKPIIWNDMLDDFPDASLLPKDVIIQVWNYD 240 (351)
T ss_dssp EEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSEEEEESTTTTTTCCGHCSCTTEEEEEESST
T ss_pred EeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCcEEEEccccccCCccccccCCceEEEeecc
Confidence 99999999999999999999999999754 499999999999999999999999999998654 358899999999983
Q ss_pred ---cHHHHHHHhcCcEEEeCCCccccccCCc--------------chhhhccCCcCCCCCc-----hhhh-ccccceeee
Q 008945 408 ---GVAQRVVAAGLRCIVSNQDKWYLDHLDT--------------TWEQFYMNEPLTNITK-----SEQQ-KLVIGGEVC 464 (548)
Q Consensus 408 ---~~~~~~~~~Gy~vI~s~~~~~Yld~~~~--------------~w~~~Y~~~p~~~~~~-----~~~~-~~ilG~~~~ 464 (548)
..+..++++||++|+++.+.+|+|+.+. +|..+|.++|...... +.+. ++|+|+++|
T Consensus 241 ~~~~~~~~~~~~g~~vI~s~~~~~Yld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~ 320 (351)
T PF00728_consen 241 WGPASAQEFAKKGYKVINSPSDYLYLDPGQSPWPEEDGNYWAPFNTWSDFYNWDPAYFNTNSTQIDPAQKSERILGGEAA 320 (351)
T ss_dssp THHHHHHHHHHTTHEEEESTHGTGBTTTTSSTTTSSSSBHTTSTHHHHHHHHHHHCHCTTTCSTTTTHHHCCCEEEEEEE
T ss_pred ccchhhhHHHHhcCcEEEcCCCceEEccCcCCCCccCcccccccccccccccccccccccccchhhhhcccCCCceeEEE
Confidence 5678899999999999999999998653 2456677776644332 2333 599999999
Q ss_pred eecCCC-CCcchhhhhhhhHHHHHHHhcCCC
Q 008945 465 MWGETV-DASDIQQTIWPRAAAAAERLWTPY 494 (548)
Q Consensus 465 lW~E~~-~~~~~~~~~~PR~~A~AE~~Ws~~ 494 (548)
+|+|.+ +.+++++++|||++|+||++|++.
T Consensus 321 ~W~E~~~~~~~l~~~~~Pr~~A~AE~~Ws~~ 351 (351)
T PF00728_consen 321 LWSENIRDEEDLDYRLWPRLAALAERLWSPQ 351 (351)
T ss_dssp EETTTTTSHHHHHHHHTTHHHHHHHHHHSS-
T ss_pred eecCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999 556899999999999999999963
No 9
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=6.4e-74 Score=590.41 Aligned_cols=284 Identities=32% Similarity=0.623 Sum_probs=254.8
Q ss_pred cccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCC-cC----CCCCCCCCCHHHHHHHHHH
Q 008945 191 FRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DG----AYSTSERYTMADAAEIVSY 265 (548)
Q Consensus 191 ~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~-~G----a~~~~~~YT~~di~elv~y 265 (548)
|||+|||+||||+|+++||++||.||.+|||+||||||||||||+|+++||+|+ .| +++.+++||++|+++|++|
T Consensus 1 ~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~y 80 (303)
T cd02742 1 IRGIMLDVSRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEY 80 (303)
T ss_pred CcceeeeccccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999998 55 5677899999999999999
Q ss_pred HHHcCCEEEEccCCCchhhHHHhhCCCCCCC-------CCCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEecCCCCC
Q 008945 266 AQKRGINVLAELDVPGHALSWGKGYPSLWPS-------KDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVN 338 (548)
Q Consensus 266 A~~rgI~VIPEID~PGH~~a~~~~~p~l~~~-------~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHiGgDEv~ 338 (548)
|++|||+||||||+|||+.+++++||++... ......|||++|++++|+++|++|++++||+++|||||||+.
T Consensus 81 A~~rgI~viPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHiGgDE~~ 160 (303)
T cd02742 81 AAARGIEVIPEIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHIGGDEAH 160 (303)
T ss_pred HHHcCCEEEEeccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCCeEEecceecC
Confidence 9999999999999999999999999998321 112357999999999999999999999999999999999997
Q ss_pred CCCCCCCHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHcCCeEEEcccchhccCCCCCCCeEEEecCCC-----cHHHHH
Q 008945 339 TSCWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNWLGG-----GVAQRV 413 (548)
Q Consensus 339 ~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~l~~~g~~~~~W~d~~~~~~~~l~~~~iv~~W~~~-----~~~~~~ 413 (548)
.. .+..+++.+|++++.++++++|+++++|+|++... ..++++++|++|.+. ..+.++
T Consensus 161 ~~----------------~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~-~~l~~~~ii~~W~~~~~~~~~~~~~~ 223 (303)
T cd02742 161 FK----------------QDRKHLMSQFIQRVLDIVKKKGKKVIVWQDGFDKK-MKLKEDVIVQYWDYDGDKYNVELPEA 223 (303)
T ss_pred CC----------------CCHHHHHHHHHHHHHHHHHHcCCeEEEecccccCC-CCCCCCeEEEEccCCCCcchHHHHHH
Confidence 64 12358999999999999999999999999998642 368999999999986 578889
Q ss_pred HHhcCcEEEeCCCcccc-ccCCcchhhhccCCcCCCCCchhhhccccceeeeeecCCCCCc-chhhhhhhhHHHHHHHhc
Q 008945 414 VAAGLRCIVSNQDKWYL-DHLDTTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWGETVDAS-DIQQTIWPRAAAAAERLW 491 (548)
Q Consensus 414 ~~~Gy~vI~s~~~~~Yl-d~~~~~w~~~Y~~~p~~~~~~~~~~~~ilG~~~~lW~E~~~~~-~~~~~~~PR~~A~AE~~W 491 (548)
+++||+||+|++.++|+ .....+|+.+|.++|..... ++..++|+|+++|+|+|.++.. ++++++|||++|+||++|
T Consensus 224 ~~~G~~vi~s~~~yly~~~~~~~~~~~~y~~~p~~~~~-~~~~~~vlG~~~~lW~E~~~~~~~~~~~~~pr~~a~AE~~W 302 (303)
T cd02742 224 AAKGFPVILSNGYYLDIFIDGALDARKVYKNDPLAVPT-PQQKDLVLGVIACLWGETVKDTKTLQYRFWPRALAVAERSW 302 (303)
T ss_pred HHCCCCEEEeCCceeeeeCCCCCCHHHHhCCCCCCCCC-cccccceEEEEEeeeccccCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999887777 23446899999999876542 3557799999999999999976 899999999999999999
Q ss_pred C
Q 008945 492 T 492 (548)
Q Consensus 492 s 492 (548)
|
T Consensus 303 s 303 (303)
T cd02742 303 S 303 (303)
T ss_pred C
Confidence 7
No 10
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=2e-70 Score=570.08 Aligned_cols=286 Identities=26% Similarity=0.480 Sum_probs=251.3
Q ss_pred ccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCc-C---------------CCCCCCC
Q 008945 190 SFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-G---------------AYSTSER 253 (548)
Q Consensus 190 ~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~-G---------------a~~~~~~ 253 (548)
++||+|||+||||+|+++||++||.||.+|||+|||||+| +||++++.+|+++. | +.+.+++
T Consensus 1 ~~RG~mLD~aR~~~~~~~ik~~id~ma~~K~N~lhlHltD--~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (326)
T cd06564 1 EVRGFMLDVGRKYYSMDFLKDIIKTMSWYKMNDLQLHLND--NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGY 78 (326)
T ss_pred CcceeEEEccCCCCCHHHHHHHHHHHHHcCCceEEEeecC--CcccccCCCchhhhhhhhhccccccccccCCCCCCCCc
Confidence 4799999999999999999999999999999999999999 89999999999973 2 2356789
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHhhCCCCCCC----CCCCCCCCCCChHHHHHHHHHHHHHhhhcc--C
Q 008945 254 YTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPS----KDCQEPLDVSNEFTFKVIDGILSDFSKVFK--Y 327 (548)
Q Consensus 254 YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~~----~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~--~ 327 (548)
||++|+++||+||++|||+||||||+|||+.+|+++||++... .....+|||++|++++|+++|++|++++|| +
T Consensus 79 YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~ 158 (326)
T cd06564 79 YTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPKS 158 (326)
T ss_pred ccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999998532 234568999999999999999999999999 9
Q ss_pred ceeEecCCCCCCCCCCCCHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHcCCeEEEcccchhccC--CCCCCCeEEEecC
Q 008945 328 KFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNFG--NKLSPKTVVHNWL 405 (548)
Q Consensus 328 ~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~l~~~g~~~~~W~d~~~~~~--~~l~~~~iv~~W~ 405 (548)
+||||||||+... .+..+++.+|++++.++++++||++++|+|++...+ ..++++++|++|.
T Consensus 159 ~~~HiGgDE~~~~----------------~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~~~~~~~~~~l~~~~iv~~W~ 222 (326)
T cd06564 159 DTVHIGADEYAGD----------------AGYAEAFRAYVNDLAKYVKDKGKTPRVWGDGIYYKGDTTVLSKDVIINYWS 222 (326)
T ss_pred CEEEecccccccc----------------CccHHHHHHHHHHHHHHHHHcCCeEEEeCCcccCCCCcccCCCCeEEEeCC
Confidence 9999999999864 123589999999999999999999999999987544 5789999999999
Q ss_pred CC-cHHHHHHHhcCcEEEeCCCccccccCCc------chhhhccCCcCCCC-----CchhhhccccceeeeeecCCCCC-
Q 008945 406 GG-GVAQRVVAAGLRCIVSNQDKWYLDHLDT------TWEQFYMNEPLTNI-----TKSEQQKLVIGGEVCMWGETVDA- 472 (548)
Q Consensus 406 ~~-~~~~~~~~~Gy~vI~s~~~~~Yld~~~~------~w~~~Y~~~p~~~~-----~~~~~~~~ilG~~~~lW~E~~~~- 472 (548)
+. ..+.+++++||+||+|++.++|+|+.+. +|+.+|.+.+.... ..++..++|+|+++|||+|.++.
T Consensus 223 ~~~~~~~~~~~~G~~vI~s~~~~~Y~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ilG~~~~lW~E~~~~~ 302 (326)
T cd06564 223 YGWADPKELLNKGYKIINTNDGYLYIVPGAGYYGDYLNTEDIYNNWTPNKFGGTNATLPEGDPQILGGMFAIWNDDSDAG 302 (326)
T ss_pred CcccCHHHHHHCCCcEEEeCCCcEEEeCCCccCCCccCHHHHHhcCCccccCCCCccCCCCCCCcchhheeeecCCCCcC
Confidence 85 5688999999999999999999997643 36788876543221 12345789999999999999963
Q ss_pred ---cchhhhhhhhHHHHHHHhcCC
Q 008945 473 ---SDIQQTIWPRAAAAAERLWTP 493 (548)
Q Consensus 473 ---~~~~~~~~PR~~A~AE~~Ws~ 493 (548)
.++++++|||++|+||++|++
T Consensus 303 ~t~~~~~~~~~pr~~a~Ae~~W~~ 326 (326)
T cd06564 303 ISEVDIYDRIFPALPAFAEKTWGG 326 (326)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCC
Confidence 478999999999999999985
No 11
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.6e-51 Score=423.17 Aligned_cols=280 Identities=20% Similarity=0.253 Sum_probs=224.4
Q ss_pred cccceecCCC-CCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHc
Q 008945 191 FRGLLIDTSR-HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKR 269 (548)
Q Consensus 191 ~RG~mlD~aR-~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~r 269 (548)
+||+|||+|| +|+++++||++||.||.+|+|+||||++|+ |++ +++|+++. .+++||++|+++|++||++|
T Consensus 1 ~RG~mlD~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~--f~~--~~~p~~~~----~~~~yT~~ei~ei~~yA~~~ 72 (301)
T cd06565 1 FRGVHLDLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDT--FPY--EGEPEVGR----MRGAYTKEEIREIDDYAAEL 72 (301)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecc--eec--CCCccccc----CCCCcCHHHHHHHHHHHHHc
Confidence 5999999999 999999999999999999999999999994 554 57899863 36789999999999999999
Q ss_pred CCEEEEccCCCchhhHHHhh--CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEecCCCCCCCCCCCCHH
Q 008945 270 GINVLAELDVPGHALSWGKG--YPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPH 347 (548)
Q Consensus 270 gI~VIPEID~PGH~~a~~~~--~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHiGgDEv~~~~w~~~p~ 347 (548)
||+||||||+|||++++++. |.+++........|||++|+|++|+++|++|++++||+++|||||||+...+ .++.
T Consensus 73 gI~vIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~g--~~~~ 150 (301)
T cd06565 73 GIEVIPLIQTLGHLEFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYIHIGMDEAYDLG--RGRS 150 (301)
T ss_pred CCEEEecCCCHHHHHHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEECCCcccccC--CCHH
Confidence 99999999999999999873 3334433334578999999999999999999999999999999999998753 3445
Q ss_pred HHHHHHHCCCChhhHHHHHHHHHHHHHHHcCCeEEEcccchhcc---C---CCCCCCeEEEecCCCc-------HHHHHH
Q 008945 348 VSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNF---G---NKLSPKTVVHNWLGGG-------VAQRVV 414 (548)
Q Consensus 348 ~~~~~~~~g~~~~~l~~~f~~~~~~~l~~~g~~~~~W~d~~~~~---~---~~l~~~~iv~~W~~~~-------~~~~~~ 414 (548)
++++ ...+..+++.+|++++.++++++|+++++|+|++... + ..||+++++++|.+.. ....+.
T Consensus 151 ~~~~---~~~~~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~~~~~~~~~~~~~l~~~v~~~~W~y~~~~~~~~~~~~~~~ 227 (301)
T cd06565 151 LRKH---GNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDMLRKLSIEPEALSGLPKLVTPVVWDYYADLDEHDRPIGLWK 227 (301)
T ss_pred HHHh---cCCCHHHHHHHHHHHHHHHHHHcCCEEEEEhHHhcCCCCChHHHhCCCCCeEEEEecCcCCcchhhHhHHHHH
Confidence 5433 3344569999999999999999999999999998752 1 3799999999998753 234455
Q ss_pred HhcCcEEEeCCCccccccCCcchhhhccCC--cCCCCC---chhhhccccceeeeeecCCCCCcchhhhhhhhHHHHHHH
Q 008945 415 AAGLRCIVSNQDKWYLDHLDTTWEQFYMNE--PLTNIT---KSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAER 489 (548)
Q Consensus 415 ~~Gy~vI~s~~~~~Yld~~~~~w~~~Y~~~--p~~~~~---~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~PR~~A~AE~ 489 (548)
+.|.+++++++.. .|+.++... -+.++. .......+.|...+.|++......+ ..++|.+.+.||.
T Consensus 228 ~~~~~~~~~~g~~--------~w~~~~~~~~~~~~n~~~~~~~~~~~~~~G~~~T~W~d~g~~~~~-~~~~p~~~~~~~~ 298 (301)
T cd06565 228 KYGSVFAVAWGAS--------AWKGATPPNDKHLENIKSWLKAAKKNGVQGILLTGWGDYGHEAVL-CELLPGLIPSLAL 298 (301)
T ss_pred HhCCCceEeeeec--------hhccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEecCCCCCcccH-HHHHHHHHHHHHH
Confidence 6677777776543 455544210 011111 1234677999999999999876554 6789999999999
Q ss_pred hcC
Q 008945 490 LWT 492 (548)
Q Consensus 490 ~Ws 492 (548)
.|+
T Consensus 299 ~~~ 301 (301)
T cd06565 299 ALG 301 (301)
T ss_pred hcC
Confidence 985
No 12
>PF14845 Glycohydro_20b2: beta-acetyl hexosaminidase like; PDB: 1O7A_B 2GJX_C 2GK1_D 1NOW_B 1NOU_B 3LMY_B 1NP0_A 3S6T_A 3OZO_A 3NSN_A ....
Probab=99.68 E-value=3.2e-16 Score=141.70 Aligned_cols=119 Identities=35% Similarity=0.580 Sum_probs=80.6
Q ss_pred eecccceEEEcCceEEECC-ceEEEEcCCCCCchhHHHHHHHHHHHHHhhccccccCCCCccc-----ccccccceEEEE
Q 008945 43 IWPMPLSVSHGHKSLYVGK-DFKIMSQGSKYKDASGILKDGFSRFLAVVKGAHVVDGDTSKLD-----QSRVLQGLNVFI 116 (548)
Q Consensus 43 l~P~P~~v~~~~~~~~l~~-~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~v 116 (548)
|||+|++++.|++.+.|++ ++++...+.......++|.++++||.+.++.....+....... ....++.+.|.+
T Consensus 1 lWP~P~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~l~~A~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~I~v 80 (128)
T PF14845_consen 1 LWPKPQSISLGSTVFSLDPSNFKFNFSGSSSNSCSDILQEAIDRYLKLIFKQNPSPCASHSRGSSFKPKSGYLSSLEITV 80 (128)
T ss_dssp -SS--SEEEEECEEEEEECCCEEEEEETTTSTTTHHHHHHHHHHHHHHHHT--TS-TT----S-----BE-ECEEEEEEE
T ss_pred CCCCCcEEEECCceEEEchhhEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccccCCcccccccCCCcceEEEEEE
Confidence 7999999999999999988 7899876543222358999999999999887543332211100 011345678888
Q ss_pred ccCCcc--ccCCCCCCeEEEe-eCCCCCeEEEEEecCchhhHHHHHHHHHH
Q 008945 117 SSTKDE--LQYGIDESYKLLV-PSPDKPTYAHLEAQTVYGALHGLQTLSQL 164 (548)
Q Consensus 117 ~~~~~~--l~~~~~E~Y~L~i-~~~~~~~~i~I~a~~~~G~~~gl~Tl~QL 164 (548)
.+.+.. +.++.||+|+|+| +.++ .|+|+|++.+|++||||||.||
T Consensus 81 ~~~~~~~~l~~~~DESY~L~v~s~~~---~~~I~A~tv~GalrgLETlsQL 128 (128)
T PF14845_consen 81 TSDDEDSELQLGMDESYSLSVPSTNG---QATITANTVWGALRGLETLSQL 128 (128)
T ss_dssp SSSSTTSS--TT----EEEEETSSSE---EEEEEESSHHHHHHHHHHHHHH
T ss_pred EecCCccccCCCCCCCEEEEEecCCc---eEEEEECChhhhhHHHHHHhhC
Confidence 776544 7889999999999 5553 5999999999999999999998
No 13
>PF02838 Glyco_hydro_20b: Glycosyl hydrolase family 20, domain 2; InterPro: IPR015882 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside []. This entry represents the alpha and beta subunit of beta-N-acetylhexosaminidase. It contains a similar fold but lacks the catalytic centre.; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 3SUT_A 3SUS_A 3GH7_A 3SUR_A 3SUW_A 3SUV_A 3SUU_A 3GH5_A 3GH4_A 2J4G_B ....
Probab=99.64 E-value=1.5e-15 Score=136.12 Aligned_cols=123 Identities=20% Similarity=0.210 Sum_probs=76.6
Q ss_pred CceecccceEEEcCceEEECCceEEEEcCCCCCchhHHHHHHHHHHHHHhhccccccCCCCcccccccccceEEEEccCC
Q 008945 41 VRIWPMPLSVSHGHKSLYVGKDFKIMSQGSKYKDASGILKDGFSRFLAVVKGAHVVDGDTSKLDQSRVLQGLNVFISSTK 120 (548)
Q Consensus 41 ~~l~P~P~~v~~~~~~~~l~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~ 120 (548)
+.|||.|++++..+|.|.|+.+++|.++... .. ++.+++.+.+....+....... ......|.+...+
T Consensus 2 ~~iiP~P~~~~~~~g~~~l~~~~~i~~~~~~----~~---~~~~~l~~~l~~~~g~~~~~~~-----~~~~~~i~~~~~~ 69 (124)
T PF02838_consen 2 PSIIPQPQSITLTGGTFTLPQSTKIVVDDPE----LK---AAAERLQDILKRLTGISLSSSG-----SPNKIDIRLLLDD 69 (124)
T ss_dssp ---SS--SEEEEEEEEEEETTTEEEEETTCS----HH---HHHHHHHHHHHHHHTECCCECS-----ETTSEEEEEECTT
T ss_pred CcEEccccEEEECCCEEEECCCcEEEECCcc----cH---HHHHHHHHHHHHHhCCcccccC-----CCCCceEEEeecC
Confidence 6799999999999999999999999987631 11 1122222222212222211000 1123344433222
Q ss_pred ccccCCCCCCeEEEeeCCCCCeEEEEEecCchhhHHHHHHHHHHHhhccCCCeEEeeccceEEecC
Q 008945 121 DELQYGIDESYKLLVPSPDKPTYAHLEAQTVYGALHGLQTLSQLCQFNFSSRVIEILMTPWIINDQ 186 (548)
Q Consensus 121 ~~l~~~~~E~Y~L~i~~~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~ 186 (548)
+ ....+|+|+|+|++++ |+|+|.+..|+|||+|||+||+....+. .+|+ ++|+|+
T Consensus 70 ~--~~~~~E~Y~L~i~~~~----I~I~a~~~~G~~yg~qTL~Qll~~~~~~---~lp~--~~I~D~ 124 (124)
T PF02838_consen 70 D--AGLGEEGYRLSISPKG----ITIEASDPAGLFYGLQTLRQLLRQSGNG---TLPC--VEIEDY 124 (124)
T ss_dssp C--CTSTTT-EEEEEESSE----EEEEESSHHHHHHHHHHHHHHSBTCS-C---EEEE--EEEEE-
T ss_pred C--CCCCCcceEEEEECCE----EEEEEcCchHHHHHHHHHHHHhhccCCC---ccce--EEEEeC
Confidence 1 1236999999999998 9999999999999999999999986422 5675 689996
No 14
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.63 E-value=0.0026 Score=66.33 Aligned_cols=183 Identities=17% Similarity=0.154 Sum_probs=114.6
Q ss_pred cccceecCCC--CCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccc-eecCCCCCCC--cCCCCCCCCCCHHHHHHHHHH
Q 008945 191 FRGLLIDTSR--HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFP-LEIPSYPKLW--DGAYSTSERYTMADAAEIVSY 265 (548)
Q Consensus 191 ~RG~mlD~aR--~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr-le~~~~P~L~--~Ga~~~~~~YT~~di~elv~y 265 (548)
.||+=|++.. .+...+.+.++|+.|...++|++-++..- .|.. +.++-.|... .|. ....-..+=++.+|+.
T Consensus 2 ~RgvWi~~~~~~~~~~~~~~~~~l~~l~~~~~N~V~~qVr~-~gda~Y~S~~~p~s~~~~g~--~~~~pg~DpL~~~I~e 78 (311)
T PF02638_consen 2 FRGVWISTVANIDWPSKEQIDEMLDDLKSAGFNAVFVQVRP-RGDALYPSDIEPWSGYLTGK--QGKDPGFDPLEFMIEE 78 (311)
T ss_pred eEEEEEeecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEe-CcEEEecccccccccccCCC--CCCCCCccHHHHHHHH
Confidence 5888887765 34468999999999999999998888753 2443 3445455322 121 1112235679999999
Q ss_pred HHHcCCEEEEcc--CCCchh-hHHHhhCCCC-C---CCC--------CCCCCCCCCChHHHHHHHHHHHHHhhhccCcee
Q 008945 266 AQKRGINVLAEL--DVPGHA-LSWGKGYPSL-W---PSK--------DCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFV 330 (548)
Q Consensus 266 A~~rgI~VIPEI--D~PGH~-~a~~~~~p~l-~---~~~--------~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~i 330 (548)
|.+|||+|.+=+ -+.++. ..+.+.+|+- . ++. ...--|||++|++.+|+.+++.|+..-.+-.=|
T Consensus 79 aHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGI 158 (311)
T PF02638_consen 79 AHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGI 158 (311)
T ss_pred HHHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeE
Confidence 999999999876 233332 2233445543 1 110 011149999999999999999999998876666
Q ss_pred EecCCCCCC--CCCCC-CHHHHHHHHHCCC---Ch----------hhHHHHHHHHHHHHHHHcC
Q 008945 331 HLGGDEVNT--SCWTL-TPHVSKWLKEHSM---NE----------SQAYQYFVLQAQKIALLHG 378 (548)
Q Consensus 331 HiGgDEv~~--~~w~~-~p~~~~~~~~~g~---~~----------~~l~~~f~~~~~~~l~~~g 378 (548)
|+ |.+.. ..+.. .+..+.|.+..|. +. .+....|++++.+.+++.+
T Consensus 159 hl--Ddy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~k 220 (311)
T PF02638_consen 159 HL--DDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIK 220 (311)
T ss_pred Ee--cccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 74 33322 12222 2344555555441 11 1334577777877777654
No 15
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=97.51 E-value=0.00089 Score=69.35 Aligned_cols=173 Identities=16% Similarity=0.226 Sum_probs=101.6
Q ss_pred ccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCC---HHHHHHHHHHHHH
Q 008945 192 RGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYT---MADAAEIVSYAQK 268 (548)
Q Consensus 192 RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT---~~di~elv~yA~~ 268 (548)
||+.--.-...++.+..+++|+.|+.+|||++-.-..||.=-| .- .++.|+ .+++++|++.|++
T Consensus 1 RGvIEGFYG~PWs~e~R~~l~~f~~~~kmN~YiYAPKdDpyhr-------~~------Wre~Yp~~el~~l~~L~~~a~~ 67 (306)
T PF07555_consen 1 RGVIEGFYGRPWSHEDRLDLIRFLGRYKMNTYIYAPKDDPYHR-------SK------WREPYPEEELAELKELADAAKA 67 (306)
T ss_dssp EEEEE-SSSS---HHHHHHHHHHHHHTT--EEEE--TT-TTTT-------TT------TTS---HHHHHHHHHHHHHHHH
T ss_pred CCceeCcCCCCCCHHHHHHHHHHHHHcCCceEEECCCCChHHH-------hh------hcccCCHHHHHHHHHHHHHHHH
Confidence 7888888899999999999999999999999999998883111 11 123344 4568999999999
Q ss_pred cCCEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEecCCCCCCCCCCCCHHH
Q 008945 269 RGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHV 348 (548)
Q Consensus 269 rgI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHiGgDEv~~~~w~~~p~~ 348 (548)
.||++|--| .||. .++.+.++.++.|..-++++.++ .-+.|-|=.|.+...-|...
T Consensus 68 ~~V~Fv~ai-sPg~-------------------~~~~s~~~d~~~L~~K~~ql~~l-Gvr~FailfDDi~~~~~~~~--- 123 (306)
T PF07555_consen 68 NGVDFVYAI-SPGL-------------------DICYSSEEDFEALKAKFDQLYDL-GVRSFAILFDDIDGDLWHCD--- 123 (306)
T ss_dssp TT-EEEEEE-BGTT-------------------T--TSHHHHHHHHHHHHHHHHCT-T--EEEEE-TS-SSC--TTT---
T ss_pred cCCEEEEEE-Cccc-------------------ccccCcHHHHHHHHHHHHHHHhc-CCCEEEEeecCCCCcccccc---
Confidence 999999888 4443 23455788888888888888776 23556666777765322211
Q ss_pred HHHHHHCC-CChhhHHHHHHHHHHHHHHHcC--CeE------EEcccchh-----ccCCCCCCCeEEEecCCC
Q 008945 349 SKWLKEHS-MNESQAYQYFVLQAQKIALLHG--YEI------VNWEETFN-----NFGNKLSPKTVVHNWLGG 407 (548)
Q Consensus 349 ~~~~~~~g-~~~~~l~~~f~~~~~~~l~~~g--~~~------~~W~d~~~-----~~~~~l~~~~iv~~W~~~ 407 (548)
+.. ....+.+..+++++.+.+.+.. ..+ ..+++... ..+..||+++.|. |+|.
T Consensus 124 -----~~~~~~~~~~q~~l~n~v~~~l~~~~~~~~~l~~cPt~Y~~~~~~~~Yl~~l~~~L~~~i~i~-WTG~ 190 (306)
T PF07555_consen 124 -----KDDFNSLAQAQARLLNRVNKELIKKKGDVKPLIFCPTEYCGDWASPEYLRTLGEQLDPDIQIF-WTGP 190 (306)
T ss_dssp -----TTT-SCHHHHHHHHHHHHHHHTTTCSSSS--EEEE-SS-SCHHHCCHHHHHHHHHS-TTSEEE-E-CS
T ss_pred -----ccccchHHHHHHHHHHHHHHHHhccCCCCCCceEEChhhcCCCCChHHHHHHHhhCCCCCEEE-EcCC
Confidence 011 1234788899999988776543 121 12222221 1234689998887 8875
No 16
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.46 E-value=0.085 Score=54.98 Aligned_cols=161 Identities=17% Similarity=0.192 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEeeCCCccc-eecCCCCCCC-cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCch
Q 008945 205 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFP-LEIPSYPKLW-DGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGH 282 (548)
Q Consensus 205 ~~~lk~~Id~ma~~KlN~lh~HltDdq~fr-le~~~~P~L~-~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH 282 (548)
.+.+.++|+.+...++|.+.+-+.||.|.= +.+ ..|... .|+... + -.|+++|++.++++||.+|--|=++--
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s-~~~~~~~~ga~~~---~-i~D~~~l~~~l~e~gIY~IARIv~FkD 86 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDS-QVPLAREIGAVKP---Y-IKDLKALVKKLKEHGIYPIARIVVFKD 86 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecC-CCchhhhcccccc---c-ccCHHHHHHHHHHCCCEEEEEEEEecC
Confidence 467899999999999999999999998863 222 223322 343211 2 479999999999999999987755542
Q ss_pred hhHHHhhCCCCCC---C------CCCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEecCCCCCCCCCCCCHHHHHHHH
Q 008945 283 ALSWGKGYPSLWP---S------KDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLK 353 (548)
Q Consensus 283 ~~a~~~~~p~l~~---~------~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHiGgDEv~~~~w~~~p~~~~~~~ 353 (548)
... ...+|++.- . .....=+||.++++.+.+-+|-.|.+.+ |-||+... +-..|. ...++
T Consensus 87 ~~l-a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~--------GFdEIqfD-YIRFP~-~~~~~ 155 (316)
T PF13200_consen 87 PVL-AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL--------GFDEIQFD-YIRFPD-EGRLS 155 (316)
T ss_pred hHH-hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc--------CCCEEEee-eeecCC-CCccc
Confidence 221 224677632 1 1112248999999999999999999875 34443221 111111 00000
Q ss_pred -----HCC--CChhhHHHHHHHHHHHHHHHcCCeE
Q 008945 354 -----EHS--MNESQAYQYFVLQAQKIALLHGYEI 381 (548)
Q Consensus 354 -----~~g--~~~~~l~~~f~~~~~~~l~~~g~~~ 381 (548)
... .+..+....|++.+.+.|++.|..+
T Consensus 156 ~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~v 190 (316)
T PF13200_consen 156 GLDYSENDTEESRVDAITDFLAYAREELHPYGVPV 190 (316)
T ss_pred ccccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCE
Confidence 000 1124778899999999999888653
No 17
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.89 E-value=0.39 Score=51.75 Aligned_cols=136 Identities=17% Similarity=0.152 Sum_probs=89.5
Q ss_pred CCccccceec--CCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccc-eecCCCCCCCc--CCCCCCCCCCHHHHHHH
Q 008945 188 RFSFRGLLID--TSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFP-LEIPSYPKLWD--GAYSTSERYTMADAAEI 262 (548)
Q Consensus 188 ~f~~RG~mlD--~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr-le~~~~P~L~~--Ga~~~~~~YT~~di~el 262 (548)
.=+.||+=|| ..+..+.-..+++.+|.+....+|++-.-..-+ |.- +.+...|.-.. |...... -.+=+.++
T Consensus 44 ~~eiRGvWltn~~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~-G~~lypS~~~p~s~~~~~~~~~~~--g~DpLa~~ 120 (418)
T COG1649 44 PQEIRGVWLTNADSRVLFQRQELKDILDDLQKLNFNTVYPQVWND-GDALYPSAVLPWSDGLPGVLGVDP--GYDPLAFV 120 (418)
T ss_pred cccceeEEEecCCCcccccHHHHHHHHHHHHHcCCceeEEEEecC-ccccccccccccccCcCcccCCCC--CCChHHHH
Confidence 3567999998 557788899999999999999999998877543 222 22233332210 1100011 23568999
Q ss_pred HHHHHHcCCEEEEccCCCchhh---HHHhhCCCCC----CC-------CC-CCCCCCCCChHHHHHHHHHHHHHhhhcc
Q 008945 263 VSYAQKRGINVLAELDVPGHAL---SWGKGYPSLW----PS-------KD-CQEPLDVSNEFTFKVIDGILSDFSKVFK 326 (548)
Q Consensus 263 v~yA~~rgI~VIPEID~PGH~~---a~~~~~p~l~----~~-------~~-~~~~ld~~~~~t~~~l~~v~~E~~~lF~ 326 (548)
|+-|++|||+|+|=++.-.-+- ..-+.+|+-- +. +. ..--|||..|++.+|+.+++-|+..-++
T Consensus 121 I~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Yd 199 (418)
T COG1649 121 IAEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYD 199 (418)
T ss_pred HHHHHhcCCeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCC
Confidence 9999999999999765332221 1122344321 10 00 1235999999999999999999987665
No 18
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.30 E-value=0.19 Score=45.85 Aligned_cols=109 Identities=14% Similarity=0.160 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHh
Q 008945 209 KNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGK 288 (548)
Q Consensus 209 k~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~ 288 (548)
+++++.|...+.|.+.+...+..||-+ ||.=. |. ....++++=++|+|+-|+++||+|+--+|.--+... .+
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ay----YPt~~-~~--~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~-~~ 74 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAY----YPTKV-GP--RHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDEDA-AE 74 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEE----ccCCC-Cc--CCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChHH-HH
Confidence 678999999999999998887777765 55322 21 234456677899999999999999999988755444 35
Q ss_pred hCCCCC---CCCC------C----CCCCCCCChHHHHHHHHHHHHHhhhcc
Q 008945 289 GYPSLW---PSKD------C----QEPLDVSNEFTFKVIDGILSDFSKVFK 326 (548)
Q Consensus 289 ~~p~l~---~~~~------~----~~~ld~~~~~t~~~l~~v~~E~~~lF~ 326 (548)
.|||-+ +++. . -..+|+..+ -.+++...++|+.+.++
T Consensus 75 ~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~-Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 75 RHPEWFVRDADGRPMRGERFGYPGWYTCCLNSP-YREFLLEQIREILDRYD 124 (132)
T ss_pred hCCceeeECCCCCCcCCCCcCCCCceecCCCcc-HHHHHHHHHHHHHHcCC
Confidence 788863 1211 0 113566554 55899999999998776
No 19
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=95.01 E-value=0.17 Score=53.98 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=81.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEeeCCCccc-eecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCc
Q 008945 203 QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFP-LEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPG 281 (548)
Q Consensus 203 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr-le~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PG 281 (548)
+|.+.+++-|+.|...++|++.++.. +|. +| | ..+.|.-+.+..+++.|+++||.||--+-+..
T Consensus 7 ~~~e~~~~d~~~m~~~G~n~vri~~~---~W~~lE----P--------~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~ 71 (374)
T PF02449_consen 7 WPEEEWEEDLRLMKEAGFNTVRIGEF---SWSWLE----P--------EEGQYDFSWLDRVLDLAAKHGIKVILGTPTAA 71 (374)
T ss_dssp S-CCHHHHHHHHHHHHT-SEEEE-CC---EHHHH-----S--------BTTB---HHHHHHHHHHHCTT-EEEEEECTTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEe---chhhcc----C--------CCCeeecHHHHHHHHHHHhccCeEEEEecccc
Confidence 46789999999999999999998632 342 33 2 24667888999999999999999997654333
Q ss_pred hhhHHHhhCCCCCCC---C-----CCCCCCCCCChHHHHHHHHHHHHHhhhccC-c---eeEecCCCCCC-CCCCCCHHH
Q 008945 282 HALSWGKGYPSLWPS---K-----DCQEPLDVSNEFTFKVIDGILSDFSKVFKY-K---FVHLGGDEVNT-SCWTLTPHV 348 (548)
Q Consensus 282 H~~a~~~~~p~l~~~---~-----~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~-~---~iHiGgDEv~~-~~w~~~p~~ 348 (548)
.=..+.+.||+.... + ......|+.+|...+.+..+++++.+-+.+ + -+||+ -|... .| -||.|
T Consensus 72 ~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~-NE~~~~~~--~~~~~ 148 (374)
T PF02449_consen 72 PPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQID-NEPGYHRC--YSPAC 148 (374)
T ss_dssp S-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEC-CSTTCTS----SHHH
T ss_pred cccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEec-cccCcCcC--CChHH
Confidence 323445678987431 1 122357899999999999999999887753 2 45653 34433 33 24554
Q ss_pred H
Q 008945 349 S 349 (548)
Q Consensus 349 ~ 349 (548)
+
T Consensus 149 ~ 149 (374)
T PF02449_consen 149 Q 149 (374)
T ss_dssp H
T ss_pred H
Confidence 4
No 20
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=94.80 E-value=0.068 Score=54.57 Aligned_cols=113 Identities=15% Similarity=0.070 Sum_probs=64.3
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 008945 201 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVP 280 (548)
Q Consensus 201 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~P 280 (548)
+-...+..|++||..|.+++-.+.+ |.||.-. ... ..+.....+...+|+|||+||+++||.|+-=...-
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~--~~~----~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~ 96 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLV----DAGWYGW--EKD----DDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSE 96 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEE----BTTCCGS----T----TT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEe----ccccccc--ccc----ccccccccCCccCHHHHHHHHHHcCCCEEEEEeCC
Confidence 4567999999999999999998888 7899630 000 01112234667899999999999998887543222
Q ss_pred c---------hhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 008945 281 G---------HALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSK 323 (548)
Q Consensus 281 G---------H~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~ 323 (548)
+ ++..+++.|-++.-.+..-.=++-.+.++.++.++|+++.++
T Consensus 97 ~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~ 148 (273)
T PF10566_consen 97 TGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAE 148 (273)
T ss_dssp HTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHH
T ss_pred cchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHH
Confidence 2 112222222222110000012344677788888888877766
No 21
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=92.94 E-value=2.9 Score=44.99 Aligned_cols=168 Identities=20% Similarity=0.141 Sum_probs=109.5
Q ss_pred cCCCCCCeEEEeeCCCCCeEEEEEecCchhhHHHHHHHHHHHhhccCCCeEEeeccceEEecCCCCccccce----ecC-
Q 008945 124 QYGIDESYKLLVPSPDKPTYAHLEAQTVYGALHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRGLL----IDT- 198 (548)
Q Consensus 124 ~~~~~E~Y~L~i~~~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~~RG~m----lD~- 198 (548)
.+ .+|||.|..-.-+..-...|.|++..|++||+=-|+.||+.... +-. +.|...|+-..|-+. ||-
T Consensus 90 ~L-gEEGy~irt~~~~g~~~lvi~g~t~~gvlYG~F~ll~liq~g~~-----v~k--l~iv~~Pk~klRMlNhWDNlDg~ 161 (684)
T COG3661 90 KL-GEEGYLIRTVTVGGKATLVIAGNTDIGVLYGVFRLLSLIQTGQS-----VDK--LDIVSVPKVKLRMLNHWDNLDGH 161 (684)
T ss_pred cc-cCcceEEEEEEeCCeEEEEEEeccceeEEeeHHHHHHHHHhccc-----hhh--cchhcCcHHHHhhhhhhhccccc
Confidence 44 48999886544433345789999999999999999999986531 211 346666666666441 121
Q ss_pred -CCCC------------C-ChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCC---HHHHHH
Q 008945 199 -SRHY------------Q-PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYT---MADAAE 261 (548)
Q Consensus 199 -aR~f------------~-~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT---~~di~e 261 (548)
-|.| . -...+|..-+.+|..++|-..+.-.. .++-. ..-.| -.+++.
T Consensus 162 iERGYaG~SIFf~~n~~~~n~qR~kDYAR~laSiGINg~v~NNVN-------vk~~e---------~~lit~~fl~k~ak 225 (684)
T COG3661 162 IERGYAGQSIFFWWNLPGHNDQRMKDYARALASIGINGTVLNNVN-------VKKAE---------SYLITAPFLAKAAK 225 (684)
T ss_pred eecccCCCceeeeccccccchHHHHHHHHHHhhcCcceEEecccc-------cchhh---------hheechHhHHHHHH
Confidence 1211 1 13668899999999999988774221 11000 00012 245666
Q ss_pred HHHHHHHcCCEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhccC
Q 008945 262 IVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKY 327 (548)
Q Consensus 262 lv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~ 327 (548)
|...-+.+||.|.-.|+.-.-+. |. ...+-||.++++..+-++-.+|+-+..|+
T Consensus 226 lAdiFR~YGIK~yLsinfaSP~~--------lG----gL~TADPLDe~VrawWkeka~~IY~yIPD 279 (684)
T COG3661 226 LADIFRPYGIKVYLSINFASPME--------LG----GLKTADPLDEAVRAWWKEKADEIYKYIPD 279 (684)
T ss_pred HHHHhhhccceEEEEeccCCccc--------cC----CcCcCCcccHHHHHHHHHHHHHHHHhccc
Confidence 66777899999999886543322 21 12356889999999999999999888775
No 22
>smart00642 Aamy Alpha-amylase domain.
Probab=92.23 E-value=0.57 Score=44.28 Aligned_cols=76 Identities=22% Similarity=0.252 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEeeCC------CccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEc
Q 008945 203 QPLPIIKNVIDSMAYAKLNVLHWHIVDT------QSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAE 276 (548)
Q Consensus 203 ~~~~~lk~~Id~ma~~KlN~lh~HltDd------q~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPE 276 (548)
=....|.+-++.++..++|.+++-.--. ..+.+....|-.+. ..+=|.+|++++|+-|+++||+||-.
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~------~~~Gt~~d~~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQID------PRFGTMEDFKELVDAAHARGIKVILD 89 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCC------cccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3467788888999999999999854210 11122222221111 11127899999999999999999999
Q ss_pred cCCCchhhH
Q 008945 277 LDVPGHALS 285 (548)
Q Consensus 277 ID~PGH~~a 285 (548)
+ +|.|+..
T Consensus 90 ~-V~NH~~~ 97 (166)
T smart00642 90 V-VINHTSD 97 (166)
T ss_pred E-CCCCCCC
Confidence 9 8888775
No 23
>PRK12313 glycogen branching enzyme; Provisional
Probab=91.88 E-value=1.8 Score=49.60 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=73.6
Q ss_pred CCChHHH-HHHHHHHHHcCCcEEEEEeeC----CCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEc
Q 008945 202 YQPLPII-KNVIDSMAYAKLNVLHWHIVD----TQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAE 276 (548)
Q Consensus 202 f~~~~~l-k~~Id~ma~~KlN~lh~HltD----dq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPE 276 (548)
+-+...| .++||.+..+++|.+++=..= +.+|.+....|=.+ ...+=|.+|+|+||+.|.++||.||-.
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i------~~~~Gt~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAP------TSRYGTPEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcC------CCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4454554 466799999999999985421 11333332222111 112227999999999999999999999
Q ss_pred cCCCchhhHH---HhhC---CCCC-CC---C----CCCCCCCCCChHHHHHHHHHHHHHhhhc
Q 008945 277 LDVPGHALSW---GKGY---PSLW-PS---K----DCQEPLDVSNEFTFKVIDGILSDFSKVF 325 (548)
Q Consensus 277 ID~PGH~~a~---~~~~---p~l~-~~---~----~~~~~ld~~~~~t~~~l~~v~~E~~~lF 325 (548)
+ +|.|+..- +..+ +... .. . .....+|..+|++.+++.+++.-..+-|
T Consensus 240 ~-V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~ 301 (633)
T PRK12313 240 W-VPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEY 301 (633)
T ss_pred E-CCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHh
Confidence 8 78998631 1000 0000 00 0 0112578899999999999888777653
No 24
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=91.78 E-value=1.4 Score=49.52 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEeeCC----CccceecCCCCCCCcCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEccCC
Q 008945 205 LPIIKNVIDSMAYAKLNVLHWHIVDT----QSFPLEIPSYPKLWDGAYSTSERY-TMADAAEIVSYAQKRGINVLAELDV 279 (548)
Q Consensus 205 ~~~lk~~Id~ma~~KlN~lh~HltDd----q~frle~~~~P~L~~Ga~~~~~~Y-T~~di~elv~yA~~rgI~VIPEID~ 279 (548)
..-|.+-||.++.+++|.+++-..-+ .+|.+....| +.....| |.+|+|+||+-|.++||+||-.+ +
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~-------~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~-V 181 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLP-------YAPHNAYGGPDDLKALVDAAHGLGLGVILDV-V 181 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCc-------cccccccCCHHHHHHHHHHHHHCCCEEEEEE-c
Confidence 45566778999999999999965311 2233322111 1112222 78999999999999999999998 7
Q ss_pred CchhhHHHhhCCCCCC------CCCCCCCCCCCCh---HHHHHHHHHHHHHhhh
Q 008945 280 PGHALSWGKGYPSLWP------SKDCQEPLDVSNE---FTFKVIDGILSDFSKV 324 (548)
Q Consensus 280 PGH~~a~~~~~p~l~~------~~~~~~~ld~~~~---~t~~~l~~v~~E~~~l 324 (548)
+.|+..-....+.+.+ ...+...+|..++ ++.+++.+.+.-..+-
T Consensus 182 ~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e 235 (542)
T TIGR02402 182 YNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLRE 235 (542)
T ss_pred cCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 8897632111111111 1123345777777 7777777766655543
No 25
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=90.76 E-value=1.8 Score=49.53 Aligned_cols=110 Identities=17% Similarity=0.225 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCCcEEEEEee-CC---CccceecCCCCCCCcCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEccCCCch
Q 008945 208 IKNVIDSMAYAKLNVLHWHIV-DT---QSFPLEIPSYPKLWDGAYSTSERY-TMADAAEIVSYAQKRGINVLAELDVPGH 282 (548)
Q Consensus 208 lk~~Id~ma~~KlN~lh~Hlt-Dd---q~frle~~~~P~L~~Ga~~~~~~Y-T~~di~elv~yA~~rgI~VIPEID~PGH 282 (548)
+.++||.+..+++|.+++=.. +. .+|.+....| |.....| |.+|+|+||+-|.++||.||-.+ ++.|
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y-------~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~-V~NH 230 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGY-------YAPTSRFGTPDDFMYFVDACHQAGIGVILDW-VPGH 230 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC-------cccccccCCHHHHHHHHHHHHHCCCEEEEEe-cccC
Confidence 345579999999999998331 11 1243332222 1222222 78999999999999999999998 7899
Q ss_pred hhHH---HhhC---CCCC---CC-C----CCCCCCCCCChHHHHHHHHHHHHHhhhc
Q 008945 283 ALSW---GKGY---PSLW---PS-K----DCQEPLDVSNEFTFKVIDGILSDFSKVF 325 (548)
Q Consensus 283 ~~a~---~~~~---p~l~---~~-~----~~~~~ld~~~~~t~~~l~~v~~E~~~lF 325 (548)
+..- +..+ |... +. . .....+|..+|++.+++.++++-..+-|
T Consensus 231 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey 287 (613)
T TIGR01515 231 FPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFY 287 (613)
T ss_pred cCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHh
Confidence 8631 1111 1110 00 0 0112478899999999999988887654
No 26
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=90.69 E-value=1.4 Score=50.05 Aligned_cols=122 Identities=15% Similarity=0.228 Sum_probs=78.5
Q ss_pred ceecCCCC--CCC-hHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCC------cCCCCCCCCC-CHHHHHHHH
Q 008945 194 LLIDTSRH--YQP-LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW------DGAYSTSERY-TMADAAEIV 263 (548)
Q Consensus 194 ~mlD~aR~--f~~-~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~------~Ga~~~~~~Y-T~~di~elv 263 (548)
+|+-+-+. +.+ .+...++|+.++..++|.+.+= .+..||--. .|-|.+...| |.+|+|.+|
T Consensus 150 lHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELM---------Pv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fV 220 (628)
T COG0296 150 LHVGSFTPDRFLGYFELAIELLPYLKELGITHIELM---------PVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALV 220 (628)
T ss_pred EEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEc---------ccccCCCCCCCCCCcceeccccccCCCHHHHHHHH
Confidence 45555544 344 5667899999999999998883 334455321 2334454455 899999999
Q ss_pred HHHHHcCCEEEEccCCCchhhHHH---hhCC-CCC-----CCC-----CCCCCCCCCChHHHHHHHHHHHHHhhhc
Q 008945 264 SYAQKRGINVLAELDVPGHALSWG---KGYP-SLW-----PSK-----DCQEPLDVSNEFTFKVIDGILSDFSKVF 325 (548)
Q Consensus 264 ~yA~~rgI~VIPEID~PGH~~a~~---~~~p-~l~-----~~~-----~~~~~ld~~~~~t~~~l~~v~~E~~~lF 325 (548)
+.|.++||.||-.. +|||...-. ..+- ... +.. -.....|...+++..|+-+-..--.+-|
T Consensus 221 D~aH~~GIgViLD~-V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~y 295 (628)
T COG0296 221 DAAHQAGIGVILDW-VPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEY 295 (628)
T ss_pred HHHHHcCCEEEEEe-cCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999998 999987521 1111 110 000 0112345568999998876555555443
No 27
>PRK12568 glycogen branching enzyme; Provisional
Probab=90.02 E-value=2.4 Score=49.10 Aligned_cols=116 Identities=13% Similarity=0.174 Sum_probs=74.3
Q ss_pred CCChHHH-HHHHHHHHHcCCcEEEEEeeCC----CccceecCCCCCCCcCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEE
Q 008945 202 YQPLPII-KNVIDSMAYAKLNVLHWHIVDT----QSFPLEIPSYPKLWDGAYSTSER-YTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 202 f~~~~~l-k~~Id~ma~~KlN~lh~HltDd----q~frle~~~~P~L~~Ga~~~~~~-YT~~di~elv~yA~~rgI~VIP 275 (548)
+.+...+ .++|+.+..+++|.+++-..-. .+|.+... |-|..... =|.+|+|++|+.|.++||.||-
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~-------~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIl 337 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPL-------GLYAPTARHGSPDGFAQFVDACHRAGIGVIL 337 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCC-------cCCccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 4454444 4568999999999999864311 12333221 22222222 2799999999999999999999
Q ss_pred ccCCCchhhHHHh---hCC--CCC--CCCC-------CCCCCCCCChHHHHHHHHHHHHHhhhc
Q 008945 276 ELDVPGHALSWGK---GYP--SLW--PSKD-------CQEPLDVSNEFTFKVIDGILSDFSKVF 325 (548)
Q Consensus 276 EID~PGH~~a~~~---~~p--~l~--~~~~-------~~~~ld~~~~~t~~~l~~v~~E~~~lF 325 (548)
++ +|+|+..-.. .+. .+. ++.. ....+|..+|++.+|+-+.+.-..+-|
T Consensus 338 D~-V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~ey 400 (730)
T PRK12568 338 DW-VSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHY 400 (730)
T ss_pred Ee-ccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHh
Confidence 99 7999874211 111 010 0000 011468999999999998887777654
No 28
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=89.95 E-value=1.3 Score=44.37 Aligned_cols=157 Identities=16% Similarity=0.149 Sum_probs=88.6
Q ss_pred ccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHc
Q 008945 190 SFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKR 269 (548)
Q Consensus 190 ~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~r 269 (548)
.+||+-.. +..-....+.++.|+..++|.+-+++. |..-.+.-|... + ..-..+.++++|+.|+++
T Consensus 9 ~~~G~n~~----w~~~~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~~---~---~~~~~~~ld~~v~~a~~~ 74 (281)
T PF00150_consen 9 NWRGFNTH----WYNPSITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGYN---Y---DETYLARLDRIVDAAQAY 74 (281)
T ss_dssp EEEEEEET----TSGGGSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTTS---B---THHHHHHHHHHHHHHHHT
T ss_pred Eeeeeecc----cCCCCCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCcc---c---cHHHHHHHHHHHHHHHhC
Confidence 45777654 433338899999999999999999885 311111111110 0 001357899999999999
Q ss_pred CCEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEecCCCCCCCCCCCCHHHH
Q 008945 270 GINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVS 349 (548)
Q Consensus 270 gI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHiGgDEv~~~~w~~~p~~~ 349 (548)
||.||..+-.. |..+. ........+...+.+.++++.++.-|...--++|=|=.+.......+ .
T Consensus 75 gi~vild~h~~----------~~w~~----~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~--~ 138 (281)
T PF00150_consen 75 GIYVILDLHNA----------PGWAN----GGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDD--A 138 (281)
T ss_dssp T-EEEEEEEES----------TTCSS----STSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTST--T
T ss_pred CCeEEEEeccC----------ccccc----cccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCc--c
Confidence 99999866222 22111 11223345556677888888888877332224443212211110000 0
Q ss_pred HHHHHCCCChhhHHHHHHHHHHHHHHHcCCe
Q 008945 350 KWLKEHSMNESQAYQYFVLQAQKIALLHGYE 380 (548)
Q Consensus 350 ~~~~~~g~~~~~l~~~f~~~~~~~l~~~g~~ 380 (548)
.+ +....+.+..|.+++.+.+++.+..
T Consensus 139 ~w----~~~~~~~~~~~~~~~~~~Ir~~~~~ 165 (281)
T PF00150_consen 139 NW----NAQNPADWQDWYQRAIDAIRAADPN 165 (281)
T ss_dssp TT----SHHHTHHHHHHHHHHHHHHHHTTSS
T ss_pred cc----ccccchhhhhHHHHHHHHHHhcCCc
Confidence 00 0002366778899999999988764
No 29
>PRK05402 glycogen branching enzyme; Provisional
Probab=89.89 E-value=2.7 Score=49.02 Aligned_cols=117 Identities=13% Similarity=0.041 Sum_probs=73.7
Q ss_pred CCChHHHH-HHHHHHHHcCCcEEEEEeeC----CCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEc
Q 008945 202 YQPLPIIK-NVIDSMAYAKLNVLHWHIVD----TQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAE 276 (548)
Q Consensus 202 f~~~~~lk-~~Id~ma~~KlN~lh~HltD----dq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPE 276 (548)
+-+...|. ++||.+..+++|.+++=..- +.+|.+....|=.+ ...+=|.+|+|+||+-|.++||+||-.
T Consensus 261 ~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai------~~~~Gt~~dfk~lV~~~H~~Gi~VilD 334 (726)
T PRK05402 261 FLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAP------TSRFGTPDDFRYFVDACHQAGIGVILD 334 (726)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCc------CcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 44555554 55799999999999985431 12343333222111 122338999999999999999999999
Q ss_pred cCCCchhhHH---HhhCC---CCC-CC---C----CCCCCCCCCChHHHHHHHHHHHHHhhhc
Q 008945 277 LDVPGHALSW---GKGYP---SLW-PS---K----DCQEPLDVSNEFTFKVIDGILSDFSKVF 325 (548)
Q Consensus 277 ID~PGH~~a~---~~~~p---~l~-~~---~----~~~~~ld~~~~~t~~~l~~v~~E~~~lF 325 (548)
+ +|.|+..- +..+. .+. +. + .....+|..+|++.+++.+.+.-.++-|
T Consensus 335 ~-V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~ 396 (726)
T PRK05402 335 W-VPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEF 396 (726)
T ss_pred E-CCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHh
Confidence 8 78998531 11110 000 00 0 0111468899999999998888777643
No 30
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=89.86 E-value=8.9 Score=44.74 Aligned_cols=168 Identities=17% Similarity=0.177 Sum_probs=97.4
Q ss_pred CCChHH-HHHHHHHHHHcCCcEEEEEeeCC----CccceecCCCCCCCcCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEE
Q 008945 202 YQPLPI-IKNVIDSMAYAKLNVLHWHIVDT----QSFPLEIPSYPKLWDGAYSTSERY-TMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 202 f~~~~~-lk~~Id~ma~~KlN~lh~HltDd----q~frle~~~~P~L~~Ga~~~~~~Y-T~~di~elv~yA~~rgI~VIP 275 (548)
+-+... ..+.|+.+..+++|.+++-..-+ .+|-+....| +.....| |.+|+|+||+-|.++||.||-
T Consensus 246 ~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~-------fa~~~~~Gtp~dlk~LVd~aH~~GI~Vil 318 (758)
T PLN02447 246 VNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNF-------FAVSSRSGTPEDLKYLIDKAHSLGLRVLM 318 (758)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccC-------cccccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 344444 46789999999999999854311 2333332222 1222223 789999999999999999999
Q ss_pred ccCCCchhhHHH----hhC----CCCCC---CC----CCCCCCCCCChHHHHHHHHHHHHHhhhcc-----------Cce
Q 008945 276 ELDVPGHALSWG----KGY----PSLWP---SK----DCQEPLDVSNEFTFKVIDGILSDFSKVFK-----------YKF 329 (548)
Q Consensus 276 EID~PGH~~a~~----~~~----p~l~~---~~----~~~~~ld~~~~~t~~~l~~v~~E~~~lF~-----------~~~ 329 (548)
.+ ++.|+..-. ..+ +.... .+ .....+|..++++.+||.+.++-..+-|. .-|
T Consensus 319 Dv-V~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY 397 (758)
T PLN02447 319 DV-VHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLY 397 (758)
T ss_pred Ee-ccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhc
Confidence 98 899986311 111 11100 00 01124788999999999998887776431 134
Q ss_pred eEecCCCCCCCCCCCCHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHcCCeEEEccc
Q 008945 330 VHLGGDEVNTSCWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEE 386 (548)
Q Consensus 330 iHiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~l~~~g~~~~~W~d 386 (548)
.|-|-..-+...+.+ .-|.....--..|+..+.+.+++.....+.=.|
T Consensus 398 ~~hg~~~~f~~~~~~---------~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAE 445 (758)
T PLN02447 398 HHHGLQMAFTGNYNE---------YFGMATDVDAVVYLMLANDLLHGLYPEAVTIAE 445 (758)
T ss_pred cccCcccccccCccc---------ccCCccChHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 555543322111211 011111111235788888888876655544444
No 31
>PRK14706 glycogen branching enzyme; Provisional
Probab=89.85 E-value=7.6 Score=44.63 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=73.5
Q ss_pred CCChHH-HHHHHHHHHHcCCcEEEEEeeCC----CccceecCCCCCCCcCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEE
Q 008945 202 YQPLPI-IKNVIDSMAYAKLNVLHWHIVDT----QSFPLEIPSYPKLWDGAYSTSERY-TMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 202 f~~~~~-lk~~Id~ma~~KlN~lh~HltDd----q~frle~~~~P~L~~Ga~~~~~~Y-T~~di~elv~yA~~rgI~VIP 275 (548)
|.+... +.++|+.+...++|.+++=..-. .+|.+.... -|.....| |.+|+|.+|+-|.++||.||.
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~-------~~~~~~~~g~~~~~~~lv~~~H~~gi~Vil 235 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTG-------YYAPTSRLGTPEDFKYLVNHLHGLGIGVIL 235 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCccc-------ccccccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 556333 45667899999999988853311 123222211 12333334 799999999999999999999
Q ss_pred ccCCCchhhHH---HhhC---CCC--C-CC-C----CCCCCCCCCChHHHHHHHHHHHHHhhhc
Q 008945 276 ELDVPGHALSW---GKGY---PSL--W-PS-K----DCQEPLDVSNEFTFKVIDGILSDFSKVF 325 (548)
Q Consensus 276 EID~PGH~~a~---~~~~---p~l--~-~~-~----~~~~~ld~~~~~t~~~l~~v~~E~~~lF 325 (548)
++ ++.|+..- +..+ |.. . +. + .....+|..++++.+|+.+.+.-..+-|
T Consensus 236 D~-v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~ 298 (639)
T PRK14706 236 DW-VPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDF 298 (639)
T ss_pred Ee-cccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHh
Confidence 98 88997531 1111 111 0 00 0 0112478899999999999887776544
No 32
>PRK14705 glycogen branching enzyme; Provisional
Probab=88.35 E-value=3.3 Score=50.67 Aligned_cols=110 Identities=18% Similarity=0.296 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcCCcEEEEEeeC----CCccceecCCCCCCCcCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEccCCCch
Q 008945 208 IKNVIDSMAYAKLNVLHWHIVD----TQSFPLEIPSYPKLWDGAYSTSERY-TMADAAEIVSYAQKRGINVLAELDVPGH 282 (548)
Q Consensus 208 lk~~Id~ma~~KlN~lh~HltD----dq~frle~~~~P~L~~Ga~~~~~~Y-T~~di~elv~yA~~rgI~VIPEID~PGH 282 (548)
..++||.+..+++|.+++-..- +.+|-+....| |.....| |.+|+|++|+.|.++||.||-.+ +|+|
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y-------~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~-V~nH 839 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSY-------FAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW-VPAH 839 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCcccc-------CCcCcccCCHHHHHHHHHHHHHCCCEEEEEe-cccc
Confidence 4567899999999999985431 12343333222 2222222 89999999999999999999988 8999
Q ss_pred hhH--H-HhhC---CCCC-CC------CC-CCCCCCCCChHHHHHHHHHHHHHhhhc
Q 008945 283 ALS--W-GKGY---PSLW-PS------KD-CQEPLDVSNEFTFKVIDGILSDFSKVF 325 (548)
Q Consensus 283 ~~a--~-~~~~---p~l~-~~------~~-~~~~ld~~~~~t~~~l~~v~~E~~~lF 325 (548)
+.. + +..+ +-+. .+ .. ....+|..++++.+|+.+...-..+-|
T Consensus 840 ~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~ey 896 (1224)
T PRK14705 840 FPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEF 896 (1224)
T ss_pred CCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHh
Confidence 842 1 1111 1110 00 00 112478999999999998887777654
No 33
>PLN02960 alpha-amylase
Probab=88.33 E-value=3.5 Score=48.51 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=75.0
Q ss_pred CCChHHHH-HHHHHHHHcCCcEEEEEee----CCCccceecCCCCCCCcCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEE
Q 008945 202 YQPLPIIK-NVIDSMAYAKLNVLHWHIV----DTQSFPLEIPSYPKLWDGAYSTSERY-TMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 202 f~~~~~lk-~~Id~ma~~KlN~lh~Hlt----Ddq~frle~~~~P~L~~Ga~~~~~~Y-T~~di~elv~yA~~rgI~VIP 275 (548)
+-+...+. +.|+.+..+++|.+++-.. +..+|.+....| |.....| |.+|+++||+.|.++||.||-
T Consensus 412 ~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~y-------fa~~~~yGtp~dfk~LVd~aH~~GI~VIL 484 (897)
T PLN02960 412 ISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNF-------FAVSSRFGTPDDFKRLVDEAHGLGLLVFL 484 (897)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC-------CCcccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 44555554 7799999999999999644 222343322221 2222222 789999999999999999999
Q ss_pred ccCCCchhhHH----Hh---hCCCCC-C---CC----CCCCCCCCCChHHHHHHHHHHHHHhhhc
Q 008945 276 ELDVPGHALSW----GK---GYPSLW-P---SK----DCQEPLDVSNEFTFKVIDGILSDFSKVF 325 (548)
Q Consensus 276 EID~PGH~~a~----~~---~~p~l~-~---~~----~~~~~ld~~~~~t~~~l~~v~~E~~~lF 325 (548)
.+ +|.|+..- +. +.+.+. . .+ .....+|..++++.+|+-+.+.-..+-|
T Consensus 485 Dv-V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Ey 548 (897)
T PLN02960 485 DI-VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEY 548 (897)
T ss_pred Ee-cccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 98 88998631 11 111110 0 00 0112478999999999998877776543
No 34
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=88.31 E-value=0.49 Score=47.79 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEee---CCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCc
Q 008945 205 LPIIKNVIDSMAYAKLNVLHWHIV---DTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPG 281 (548)
Q Consensus 205 ~~~lk~~Id~ma~~KlN~lh~Hlt---Ddq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PG 281 (548)
..-|.+-||.++.+++|.+++-.. ....|.+....|=.+ ...+=|.+|+++||+-|.++||+||-.+ ++.
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~v------d~~~Gt~~d~~~Lv~~~h~~gi~VilD~-V~N 75 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAV------DPRFGTMEDFKELVDAAHKRGIKVILDV-VPN 75 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEE------STTTBHHHHHHHHHHHHHHTTCEEEEEE-ETS
T ss_pred HHHHHHhhHHHHHcCCCceecccccccccccccccceeeecc------ccccchhhhhhhhhhccccccceEEEee-ecc
Confidence 345777899999999999998421 101112111111000 0111179999999999999999999988 777
Q ss_pred hhhH
Q 008945 282 HALS 285 (548)
Q Consensus 282 H~~a 285 (548)
|+..
T Consensus 76 H~~~ 79 (316)
T PF00128_consen 76 HTSD 79 (316)
T ss_dssp EEET
T ss_pred cccc
Confidence 8763
No 35
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=87.58 E-value=3.9 Score=47.34 Aligned_cols=107 Identities=17% Similarity=0.265 Sum_probs=69.4
Q ss_pred HHHHHHHcCCcEEEEEeeCC---C----------ccceecCCCCCCCcCCCCCCCCC----CHHHHHHHHHHHHHcCCEE
Q 008945 211 VIDSMAYAKLNVLHWHIVDT---Q----------SFPLEIPSYPKLWDGAYSTSERY----TMADAAEIVSYAQKRGINV 273 (548)
Q Consensus 211 ~Id~ma~~KlN~lh~HltDd---q----------~frle~~~~P~L~~Ga~~~~~~Y----T~~di~elv~yA~~rgI~V 273 (548)
.||.+..+++|.+++=..=+ + .|.+..- .-+.....| +.+|+|+||+-|.++||+|
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~-------~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~V 261 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTL-------GFFAPEPRYLASGQVAEFKTMVRALHDAGIEV 261 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcc-------cccccChhhcCCCCHHHHHHHHHHHHHCCCEE
Confidence 58899999999999843210 0 0211111 111233445 6899999999999999999
Q ss_pred EEccCCCchhhHHHhhCCC----------C---CC--------CCCCCCCCCCCChHHHHHHHHHHHHHhhhc
Q 008945 274 LAELDVPGHALSWGKGYPS----------L---WP--------SKDCQEPLDVSNEFTFKVIDGILSDFSKVF 325 (548)
Q Consensus 274 IPEID~PGH~~a~~~~~p~----------l---~~--------~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF 325 (548)
|-.+ ++.|+..-....|. + .+ ...|...+|..+|.+.+++.+.+.-...-|
T Consensus 262 IlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~ 333 (688)
T TIGR02100 262 ILDV-VYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEM 333 (688)
T ss_pred EEEE-CcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHc
Confidence 9998 78888642111110 0 00 112445689999999999998888777543
No 36
>PF03648 Glyco_hydro_67N: Glycosyl hydrolase family 67 N-terminus; InterPro: IPR005154 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This represents a family of alpha-glucuronidases (GH67 from CAZY). Deletion mutants have indicated that the central region is responsible for the catalytic activity. Within this central domain, the invariant Glu and Asp (residues 391 and 364 respectively from Bacillus stearothermophilus (Geobacillus stearothermophilus)) are thought to from the the catalytic centre [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=87.26 E-value=3.1 Score=37.16 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=25.5
Q ss_pred CCCCeEEEeeCCCCCeEEEEEecCchhhHHHHHH
Q 008945 127 IDESYKLLVPSPDKPTYAHLEAQTVYGALHGLQT 160 (548)
Q Consensus 127 ~~E~Y~L~i~~~~~~~~i~I~a~~~~G~~~gl~T 160 (548)
.+|||.|+.-..+....+.|.|++..|++||+=.
T Consensus 88 ~~EGy~I~~v~~~~~~~lvI~g~~~~G~LYGvF~ 121 (122)
T PF03648_consen 88 GEEGYIIRTVEIGGKNVLVIAGKTERGVLYGVFH 121 (122)
T ss_dssp STT-EEEEEEESSSSEEEEEEESSHHHHHHHHHH
T ss_pred CCccEEEEEEecCCCCEEEEEeCCCcEEEEEEee
Confidence 5999999993222223599999999999999743
No 37
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=86.96 E-value=1.8 Score=47.76 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=59.0
Q ss_pred cceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHH---HHHHHHHHHHc
Q 008945 193 GLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMAD---AAEIVSYAQKR 269 (548)
Q Consensus 193 G~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~d---i~elv~yA~~r 269 (548)
|+.-....+++.++.-|.+.+.+...+||++..-..||---| .+| ++-|+-+| ++.||+-||+.
T Consensus 20 GVvEGFYGRPWt~EQRK~LFrrl~~~gl~tYlYAPKDDyKHR-------~~W------RElY~vEEa~~L~~Li~aAke~ 86 (891)
T KOG3698|consen 20 GVVEGFYGRPWTPEQRKHLFRRLNQLGLTTYLYAPKDDYKHR-------SLW------RELYNVEEATYLRNLIEAAKEN 86 (891)
T ss_pred EeeccccCCCCCHHHHHHHHHHHHhcccceeeecccchhHHH-------HHH------HHHhhhHHHHHHHHHHHHHHhc
Confidence 555556688899999999999999999999999988884322 122 34477665 78899999999
Q ss_pred CCEEEEccCCCc
Q 008945 270 GINVLAELDVPG 281 (548)
Q Consensus 270 gI~VIPEID~PG 281 (548)
||+.|-.| +||
T Consensus 87 ~i~F~YAi-SPG 97 (891)
T KOG3698|consen 87 NINFVYAI-SPG 97 (891)
T ss_pred CceEEEEc-CCC
Confidence 99999887 454
No 38
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=86.53 E-value=2.3 Score=47.90 Aligned_cols=114 Identities=21% Similarity=0.292 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEee---CCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 008945 204 PLPIIKNVIDSMAYAKLNVLHWHIV---DTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVP 280 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh~Hlt---Ddq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~P 280 (548)
.+.-|.+-+|.++.+++|.+++-.- ......+.+..|=.+ ...+=|.+|+++||+.|.++||+||-.+ +|
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~i------d~~~Gt~~~~~~lv~~ah~~gi~vilD~-v~ 97 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAI------NPLFGTMADFEELVSEAKKRNIKIMLDM-VF 97 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCcc------CcccCCHHHHHHHHHHHHHCCCEEEEEE-Cc
Confidence 5677788889999999999998431 101111111111111 0112288999999999999999999998 88
Q ss_pred chhhH---HHh-h------CCCCC---------CCCC-------------------------CCCCCCCCChHHHHHHHH
Q 008945 281 GHALS---WGK-G------YPSLW---------PSKD-------------------------CQEPLDVSNEFTFKVIDG 316 (548)
Q Consensus 281 GH~~a---~~~-~------~p~l~---------~~~~-------------------------~~~~ld~~~~~t~~~l~~ 316 (548)
.|+.. |.+ + |.+.. +... ..-.||..||++.+.+.+
T Consensus 98 NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~ 177 (543)
T TIGR02403 98 NHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKD 177 (543)
T ss_pred cccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHH
Confidence 89863 221 1 11110 0000 011388899999999999
Q ss_pred HHHHHhhh
Q 008945 317 ILSDFSKV 324 (548)
Q Consensus 317 v~~E~~~l 324 (548)
+++-..+.
T Consensus 178 ~~~~W~~~ 185 (543)
T TIGR02403 178 VVNFWRDK 185 (543)
T ss_pred HHHHHHHc
Confidence 98887753
No 39
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=86.14 E-value=3.9 Score=44.17 Aligned_cols=164 Identities=11% Similarity=0.071 Sum_probs=87.8
Q ss_pred hhhHHHHHHHHHHHhhccCCCeEEeeccceEEecCCCCccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCC
Q 008945 152 YGALHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQ 231 (548)
Q Consensus 152 ~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq 231 (548)
.|+--..+.+..+++.........-...|+....| -++..| ++-+.|+++++.++.++++.|.+ | .
T Consensus 14 ~gl~~~s~~~h~~~r~~~~~~~~~~~~~pv~~nsW-----~~~~~d-----~~e~~i~~~a~~~~~~G~e~fvi---D-D 79 (394)
T PF02065_consen 14 QGLNGMSQRFHRFVRRHLLRPPWRDKPPPVGWNSW-----EAYYFD-----ITEEKILELADAAAELGYEYFVI---D-D 79 (394)
T ss_dssp BHHHHHHHHHHHHHHHHTSTTTTTTSS--EEEESH-----HHHTTG-------HHHHHHHHHHHHHHT-SEEEE-----S
T ss_pred CCHHHHHHHHHHHHHHhcCCCccCCCCCceEEEcc-----cccCcC-----CCHHHHHHHHHHHHHhCCEEEEE---c-C
Confidence 56666666666666643111100001123334443 233333 56899999999999999999988 4 4
Q ss_pred ccceec-CCCCCCCcCCCCCC-CCCCHHHHHHHHHHHHHcCCEE--EEccCCCchhhHHHhhCCCCCCC--C----CCCC
Q 008945 232 SFPLEI-PSYPKLWDGAYSTS-ERYTMADAAEIVSYAQKRGINV--LAELDVPGHALSWGKGYPSLWPS--K----DCQE 301 (548)
Q Consensus 232 ~frle~-~~~P~L~~Ga~~~~-~~YT~~di~elv~yA~~rgI~V--IPEID~PGH~~a~~~~~p~l~~~--~----~~~~ 301 (548)
||--.- ..... .|-+..+ ..+- .-++.|+++.+++|+.. --|..+-+--..+.+.||+..-. . ...+
T Consensus 80 GW~~~r~~d~~~--~GdW~~~~~kFP-~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~ 156 (394)
T PF02065_consen 80 GWFGGRDDDNAG--LGDWEPDPKKFP-NGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRN 156 (394)
T ss_dssp SSBCTESTTTST--TSBECBBTTTST-THHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTT
T ss_pred ccccccCCCccc--CCceeEChhhhC-CcHHHHHHHHHHCCCeEEEEeccccccchhHHHHhCccceeecCCCCCcCccc
Confidence 663210 01111 1222111 1221 24999999999999873 22333333334445567764211 0 1112
Q ss_pred --CCCCCChHHHHHHHHHHHHHhhhccCceeEe
Q 008945 302 --PLDVSNEFTFKVIDGILSDFSKVFKYKFVHL 332 (548)
Q Consensus 302 --~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHi 332 (548)
.||+++|++.+++.+.++.+.+-..-.||=+
T Consensus 157 ~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~ 189 (394)
T PF02065_consen 157 QYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKW 189 (394)
T ss_dssp BEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred ceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 5999999999999999988866555455444
No 40
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=85.25 E-value=6.4 Score=44.93 Aligned_cols=132 Identities=15% Similarity=0.223 Sum_probs=75.8
Q ss_pred ccceecCCCC-CCChHHHHHHHHHHHHcCCcEEEEEeeCC------------CccceecCCCCCCCcCCCCCC---CCCC
Q 008945 192 RGLLIDTSRH-YQPLPIIKNVIDSMAYAKLNVLHWHIVDT------------QSFPLEIPSYPKLWDGAYSTS---ERYT 255 (548)
Q Consensus 192 RG~mlD~aR~-f~~~~~lk~~Id~ma~~KlN~lh~HltDd------------q~frle~~~~P~L~~Ga~~~~---~~YT 255 (548)
||-...++.+ -....-+.+.||.+..+++|.+++=..=+ .+|.+....|=.. .+.|..+ +.-+
T Consensus 149 ~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~-~~~y~~~p~~~~~~ 227 (605)
T TIGR02104 149 KGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVP-EGSYSTNPYDPATR 227 (605)
T ss_pred CCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCc-ChhhhcCCCccchH
Confidence 5554444422 11234566789999999999999843211 1233322211000 0111110 1112
Q ss_pred HHHHHHHHHHHHHcCCEEEEccCCCchhhH-----HHhhCCCCC----C------CCCCCCCCCCCChHHHHHHHHHHHH
Q 008945 256 MADAAEIVSYAQKRGINVLAELDVPGHALS-----WGKGYPSLW----P------SKDCQEPLDVSNEFTFKVIDGILSD 320 (548)
Q Consensus 256 ~~di~elv~yA~~rgI~VIPEID~PGH~~a-----~~~~~p~l~----~------~~~~~~~ld~~~~~t~~~l~~v~~E 320 (548)
.+|+|+||+-|.++||+||-.+ ++.|+.. +....|... + ...|...++..+|++.+++.+.++-
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDv-V~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~ 306 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDV-VYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLY 306 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-EcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHH
Confidence 5899999999999999999999 8889852 111122221 0 1123345677789999988888777
Q ss_pred Hhhhc
Q 008945 321 FSKVF 325 (548)
Q Consensus 321 ~~~lF 325 (548)
..+-|
T Consensus 307 W~~e~ 311 (605)
T TIGR02104 307 WVKEY 311 (605)
T ss_pred HHHHc
Confidence 66543
No 41
>PRK03705 glycogen debranching enzyme; Provisional
Probab=84.32 E-value=8.1 Score=44.55 Aligned_cols=108 Identities=16% Similarity=0.211 Sum_probs=69.8
Q ss_pred HHHHHHHcCCcEEEEEeeCCC-------------ccceecCCCCCCCcCCCCCCCCCC------HHHHHHHHHHHHHcCC
Q 008945 211 VIDSMAYAKLNVLHWHIVDTQ-------------SFPLEIPSYPKLWDGAYSTSERYT------MADAAEIVSYAQKRGI 271 (548)
Q Consensus 211 ~Id~ma~~KlN~lh~HltDdq-------------~frle~~~~P~L~~Ga~~~~~~YT------~~di~elv~yA~~rgI 271 (548)
.||.+..+++|.+++=..-+. .|.+.... -|.....|. .+|+|+||+-|.++||
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~-------yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI 256 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLA-------MFALDPAYASGPETALDEFRDAVKALHKAGI 256 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccc-------ccccccccCCCCcchHHHHHHHHHHHHHCCC
Confidence 488999999999999532110 01111111 112333443 4799999999999999
Q ss_pred EEEEccCCCchhhHHHhhCCCC-------------CC------CCCCCCCCCCCChHHHHHHHHHHHHHhhhcc
Q 008945 272 NVLAELDVPGHALSWGKGYPSL-------------WP------SKDCQEPLDVSNEFTFKVIDGILSDFSKVFK 326 (548)
Q Consensus 272 ~VIPEID~PGH~~a~~~~~p~l-------------~~------~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~ 326 (548)
+||-.+ ++.|+.......|.+ .. ...|...||..+|.+.+++.+.++-..+-|.
T Consensus 257 ~VIlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~g 329 (658)
T PRK03705 257 EVILDV-VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCH 329 (658)
T ss_pred EEEEEE-cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhC
Confidence 999998 888986421111111 00 1124457889999999999999988877543
No 42
>PRK10785 maltodextrin glucosidase; Provisional
Probab=84.25 E-value=3.9 Score=46.59 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=54.9
Q ss_pred CCCCC--hHHHHHHHHHHHHcCCcEEEEEee-CC-CccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 200 RHYQP--LPIIKNVIDSMAYAKLNVLHWHIV-DT-QSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 200 R~f~~--~~~lk~~Id~ma~~KlN~lh~Hlt-Dd-q~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+.|+. +.-|.+-||.++.++.|.+++-.- +. ..+++....|=++. ..+=|.+|+++||+-|.+|||+||-
T Consensus 171 ~~f~GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iD------p~~Gt~~df~~Lv~~aH~rGikVil 244 (598)
T PRK10785 171 STFYGGDLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVD------PQLGGDAALLRLRHATQQRGMRLVL 244 (598)
T ss_pred ccccCcCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccC------cccCCHHHHHHHHHHHHHCCCEEEE
Confidence 45665 888999999999999999999532 11 01122222221111 1112789999999999999999999
Q ss_pred ccCCCchhhH
Q 008945 276 ELDVPGHALS 285 (548)
Q Consensus 276 EID~PGH~~a 285 (548)
.+ ++.|++.
T Consensus 245 D~-V~NH~~~ 253 (598)
T PRK10785 245 DG-VFNHTGD 253 (598)
T ss_pred EE-CCCcCCC
Confidence 98 8889874
No 43
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=83.92 E-value=6.7 Score=40.58 Aligned_cols=121 Identities=21% Similarity=0.248 Sum_probs=75.0
Q ss_pred CCCCccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCC-------ccceecCCCCCCCcCCCCCCCCCCHHH
Q 008945 186 QPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQ-------SFPLEIPSYPKLWDGAYSTSERYTMAD 258 (548)
Q Consensus 186 ~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq-------~frle~~~~P~L~~Ga~~~~~~YT~~d 258 (548)
-|++.+ |++.--- .+.+-+.++++++.+...++..=.+.+-|+- .|-+....|| |
T Consensus 6 ~P~wa~-G~~~~~~-~y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FP----------------d 67 (308)
T cd06593 6 PPAWSF-GLWLSRS-FYYDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFP----------------D 67 (308)
T ss_pred CchHHH-HHHHHcc-cCCCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCC----------------C
Confidence 356665 6654332 4588999999999999999887666654421 1222222232 4
Q ss_pred HHHHHHHHHHcCCEEEEccC------CCchhhHHHhh----CCCCCC-C----CCCCCCCCCCChHHHHHHHHHHHHHhh
Q 008945 259 AAEIVSYAQKRGINVLAELD------VPGHALSWGKG----YPSLWP-S----KDCQEPLDVSNEFTFKVIDGILSDFSK 323 (548)
Q Consensus 259 i~elv~yA~~rgI~VIPEID------~PGH~~a~~~~----~p~l~~-~----~~~~~~ld~~~~~t~~~l~~v~~E~~~ 323 (548)
.+++++..+++|++++.-++ .|-+.+...+. .++-.+ . ......+|.+||++.++..+.++++.+
T Consensus 68 ~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~ 147 (308)
T cd06593 68 PEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD 147 (308)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999998664 22111111110 010000 0 001235899999999999999998876
Q ss_pred h
Q 008945 324 V 324 (548)
Q Consensus 324 l 324 (548)
.
T Consensus 148 ~ 148 (308)
T cd06593 148 M 148 (308)
T ss_pred h
Confidence 3
No 44
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=83.20 E-value=19 Score=43.95 Aligned_cols=120 Identities=15% Similarity=0.249 Sum_probs=72.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEeeCCC----------------------ccceecCCCCCCCcCCCCC---CCCCCHHH
Q 008945 204 PLPIIKNVIDSMAYAKLNVLHWHIVDTQ----------------------SFPLEIPSYPKLWDGAYST---SERYTMAD 258 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh~HltDdq----------------------~frle~~~~P~L~~Ga~~~---~~~YT~~d 258 (548)
+..-|.+-||.+..+++|.+||-..=+- .|.+..-.|=.+ .+.|+. .+.-+.+|
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfap-e~~Ygtdp~dp~~ri~E 556 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFAL-SGMYSEDPKDPELRIAE 556 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCccc-ccccccCCcCccccHHH
Confidence 3455666689999999999999654110 122211111000 122221 11123589
Q ss_pred HHHHHHHHHHcCCEEEEccCCCchhhHH---HhhCCCCC----C-----CCCCCCCCCCCChHHHHHHHHHHHHHhhhc
Q 008945 259 AAEIVSYAQKRGINVLAELDVPGHALSW---GKGYPSLW----P-----SKDCQEPLDVSNEFTFKVIDGILSDFSKVF 325 (548)
Q Consensus 259 i~elv~yA~~rgI~VIPEID~PGH~~a~---~~~~p~l~----~-----~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF 325 (548)
+|+||+-|.++||+||-.+ ++.|+... ....|... . ...|.+.++..++.+.+++.+.+.-..+-|
T Consensus 557 fK~LV~alH~~GI~VILDV-VyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey 634 (1111)
T TIGR02102 557 FKNLINEIHKRGMGVILDV-VYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEF 634 (1111)
T ss_pred HHHHHHHHHHCCCEEEEec-ccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998 88998642 12223221 0 112334577778888888888777776544
No 45
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=81.91 E-value=5.4 Score=44.13 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEee-CCCc----cceecCCCCCCC----cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 205 LPIIKNVIDSMAYAKLNVLHWHIV-DTQS----FPLEIPSYPKLW----DGAYSTSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 205 ~~~lk~~Id~ma~~KlN~lh~Hlt-Ddq~----frle~~~~P~L~----~Ga~~~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
-..|.+-||.++.+++|.+.+=.. .+.+ +.+....|=.|. +|. -...+=|.+|+++||+-|.+|||+||-
T Consensus 21 ~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~-id~~fGt~~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 21 WNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGT-VRTKYGTKEELLNAIDALHENGIKVYA 99 (479)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCC-cCcCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 345777789999999999988431 1110 111111111110 000 001112899999999999999999999
Q ss_pred ccCCCchhhH
Q 008945 276 ELDVPGHALS 285 (548)
Q Consensus 276 EID~PGH~~a 285 (548)
.+ ++.|+..
T Consensus 100 D~-V~NH~~~ 108 (479)
T PRK09441 100 DV-VLNHKAG 108 (479)
T ss_pred EE-CcccccC
Confidence 99 8999873
No 46
>PLN02187 rooty/superroot1
Probab=81.19 E-value=3.9 Score=45.00 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..||.+++++|++.|+++||-||-
T Consensus 217 TG~v~s~e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 217 CGNVYSHDHLKKVAETARKLGIMVIS 242 (462)
T ss_pred CCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 45679999999999999999998774
No 47
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=81.11 E-value=4.6 Score=45.36 Aligned_cols=74 Identities=20% Similarity=0.312 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEeeCC---CccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 008945 204 PLPIIKNVIDSMAYAKLNVLHWHIVDT---QSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVP 280 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh~HltDd---q~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~P 280 (548)
.+.-|.+-||.++.+++|.+++=..=. ..+.+....|=.+. ..+=|.+|+++||+-|.++||+||-.+ ++
T Consensus 26 dl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd------~~~Gt~~df~~Lv~~ah~~Gi~vilD~-V~ 98 (539)
T TIGR02456 26 DFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAIL------PEFGTIDDFKDFVDEAHARGMRVIIDL-VL 98 (539)
T ss_pred CHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccC------hhhCCHHHHHHHHHHHHHCCCEEEEEe-cc
Confidence 467788889999999999999843210 01111111111110 111178999999999999999999998 89
Q ss_pred chhh
Q 008945 281 GHAL 284 (548)
Q Consensus 281 GH~~ 284 (548)
.|++
T Consensus 99 NH~s 102 (539)
T TIGR02456 99 NHTS 102 (539)
T ss_pred CcCC
Confidence 9986
No 48
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=80.67 E-value=5.8 Score=46.87 Aligned_cols=76 Identities=9% Similarity=0.130 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEee----CCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccC
Q 008945 203 QPLPIIKNVIDSMAYAKLNVLHWHIV----DTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELD 278 (548)
Q Consensus 203 ~~~~~lk~~Id~ma~~KlN~lh~Hlt----Ddq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID 278 (548)
++.+.+.+.++.++.+++|.+.+-.- ....+.+.+..|-.+. ...=|.+|++++++-|+++||.||-.|
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~id------p~lGt~e~f~~Lv~aah~~Gi~VIlDi- 89 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRIN------PELGGEEGLRRLAAALRAHGMGLILDI- 89 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcC------CCCCCHHHHHHHHHHHHHCCCEEEEEe-
Confidence 56778899999999999999988542 1112223333332221 111178999999999999999999999
Q ss_pred CCchhhH
Q 008945 279 VPGHALS 285 (548)
Q Consensus 279 ~PGH~~a 285 (548)
+|.|++.
T Consensus 90 V~NH~~~ 96 (879)
T PRK14511 90 VPNHMAV 96 (879)
T ss_pred ccccccC
Confidence 8999873
No 49
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=79.62 E-value=6.5 Score=44.36 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEee---CCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 008945 204 PLPIIKNVIDSMAYAKLNVLHWHIV---DTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVP 280 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh~Hlt---Ddq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~P 280 (548)
.+.-|.+-||.++.++.|.+++-.. ....+.+....|=.+ ...+=|.+|+++||+-|.++||.||-.+ ++
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~i------d~~~Gt~~d~~~lv~~~h~~gi~vilD~-V~ 103 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAI------DPTYGTLDDFDELVAQAKSRGIRIILDM-VF 103 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCc------CcccCCHHHHHHHHHHHHHCCCEEEEEE-CC
Confidence 4677778899999999999998431 111111111111111 1112288999999999999999999999 88
Q ss_pred chhhH
Q 008945 281 GHALS 285 (548)
Q Consensus 281 GH~~a 285 (548)
.|+..
T Consensus 104 NH~s~ 108 (551)
T PRK10933 104 NHTST 108 (551)
T ss_pred CCccC
Confidence 89864
No 50
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=79.39 E-value=7.7 Score=45.62 Aligned_cols=77 Identities=10% Similarity=0.128 Sum_probs=54.6
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEEee----CCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEcc
Q 008945 202 YQPLPIIKNVIDSMAYAKLNVLHWHIV----DTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 277 (548)
Q Consensus 202 f~~~~~lk~~Id~ma~~KlN~lh~Hlt----Ddq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEI 277 (548)
=++.+.+.+.|+.++.+++|.+++=.- +...+.+.+..|-.+. ..+=|.+|++++++-|+++||.||-.|
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~id------p~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEIN------PELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcC------CCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 356788999999999999999987431 1112223222222221 111279999999999999999999998
Q ss_pred CCCchhhH
Q 008945 278 DVPGHALS 285 (548)
Q Consensus 278 D~PGH~~a 285 (548)
+|.|+..
T Consensus 86 -VpNH~a~ 92 (825)
T TIGR02401 86 -VPNHMAV 92 (825)
T ss_pred -ccccccc
Confidence 8999873
No 51
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=79.17 E-value=15 Score=45.39 Aligned_cols=110 Identities=18% Similarity=0.221 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCcEEEEEeeCCCccceecCCCCC--CC-------cCCCCCCCCC---CHHHHHHHHHHHHHcCCEEEEcc
Q 008945 210 NVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPK--LW-------DGAYSTSERY---TMADAAEIVSYAQKRGINVLAEL 277 (548)
Q Consensus 210 ~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~--L~-------~Ga~~~~~~Y---T~~di~elv~yA~~rgI~VIPEI 277 (548)
+.|+.+..+++|.+++=..-. +.-+ ...+. ++ .+-+.....| |.+|+|++|+-|.++||+||-.+
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~--~~~~-~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFA--SVDE-HHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccc--cCcc-cccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 567899999999999843210 0000 00000 00 0111233445 79999999999999999999998
Q ss_pred CCCchhhHHHhhCCCC-------------CC--------CCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 008945 278 DVPGHALSWGKGYPSL-------------WP--------SKDCQEPLDVSNEFTFKVIDGILSDFSK 323 (548)
Q Consensus 278 D~PGH~~a~~~~~p~l-------------~~--------~~~~~~~ld~~~~~t~~~l~~v~~E~~~ 323 (548)
++.|+..-....|.+ .+ ...|.+.+|..++.+.+++.+.++-..+
T Consensus 268 -V~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~ 333 (1221)
T PRK14510 268 -VFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK 333 (1221)
T ss_pred -ccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH
Confidence 888986421111111 00 0123445777889999888888777665
No 52
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=79.08 E-value=5.8 Score=45.45 Aligned_cols=107 Identities=18% Similarity=0.268 Sum_probs=69.4
Q ss_pred HHHHHHHHHHcCCcEEEEEeeCCC-----ccceecCCCCCCCcCCCCCCCCC-CHH------HHHHHHHHHHHcCCEEEE
Q 008945 208 IKNVIDSMAYAKLNVLHWHIVDTQ-----SFPLEIPSYPKLWDGAYSTSERY-TMA------DAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 208 lk~~Id~ma~~KlN~lh~HltDdq-----~frle~~~~P~L~~Ga~~~~~~Y-T~~------di~elv~yA~~rgI~VIP 275 (548)
..+.|..+..+++|.+||-..=.. +|.+..-. =+.+..+| |.+ |+|+||+-|..+||+|+-
T Consensus 257 teKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~n-------FFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlL 329 (757)
T KOG0470|consen 257 TEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTN-------FFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLL 329 (757)
T ss_pred hhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeE-------eecccccccCCCcccchHHHHHHHHHHhhCCcEEeh
Confidence 456678888899999999654222 22221110 01222333 555 999999999999999999
Q ss_pred ccCCCchhhHHHhhCCC--C---------------CCCCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 008945 276 ELDVPGHALSWGKGYPS--L---------------WPSKDCQEPLDVSNEFTFKVIDGILSDFSK 323 (548)
Q Consensus 276 EID~PGH~~a~~~~~p~--l---------------~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~ 323 (548)
+| +-.|+.. ....|. + .....|...+|...+.+.+||-+=++=...
T Consensus 330 DV-V~sHaa~-n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVt 392 (757)
T KOG0470|consen 330 DV-VHSHAAK-NSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVT 392 (757)
T ss_pred hh-hhhhccc-CcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHH
Confidence 99 7888876 222211 1 111236678999999999998776555544
No 53
>PLN02784 alpha-amylase
Probab=78.12 E-value=9.8 Score=44.81 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=57.0
Q ss_pred ccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEee-CCC-ccceecCCCCCCCcCCCCCCC-CCCHHHHHHHHHHHHH
Q 008945 192 RGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIV-DTQ-SFPLEIPSYPKLWDGAYSTSE-RYTMADAAEIVSYAQK 268 (548)
Q Consensus 192 RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~Hlt-Ddq-~frle~~~~P~L~~Ga~~~~~-~YT~~di~elv~yA~~ 268 (548)
.||.-|+-..--=-..|++-++.++.+++|.+++-.. ... .+.+....| |.-+. +=|.+|++++|+-|++
T Consensus 507 QgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~-------y~lds~yGT~~ELk~LI~a~H~ 579 (894)
T PLN02784 507 QGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDL-------YNLNSRYGTIDELKDLVKSFHE 579 (894)
T ss_pred EeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccc-------cccCcCcCCHHHHHHHHHHHHH
Confidence 4555555433111567889999999999999998642 100 011111111 11122 2389999999999999
Q ss_pred cCCEEEEccCCCchhhHH
Q 008945 269 RGINVLAELDVPGHALSW 286 (548)
Q Consensus 269 rgI~VIPEID~PGH~~a~ 286 (548)
+||.||-.| ++.|+...
T Consensus 580 ~GIkVIlDi-ViNH~ag~ 596 (894)
T PLN02784 580 VGIKVLGDA-VLNHRCAH 596 (894)
T ss_pred CCCEEEEEE-Cccccccc
Confidence 999999999 88998643
No 54
>PRK08636 aspartate aminotransferase; Provisional
Probab=77.10 E-value=9.1 Score=40.99 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
.+..||.+++++|++.|+++++-||
T Consensus 188 TG~~~s~~~~~~l~~~a~~~~~~II 212 (403)
T PRK08636 188 TTATVEKSFYERLVALAKKERFYII 212 (403)
T ss_pred CCccCCHHHHHHHHHHHHHcCcEEE
Confidence 4568999999999999999999877
No 55
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=76.84 E-value=6.2 Score=42.54 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..||++++++|+++|++++|-||=
T Consensus 176 TGav~~~~~l~~i~~~a~~~~i~ii~ 201 (393)
T COG0436 176 TGAVYSKEELKAIVELAREHDIIIIS 201 (393)
T ss_pred cCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 35679999999999999999999885
No 56
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=76.75 E-value=4.9 Score=43.68 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..|+.+++++|++.|+++||-||=
T Consensus 203 tG~v~~~~~l~~i~~~a~~~~i~ii~ 228 (430)
T PLN00145 203 CGSVYSYEHLAKIAETARKLGILVIA 228 (430)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 35679999999999999999998874
No 57
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=76.39 E-value=8.8 Score=40.93 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=39.0
Q ss_pred eCCCccceecCCCCCCCc----------CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhh
Q 008945 228 VDTQSFPLEIPSYPKLWD----------GAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHAL 284 (548)
Q Consensus 228 tDdq~frle~~~~P~L~~----------Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~ 284 (548)
--.++|++.++..-.|.. -....+.+||.+-+++|.+.|+++||.||-. ++-||+-
T Consensus 180 LPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaD-EVY~~~v 245 (447)
T KOG0259|consen 180 LPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIAD-EVYGHTV 245 (447)
T ss_pred cCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEeh-hhcceee
Confidence 345567776655444431 1123577999999999999999999999974 3566654
No 58
>PLN02877 alpha-amylase/limit dextrinase
Probab=75.99 E-value=33 Score=41.19 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEccCCCchhh
Q 008945 256 MADAAEIVSYAQKRGINVLAELDVPGHAL 284 (548)
Q Consensus 256 ~~di~elv~yA~~rgI~VIPEID~PGH~~ 284 (548)
-.|+|++|+-+.++||+||-.+ ++-|+.
T Consensus 465 I~efk~mV~~lH~~GI~VImDV-VyNHt~ 492 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDV-VYNHLH 492 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-CCcccc
Confidence 4799999999999999999988 889985
No 59
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=74.04 E-value=22 Score=37.15 Aligned_cols=119 Identities=11% Similarity=0.115 Sum_probs=72.9
Q ss_pred CCCCccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCC-----------CccceecCCCCCCCcCCCCCCCCC
Q 008945 186 QPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDT-----------QSFPLEIPSYPKLWDGAYSTSERY 254 (548)
Q Consensus 186 ~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDd-----------q~frle~~~~P~L~~Ga~~~~~~Y 254 (548)
-|++.+ |++.-. -.|.+-+++.++++.+...++-+=.+++.++ ..|.+.-..||
T Consensus 6 ~P~wa~-G~~~s~-~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FP------------- 70 (317)
T cd06598 6 PPRWAL-GNWASR-FGYRNWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFP------------- 70 (317)
T ss_pred CchHHH-HHHHhc-CCCCCHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCC-------------
Confidence 466666 666433 2456899999999999999887444444321 02222222232
Q ss_pred CHHHHHHHHHHHHHcCCEEEEccCCC---ch---hhHHHhhCCCCCC--C---------CCCCCCCCCCChHHHHHHHHH
Q 008945 255 TMADAAEIVSYAQKRGINVLAELDVP---GH---ALSWGKGYPSLWP--S---------KDCQEPLDVSNEFTFKVIDGI 317 (548)
Q Consensus 255 T~~di~elv~yA~~rgI~VIPEID~P---GH---~~a~~~~~p~l~~--~---------~~~~~~ld~~~~~t~~~l~~v 317 (548)
|.+++++.-+++||+|++-|+-- .+ .+...+.+= +.. . ......+|.+||++.+...+.
T Consensus 71 ---dp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~l-~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 146 (317)
T cd06598 71 ---DPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGAL-LKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDN 146 (317)
T ss_pred ---CHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCCE-EEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHH
Confidence 56789999999999999987521 11 111111110 000 0 001235899999999999999
Q ss_pred HHHHhh
Q 008945 318 LSDFSK 323 (548)
Q Consensus 318 ~~E~~~ 323 (548)
++++.+
T Consensus 147 ~~~~~~ 152 (317)
T cd06598 147 YKKLID 152 (317)
T ss_pred HHHhhh
Confidence 988754
No 60
>PLN00196 alpha-amylase; Provisional
Probab=73.76 E-value=13 Score=40.71 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEee----CCCccceecCCCCCCCcCCCCCC--CCCCHHHHHHHHHHHHHcCCEEEEccC
Q 008945 205 LPIIKNVIDSMAYAKLNVLHWHIV----DTQSFPLEIPSYPKLWDGAYSTS--ERYTMADAAEIVSYAQKRGINVLAELD 278 (548)
Q Consensus 205 ~~~lk~~Id~ma~~KlN~lh~Hlt----Ddq~frle~~~~P~L~~Ga~~~~--~~YT~~di~elv~yA~~rgI~VIPEID 278 (548)
...|.+-|+.++.++++.+.+=.. .++|+- | ..-|.-+ .+=|.+|+++||+-|+++||+||-.+
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~------~---~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv- 112 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYM------P---GRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI- 112 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCC------c---cccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE-
Confidence 456888899999999999988531 112220 0 0001111 22389999999999999999999999
Q ss_pred CCchhhH
Q 008945 279 VPGHALS 285 (548)
Q Consensus 279 ~PGH~~a 285 (548)
++.|+.+
T Consensus 113 V~NH~~~ 119 (428)
T PLN00196 113 VINHRTA 119 (428)
T ss_pred CccCccc
Confidence 8999874
No 61
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=72.84 E-value=22 Score=36.84 Aligned_cols=109 Identities=14% Similarity=0.143 Sum_probs=67.1
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEccCC
Q 008945 201 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYST-SERYTMADAAEIVSYAQKRGINVLAELDV 279 (548)
Q Consensus 201 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~-~~~YT~~di~elv~yA~~rgI~VIPEID~ 279 (548)
..++-+.|+++++.|..+++..=.+++-|+ |- +.+ |.+.. ...|. +.+++++.-+++|+++++-|+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~--w~---~~~-----g~f~~d~~~FP--dp~~mi~~l~~~G~k~~l~i~- 91 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDN--WE---TCY-----GDFDFDPTKFP--DPKGMIDQLHDLGFRVTLWVH- 91 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCC--cc---ccC-----CccccChhhCC--CHHHHHHHHHHCCCeEEEEEC-
Confidence 467899999999999999987555555332 31 111 11211 12333 588999999999999998664
Q ss_pred Cchhh---HHHh-hCCCC-C--CCC----------CCCCCCCCCChHHHHHHHHHHHHHh
Q 008945 280 PGHAL---SWGK-GYPSL-W--PSK----------DCQEPLDVSNEFTFKVIDGILSDFS 322 (548)
Q Consensus 280 PGH~~---a~~~-~~p~l-~--~~~----------~~~~~ld~~~~~t~~~l~~v~~E~~ 322 (548)
|.-.. .+.. ...++ . +++ .....+|.+||++.+...+.++++.
T Consensus 92 P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (303)
T cd06592 92 PFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred CeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHH
Confidence 32111 0110 00111 0 000 1123589999999999999999887
No 62
>PLN02361 alpha-amylase
Probab=72.81 E-value=13 Score=40.17 Aligned_cols=72 Identities=10% Similarity=0.114 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEEee-CCCccceecCCCCCCCcCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEccCCCchh
Q 008945 206 PIIKNVIDSMAYAKLNVLHWHIV-DTQSFPLEIPSYPKLWDGAYSTS-ERYTMADAAEIVSYAQKRGINVLAELDVPGHA 283 (548)
Q Consensus 206 ~~lk~~Id~ma~~KlN~lh~Hlt-Ddq~frle~~~~P~L~~Ga~~~~-~~YT~~di~elv~yA~~rgI~VIPEID~PGH~ 283 (548)
..|++-++.++.++++.+.+=.. ++.+. -.|.- ..-|.-+ .+=|.+|++++|+-|+++||+||-.+ ++-|+
T Consensus 29 ~~i~~kl~~l~~lG~t~iwl~P~~~~~~~----~GY~~--~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~-V~NH~ 101 (401)
T PLN02361 29 RNLEGKVPDLAKSGFTSAWLPPPSQSLAP----EGYLP--QNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI-VINHR 101 (401)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCcCCCC----CCCCc--ccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE-ccccc
Confidence 66788899999999999988532 11000 00100 0001111 22289999999999999999999998 77887
Q ss_pred h
Q 008945 284 L 284 (548)
Q Consensus 284 ~ 284 (548)
.
T Consensus 102 ~ 102 (401)
T PLN02361 102 V 102 (401)
T ss_pred c
Confidence 4
No 63
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=71.00 E-value=26 Score=38.10 Aligned_cols=133 Identities=19% Similarity=0.188 Sum_probs=75.6
Q ss_pred CCCCccccceecCCCC-CCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHH
Q 008945 186 QPRFSFRGLLIDTSRH-YQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVS 264 (548)
Q Consensus 186 ~P~f~~RG~mlD~aR~-f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~ 264 (548)
-|++.+ |+++ +|. +.+.+.++++|+.|...++-.=.+++.++-+. .+...+- ....|. +.+++++
T Consensus 25 pP~wal-G~~~--~~~~~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-----~~~~f~~----d~~~FP--d~~~~~~ 90 (441)
T PF01055_consen 25 PPRWAL-GFWQ--SRWGYYNQDEVREVIDRYRSNGIPLDVIWIDDDYQD-----GYGDFTW----DPERFP--DPKQMID 90 (441)
T ss_dssp --GGGG-SEEE--EESTBTSHHHHHHHHHHHHHTT--EEEEEE-GGGSB-----TTBTT-B-----TTTTT--THHHHHH
T ss_pred Cchhhh-ceEe--ecCcCCCHHHHHHHHHHHHHcCCCccceeccccccc-----ccccccc----cccccc--chHHHHH
Confidence 477877 8888 443 45799999999999999999777776544111 1111110 111222 7899999
Q ss_pred HHHHcCCEEEEccCC----Cch-hhHH--HhhCCCCCCCCC-----------CCCCCCCCChHHHHHHHHHHHHHhhhcc
Q 008945 265 YAQKRGINVLAELDV----PGH-ALSW--GKGYPSLWPSKD-----------CQEPLDVSNEFTFKVIDGILSDFSKVFK 326 (548)
Q Consensus 265 yA~~rgI~VIPEID~----PGH-~~a~--~~~~p~l~~~~~-----------~~~~ld~~~~~t~~~l~~v~~E~~~lF~ 326 (548)
..+++||++++-++- ... .... .+..--+..+.. ....+|.++|++.++..+.++++.+.+.
T Consensus 91 ~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G 170 (441)
T PF01055_consen 91 ELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG 170 (441)
T ss_dssp HHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST
T ss_pred hHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC
Confidence 999999999876532 222 0111 111111111110 0225899999999999999999888754
Q ss_pred CceeEe
Q 008945 327 YKFVHL 332 (548)
Q Consensus 327 ~~~iHi 332 (548)
-..+=+
T Consensus 171 vdg~w~ 176 (441)
T PF01055_consen 171 VDGWWL 176 (441)
T ss_dssp -SEEEE
T ss_pred CceEEe
Confidence 333333
No 64
>PLN02368 alanine transaminase
Probab=70.99 E-value=8.9 Score=41.50 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..||++++++|++.|+++++-||-
T Consensus 223 TG~v~s~e~l~~l~~~a~~~~~~II~ 248 (407)
T PLN02368 223 TGQCLSEANLREILKFCYQERLVLLG 248 (407)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 45679999999999999999998874
No 65
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=70.58 E-value=19 Score=40.08 Aligned_cols=26 Identities=8% Similarity=0.281 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..||.+++++|++.|++++|-||=
T Consensus 212 TG~~~s~e~l~~L~~~a~~~~i~lI~ 237 (496)
T PLN02376 212 LGTMLDKDTLTNLVRFVTRKNIHLVV 237 (496)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 35679999999999999999998664
No 66
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=70.25 E-value=7 Score=38.94 Aligned_cols=103 Identities=11% Similarity=-0.063 Sum_probs=60.0
Q ss_pred HHHHHHHHhhccCCCeEEeeccceEEecCCCCccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceec
Q 008945 158 LQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEI 237 (548)
Q Consensus 158 l~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~ 237 (548)
++.+.+++...+ +.+....+...++ ....||.+++..+..-..+.+++.|+.++..+...+..+. |..-+.
T Consensus 41 ~~~l~~~l~~~g----l~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~~----g~~~~~ 111 (254)
T TIGR03234 41 AEALKARLAAAG----LEQVLFNLPAGDW-AAGERGIACLPGREEEFREGVALAIAYARALGCPQVNCLA----GKRPAG 111 (254)
T ss_pred HHHHHHHHHHcC----CeEEEEeCCCCcc-ccCCCccccCCccHHHHHHHHHHHHHHHHHhCCCEEEECc----CCCCCC
Confidence 567777776542 2232110001121 2335666665554433368899999999999999887753 111000
Q ss_pred CCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEcc
Q 008945 238 PSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 277 (548)
Q Consensus 238 ~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEI 277 (548)
....+. .....+.++++++||++.||.+.-|-
T Consensus 112 ~~~~~~--------~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 112 VSPEEA--------RATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred CCHHHH--------HHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 000000 01124569999999999999999984
No 67
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=69.67 E-value=2.5 Score=43.65 Aligned_cols=129 Identities=12% Similarity=0.145 Sum_probs=74.4
Q ss_pred CCCeEEEeeCCCCCeEEEEEecCchhhHHHHHHHHHHHhhccCCCeEEeeccceEEecCCCCc-cccceecCCCCCCChH
Q 008945 128 DESYKLLVPSPDKPTYAHLEAQTVYGALHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFS-FRGLLIDTSRHYQPLP 206 (548)
Q Consensus 128 ~E~Y~L~i~~~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~-~RG~mlD~aR~f~~~~ 206 (548)
.+.|.+.++.+. |.++-.+..++||..--|.--. .++..+.+-+|- +|.|- |-+..||- -+|++..
T Consensus 88 ~~~ygwnit~~N----IalTnGSQs~fFYlfNlF~G~~-sdG~~k~illPL-------aPeYiGY~d~~l~~-d~fVs~k 154 (417)
T COG3977 88 RREYGWNITAQN----IALTNGSQSAFFYLFNLFAGRR-SDGTEKKILLPL-------APEYIGYADAGLEE-DLFVSAK 154 (417)
T ss_pred HHHhCCCCccce----eeecCCccchHHHHHHHhcCcc-CCCcceeEeecc-------ChhhccccccccCc-cceeecc
Confidence 678999999987 9999999999999886543322 222223333443 44442 44444432 2344421
Q ss_pred HHHHHHH-HHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEc
Q 008945 207 IIKNVID-SMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAE 276 (548)
Q Consensus 207 ~lk~~Id-~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPE 276 (548)
-=.++++ ..-.|....=|+|++++-|--.- +-|. ...+.++|.+|++.|.+.|+++||-+|-.
T Consensus 155 P~iel~~~g~FKY~vDF~~l~i~e~~g~ic~--SRPt-----NPTGNVlTdeE~~kldalA~~~giPliID 218 (417)
T COG3977 155 PNIELLPAGQFKYHVDFEHLHIGESTGAICV--SRPT-----NPTGNVLTDEELAKLDALARQHGIPLIID 218 (417)
T ss_pred CCcccccccceeeccCHHHcccccccceEEe--cCCC-----CCCCCcccHHHHHHHHHHhhhcCCcEEEe
Confidence 1111111 11123333456666655443221 1121 12467899999999999999999998853
No 68
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=69.43 E-value=21 Score=38.22 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..||.+++++|++.|+++++-||-
T Consensus 189 TG~~~s~~~~~~l~~~a~~~~~~iI~ 214 (409)
T PRK07590 189 TGTVLTKEQLKAWVDYAKENGSLILF 214 (409)
T ss_pred cCCcCCHHHHHHHHHHHHHcCeEEEE
Confidence 45689999999999999999997774
No 69
>PRK07681 aspartate aminotransferase; Provisional
Probab=69.43 E-value=13 Score=39.79 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
.+..||++++++|++.|+++++-||
T Consensus 179 TG~~~s~~~~~~i~~~a~~~~~~iI 203 (399)
T PRK07681 179 VPAMAHEDFFKEVIAFAKKHNIIVV 203 (399)
T ss_pred cCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 3567999999999999999999877
No 70
>PLN02656 tyrosine transaminase
Probab=69.12 E-value=14 Score=39.78 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
.+..||.+++++|++.|+++|+-||
T Consensus 182 tG~~~s~~~~~~i~~~a~~~~~~ii 206 (409)
T PLN02656 182 CGNVYSYQHLKKIAETAEKLKILVI 206 (409)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 3567999999999999999999877
No 71
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=68.83 E-value=16 Score=39.28 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..||.+++++|++.|+++++-||=
T Consensus 183 TG~~~s~~~~~~l~~~a~~~~~~ii~ 208 (409)
T PLN00143 183 CGSVYSYEHLNKIAETARKLGILVIA 208 (409)
T ss_pred CCCccCHHHHHHHHHHHHHcCCeEEE
Confidence 35679999999999999999998773
No 72
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=68.73 E-value=13 Score=42.42 Aligned_cols=70 Identities=10% Similarity=0.216 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCcEEEEEeeCCC----ccceecCCCCCCCcCCCC------CCCCCCHHHHHHHHHHHHHcCCEEEEccC
Q 008945 209 KNVIDSMAYAKLNVLHWHIVDTQ----SFPLEIPSYPKLWDGAYS------TSERYTMADAAEIVSYAQKRGINVLAELD 278 (548)
Q Consensus 209 k~~Id~ma~~KlN~lh~HltDdq----~frle~~~~P~L~~Ga~~------~~~~YT~~di~elv~yA~~rgI~VIPEID 278 (548)
..+-|.+...+++.+|+-..-.. ||.+- |.. .|.|. ...+=|.+|+++|++-|.+|||.||-++
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~t----P~~-D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~Dl- 150 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFT----PSI-DGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDI- 150 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCC----CCC-CCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEe-
Confidence 45677888899999998532110 11100 110 11111 1122399999999999999999999998
Q ss_pred CCchhh
Q 008945 279 VPGHAL 284 (548)
Q Consensus 279 ~PGH~~ 284 (548)
+|+|++
T Consensus 151 VpnHTs 156 (688)
T TIGR02455 151 IPAHTG 156 (688)
T ss_pred CCCCCC
Confidence 899987
No 73
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=68.45 E-value=63 Score=35.24 Aligned_cols=92 Identities=18% Similarity=0.289 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEeeCCCcc---ceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHH-HHcCCEEEEccCC
Q 008945 204 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSF---PLEIPSYPKLWDGAYSTSERYTMADAAEIVSYA-QKRGINVLAELDV 279 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~f---rle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA-~~rgI~VIPEID~ 279 (548)
|.+...+.++..+..++|.+|+=.--.-|- ++.+...=++...-+..+.-++.++++++|.-+ +++||-.+-.| +
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv-V 98 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV-V 98 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE-e
Confidence 356788889999999999999843111110 111111000000111234457889999999998 58999999988 7
Q ss_pred Cchhh---HHHhhCCCCCCC
Q 008945 280 PGHAL---SWGKGYPSLWPS 296 (548)
Q Consensus 280 PGH~~---a~~~~~p~l~~~ 296 (548)
.-|+. .|+..|||-+.+
T Consensus 99 ~NHtA~nS~Wl~eHPEagYN 118 (423)
T PF14701_consen 99 LNHTANNSPWLREHPEAGYN 118 (423)
T ss_pred eccCcCCChHHHhCcccccC
Confidence 77876 599999997543
No 74
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=67.98 E-value=32 Score=43.74 Aligned_cols=77 Identities=10% Similarity=0.076 Sum_probs=54.2
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEeeC----CCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEc
Q 008945 201 HYQPLPIIKNVIDSMAYAKLNVLHWHIVD----TQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAE 276 (548)
Q Consensus 201 ~f~~~~~lk~~Id~ma~~KlN~lh~HltD----dq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPE 276 (548)
.=++.+.+.+.|+.++.+++|.+.+-.-= ...+.+.+..|-.+. ..+=|.++++.|++-|+++||.||-.
T Consensus 753 ~~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~id------p~lG~~edf~~Lv~~ah~~Gi~vilD 826 (1693)
T PRK14507 753 KDFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQIN------PEIGGEEGFERFCAALKAHGLGQLLD 826 (1693)
T ss_pred CCCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccC------cccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34678999999999999999988874210 011112222222211 11127999999999999999999999
Q ss_pred cCCCchhh
Q 008945 277 LDVPGHAL 284 (548)
Q Consensus 277 ID~PGH~~ 284 (548)
| +|.|++
T Consensus 827 i-V~NH~~ 833 (1693)
T PRK14507 827 I-VPNHMG 833 (1693)
T ss_pred e-cccccC
Confidence 9 899997
No 75
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=67.33 E-value=81 Score=33.25 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=68.3
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEeeCC-----CccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 201 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDT-----QSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 201 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDd-----q~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+|.+-++++++++.+...++..=.+++.++ ..|.+.-+.||.. ..+++|+.-+++||+|++
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp--------------~~~~mi~~L~~~G~k~~~ 84 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGL--------------KMPEFVDELHANGQHYVP 84 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCc--------------cHHHHHHHHHHCCCEEEE
Confidence 466899999999999999998655555322 2333333334432 338899999999999988
Q ss_pred ccCCCchhh--------HHHhh-CCCC-C--CC---------CCCCCCCCCCChHHHHHHHHHHHHHhhh
Q 008945 276 ELDVPGHAL--------SWGKG-YPSL-W--PS---------KDCQEPLDVSNEFTFKVIDGILSDFSKV 324 (548)
Q Consensus 276 EID~PGH~~--------a~~~~-~p~l-~--~~---------~~~~~~ld~~~~~t~~~l~~v~~E~~~l 324 (548)
-|+ |+-.. .+..+ .-.+ . .. ......+|.+||++.+...+.++++.+-
T Consensus 85 ~i~-P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~ 153 (339)
T cd06602 85 ILD-PAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQ 153 (339)
T ss_pred EEe-CccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhc
Confidence 774 43221 11100 0000 0 00 0011347999999999999998887653
No 76
>PRK05839 hypothetical protein; Provisional
Probab=67.15 E-value=39 Score=35.73 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..|+.+++++|++.|+++||-||=
T Consensus 168 TG~~~s~~~l~~i~~~~~~~~~~ii~ 193 (374)
T PRK05839 168 TGRTLSLEELIEWVKLALKHDFILIN 193 (374)
T ss_pred cCcccCHHHHHHHHHHHHHcCCEEEe
Confidence 35679999999999999999998883
No 77
>PTZ00377 alanine aminotransferase; Provisional
Probab=67.14 E-value=19 Score=39.67 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..||.+++++|++.|+++++-||=
T Consensus 231 TG~~~s~e~~~~i~~~a~~~~~~iI~ 256 (481)
T PTZ00377 231 TGQVLTRDVMEEIIKFCYEKGIVLMA 256 (481)
T ss_pred CCcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 45679999999999999999997763
No 78
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=66.41 E-value=1e+02 Score=35.67 Aligned_cols=125 Identities=18% Similarity=0.256 Sum_probs=83.3
Q ss_pred CChHHHHHHHHHHHHcCCcEEEE-EeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEcc-CCC
Q 008945 203 QPLPIIKNVIDSMAYAKLNVLHW-HIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL-DVP 280 (548)
Q Consensus 203 ~~~~~lk~~Id~ma~~KlN~lh~-HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEI-D~P 280 (548)
+|-+.+++-|+.|...++|+.-. .+ +|.+- -|+. |.|. +|.-|.. +++-|..-||.||--- -+.
T Consensus 27 ~p~~~w~ddl~~mk~~G~N~V~ig~f----aW~~~---eP~e--G~fd----f~~~D~~-~l~~a~~~Gl~vil~t~P~g 92 (673)
T COG1874 27 WPRETWMDDLRKMKALGLNTVRIGYF----AWNLH---EPEE--GKFD----FTWLDEI-FLERAYKAGLYVILRTGPTG 92 (673)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEeeeE----Eeecc---Cccc--cccC----cccchHH-HHHHHHhcCceEEEecCCCC
Confidence 45688999999999999998776 44 34321 1222 3322 3444444 6999999999999665 355
Q ss_pred chhhHHHhhCCCCCC---C-----CCCCCCCCCCChHHHHHHHHHHHHHhhh-cc----CceeEecCCCCCC-CCC
Q 008945 281 GHALSWGKGYPSLWP---S-----KDCQEPLDVSNEFTFKVIDGILSDFSKV-FK----YKFVHLGGDEVNT-SCW 342 (548)
Q Consensus 281 GH~~a~~~~~p~l~~---~-----~~~~~~ld~~~~~t~~~l~~v~~E~~~l-F~----~~~iHiGgDEv~~-~~w 342 (548)
++.....+.||+... + ...-+.+|++++--.+.+..|++.+.+- +. --.+|+-- |+.. .||
T Consensus 93 ~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dn-eY~~~~~~ 167 (673)
T COG1874 93 APPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDN-EYGGHPCY 167 (673)
T ss_pred CCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccC-ccCCcccc
Confidence 666667788999842 1 1223469999997777888877777765 32 14566654 6654 565
No 79
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=66.04 E-value=21 Score=38.09 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..+|.+++++|++.|+++++-||=
T Consensus 185 TG~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 185 TGADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred CCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 35579999999999999999998774
No 80
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=66.02 E-value=13 Score=39.95 Aligned_cols=25 Identities=4% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 251 SERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 251 ~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+..+|.+++++|++.|+++++-||=
T Consensus 191 G~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 191 GSNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred CcccCHHHHHHHHHHHHHcCCeEEE
Confidence 4578999999999999999997763
No 81
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=65.76 E-value=12 Score=42.17 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=78.2
Q ss_pred ecCCCCccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCC--cCCCC--CCCCCCHHHH
Q 008945 184 NDQPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW--DGAYS--TSERYTMADA 259 (548)
Q Consensus 184 ~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~--~Ga~~--~~~~YT~~di 259 (548)
+|+-+||--|++=|..-. .+.+..++.|+.|+.+.+|.+++. |-.||-..|-.+... ...|. .+...+.+-|
T Consensus 97 sdW~~fPRYGfls~f~~~-~~~~~~~~~i~~L~~yHIN~~QFY---DW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~V 172 (559)
T PF13199_consen 97 SDWTRFPRYGFLSDFDKS-KSAEDIEAEIDQLNRYHINGLQFY---DWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTV 172 (559)
T ss_dssp SSTTSS--EEEE---GGG-GGHHHHHHHHHHHHHTT--EEEET---S--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHH
T ss_pred CCcccCCcceEecCCCCc-CCchhHHHHHHHHHhhCcCeEEEE---eeccccCCcCCCCCCchhhhhhhhcCCEehHHHH
Confidence 689999999998663322 345899999999999999999974 333332222111110 00110 2344678889
Q ss_pred HHHHHHHHHcCCEEEEccCCCchhhHHHh--hCCCC--C--CCC-------C----C--CCCCCCCChHHHHHHHHHHHH
Q 008945 260 AEIVSYAQKRGINVLAELDVPGHALSWGK--GYPSL--W--PSK-------D----C--QEPLDVSNEFTFKVIDGILSD 320 (548)
Q Consensus 260 ~elv~yA~~rgI~VIPEID~PGH~~a~~~--~~p~l--~--~~~-------~----~--~~~ld~~~~~t~~~l~~v~~E 320 (548)
|+.|+.|+++|+..++=.-+-|=...... ..|+- . ... . . .--+||+|++=.+.+-+=+.+
T Consensus 173 k~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~ 252 (559)
T PF13199_consen 173 KDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNK 252 (559)
T ss_dssp HHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcceehhHhhhccccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHH
Confidence 99999999999999987544443322111 01110 0 000 0 0 113689999988888887888
Q ss_pred HhhhccCceeEe
Q 008945 321 FSKVFKYKFVHL 332 (548)
Q Consensus 321 ~~~lF~~~~iHi 332 (548)
+.+.|.-.=|||
T Consensus 253 ~~~~~gFDG~hl 264 (559)
T PF13199_consen 253 AIQNFGFDGWHL 264 (559)
T ss_dssp HHHHHT--EEEE
T ss_pred HHHccCCceEee
Confidence 887777666665
No 82
>PRK06348 aspartate aminotransferase; Provisional
Probab=65.63 E-value=15 Score=38.94 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
.+..+|.+++++|++.|+++++-||
T Consensus 175 tG~~~s~~~~~~l~~~a~~~~~~ii 199 (384)
T PRK06348 175 TGAVFSKETLEEIAKIAIEYDLFII 199 (384)
T ss_pred CCcCCCHHHHHHHHHHHHHCCeEEE
Confidence 3567999999999999999999877
No 83
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=64.78 E-value=11 Score=36.05 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEeeCCCccc---eecCCCCCCCcCC--C------------CCCCCCCHHHHHHHHHHH
Q 008945 204 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFP---LEIPSYPKLWDGA--Y------------STSERYTMADAAEIVSYA 266 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr---le~~~~P~L~~Ga--~------------~~~~~YT~~di~elv~yA 266 (548)
+.+.++++++.+...++..+.+.+++..... .-.+.||++..|+ - ..+..-+.....++++++
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~~~~~~~~~ 93 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGLDPEVVKAA 93 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHH
Confidence 4788899999999999999999987664222 1123566542111 0 001111222346899999
Q ss_pred HHcCCEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcc-CceeEecCC
Q 008945 267 QKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFK-YKFVHLGGD 335 (548)
Q Consensus 267 ~~rgI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~-~~~iHiGgD 335 (548)
+.+|+.+||++.+|.++......-.++. .+.|..+...+ .++.+...|| -+.+=+||=
T Consensus 94 ~~~~~~~i~gv~t~~e~~~A~~~Gad~i-------~~~p~~~~g~~----~~~~l~~~~~~~p~~a~GGI 152 (190)
T cd00452 94 NRAGIPLLPGVATPTEIMQALELGADIV-------KLFPAEAVGPA----YIKALKGPFPQVRFMPTGGV 152 (190)
T ss_pred HHcCCcEECCcCCHHHHHHHHHCCCCEE-------EEcCCcccCHH----HHHHHHhhCCCCeEEEeCCC
Confidence 9999999999999988765544322221 12334433333 4555566776 588888884
No 84
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=64.09 E-value=2.8e+02 Score=32.23 Aligned_cols=159 Identities=11% Similarity=0.074 Sum_probs=87.3
Q ss_pred cccceecCCCCCCC-----hHHHHHHHHHHHHcCCcEEEEEeeCC---CccceecCCCCCCC-cCCCCCCCCCCHHHHHH
Q 008945 191 FRGLLIDTSRHYQP-----LPIIKNVIDSMAYAKLNVLHWHIVDT---QSFPLEIPSYPKLW-DGAYSTSERYTMADAAE 261 (548)
Q Consensus 191 ~RG~mlD~aR~f~~-----~~~lk~~Id~ma~~KlN~lh~HltDd---q~frle~~~~P~L~-~Ga~~~~~~YT~~di~e 261 (548)
.|-+|+|.---|-| .+.|-++||.|...|+|++-++.--| .|. ..+.-||.=. .| ...-|++=..
T Consensus 314 ~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~-~~s~yfP~~~lp~---r~d~f~~~aw-- 387 (671)
T PRK14582 314 QRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGL-VKELYFPNRLLPM---RADLFNRVAW-- 387 (671)
T ss_pred EEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCcc-ccccccCcccccc---ccCCcCHHHH--
Confidence 46667765433322 46788999999999999999987211 111 1222233200 01 1122333222
Q ss_pred HHHHHHHcCCEEEEccCCCchhh-----HHHhhCCCCCCC---CCCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEec
Q 008945 262 IVSYAQKRGINVLAELDVPGHAL-----SWGKGYPSLWPS---KDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLG 333 (548)
Q Consensus 262 lv~yA~~rgI~VIPEID~PGH~~-----a~~~~~p~l~~~---~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHiG 333 (548)
+.|.++||+|.--+.+-+=.. ......+...+. ......|+|.+|++.++|++|+.|++.-.+-.=||+=
T Consensus 388 --~l~~r~~v~v~AWmp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~~~~dGilf~ 465 (671)
T PRK14582 388 --QLRTRAGVNVYAWMPVLSFDLDPTLPRVKRLDTGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFH 465 (671)
T ss_pred --HHHHhhCCEEEEeccceeeccCCCcchhhhccccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHhCCCceEEec
Confidence 228889999976654443211 000000111110 0111249999999999999999999987666666665
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCC
Q 008945 334 GDEVNTSCWTLTPHVSKWLKEHSM 357 (548)
Q Consensus 334 gDEv~~~~w~~~p~~~~~~~~~g~ 357 (548)
-|=+-..-=..+|.-.+..++.|+
T Consensus 466 Dd~~l~d~ed~s~~a~~~~~~~g~ 489 (671)
T PRK14582 466 DDAVLSDYEDASAPAITAYQQAGF 489 (671)
T ss_pred ccccccccccCCHHHHHHHHHcCC
Confidence 555433312335554444555665
No 85
>PLN03244 alpha-amylase; Provisional
Probab=64.01 E-value=19 Score=42.22 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHH----h---hCCCCC-C-C--C----CCCCCCCCCChHHHHHHHHHH
Q 008945 254 YTMADAAEIVSYAQKRGINVLAELDVPGHALSWG----K---GYPSLW-P-S--K----DCQEPLDVSNEFTFKVIDGIL 318 (548)
Q Consensus 254 YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~----~---~~p~l~-~-~--~----~~~~~ld~~~~~t~~~l~~v~ 318 (548)
=|.+|+|.+|+-|.++||.||-.+ +++|+..-. . +-+.+. . . + -....+|..++++.+|+-+.+
T Consensus 438 GTPeDLK~LVD~aH~~GI~VILDv-V~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna 516 (872)
T PLN03244 438 GTPDDFKRLVDEAHGLGLLVFLDI-VHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNL 516 (872)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEe-cCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHH
Confidence 389999999999999999999998 789986311 1 112110 0 0 0 011358899999999999988
Q ss_pred HHHhhhc
Q 008945 319 SDFSKVF 325 (548)
Q Consensus 319 ~E~~~lF 325 (548)
.-.++-|
T Consensus 517 ~yWleEy 523 (872)
T PLN03244 517 NWWITEY 523 (872)
T ss_pred HHHHHHh
Confidence 8777654
No 86
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=63.64 E-value=61 Score=34.94 Aligned_cols=144 Identities=15% Similarity=0.252 Sum_probs=85.4
Q ss_pred EEEEecCchhhHHHHHHHHHHHhhccCCCeEEeeccceEEecCCCCcc---------ccceecCCCCC-CChHHHHHHHH
Q 008945 144 AHLEAQTVYGALHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSF---------RGLLIDTSRHY-QPLPIIKNVID 213 (548)
Q Consensus 144 i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~~---------RG~mlD~aR~f-~~~~~lk~~Id 213 (548)
|-+++ |+-.|+.++++|+-.+...+ +-+| |--+|-|.- -...||-.+++ +.++.|++.++
T Consensus 139 I~LT~----GAS~ai~~il~l~~~~~~~G-vliP-----iPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~ 208 (475)
T KOG0258|consen 139 IFLTT----GASPAIRSILSLLIAGKKTG-VLIP-----IPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVD 208 (475)
T ss_pred eeecC----CCcHHHHHHHHHHhcCCCCc-eEee-----cCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHH
Confidence 77775 77788899999998775433 2344 333555431 12345666665 34666666666
Q ss_pred HHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHhhCCCC
Q 008945 214 SMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSL 293 (548)
Q Consensus 214 ~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l 293 (548)
... -.+|.=-+-+-. |.- ..+...|.+-|++|+.+|++.|+-++..- .|-+-
T Consensus 209 eA~-k~i~~r~lvvIN--------PGN--------PTGqvls~e~ie~i~~fa~~~~l~llaDE-----------VYQ~N 260 (475)
T KOG0258|consen 209 EAR-KGINPRALVVIN--------PGN--------PTGQVLSEENIEGIICFAAEEGLVLLADE-----------VYQDN 260 (475)
T ss_pred HHh-ccCCceEEEEEC--------CCC--------ccchhhcHHHHHHHHHHHHHcCeEEechH-----------HHHhh
Confidence 655 444432222110 111 24568999999999999999999988641 12111
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhhccCc----eeEecCC
Q 008945 294 WPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYK----FVHLGGD 335 (548)
Q Consensus 294 ~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~----~iHiGgD 335 (548)
.. .+.+-+-=.++++.|+.+.+++. -||-+.-
T Consensus 261 --------vy--~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSK 296 (475)
T KOG0258|consen 261 --------VY--TTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSK 296 (475)
T ss_pred --------cc--CCCcchHhHHHHHHHhcCccCCceEEEeeecccc
Confidence 11 11223445688899998888753 3555443
No 87
>PLN02231 alanine transaminase
Probab=63.57 E-value=29 Score=39.01 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..||.+++++|++.|+++|+-||=
T Consensus 284 TG~vls~e~l~~Iv~~a~~~~l~lI~ 309 (534)
T PLN02231 284 TGQVLAEENQRDIVEFCKQEGLVLLA 309 (534)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 45689999999999999999998774
No 88
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=62.13 E-value=11 Score=38.09 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=44.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEcc
Q 008945 203 QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 277 (548)
Q Consensus 203 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEI 277 (548)
-.++.+++.|+.++..+.+.+-.|..... ... ....-....+-+++|+++|++.||+|.-|-
T Consensus 82 ~~~~~~~~~i~~A~~lG~~~v~~~~g~~~----------~~~---~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 82 KSIERLKDEIERCEELGIRLLVFHPGSYL----------GQS---KEEGLKRVIEALNELIDKAETKGVVIALET 143 (279)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCCC----------CCC---HHHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 34788999999999999998888763211 000 000001245789999999999999999884
No 89
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=62.01 E-value=28 Score=37.04 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
.+..||.+++++|++.|+++++-||
T Consensus 179 TG~~~s~~~~~~l~~~a~~~~~~ii 203 (396)
T PRK09147 179 TGAVLPLDDWKKLFALSDRYGFVIA 203 (396)
T ss_pred cCccCCHHHHHHHHHHHHHcCeEEE
Confidence 3567999999999999999999877
No 90
>PRK07337 aminotransferase; Validated
Probab=61.41 E-value=22 Score=37.74 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..+|.+|+++|++.|+++|+-||-
T Consensus 176 tG~~~~~~~~~~i~~~a~~~~~~ii~ 201 (388)
T PRK07337 176 TGTSIAPDELRRIVEAVRARGGFTIV 201 (388)
T ss_pred CCcCcCHHHHHHHHHHHHHCCCEEEE
Confidence 35679999999999999999997774
No 91
>PRK06290 aspartate aminotransferase; Provisional
Probab=61.06 E-value=20 Score=38.73 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
.+..||.+++++|++.|+++|+-||
T Consensus 192 TG~v~s~e~l~~l~~la~~~~~~iI 216 (410)
T PRK06290 192 TGAVATKEFYEEVVDFAKENNIIVV 216 (410)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 4567999999999999999999766
No 92
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=60.20 E-value=10 Score=39.37 Aligned_cols=66 Identities=17% Similarity=0.074 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHhhccCCCeEEeeccceEEecCCCCccccceecCC-CCCCChHHHHHHHHHHHHcCCcEE
Q 008945 153 GALHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRGLLIDTS-RHYQPLPIIKNVIDSMAYAKLNVL 223 (548)
Q Consensus 153 G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~~RG~mlD~a-R~f~~~~~lk~~Id~ma~~KlN~l 223 (548)
|.+.-+++|.+++..-..- .+....++++| .|+++|.--=.+ +.+++.++++++++..+..+++++
T Consensus 11 ~~~~~~~~lk~~id~ma~~---k~N~l~lhl~D--~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vI 77 (301)
T cd06565 11 NAVPKVSYLKKLLRLLALL---GANGLLLYYED--TFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVI 77 (301)
T ss_pred CCCCCHHHHHHHHHHHHHc---CCCEEEEEEec--ceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEE
Confidence 3677788999988753211 12222468899 788888643323 789999999999999999999876
No 93
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=58.64 E-value=1e+02 Score=32.53 Aligned_cols=131 Identities=13% Similarity=0.204 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHh
Q 008945 209 KNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGK 288 (548)
Q Consensus 209 k~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~ 288 (548)
+.+++.|+.+++|.+-+++=-|. . ..++.+.++..++.+.|++.|+.|...+ |
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~P----------~-------~~g~~~~~~~~~~akrak~~Gm~vlldf----H------ 79 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVNP----------Y-------DGGYNDLEDVIALAKRAKAAGMKVLLDF----H------ 79 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-----------T-------TTTTTSHHHHHHHHHHHHHTT-EEEEEE-----------
T ss_pred CCHHHHHHhcCCCeEEEEeccCC----------c-------ccccCCHHHHHHHHHHHHHCCCeEEEee----c------
Confidence 57888999999999999874331 1 1367899999999999999999999776 3
Q ss_pred hCCCCCCCCCC--------CCCCCCCChHHHHHHHHHHHHHhhhcc-CceeEecCCCCCCCCCCCCHHHHHHHHHCCCCh
Q 008945 289 GYPSLWPSKDC--------QEPLDVSNEFTFKVIDGILSDFSKVFK-YKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNE 359 (548)
Q Consensus 289 ~~p~l~~~~~~--------~~~ld~~~~~t~~~l~~v~~E~~~lF~-~~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~~ 359 (548)
|.+.+.++.. ...++-....++++.+++++++.+.-- ..++-||-.=-++.+|.... ...
T Consensus 80 -YSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~----------~~~ 148 (332)
T PF07745_consen 80 -YSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGK----------PSN 148 (332)
T ss_dssp -SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTC----------TT-
T ss_pred -ccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCC----------ccC
Confidence 5555422211 112333457788889999998876532 47788876444455663211 111
Q ss_pred hhHHHHHHHHHHHHHHHc
Q 008945 360 SQAYQYFVLQAQKIALLH 377 (548)
Q Consensus 360 ~~l~~~f~~~~~~~l~~~ 377 (548)
-+-+..+++.-.+-+++.
T Consensus 149 ~~~~a~ll~ag~~AVr~~ 166 (332)
T PF07745_consen 149 WDNLAKLLNAGIKAVREV 166 (332)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 245566666666666654
No 94
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=58.51 E-value=25 Score=37.40 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=41.9
Q ss_pred CCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCC
Q 008945 200 RHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDV 279 (548)
Q Consensus 200 R~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~ 279 (548)
+..++.+.++++|+.+...+. .+++++- ++.+...|+.+|+++++++|+.+ .|.|
T Consensus 43 ~~~~~~e~~~~ii~~~~~~g~--~~v~~~G---------------------GEPll~~~~~~il~~~~~~g~~~--~i~T 97 (378)
T PRK05301 43 GAELSTEEWIRVLREARALGA--LQLHFSG---------------------GEPLLRKDLEELVAHARELGLYT--NLIT 97 (378)
T ss_pred cCCCCHHHHHHHHHHHHHcCC--cEEEEEC---------------------CccCCchhHHHHHHHHHHcCCcE--EEEC
Confidence 456889999999999987764 4444432 33344568999999999999865 3556
Q ss_pred Cch
Q 008945 280 PGH 282 (548)
Q Consensus 280 PGH 282 (548)
=|.
T Consensus 98 NG~ 100 (378)
T PRK05301 98 SGV 100 (378)
T ss_pred CCc
Confidence 564
No 95
>PRK06855 aminotransferase; Validated
Probab=58.27 E-value=26 Score=37.98 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..||.+++++|++.|+++++-||=
T Consensus 184 TG~~~s~~~~~~l~~~a~~~~~~II~ 209 (433)
T PRK06855 184 TGAVYPKEILREIVDIAREYDLFIIC 209 (433)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 35689999999999999999998873
No 96
>PRK09265 aminotransferase AlaT; Validated
Probab=57.80 E-value=30 Score=37.01 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 251 SERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 251 ~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+..++.+++++|++.|+++|+-||-
T Consensus 182 G~~~~~~~~~~i~~~a~~~~~~ii~ 206 (404)
T PRK09265 182 GAVYSKELLEEIVEIARQHNLIIFA 206 (404)
T ss_pred CcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4579999999999999999998774
No 97
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.37 E-value=41 Score=33.12 Aligned_cols=118 Identities=9% Similarity=0.027 Sum_probs=78.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEeeCCCccce---ecCCC---CCCCcCCCCCCCCCCHHHHH-----------------
Q 008945 204 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPL---EIPSY---PKLWDGAYSTSERYTMADAA----------------- 260 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~frl---e~~~~---P~L~~Ga~~~~~~YT~~di~----------------- 260 (548)
+.+...++++.|..-++.++-+-++....... -.+.| |++..|+ +...|.+|++
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGa---GTV~~~~~~~~a~~aGA~FivsP~~~~ 99 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGA---GTVLDAVTARLAILAGAQFIVSPSFNR 99 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEee---eeCCCHHHHHHHHHcCCCEEECCCCCH
Confidence 78999999999999999999999875543321 11245 5665553 3456666655
Q ss_pred HHHHHHHHcCCEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcc-CceeEecCC
Q 008945 261 EIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFK-YKFVHLGGD 335 (548)
Q Consensus 261 elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~-~~~iHiGgD 335 (548)
+++++|+++||-+||-.-+|.-.......-.++. -+-|...-..++ ++.+...|| -+++=+||=
T Consensus 100 ~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~v-------klFPa~~~G~~~----ik~l~~~~p~ip~~atGGI 164 (213)
T PRK06552 100 ETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIV-------KLFPGSTLGPSF----IKAIKGPLPQVNVMVTGGV 164 (213)
T ss_pred HHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEE-------EECCcccCCHHH----HHHHhhhCCCCEEEEECCC
Confidence 7899999999999999999988766543222220 011112111223 455566777 588888884
No 98
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=57.28 E-value=19 Score=38.11 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
.+..||.+++++|++.|+++++-||
T Consensus 178 TG~~~s~~~~~~l~~~a~~~~~~ii 202 (388)
T PRK07366 178 TTAIAPLSFFQEAVAFCQQHDLVLV 202 (388)
T ss_pred CCccCCHHHHHHHHHHHHHcCeEEE
Confidence 3567999999999999999998776
No 99
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=57.02 E-value=42 Score=35.42 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
.+..||.+++++|++.|+++++-||
T Consensus 179 tG~~~~~~~~~~l~~~~~~~~~~ii 203 (385)
T PRK09276 179 TGAVADLEFFEEVVDFAKKYDIIVC 203 (385)
T ss_pred CCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 3567999999999999999999776
No 100
>PRK09505 malS alpha-amylase; Reviewed
Probab=56.44 E-value=34 Score=39.68 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEee-CC-Ccccee--cCCCCCCC-cCCCC------CCCCCCHHHHHHHHHHHHHcCCEE
Q 008945 205 LPIIKNVIDSMAYAKLNVLHWHIV-DT-QSFPLE--IPSYPKLW-DGAYS------TSERYTMADAAEIVSYAQKRGINV 273 (548)
Q Consensus 205 ~~~lk~~Id~ma~~KlN~lh~Hlt-Dd-q~frle--~~~~P~L~-~Ga~~------~~~~YT~~di~elv~yA~~rgI~V 273 (548)
+.-|.+-||.++..++|.+.+-.- ++ .++.-. ...+|.-+ .|-+. ...+=|.+|+++||+-|.+|||+|
T Consensus 229 l~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~V 308 (683)
T PRK09505 229 LRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRI 308 (683)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 777888899999999999987421 10 000000 00011111 01000 011227899999999999999999
Q ss_pred EEccCCCchhh
Q 008945 274 LAELDVPGHAL 284 (548)
Q Consensus 274 IPEID~PGH~~ 284 (548)
|-.+ ++.|+.
T Consensus 309 ilD~-V~NH~~ 318 (683)
T PRK09505 309 LFDV-VMNHTG 318 (683)
T ss_pred EEEE-CcCCCc
Confidence 9998 788987
No 101
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=55.36 E-value=32 Score=36.26 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=41.6
Q ss_pred CCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCC
Q 008945 200 RHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDV 279 (548)
Q Consensus 200 R~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~ 279 (548)
+..++.+.++++|+.+...+. ..++++. ++..-..|+.+|++||+++|+.+ .|.|
T Consensus 34 ~~~l~~e~~~~ii~~~~~~g~--~~v~~~G---------------------GEPll~~~~~~ii~~~~~~g~~~--~l~T 88 (358)
T TIGR02109 34 KAELTTEEWTDVLTQAAELGV--LQLHFSG---------------------GEPLARPDLVELVAHARRLGLYT--NLIT 88 (358)
T ss_pred cCCCCHHHHHHHHHHHHhcCC--cEEEEeC---------------------ccccccccHHHHHHHHHHcCCeE--EEEe
Confidence 456899999999999988765 4444443 22233467899999999999864 4556
Q ss_pred Cch
Q 008945 280 PGH 282 (548)
Q Consensus 280 PGH 282 (548)
-|.
T Consensus 89 NG~ 91 (358)
T TIGR02109 89 SGV 91 (358)
T ss_pred CCc
Confidence 665
No 102
>PRK08068 transaminase; Reviewed
Probab=54.82 E-value=23 Score=37.53 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
.+..||.+++++|++.|+++++-||
T Consensus 180 TG~~~s~~~~~~l~~la~~~~~~ii 204 (389)
T PRK08068 180 TGAVATKAFFEETVAFAKKHNIGVV 204 (389)
T ss_pred CCCcCCHHHHHHHHHHHHHcCeEEE
Confidence 4568999999999999999999777
No 103
>PLN00175 aminotransferase family protein; Provisional
Probab=54.36 E-value=32 Score=37.05 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..||.+++++|++.|+++++-||-
T Consensus 200 tG~~~s~~~l~~l~~~a~~~~~~ii~ 225 (413)
T PLN00175 200 TGKMFTREELELIASLCKENDVLAFT 225 (413)
T ss_pred CCcCCCHHHHHHHHHHHHHcCcEEEE
Confidence 35679999999999999999997763
No 104
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=54.33 E-value=1e+02 Score=32.13 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=66.2
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEeeCC-----CccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 201 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDT-----QSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 201 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDd-----q~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+|.+-++++++++.+..+++-.=.+++.++ ..|.+..+.|| |.+++++..+++||+|++
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FP----------------dp~~~i~~l~~~g~k~~~ 82 (317)
T cd06600 19 SYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMDSYRLFTWDPYRFP----------------EPKKLIDELHKRNVKLVT 82 (317)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcceEEEChhhhCCCCceeechhcCC----------------CHHHHHHHHHHCCCEEEE
Confidence 467799999999999999998666665322 12222222222 567999999999999987
Q ss_pred ccC----CCchhhHHHhhCC-C-CC--CCC---------CCCCCCCCCChHHHHHHHHHHHHHh
Q 008945 276 ELD----VPGHALSWGKGYP-S-LW--PSK---------DCQEPLDVSNEFTFKVIDGILSDFS 322 (548)
Q Consensus 276 EID----~PGH~~a~~~~~p-~-l~--~~~---------~~~~~ld~~~~~t~~~l~~v~~E~~ 322 (548)
-|+ ...+...+..+.. . ++ .++ .....+|.+||++.+...+.++++.
T Consensus 83 ~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~ 146 (317)
T cd06600 83 IVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWL 146 (317)
T ss_pred EeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 653 1111111111110 0 00 000 0112589999999999999998876
No 105
>PRK08363 alanine aminotransferase; Validated
Probab=53.76 E-value=31 Score=36.74 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 251 SERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 251 ~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+..++.+++++|++.|+++|+-||=
T Consensus 180 G~~~~~~~~~~l~~~a~~~~~~li~ 204 (398)
T PRK08363 180 GALYEKKTLKEILDIAGEHDLPVIS 204 (398)
T ss_pred CcCcCHHHHHHHHHHHHHcCeEEEE
Confidence 4568999999999999999987763
No 106
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=52.84 E-value=80 Score=33.71 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..||++++++|++.|+++++-||=
T Consensus 186 TG~~~s~~~~~~l~~~a~~~~~~iI~ 211 (402)
T TIGR03542 186 TGTVLTKEQLKELVDYANEHGSLILF 211 (402)
T ss_pred CCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 46689999999999999999998773
No 107
>PRK08960 hypothetical protein; Provisional
Probab=52.65 E-value=26 Score=37.13 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..++.+++++|++.|+++|+-||-
T Consensus 178 tG~~~~~~~~~~l~~~~~~~~~~li~ 203 (387)
T PRK08960 178 TGTLLSRDELAALSQALRARGGHLVV 203 (387)
T ss_pred CCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 45679999999999999999997764
No 108
>PRK07324 transaminase; Validated
Probab=52.61 E-value=41 Score=35.62 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 251 SERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 251 ~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+..++++++++|++.|+++|+-||-
T Consensus 167 G~~~~~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 167 GALMDRAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4578999999999999999998775
No 109
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=52.07 E-value=44 Score=34.49 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=36.9
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 201 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 201 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
..++++.|++.++....+.-+.=-+-++- +. ++ ..+..||.+|+++|.++|+++||.|.
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~--------t~--~~-----~GG~~~s~~el~ai~~~a~~~gl~lh 162 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLEN--------TT--EL-----AGGTVYSLEELRAISELAREHGLPLH 162 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEES--------SB--TT-----TTSB---HHHHHHHHHHHHHHT-EEE
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEe--------cC--cC-----CCCeeCCHHHHHHHHHHHHhCceEEE
Confidence 56799999999998776333333333321 11 11 13568999999999999999999876
No 110
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=51.91 E-value=11 Score=35.54 Aligned_cols=63 Identities=19% Similarity=0.179 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEcc
Q 008945 205 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 277 (548)
Q Consensus 205 ~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEI 277 (548)
++.+++.|+.++.++...+.+|... |+ ..+.... ...-....+-+++|+++|+++||+|..|-
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~---~~----~~~~~~~---~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR---YP----SGPEDDT---EENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT---ES----SSTTSSH---HHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc---cc----cccCCCH---HHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 7899999999999999999999642 10 0111100 00011245679999999999999999994
No 111
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=51.88 E-value=44 Score=41.61 Aligned_cols=82 Identities=12% Similarity=0.148 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEeeCCCc---cceecCCCCCCCcCCCCCCCC----CCHHHHHHHHHHHHHc-CCEEEEc
Q 008945 205 LPIIKNVIDSMAYAKLNVLHWHIVDTQS---FPLEIPSYPKLWDGAYSTSER----YTMADAAEIVSYAQKR-GINVLAE 276 (548)
Q Consensus 205 ~~~lk~~Id~ma~~KlN~lh~HltDdq~---frle~~~~P~L~~Ga~~~~~~----YT~~di~elv~yA~~r-gI~VIPE 276 (548)
.+...+.++.++..++|.+|+-.--..| =++.+..|=++ ...+ -+.+|++++|+-|.++ ||.+|-.
T Consensus 131 ~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~i------dP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilD 204 (1464)
T TIGR01531 131 LSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQL------NQHFKSQKDGKNDVQALVEKLHRDWNVLSITD 204 (1464)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhc------ChhhcccCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5778899999999999999984211000 00101010000 0111 3789999999999996 9999999
Q ss_pred cCCCchhh---HHHhhCCCC
Q 008945 277 LDVPGHAL---SWGKGYPSL 293 (548)
Q Consensus 277 ID~PGH~~---a~~~~~p~l 293 (548)
+ +..|++ .|+..|||-
T Consensus 205 v-V~NHTa~ds~Wl~eHPEa 223 (1464)
T TIGR01531 205 I-VFNHTANNSPWLLEHPEA 223 (1464)
T ss_pred e-eecccccCCHHHHhChHh
Confidence 8 888987 488888885
No 112
>PRK10658 putative alpha-glucosidase; Provisional
Probab=51.38 E-value=1.1e+02 Score=35.36 Aligned_cols=119 Identities=22% Similarity=0.347 Sum_probs=73.0
Q ss_pred CCCccccceecCCCC-CCChHHHHHHHHHHHHcCCcEEEEEeeCC--C-----ccceecCCCCCCCcCCCCCCCCCCHHH
Q 008945 187 PRFSFRGLLIDTSRH-YQPLPIIKNVIDSMAYAKLNVLHWHIVDT--Q-----SFPLEIPSYPKLWDGAYSTSERYTMAD 258 (548)
Q Consensus 187 P~f~~RG~mlD~aR~-f~~~~~lk~~Id~ma~~KlN~lh~HltDd--q-----~frle~~~~P~L~~Ga~~~~~~YT~~d 258 (548)
|++.+ |+.+-.+.. -++-+.+.++++.|...++-.=.+|+..+ . .|.+.-+.|| |
T Consensus 264 P~Wal-G~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FP----------------d 326 (665)
T PRK10658 264 PAWSF-GLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFP----------------D 326 (665)
T ss_pred chhhh-heeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCC----------------C
Confidence 77776 777755332 25677899999999999988555555321 0 1222222222 4
Q ss_pred HHHHHHHHHHcCCEEEEccCC---Cchh---hHHHhhC----CC-------CCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 008945 259 AAEIVSYAQKRGINVLAELDV---PGHA---LSWGKGY----PS-------LWPSKDCQEPLDVSNEFTFKVIDGILSDF 321 (548)
Q Consensus 259 i~elv~yA~~rgI~VIPEID~---PGH~---~a~~~~~----p~-------l~~~~~~~~~ld~~~~~t~~~l~~v~~E~ 321 (548)
.+++++.-+++||+|+.-|+- +.+. ++..+.| ++ .++ .....+|.+||++.+...+.++++
T Consensus 327 p~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W~--g~~~~~Dftnp~ar~W~~~~~~~l 404 (665)
T PRK10658 327 PEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLKRPDGSVWQWDKWQ--PGMAIVDFTNPDACKWYADKLKGL 404 (665)
T ss_pred HHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEECCCCCEeeeeecC--CCceeecCCCHHHHHHHHHHHHHH
Confidence 578899999999999977652 1111 1111111 10 011 012358999999999999999888
Q ss_pred hhh
Q 008945 322 SKV 324 (548)
Q Consensus 322 ~~l 324 (548)
.++
T Consensus 405 ~d~ 407 (665)
T PRK10658 405 LDM 407 (665)
T ss_pred Hhc
Confidence 664
No 113
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=51.20 E-value=1.3e+02 Score=31.59 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhh
Q 008945 205 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHAL 284 (548)
Q Consensus 205 ~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~ 284 (548)
.+.-+|=|..|..++.|++.++-.| |.+ .++ +....-++-||-||-.++.|+.
T Consensus 52 ~~~C~rDi~~l~~LgiNtIRVY~vd-----------p~~-----------nHd---~CM~~~~~aGIYvi~Dl~~p~~-- 104 (314)
T PF03198_consen 52 PEACKRDIPLLKELGINTIRVYSVD-----------PSK-----------NHD---ECMSAFADAGIYVILDLNTPNG-- 104 (314)
T ss_dssp HHHHHHHHHHHHHHT-SEEEES--------------TTS-------------H---HHHHHHHHTT-EEEEES-BTTB--
T ss_pred HHHHHHhHHHHHHcCCCEEEEEEeC-----------CCC-----------CHH---HHHHHHHhCCCEEEEecCCCCc--
Confidence 5678899999999999999997655 222 233 4444456789999999999943
Q ss_pred HHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEecCCCCCCCCCCCCHHHHHHHHHCCCChhhHHH
Q 008945 285 SWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNESQAYQ 364 (548)
Q Consensus 285 a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~ 364 (548)
++-+..|.-+ =+..-++-...+++.++. ++...=-.-|.||.... . +........
T Consensus 105 sI~r~~P~~s-----------w~~~l~~~~~~vid~fa~-Y~N~LgFf~GNEVin~~--~-----------~t~aap~vK 159 (314)
T PF03198_consen 105 SINRSDPAPS-----------WNTDLLDRYFAVIDAFAK-YDNTLGFFAGNEVINDA--S-----------NTNAAPYVK 159 (314)
T ss_dssp S--TTS-----------------HHHHHHHHHHHHHHTT--TTEEEEEEEESSS-ST--T------------GGGHHHHH
T ss_pred cccCCCCcCC-----------CCHHHHHHHHHHHHHhcc-CCceEEEEecceeecCC--C-----------CcccHHHHH
Confidence 3333333110 022334445555555443 34444444556775431 0 111123445
Q ss_pred HHHHHHHHHHHHcCCe--EEEc
Q 008945 365 YFVLQAQKIALLHGYE--IVNW 384 (548)
Q Consensus 365 ~f~~~~~~~l~~~g~~--~~~W 384 (548)
..++.+.++++++|.+ |++.
T Consensus 160 AavRD~K~Yi~~~~~R~IPVGY 181 (314)
T PF03198_consen 160 AAVRDMKAYIKSKGYRSIPVGY 181 (314)
T ss_dssp HHHHHHHHHHHHSSS----EEE
T ss_pred HHHHHHHHHHHhcCCCCCceeE
Confidence 5677788888888865 4555
No 114
>PRK05942 aspartate aminotransferase; Provisional
Probab=51.01 E-value=44 Score=35.52 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..+|.+++++|++.|+++|+-||=
T Consensus 183 tG~~~s~~~~~~i~~~a~~~~~~iI~ 208 (394)
T PRK05942 183 TTATAPREFFEEIVAFARKYEIMLVH 208 (394)
T ss_pred CCCcCCHHHHHHHHHHHHHcCeEEEE
Confidence 35679999999999999999998873
No 115
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=50.53 E-value=50 Score=39.52 Aligned_cols=28 Identities=29% Similarity=0.441 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCEEEEccCCCchhhH
Q 008945 257 ADAAEIVSYAQKRGINVLAELDVPGHALS 285 (548)
Q Consensus 257 ~di~elv~yA~~rgI~VIPEID~PGH~~a 285 (548)
+|+|++|+-|.++||+||-.+ ++-|+..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV-VyNHt~~ 431 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV-VYNHTNA 431 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe-ecccccc
Confidence 699999999999999999998 7888764
No 116
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=50.21 E-value=1e+02 Score=33.75 Aligned_cols=63 Identities=16% Similarity=0.303 Sum_probs=39.9
Q ss_pred cCCCCC-CChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 197 DTSRHY-QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 197 D~aR~f-~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
|...+| +.++.+++.++....-+.++=-+.++. |..| .+..|+++++++|++.|++++|-||=
T Consensus 175 ~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~n--------P~NP--------tG~~~s~e~l~~l~~~~~~~~i~lI~ 238 (447)
T PLN02607 175 DSSNNFQVTPQALEAAYQEAEAANIRVRGVLITN--------PSNP--------LGATVQRSVLEDILDFVVRKNIHLVS 238 (447)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeC--------CCCC--------cCcccCHHHHHHHHHHHHHCCCEEEE
Confidence 334455 457777777765444444432222221 2222 35679999999999999999999884
No 117
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=49.78 E-value=58 Score=34.37 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
.+..||.+++++|++.|+++++-||
T Consensus 177 tG~~~~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 177 TGAVAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred cCccCCHHHHHHHHHHHHHcCEEEE
Confidence 3567999999999999999999776
No 118
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=49.65 E-value=46 Score=34.77 Aligned_cols=128 Identities=17% Similarity=0.217 Sum_probs=70.7
Q ss_pred CCCCccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCC-CCCCCCHHHHHHHHH
Q 008945 186 QPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYS-TSERYTMADAAEIVS 264 (548)
Q Consensus 186 ~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~-~~~~YT~~di~elv~ 264 (548)
-|++.+.+.+ +|.+.+-+.++++++.|...++-.=.+||-|.....-....+ ... ..++ ....| .|.+++|+
T Consensus 6 ~P~wa~G~~~---~~~~~s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~-~~~-~~f~~d~~~F--Pdp~~mi~ 78 (317)
T cd06594 6 LPDWAYGGAI---LGLQGGTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGD-RLW-WNWEWDPERY--PGLDELIE 78 (317)
T ss_pred CchhhhCcEE---eeeeCCHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccc-eee-eeeEEChhhC--CCHHHHHH
Confidence 4666666555 354559999999999999998876555553322110000000 000 0000 01112 25789999
Q ss_pred HHHHcCCEEEEccCCCchhh---H-HHhhC-CC-CC--CCC---------CCCCCCCCCChHHHHHHHHHHHHH
Q 008945 265 YAQKRGINVLAELDVPGHAL---S-WGKGY-PS-LW--PSK---------DCQEPLDVSNEFTFKVIDGILSDF 321 (548)
Q Consensus 265 yA~~rgI~VIPEID~PGH~~---a-~~~~~-p~-l~--~~~---------~~~~~ld~~~~~t~~~l~~v~~E~ 321 (548)
.-+++|++|++-|+ |+-.. . ...+. .+ |. +++ .....+|.+||++.+...+.++++
T Consensus 79 ~Lh~~G~~~~~~i~-P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 151 (317)
T cd06594 79 ELKARGIRVLTYIN-PYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEM 151 (317)
T ss_pred HHHHCCCEEEEEec-CceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHH
Confidence 99999999998775 43211 0 00000 00 00 000 011347889999999888888776
No 119
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.35 E-value=1.9e+02 Score=29.67 Aligned_cols=117 Identities=17% Similarity=0.291 Sum_probs=68.8
Q ss_pred CCCCccccceecCCC-CCCChHHHHHHHHHHHHcCCcEEEEEeeCC-C-------------ccceecCCCCCCCcCCCCC
Q 008945 186 QPRFSFRGLLIDTSR-HYQPLPIIKNVIDSMAYAKLNVLHWHIVDT-Q-------------SFPLEIPSYPKLWDGAYST 250 (548)
Q Consensus 186 ~P~f~~RG~mlD~aR-~f~~~~~lk~~Id~ma~~KlN~lh~HltDd-q-------------~frle~~~~P~L~~Ga~~~ 250 (548)
-|++.+ |++. +| .+.+-+.++++++.+...++-.=.+|+-++ . .|.+.-..|
T Consensus 7 ~P~wal-G~~q--sr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~F---------- 73 (292)
T cd06595 7 LPRYAF-GNWW--SRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLF---------- 73 (292)
T ss_pred CchHHH-HhHh--hCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcC----------
Confidence 466666 7774 45 467999999999999999888555554222 1 122222222
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhh-HHHhhCCCCC------CCCCCCCCCCCCChHHHHHH-HHHHHHHh
Q 008945 251 SERYTMADAAEIVSYAQKRGINVLAELDVPGHAL-SWGKGYPSLW------PSKDCQEPLDVSNEFTFKVI-DGILSDFS 322 (548)
Q Consensus 251 ~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~-a~~~~~p~l~------~~~~~~~~ld~~~~~t~~~l-~~v~~E~~ 322 (548)
.|.+++++.-++.|++||.-++ |+... .-...|.++. ........+|.+||++.+.. +.+.+.+.
T Consensus 74 ------Pdp~~mi~~Lh~~G~k~v~~v~-P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~ 146 (292)
T cd06595 74 ------PDPEKLLQDLHDRGLKVTLNLH-PADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLE 146 (292)
T ss_pred ------CCHHHHHHHHHHCCCEEEEEeC-CCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHH
Confidence 2668899999999999997663 33210 0000112111 00001126899999999854 44444443
No 120
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=48.15 E-value=59 Score=32.58 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEcc
Q 008945 204 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 277 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEI 277 (548)
.++.+++.|+..+..+...+.+|.... ++.- ...+. -.-..+-+++|.++|+++||++.-|-
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~~---~~~~~--------~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHA-GYLT---PPNVI--------WGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCC-CCCC---CHHHH--------HHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 367899999999999999999986532 2110 00000 00123468999999999999999885
No 121
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=48.07 E-value=2e+02 Score=29.25 Aligned_cols=148 Identities=18% Similarity=0.324 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEccCC-Cchhh---HHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhc--cCce
Q 008945 256 MADAAEIVSYAQKRGINVLAELDV-PGHAL---SWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVF--KYKF 329 (548)
Q Consensus 256 ~~di~elv~yA~~rgI~VIPEID~-PGH~~---a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF--~~~~ 329 (548)
.+|..++++-|++.||..+--+-+ +.+.. ...+.||.+...- .-.|.+ ..... ++-++++.++. ..+.
T Consensus 16 ~~d~~~vi~~a~~~gv~~~~~~g~~~~~~~~~~~la~~y~~v~~~~-G~HP~~-~~~~~----~~~~~~l~~~~~~~~~v 89 (256)
T COG0084 16 DEDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYPNVYAAV-GVHPLD-ADEHS----EEDLEELEQLAEHHPKV 89 (256)
T ss_pred cCCHHHHHHHHHHcCCcEEEEeecCHHHHHHHHHHHHhCCCeEEEE-eeCCCc-ccccc----HHHHHHHHHHHhcCCCe
Confidence 357788999999999875443322 22222 3445788663210 011222 11211 22233333333 2455
Q ss_pred eEecCCCCCC-CCCCCCHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHcCCeEEE-----cccchhccC-CCCCCCeEEE
Q 008945 330 VHLGGDEVNT-SCWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVN-----WEETFNNFG-NKLSPKTVVH 402 (548)
Q Consensus 330 iHiGgDEv~~-~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~l~~~g~~~~~-----W~d~~~~~~-~~l~~~~iv~ 402 (548)
+=|| |+-. -.|...+ ..+.|..++.+-.+..++.++..++ |+|.+.-.. ...+...|++
T Consensus 90 vaIG--EiGLDy~~~~~~------------~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~~~~gi~H 155 (256)
T COG0084 90 VAIG--EIGLDYYWDKEP------------DKERQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGAPVGGVLH 155 (256)
T ss_pred EEEE--ecccCccccccc------------cHHHHHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHhcCCCCCEEEE
Confidence 5555 3321 1233322 1234544555555667788876554 555443211 1235778888
Q ss_pred ecCCC-cHHHHHHHhcCcEEEe
Q 008945 403 NWLGG-GVAQRVVAAGLRCIVS 423 (548)
Q Consensus 403 ~W~~~-~~~~~~~~~Gy~vI~s 423 (548)
.++|+ +.++++++.||-+=.|
T Consensus 156 cFsGs~e~a~~~~d~G~yisis 177 (256)
T COG0084 156 CFSGSAEEARKLLDLGFYISIS 177 (256)
T ss_pred ccCCCHHHHHHHHHcCeEEEEC
Confidence 88876 5788899999655443
No 122
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=47.85 E-value=78 Score=33.18 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..||.+++++|++.|+++++-||=
T Consensus 154 tG~~~~~~~~~~l~~~a~~~~~~ii~ 179 (354)
T PRK06358 154 TGQLISKEEMKKILDKCEKRNIYLII 179 (354)
T ss_pred CCCccCHHHHHHHHHHHHhcCCEEEE
Confidence 45679999999999999999998773
No 123
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=47.71 E-value=1.3e+02 Score=31.28 Aligned_cols=116 Identities=10% Similarity=0.107 Sum_probs=67.7
Q ss_pred CCCccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCC----Cc---cceecCCCCCCCcCCCCCCCCCCHHHH
Q 008945 187 PRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDT----QS---FPLEIPSYPKLWDGAYSTSERYTMADA 259 (548)
Q Consensus 187 P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDd----q~---frle~~~~P~L~~Ga~~~~~~YT~~di 259 (548)
|++.+ |++.-- -.|.+.+.++++++.+..+++..=.+++-.+ .+ |-+.-+.|| +.
T Consensus 7 P~wal-G~~~sr-~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FP----------------dp 68 (319)
T cd06591 7 PKWAY-GFWQSK-ERYKTQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFP----------------DP 68 (319)
T ss_pred chHHH-HHHHhc-ccCCCHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCC----------------CH
Confidence 44444 555422 2456899999999999999888655555322 11 222222222 56
Q ss_pred HHHHHHHHHcCCEEEEccCCCchh---hHHHhhC-CCC-CCC--C--------CCCCCCCCCChHHHHHHHHHHHHH
Q 008945 260 AEIVSYAQKRGINVLAELDVPGHA---LSWGKGY-PSL-WPS--K--------DCQEPLDVSNEFTFKVIDGILSDF 321 (548)
Q Consensus 260 ~elv~yA~~rgI~VIPEID~PGH~---~a~~~~~-p~l-~~~--~--------~~~~~ld~~~~~t~~~l~~v~~E~ 321 (548)
+++++..+++||+||+-|+ |+=. ..+.... ..+ ..+ + .....+|.+||++.+...+.+++.
T Consensus 69 ~~mi~~L~~~G~kv~~~i~-P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~ 144 (319)
T cd06591 69 KAMVRELHEMNAELMISIW-PTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKN 144 (319)
T ss_pred HHHHHHHHHCCCEEEEEec-CCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHH
Confidence 8899999999999998664 4411 1111100 001 000 0 012368999999999876666543
No 124
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=47.46 E-value=42 Score=35.89 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..++.+++++|++.|+++|+-||=
T Consensus 182 tG~~~~~~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 182 CGSVFSRDHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 34578999999999999999998774
No 125
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=47.26 E-value=80 Score=31.07 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCC--CCCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 204 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAY--STSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~--~~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
+.+.|+++.+.++.+... ++||.--. ++-..+|-.|.. .| ......++++++++.+.++++|+.++
T Consensus 143 ~~e~i~~ia~~l~~l~~~--~~~llpyh--~~g~~Ky~~lg~-~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 143 SRENMQQALDVLIPLGIK--QIHLLPFH--QYGEPKYRLLGK-TWSMKEVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred CHHHHHHHHHHHHHcCCc--eEEEecCC--ccchhHHHHcCC-cCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 578899999999987554 55553211 122222222221 11 12234689999999999999999986
No 126
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=46.73 E-value=85 Score=32.86 Aligned_cols=78 Identities=23% Similarity=0.398 Sum_probs=46.9
Q ss_pred EecCCCCccccceecCCCCC--CChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHH
Q 008945 183 INDQPRFSFRGLLIDTSRHY--QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAA 260 (548)
Q Consensus 183 I~D~P~f~~RG~mlD~aR~f--~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~ 260 (548)
|.+.|-+-.=|-+ || +|.+...+.++.|...++|++..++ -|.+- |...|.|.-.+ ..|++
T Consensus 4 ~~g~~~~~~~Ge~-----hy~r~p~~~W~~~l~k~ka~G~n~v~~yv----~W~~h-----e~~~g~~df~g---~~dl~ 66 (319)
T PF01301_consen 4 IDGKPFFILSGEF-----HYFRIPPEYWRDRLQKMKAAGLNTVSTYV----PWNLH-----EPEEGQFDFTG---NRDLD 66 (319)
T ss_dssp ETTEEE-EEEEEE------GGGS-GGGHHHHHHHHHHTT-SEEEEE------HHHH-----SSBTTB---SG---GG-HH
T ss_pred ECCEEEEEEEeee-----ccccCChhHHHHHHHHHHhCCcceEEEec----ccccc-----CCCCCcccccc---hhhHH
Confidence 4444444444443 33 4588899999999999999999986 24432 11233332221 37999
Q ss_pred HHHHHHHHcCCEEEEcc
Q 008945 261 EIVSYAQKRGINVLAEL 277 (548)
Q Consensus 261 elv~yA~~rgI~VIPEI 277 (548)
.+++.|+++|+-||--+
T Consensus 67 ~f~~~a~~~gl~vilrp 83 (319)
T PF01301_consen 67 RFLDLAQENGLYVILRP 83 (319)
T ss_dssp HHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHcCcEEEecc
Confidence 99999999999988654
No 127
>PRK06108 aspartate aminotransferase; Provisional
Probab=46.40 E-value=52 Score=34.55 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 251 SERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 251 ~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+..+|.+++++|++.|+++|+-||-
T Consensus 172 G~~~~~~~~~~l~~~~~~~~~~li~ 196 (382)
T PRK06108 172 GWTASRDDLRAILAHCRRHGLWIVA 196 (382)
T ss_pred CcccCHHHHHHHHHHHHHCCcEEEE
Confidence 4568999999999999999998773
No 128
>PRK09275 aspartate aminotransferase; Provisional
Probab=45.79 E-value=59 Score=36.58 Aligned_cols=26 Identities=8% Similarity=0.187 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHHHHHHc--CCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKR--GINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~r--gI~VIP 275 (548)
.+..||++++++|++.|+++ ++-||-
T Consensus 254 TG~v~s~e~l~~I~~ia~~~~~~l~II~ 281 (527)
T PRK09275 254 PSVAMSDESLEKIADIVNEKRPDLMIIT 281 (527)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 45689999999999999754 777764
No 129
>PTZ00376 aspartate aminotransferase; Provisional
Probab=45.38 E-value=1.1e+02 Score=32.60 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..||.+++++|++.|+++++-||-
T Consensus 189 TG~~~s~~~~~~l~~~a~~~~~~ii~ 214 (404)
T PTZ00376 189 TGVDPTEEQWKEIADVMKRKNLIPFF 214 (404)
T ss_pred CCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 35679999999999999999997763
No 130
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=44.94 E-value=54 Score=32.15 Aligned_cols=81 Identities=16% Similarity=0.157 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEeeCCCccc---eecCCCCCCCcCCCCCCCCCCHHHH-----------------HHHH
Q 008945 204 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFP---LEIPSYPKLWDGAYSTSERYTMADA-----------------AEIV 263 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr---le~~~~P~L~~Ga~~~~~~YT~~di-----------------~elv 263 (548)
+.+...++.+.|...++..+-+-++...... --.+.||++..|+ +..+|.+|. .+++
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGA---GTVl~~~~a~~a~~aGA~FivsP~~~~~v~ 94 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGA---GTVLNPEQLRQAVDAGAQFIVSPGLTPELA 94 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEE---EeCCCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 7899999999999999999999887665432 2235688876443 223333333 4788
Q ss_pred HHHHHcCCEEEEccCCCchhhHHH
Q 008945 264 SYAQKRGINVLAELDVPGHALSWG 287 (548)
Q Consensus 264 ~yA~~rgI~VIPEID~PGH~~a~~ 287 (548)
++|+++||-++|-+=+|.......
T Consensus 95 ~~~~~~~i~~iPG~~TptEi~~A~ 118 (204)
T TIGR01182 95 KHAQDHGIPIIPGVATPSEIMLAL 118 (204)
T ss_pred HHHHHcCCcEECCCCCHHHHHHHH
Confidence 999999999999999999887654
No 131
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=44.85 E-value=38 Score=34.34 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEe
Q 008945 253 RYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHL 332 (548)
Q Consensus 253 ~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHi 332 (548)
.++++++++|+++|+++|++++-|+..--+..-.++.-+.+- -+|-.|=.++++--+...++++..|...+-|
T Consensus 139 ~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iI-------GINnRdL~tf~vdl~~t~~la~~~p~~~~~I 211 (254)
T COG0134 139 ALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKII-------GINNRDLTTLEVDLETTEKLAPLIPKDVILI 211 (254)
T ss_pred hcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEE-------EEeCCCcchheecHHHHHHHHhhCCCCcEEE
Confidence 478999999999999999999999966666655554333331 1233444455555566778888888765555
Q ss_pred c
Q 008945 333 G 333 (548)
Q Consensus 333 G 333 (548)
.
T Consensus 212 s 212 (254)
T COG0134 212 S 212 (254)
T ss_pred e
Confidence 4
No 132
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=43.37 E-value=1.8e+02 Score=30.59 Aligned_cols=111 Identities=9% Similarity=0.031 Sum_probs=67.8
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 008945 201 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVP 280 (548)
Q Consensus 201 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~P 280 (548)
.|.+-++++++++.+...++..=.+++-++ |- ..+-.++ + ....|. |.+.+++.-+++|++|++-++ |
T Consensus 19 ~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~--~~---~~~~~f~---~-d~~~FP--dp~~mi~~L~~~G~k~~~~~~-P 86 (339)
T cd06603 19 NYKDQEDVKEVDAGFDEHDIPYDVIWLDIE--HT---DGKRYFT---W-DKKKFP--DPEKMQEKLASKGRKLVTIVD-P 86 (339)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEEEEChH--Hh---CCCCceE---e-CcccCC--CHHHHHHHHHHCCCEEEEEec-C
Confidence 567899999999999999998666666322 10 0111111 0 111232 668899999999999999876 3
Q ss_pred chhh-----HHHhhC-CCC-C--CCC---------CCCCCCCCCChHHHHHHHHHHHHHhh
Q 008945 281 GHAL-----SWGKGY-PSL-W--PSK---------DCQEPLDVSNEFTFKVIDGILSDFSK 323 (548)
Q Consensus 281 GH~~-----a~~~~~-p~l-~--~~~---------~~~~~ld~~~~~t~~~l~~v~~E~~~ 323 (548)
+-.. ....+. -.+ . +++ .....+|.+||++.+...+.++++..
T Consensus 87 ~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06603 87 HIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKY 147 (339)
T ss_pred ceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhh
Confidence 3211 010000 001 0 000 01236899999999999999998864
No 133
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=43.23 E-value=48 Score=33.54 Aligned_cols=79 Identities=14% Similarity=0.373 Sum_probs=51.5
Q ss_pred CCCccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCC-CCCCCCHHHHHHHHHH
Q 008945 187 PRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYS-TSERYTMADAAEIVSY 265 (548)
Q Consensus 187 P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~-~~~~YT~~di~elv~y 265 (548)
|++.+ |++.--- .+.+-+.++++++.+..+++..=++++.++ |-- .+-... +. ....| .+.+++++.
T Consensus 7 P~wa~-G~~~~~~-~~~~~~~v~~~~~~~~~~~iP~d~~~lD~~--~~~---~~~~f~---~~~d~~~F--pdp~~~i~~ 74 (265)
T cd06589 7 PKWAF-GYWLSRY-GYGDQDKVLEVIDGMRENDIPLDGFVLDDD--YTD---GYGDFT---FDWDAGKF--PNPKSMIDE 74 (265)
T ss_pred cHHHH-HHHHhcC-CCCCHHHHHHHHHHHHHcCCCccEEEECcc--ccc---CCceee---eecChhhC--CCHHHHHHH
Confidence 55554 6664322 367899999999999999999777777544 211 111110 00 01122 257899999
Q ss_pred HHHcCCEEEEcc
Q 008945 266 AQKRGINVLAEL 277 (548)
Q Consensus 266 A~~rgI~VIPEI 277 (548)
.+++|++|++-|
T Consensus 75 l~~~g~~~~~~~ 86 (265)
T cd06589 75 LHDNGVKLVLWI 86 (265)
T ss_pred HHHCCCEEEEEe
Confidence 999999999877
No 134
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=42.91 E-value=1e+02 Score=33.83 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=64.5
Q ss_pred eEEEeeCCCCCeEEEEEecCchhhHHHHHHHHHHHhhccCCCeEEeeccceEEecCCCCccccceecCCCCCCChHHHHH
Q 008945 131 YKLLVPSPDKPTYAHLEAQTVYGALHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRGLLIDTSRHYQPLPIIKN 210 (548)
Q Consensus 131 Y~L~i~~~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~~RG~mlD~aR~f~~~~~lk~ 210 (548)
+-+.++++. |.|++ |+..|+.-+.+++...++ ..+.+.|.| ..
T Consensus 149 ~g~~~~~~~----IiiT~----G~q~al~l~~~~l~~pGd----------~v~vE~PtY-------------------~~ 191 (459)
T COG1167 149 RGISCEPEQ----IVITS----GAQQALDLLLRLLLDPGD----------TVLVEDPTY-------------------PG 191 (459)
T ss_pred cCCccCcCe----EEEeC----CHHHHHHHHHHHhCCCCC----------EEEEcCCCc-------------------HH
Confidence 345555654 88887 455555555665553211 135566776 23
Q ss_pred HHHHHHHcCCcEEEEEeeCCCccceecC-----C-CCCCC----cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 008945 211 VIDSMAYAKLNVLHWHIVDTQSFPLEIP-----S-YPKLW----DGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVP 280 (548)
Q Consensus 211 ~Id~ma~~KlN~lh~HltDdq~frle~~-----~-~P~L~----~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~P 280 (548)
.+..+..++++++-+.+ |++|..++.= . -|++. ...+..+..||.+.-++|++.|+++++-|| |=|.-
T Consensus 192 ~~~~~~~~g~~~~~vp~-d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~II-EDD~y 269 (459)
T COG1167 192 ALQALEALGARVIPVPV-DEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLII-EDDYY 269 (459)
T ss_pred HHHHHHHcCCcEEecCC-CCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEE-eeCcc
Confidence 44455566666666554 4455544320 0 02211 112234567999999999999999999888 43444
Q ss_pred c
Q 008945 281 G 281 (548)
Q Consensus 281 G 281 (548)
|
T Consensus 270 ~ 270 (459)
T COG1167 270 G 270 (459)
T ss_pred h
Confidence 3
No 135
>PRK06207 aspartate aminotransferase; Provisional
Probab=42.20 E-value=74 Score=34.09 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..+|.+++++|++.|+++++-||-
T Consensus 191 TG~~~s~e~l~~l~~~a~~~~~~iI~ 216 (405)
T PRK06207 191 AGVVYSAEEIAQIAALARRYGATVIV 216 (405)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 45679999999999999999998774
No 136
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.01 E-value=54 Score=32.07 Aligned_cols=81 Identities=10% Similarity=0.121 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEeeCCCccce---ecCCCCCCCcCCCCCCCCCCHHHH-----------------HHHH
Q 008945 204 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPL---EIPSYPKLWDGAYSTSERYTMADA-----------------AEIV 263 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~frl---e~~~~P~L~~Ga~~~~~~YT~~di-----------------~elv 263 (548)
+.+...++++.|..-++..+-+-++..+.... -.+.||++..|+ +..+|.+|. .+++
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGA---GTVl~~e~a~~ai~aGA~FivSP~~~~~vi 90 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGA---GTILNAKQFEDAAKAGSRFIVSPGTTQELL 90 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEee---EeCcCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 78999999999999999999999987665442 124688876554 334555554 4688
Q ss_pred HHHHHcCCEEEEccCCCchhhHHH
Q 008945 264 SYAQKRGINVLAELDVPGHALSWG 287 (548)
Q Consensus 264 ~yA~~rgI~VIPEID~PGH~~a~~ 287 (548)
++|+++||-+||-.=||.-.....
T Consensus 91 ~~a~~~~i~~iPG~~TptEi~~A~ 114 (201)
T PRK06015 91 AAANDSDVPLLPGAATPSEVMALR 114 (201)
T ss_pred HHHHHcCCCEeCCCCCHHHHHHHH
Confidence 999999999999999998776543
No 137
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=40.67 E-value=1.2e+02 Score=30.83 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=39.3
Q ss_pred HHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchh
Q 008945 211 VIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHA 283 (548)
Q Consensus 211 ~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~ 283 (548)
+|+....++.+.+|+-.++ ++.+++++++++|+++|++++-|+...-=.
T Consensus 125 qi~~a~~~GAD~VlLi~~~------------------------l~~~~l~~li~~a~~lGl~~lvevh~~~E~ 173 (260)
T PRK00278 125 QIYEARAAGADAILLIVAA------------------------LDDEQLKELLDYAHSLGLDVLVEVHDEEEL 173 (260)
T ss_pred HHHHHHHcCCCEEEEEecc------------------------CCHHHHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence 5888888888888886533 356899999999999999999998665433
No 138
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=40.62 E-value=4.4e+02 Score=27.37 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=46.2
Q ss_pred cceecCCCCCCCc---CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChH
Q 008945 233 FPLEIPSYPKLWD---GAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEF 309 (548)
Q Consensus 233 frle~~~~P~L~~---Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~ 309 (548)
||+-++-+|--+. +.| ......+++++++-+++++.||+++- |...+ -.|+-.+|+
T Consensus 65 ~R~sS~l~P~~~h~~~~~w-~~~~~~~~~~~~~g~~~~~~~irls~------Hp~y~--------------inL~S~~~e 123 (303)
T PRK02308 65 FRLSSSLIPLATHPELEGW-DYIEPFKEELREIGEFIKEHNIRLSF------HPDQF--------------VVLNSPKPE 123 (303)
T ss_pred EEcccCcCCCCCChhhccc-CCCCCCHHHHHHHHHHHHHcCCCeec------cChhh--------------hcCCCCCHH
Confidence 4555554554431 112 22346799999999999999997652 32211 123444677
Q ss_pred HHHH-HHHHHHHHh--hhccC-----ceeEecC
Q 008945 310 TFKV-IDGILSDFS--KVFKY-----KFVHLGG 334 (548)
Q Consensus 310 t~~~-l~~v~~E~~--~lF~~-----~~iHiGg 334 (548)
+.+. ++.+..++. +.... =.||.||
T Consensus 124 v~e~Si~~L~~~~~~~~~lG~~~~~~vViHpG~ 156 (303)
T PRK02308 124 VVENSIKDLEYHAKLLDLMGIDDSSKINIHVGG 156 (303)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCc
Confidence 7665 444444442 22222 3589999
No 139
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=40.53 E-value=1e+02 Score=27.09 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=60.3
Q ss_pred EEEEecCchhhHHHHHHHHHHHhhccCCCeEEeeccceEEecCCCCcccc---ceecCCCCCCChHHHHHHHHHHHHcCC
Q 008945 144 AHLEAQTVYGALHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRG---LLIDTSRHYQPLPIIKNVIDSMAYAKL 220 (548)
Q Consensus 144 i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~~RG---~mlD~aR~f~~~~~lk~~Id~ma~~Kl 220 (548)
|-|-|.+..---+|-+.+.+|...+. .-+.+....-+|...+.|+-=. --+|++=-+.|.+.+-.+++.+...+.
T Consensus 3 iAVvGaS~~~~~~g~~v~~~l~~~G~--~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~ 80 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRNLKAAGY--EVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGV 80 (116)
T ss_dssp EEEET--SSTTSHHHHHHHHHHHTT---EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-
T ss_pred EEEEcccCCCCChHHHHHHHHHhCCC--EEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCC
Confidence 45555554544467777777777331 1111211113566655554332 467888888999999999999999999
Q ss_pred cEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 221 NVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 221 N~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
..+.++.. ++-.+++++|++.||+|+
T Consensus 81 ~~v~~~~g----------------------------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 81 KAVWLQPG----------------------------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp SEEEE-TT----------------------------S--HHHHHHHHHTT-EEE
T ss_pred CEEEEEcc----------------------------hHHHHHHHHHHHcCCEEE
Confidence 98888742 355789999999999999
No 140
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.43 E-value=66 Score=31.72 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=60.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEeeCCCccce---ecCCCCCCCcCCCCCCCCCCHHHH-----------------HHH
Q 008945 203 QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPL---EIPSYPKLWDGAYSTSERYTMADA-----------------AEI 262 (548)
Q Consensus 203 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frl---e~~~~P~L~~Ga~~~~~~YT~~di-----------------~el 262 (548)
.+.+...++++.+...++..+-+-++..++.+. -.+.||++..|+ +...|.+|. .++
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGA---GTVl~~~~a~~a~~aGA~FivsP~~~~~v 100 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGA---GTVLNPEQLAQAIEAGAQFIVSPGLTPPL 100 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEE---eeccCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 367889999999999999999999888765543 124688876443 122333332 278
Q ss_pred HHHHHHcCCEEEEccCCCchhhHH
Q 008945 263 VSYAQKRGINVLAELDVPGHALSW 286 (548)
Q Consensus 263 v~yA~~rgI~VIPEID~PGH~~a~ 286 (548)
+++|++++|.+||.+-+|.-...+
T Consensus 101 i~~a~~~~i~~iPG~~TptEi~~a 124 (212)
T PRK05718 101 LKAAQEGPIPLIPGVSTPSELMLG 124 (212)
T ss_pred HHHHHHcCCCEeCCCCCHHHHHHH
Confidence 999999999999999999866543
No 141
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=40.37 E-value=77 Score=34.52 Aligned_cols=73 Identities=25% Similarity=0.309 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEeeCCC---ccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCc
Q 008945 205 LPIIKNVIDSMAYAKLNVLHWHIVDTQ---SFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPG 281 (548)
Q Consensus 205 ~~~lk~~Id~ma~~KlN~lh~HltDdq---~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PG 281 (548)
+.-|.+-+|.+..++.+.+++=..-.. --++.+..|-++ ...+=|.+|++++++-|.+|||.||..+ +.-
T Consensus 28 l~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~i------d~~~Gt~~d~~~li~~~H~~gi~vi~D~-V~N 100 (505)
T COG0366 28 LKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKV------DPHFGTEEDFKELVEEAHKRGIKVILDL-VFN 100 (505)
T ss_pred HHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhc------CcccCCHHHHHHHHHHHHHCCCEEEEEe-ccC
Confidence 455668899999999999998422110 000111111111 1123389999999999999999999987 466
Q ss_pred hhh
Q 008945 282 HAL 284 (548)
Q Consensus 282 H~~ 284 (548)
|++
T Consensus 101 H~s 103 (505)
T COG0366 101 HTS 103 (505)
T ss_pred cCC
Confidence 665
No 142
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=40.23 E-value=1.7e+02 Score=30.08 Aligned_cols=115 Identities=17% Similarity=0.252 Sum_probs=58.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEeeCC-CccceecCCCCCCC-cCC------C-CCCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 204 PLPIIKNVIDSMAYAKLNVLHWHIVDT-QSFPLEIPSYPKLW-DGA------Y-STSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh~HltDd-q~frle~~~~P~L~-~Ga------~-~~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
..+..+.+++..+..++|+++..+.-. .+..-. ..+|... .+. + +.+..| -+.+..+|++|.++||.+-
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~-n~~~~~~~~~~~~~~~d~~~~N~~Y-F~~~d~~i~~a~~~Gi~~~ 105 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTP-NRYGFAPFPDEDPGQFDFTRPNPAY-FDHLDRRIEKANELGIEAA 105 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B-----TTS-BS-SSTT------TT----H-HHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCccccccc-ccCCCcCCCCCCccccCCCCCCHHH-HHHHHHHHHHHHHCCCeEE
Confidence 458889999999999999999987533 122111 1233322 000 0 011111 2568999999999999874
Q ss_pred EccCCCchh-----hHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEecCCC
Q 008945 275 AELDVPGHA-----LSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDE 336 (548)
Q Consensus 275 PEID~PGH~-----~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHiGgDE 336 (548)
- +|-|- ..|..+ +. ..+.+....+++=|+.-+.+ ||...+-+|||.
T Consensus 106 l---v~~wg~~~~~~~Wg~~-~~-----------~m~~e~~~~Y~~yv~~Ry~~-~~NviW~l~gd~ 156 (289)
T PF13204_consen 106 L---VPFWGCPYVPGTWGFG-PN-----------IMPPENAERYGRYVVARYGA-YPNVIWILGGDY 156 (289)
T ss_dssp E---ESS-HHHHH--------TT-----------SS-HHHHHHHHHHHHHHHTT--SSEEEEEESSS
T ss_pred E---EEEECCcccccccccc-cc-----------CCCHHHHHHHHHHHHHHHhc-CCCCEEEecCcc
Confidence 1 23341 123222 11 12334455566666655554 677788999998
No 143
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=39.72 E-value=68 Score=31.76 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=57.3
Q ss_pred ceEEecCCC----CccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCC
Q 008945 180 PWIINDQPR----FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYT 255 (548)
Q Consensus 180 ~~~I~D~P~----f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT 255 (548)
|+++.+--. |..=|+++|+...- +.+-+.++++....+..+.+-.-.. -..++|
T Consensus 119 ~Le~~~~~dl~~L~Ka~gik~e~~~~~-~~eki~~~lki~~~l~~kki~ifvN---------------------l~~YLt 176 (216)
T TIGR01866 119 DLKYDEELDILEIIKALGIKFETQSDT-LLEKCLEILQIFKELTKKKLFIFIN---------------------SGAFLT 176 (216)
T ss_pred CeeecCccCHHHHHHhcCeeeeeccCc-HHHHHHHHHHHHHHHhcCcEEEEEc---------------------HHHhCC
Confidence 345554333 56779999999886 8899999999888887776655321 246799
Q ss_pred HHHHHHHHHHHHHcCCEEEE
Q 008945 256 MADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 256 ~~di~elv~yA~~rgI~VIP 275 (548)
++|+.+|.+|+....+.|+-
T Consensus 177 ~eei~el~~~i~~~~~~vll 196 (216)
T TIGR01866 177 KDELAELQKFISYTKLTVLF 196 (216)
T ss_pred HHHHHHHHHHHHHhcccEEE
Confidence 99999999999999999874
No 144
>PRK01060 endonuclease IV; Provisional
Probab=39.44 E-value=1.1e+02 Score=30.77 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=44.8
Q ss_pred cceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 008945 193 GLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGIN 272 (548)
Q Consensus 193 G~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~ 272 (548)
|+|..+.+. +.+.|+.++..++..+.+-+.....| ....+|.++++++-+.++++||+
T Consensus 5 g~~~~~~~~------~~~~l~~~~~~G~d~vEl~~~~p~~~----------------~~~~~~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 5 GAHVSAAGG------LEGAVAEAAEIGANAFMIFTGNPQQW----------------KRKPLEELNIEAFKAACEKYGIS 62 (281)
T ss_pred EEeeecCCC------HHHHHHHHHHcCCCEEEEECCCCCCC----------------cCCCCCHHHHHHHHHHHHHcCCC
Confidence 555555444 78999999999999999976432222 12347999999999999999999
Q ss_pred E
Q 008945 273 V 273 (548)
Q Consensus 273 V 273 (548)
+
T Consensus 63 ~ 63 (281)
T PRK01060 63 P 63 (281)
T ss_pred C
Confidence 4
No 145
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=39.44 E-value=96 Score=34.86 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.2
Q ss_pred CCCCCCHHHHHHHHHHHHHc--CCEEE
Q 008945 250 TSERYTMADAAEIVSYAQKR--GINVL 274 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~r--gI~VI 274 (548)
.+..||.+++++|++.|+++ ++-||
T Consensus 253 TG~vls~e~l~~I~~ia~~~~~~l~II 279 (521)
T TIGR03801 253 PSVAMSDESIEKIVDIVANDRPDLMIL 279 (521)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEE
Confidence 45689999999999999986 77665
No 146
>PRK07568 aspartate aminotransferase; Provisional
Probab=39.28 E-value=99 Score=32.66 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 251 SERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 251 ~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+..+|.+++++|++.|+++++-||-
T Consensus 176 G~~~~~~~~~~i~~~~~~~~~~ii~ 200 (397)
T PRK07568 176 GVVYTKEELEMLAEIAKKHDLFLIS 200 (397)
T ss_pred CccCCHHHHHHHHHHHHHCCcEEEE
Confidence 4578999999999999999998773
No 147
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=39.16 E-value=1.5e+02 Score=34.57 Aligned_cols=111 Identities=18% Similarity=0.228 Sum_probs=67.4
Q ss_pred HHHHHHcCCcEEEEEeeCCCccceecCCCCCCC-------------cCCCCCCC--CCCHHHHHHHHHHHHHcCCEEEEc
Q 008945 212 IDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-------------DGAYSTSE--RYTMADAAEIVSYAQKRGINVLAE 276 (548)
Q Consensus 212 Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~-------------~Ga~~~~~--~YT~~di~elv~yA~~rgI~VIPE 276 (548)
|+.+..+++|.+|+=..-+.-.--+.+ -+.+. .|.|+.+. .=...|+|++|+-..++||+||-.
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~-~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLD-KSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHhCCceEEEecceEEecccccc-ccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 999999999999884321100000000 11121 13333222 112459999999999999999999
Q ss_pred cCCCchhhH---------HHhhCCCC----CC------CCCCCCCCCCCChHHHHHHHHHHHHHhhh
Q 008945 277 LDVPGHALS---------WGKGYPSL----WP------SKDCQEPLDVSNEFTFKVIDGILSDFSKV 324 (548)
Q Consensus 277 ID~PGH~~a---------~~~~~p~l----~~------~~~~~~~ld~~~~~t~~~l~~v~~E~~~l 324 (548)
+ +.-|+.. +..-.|.. .+ ...|.+.|+.++|-+.+++-+-++=..+-
T Consensus 285 V-VfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e 350 (697)
T COG1523 285 V-VFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEE 350 (697)
T ss_pred E-eccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHHHHHHHH
Confidence 8 8889852 11111211 11 12467799999999999888877665543
No 148
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=39.00 E-value=1.7e+02 Score=30.91 Aligned_cols=104 Identities=24% Similarity=0.308 Sum_probs=76.7
Q ss_pred CCCCeEEEEEecCchhhHHHHHHHHHHHhhccCCCeEEeeccceEEecCCCCccccceecCCCCCCChHHHHHHHHHHHH
Q 008945 138 PDKPTYAHLEAQTVYGALHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAY 217 (548)
Q Consensus 138 ~~~~~~i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~ 217 (548)
+++.+.++|-|...-+.+.=+.-|.|-+..-.. ..+ +++ .-+|.||| +++++.++.
T Consensus 157 KgkglEaHlDGqGEP~lYP~l~~lVqalk~~~~---v~v----VSm------QTng~~L~-----------~~lv~eLee 212 (414)
T COG2100 157 KGKGLEAHLDGQGEPLLYPHLVDLVQALKEHKG---VEV----VSM------QTNGVLLS-----------KKLVDELEE 212 (414)
T ss_pred hCCCeEEEecCCCCCccchhHHHHHHHHhcCCC---ceE----EEE------eeCceecc-----------HHHHHHHHH
Confidence 455678999999999999999999998875421 111 233 34888886 789999999
Q ss_pred cCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 218 AKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 218 ~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+++..+-+-+.- --|++++ ...+..-|.-+-+.++++|+.+-||+|+-
T Consensus 213 AGLdRiNlSv~a---------LDpk~Ak-~L~G~~dYdv~kvle~aE~i~~a~idvlI 260 (414)
T COG2100 213 AGLDRINLSVDA---------LDPKLAK-MLAGRKDYDVKKVLEVAEYIANAGIDVLI 260 (414)
T ss_pred hCCceEEeeccc---------CCHHHHH-HhcCccccCHHHHHHHHHHHHhCCCCEEE
Confidence 999988775521 1355542 11234579999999999999999999763
No 149
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=38.69 E-value=43 Score=33.85 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEe
Q 008945 253 RYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHL 332 (548)
Q Consensus 253 ~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHi 332 (548)
.++.+++++++++|...|++++-|+-...-.......-+++- .+|-.|-.|+++--+...++...+|...+-|
T Consensus 134 ~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~ii-------GINnRdL~t~~vd~~~~~~L~~~ip~~~~~I 206 (247)
T PRK13957 134 ILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEII-------GINTRDLDTFQIHQNLVEEVAAFLPPNIVKV 206 (247)
T ss_pred hCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEE-------EEeCCCCccceECHHHHHHHHhhCCCCcEEE
Confidence 468899999999999999999999966666555555444431 1233334444444445566777777544433
No 150
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=38.58 E-value=62 Score=34.52 Aligned_cols=54 Identities=19% Similarity=0.256 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEE--EEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEcc
Q 008945 204 PLPIIKNVIDSMAYAKLNVLH--WHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 277 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh--~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEI 277 (548)
+.+..+++|+.|+.+++..+- +|+.++ . ..-..+++++|+++|+++|++||..|
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~-------------~-------~~~~~~~~~~l~~~a~~~~~~v~~Di 67 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPED-------------D-------PEDYLERLKELLKLAKELGMEVIADI 67 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE-----------------------------HHHHHHHHHHHHHHCT-EEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCC-------------C-------HHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 688999999999999998553 444221 0 01247899999999999999999998
No 151
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=37.89 E-value=3e+02 Score=28.86 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=70.3
Q ss_pred eEEecCCCCccccc-eecC-----CCCC-------------CChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCC
Q 008945 181 WIINDQPRFSFRGL-LIDT-----SRHY-------------QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYP 241 (548)
Q Consensus 181 ~~I~D~P~f~~RG~-mlD~-----aR~f-------------~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P 241 (548)
+.+.+.|+.+.|-+ +-|- =|.| .-.+.++++-+++|..++|-.-+-=....+..
T Consensus 13 ~~~~~~P~~~~R~lNhWDN~dgsiERGYaG~Sif~~~~~~~~~~~R~~~YARllASiGINgvvlNNVNa~~~~------- 85 (328)
T PF07488_consen 13 LDIVENPKAPLRMLNHWDNLDGSIERGYAGKSIFFWDGLPRRDLTRYRDYARLLASIGINGVVLNNVNANPKL------- 85 (328)
T ss_dssp -EEEE--SSSEEEEE--B-TTS-BTT--SSS-SSEETTEETS--HHHHHHHHHHHHTT--EEE-S-SS--CGG-------
T ss_pred CccccCCCcceeecccccCCCCceecccCcccccccCCCcccchhHHHHHHHHHhhcCCceEEecccccChhh-------
Confidence 57888888888855 2232 1222 12467888999999999999887432222211
Q ss_pred CCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 008945 242 KLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDF 321 (548)
Q Consensus 242 ~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~ 321 (548)
|+ .. -.++++.|.+-.+.+||+|--.++.-+-.. ... ..+.||.+|++.+.-++..+|+
T Consensus 86 -Lt------~~--~l~~v~~lAdvfRpYGIkv~LSvnFasP~~-----lgg-------L~TaDPld~~V~~WW~~k~~eI 144 (328)
T PF07488_consen 86 -LT------PE--YLDKVARLADVFRPYGIKVYLSVNFASPIE-----LGG-------LPTADPLDPEVRQWWKDKADEI 144 (328)
T ss_dssp -GS------TT--THHHHHHHHHHHHHTT-EEEEEE-TTHHHH-----TTS--------S---TTSHHHHHHHHHHHHHH
T ss_pred -cC------HH--HHHHHHHHHHHHhhcCCEEEEEeeccCCcc-----cCC-------cCcCCCCCHHHHHHHHHHHHHH
Confidence 11 00 246889999999999999999887654433 111 2467999999999999999999
Q ss_pred hhhccC
Q 008945 322 SKVFKY 327 (548)
Q Consensus 322 ~~lF~~ 327 (548)
-+.+|+
T Consensus 145 Y~~IPD 150 (328)
T PF07488_consen 145 YSAIPD 150 (328)
T ss_dssp HHH-TT
T ss_pred HHhCCC
Confidence 999885
No 152
>PRK08361 aspartate aminotransferase; Provisional
Probab=37.53 E-value=91 Score=33.03 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..++.+++++|++.|++++|-||-
T Consensus 179 tG~~~~~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK08361 179 TGATLDKEVAKAIADIAEDYNIYILS 204 (391)
T ss_pred CCcCcCHHHHHHHHHHHHHcCeEEEE
Confidence 34578999999999999999997763
No 153
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=37.39 E-value=40 Score=35.17 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..|+.+++++|++.|+++|+-||=
T Consensus 149 tG~~~~~~~~~~l~~~a~~~~~~ii~ 174 (350)
T TIGR03537 149 TGATAPRSYLKETIAMCREHGIILCS 174 (350)
T ss_pred cCcccCHHHHHHHHHHHHHcCcEEEE
Confidence 35679999999999999999997663
No 154
>PRK07550 hypothetical protein; Provisional
Probab=37.30 E-value=64 Score=34.12 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 251 SERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 251 ~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+..++.+++++|++.|+++|+-||=
T Consensus 177 G~~~~~~~~~~i~~~~~~~~~~iI~ 201 (386)
T PRK07550 177 GVVYPPELLHELYDLARRHGIALIL 201 (386)
T ss_pred CcccCHHHHHHHHHHHHHcCeEEEE
Confidence 4568999999999999999998763
No 155
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=37.29 E-value=48 Score=36.52 Aligned_cols=26 Identities=12% Similarity=0.275 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..|+.+++++|++.|+++++-||=
T Consensus 204 TG~~~s~e~l~~ll~~a~~~~~~iI~ 229 (468)
T PLN02450 204 LGTTTTRTELNLLVDFITAKNIHLIS 229 (468)
T ss_pred CCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 35679999999999999999998774
No 156
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=36.92 E-value=6.4e+02 Score=29.96 Aligned_cols=143 Identities=17% Similarity=0.181 Sum_probs=84.0
Q ss_pred ecCCCCccccceecCCCCCCChHHHHHHHHHHH----HcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHH
Q 008945 184 NDQPRFSFRGLLIDTSRHYQPLPIIKNVIDSMA----YAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADA 259 (548)
Q Consensus 184 ~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma----~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di 259 (548)
++.|...+||+=+...+-| .+.++..|+.+. ..+.+-+++- +|.++ |.+|+
T Consensus 590 E~NP~LG~RGir~~l~~~~--~~lf~~qlraI~ral~d~G~~~~~Im-------------~PmV~----------s~eE~ 644 (782)
T TIGR01418 590 EENPMLGWRGASRYYSESY--EEAFRLECRAIKRVREEMGLTNVEVM-------------IPFVR----------TPEEG 644 (782)
T ss_pred CCCcccccchhhhhccccc--HHHHHHHHHHHHHHHHhcCCCCeEEE-------------ecCCC----------CHHHH
Confidence 5679999999955444321 234444444332 3454444443 45554 89999
Q ss_pred HHHHHHHHHcC-------CEEEEccCCCchhhHHHh--hCCCC---CCCCC-------------CCCCCCCCChHHHHHH
Q 008945 260 AEIVSYAQKRG-------INVLAELDVPGHALSWGK--GYPSL---WPSKD-------------CQEPLDVSNEFTFKVI 314 (548)
Q Consensus 260 ~elv~yA~~rg-------I~VIPEID~PGH~~a~~~--~~p~l---~~~~~-------------~~~~ld~~~~~t~~~l 314 (548)
+++++.++..| +.|+.-|++|.=+..+-. .+=++ .+++. .....++.+|+..+.+
T Consensus 645 ~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i 724 (782)
T TIGR01418 645 KRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGFSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLI 724 (782)
T ss_pred HHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEEEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHH
Confidence 99999998754 568888999987664321 22222 12110 1235788899999999
Q ss_pred HHHHHHHhhhccCceeEecCCCCCCCCCCCCHHHHHHHHHCCCC
Q 008945 315 DGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMN 358 (548)
Q Consensus 315 ~~v~~E~~~lF~~~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~ 358 (548)
+.+++..... ...+-+-|+.. .++|....++-+.|++
T Consensus 725 ~~vi~~a~~~--g~~vgicge~~-----~~~p~~~~~l~~~G~~ 761 (782)
T TIGR01418 725 EMAIKAAKEH--GKKVGICGQAP-----SDYPEVVEFLVEEGID 761 (782)
T ss_pred HHHHHHHHhc--CCeEEEeCCCC-----CCCHHHHHHHHHcCCC
Confidence 9888877652 22233322211 1146666666677764
No 157
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=36.90 E-value=53 Score=33.14 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEcc
Q 008945 205 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 277 (548)
Q Consensus 205 ~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEI 277 (548)
++.+++.|+.++..+.+++.++-.+ .. +.+.. ........+.+++++++|+++||+|.-|-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~-----~~---~~~~~----~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGYD-----VY---YEEHD----EETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcc-----cc---cCcCC----HHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 6779999999999999999875311 10 00000 00011245789999999999999999994
No 158
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=35.34 E-value=70 Score=33.24 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEeeCCCcc-ceecC-CCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCch
Q 008945 205 LPIIKNVIDSMAYAKLNVLHWHIVDTQSF-PLEIP-SYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGH 282 (548)
Q Consensus 205 ~~~lk~~Id~ma~~KlN~lh~HltDdq~f-rle~~-~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH 282 (548)
...+-+.+...+..|||.|..-+.||-|= ++.+. .+|.-+ ++ .=.-.||.-++.-|++.||-+|--|=+.--
T Consensus 76 kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~-~s-----v~~f~Di~~~iKkaKe~giY~IARiVvFKD 149 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYT-KS-----VNKFKDIEPVIKKAKENGIYAIARIVVFKD 149 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhh-hc-----cccccccHHHHHHHHhcCeEEEEEEEEeee
Confidence 34456777888999999999999998652 11111 111111 11 112458999999999999999987744432
Q ss_pred hhHHH----------hhCCC-------CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEecCCCCCCCCCCC-
Q 008945 283 ALSWG----------KGYPS-------LWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTL- 344 (548)
Q Consensus 283 ~~a~~----------~~~p~-------l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHiGgDEv~~~~w~~- 344 (548)
+--+. .+.|- |........-.|+=++.+.+.=-.|-+|.++ .|-||+.+. +-.
T Consensus 150 ~~l~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~~--------fGfdEiQFD-YIRF 220 (400)
T COG1306 150 TILAKENPFKIAVYKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAAK--------FGFDEIQFD-YIRF 220 (400)
T ss_pred eeEEeecCceEEEEcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHHH--------cCccceeee-EEEc
Confidence 21100 00010 0000011123688899999988888888876 355555321 000
Q ss_pred ---CH---HHHHHHHHCCCChhhHHHHHHHHHHH
Q 008945 345 ---TP---HVSKWLKEHSMNESQAYQYFVLQAQK 372 (548)
Q Consensus 345 ---~p---~~~~~~~~~g~~~~~l~~~f~~~~~~ 372 (548)
.+ ....+|++.|++..+....|+.-..+
T Consensus 221 P~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE 254 (400)
T COG1306 221 PADGGGLDKALNYRNTDNMTKSEALQSFLHYARE 254 (400)
T ss_pred cCCCCchhhhhcccccccCChHHHHHHHHHHHHH
Confidence 11 22234566688877777777754433
No 159
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=34.90 E-value=3.4e+02 Score=28.62 Aligned_cols=109 Identities=10% Similarity=0.090 Sum_probs=67.0
Q ss_pred cceecCCC-CCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 008945 193 GLLIDTSR-HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGI 271 (548)
Q Consensus 193 G~mlD~aR-~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI 271 (548)
|++. +| .|.+-++++++++.+...++-.=.+++-.+ |- ..+-..+- ....| .|.+++++.-+++|+
T Consensus 12 G~~q--sr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDid--y~---~~~~~Ft~----d~~~F--Pdp~~mv~~L~~~G~ 78 (332)
T cd06601 12 GFHQ--GCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVD--FQ---DNYRTFTT----NGGGF--PNPKEMFDNLHNKGL 78 (332)
T ss_pred hhhh--CCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCc--hh---cCCCceee----cCCCC--CCHHHHHHHHHHCCC
Confidence 5555 45 466899999999999999987544554332 11 11111110 01112 346788888899999
Q ss_pred EEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 008945 272 NVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSK 323 (548)
Q Consensus 272 ~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~ 323 (548)
.+|+-++---+ +-...+. ...-.|.++|++.+.-.+.++.+.+
T Consensus 79 klv~~i~P~i~-------~g~~~~~--~~~~pDftnp~ar~wW~~~~~~l~~ 121 (332)
T cd06601 79 KCSTNITPVIS-------YGGGLGS--PGLYPDLGRPDVREWWGNQYKYLFD 121 (332)
T ss_pred eEEEEecCcee-------cCccCCC--CceeeCCCCHHHHHHHHHHHHHHHh
Confidence 99888762222 1111111 1224689999999998888877654
No 160
>PRK10426 alpha-glucosidase; Provisional
Probab=34.87 E-value=2.8e+02 Score=32.06 Aligned_cols=127 Identities=16% Similarity=0.233 Sum_probs=70.8
Q ss_pred CCCCccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCC-CCCCCCHHHHHHHHH
Q 008945 186 QPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYS-TSERYTMADAAEIVS 264 (548)
Q Consensus 186 ~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~-~~~~YT~~di~elv~ 264 (548)
-|++.++|+.+.. + -+-+.++++++.+...++-+=-+++-|-++.+.. ++..-..+.|. ....| -|.+++|+
T Consensus 204 ~P~Wal~G~~~g~--~-~~~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~--~~g~~~~~~~~~d~~~F--Pdp~~mi~ 276 (635)
T PRK10426 204 LPDWAYDGVTLGI--Q-GGTEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMT--SFGKRLMWNWKWDSERY--PQLDSRIK 276 (635)
T ss_pred CChhhccCccccc--c-CCHHHHHHHHHHHHHcCCCeeEEEEecccccccc--cccccccccceEChhhC--CCHHHHHH
Confidence 5788888988632 1 2467899999999998876444444332332221 11100000000 01112 25788999
Q ss_pred HHHHcCCEEEEccCCCchhh---HHHhhC-CCC-C--CCC---------CCCCCCCCCChHHHHHHHHHHHH
Q 008945 265 YAQKRGINVLAELDVPGHAL---SWGKGY-PSL-W--PSK---------DCQEPLDVSNEFTFKVIDGILSD 320 (548)
Q Consensus 265 yA~~rgI~VIPEID~PGH~~---a~~~~~-p~l-~--~~~---------~~~~~ld~~~~~t~~~l~~v~~E 320 (548)
.-+++||+++.-|| |+=.. ....+. -.+ . .++ .....+|.+||++.+..++.+++
T Consensus 277 ~L~~~G~k~v~~i~-P~v~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~ 347 (635)
T PRK10426 277 QLNEEGIQFLGYIN-PYLASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKK 347 (635)
T ss_pred HHHHCCCEEEEEEc-CccCCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHH
Confidence 99999999998876 32110 011000 011 0 000 11236899999999999888764
No 161
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=34.83 E-value=2.7e+02 Score=29.22 Aligned_cols=110 Identities=18% Similarity=0.350 Sum_probs=66.0
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCC-
Q 008945 201 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDV- 279 (548)
Q Consensus 201 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~- 279 (548)
.|.+-++++++++.+...++-.=.+++.++ |- ..+..++ + ....|. |.+++++..+++|+++++-++-
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~~---~~~~~f~---~-d~~~fP--dp~~m~~~l~~~g~~~~~~~~P~ 87 (339)
T cd06604 19 SYYPEEEVREIADEFRERDIPCDAIYLDID--YM---DGYRVFT---W-DKERFP--DPKELIKELHEQGFKVVTIIDPG 87 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECch--hh---CCCCcee---e-ccccCC--CHHHHHHHHHHCCCEEEEEEeCc
Confidence 566899999999999999988655555322 11 1121121 0 112232 5689999999999999876532
Q ss_pred ----Cchh---hHHHhhC----CC-------CCCCCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 008945 280 ----PGHA---LSWGKGY----PS-------LWPSKDCQEPLDVSNEFTFKVIDGILSDFSK 323 (548)
Q Consensus 280 ----PGH~---~a~~~~~----p~-------l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~ 323 (548)
++.. ++..+.| ++ .++ .....+|.+||++.++..+.++++.+
T Consensus 88 v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~--g~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06604 88 VKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWP--GLSAFPDFTNPKVREWWGSLYKKFVD 147 (339)
T ss_pred eeCCCCChHHHHHHHCCeEEECCCCCEEEEEecC--CCccccCCCChHHHHHHHHHHHHHhh
Confidence 1211 1111111 00 001 01234799999999999999988764
No 162
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=34.65 E-value=48 Score=35.23 Aligned_cols=26 Identities=12% Similarity=0.276 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..||++++++|++.|+++++-||-
T Consensus 178 tG~~~s~~~~~~l~~~a~~~~~~ii~ 203 (393)
T TIGR03538 178 TGAVLSLDTLKKLIELADQYGFIIAS 203 (393)
T ss_pred cCcccCHHHHHHHHHHHHHCCEEEEE
Confidence 35679999999999999999997773
No 163
>PRK09148 aminotransferase; Validated
Probab=34.55 E-value=64 Score=34.53 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
.+..||.+++++|++.|+++|+-||
T Consensus 178 tG~~~s~~~l~~l~~~a~~~~~~ii 202 (405)
T PRK09148 178 TAYVADLDFYKDVVAFAKKHDIIIL 202 (405)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 4567999999999999999999776
No 164
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=34.32 E-value=20 Score=37.50 Aligned_cols=91 Identities=12% Similarity=0.044 Sum_probs=47.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhccCce
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKF 329 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~ 329 (548)
...-+|-+++|.|.+-----||..+|.+ +...+ ....+.+-+-+-++-+.++..-..
T Consensus 210 h~RNltDe~iraia~~GGviGi~~~~~f---------l~~~~--------------~~~~~~~~~~~Hi~y~~~l~G~dh 266 (320)
T PF01244_consen 210 HPRNLTDEQIRAIAERGGVIGINFYPAF---------LGDDW--------------DPRASLDDLVDHIDYIVDLVGIDH 266 (320)
T ss_dssp -TTSB-HHHHHHHHHTT-EEEEESSHHH---------HSTTH--------------SSG-BHHHHHHHHHHHHHHH-GGG
T ss_pred CCCCCCHHHHHHHHHCCcEEEEEcchhh---------hcccc--------------cccccHHHHHHHHHHHHHhcCCCe
Confidence 3445899999999876655555554443 11000 122233333344555666666678
Q ss_pred eEecCCCC-------CCCCCCCCHHHHHHHHHCCCChhhHH
Q 008945 330 VHLGGDEV-------NTSCWTLTPHVSKWLKEHSMNESQAY 363 (548)
Q Consensus 330 iHiGgDEv-------~~~~w~~~p~~~~~~~~~g~~~~~l~ 363 (548)
+=||+|=- ......+-|.+.+.|.+.|++..++-
T Consensus 267 VgiGsDfdg~~~~~~gl~~~~~~~~l~~~L~~rG~s~~~i~ 307 (320)
T PF01244_consen 267 VGIGSDFDGIDGPPEGLEDPSDLPNLTEELLKRGYSEEDIE 307 (320)
T ss_dssp EEEE--BTTTSSHBBTBSSGGGHHHHHHHHHHTTS-HHHHH
T ss_pred EEECcccCCCCCCCCccCCHHHHHHHHHHHHHCCCCHHHHH
Confidence 88888821 11123455788888888998866543
No 165
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=33.69 E-value=55 Score=35.63 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=51.0
Q ss_pred ccceecCCCCC---CC---hHHHHHHHHHHH-HcCC-cEEEEEeeCCCcc-ceecCCCCCCCcCCCCCCCCCCHHHHHHH
Q 008945 192 RGLLIDTSRHY---QP---LPIIKNVIDSMA-YAKL-NVLHWHIVDTQSF-PLEIPSYPKLWDGAYSTSERYTMADAAEI 262 (548)
Q Consensus 192 RG~mlD~aR~f---~~---~~~lk~~Id~ma-~~Kl-N~lh~HltDdq~f-rle~~~~P~L~~Ga~~~~~~YT~~di~el 262 (548)
=|+.||++.-| +. .+.+.++++.+. ..++ ..-|+||.|+.+= .=-.+.+-.+ +.|..-.+-++.|
T Consensus 303 lGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~~~GS~~DRH~~I------G~G~Ig~~~f~~l 376 (413)
T PTZ00372 303 VGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKSDLGSGLDRHENI------GKGKLGMETFKFI 376 (413)
T ss_pred eEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCCccCCCcccccCc------CCCCcChHHHHHH
Confidence 38999999755 43 345556665553 2333 3667777786431 0001223333 3456778899999
Q ss_pred HHHHHHcCCEEEEcc
Q 008945 263 VSYAQKRGINVLAEL 277 (548)
Q Consensus 263 v~yA~~rgI~VIPEI 277 (548)
+...+-.+|-+|-|.
T Consensus 377 ~~~~~~~~iP~ILET 391 (413)
T PTZ00372 377 MNSKYFKNIPIILET 391 (413)
T ss_pred HhChhhCCCeEEEeC
Confidence 999999999999884
No 166
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=33.64 E-value=2.8e+02 Score=26.12 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=48.6
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEccCC
Q 008945 202 YQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERY--TMADAAEIVSYAQKRGINVLAELDV 279 (548)
Q Consensus 202 f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~Y--T~~di~elv~yA~~rgI~VIPEID~ 279 (548)
=++.+.-.+.+..|...++|+|-+--+-..++.. ||. .+ + +.+++ ..+=+..+++.|.+.||.|+.-+..
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~----yps--~~-~-~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAF----YPS--KL-S-PGGFYMPPVDLLEMILDAADKYGMKVFVGLYF 87 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeecCCccc----CCc--cc-c-CccccCCcccHHHHHHHHHHHcCCEEEEeCCC
Confidence 4678889999999999999998876554444332 221 01 0 11111 3456899999999999999987643
No 167
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=33.29 E-value=68 Score=32.97 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=23.6
Q ss_pred cceecCCCCCCCcCCCCCC-CCCCHHHHHHHHHHHHHcCCEEE
Q 008945 233 FPLEIPSYPKLWDGAYSTS-ERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 233 frle~~~~P~L~~Ga~~~~-~~YT~~di~elv~yA~~rgI~VI 274 (548)
||+-++-+|--+...+... ..+=++++++|=++|+++||++-
T Consensus 62 yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~~~iRls 104 (275)
T PF03851_consen 62 YRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKENGIRLS 104 (275)
T ss_dssp EE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHHTT-EEE
T ss_pred EecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHHcCCeEE
Confidence 5777766665441100000 01236789999999999999986
No 168
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=33.05 E-value=1.9e+02 Score=26.52 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=50.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH---h
Q 008945 246 GAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDF---S 322 (548)
Q Consensus 246 Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~---~ 322 (548)
|.+|.-..+|.+||..-|+|+-..|=.+--|.+-++|... .|-.+|.-+ .++-++++ .|+.|+ .
T Consensus 6 eTfSyLPpLTdeqI~kQI~Y~i~~GW~p~iEft~~~~~~~---~YW~MWkLP----MFg~tD~~------~Vl~Ei~~Cr 72 (138)
T CHL00130 6 GTFSFLPDLTDQQIEKQIQYAISKGWALNVEWTDDPHPRN---SYWELWGLP----LFDVKDPA------AVMFEINECR 72 (138)
T ss_pred ceeccCCCCCHHHHHHHHHHHHhcCCeEEEEecCCCCcCc---cEEeeeCCc----cCCCCCHH------HHHHHHHHHH
Confidence 3334444579999999999999999999999999999752 233332111 23334433 344555 5
Q ss_pred hhccCceeEecC
Q 008945 323 KVFKYKFVHLGG 334 (548)
Q Consensus 323 ~lF~~~~iHiGg 334 (548)
..+|+.||-|=|
T Consensus 73 kayP~~yIRl~g 84 (138)
T CHL00130 73 KQKPNGYIKVNA 84 (138)
T ss_pred HHCCCcEEEEEE
Confidence 679998887744
No 169
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=33.00 E-value=50 Score=34.81 Aligned_cols=134 Identities=19% Similarity=0.231 Sum_probs=64.2
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEeeCCC-ccc-------e---ecCC-C--CCCC----cCC-CCCCCCCCH-----
Q 008945 201 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQ-SFP-------L---EIPS-Y--PKLW----DGA-YSTSERYTM----- 256 (548)
Q Consensus 201 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq-~fr-------l---e~~~-~--P~L~----~Ga-~~~~~~YT~----- 256 (548)
-|+.=+.-.+.||-||.+++|.--- ++-.| =|+ + |+.. + |... -|. ..-++.+++
T Consensus 14 a~WdW~rWEreIDWMALnGiNl~La-~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~ 92 (333)
T PF05089_consen 14 AWWDWERWEREIDWMALNGINLPLA-IVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQ 92 (333)
T ss_dssp TT--HHHHHHHHHHHHHTT--EEE---TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHH
T ss_pred cccCHHHHHHHHHHHHHhCCchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHH
Confidence 3566778899999999999995422 22111 010 0 0000 0 1000 000 012233332
Q ss_pred -HHH-HHHHHHHHHcCCE-EEEccCCCchhh-HHHhhCCCCCC-------CCCCCCCCCCCChHHHHHHHHHHHHHhhhc
Q 008945 257 -ADA-AEIVSYAQKRGIN-VLAELDVPGHAL-SWGKGYPSLWP-------SKDCQEPLDVSNEFTFKVIDGILSDFSKVF 325 (548)
Q Consensus 257 -~di-~elv~yA~~rgI~-VIPEID~PGH~~-a~~~~~p~l~~-------~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF 325 (548)
.++ |.|++.-++.||+ |.|-+ .||.= ++.+.+|+..- .-.|..-|||++|--.++-+..++|..++|
T Consensus 93 q~~Lq~kIl~RmreLGm~PVLPaF--~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P~dplF~~i~~~F~~~q~~~y 170 (333)
T PF05089_consen 93 QAELQKKILDRMRELGMTPVLPAF--AGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDPTDPLFAEIAKLFYEEQIKLY 170 (333)
T ss_dssp HHHHHHHHHHHHHHHT-EEEEE----S-EE-TTHHHHSTT--EE---EETTEE--EEE-SS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccCCCc--CCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCCCCchHHHHHHHHHHHHHHhc
Confidence 333 5789999999998 66764 78874 56667887521 112445699999998899999999999999
Q ss_pred cCceeEecCCCCC
Q 008945 326 KYKFVHLGGDEVN 338 (548)
Q Consensus 326 ~~~~iHiGgDEv~ 338 (548)
. ..=..++|=++
T Consensus 171 G-~~~~Y~~D~Fn 182 (333)
T PF05089_consen 171 G-TDHIYAADPFN 182 (333)
T ss_dssp ----SEEE--TTT
T ss_pred C-CCceeCCCccC
Confidence 7 22233556554
No 170
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.94 E-value=3.7e+02 Score=27.93 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEeeCC---------CccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 205 LPIIKNVIDSMAYAKLNVLHWHIVDT---------QSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 205 ~~~lk~~Id~ma~~KlN~lh~HltDd---------q~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
-+.++++++.+...++.+=.+|+.++ ..|.+....|| |.+++++.-+++|++|++
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FP----------------dp~~mi~~L~~~g~k~~~ 91 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFP----------------DPAAFVAKFHERGIRLAP 91 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCC----------------CHHHHHHHHHHCCCEEEE
Confidence 57899999999999988555555321 01222222222 577899999999999998
Q ss_pred ccCCCchh-------hHHHhhCCCCC-CCC----------CCCCCCCCCChHHHHHHHHHHHHHh
Q 008945 276 ELDVPGHA-------LSWGKGYPSLW-PSK----------DCQEPLDVSNEFTFKVIDGILSDFS 322 (548)
Q Consensus 276 EID~PGH~-------~a~~~~~p~l~-~~~----------~~~~~ld~~~~~t~~~l~~v~~E~~ 322 (548)
-|+ |.-. +...+.|- +. ..+ .....+|.+||++.+...+.+++..
T Consensus 92 ~i~-P~i~~~~~~y~e~~~~g~~-v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 154 (317)
T cd06599 92 NIK-PGLLQDHPRYKELKEAGAF-IKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEAL 154 (317)
T ss_pred EeC-CcccCCCHHHHHHHHCCcE-EEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHH
Confidence 663 2211 11111100 00 000 0112589999999999998886553
No 171
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=32.93 E-value=3.7e+02 Score=28.21 Aligned_cols=131 Identities=16% Similarity=0.199 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCCcEEEEEeeCCCccc-eecCCCCCCC-----cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 008945 207 IIKNVIDSMAYAKLNVLHWHIVDTQSFP-LEIPSYPKLW-----DGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVP 280 (548)
Q Consensus 207 ~lk~~Id~ma~~KlN~lh~HltDdq~fr-le~~~~P~L~-----~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~P 280 (548)
.=|++++.|..+|+=+=-=|++|.--|- ++..+.|-.. +.-+.+..-.|.++++.|++--.--||..+|.+-.|
T Consensus 150 ~Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvIgv~~~~~fl~~ 229 (313)
T COG2355 150 FGKELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGVIGVNFIPAFLRP 229 (313)
T ss_pred HHHHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCEEEEEeehhhccC
Confidence 3478888888888877777888765553 4455666654 111234455899999999999999999999998776
Q ss_pred chhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEecCCCCCCC----CCCCC---HHHHHHHH
Q 008945 281 GHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTS----CWTLT---PHVSKWLK 353 (548)
Q Consensus 281 GH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHiGgDEv~~~----~w~~~---p~~~~~~~ 353 (548)
|- .. ++ +.+=+.+=++.+.+++.-+.+=||+|=.... .++.- |.+.+.+.
T Consensus 230 ~~-----~~--------------~a----tldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~p~gled~~~l~~l~~~L~ 286 (313)
T COG2355 230 GG-----AA--------------RA----TLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGPPDGLEDVGKLPNLTAALI 286 (313)
T ss_pred CC-----CC--------------CC----CHHHHHHHHHHHHHhcCcceeEecccccCCCCCchhhcChhHHHHHHHHHH
Confidence 21 00 11 2233334456667787778888888844322 22322 34445556
Q ss_pred HCCCChh
Q 008945 354 EHSMNES 360 (548)
Q Consensus 354 ~~g~~~~ 360 (548)
++|++..
T Consensus 287 ~~G~~e~ 293 (313)
T COG2355 287 ERGYSEE 293 (313)
T ss_pred HcCCCHH
Confidence 6777654
No 172
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=32.69 E-value=5.1e+02 Score=25.76 Aligned_cols=131 Identities=9% Similarity=0.162 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhH
Q 008945 206 PIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALS 285 (548)
Q Consensus 206 ~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a 285 (548)
-.+.+.|+.++.+++..+-+.+.+.. ..+ ...-++.+++++|.+.++++||.|. .+-+++|..
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~~~~---------~~~------~~~~~~~~~~~~l~~~l~~~Gl~i~-~~~~~~~~~- 78 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVDESD---------ERL------ARLDWSKEERLSLVKAIYETGVRIP-SMCLSGHRR- 78 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCCcc---------ccc------ccccCCHHHHHHHHHHHHHcCCCce-EEecccccC-
Confidence 36789999999999999999764311 111 1123678899999999999999876 333344421
Q ss_pred HHhhCCCCCCCCCCCCCCCCCCh----HHHHHHHHHHHHHhhhccCceeEecCCCCCCCCCCCCHHHHHHHHHCCCChhh
Q 008945 286 WGKGYPSLWPSKDCQEPLDVSNE----FTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNESQ 361 (548)
Q Consensus 286 ~~~~~p~l~~~~~~~~~ld~~~~----~t~~~l~~v~~E~~~lF~~~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~ 361 (548)
+| +.-.++ ++.+.++.+++ ++..+..+++-++|-..... ...+.. .+
T Consensus 79 ----~~-----------~~~~d~~~r~~~~~~~~~~i~-~a~~lG~~~v~~~~~~~~~~--~~~~~~-----------~~ 129 (284)
T PRK13210 79 ----FP-----------FGSRDPATRERALEIMKKAIR-LAQDLGIRTIQLAGYDVYYE--EKSEET-----------RQ 129 (284)
T ss_pred ----cC-----------CCCCCHHHHHHHHHHHHHHHH-HHHHhCCCEEEECCcccccc--cccHHH-----------HH
Confidence 11 111233 34455555553 33444556666544211110 001110 13
Q ss_pred HHHHHHHHHHHHHHHcCCeEE
Q 008945 362 AYQYFVLQAQKIALLHGYEIV 382 (548)
Q Consensus 362 l~~~f~~~~~~~l~~~g~~~~ 382 (548)
.....++++.++++++|.+..
T Consensus 130 ~~~~~l~~l~~~a~~~gv~l~ 150 (284)
T PRK13210 130 RFIEGLAWAVEQAAAAQVMLA 150 (284)
T ss_pred HHHHHHHHHHHHHHHhCCEEE
Confidence 344566677778888887543
No 173
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=32.48 E-value=46 Score=35.63 Aligned_cols=28 Identities=21% Similarity=0.463 Sum_probs=25.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE-cc
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA-EL 277 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP-EI 277 (548)
.+..+|++|++.|.+.|+++||.||- ||
T Consensus 171 ~Grvwt~eeL~~i~elc~kh~v~VISDEI 199 (388)
T COG1168 171 TGRVWTKEELRKIAELCLRHGVRVISDEI 199 (388)
T ss_pred CCccccHHHHHHHHHHHHHcCCEEEeecc
Confidence 35689999999999999999999997 67
No 174
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=32.44 E-value=68 Score=35.73 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..|+.+++++|++.|+++++-||=
T Consensus 294 TG~v~~~~~l~~i~~~a~~~~~~ii~ 319 (517)
T PRK13355 294 TGALYPREVLQQIVDIAREHQLIIFS 319 (517)
T ss_pred CCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 35579999999999999999997763
No 175
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=32.36 E-value=94 Score=31.80 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=41.1
Q ss_pred CCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEccC
Q 008945 200 RHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGI-NVLAELD 278 (548)
Q Consensus 200 R~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI-~VIPEID 278 (548)
++.++.+.++++++.++..+...+. ++.. +..-..++.+++++++++|+ .| .|.
T Consensus 37 ~~~ls~eei~~~i~~~~~~gi~~I~--~tGG---------------------EPll~~~l~~iv~~l~~~g~~~v--~i~ 91 (302)
T TIGR02668 37 GNELSPEEIERIVRVASEFGVRKVK--ITGG---------------------EPLLRKDLIEIIRRIKDYGIKDV--SMT 91 (302)
T ss_pred cCcCCHHHHHHHHHHHHHcCCCEEE--EECc---------------------ccccccCHHHHHHHHHhCCCceE--EEE
Confidence 4678999999999999888776544 3432 22234578899999999988 44 344
Q ss_pred CCch
Q 008945 279 VPGH 282 (548)
Q Consensus 279 ~PGH 282 (548)
|-|.
T Consensus 92 TNG~ 95 (302)
T TIGR02668 92 TNGI 95 (302)
T ss_pred cCch
Confidence 5554
No 176
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=32.32 E-value=1.2e+02 Score=31.99 Aligned_cols=94 Identities=17% Similarity=0.283 Sum_probs=61.2
Q ss_pred EEEEecCchhhHHHHHHHHHHHhhccCCCeEEeeccceEEec-CCCCccccceecCCCCCCChHHHHHHHHHHHHcCCcE
Q 008945 144 AHLEAQTVYGALHGLQTLSQLCQFNFSSRVIEILMTPWIIND-QPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNV 222 (548)
Q Consensus 144 i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D-~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~ 222 (548)
+.|.+-...|..---.-..||-..+-+ .+. ++|.- -|+.+ |-+ .+|..|.++-+++++..++..|+++
T Consensus 190 v~vVSmQTng~~L~~~lv~eLeeAGLd----RiN---lSv~aLDpk~A-k~L---~G~~dYdv~kvle~aE~i~~a~idv 258 (414)
T COG2100 190 VEVVSMQTNGVLLSKKLVDELEEAGLD----RIN---LSVDALDPKLA-KML---AGRKDYDVKKVLEVAEYIANAGIDV 258 (414)
T ss_pred ceEEEEeeCceeccHHHHHHHHHhCCc----eEE---eecccCCHHHH-HHh---cCccccCHHHHHHHHHHHHhCCCCE
Confidence 556665666666555555566554322 121 12221 12221 222 4688999999999999999999999
Q ss_pred EEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcC
Q 008945 223 LHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRG 270 (548)
Q Consensus 223 lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rg 270 (548)
|---+ -+ |. |..+|+..||++|++.|
T Consensus 259 lIaPv--------~l---PG-----------~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 259 LIAPV--------WL---PG-----------VNDDEMPKIIEWAREIG 284 (414)
T ss_pred EEeee--------ec---CC-----------cChHHHHHHHHHHHHhC
Confidence 87532 22 22 56789999999999998
No 177
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=32.17 E-value=52 Score=29.26 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEccCCCchhh
Q 008945 255 TMADAAEIVSYAQKRGINVLAELDVPGHAL 284 (548)
Q Consensus 255 T~~di~elv~yA~~rgI~VIPEID~PGH~~ 284 (548)
|.+|+++++++|+++++.|.+- .-||..
T Consensus 9 s~~ev~~~v~~a~~~~~~v~~~--g~G~~~ 36 (139)
T PF01565_consen 9 SVEEVQAIVKFANENGVPVRVR--GGGHSW 36 (139)
T ss_dssp SHHHHHHHHHHHHHTTSEEEEE--SSSTTS
T ss_pred CHHHHHHHHHHHHHcCCcEEEE--cCCCCc
Confidence 7899999999999999999986 455543
No 178
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=32.04 E-value=2.9e+02 Score=31.43 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=67.1
Q ss_pred cc-eecCCCCC-CChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHc-
Q 008945 193 GL-LIDTSRHY-QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKR- 269 (548)
Q Consensus 193 G~-mlD~aR~f-~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~r- 269 (548)
|. ||-++|.- .+.+.+++.++.+..++++.|..= -. ++ |......|.+|++++
T Consensus 136 G~~~LGssR~k~~~~e~~~~i~~~l~~~~Id~LviI-GG---------------------d~--S~~~A~~Lae~~~~~~ 191 (555)
T PRK07085 136 GFDMIGSGRTKIETEEQKEACLETVKKLKLDGLVII-GG---------------------DD--SNTNAAILAEYFAKHG 191 (555)
T ss_pred ChhhhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEe-CC---------------------ch--HHHHHHHHHHHHHHhC
Confidence 66 89999954 467899999999999999999872 11 11 555667888998877
Q ss_pred -CCEEEEccCCCchhhHHHhhCCCCCCCCCCCC--CCCCCChHHHHHHHHHHHHH-hhhccC-ceeEe
Q 008945 270 -GINVLAELDVPGHALSWGKGYPSLWPSKDCQE--PLDVSNEFTFKVIDGILSDF-SKVFKY-KFVHL 332 (548)
Q Consensus 270 -gI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~--~ld~~~~~t~~~l~~v~~E~-~~lF~~-~~iHi 332 (548)
+|.|| =+|.=- .-+| ... ..++.-+.+.+++.++++++ .+.-.+ +++|+
T Consensus 192 ~~i~VI---GIPkTI------DNDl-----~~~~id~s~GFdTA~~~~~~~I~~i~~Da~s~~~~~~~ 245 (555)
T PRK07085 192 CKTQVI---GVPKTI------DGDL-----KNEFIETSFGFDTATKTYSEMIGNISRDALSAKKYWHF 245 (555)
T ss_pred CCccEE---EEeeee------cCCC-----CCCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 66665 122110 1112 112 35677788888998999888 333332 45553
No 179
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=31.80 E-value=2.3e+02 Score=30.97 Aligned_cols=67 Identities=16% Similarity=0.331 Sum_probs=42.7
Q ss_pred eecCCCCC-CChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 008945 195 LIDTSRHY-QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINV 273 (548)
Q Consensus 195 mlD~aR~f-~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~V 273 (548)
+++.+-+| ++++.+..-+........++=-+=++. |+-| -+..||++++..++.+|.+++|.|
T Consensus 199 ~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitN--------PsNP--------LG~~~~~e~L~~ll~Fa~~kniHv 262 (471)
T KOG0256|consen 199 HCSSSNGFQITVEALEAALNQARKLGLKVKGVLITN--------PSNP--------LGTTLSPEELISLLNFASRKNIHV 262 (471)
T ss_pred EeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeC--------CCCC--------CCCccCHHHHHHHHHHHhhcceEE
Confidence 44555444 445555555555555555544443332 2222 245799999999999999999998
Q ss_pred EE-cc
Q 008945 274 LA-EL 277 (548)
Q Consensus 274 IP-EI 277 (548)
|- ||
T Consensus 263 I~DEI 267 (471)
T KOG0256|consen 263 ISDEI 267 (471)
T ss_pred Eeehh
Confidence 76 55
No 180
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=31.61 E-value=1.7e+02 Score=31.09 Aligned_cols=82 Identities=21% Similarity=0.164 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHH-HHHHHHHHHhhhccCceeEecCCCCC
Q 008945 260 AEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFK-VIDGILSDFSKVFKYKFVHLGGDEVN 338 (548)
Q Consensus 260 ~elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~-~l~~v~~E~~~lF~~~~iHiGgDEv~ 338 (548)
.+++.+|+++||+|++-.+.|.. ...+++..+ |++++++.+.+. |-|=++
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~~~---------------------~l~~~~~R~~fi~siv~~~~~~--------gfDGId 117 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVPLE---------------------QISNPTYRTQWIQQKVELAKSQ--------FMDGIN 117 (358)
T ss_pred HHHHHHHHHcCCEEEEECccCHH---------------------HcCCHHHHHHHHHHHHHHHHHh--------CCCeEE
Confidence 48899999999999986544321 123555554 889988877653 122221
Q ss_pred CCCCCCCHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHcC
Q 008945 339 TSCWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHG 378 (548)
Q Consensus 339 ~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~l~~~g 378 (548)
. .|+. |.. .+-...+.+..|++++.+.+++.|
T Consensus 118 I-DwE~-p~~------~~~~d~~~~t~llkelr~~l~~~~ 149 (358)
T cd02875 118 I-DIEQ-PIT------KGSPEYYALTELVKETTKAFKKEN 149 (358)
T ss_pred E-cccC-CCC------CCcchHHHHHHHHHHHHHHHhhcC
Confidence 1 1221 110 011123677889999988887764
No 181
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=31.47 E-value=2.1e+02 Score=23.79 Aligned_cols=44 Identities=7% Similarity=0.063 Sum_probs=29.4
Q ss_pred ceEEEEccCCccccCCCCCCeEEEeeCCCCCeEEEEEecCchhhHHHHHHHH
Q 008945 111 GLNVFISSTKDELQYGIDESYKLLVPSPDKPTYAHLEAQTVYGALHGLQTLS 162 (548)
Q Consensus 111 ~~~i~v~~~~~~l~~~~~E~Y~L~i~~~~~~~~i~I~a~~~~G~~~gl~Tl~ 162 (548)
.+.+.+..... ..+.|+|+-+.++ .|.|+|++..-+.+|+..-+
T Consensus 19 ~f~~~~~~~~~-----~~d~F~l~~~~~g---ki~I~G~s~vala~Gl~~YL 62 (86)
T PF12971_consen 19 QFTFELIPSSN-----GKDVFELSSADNG---KIVIRGNSGVALASGLNWYL 62 (86)
T ss_dssp GEEEEE---BT-----TBEEEEEEE-SSS----EEEEESSHHHHHHHHHHHH
T ss_pred eEEEEEecCCC-----CCCEEEEEeCCCC---eEEEEeCCHHHHHHHHHHHH
Confidence 36666644321 4789999883333 39999999999999987743
No 182
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.90 E-value=1e+02 Score=30.58 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=62.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEeeCCCccce------ec-CCCCCCCcCCCCCCCCCCHHHH-----------------
Q 008945 204 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPL------EI-PSYPKLWDGAYSTSERYTMADA----------------- 259 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~frl------e~-~~~P~L~~Ga~~~~~~YT~~di----------------- 259 (548)
+.+...++++.+..-++..+-+-++..++... +. .+||++..|+ +..+|.+|+
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGa---GTVl~~e~a~~a~~aGA~FiVsP~~~ 101 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGV---GSIVDAATAALYIQLGANFIVTPLFN 101 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEee---EeCcCHHHHHHHHHcCCCEEECCCCC
Confidence 67889999999999999999998876654431 11 4688887554 344555554
Q ss_pred HHHHHHHHHcCCEEEEccCCCchhhHHH
Q 008945 260 AEIVSYAQKRGINVLAELDVPGHALSWG 287 (548)
Q Consensus 260 ~elv~yA~~rgI~VIPEID~PGH~~a~~ 287 (548)
.+++++|+++||-+||-+=+|.-.....
T Consensus 102 ~~v~~~~~~~~i~~iPG~~TpsEi~~A~ 129 (222)
T PRK07114 102 PDIAKVCNRRKVPYSPGCGSLSEIGYAE 129 (222)
T ss_pred HHHHHHHHHcCCCEeCCCCCHHHHHHHH
Confidence 4788999999999999999998876543
No 183
>PRK06836 aspartate aminotransferase; Provisional
Probab=30.86 E-value=1.3e+02 Score=31.89 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.5
Q ss_pred CCCCCCHHHHHHHHHHHHH------cCCEEE
Q 008945 250 TSERYTMADAAEIVSYAQK------RGINVL 274 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~------rgI~VI 274 (548)
.+..++.+++++|++.|++ +++-||
T Consensus 181 tG~~~~~~~~~~l~~la~~~~~~~~~~~~ii 211 (394)
T PRK06836 181 TGVVYSEETLKALAALLEEKSKEYGRPIYLI 211 (394)
T ss_pred CCcCCCHHHHHHHHHHHHHhhhccCCCeEEE
Confidence 4567999999999999999 787777
No 184
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=30.13 E-value=1.8e+02 Score=31.05 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=42.0
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEccCC
Q 008945 201 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKR-GINVLAELDV 279 (548)
Q Consensus 201 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~r-gI~VIPEID~ 279 (548)
..++.+.++++++.++..+...+.+ +- ++..-..|+.+|++++++. |+..| .|.|
T Consensus 88 ~~ls~eei~~~i~~~~~~Gv~~I~~--tG---------------------GEPllr~dl~eli~~l~~~~gi~~i-~itT 143 (373)
T PLN02951 88 HLLSQDEIVRLAGLFVAAGVDKIRL--TG---------------------GEPTLRKDIEDICLQLSSLKGLKTL-AMTT 143 (373)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEE--EC---------------------CCCcchhhHHHHHHHHHhcCCCceE-EEee
Confidence 5689999999999999888776554 32 2223356899999999997 87522 3456
Q ss_pred Cchh
Q 008945 280 PGHA 283 (548)
Q Consensus 280 PGH~ 283 (548)
-|..
T Consensus 144 NG~l 147 (373)
T PLN02951 144 NGIT 147 (373)
T ss_pred Ccch
Confidence 6653
No 185
>PRK09082 methionine aminotransferase; Validated
Probab=30.01 E-value=75 Score=33.67 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 251 SERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 251 ~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+..||.+++++|++.|++++|-||-
T Consensus 177 G~~~~~~~~~~i~~~a~~~~i~li~ 201 (386)
T PRK09082 177 GTVWSAADMRALWQLIAGTDIYVLS 201 (386)
T ss_pred CcCCCHHHHHHHHHHHHHCCEEEEE
Confidence 4578999999999999999998874
No 186
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.92 E-value=4.8e+02 Score=27.48 Aligned_cols=132 Identities=14% Similarity=0.189 Sum_probs=72.1
Q ss_pred CCCCccccceecCCC-CCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccce-----ecCCCCCC-CcCCCCC-CCCCCH-
Q 008945 186 QPRFSFRGLLIDTSR-HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPL-----EIPSYPKL-WDGAYST-SERYTM- 256 (548)
Q Consensus 186 ~P~f~~RG~mlD~aR-~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frl-----e~~~~P~L-~~Ga~~~-~~~YT~- 256 (548)
-|++.+ |++. +| .|.+-+.++++++.+..+++..=-+||-|=++.+- .+ .|-.. ....++. ...|-.
T Consensus 6 pP~wal-G~~~--sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~-~y~~~~~~~~~~~~~~~f~~~ 81 (340)
T cd06597 6 LPKWAF-GLWM--SANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDA-QYTPKDGGAPLSYDDFSFPVE 81 (340)
T ss_pred CchHHh-hhhh--hccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccc-hhcccccCCcceecccccCcc
Confidence 355555 5543 33 46789999999999999999855555532111100 00 01000 0000000 001111
Q ss_pred ---HHHHHHHHHHHHcCCEEE----EccCCCchh---------hHHHhhC----C--------CCCCCCCCCCCCCCCCh
Q 008945 257 ---ADAAEIVSYAQKRGINVL----AELDVPGHA---------LSWGKGY----P--------SLWPSKDCQEPLDVSNE 308 (548)
Q Consensus 257 ---~di~elv~yA~~rgI~VI----PEID~PGH~---------~a~~~~~----p--------~l~~~~~~~~~ld~~~~ 308 (548)
-|.+++|+.-+++|++|+ |-|+.=-|. .+..+.| . ..++ .....+|.+||
T Consensus 82 ~~FPdp~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~--g~~~~~Dftnp 159 (340)
T cd06597 82 GRWPNPKGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWF--PDSLMLDFTNP 159 (340)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccC--CCceeecCCCH
Confidence 268999999999999995 877631111 0111110 0 0011 01235899999
Q ss_pred HHHHHHHHHHHHHhh
Q 008945 309 FTFKVIDGILSDFSK 323 (548)
Q Consensus 309 ~t~~~l~~v~~E~~~ 323 (548)
++.+...+.++++.+
T Consensus 160 ~a~~Ww~~~~~~~~~ 174 (340)
T cd06597 160 EAAQWWMEKRRYLVD 174 (340)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888763
No 187
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=29.92 E-value=1.9e+02 Score=28.84 Aligned_cols=51 Identities=10% Similarity=0.107 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 208 IKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 208 lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
+.+.|+.++.++++.+++.+..-+.|. ...+|.++++++-+.++++||+|.
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~gl~ls 62 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWK----------------GVRLSEETAEKFKEALKENNIDVS 62 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCC----------------CCCCCHHHHHHHHHHHHHcCCCEE
Confidence 567899999999999999875433221 225789999999999999999865
No 188
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=29.56 E-value=3.8e+02 Score=30.39 Aligned_cols=104 Identities=15% Similarity=0.165 Sum_probs=69.2
Q ss_pred cc-eecCCCC-CCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcC
Q 008945 193 GL-LIDTSRH-YQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRG 270 (548)
Q Consensus 193 G~-mlD~aR~-f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rg 270 (548)
|. +|-++|. +-+-+.++++++.+..++++.|..= - +-=|-.....|.+|++++|
T Consensus 138 Gsd~LGs~R~k~~~~e~~~~i~~~l~~~~Id~LviI-G-----------------------GddS~~~A~~Lae~~~~~g 193 (550)
T cd00765 138 GFDMICSGRTKIETEDQFKQAEETAKKLDLDALVVI-G-----------------------GDDSNTNAALLAENFRSKG 193 (550)
T ss_pred ChhhhcCcCCCCCCHHHHHHHHHHHHHcCCCEEEEe-C-----------------------CchHHHHHHHHHHHHHhcC
Confidence 66 8999995 4456789999999999999999872 1 1115667788999999998
Q ss_pred --CEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHh-hhccC-ceeEe
Q 008945 271 --INVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFS-KVFKY-KFVHL 332 (548)
Q Consensus 271 --I~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~-~lF~~-~~iHi 332 (548)
|.|| =+|.=- .-+|.. .....++.-+.+.+++.++++++. +.-.+ +++||
T Consensus 194 ~~i~VI---GVPKTI------DNDl~~---t~id~s~GFdTA~k~~a~~I~ni~~Da~s~~~~~~~ 247 (550)
T cd00765 194 LKTRVI---GVPKTI------DGDLKN---KEIETSFGFDTATKIYSELIGNVMRDARSTGKYWHF 247 (550)
T ss_pred CCceEE---EEeeee------cCCCCC---CCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 6665 122110 112210 001346788889999999999997 44433 46663
No 189
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=29.50 E-value=1.7e+02 Score=30.62 Aligned_cols=25 Identities=8% Similarity=-0.067 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 251 SERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 251 ~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+..++.+++++|++.|+++++-||=
T Consensus 156 G~~~~~~~~~~i~~~a~~~~~~ii~ 180 (356)
T PRK08056 156 GLLPERQLLQAIAERCKSLNIALIL 180 (356)
T ss_pred CCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 4578999999999999999998774
No 190
>PRK07683 aminotransferase A; Validated
Probab=29.47 E-value=79 Score=33.55 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 251 SERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 251 ~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+..||.+++++|++.|+++|+-||-
T Consensus 175 G~~~s~~~~~~l~~~~~~~~~~ii~ 199 (387)
T PRK07683 175 GVTLSKEELQDIADVLKDKNIFVLS 199 (387)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 4579999999999999999998763
No 191
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=28.44 E-value=3.9e+02 Score=30.25 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=67.4
Q ss_pred cc-eecCCCC-CCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcC
Q 008945 193 GL-LIDTSRH-YQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRG 270 (548)
Q Consensus 193 G~-mlD~aR~-f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rg 270 (548)
|. ||-++|. +.+.+.+++.++.+..++++.|..= -. -=|......|.+|++++|
T Consensus 133 G~~~LGssR~k~~~~e~~~~~~~~l~~~~Id~LviI-GG-----------------------dgS~~~A~~Lae~~~~~g 188 (539)
T TIGR02477 133 GFDIIGSGRTKIETEEQFAKALTTAKKLKLDGLVII-GG-----------------------DDSNTNAALLAEYFAKHG 188 (539)
T ss_pred CchhhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEe-CC-----------------------chHHHHHHHHHHHHHhcC
Confidence 65 8999995 4467889999999999999999872 11 115566778889999888
Q ss_pred --CEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH-hhhccC-ceeEe
Q 008945 271 --INVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDF-SKVFKY-KFVHL 332 (548)
Q Consensus 271 --I~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~-~~lF~~-~~iHi 332 (548)
|.||= +|.= -.-+|.. .....++.-+.+.+++.++++++ .+.-.+ +++|+
T Consensus 189 ~~i~VIG---IPkT------IDNDl~~---~~td~s~GFdTA~~~~~~~I~~i~~Da~s~~~~~~~ 242 (539)
T TIGR02477 189 LKTQVIG---VPKT------IDGDLKN---QFIETSFGFDTACKIYSELIGNICRDALSAKKYWHF 242 (539)
T ss_pred CCceEEE---Eeee------ecCCCCC---CCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 66541 1110 0111110 01234677788888888888888 343332 56664
No 192
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.10 E-value=6.1e+02 Score=25.27 Aligned_cols=129 Identities=9% Similarity=0.137 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHH
Q 008945 207 IIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSW 286 (548)
Q Consensus 207 ~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~ 286 (548)
.+.+.++.++..++-.+.+.+.+... ++ ....++.+++++|-+.++++||+|.- +-+.+|..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~-------~~--------~~~~~~~~~~~~l~~~l~~~gl~i~~-~~~~~~~~-- 83 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDE-------RL--------ARLDWSREQRLALVNALVETGFRVNS-MCLSAHRR-- 83 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCcccc-------ch--------hccCCCHHHHHHHHHHHHHcCCceeE-Eecccccc--
Confidence 46788999999999999997543211 00 11236889999999999999998753 22333311
Q ss_pred HhhCCCCCCCCCCCCCCCCCCh----HHHHHHHHHHHHHhhhccCceeEecCCCCCCCCCCCCHHHHHHHHHCCCChhhH
Q 008945 287 GKGYPSLWPSKDCQEPLDVSNE----FTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNESQA 362 (548)
Q Consensus 287 ~~~~p~l~~~~~~~~~ld~~~~----~t~~~l~~v~~E~~~lF~~~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~l 362 (548)
+ .+.-.++ +..+.++..++... .+..+++-++|.+.... ...+. ..+.
T Consensus 84 ------~--------~~~~~~~~~r~~~~~~~~~~i~~a~-~lG~~~i~~~~~~~~~~--~~~~~-----------~~~~ 135 (283)
T PRK13209 84 ------F--------PLGSEDDAVRAQALEIMRKAIQLAQ-DLGIRVIQLAGYDVYYE--QANNE-----------TRRR 135 (283)
T ss_pred ------c--------CCCCCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEECCcccccc--ccHHH-----------HHHH
Confidence 0 0111233 34455555554333 34567777765432110 00011 1134
Q ss_pred HHHHHHHHHHHHHHcCCeE
Q 008945 363 YQYFVLQAQKIALLHGYEI 381 (548)
Q Consensus 363 ~~~f~~~~~~~l~~~g~~~ 381 (548)
+...++.+.++++++|.+.
T Consensus 136 ~~~~l~~l~~~A~~~GV~i 154 (283)
T PRK13209 136 FIDGLKESVELASRASVTL 154 (283)
T ss_pred HHHHHHHHHHHHHHhCCEE
Confidence 4556777888888888754
No 193
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.99 E-value=79 Score=31.84 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEcc
Q 008945 205 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 277 (548)
Q Consensus 205 ~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEI 277 (548)
++.+++.|+..+..+...+-++ +++.. ..... ........+.+++|.++|++.||+|.-|-
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~-----~~~~~----~~~~~---~~~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLA-----GYDVY----YEQAN---NETRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC-----Ccccc----ccccH---HHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 6679999999999999988775 22110 00000 00001235678999999999999999996
No 194
>PRK08175 aminotransferase; Validated
Probab=27.90 E-value=1.8e+02 Score=30.78 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
.+..|+.+++++|++.|+++||-||=
T Consensus 177 tG~~~~~~~~~~i~~~a~~~~i~ii~ 202 (395)
T PRK08175 177 TAQCVELEFFEKVVALAKRYDVLVVH 202 (395)
T ss_pred CCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 35679999999999999999998774
No 195
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVB, IVD, IVE, and IVF cPLA2 consists of two domains: the regulatory C2 domain and alpha/beta hydrolase PLA2 domain. Group IVB, IVD, IVE, and IVF cPLA2 are also referred to as cPLA2-beta, -delta, -epsilon, and -zeta respectively. cPLA2-beta is approximately 30% identical to cPLA2-alpha and it shows low enzymatic activity compared to cPLA2alpha. cPLA2-beta hydrolyzes palmitic acid from 1-[14C]palmitoyl-2-arachidonoyl-PC and arachidonic acid from 1-palmitoyl-2[14C]arachidonoyl-PC, but not from 1-O-alkyl-2[3H]arachidonoyl-PC. cPLA2-delta, -epsilon, and -zeta are approximately 45-50% identical to cPLA2-beta and 31-37% identical to cPLA2-alpha. It's possible that cPLA2-beta, -delta, -epsilon, and -zeta may have arisen by gene duplication from an ancestral gene. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bon
Probab=27.82 E-value=69 Score=35.96 Aligned_cols=94 Identities=20% Similarity=0.265 Sum_probs=59.8
Q ss_pred EEecCCCCccccceecCCCCCCChHHHHHHHHHHH------------HcCCc----------------------------
Q 008945 182 IINDQPRFSFRGLLIDTSRHYQPLPIIKNVIDSMA------------YAKLN---------------------------- 221 (548)
Q Consensus 182 ~I~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma------------~~KlN---------------------------- 221 (548)
.|+|.|..+-++---|..| ..|.+.+-+++..+- .++||
T Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~t~r~~~~~~~NF~~Gl~l~~~y~~~~~f~~w~~~~~d~~p~~l~~ 368 (541)
T cd07201 290 DIEDEPPLPPRPPERLTTL-LTPGGPLSQAFRDFLTSRPTVSQYFNFLRGLQLHNDYLENKGFSTWKDTHLDAFPNQLTP 368 (541)
T ss_pred ccccCcCcCCCCCcccccc-cCCCCHHHHHHHHHhccCcccccccHHHhccccccccccccccccccccCCccCchhccc
Confidence 5777887776666666665 666666555444321 12333
Q ss_pred -EEEEEeeCCCccceecCCCCCCCcCC---------CCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCC
Q 008945 222 -VLHWHIVDTQSFPLEIPSYPKLWDGA---------YSTSERYTMADAAEIVSYAQKRGINVLAELDVP 280 (548)
Q Consensus 222 -~lh~HltDdq~frle~~~~P~L~~Ga---------~~~~~~YT~~di~elv~yA~~rgI~VIPEID~P 280 (548)
.=|+||.|. ||-+.++-+|-|..|- |+.+. .-+.++..-.||++|||- -|.|+.+
T Consensus 369 ~~~~l~lvDa-g~~~N~p~ppllrP~R~VDlIisfd~Sa~~--~~~~L~~~~~y~~~~gIp-fPk~~~~ 433 (541)
T cd07201 369 SEDHLCLVDT-AFFINTSYPPLLRPERKVDVILSLNYSLGS--QFEPLKQASEYCSEQGIP-FPKIELS 433 (541)
T ss_pred cccceeeeec-ccccCCCCCcccCCCCcccEEEEeccccCC--cchHHHHHHHHHHHcCCC-CCCCCCC
Confidence 114777775 8888888888775221 22222 667899999999999998 6666543
No 196
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=27.33 E-value=2.9e+02 Score=28.43 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEcc
Q 008945 204 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 277 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEI 277 (548)
+.+.+++.++.+...+.+.+-+.++...+.+- .......++.++++++++.|+++|+.|.-..
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~-----------~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPG-----------DPPPDTQFSEEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCC-----------CCCcccCcCHHHHHHHHHHHHHcCCEEEEEe
Confidence 47888999999999999999988754221111 0112235899999999999999999987554
No 197
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.27 E-value=89 Score=31.35 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEcc
Q 008945 205 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 277 (548)
Q Consensus 205 ~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEI 277 (548)
++.+++.|+..+.++.+.+-++-.+. + .. +..++ .-.-..+.+++|.++|++.||++.-|-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~--~-~~-~~~~~--------~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYDV--Y-YE-EKSEE--------TRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccc--c-cc-cccHH--------HHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 67899999999999999998752110 0 00 00000 001134679999999999999999886
No 198
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=27.24 E-value=3.9e+02 Score=28.78 Aligned_cols=150 Identities=11% Similarity=0.065 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEecCC
Q 008945 256 MADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGD 335 (548)
Q Consensus 256 ~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHiGgD 335 (548)
..-.+.+++-+.+.|++.++-+++-+++ .|+- .....++ ++-.+++++++...- .+++|..
T Consensus 128 ~~~~~~~~~a~~~~g~r~~~~~~~~~~~------~p~~---------~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~ 188 (421)
T COG0402 128 AESADAAFEAALEVGLRAVLGPVLQDVA------FPDP---------GAETDEE-LEETEELLREAHGLG---RDVVGLA 188 (421)
T ss_pred hhhHHHHHHHHHHhCCeeEeeeccccCC------CCcc---------cccchHH-HHHHHHHHHHHhcCC---CeeEEEe
Confidence 3445678889999999999888777764 2211 1111222 334444444444332 4444443
Q ss_pred CCC-CCCCCCCH----HHHHHHHHCCCChhhHHHHHHHHHHHHHHHcCCeEEEcccchhccCCCC-CCCeEEEecC-CCc
Q 008945 336 EVN-TSCWTLTP----HVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKL-SPKTVVHNWL-GGG 408 (548)
Q Consensus 336 Ev~-~~~w~~~p----~~~~~~~~~g~~~~~l~~~f~~~~~~~l~~~g~~~~~W~d~~~~~~~~l-~~~~iv~~W~-~~~ 408 (548)
-.. ..| ++ .+.+..++.|.-..--...-...+....+..|++++.|.+... .+ ++...++.+. ...
T Consensus 189 p~~~~~~---~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~~~~~~~g----~l~~~~~~~H~~~~~~~ 261 (421)
T COG0402 189 PHFPYTV---SPELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPVERLDLLG----LLGSHTLLAHCVHLSEE 261 (421)
T ss_pred cCCCCCC---CHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCHHHHHHHcC----CCCCCeEEEEeccCCHH
Confidence 322 221 23 2223333223211000001112222333357888888875432 22 4456666554 445
Q ss_pred HHHHHHHhcCcEEEeCCCccccc
Q 008945 409 VAQRVVAAGLRCIVSNQDKWYLD 431 (548)
Q Consensus 409 ~~~~~~~~Gy~vI~s~~~~~Yld 431 (548)
....++++|-.++.||-..++|.
T Consensus 262 e~~~l~~~g~~v~~cP~sN~~L~ 284 (421)
T COG0402 262 ELELLAESGASVVHCPRSNLKLG 284 (421)
T ss_pred HHHHHhhCCCeEEECcchhcccc
Confidence 66667789999999998888774
No 199
>PRK05764 aspartate aminotransferase; Provisional
Probab=26.75 E-value=94 Score=32.77 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 251 SERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 251 ~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+..++.+++++|++.|+++||-||-
T Consensus 178 G~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 178 GAVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred CcccCHHHHHHHHHHHHHCCcEEEE
Confidence 4568999999999999999998874
No 200
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=26.36 E-value=63 Score=31.49 Aligned_cols=118 Identities=15% Similarity=0.208 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEeeCCCccce---ecCCCCCCCcCCCCCCCCCCHHHH-----------------HHH
Q 008945 203 QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPL---EIPSYPKLWDGAYSTSERYTMADA-----------------AEI 262 (548)
Q Consensus 203 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frl---e~~~~P~L~~Ga~~~~~~YT~~di-----------------~el 262 (548)
.+.+...++++.|..-++..+-+-++...+... -.+.||++..|+ +..+|.+|+ .++
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGA---GTV~~~e~a~~a~~aGA~FivSP~~~~~v 93 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGA---GTVLTAEQAEAAIAAGAQFIVSPGFDPEV 93 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEE---ES--SHHHHHHHHHHT-SEEEESS--HHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEE---EeccCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 356888999999999999999998876644321 123678887554 344555554 478
Q ss_pred HHHHHHcCCEEEEccCCCchhhHHHh-hCCCCCCCCCCCCCCCCCChHH-HHHHHHHHHHHhhhccC-ceeEecCC
Q 008945 263 VSYAQKRGINVLAELDVPGHALSWGK-GYPSLWPSKDCQEPLDVSNEFT-FKVIDGILSDFSKVFKY-KFVHLGGD 335 (548)
Q Consensus 263 v~yA~~rgI~VIPEID~PGH~~a~~~-~~p~l~~~~~~~~~ld~~~~~t-~~~l~~v~~E~~~lF~~-~~iHiGgD 335 (548)
+++|+++||-+||-+=||.-...... +..-+. +=|...-- .. .++.+...||. +++=.||=
T Consensus 94 ~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK--------~FPA~~~GG~~----~ik~l~~p~p~~~~~ptGGV 157 (196)
T PF01081_consen 94 IEYAREYGIPYIPGVMTPTEIMQALEAGADIVK--------LFPAGALGGPS----YIKALRGPFPDLPFMPTGGV 157 (196)
T ss_dssp HHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEE--------ETTTTTTTHHH----HHHHHHTTTTT-EEEEBSS-
T ss_pred HHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEE--------EecchhcCcHH----HHHHHhccCCCCeEEEcCCC
Confidence 89999999999999999988765443 222110 01111111 23 34556677875 77777774
No 201
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=26.10 E-value=1.3e+02 Score=30.11 Aligned_cols=64 Identities=23% Similarity=0.442 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhccC
Q 008945 250 TSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKY 327 (548)
Q Consensus 250 ~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~ 327 (548)
..+.|.-++...++++|+++||+|- ||+..|....|.-.. +.+.++..+.+.+-+++++.-|.+
T Consensus 9 ~~G~~n~~~~D~~~~~a~~~gi~v~------gH~l~W~~~~P~W~~--------~~~~~~~~~~~~~~i~~v~~ry~g 72 (254)
T smart00633 9 SRGQFNFSGADAIVNFAKENGIKVR------GHTLVWHSQTPDWVF--------NLSKETLLARLENHIKTVVGRYKG 72 (254)
T ss_pred CCCccChHHHHHHHHHHHHCCCEEE------EEEEeecccCCHhhh--------cCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3467889999999999999999985 787655443443210 112445556666666776666654
No 202
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=25.93 E-value=1.3e+02 Score=31.26 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCcEEEEEeeCCCccc--eecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 208 IKNVIDSMAYAKLNVLHWHIVDTQSFP--LEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 208 lk~~Id~ma~~KlN~lh~HltDdq~fr--le~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
=|.+++.+|..=-|..-+-+-+ .|| +....||++. ...|.+|+.+.++||+..|++-+.
T Consensus 273 TkpI~~wiae~~g~~~~vNiM~--QY~P~ykA~eypeI~-------R~lt~eE~e~a~~~a~~~gl~~~~ 333 (335)
T COG1313 273 TKPILRWIAENLGNDVRVNIMF--QYRPEYKAEEYPEIN-------RRLTREEYEKALEYAEKLGLTNIL 333 (335)
T ss_pred cHHHHHHHHHhCCCCeeEEehh--hccchhhhhhchhhc-------ccCCHHHHHHHHHHHHHcCCceee
Confidence 4666666666544322222211 111 1223578874 568999999999999999998653
No 203
>PLN03059 beta-galactosidase; Provisional
Probab=25.55 E-value=1.2e+03 Score=27.91 Aligned_cols=81 Identities=21% Similarity=0.319 Sum_probs=58.4
Q ss_pred ceEEecCCCCccccceecCCCCC--CChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHH
Q 008945 180 PWIINDQPRFSFRGLLIDTSRHY--QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMA 257 (548)
Q Consensus 180 ~~~I~D~P~f~~RG~mlD~aR~f--~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~ 257 (548)
.+.|...|.+-+-|-| || +|.+..++.|..|...++|++..++ -|.+- |-..|.|.-.+ ..
T Consensus 36 ~f~idG~p~~i~sG~i-----HY~R~~p~~W~d~L~k~Ka~GlNtV~tYV----~Wn~H-----Ep~~G~~dF~G---~~ 98 (840)
T PLN03059 36 AFIINGQRRILISGSI-----HYPRSTPEMWPDLIQKAKDGGLDVIQTYV----FWNGH-----EPSPGNYYFED---RY 98 (840)
T ss_pred EEEECCEEEEEEEeCc-----ccCcCCHHHHHHHHHHHHHcCCCeEEEEe----ccccc-----CCCCCeeeccc---hH
Confidence 4566777777666655 55 5689999999999999999999665 23321 11234443332 68
Q ss_pred HHHHHHHHHHHcCCEEEEcc
Q 008945 258 DAAEIVSYAQKRGINVLAEL 277 (548)
Q Consensus 258 di~elv~yA~~rgI~VIPEI 277 (548)
|+..+++.|++.|+-||--+
T Consensus 99 DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 99 DLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHHHHHcCCEEEecC
Confidence 99999999999999998653
No 204
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.24 E-value=89 Score=32.66 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhccCCCeEEeeccceEEecCCCCcccccee-----------------------cCCCCCCChHHHHHH
Q 008945 155 LHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRGLLI-----------------------DTSRHYQPLPIIKNV 211 (548)
Q Consensus 155 ~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~~RG~ml-----------------------D~aR~f~~~~~lk~~ 211 (548)
|+-+++|.++|..-.. ..+....++++| .|+++.-.. ...+.|++.+.+|++
T Consensus 13 ~~~~~~ik~~id~ma~---~K~N~lhlHltD--~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~ei 87 (326)
T cd06564 13 YYSMDFLKDIIKTMSW---YKMNDLQLHLND--NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKEL 87 (326)
T ss_pred CCCHHHHHHHHHHHHH---cCCceEEEeecC--CcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHH
Confidence 4568888888874321 122233467778 444442211 235689999999999
Q ss_pred HHHHHHcCCcEE
Q 008945 212 IDSMAYAKLNVL 223 (548)
Q Consensus 212 Id~ma~~KlN~l 223 (548)
++..+.++++++
T Consensus 88 v~yA~~rgI~vI 99 (326)
T cd06564 88 IAYAKDRGVNII 99 (326)
T ss_pred HHHHHHcCCeEe
Confidence 999999999875
No 205
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=24.91 E-value=1.4e+02 Score=30.21 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEcc
Q 008945 253 RYTMADAAEIVSYAQKRGINVLAEL 277 (548)
Q Consensus 253 ~YT~~di~elv~yA~~rgI~VIPEI 277 (548)
..+.++..++|+.|+++|..|+||+
T Consensus 109 ~l~~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 109 DLPEEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp ---HHHHHHHHHHHCCTTSEEEEEE
T ss_pred eCCHHHHHHHHHHHHHCCCEEeecc
Confidence 3678999999999999999999998
No 206
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=24.88 E-value=2.3e+02 Score=28.56 Aligned_cols=50 Identities=16% Similarity=0.310 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEcc
Q 008945 206 PIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 277 (548)
Q Consensus 206 ~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEI 277 (548)
..++++++....++++++-+ || | .-..+.++..++|+.++++|..|.||+
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi--S~----------------G----~~~i~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI--SD----------------G----SMEISLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE--cC----------------C----ccCCCHHHHHHHHHHHHhCCCeEeccc
Confidence 45566666777777766544 22 1 123578899999999999999999997
No 207
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=24.75 E-value=4.7e+02 Score=26.82 Aligned_cols=90 Identities=23% Similarity=0.261 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCEEEEccCCCc--hhhHHHhhCCCCCCCCCCCCCCCCCChHHH-HHHHHHHHHHhhhccCceeEecCC
Q 008945 259 AAEIVSYAQKRGINVLAELDVPG--HALSWGKGYPSLWPSKDCQEPLDVSNEFTF-KVIDGILSDFSKVFKYKFVHLGGD 335 (548)
Q Consensus 259 i~elv~yA~~rgI~VIPEID~PG--H~~a~~~~~p~l~~~~~~~~~ld~~~~~t~-~~l~~v~~E~~~lF~~~~iHiGgD 335 (548)
..+++..|+++|++|+|.|-..+ +..+-. ... =.++++.. .|+.++++-+.+. |-|
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~--~~~-----------~l~~~~~r~~fi~~iv~~l~~~--------~~D 105 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSEL--AHA-----------VLSNPEARQRLINNILALAKKY--------GYD 105 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHH--HHH-----------HhcCHHHHHHHHHHHHHHHHHh--------CCC
Confidence 35899999999999999984322 111000 000 01345544 4888888776653 223
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHcCCe
Q 008945 336 EVNTSCWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYE 380 (548)
Q Consensus 336 Ev~~~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~l~~~g~~ 380 (548)
=+... |+.-+. +..+.+..|++++...++++|+.
T Consensus 106 GidiD-wE~~~~----------~d~~~~~~fl~~lr~~l~~~~~~ 139 (313)
T cd02874 106 GVNID-FENVPP----------EDREAYTQFLRELSDRLHPAGYT 139 (313)
T ss_pred cEEEe-cccCCH----------HHHHHHHHHHHHHHHHhhhcCcE
Confidence 22111 322100 12356889999999999887765
No 208
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=23.91 E-value=41 Score=37.08 Aligned_cols=22 Identities=45% Similarity=0.729 Sum_probs=16.6
Q ss_pred HHHHHcCCEEEE-------------ccCCCchhhH
Q 008945 264 SYAQKRGINVLA-------------ELDVPGHALS 285 (548)
Q Consensus 264 ~yA~~rgI~VIP-------------EID~PGH~~a 285 (548)
+.-++|||+|.- =+|+|||+..
T Consensus 47 DlEkERGITILaKnTav~~~~~~INIvDTPGHADF 81 (603)
T COG1217 47 DLEKERGITILAKNTAVNYNGTRINIVDTPGHADF 81 (603)
T ss_pred chhhhcCcEEEeccceeecCCeEEEEecCCCcCCc
Confidence 345788887754 4899999974
No 209
>PRK09989 hypothetical protein; Provisional
Probab=23.89 E-value=1.2e+02 Score=30.30 Aligned_cols=78 Identities=14% Similarity=0.010 Sum_probs=46.1
Q ss_pred ccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 008945 192 RGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGI 271 (548)
Q Consensus 192 RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI 271 (548)
=|+++|+..-+..=..+..+|+. ++=-..|+|+.|.... ..| ..| .=++.++++..++.|.
T Consensus 173 v~l~lD~~h~~~~~~~~~~~i~~---~~~ri~hvHi~D~~~~-----~~p--G~G---------~id~~~i~~al~~~Gy 233 (258)
T PRK09989 173 VFIQLDTFHAQKVDGNLTHLIRD---YAGKYAHVQIAGLPDR-----HEP--DDG---------EINYPWLFRLFDEVGY 233 (258)
T ss_pred eEEEeehHhHHHcCCCHHHHHHH---hhhhEEEEEECCCCCC-----CCC--CCC---------CcCHHHHHHHHHHcCC
Confidence 38899987433321223333333 2234669999983221 111 112 1377889999999887
Q ss_pred E--EEEccCCCchhhHHHh
Q 008945 272 N--VLAELDVPGHALSWGK 288 (548)
Q Consensus 272 ~--VIPEID~PGH~~a~~~ 288 (548)
+ |..|+--.||+...++
T Consensus 234 ~g~is~E~~~~~~~~~~~~ 252 (258)
T PRK09989 234 QGWIGCEYKPRGLTEEGLG 252 (258)
T ss_pred CeEEEEEEeeCCCCHHHHH
Confidence 5 7788888888776443
No 210
>PRK05967 cystathionine beta-lyase; Provisional
Probab=23.75 E-value=1e+02 Score=33.27 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 252 ERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 252 ~~YT~~di~elv~yA~~rgI~VIP 275 (548)
..++..||++|++.|+++|+-||-
T Consensus 161 P~l~v~dl~~I~~la~~~g~~vvV 184 (395)
T PRK05967 161 NTFEMQDIPAIAEAAHRHGAIVMM 184 (395)
T ss_pred CCCcHHHHHHHHHHHHHhCCEEEE
Confidence 457999999999999999998775
No 211
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=23.74 E-value=3.7e+02 Score=29.36 Aligned_cols=52 Identities=4% Similarity=-0.039 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 208 IKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 208 lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+.+.+.....++.|+|++-+..-++|+- ..++.++++++.+.++++||.+.|
T Consensus 143 ~~~a~~~a~~~g~~afqiF~~npr~w~~----------------~~~~~~~~~~f~~~~~~~gi~~~~ 194 (413)
T PTZ00372 143 VDNSPINAYNIAGQAFALFLKNQRTWNS----------------PPLSDETIDKFKENCKKYNYDPKF 194 (413)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCccCCC----------------CCCCHHHHHHHHHHHHHcCCCcce
Confidence 5667888899999999999888778852 236899999999999999997543
No 212
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=23.63 E-value=59 Score=36.55 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHcCCEEE----------------EccCCCchhhH
Q 008945 255 TMADAAEIVSYAQKRGINVL----------------AELDVPGHALS 285 (548)
Q Consensus 255 T~~di~elv~yA~~rgI~VI----------------PEID~PGH~~a 285 (548)
-++++-+=++--++|||+|- =-||||||...
T Consensus 92 ~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 92 GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 46788888888899999874 34999999874
No 213
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=23.54 E-value=6.8e+02 Score=28.58 Aligned_cols=153 Identities=12% Similarity=0.086 Sum_probs=90.4
Q ss_pred EEEEecCchhhHHHHHHHHHHHhhc-cCCCeEEeecc--------ceEEecCCC--Cccc-cc-eecCCCCC-CChHHHH
Q 008945 144 AHLEAQTVYGALHGLQTLSQLCQFN-FSSRVIEILMT--------PWIINDQPR--FSFR-GL-LIDTSRHY-QPLPIIK 209 (548)
Q Consensus 144 i~I~a~~~~G~~~gl~Tl~QL~~~~-~~~~~~~~~~~--------~~~I~D~P~--f~~R-G~-mlD~aR~f-~~~~~lk 209 (548)
|...|.+.-|.-..+..+..-+... ....-+.+..+ -+.+.+..- |... |+ ||-++|.. -..+.++
T Consensus 101 Iv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~ 180 (568)
T PLN02251 101 VVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFK 180 (568)
T ss_pred EECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHHH
Confidence 6777788888887777776655332 11111111111 122333222 3322 55 78888864 3577899
Q ss_pred HHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcC--CEEEEccCCCchhhHHH
Q 008945 210 NVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRG--INVLAELDVPGHALSWG 287 (548)
Q Consensus 210 ~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rg--I~VIPEID~PGH~~a~~ 287 (548)
+.++.+..++++.|..==- + =|-.....|.+|++++| |.||= +|.=
T Consensus 181 ~~~~~l~~l~Id~LViIGG----------------------d--dS~~~A~~Lae~~~~~g~~i~VIG---VPKT----- 228 (568)
T PLN02251 181 QAEETATKLDLDGLVVIGG----------------------D--DSNTNACLLAEYFRAKNLKTRVIG---CPKT----- 228 (568)
T ss_pred HHHHHHHHcCCCEEEEeCC----------------------c--hHHHHHHHHHHHHHhcCCCeeEEE---eCce-----
Confidence 9999999999999987211 1 15567778899999998 77761 1110
Q ss_pred hhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcc-C-ceeEe
Q 008945 288 KGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFK-Y-KFVHL 332 (548)
Q Consensus 288 ~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~-~-~~iHi 332 (548)
-.-+|.. ..-..++.-+.+.+++.++++++..--. . +++|+
T Consensus 229 -IDNDL~~---td~e~s~GFdTA~k~~a~~I~ni~~da~S~~k~~~~ 271 (568)
T PLN02251 229 -IDGDLKS---KEVPTSFGFDTACKIYSEMIGNVMIDARSTGKYYHF 271 (568)
T ss_pred -EeCCCCC---CcCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 0111210 0011367788888999999988865332 2 57775
No 214
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=23.54 E-value=7.5e+02 Score=24.69 Aligned_cols=131 Identities=9% Similarity=0.143 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhH
Q 008945 206 PIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALS 285 (548)
Q Consensus 206 ~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a 285 (548)
..+.+.++.++.+++..+.+.+.+...+ + ....++.++++++.+..+++||.|.- +.+.+|..
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~---------~------~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~~~- 78 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDR---------L------SRLDWSREQRLALVNAIIETGVRIPS-MCLSAHRR- 78 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccch---------h------hccCCCHHHHHHHHHHHHHcCCCcee-eecCCCcc-
Confidence 4467788889999999888854331100 0 11236899999999999999998762 22222111
Q ss_pred HHhhCCCCCCCCCCCCCCCCCChH----HHHHHHHHHHHHhhhccCceeEecCCCCCCCCCCCCHHHHHHHHHCCCChhh
Q 008945 286 WGKGYPSLWPSKDCQEPLDVSNEF----TFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNESQ 361 (548)
Q Consensus 286 ~~~~~p~l~~~~~~~~~ld~~~~~----t~~~l~~v~~E~~~lF~~~~iHiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~ 361 (548)
.++...+++ ..+.+++.++-... +..+++.+++=+..... .... ..+
T Consensus 79 ---------------~~l~~~~~~~r~~~~~~~~~~i~~a~~-lG~~~v~~~~~~~~~~~--~~~~-----------~~~ 129 (279)
T TIGR00542 79 ---------------FPLGSKDKAVRQQGLEIMEKAIQLARD-LGIRTIQLAGYDVYYEE--HDEE-----------TRR 129 (279)
T ss_pred ---------------CcCCCcCHHHHHHHHHHHHHHHHHHHH-hCCCEEEecCcccccCc--CCHH-----------HHH
Confidence 011112333 34445555543333 35577777653221100 0000 013
Q ss_pred HHHHHHHHHHHHHHHcCCeEE
Q 008945 362 AYQYFVLQAQKIALLHGYEIV 382 (548)
Q Consensus 362 l~~~f~~~~~~~l~~~g~~~~ 382 (548)
.+...++++.+++++.|.+..
T Consensus 130 ~~~~~l~~l~~~A~~~Gv~l~ 150 (279)
T TIGR00542 130 RFREGLKEAVELAARAQVTLA 150 (279)
T ss_pred HHHHHHHHHHHHHHHcCCEEE
Confidence 344566777888888887643
No 215
>PF05213 Corona_NS2A: Coronavirus NS2A protein; InterPro: IPR007878 This entry is represented by Coronavirus non-structural protein 2A (32kDa); it is a family of uncharacterised viral proteins. Members have a phosphoesterase module (2H) [] and are predicted to be involved in RNA modification. The viral group of 2H phosphoesterases contains proteins from two unrelated virus types: the type C rotaviruses (VP3 protein, IPR011181 from INTERPRO) that are double stranded multipartite RNA viruses and the coronaviruses (NS2 protein, this group) that are positive strand RNA viruses. Given that these viruses have vertebrate hosts, it is likely that the 2H phosphoesterase domain was derived from the host by one of virus groups followed by rapid sequence divergence []. Subsequently, it may have been exchanged between the viral families. Although the direction of the exchange is not clear, it is possible that a double stranded replicative form of a subgenomic RNA transcript of the coronavirus NS2 was stabilised by a rotavirus and incorporated into its multiple double stranded RNA genome []. These proteins can be utilised as novel drug targets because of their predicted RNA modification role.
Probab=23.37 E-value=1.1e+02 Score=30.33 Aligned_cols=101 Identities=21% Similarity=0.314 Sum_probs=62.1
Q ss_pred CchhhHHHHHHHHHHHhhccCCCeEEeeccceEEecCCCCccccceecCCCCCCC-hH-HHHHHHHHHHHcCCcEEEE--
Q 008945 150 TVYGALHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFSFRGLLIDTSRHYQP-LP-IIKNVIDSMAYAKLNVLHW-- 225 (548)
Q Consensus 150 ~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~~RG~mlD~aR~f~~-~~-~lk~~Id~ma~~KlN~lh~-- 225 (548)
..-+.|++||. ||+..+. ++.++-.|.. -+.|||++-+=++ |+ .|+++||.|.+.+++.--=
T Consensus 19 ~f~~~~~~LQ~--~~~~eG~----------d~k~QkaPHl--Sl~mL~Isd~~i~~V~~~iq~ViddM~~~~~~it~tnp 84 (248)
T PF05213_consen 19 GFMLNFKDLQF--QLLEEGV----------DCKLQKAPHL--SLGMLDISDEDIPDVETAIQKVIDDMVWFEGDITFTNP 84 (248)
T ss_pred hHHHHHHHHHH--HHHHcCC----------CccccccCee--EEEEEEcChhhhhhHHHHHHHHHHHhhcccceEEecCc
Confidence 45677777774 7887542 2345556655 5689999988777 55 7899999999999832111
Q ss_pred EeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHH
Q 008945 226 HIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWG 287 (548)
Q Consensus 226 HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~ 287 (548)
|+-+ .-+-++.+++ .+=--+|+.+-+++|| +.|.++-|.
T Consensus 85 ~MLg-~~yV~nV~Gv---------------~slh~ki~n~~~~kgi-------t~gQSRmwI 123 (248)
T PF05213_consen 85 HMLG-RCYVANVKGV---------------LSLHDKIVNVFRKKGI-------TFGQSRMWI 123 (248)
T ss_pred eeec-cEEEEecccH---------------HHHHHHHHHHHHHhCc-------CcCcccccc
Confidence 1111 1111222111 2234578888999999 456666553
No 216
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.33 E-value=82 Score=31.38 Aligned_cols=74 Identities=14% Similarity=0.046 Sum_probs=48.2
Q ss_pred ccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCC--CCCHHHHHHHHHHHH
Q 008945 190 SFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSE--RYTMADAAEIVSYAQ 267 (548)
Q Consensus 190 ~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~--~YT~~di~elv~yA~ 267 (548)
..|++-+|.++.-...+.+++.|+.+..++..++..+.... + +... ... ....+.++++.++|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga~~i~~~~g~~---~------~~~~-----~~~~~~~~~~~l~~l~~~a~ 134 (258)
T PRK09997 69 GERGIACIPGREEEFRDGVAAAIRYARALGNKKINCLVGKT---P------AGFS-----SEQIHATLVENLRYAANMLM 134 (258)
T ss_pred CcCccccCCCcHHHHHHHHHHHHHHHHHhCCCEEEECCCCC---C------CCCC-----HHHHHHHHHHHHHHHHHHHH
Confidence 35555555554332357799999999999999887753210 0 0000 000 124567899999999
Q ss_pred HcCCEEEEcc
Q 008945 268 KRGINVLAEL 277 (548)
Q Consensus 268 ~rgI~VIPEI 277 (548)
++||++.-|-
T Consensus 135 ~~Gv~l~lE~ 144 (258)
T PRK09997 135 KEDILLLIEP 144 (258)
T ss_pred HcCCEEEEEe
Confidence 9999999883
No 217
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=23.14 E-value=82 Score=25.68 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHhhCCCC
Q 008945 252 ERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSL 293 (548)
Q Consensus 252 ~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l 293 (548)
.-+...=+++.++||+++|..|+|.= .=+..+++.+|++
T Consensus 37 qGia~~L~~~~l~~a~~~~~kv~p~C---~y~~~~~~~hpey 75 (78)
T PF14542_consen 37 QGIAKKLVEAALDYARENGLKVVPTC---SYVAKYFRRHPEY 75 (78)
T ss_dssp TTHHHHHHHHHHHHHHHTT-EEEETS---HHHHHHHHH-GGG
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEEEC---HHHHHHHHhCccc
Confidence 34678889999999999999999962 2334566667764
No 218
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=22.84 E-value=80 Score=31.78 Aligned_cols=51 Identities=10% Similarity=0.274 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEe
Q 008945 253 RYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHL 332 (548)
Q Consensus 253 ~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHi 332 (548)
.++.++.++|.+||+++||..+-. |-+.++.+|++++ .-+++=|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~st----------------------------pfd~~s~d~l~~~--------~~~~~KI 95 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFST----------------------------PFDEESVDFLEEL--------GVPAYKI 95 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEE----------------------------E-SHHHHHHHHHH--------T-SEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEC----------------------------CCCHHHHHHHHHc--------CCCEEEe
Confidence 489999999999999999998733 2356677776543 3577888
Q ss_pred cCCCCCC
Q 008945 333 GGDEVNT 339 (548)
Q Consensus 333 GgDEv~~ 339 (548)
+.-|...
T Consensus 96 aS~dl~n 102 (241)
T PF03102_consen 96 ASGDLTN 102 (241)
T ss_dssp -GGGTT-
T ss_pred ccccccC
Confidence 8887764
No 219
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=22.76 E-value=5.6e+02 Score=27.96 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=37.2
Q ss_pred HHHHHHHHHH-HHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHc-----CCEEEEccCC
Q 008945 206 PIIKNVIDSM-AYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKR-----GINVLAELDV 279 (548)
Q Consensus 206 ~~lk~~Id~m-a~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~r-----gI~VIPEID~ 279 (548)
+.|++.|+.+ ..+|-..+-+.-| .-|++ --+|++.+++-++++ |+.||| +++
T Consensus 77 ~~L~~~I~~~~~~~~P~~I~V~tt----------C~~ei-----------IGDDi~~v~~~~~~e~p~~~~~pvi~-v~t 134 (432)
T TIGR01285 77 EHIEEAIDTLCQRNKPKAIGLLST----------GLTET-----------RGEDIARVVRQFREKHPQHKGTAVVT-VNT 134 (432)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCC----------Ccccc-----------cccCHHHHHHHHHhhcccccCCeEEE-ecC
Confidence 5566666644 3556655555422 23333 347999999988874 899998 888
Q ss_pred Cchhh
Q 008945 280 PGHAL 284 (548)
Q Consensus 280 PGH~~ 284 (548)
||=.+
T Consensus 135 pgf~g 139 (432)
T TIGR01285 135 PDFKG 139 (432)
T ss_pred CCcCC
Confidence 87544
No 220
>PLN02672 methionine S-methyltransferase
Probab=22.53 E-value=1.1e+02 Score=37.53 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=38.1
Q ss_pred HHHcCCcEEEEEeeCCCccceecCCCCC---------CC-cCC--CCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 215 MAYAKLNVLHWHIVDTQSFPLEIPSYPK---------LW-DGA--YSTSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 215 ma~~KlN~lh~HltDdq~frle~~~~P~---------L~-~Ga--~~~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
+..++.++..+-+.++.||.+..+.+.+ +- ..+ ...+..||.+++++|++.|+++|+.||=
T Consensus 795 a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIs 867 (1082)
T PLN02672 795 AKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVII 867 (1082)
T ss_pred HHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 4455666666666445566654321111 11 111 2235679999999999999999998873
No 221
>TIGR03586 PseI pseudaminic acid synthase.
Probab=21.87 E-value=3.2e+02 Score=28.77 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHHcCCcE--EEEEeeCCCccceecCCCCC--CC-cCCCCC--------CCCCCHHHHHHHHHHHHHcC
Q 008945 204 PLPIIKNVIDSMAYAKLNV--LHWHIVDTQSFPLEIPSYPK--LW-DGAYST--------SERYTMADAAEIVSYAQKRG 270 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~--lh~HltDdq~frle~~~~P~--L~-~Ga~~~--------~~~YT~~di~elv~yA~~rg 270 (548)
+++..|++||..+..+.+. ||.+-.|. +- .+..++ .. .+.|.. .-.++.++.++|.+||+++|
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~--l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~G 90 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDT--IT--LDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELG 90 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHH--hh--ccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhC
Confidence 6899999999999999985 55443332 11 111111 00 112210 12368899999999999999
Q ss_pred CEEEEcc
Q 008945 271 INVLAEL 277 (548)
Q Consensus 271 I~VIPEI 277 (548)
|.++-+.
T Consensus 91 i~~~stp 97 (327)
T TIGR03586 91 LTIFSSP 97 (327)
T ss_pred CcEEEcc
Confidence 9999764
No 222
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=21.85 E-value=2.5e+02 Score=31.85 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 008945 206 PIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLA 275 (548)
Q Consensus 206 ~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIP 275 (548)
..|+|.|+.|..++++++-- +.+|+.= |.+|+..|.+||+++||.++.
T Consensus 359 ~NL~RHIenvr~FGvPvVVA-----------INKFd~D-----------Te~Ei~~I~~~c~e~Gv~va~ 406 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVA-----------INKFVTD-----------TDAEIAALKELCEELGVEVAL 406 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEE-----------EeCCCCC-----------CHHHHHHHHHHHHHcCCCEEE
Confidence 56899999999999997755 2233321 788999999999999999873
No 223
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.85 E-value=3.1e+02 Score=29.16 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=52.1
Q ss_pred cCCCCccccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHH
Q 008945 185 DQPRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVS 264 (548)
Q Consensus 185 D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~ 264 (548)
|+|.=.-|.-+.-+.++| |++.+.+.++......-..+.+. ..-.|.+. =|.+|+++|.+
T Consensus 219 hA~~~e~R~~l~Pi~~~~-~le~ll~al~~~~~~~~r~v~ie----------yvLI~GvN---------Ds~eda~~L~~ 278 (342)
T PRK14465 219 NHPDPNGRLQIMDIEEKF-PLEELLQAAKDFTRELKRRITFE----------YVMIPGVN---------MGRENANKLVK 278 (342)
T ss_pred cCCChhhcceEeeccccC-CHHHHHHHHHHHHHHcCCEEEEE----------EEEECCcc---------CCHHHHHHHHH
Confidence 699999999999988887 98988888886654322333322 22233332 37899999999
Q ss_pred HHHH--cCCEEEEcc
Q 008945 265 YAQK--RGINVLAEL 277 (548)
Q Consensus 265 yA~~--rgI~VIPEI 277 (548)
+++. -+|++||-=
T Consensus 279 ll~~l~~kVnLIPyN 293 (342)
T PRK14465 279 IARSLDCKINVIPLN 293 (342)
T ss_pred HHhhCCCcEEEEccC
Confidence 9999 466777753
No 224
>PRK01060 endonuclease IV; Provisional
Probab=21.71 E-value=1.6e+02 Score=29.54 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=42.1
Q ss_pred cceecCCCCCCCh----HHHHHHHHHHHHcCC--cEEEEEeeCCCccce-ecCCCCCCCcCCCCCCCCCCHHHHHHHHHH
Q 008945 193 GLLIDTSRHYQPL----PIIKNVIDSMAYAKL--NVLHWHIVDTQSFPL-EIPSYPKLWDGAYSTSERYTMADAAEIVSY 265 (548)
Q Consensus 193 G~mlD~aR~f~~~----~~lk~~Id~ma~~Kl--N~lh~HltDdq~frl-e~~~~P~L~~Ga~~~~~~YT~~di~elv~y 265 (548)
|+.+|++.-+..- +...++++.+...-. ...|+|+.|..+-.- ....+=.+ ..|...-+++...++-
T Consensus 175 g~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~~~~~~~~d~H~~~------G~G~id~~~~~~~L~~ 248 (281)
T PRK01060 175 GVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSKNEFGSRKDRHANL------GEGTIGFDALRYIVHD 248 (281)
T ss_pred EEEEeHHhHhhcCCChHHHHHHHHHHHHHhhChhheeEEEEecCCCcccCCCCcccCC------cCCcCCHHHHHHHHhC
Confidence 8999999655432 334477777765433 567777778643110 00001111 1233444444444443
Q ss_pred HHHcCCEEEEccCC
Q 008945 266 AQKRGINVLAELDV 279 (548)
Q Consensus 266 A~~rgI~VIPEID~ 279 (548)
..-.|+.++-|.-.
T Consensus 249 ~~y~g~~l~lE~~~ 262 (281)
T PRK01060 249 PRFDGIPKILETPY 262 (281)
T ss_pred cccCCCeEEEeCCC
Confidence 33347778888633
No 225
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.53 E-value=1.6e+02 Score=31.28 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEc
Q 008945 204 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAE 276 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPE 276 (548)
+.+.++++.+.+...+ |..|++|.--. ++....| ..-++++++++.++.+++||.|..-
T Consensus 266 s~e~a~~La~~l~~l~-~~~~VnLIPyn--p~~~~~~-----------~~ps~e~i~~f~~~L~~~gi~v~vR 324 (348)
T PRK14467 266 SPEDALRLAQLIGKNK-KKFKVNLIPFN--PDPELPY-----------ERPELERVYKFQKILWDNGISTFVR 324 (348)
T ss_pred CHHHHHHHHHHHhcCC-CceEEEEecCC--CCCCCCC-----------CCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 4677888888887643 23344432111 1111112 2347899999999999999998754
No 226
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=21.34 E-value=56 Score=26.06 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=16.0
Q ss_pred CCCCCChHHHHHHHHHHHH-cCCc
Q 008945 199 SRHYQPLPIIKNVIDSMAY-AKLN 221 (548)
Q Consensus 199 aR~f~~~~~lk~~Id~ma~-~KlN 221 (548)
.|||+|.-.+|++++.|.. |+++
T Consensus 1 qRH~LSkKe~k~~~~k~~~~ygId 24 (65)
T PF09183_consen 1 QRHFLSKKEIKEIKEKIKEKYGID 24 (65)
T ss_dssp --EE--HHHHHHHHHHHHT-TT--
T ss_pred CcccccHHHHHHHHHHHHHHhCcC
Confidence 4899999999999999998 7765
No 227
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=21.11 E-value=1.4e+02 Score=32.56 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=41.3
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEc
Q 008945 201 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAE 276 (548)
Q Consensus 201 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPE 276 (548)
+|..++.++++...... |+.-++ +|+|+-|.+ +--||.+|.+.|+.+||-||-.
T Consensus 145 ~~vd~~~~~~~~~~i~~---~t~~V~--------~ESPsNPll-----------~v~DI~~l~~la~~~g~~vvVD 198 (409)
T KOG0053|consen 145 DFVDVDDLKKILKAIKE---NTKAVF--------LESPSNPLL-----------KVPDIEKLARLAHKYGFLVVVD 198 (409)
T ss_pred eeechhhHHHHHHhhcc---CceEEE--------EECCCCCcc-----------ccccHHHHHHHHhhCCCEEEEe
Confidence 45666777776665555 777776 478887776 5569999999999999998864
No 228
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=20.89 E-value=7.2e+02 Score=27.19 Aligned_cols=113 Identities=11% Similarity=0.086 Sum_probs=68.1
Q ss_pred EEEEecCchhhHHHHHHHHHHHhhccCCCeEEeeccceEEecCCCCc-ccc--ceecCCCCCCChHHHHHHHHHHHHcCC
Q 008945 144 AHLEAQTVYGALHGLQTLSQLCQFNFSSRVIEILMTPWIINDQPRFS-FRG--LLIDTSRHYQPLPIIKNVIDSMAYAKL 220 (548)
Q Consensus 144 i~I~a~~~~G~~~gl~Tl~QL~~~~~~~~~~~~~~~~~~I~D~P~f~-~RG--~mlD~aR~f~~~~~lk~~Id~ma~~Kl 220 (548)
|-|-|.+..---+|-.-+.+|...+..+.-+.+....-+|..-|.|+ .+- --+|++==+.|.+...+.++.+...+.
T Consensus 10 iavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~~gv 89 (447)
T TIGR02717 10 VAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGEKGV 89 (447)
T ss_pred EEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHhcCC
Confidence 66666554433456667777776543222221211111355555553 111 136888788999999999999999998
Q ss_pred cEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 008945 221 NVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVL 274 (548)
Q Consensus 221 N~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VI 274 (548)
-.+.+. + .| |++.. .. ..+.-++|+++|+++||+|+
T Consensus 90 ~~~vi~-s--~g-------f~e~g-----~~---g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 90 KGAVVI-T--AG-------FKEVG-----EE---GAELEQELVEIARKYGMRLL 125 (447)
T ss_pred CEEEEE-C--CC-------ccccC-----cc---hHHHHHHHHHHHHHcCCEEE
Confidence 888774 2 23 34431 00 12234789999999999988
No 229
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=20.78 E-value=1.4e+02 Score=31.06 Aligned_cols=130 Identities=18% Similarity=0.196 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEEeeCCCccc-eecCCCCCCC--cCC---CCCCCCCCHHHHHHHHHHHHHcCCEEEEccCC
Q 008945 206 PIIKNVIDSMAYAKLNVLHWHIVDTQSFP-LEIPSYPKLW--DGA---YSTSERYTMADAAEIVSYAQKRGINVLAELDV 279 (548)
Q Consensus 206 ~~lk~~Id~ma~~KlN~lh~HltDdq~fr-le~~~~P~L~--~Ga---~~~~~~YT~~di~elv~yA~~rgI~VIPEID~ 279 (548)
+.=|++|+.|..++|=+=-=|++|...|. +++...|-+. .++ +....-+|.+++++|.+.-.--||..+|.+=.
T Consensus 154 ~~G~~vv~~mn~lGmiiDvSH~s~~~~~dv~~~s~~PviaSHsn~ral~~h~RNltD~~i~~ia~~GGvigi~~~~~fl~ 233 (309)
T cd01301 154 PFGKELVREMNRLGIIIDLSHLSERTFWDVLDISNAPVIASHSNARALCDHPRNLTDAQLKAIAETGGVIGVNFYPAFLS 233 (309)
T ss_pred HHHHHHHHHHHHcCCEEEcCCCCHHHHHHHHHhcCCCEEEeccChHHhcCCCCCCCHHHHHHHHHcCCEEEEeeeHHHhC
Confidence 55678888888877766666777765443 3333455443 111 22334489999998886555555555543310
Q ss_pred CchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhccCceeEecCCCCCCC-------CCCCCHHHHHHH
Q 008945 280 PGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTS-------CWTLTPHVSKWL 352 (548)
Q Consensus 280 PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~~~~iHiGgDEv~~~-------~w~~~p~~~~~~ 352 (548)
. ....+.+-+-+-++.+.++.....+=||+|=-... ....-|.+.+.|
T Consensus 234 ~-------------------------~~~~~~~~~~~hi~~i~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~~~l~~~L 288 (309)
T cd01301 234 P-------------------------GADATLDDVVRHIDYIVDLIGIDHVGLGSDFDGIGGTPGGLEDVSDLPNLTAEL 288 (309)
T ss_pred C-------------------------CCCCCHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCccccCCHHHHHHHHHHH
Confidence 0 00112233344556667777778889998821111 012234556666
Q ss_pred HHCCCChh
Q 008945 353 KEHSMNES 360 (548)
Q Consensus 353 ~~~g~~~~ 360 (548)
.+.|++..
T Consensus 289 ~~rG~s~~ 296 (309)
T cd01301 289 LERGYSEE 296 (309)
T ss_pred HHcCCCHH
Confidence 66676643
No 230
>COG5587 Uncharacterized conserved protein [Function unknown]
Probab=20.56 E-value=1.3e+02 Score=28.85 Aligned_cols=50 Identities=8% Similarity=0.261 Sum_probs=33.3
Q ss_pred CceeEecCCCCCC--CCCCCCHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHcCCe
Q 008945 327 YKFVHLGGDEVNT--SCWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYE 380 (548)
Q Consensus 327 ~~~iHiGgDEv~~--~~w~~~p~~~~~~~~~g~~~~~l~~~f~~~~~~~l~~~g~~ 380 (548)
+=|||||-||++. .-|.-...++..|++.=.+..+.+. .+.+-++++|.+
T Consensus 104 ~FYI~igl~gcfagvawWqP~~~ll~amR~aI~~~Pd~fr----amv~~lkkngl~ 155 (228)
T COG5587 104 SFYIQIGLDGCFAGVAWWQPASDLLRAMRQAIFDNPDSFR----AMVDPLKKNGLT 155 (228)
T ss_pred cEEEEecCCcceeeeeeeCcHHHHHHHHHHHHhcCcHHHH----HHHhHHHhCCce
Confidence 4599999999864 3477666777777765443334433 456667777765
No 231
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=20.52 E-value=4.7e+02 Score=25.49 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=74.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEeeCCCccc-e--ecCCCCC-CCcCCC--------------CCCCCCCHHHHHHHHHH
Q 008945 204 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFP-L--EIPSYPK-LWDGAY--------------STSERYTMADAAEIVSY 265 (548)
Q Consensus 204 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr-l--e~~~~P~-L~~Ga~--------------~~~~~YT~~di~elv~y 265 (548)
+.+.+.++++.+..-++..+.+-+++..+.. + -...||. +..|+- ..+...|...-.+++++
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~~~~v~~~ 99 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNTDPEVIRR 99 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCCCHHHHHH
Confidence 8899999999999999999999987765443 1 1235663 333321 01222344445588999
Q ss_pred HHHcCCEEEEccCCCchhhHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcc--CceeEecCC
Q 008945 266 AQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFK--YKFVHLGGD 335 (548)
Q Consensus 266 A~~rgI~VIPEID~PGH~~a~~~~~p~l~~~~~~~~~ld~~~~~t~~~l~~v~~E~~~lF~--~~~iHiGgD 335 (548)
++..|+-++|..-+|.........--++.. +=|+..-.. +.++++...|| -|.+=+||=
T Consensus 100 ~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk-------~Fpa~~~G~----~~l~~l~~~~~~~ipvvaiGGI 160 (206)
T PRK09140 100 AVALGMVVMPGVATPTEAFAALRAGAQALK-------LFPASQLGP----AGIKALRAVLPPDVPVFAVGGV 160 (206)
T ss_pred HHHCCCcEEcccCCHHHHHHHHHcCCCEEE-------ECCCCCCCH----HHHHHHHhhcCCCCeEEEECCC
Confidence 999999999999888776544321111100 111111122 23555666774 588888873
No 232
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=20.49 E-value=1.1e+02 Score=26.27 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=37.2
Q ss_pred CCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcC--CEEEE
Q 008945 200 RHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRG--INVLA 275 (548)
Q Consensus 200 R~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rg--I~VIP 275 (548)
....+.+.+.+.|+.++.......+++++-.+ |-| +...+++.++++++++++ +.|.-
T Consensus 26 ~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGE---------Pll---------~~~~~~l~~~i~~~~~~~~~~~i~i 85 (119)
T PF13394_consen 26 GEEMSIEELEEIIDELKEKGFRPSTVVFTGGE---------PLL---------YLNPEDLIELIEYLKERGPEIKIRI 85 (119)
T ss_dssp GGS--HHHHHHHHHHHHHTT----EEEEESSS---------GGG---------STTHHHHHHHHCTSTT-----EEEE
T ss_pred CCcccHhHHHHHHHHHHhcCCceEEEEEECCC---------Ccc---------ccCHHHHHHHHHHHHhhCCCceEEE
Confidence 45678999999999999988887778876432 332 135789999999999999 66653
No 233
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=20.49 E-value=3.1e+02 Score=25.90 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=36.2
Q ss_pred HHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEE---EccCCCchh
Q 008945 211 VIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVL---AELDVPGHA 283 (548)
Q Consensus 211 ~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VI---PEID~PGH~ 283 (548)
+++.++..+.+.+..|-.. +.+++.+++++++++|+.++ |.-++|-..
T Consensus 69 ~~~~~~~aGad~i~~h~~~-------------------------~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~ 119 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAA-------------------------PLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKR 119 (202)
T ss_pred HHHHHHhcCCCEEEEEeeC-------------------------CHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHH
Confidence 5688899999999999532 23578899999999999987 444444443
No 234
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=20.43 E-value=57 Score=32.03 Aligned_cols=30 Identities=17% Similarity=0.515 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEccCCCchh
Q 008945 254 YTMADAAEIVSYAQKRGINVLAELDVPGHA 283 (548)
Q Consensus 254 YT~~di~elv~yA~~rgI~VIPEID~PGH~ 283 (548)
+--.|+.+|.+.|++.|.+.+-.||||+.-
T Consensus 168 ~GiRD~e~v~~lA~~~GL~l~~~~~MPANN 197 (204)
T PF06080_consen 168 WGIRDIEDVEALAAAHGLELEEDIDMPANN 197 (204)
T ss_pred cCccCHHHHHHHHHHCCCccCcccccCCCC
Confidence 455689999999999999999999999864
No 235
>PRK13840 sucrose phosphorylase; Provisional
Probab=20.38 E-value=2.6e+02 Score=31.30 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=43.9
Q ss_pred ChHHHHHHHH-HHHHcCCcEEEEEeeCCCccceecCCC-CC-CCcCCCCCCC-------CCCHHHHHHHHHHHHHcCCEE
Q 008945 204 PLPIIKNVID-SMAYAKLNVLHWHIVDTQSFPLEIPSY-PK-LWDGAYSTSE-------RYTMADAAEIVSYAQKRGINV 273 (548)
Q Consensus 204 ~~~~lk~~Id-~ma~~KlN~lh~HltDdq~frle~~~~-P~-L~~Ga~~~~~-------~YT~~di~elv~yA~~rgI~V 273 (548)
++..|.+.+| .+... ++.+||=. -| |- ...+.|.... +=|-+|+++|++ ||+|
T Consensus 18 dL~gl~~kLd~yL~~l-v~~vhllP-----------ff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~-----gikl 80 (495)
T PRK13840 18 GLKSLTALLDGRLDGL-FGGVHILP-----------FFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGK-----THDI 80 (495)
T ss_pred CHhHHHHHHHHHHHHH-hCeEEECC-----------CccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHh-----CCeE
Confidence 6788899999 48888 99999841 12 11 1112222211 227899999985 9999
Q ss_pred EEccCCCchhhH
Q 008945 274 LAELDVPGHALS 285 (548)
Q Consensus 274 IPEID~PGH~~a 285 (548)
|-.+ ++-|++.
T Consensus 81 mlDl-V~NHtS~ 91 (495)
T PRK13840 81 MADL-IVNHMSA 91 (495)
T ss_pred EEEE-CCCcCCC
Confidence 9998 8999873
No 236
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=20.19 E-value=82 Score=34.19 Aligned_cols=29 Identities=24% Similarity=0.559 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCEE-------------EEccCCCchhhH
Q 008945 257 ADAAEIVSYAQKRGINV-------------LAELDVPGHALS 285 (548)
Q Consensus 257 ~di~elv~yA~~rgI~V-------------IPEID~PGH~~a 285 (548)
+-+.++.+.-++|||+| |--||+|||...
T Consensus 74 dtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 74 DTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred chHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 45677888889999988 556999999873
No 237
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=20.12 E-value=2.4e+02 Score=29.45 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=40.4
Q ss_pred CCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCC
Q 008945 200 RHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDV 279 (548)
Q Consensus 200 R~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P~L~~Ga~~~~~~YT~~di~elv~yA~~rgI~VIPEID~ 279 (548)
...++.++++++++.++..+...+ .++. ++.....|+.+|++++++++.-....|.|
T Consensus 42 ~~~ls~eei~~li~~~~~~Gv~~I--~~tG---------------------GEPllr~dl~~li~~i~~~~~l~~i~itT 98 (329)
T PRK13361 42 DQVLSLEELAWLAQAFTELGVRKI--RLTG---------------------GEPLVRRGCDQLVARLGKLPGLEELSLTT 98 (329)
T ss_pred cCCCCHHHHHHHHHHHHHCCCCEE--EEEC---------------------cCCCccccHHHHHHHHHhCCCCceEEEEe
Confidence 346899999999999988776544 4443 22334568999999999886411124445
Q ss_pred Cch
Q 008945 280 PGH 282 (548)
Q Consensus 280 PGH 282 (548)
=|.
T Consensus 99 NG~ 101 (329)
T PRK13361 99 NGS 101 (329)
T ss_pred Chh
Confidence 554
No 238
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=20.09 E-value=1.8e+02 Score=28.69 Aligned_cols=79 Identities=23% Similarity=0.257 Sum_probs=43.5
Q ss_pred cccceecCCCCCCChHHHHHHHHHHHHcCCcEEEEEeeCCCccceecCCCC--CCCcCCCCCCCCCCHHHHHHHHHHHHH
Q 008945 191 FRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYP--KLWDGAYSTSERYTMADAAEIVSYAQK 268 (548)
Q Consensus 191 ~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~frle~~~~P--~L~~Ga~~~~~~YT~~di~elv~yA~~ 268 (548)
.=|+++|++.-|+.-....+.|+.+.. -..|+|+.|..+-+...-..+ .+..| .+ .=|++++++..++
T Consensus 171 ~v~~~lD~~H~~~~~~d~~~~~~~~~~---rI~hvH~kD~~~~~~~~~~~~~~~~~pG----~G---~id~~~i~~~L~~ 240 (274)
T COG1082 171 NVGLLLDTGHAFFAGEDPLEAIRKLGD---RIGHVHLKDADGPTLDIVNFLGQHLPPG----DG---DIDFKAIFSALRE 240 (274)
T ss_pred ceEEEEecCchhhccCCHHHHHHHhhc---ceeEEEEeecCcchhcccCCCcceeCCC----CC---CcCHHHHHHHHHH
Confidence 358999999766652223333333333 678888888764322200000 11111 11 1258888888888
Q ss_pred cCCE--EEEccCC
Q 008945 269 RGIN--VLAELDV 279 (548)
Q Consensus 269 rgI~--VIPEID~ 279 (548)
.|.+ ++-|+..
T Consensus 241 ~gy~g~~~iE~~~ 253 (274)
T COG1082 241 AGYDGWLVVEVFA 253 (274)
T ss_pred cCCCceEEEEecC
Confidence 8886 5666544
No 239
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=20.08 E-value=1.3e+02 Score=33.12 Aligned_cols=42 Identities=10% Similarity=-0.040 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEccCCCchhhHHHhhCCCC
Q 008945 252 ERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSL 293 (548)
Q Consensus 252 ~~YT~~di~elv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l 293 (548)
..++++++++|+++|++.|++++-|+...-.....+..-+.+
T Consensus 141 ~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~i 182 (454)
T PRK09427 141 SVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKV 182 (454)
T ss_pred HhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCE
Confidence 357899999999999999999999996666665555544443
Done!