BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008946
(548 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 339 bits (870), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 213/535 (39%), Positives = 310/535 (57%), Gaps = 26/535 (4%)
Query: 19 IFYSKRKPVSLPPNESLDVTTFISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLS 78
IF SK + +P N L + H + I+ A G T++++ V++ L+
Sbjct: 8 IFRSKLPDIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLN 67
Query: 79 DMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFT 138
+GI++G VI+L P+S F + L GAIIT NP +T E+AK S+ L T
Sbjct: 68 KIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLIT 127
Query: 139 ISQLVPKLAG----STLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRINQDD 194
+ K+ S + ++ +D ++ +G + L Q E I+ DD
Sbjct: 128 QACYYEKVKDFARESDVKVMCVD----SAPDGCLHFSELTQADENEAPQV----DISPDD 179
Query: 195 VATLLYSSGTTGASKGVVSSHRNLIAMV-QTVLGR-----FKLEDGEQTFICTVPMFHIY 248
V L YSSGTTG KGV+ +H+ LI V Q V G F ED +C +PMFHIY
Sbjct: 180 VVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSED---VILCVLPMFHIY 236
Query: 249 GLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKY 308
L + L G+ I+++ KF++ +L I KY+ + D K+
Sbjct: 237 ALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--LDKH 294
Query: 309 DLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESR---KY 365
DLSSL+ + SGGAPL +E+ + K+P+ R+ QGYG+TE+ + A + + K
Sbjct: 295 DLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKP 354
Query: 366 GTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLR 425
G G + + E KIVDP++G +L NQ GE+ ++G IMKGY ++PEAT+ T+D EGWL
Sbjct: 355 GACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLH 414
Query: 426 TGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQ 485
TGD+ YIDDD +FIVDRLKELIKYKG+QV PAELEALL+ HP+ISDAAVV D++AG+
Sbjct: 415 TGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGE 474
Query: 486 YPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 540
P+A+VV+ S+ +E+E+ ++++QV YKR++RV F+ +IPK PSGKILRK+L
Sbjct: 475 VPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNL 529
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 215/548 (39%), Positives = 305/548 (55%), Gaps = 20/548 (3%)
Query: 7 IDSRSGFCKSNSIFYSKRKPVSLPPNESLDVTTFISSRAHHGRTAFIDAATGRHLTFSEL 66
++ +S S+ IF SK + +P + SL F + + I+ TG T+S++
Sbjct: 35 MEKQSNNNNSDVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDV 94
Query: 67 WRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLNTKQEIAK 126
++ +G+ + V++LL PN F + LA GA T NP T EIAK
Sbjct: 95 HVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAK 154
Query: 127 QIADSKPVLAFTISQLVPKLA----GSTLPIVLLDDEKTTST-EGIKTVTTLPQMMRKEP 181
Q S L T ++ V K+ + IV +DD ++ EG T L Q E
Sbjct: 155 QAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQST-TEA 213
Query: 182 SGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMV-QTVLGR-----FKLEDGE 235
S + I+ DDV L YSSGTTG KGV+ +H+ L+ V Q V G F +D
Sbjct: 214 SEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDD-- 271
Query: 236 QTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYXXXXXXXXX 295
+C +PMFHIY L + L G+ I+++ KF+++ +L I + + T
Sbjct: 272 -VILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVL 330
Query: 296 XXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGAS 355
++ KYDLSS++ V SG APL +E+ + K+P ++ QGYG+TE+ + A
Sbjct: 331 AIAKSSET--EKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAM 388
Query: 356 TDSLEESR---KYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPE 412
+ + K G G + + E KIVDPD+G +L NQ GE+ ++G IMKGY +NP
Sbjct: 389 SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPA 448
Query: 413 ATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISD 472
AT T+D +GWL TGD+ IDDD +FIVDRLKELIKYKG+QV PAELEALL+ HP I+D
Sbjct: 449 ATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITD 508
Query: 473 AAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPS 532
AVV ++ AG+ P+A+VV+ S LSE++V FV++QV YKR+ +V F SIPK PS
Sbjct: 509 VAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPS 568
Query: 533 GKILRKDL 540
GKILRKDL
Sbjct: 569 GKILRKDL 576
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 299 bits (766), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 204/524 (38%), Positives = 282/524 (53%), Gaps = 36/524 (6%)
Query: 48 GRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSI-FFPVVCLAVM 106
G AF DA ++T+SE + ++ + G+ H I + S NS+ FF VC A+
Sbjct: 72 GTIAFTDAHAEVNITYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALF 131
Query: 107 SLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG--STLPI----VLLDDEK 160
+G + TN + ++E+ ++ S+P + F + + K+ G LPI V+LD
Sbjct: 132 -IGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILD--- 187
Query: 161 TTSTEGIKTVTTLPQMMRKE-PSGTLVRDRI-----NQDDVATLLYSSGTTGASKGVVSS 214
S E ++ + P+G D I + A ++ SSG+TG KGV +
Sbjct: 188 --SREDYMGKQSMYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVELT 245
Query: 215 HRNLIAMV----QTVLGRFKLEDGEQTFICTVPMFHIYGLAAFAT-GLLASGSTIVVLSK 269
H+N+ V G + D T I TV FH +G F T G L G IV++ +
Sbjct: 246 HKNICVRFSHCRDPVFGNQIIPD---TAILTVIPFH-HGFGMFTTLGYLTCGFRIVLMYR 301
Query: 270 FDMHEMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIE 329
F+ L S+ Y+ + KYDLS+L + SGGAPL++EV E
Sbjct: 302 FEEELFLRSLQDYKIQ--SALLVPTLFSFFAKSTLVDKYDLSNLHEIASGGAPLAKEVGE 359
Query: 330 GFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALL 389
+++ I QGYGLTE+T T + K G G + P AKIVD D+GK L
Sbjct: 360 AVAKRFKLPGIRQGYGLTETTSAIIITPRGRDD-KPGACGKVVPFFSAKIVDLDTGKTLG 418
Query: 390 VNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIK 449
VNQ GEL +KGP IMKGY +NPEAT++ +D +GWL +GD+ Y D DG+ FIVDRLK LIK
Sbjct: 419 VNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIK 478
Query: 450 YKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVA 509
YKGYQVPPAELE++LL HP I DA V PD +AG+ P A VV E G ++E EVMD+VA
Sbjct: 479 YKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVA 538
Query: 510 RQVAPYKRVR-RVAFVASIPKNPSGKI----LRKDLIKLATSKL 548
QV KR+R V FV +PK +GKI +R+ L+ SKL
Sbjct: 539 GQVTASKRLRGGVKFVDEVPKGLTGKIDARKIREILMMGKKSKL 582
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 292 bits (748), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 195/519 (37%), Positives = 278/519 (53%), Gaps = 41/519 (7%)
Query: 40 FISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFP 99
++ A G AF +A TG +++E + L + G+ I L S N F
Sbjct: 32 YMERYAKLGAIAFTNAVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFF 91
Query: 100 VVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQ------LVPKLAGSTLPI 153
+ +A + +G + TN + T +E+ + SKP + F+ + V K + I
Sbjct: 92 IPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTI 151
Query: 154 VLLDDEKTTSTEGIKTVTTLPQMMRKEPSG-------TLVRDRINQDDVATLLYSSGTTG 206
V+LD + G + + T + R P G T+ DR ++ VA ++ SSG+TG
Sbjct: 152 VILDSK--VDYRGYQCLDTF--IKRNTPPGFQASSFKTVEVDR--KEQVALIMNSSGSTG 205
Query: 207 ASKGVVSSHRNLIAMVQTVLGRFKLED----GEQ----TFICTVPMFHIYGLAAFAT-GL 257
KGV +H N++ RF G Q T + TV FH +G F T G
Sbjct: 206 LPKGVQLTHENIVT-------RFSHARDPIYGNQVSPGTAVLTVVPFH-HGFGMFTTLGY 257
Query: 258 LASGSTIVVLSKFDMHEMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVL 317
L G +V+L+KFD L ++ Y+ T ++ +KYDLS+L +
Sbjct: 258 LICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNK--SELLNKYDLSNLVEIA 315
Query: 318 SGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEA 377
SGGAPLS+EV E +++ + QGYGLTE+T A + E K G +G + P +A
Sbjct: 316 SGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTS--AIIITPEGDDKPGASGKVVPLFKA 373
Query: 378 KIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGF 437
K++D D+ K+L N+ GE+ +KGP +MKGY +NPEAT +D EGWL TGD+ Y D++
Sbjct: 374 KVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKH 433
Query: 438 IFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGS 497
FIVDRLK LIKYKGYQVPPAELE++LL HP I DA V PD AG+ P A VV E+G
Sbjct: 434 FFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK 493
Query: 498 RLSENEVMDFVARQVAPYKRVR-RVAFVASIPKNPSGKI 535
++E EVMD+VA QV+ KR+R V FV +PK +GKI
Sbjct: 494 NMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKI 532
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 292 bits (747), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 195/519 (37%), Positives = 278/519 (53%), Gaps = 41/519 (7%)
Query: 40 FISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFP 99
++ A G AF +A TG +++E + L + G+ I L S N F
Sbjct: 32 YMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFF 91
Query: 100 VVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQ------LVPKLAGSTLPI 153
+ +A + +G + TN + T +E+ + SKP + F+ + V K + I
Sbjct: 92 IPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTI 151
Query: 154 VLLDDEKTTSTEGIKTVTTLPQMMRKEPSG-------TLVRDRINQDDVATLLYSSGTTG 206
V+LD + G + + T + R P G T+ DR ++ VA ++ SSG+TG
Sbjct: 152 VILDSK--VDYRGYQCLDTF--IKRNTPPGYQASSFKTVEVDR--KEQVALIMNSSGSTG 205
Query: 207 ASKGVVSSHRNLIAMVQTVLGRFKLED----GEQ----TFICTVPMFHIYGLAAFAT-GL 257
KGV +H N++ RF G Q T + TV FH +G F T G
Sbjct: 206 LPKGVQLTHENIVT-------RFSHARDPIYGNQVSPGTAVLTVVPFH-HGFGMFTTLGY 257
Query: 258 LASGSTIVVLSKFDMHEMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVL 317
L G +V+L+KFD L ++ Y+ T ++ +KYDLS+L +
Sbjct: 258 LICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNK--SELLNKYDLSNLVEIA 315
Query: 318 SGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEA 377
SGGAPLS+EV E +++ + QGYGLTE+T A + E K G +G + P +A
Sbjct: 316 SGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTS--AIIITPEGDDKPGASGKVVPLFKA 373
Query: 378 KIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGF 437
K++D D+ K+L N+ GE+ +KGP +MKGY +NPEAT +D EGWL TGD+ Y D++
Sbjct: 374 KVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKH 433
Query: 438 IFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGS 497
FIVDRLK LIKYKGYQVPPAELE++LL HP I DA V PD AG+ P A VV E+G
Sbjct: 434 FFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK 493
Query: 498 RLSENEVMDFVARQVAPYKRVR-RVAFVASIPKNPSGKI 535
++E EVMD+VA QV+ KR+R V FV +PK +GKI
Sbjct: 494 NMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKI 532
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 291 bits (746), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 195/519 (37%), Positives = 278/519 (53%), Gaps = 41/519 (7%)
Query: 40 FISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFP 99
++ A G AF +A TG +++E + L + G+ I L S N F
Sbjct: 32 YMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFF 91
Query: 100 VVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQ------LVPKLAGSTLPI 153
+ +A + +G + TN + T +E+ + SKP + F+ + V K + I
Sbjct: 92 IPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTI 151
Query: 154 VLLDDEKTTSTEGIKTVTTLPQMMRKEPSG-------TLVRDRINQDDVATLLYSSGTTG 206
V+LD + G + + T + R P G T+ DR ++ VA ++ SSG+TG
Sbjct: 152 VILDSK--VDYRGYQCLDTF--IKRNTPPGFQASSFKTVEVDR--KEQVALIMNSSGSTG 205
Query: 207 ASKGVVSSHRNLIAMVQTVLGRFKLED----GEQ----TFICTVPMFHIYGLAAFAT-GL 257
KGV +H N++ RF G Q T + TV FH +G F T G
Sbjct: 206 LPKGVQLTHENIVT-------RFSHARDPIYGNQVSPGTAVLTVVPFH-HGFGMFTTLGY 257
Query: 258 LASGSTIVVLSKFDMHEMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVL 317
L G +V+L+KFD L ++ Y+ T ++ +KYDLS+L +
Sbjct: 258 LICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNK--SELLNKYDLSNLVEIA 315
Query: 318 SGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEA 377
SGGAPLS+EV E +++ + QGYGLTE+T A + E K G +G + P +A
Sbjct: 316 SGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTS--AIIITPEGDDKPGASGKVVPLFKA 373
Query: 378 KIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGF 437
K++D D+ K+L N+ GE+ +KGP +MKGY +NPEAT +D EGWL TGD+ Y D++
Sbjct: 374 KVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKH 433
Query: 438 IFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGS 497
FIVDRLK LIKYKGYQVPPAELE++LL HP I DA V PD AG+ P A VV E+G
Sbjct: 434 FFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK 493
Query: 498 RLSENEVMDFVARQVAPYKRVR-RVAFVASIPKNPSGKI 535
++E EVMD+VA QV+ KR+R V FV +PK +GKI
Sbjct: 494 NMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKI 532
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 289 bits (739), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 190/514 (36%), Positives = 279/514 (54%), Gaps = 29/514 (5%)
Query: 48 GRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMS 107
G AF DA ++T++E + ++ + G+ H I++ S NS+ F + L +
Sbjct: 38 GTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 97
Query: 108 LGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG--STLPIV---LLDDEKTT 162
+G + N + ++E+ + S+P + F + + K+ LPI+ ++ D KT
Sbjct: 98 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT- 156
Query: 163 STEGIKTVTTLPQMMRKEPSG----TLVRDRINQDD-VATLLYSSGTTGASKGVVSSHRN 217
+G +++ T + P G V + ++D +A ++ SSG+TG KGV HR
Sbjct: 157 DYQGFQSMYTF--VTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRT 214
Query: 218 LIAMVQTVLGR---FKLEDGEQTFICTVPMFHIYGLAAFAT-GLLASGSTIVVLSKFDMH 273
A V+ R F + T I +V FH +G F T G L G +V++ +F+
Sbjct: 215 --ACVRFSHARDPIFGNQIIPDTAILSVVPFH-HGFGMFTTLGYLICGFRVVLMYRFEEE 271
Query: 274 EMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQ 333
L S+ Y+ + KYDLS+L + SGGAPLS+EV E +
Sbjct: 272 LFLRSLQDYKIQ--SALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 329
Query: 334 KYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQT 393
++ I QGYGLTE+T A + E K G G + P EAK+VD D+GK L VNQ
Sbjct: 330 RFHLPGIRQGYGLTETTS--AILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR 387
Query: 394 GELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGY 453
GEL ++GP IM GY +NPEAT + +D +GWL +GD+ Y D+D FIVDRLK LIKYKGY
Sbjct: 388 GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGY 447
Query: 454 QVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVA 513
QV PAELE++LL HP I DA V PD +AG+ P A VV E G ++E E++D+VA QV
Sbjct: 448 QVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVT 507
Query: 514 PYKRVR-RVAFVASIPKNPSGKI----LRKDLIK 542
K++R V FV +PK +GK+ +R+ LIK
Sbjct: 508 TAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 541
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 289 bits (739), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 190/514 (36%), Positives = 279/514 (54%), Gaps = 29/514 (5%)
Query: 48 GRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMS 107
G AF DA ++T++E + ++ + G+ H I++ S NS+ F + L +
Sbjct: 43 GTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 102
Query: 108 LGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG--STLPIV---LLDDEKTT 162
+G + N + ++E+ + S+P + F + + K+ LPI+ ++ D KT
Sbjct: 103 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT- 161
Query: 163 STEGIKTVTTLPQMMRKEPSG----TLVRDRINQDD-VATLLYSSGTTGASKGVVSSHRN 217
+G +++ T + P G V + ++D +A ++ SSG+TG KGV HR
Sbjct: 162 DYQGFQSMYTF--VTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRT 219
Query: 218 LIAMVQTVLGR---FKLEDGEQTFICTVPMFHIYGLAAFAT-GLLASGSTIVVLSKFDMH 273
A V+ R F + T I +V FH +G F T G L G +V++ +F+
Sbjct: 220 --ACVRFSHARDPIFGNQIIPDTAILSVVPFH-HGFGMFTTLGYLICGFRVVLMYRFEEE 276
Query: 274 EMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQ 333
L S+ Y+ + KYDLS+L + SGGAPLS+EV E +
Sbjct: 277 LFLRSLQDYKIQ--SALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 334
Query: 334 KYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQT 393
++ I QGYGLTE+T A + E K G G + P EAK+VD D+GK L VNQ
Sbjct: 335 RFHLPGIRQGYGLTETTS--AILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR 392
Query: 394 GELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGY 453
GEL ++GP IM GY +NPEAT + +D +GWL +GD+ Y D+D FIVDRLK LIKYKGY
Sbjct: 393 GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGY 452
Query: 454 QVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVA 513
QV PAELE++LL HP I DA V PD +AG+ P A VV E G ++E E++D+VA QV
Sbjct: 453 QVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVT 512
Query: 514 PYKRVR-RVAFVASIPKNPSGKI----LRKDLIK 542
K++R V FV +PK +GK+ +R+ LIK
Sbjct: 513 TAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 546
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 288 bits (738), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 190/514 (36%), Positives = 279/514 (54%), Gaps = 29/514 (5%)
Query: 48 GRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMS 107
G AF DA ++T++E + ++ + G+ H I++ S NS+ F + L +
Sbjct: 38 GTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 97
Query: 108 LGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG--STLPIV---LLDDEKTT 162
+G + N + ++E+ + S+P + F + + K+ LPI+ ++ D KT
Sbjct: 98 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT- 156
Query: 163 STEGIKTVTTLPQMMRKEPSG----TLVRDRINQDD-VATLLYSSGTTGASKGVVSSHRN 217
+G +++ T + P G V + ++D +A ++ SSG+TG KGV HR
Sbjct: 157 DYQGFQSMYTF--VTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRT 214
Query: 218 LIAMVQTVLGR---FKLEDGEQTFICTVPMFHIYGLAAFAT-GLLASGSTIVVLSKFDMH 273
A V+ R F + T I +V FH +G F T G L G +V++ +F+
Sbjct: 215 --ACVRFSHARDPIFGNQIIPDTAILSVVPFH-HGFGMFTTLGYLICGFRVVLMYRFEEE 271
Query: 274 EMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQ 333
L S+ Y+ + KYDLS+L + SGGAPLS+EV E +
Sbjct: 272 LFLRSLQDYKIQ--SALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 329
Query: 334 KYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQT 393
++ I QGYGLTE+T A + E K G G + P EAK+VD D+GK L VNQ
Sbjct: 330 RFHLPGIRQGYGLTETTS--AILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR 387
Query: 394 GELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGY 453
GEL ++GP IM GY +NPEAT + +D +GWL +GD+ Y D+D FIVDRLK LIKYKGY
Sbjct: 388 GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGY 447
Query: 454 QVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVA 513
QV PAELE++LL HP I DA V PD +AG+ P A VV E G ++E E++D+VA QV
Sbjct: 448 QVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVT 507
Query: 514 PYKRVR-RVAFVASIPKNPSGKI----LRKDLIK 542
K++R V FV +PK +GK+ +R+ LIK
Sbjct: 508 TAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 541
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 189/514 (36%), Positives = 278/514 (54%), Gaps = 29/514 (5%)
Query: 48 GRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMS 107
G AF DA ++T++E + ++ + G+ H I++ S NS+ F + L +
Sbjct: 43 GTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALF 102
Query: 108 LGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG--STLPIV---LLDDEKTT 162
+G + N ++E+ + S+P + F + + K+ LPI+ ++ D KT
Sbjct: 103 IGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT- 161
Query: 163 STEGIKTVTTLPQMMRKEPSG----TLVRDRINQDD-VATLLYSSGTTGASKGVVSSHRN 217
+G +++ T + P G V + ++D +A ++ SSG+TG KGV HR
Sbjct: 162 DYQGFQSMYTF--VTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRA 219
Query: 218 LIAMVQTVLGR---FKLEDGEQTFICTVPMFHIYGLAAFAT-GLLASGSTIVVLSKFDMH 273
L V+ R F + T I +V FH +G F T G L SG +V++ +F+
Sbjct: 220 L--AVRFSHARDPIFGNQIAPDTAILSVVPFH-HGFGMFTTLGYLISGFRVVLMYRFEEE 276
Query: 274 EMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQ 333
L S+ Y+ + KYDLS+L + SGGAPLS+EV E +
Sbjct: 277 LFLRSLQDYKIQSALLVPTLFSFLAKST--LIDKYDLSNLHEIASGGAPLSKEVGEAVAK 334
Query: 334 KYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQT 393
++ I QGYGLTE+T T ++ K G G + P EAK+VD D+GK L VNQ
Sbjct: 335 RFHLPGIRQGYGLTETTSAILITPKGDD--KPGAVGKVVPFFEAKVVDLDTGKTLGVNQR 392
Query: 394 GELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGY 453
GEL ++GP IM GY +NPEAT + +D +GWL +GD+ Y D+D FIVDRLK LIKYKG
Sbjct: 393 GELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGC 452
Query: 454 QVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVA 513
QV PAELE++LL HP I DA V PD +AG+ P A VV E G ++E E++D+VA QV
Sbjct: 453 QVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVT 512
Query: 514 PYKRVR-RVAFVASIPKNPSGKI----LRKDLIK 542
K++R V FV +PK +GK+ +R+ LIK
Sbjct: 513 TAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 546
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 194 bits (494), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 140/499 (28%), Positives = 255/499 (51%), Gaps = 40/499 (8%)
Query: 51 AFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGA 110
A+++ +T +T++++ + + L+ +GI KG + LL PNS+ F + LGA
Sbjct: 34 AYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGA 93
Query: 111 IITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTV 170
+ P+NT+ + P ++F +S K+ P + D + TV
Sbjct: 94 VAV---PINTRL--------AAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTV 142
Query: 171 T------TLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNL----IA 220
T +L + +R + + DD ++Y+SGTTG KGVV +H ++ +
Sbjct: 143 TDWIGADSLAERLRSAAADEPAVE-CGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASS 201
Query: 221 MVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLAS--GSTIVVLSKFDMHEMLSS 278
T+ R++ + +PMFH+ AA T + ++ G T++ + +FD ++ S
Sbjct: 202 WASTIDVRYR-----DRLLLPLPMFHV---AALTTVIFSAMRGVTLISMPQFDATKVWSL 253
Query: 279 ISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKV 338
I + R + ++ D + ++GGAP+ +I+ + K +
Sbjct: 254 IVEERVCIGGAVPAILNFMRQVPE--FAELDAPDFRYFITGGAPMPEALIKIYAAK--NI 309
Query: 339 RILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWL 398
++QGY LTES G G S + RK G+AG + + + D + + GE+ +
Sbjct: 310 EVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDG--VIREHGEGEVVI 367
Query: 399 KGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPA 458
K ++K Y++ PEAT D+ GW RTGD+ IDD+G+++I DRLK++I G V PA
Sbjct: 368 KSDILLKEYWNRPEATRDAFDN-GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPA 426
Query: 459 ELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRV 518
E+E++++ P +S+ AV+ PD++ G+ A VV + + +SE +++++ ++A YK
Sbjct: 427 EIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQ-NEVSEQQIVEYCGTRLARYKLP 485
Query: 519 RRVAFVASIPKNPSGKILR 537
++V F +IP+NP+GKIL+
Sbjct: 486 KKVIFAEAIPRNPTGKILK 504
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 146/508 (28%), Positives = 239/508 (47%), Gaps = 54/508 (10%)
Query: 62 TFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLNTK 121
F E+ +++ +S G+RKG + + PNSI + A+ + A NP
Sbjct: 54 NFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKS 113
Query: 122 QEIAKQIADS---------------KPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEG 166
E+ + DS KPVL T + V + G + + D + +E
Sbjct: 114 FELEHILNDSEATTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEVXD---SGSED 170
Query: 167 IKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVL 226
+ V P+ +DVA + Y+ GTTG KGV +H NL A +
Sbjct: 171 FENVKVNPE-----------------EDVALIPYTGGTTGXPKGVXLTHFNLAANALQLA 213
Query: 227 GRFKLEDGEQTFICTVPMFHI--YGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRA 284
L + T + P FH +GL + G+ VV F+ + +I KY+
Sbjct: 214 VATGLSHXD-TIVGCXPXFHSAEFGLVNLXVTV---GNEYVVXGXFNQEXLAENIEKYKG 269
Query: 285 TYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQ------KYPKV 338
T+ + + YD S L+ +G P++ ++E ++ P++
Sbjct: 270 TFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRL 329
Query: 339 RILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWL 398
R Q +G TE+ + L K T G+ +E K++ + G+ L V ++GE+ +
Sbjct: 330 RHNQIWGXTEACPXVTTNPPLRLD-KSTTQGVPXSDIELKVISLEDGRELGVGESGEIVI 388
Query: 399 KGPSIMKGYF----SNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQ 454
+GP+I KGY+ N E + RTGD+ +ID++GF+ DR+KE+IKYKGY
Sbjct: 389 RGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYT 448
Query: 455 VPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVV--REAGSRLSENEVMDFVARQV 512
+ P ELEALL H + D AV+ PD+EAG+ P A++V E ++ E +++++V ++
Sbjct: 449 IAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERI 508
Query: 513 APYKRVRRVAFVASIPKNPSGKILRKDL 540
+ YKRVR V FV +P+ SGK+LR+ L
Sbjct: 509 SGYKRVREVEFVEELPRTASGKLLRRLL 536
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 138/489 (28%), Positives = 229/489 (46%), Gaps = 16/489 (3%)
Query: 53 IDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAII 112
I+ A G ++++EL V+ L G++ G + + S+ V+ LA + G +
Sbjct: 21 IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80
Query: 113 TTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTT 172
N T E+ I D++P + +A + T T G +
Sbjct: 81 LPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-----GATVETLGPDGRGS 135
Query: 173 LPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLE 232
L DR DD+A +LY+SGTTG SKG SH NL + T++ ++
Sbjct: 136 LTDAAAGASEAFATIDR-GADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFT 194
Query: 233 DGEQTFICTVPMFHIYGL-AAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYXXXXX 291
+ I +P++H +GL A L A GS I L KFD ++L + RAT
Sbjct: 195 P-DDVLIHALPIYHTHGLFVASNVTLFARGSXIF-LPKFDPDKILDLXA--RATVLXGVP 250
Query: 292 XXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTG 351
+K + +SG APL + + K +L+ YG TE+
Sbjct: 251 TFYTRLLQSPRL--TKETTGHXRLFISGSAPLLADTHREWSAKTGHA-VLERYGXTETNX 307
Query: 352 IGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNP 411
+++ + R G G P + A++ DP++GK L G + +KGP++ KGY+ P
Sbjct: 308 --NTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXP 365
Query: 412 EATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKIS 471
E T S +G+ TGDL ID+ G++ I+ R K+L+ G+ V P E+E+ + P +
Sbjct: 366 EKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVV 425
Query: 472 DAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNP 531
++AV+ P + G+ A VVR+ G+ + E +V+ + Q+A +K ++V FV +P+N
Sbjct: 426 ESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKXPKKVIFVDDLPRNT 485
Query: 532 SGKILRKDL 540
GK+ + L
Sbjct: 486 XGKVQKNVL 494
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 144/509 (28%), Positives = 235/509 (46%), Gaps = 57/509 (11%)
Query: 62 TFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLNTK 121
T++E+++ + L +G+ G + L N AV +GA++ T NP +
Sbjct: 49 TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSP 108
Query: 122 QEIAKQIADSK-PVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKE 180
+EIA + ++ VL F P L LP+V + E +KTV M K
Sbjct: 109 KEIAYILNHAEDKVLLFD-----PNL----LPLV-----EAIRGE-LKTVQHFVVMDEKA 153
Query: 181 PSGTLVRD----------RINQDDVATLLYSSGTTGASKGVVSSHRNLI--AMVQTVLGR 228
P G L + R+ + + Y++GTTG KGVV SHR L+ ++ +++
Sbjct: 154 PEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDG 213
Query: 229 FKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYXX 288
L + + + VPMFH+ L ++ + D ++ T+
Sbjct: 214 TALSE-KDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTA 272
Query: 289 XXXXXXXXXXSGADQIRSK-YDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLT 347
AD + S + L +L+ ++ GG+ R +I F + +VR QGYGLT
Sbjct: 273 GVPTVWLAL---ADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVR--QGYGLT 327
Query: 348 ESTGI------GASTDSLEESRKY---GTAGMLSPSMEAKIVD------PDSGKALLVNQ 392
E++ + + +SL E K G+ P + ++ D P GKAL
Sbjct: 328 ETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKAL---- 383
Query: 393 TGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKG 452
GE+ LKGP I GY+ N EAT S L +G+ RTGD+ D++G++ I DRLK+LIK G
Sbjct: 384 -GEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGG 442
Query: 453 YQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQ- 511
+ +LE L+ HPK+ +AAVV P + + P+A VV G + + E+ + + +
Sbjct: 443 EWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPTPEELNEHLLKAG 501
Query: 512 VAPYKRVRRVAFVASIPKNPSGKILRKDL 540
A ++ F IP+ +GK L++ L
Sbjct: 502 FAKWQLPDAYVFAEEIPRTSAGKFLKRAL 530
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 112/384 (29%), Positives = 195/384 (50%), Gaps = 27/384 (7%)
Query: 163 STEGIKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAM- 221
+T GI+ T+ ++ KE ++ N DD+A+++++SGTTG K V + RN A
Sbjct: 133 NTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASA 192
Query: 222 --VQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSI 279
+ LG D + ++ +P++HI GL+ ++ G T+ ++ KF+ ++L+ I
Sbjct: 193 IGCKESLGF----DRDTNWLSVLPIYHISGLSVLLRAVI-EGFTVRIVDKFNAEQILTMI 247
Query: 280 SKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVR 339
R T+ + ++ +LQ +L GGA LS +IE +Q +
Sbjct: 248 KNERITHISLVPQTLNWLMQ-----QGLHEPYNLQKILLGGAKLSATMIETALQY--NLP 300
Query: 340 ILQGYGLTES-TGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWL 398
I +G+TE+ + +T + +R T GM S +++ KI +P+ GEL +
Sbjct: 301 IYNSFGMTETCSQFLTATPEMLHARP-DTVGMPSANVDVKIKNPNK------EGHGELMI 353
Query: 399 KGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPA 458
KG ++M GY P T T ++ G+ TGD+ ID +G++ I DR K+LI G + P
Sbjct: 354 KGANVMNGYLY-PTDLTGTFEN-GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPY 411
Query: 459 ELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRV 518
++E + P ISDA V PD GQ P Y V E S +S+ +++ ++++ +A YK
Sbjct: 412 QIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKAQLIAYLSKHLAKYKVP 469
Query: 519 RRVAFVASIPKNPSGKILRKDLIK 542
+ V ++P +GK+ R L +
Sbjct: 470 KHFEKVDTLPYTSTGKLQRNKLYR 493
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/432 (28%), Positives = 209/432 (48%), Gaps = 35/432 (8%)
Query: 116 NPLNTKQEIAKQIADSKP--VLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTL 173
NP + +E+A ++DS P VLA ++L P L L V +D ++ +
Sbjct: 99 NPKSGDKELAHILSDSAPSLVLAPPDAELPPAL--GALERVDVD---------VRARGAV 147
Query: 174 PQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLED 233
P+ D + D A ++Y+SGTTG KG V R L + + ++
Sbjct: 148 PE------------DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWT- 194
Query: 234 GEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRAT-YXXXXXX 292
GE + +P+FH++GL G L G ++ L +F ++ +
Sbjct: 195 GEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMY 254
Query: 293 XXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGI 352
AD +K L+ + ++SG A L E + R+++ YG+TE+ +
Sbjct: 255 HRIAETLPADPELAKA-LAGARLLVSGSAALPVHDHERIAAATGR-RVIERYGMTETL-M 311
Query: 353 GASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGK--ALLVNQTGELWLKGPSIMKGYFSN 410
S + E R GT G+ P +E ++V+ D AL GE+ ++GP++ Y +
Sbjct: 312 NTSVRADGEPRA-GTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNR 370
Query: 411 PEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDR-LKELIKYKGYQVPPAELEALLLTHPK 469
P+AT + +G+ RTGD+ D DG++ IV R +LIK GY++ E+E LL HP+
Sbjct: 371 PDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPE 430
Query: 470 ISDAAVVPFPDKEAGQYPMAYVVREAGSRLSE-NEVMDFVARQVAPYKRVRRVAFVASIP 528
+ +AAV PD + G+ +A++V + + D VA ++AP+KR R V ++ ++P
Sbjct: 431 VREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVP 490
Query: 529 KNPSGKILRKDL 540
+N GKI+++ L
Sbjct: 491 RNDMGKIMKRAL 502
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 134/498 (26%), Positives = 220/498 (44%), Gaps = 36/498 (7%)
Query: 49 RTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSL 108
RTAF+ G LT + + +++ L G+ G + +LS N + AV +
Sbjct: 22 RTAFM--VDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALI 79
Query: 109 GAIITTTNPLNTKQEIAKQIADSKP--VLAFT-----ISQLVPKLAGSTLPIVLLDDEKT 161
GAI+ N EIA + D P V+A T ++ ++P L G + D
Sbjct: 80 GAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD---- 135
Query: 162 TSTEGIKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAM 221
G + P D +++++ G +G + S NL+
Sbjct: 136 ----GSGPFAPFKDLASDTP---FSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIA 188
Query: 222 VQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISK 281
+++ ++L + + + +P+FH+ GL T L +G V+ +KFD + I
Sbjct: 189 QSSLVDAWRLTEADVN-LGMLPLFHVTGLGLMLT-LQQAGGASVIAAKFDPAQAARDIEA 246
Query: 282 YRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRIL 341
++ T A + L+SL++V P E IE F P
Sbjct: 247 HKVTVMAEFAPMLGNILDQA----APAQLASLRAVTGLDTP---ETIERFEATCPNATFW 299
Query: 342 QGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGP 401
+G +E++G+ ST + R +AG +VD + + L + GE+ L+GP
Sbjct: 300 ATFGQSETSGL--STFAPYRDRPK-SAGRPLFWRTVAVVDAED-RPLPPGEVGEIVLRGP 355
Query: 402 SIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRL--KELIKYKGYQVPPAE 459
++ KGY++N AT GW TGD+ D DG++F R KELIK G V PAE
Sbjct: 356 TVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAE 414
Query: 460 LEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVR 519
+E L HP I+DA V+ PD + + A V + G ++ + + +FVA +A YK+ +
Sbjct: 415 VEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPK 474
Query: 520 RVAFVASIPKNPSGKILR 537
V FV ++PK+ G I R
Sbjct: 475 HVVFVEALPKDAKGAIDR 492
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 120/483 (24%), Positives = 216/483 (44%), Gaps = 14/483 (2%)
Query: 53 IDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAII 112
I+ A G ++++EL V+ L G++ G + + S+ V+ LA + G +
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 113 TTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTT 172
N T E+ I D++P + + + + T T G +
Sbjct: 81 LPLNTAYTLHELDYFITDAEPXIV-----VCDPSXRDGIAAIAAXVGATVETLGPDGRGS 135
Query: 173 LPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLE 232
L DR DD+A +LY+SGTTG S G + SH NL + T++ ++
Sbjct: 136 LTDAAAGASEAFATIDR-GADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFT 194
Query: 233 DGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYXXXXXX 292
+ I +P++H +GL + L + +++ L FD +L ++ RAT
Sbjct: 195 P-DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPT 251
Query: 293 XXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGI 352
++ +SG APL + + +L+ YG+TE+
Sbjct: 252 FYTRLLQSPRLTXET--TGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETNM- 307
Query: 353 GASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPE 412
+++ + R G G P + A++ DP++G L G + + GP++ GY+ PE
Sbjct: 308 -NTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPE 366
Query: 413 ATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISD 472
T S +G+ TGDL ID+ G++ I+ R +L+ G+ V P E+E+ + P + +
Sbjct: 367 XTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVE 426
Query: 473 AAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPS 532
+AV+ P + G+ A VVR+ G+ + E +V+ + Q+A + V FV +P+N
Sbjct: 427 SAVIGVPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTM 486
Query: 533 GKI 535
G +
Sbjct: 487 GAV 489
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 122/486 (25%), Positives = 216/486 (44%), Gaps = 17/486 (3%)
Query: 53 IDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAII 112
I+ A G ++++EL V+ L G++ G + + S+ V+ LA + G +
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 113 TTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTT 172
N T E+ I D++P + + + + T T G +
Sbjct: 81 LPLNTAYTLHELDYFITDAEPXIV-----VCDPSXRDGIAAIAAXVGATVETLGPDGRGS 135
Query: 173 LPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLE 232
L DR DD+A +LY+SGTTG S G + SH NL + T++ ++
Sbjct: 136 LTDAAAGASEAFATIDR-GADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFT 194
Query: 233 DGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYXXXXXX 292
+ I +P++H +GL + L + +++ L FD +L ++ RAT
Sbjct: 195 P-DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPT 251
Query: 293 XXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGI 352
++ +SG APL + + +L+ YG+TE+
Sbjct: 252 FYTRLLQSPRLTXET--TGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETNM- 307
Query: 353 GASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPE 412
+++ + R G G P + A++ DP++G L G + + GP++ GY+ PE
Sbjct: 308 -NTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPE 366
Query: 413 ATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISD 472
T S +G+ TGDL ID+ G++ I+ R +L+ G+ V P E+E+ + P + +
Sbjct: 367 XTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVE 426
Query: 473 AAVVPFPDKEAGQYPMAYVV--RE-AGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPK 529
+AV+ P + G+ A+VV RE A S + E+ FV ++A + V FV +P+
Sbjct: 427 SAVIGVPHADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLAXFXMPXXVIFVDDLPR 486
Query: 530 NPSGKI 535
N G +
Sbjct: 487 NTMGAV 492
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 119/483 (24%), Positives = 213/483 (44%), Gaps = 14/483 (2%)
Query: 53 IDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAII 112
I+ A G ++++EL V+ L G++ G + + S+ V+ LA + G +
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 113 TTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTT 172
N T E+ I D++P + + + + T T G +
Sbjct: 81 LPLNTAYTLHELDYFITDAEPXIV-----VCDPSXRDGIAAIAAXVGATVETLGPDGRGS 135
Query: 173 LPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLE 232
L DR DD+A +LY+SGTTG S G + SH NL + T++ ++
Sbjct: 136 LTDAAAGASEAFATIDR-GADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFT 194
Query: 233 DGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYXXXXXX 292
+ I +P++H +GL + L + +++ L FD +L ++ RAT
Sbjct: 195 P-DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPT 251
Query: 293 XXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGI 352
++ +SG APL + + +L+ YG+TE+
Sbjct: 252 FYTRLLQSPRLTXET--TGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETNM- 307
Query: 353 GASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPE 412
+++ + R G G P + A++ DP++G L G + + GP++ GY+ PE
Sbjct: 308 -NTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPE 366
Query: 413 ATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISD 472
T S +G+ TGDL ID+ G++ I+ R +L+ G+ V P E+E+ + P + +
Sbjct: 367 XTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVE 426
Query: 473 AAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPS 532
+AV+ P + G+ A+VV SE +V+ + Q+A + V FV +P+N
Sbjct: 427 SAVIGVPHADFGEGVTAFVVLXREFAPSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTM 486
Query: 533 GKI 535
G +
Sbjct: 487 GAV 489
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 133/517 (25%), Positives = 217/517 (41%), Gaps = 61/517 (11%)
Query: 60 HLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLN 119
H ++ EL D ++ +GI++ +++ PN F V A+ LGA+ P +
Sbjct: 50 HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSH 109
Query: 120 TKQEI--------------------------AKQIADSKPVLAFTISQLVPKLAGSTLPI 153
EI A+Q+ P L I +AG
Sbjct: 110 RSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNII------VAGEAEEF 163
Query: 154 VLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVS 213
+ L+D TE +K LP+ + DVA L S G+TG SK +
Sbjct: 164 LPLED---LHTEPVK----LPE--------------VKSSDVAFLQLSGGSTGLSKLIPR 202
Query: 214 SHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFAT-GLLASGSTIVVLSKFDM 272
+H + I ++ + L D ++ +PM H Y L++ G+L +G +V+
Sbjct: 203 THDDYIYSLKRSVEVCWL-DHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSP 261
Query: 273 HEMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFV 332
+ I + + T A R DLSSLQ + GGA S E V
Sbjct: 262 DDAFPLIEREKVTITALVPPLAMVWMDAASSRRD--DLSSLQVLQVGGAKFSAEAARR-V 318
Query: 333 QKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQ 392
+ + Q +G+ E D EE +SP E+++ D D + + +
Sbjct: 319 KAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGE 377
Query: 393 TGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKG 452
TG L +GP ++GY+ E ++ +G+ RTGD+ + DG+I + R K+ I G
Sbjct: 378 TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGG 437
Query: 453 YQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVV-REAGSRLSENEVMDFVARQ 511
+V E+E LL HP + DAA+V PD+ G+ +++ R+ + +E + R
Sbjct: 438 EKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAF-LRERG 496
Query: 512 VAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 548
+A YK RV FV S P+ GK+ +K L + + KL
Sbjct: 497 LAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 138/515 (26%), Positives = 236/515 (45%), Gaps = 48/515 (9%)
Query: 48 GRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMS 107
G+TA+ID TG T+ EL ++ L +G+ ILL+ +++ PV L +
Sbjct: 38 GKTAYIDD-TGS-TTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALY 95
Query: 108 LGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGI 167
G + N L T + + S LV + + ++ +G
Sbjct: 96 AGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQAL---------ESAEHDGC 146
Query: 168 KTVTTLPQMMRKEPS-GTLVRDRINQ------------DDVATLLYSSGTTGASKGVVSS 214
+ + + P+ EP L + I+ DD+A LYSSG+TG KG V +
Sbjct: 147 QLIVSQPR--ESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHT 204
Query: 215 HRNLIAMVQT----VLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKF 270
H NL + +LG + + + F +F YGL T L+ G+T +++++
Sbjct: 205 HANLYWTAELYAKPILG---IAENDVVF-SAAKLFFAYGLGNGLTFPLSVGATAILMAER 260
Query: 271 DMHE-MLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIE 329
+ + + + ++R T + + ++ D++ ++ S G L RE+ E
Sbjct: 261 PTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-LPARADVA-IRICTSAGEALPREIGE 318
Query: 330 GFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALL 389
F + IL G G TE I S + + +YGT G P E ++ D ++G A+
Sbjct: 319 RFTAHF-GCEILDGIGSTEMLHIFLSNRA--GAVEYGTTGRPVPGYEIELRD-EAGHAVP 374
Query: 390 VNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGD-LCYIDDDGFIFIVDRLKELI 448
+ G+L++KGPS Y++N E + +T E W+R+GD C + + +++ R +++
Sbjct: 375 DGEVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPNGCYVY-AGRSDDML 432
Query: 449 KYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVV--RE-AGSRLSENEVM 505
K G V P E+E +L+ H + +AAVV D A+VV RE A S + E+
Sbjct: 433 KVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELK 491
Query: 506 DFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 540
FV ++AP+K R + FV +PK +GKI R L
Sbjct: 492 AFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKL 526
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 136/507 (26%), Positives = 223/507 (43%), Gaps = 43/507 (8%)
Query: 56 ATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTT 115
A G LT +EL V++V+ L G+R + +++PNS + LA+ LGA+
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84
Query: 116 NPLNTKQEIAKQIADSKPVLA-FTISQLVPKL---AGSTLPIVLLDD-----EKTTSTEG 166
NP E+A+ I + A + + V +GS I+ L D E +
Sbjct: 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPP 144
Query: 167 IKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVL 226
I+ PQ +P A + Y+SGTTG K + R + V +
Sbjct: 145 IED----PQREPAQP--------------AFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 227 GRFKLEDGEQTFIC-TVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRAT 285
+ L G + +P++H+ G A LA T VV+ +F + L + + + T
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT 246
Query: 286 YXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYG 345
+ A S L SL+ V GA + V+E Q P ++ GYG
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYG 305
Query: 346 LTESTGIGASTDSLEESRKYGTAGMLSPSM--EAKIVDPDSGKALLV--NQTGELWLKGP 401
TE+ +SL R+ T ++P E +IV G +V + GEL +
Sbjct: 306 TTEAM------NSLY-MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAAS 358
Query: 402 -SIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAEL 460
S GY + P+AT L +GW RT D+ +G + I+ R+ ++I G + P+E+
Sbjct: 359 DSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEI 417
Query: 461 EALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFV-ARQVAPYKRVR 519
E +L T P +++ V+ D+ GQ A VV G LS + + F + ++A +KR +
Sbjct: 418 ERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPK 477
Query: 520 RVAFVASIPKNPSGKILRKDLIKLATS 546
R + +PKN K+LR+ L++ +S
Sbjct: 478 RYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 140/509 (27%), Positives = 225/509 (44%), Gaps = 47/509 (9%)
Query: 56 ATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTT 115
A G LT +EL V++V+ L G+R + +++PNS + LA+ LGA+
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84
Query: 116 NPLNTKQEIAKQIADSKPVLA-FTISQLVPKL---AGSTLPIVLLDD-----EKTTSTEG 166
NP E+A+ I + A + + V +GS I+ L D E +
Sbjct: 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPP 144
Query: 167 IKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVL 226
I+ PQ +EP+ A + Y+SGTTG K + R + V +
Sbjct: 145 IED----PQ---REPA-----------QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 227 GRFKLEDGEQTFIC-TVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRAT 285
+ L G + +P++H+ G A LA T VV+ +F + L + + + T
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVT 246
Query: 286 YXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYP--KVRILQG 343
+ A S L SL+ V GA + V+E Q P KV I
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI--- 303
Query: 344 YGLTESTGIGASTDSLEESRKYGTAGMLSPSM--EAKIVDPDSGKALLV--NQTGELWLK 399
YG TE+ +SL R+ T ++P E +IV G +V + GEL +
Sbjct: 304 YGTTEAM------NSLY-MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVA 356
Query: 400 GP-SIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPA 458
S GY + PEAT L +GW RT D+ +G + I+ R+ ++I G + P+
Sbjct: 357 ASDSAFVGYLNQPEATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPS 415
Query: 459 ELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFV-ARQVAPYKR 517
E+E +L T P +++ V+ D+ GQ A VV G LS + + F + ++A +KR
Sbjct: 416 EIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKR 475
Query: 518 VRRVAFVASIPKNPSGKILRKDLIKLATS 546
+R + +PKN K+LR+ L++ +S
Sbjct: 476 PKRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 135/507 (26%), Positives = 222/507 (43%), Gaps = 43/507 (8%)
Query: 56 ATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTT 115
A G LT +EL V++V+ L G+R + +++PNS + LA+ LGA+
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84
Query: 116 NPLNTKQEIAKQIADSKPVLA-FTISQLVPKL---AGSTLPIVLLDD-----EKTTSTEG 166
NP E+A+ I + A + + V +GS I+ L D E +
Sbjct: 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPP 144
Query: 167 IKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVL 226
I+ PQ +P A + Y+SGTTG K + R + V +
Sbjct: 145 IED----PQREPAQP--------------AFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 227 GRFKLEDGEQTFIC-TVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRAT 285
+ L G + +P++H+ G A LA T VV+ +F + L + + + T
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT 246
Query: 286 YXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYG 345
+ A S L SL+ V GA + V+E Q P ++ YG
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYG 305
Query: 346 LTESTGIGASTDSLEESRKYGTAGMLSPSM--EAKIVDPDSGKALLV--NQTGELWLKGP 401
TE+ +SL R+ T ++P E +IV G +V + GEL +
Sbjct: 306 TTEAM------NSLY-MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAAS 358
Query: 402 -SIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAEL 460
S GY + P+AT L +GW RT D+ +G + I+ R+ ++I G + P+E+
Sbjct: 359 DSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEI 417
Query: 461 EALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFV-ARQVAPYKRVR 519
E +L T P +++ V+ D+ GQ A VV G LS + + F + ++A +KR +
Sbjct: 418 ERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPK 477
Query: 520 RVAFVASIPKNPSGKILRKDLIKLATS 546
R + +PKN K+LR+ L++ +S
Sbjct: 478 RYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 138/532 (25%), Positives = 232/532 (43%), Gaps = 40/532 (7%)
Query: 49 RTAFI----DAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLA 104
RTA I D + +H+++ EL R V + L D+GI+KG V+ + P V LA
Sbjct: 92 RTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151
Query: 105 VMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIV-----LLDDE 159
+GA+ + + + +A +I DS L T + V AG ++P+ L +
Sbjct: 152 CARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGV--RAGRSIPLKKNVDDALKNP 209
Query: 160 KTTSTEGIKTVT-TLPQMMRKEPSGTLVRDRI------------NQDDVATLLYSSGTTG 206
TS E + + T + +E RD I N +D +LY+SG+TG
Sbjct: 210 NVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTG 269
Query: 207 ASKGVVSSHRNLIAMVQTVLGR-FKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIV 265
KGV+ + + T F G+ + CT + + G + G LA G+T +
Sbjct: 270 KPKGVLHTTGGYLVYAATTFKYVFDYHPGD-IYWCTADVGWVTGHSYLLYGPLACGATTL 328
Query: 266 VLSKFDMH----EMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGA 321
+ M + K++ + D+ D SSL+ + S G
Sbjct: 329 MFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388
Query: 322 PLSREVIEGFVQKYPKVR--ILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKI 379
P++ E E + +K K + ++ + TE+ G + K G+A ++ +
Sbjct: 389 PINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPAL 448
Query: 380 VDPDSGKALLVNQTGELWL--KGPSIMKGYFSNPEATTSTLDS--EGWLRTGDLCYIDDD 435
VD + G G L + P + F + E T S + +GD D+D
Sbjct: 449 VD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDED 507
Query: 436 GFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREA 495
G+ +I R+ +++ G+++ AE+E+ L+ HPKI++AAVV P GQ AYV
Sbjct: 508 GYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNH 567
Query: 496 GSRLSEN---EVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLA 544
G S EV ++VA+++ P + + S+PK SGKI+R+ L K+A
Sbjct: 568 GEEPSPELYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 130/508 (25%), Positives = 225/508 (44%), Gaps = 35/508 (6%)
Query: 54 DAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIIT 113
D + TF +L D + GI KG ++L + F L + LGAI
Sbjct: 80 DYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAV 139
Query: 114 TTNPLNTKQEIAKQIADSKPVLAFTISQL-VPKL---AGSTLPIVLLDDEKTTST--EG- 166
+ ++I +I + + I++ VP+ A + + L K EG
Sbjct: 140 PATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGW 199
Query: 167 IKTVTTLPQM--MRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQT 224
I L + + + P+G + +D+ + +SSGT G K V H N +
Sbjct: 200 IDFRKELEESSPIFERPTGEV---STKNEDICLVYFSSGTAGFPKMV--EHDNTYPLGHI 254
Query: 225 VLGRFKLEDGEQTFICTVPMFHIYGLAAFAT--GLLASGSTIVVLS--KFDMHEMLSSIS 280
+ ++ ++ E + +G + G +G + V +F+ ML S
Sbjct: 255 LTAKY-WQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKAS 313
Query: 281 KYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRI 340
KY T + S Y+ S+L+ + G PL+ EV F++ + +++
Sbjct: 314 KYGVTTFCAPPTIYRFLIK---EDLSHYNFSTLKYAVVAGEPLNPEVFNRFLE-FTGIKL 369
Query: 341 LQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWL-- 398
++G+G TE+ A+ +E K G+ G +P + +++D D G+ V + GE+ +
Sbjct: 370 MEGFGQTETVVTIATFPWMEP--KPGSIGKPTPGYKIELMDRD-GRLCEVGEEGEIVINT 426
Query: 399 ---KGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQV 455
K + Y +PE T T +G+ TGD+ ++D+DG+++ V R ++IK GY+V
Sbjct: 427 MEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKV 485
Query: 456 PPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSE---NEVMDFVARQV 512
P E+E+ L+ HP + + A+ PD GQ A +V S+ NE+ D V
Sbjct: 486 GPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVT 545
Query: 513 APYKRVRRVAFVASIPKNPSGKILRKDL 540
APYK R + FV +PK SGKI R ++
Sbjct: 546 APYKYPRIIEFVPELPKTISGKIRRVEI 573
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 139/509 (27%), Positives = 225/509 (44%), Gaps = 47/509 (9%)
Query: 56 ATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTT 115
A G LT +EL V++V+ L G+R + +++PNS + LA+ LGA+
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84
Query: 116 NPLNTKQEIAKQIADSKPVLA-FTISQLVPKL---AGSTLPIVLLDD-----EKTTSTEG 166
NP E+A+ I + A + + V +GS I+ L D E +
Sbjct: 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPP 144
Query: 167 IKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVL 226
I+ PQ +EP+ A + Y+SGTTG K + R + V +
Sbjct: 145 IED----PQ---REPA-----------QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 227 GRFKLEDGEQTFIC-TVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRAT 285
+ L G + +P++H+ G A LA T VV+ +F + L + + + T
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT 246
Query: 286 YXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYP--KVRILQG 343
+ A S L SL+ V GA + V+E Q P KV I
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI--- 303
Query: 344 YGLTESTGIGASTDSLEESRKYGTAGMLSPSM--EAKIVDPDSGKALLV--NQTGELWLK 399
YG TE+ +SL R+ T ++P E +IV G +V + GEL +
Sbjct: 304 YGTTEAM------NSLY-MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVA 356
Query: 400 GP-SIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPA 458
S GY + P+AT L +GW RT D+ +G + I+ R+ ++I G + P+
Sbjct: 357 ASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPS 415
Query: 459 ELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFV-ARQVAPYKR 517
E+E +L T P +++ V+ D+ GQ A VV G LS + + F + ++A +KR
Sbjct: 416 EIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKR 475
Query: 518 VRRVAFVASIPKNPSGKILRKDLIKLATS 546
+R + +PKN K+LR+ L++ +S
Sbjct: 476 PKRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 137/532 (25%), Positives = 231/532 (43%), Gaps = 40/532 (7%)
Query: 49 RTAFI----DAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLA 104
RTA I D + +H+++ EL R V + L D+GI+KG V+ + P V LA
Sbjct: 92 RTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151
Query: 105 VMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIV-----LLDDE 159
+GA+ + + + +A +I DS L T + V AG ++P+ L +
Sbjct: 152 CARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGV--RAGRSIPLKKNVDDALKNP 209
Query: 160 KTTSTEGIKTVT-TLPQMMRKEPSGTLVRDRI------------NQDDVATLLYSSGTTG 206
TS E + + T + +E RD I N +D +LY+SG+TG
Sbjct: 210 NVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTG 269
Query: 207 ASKGVVSSHRNLIAMVQTVLGR-FKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIV 265
KGV+ + + T F G+ + CT + + G + G LA G+T +
Sbjct: 270 KPKGVLHTTGGYLVYAATTFKYVFDYHPGD-IYWCTADVGWVTGHSYLLYGPLACGATTL 328
Query: 266 VLSKFDMH----EMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGA 321
+ M + K++ + D+ D SSL+ + S G
Sbjct: 329 MFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGE 388
Query: 322 PLSREVIEGFVQKYPKVR--ILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKI 379
P++ E E + +K K + ++ + TE+ G + K G+A ++ +
Sbjct: 389 PINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPAL 448
Query: 380 VDPDSGKALLVNQTGELWL--KGPSIMKGYFSNPEATTSTLDS--EGWLRTGDLCYIDDD 435
VD + G G L + P + F + E T S + +GD D+D
Sbjct: 449 VD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDED 507
Query: 436 GFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREA 495
G+ +I R+ +++ G+++ AE+E+ L+ HPKI++AAVV P GQ AYV
Sbjct: 508 GYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNH 567
Query: 496 GSRLSEN---EVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLA 544
G S EV ++V +++ P + + S+PK SGKI+R+ L K+A
Sbjct: 568 GEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 139/509 (27%), Positives = 225/509 (44%), Gaps = 47/509 (9%)
Query: 56 ATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTT 115
A G LT +EL V++V+ L G+R + +++PNS + LA+ LGA+
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84
Query: 116 NPLNTKQEIAKQIADSKPVLA-FTISQLVPKL---AGSTLPIVLLDD-----EKTTSTEG 166
NP E+A+ I + A + + V +GS I+ L D E +
Sbjct: 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPP 144
Query: 167 IKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVL 226
I+ PQ +EP+ A + Y+SGTTG K + R + V +
Sbjct: 145 IED----PQ---REPA-----------QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 227 GRFKLEDGEQTFIC-TVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRAT 285
+ L G + +P++H+ G A LA T VV+ +F + L + + + T
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT 246
Query: 286 YXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYP--KVRILQG 343
+ A S L SL+ V GA + V+E Q P KV I
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI--- 303
Query: 344 YGLTESTGIGASTDSLEESRKYGTAGMLSPSM--EAKIVDPDSGKALLV--NQTGELWLK 399
YG TE+ +SL R+ T ++P E +IV G +V + GEL +
Sbjct: 304 YGTTEAM------NSLY-MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVA 356
Query: 400 GP-SIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPA 458
S GY + P+AT L +GW RT D+ +G + I+ R+ ++I G + P+
Sbjct: 357 ASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPS 415
Query: 459 ELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFV-ARQVAPYKR 517
E+E +L T P +++ V+ D+ GQ A VV G LS + + F + ++A +KR
Sbjct: 416 EIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKR 475
Query: 518 VRRVAFVASIPKNPSGKILRKDLIKLATS 546
+R + +PKN K+LR+ L++ +S
Sbjct: 476 PKRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 137/532 (25%), Positives = 232/532 (43%), Gaps = 40/532 (7%)
Query: 49 RTAFI----DAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLA 104
RTA I D + +H+++ EL R V + L D+GI+KG V+ + P V LA
Sbjct: 92 RTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151
Query: 105 VMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIV-----LLDDE 159
+GA+ + + + +A +I DS L T + V AG+++P+ L +
Sbjct: 152 CARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGV--RAGASIPLKKNVDDALKNP 209
Query: 160 KTTSTEGIKTVT-TLPQMMRKEPSGTLVRDRI------------NQDDVATLLYSSGTTG 206
TS E + + T + +E RD I N +D +LY+SG+TG
Sbjct: 210 NVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTG 269
Query: 207 ASKGVVSSHRNLIAMVQTVLGR-FKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIV 265
KGV+ + + T F G+ + CT + + G + G LA G+T +
Sbjct: 270 KPKGVLHTTGGYLVYAATTFKYVFDYHPGD-IYWCTADVGWVTGHSYLLYGPLACGATTL 328
Query: 266 VLSKFDMH----EMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGA 321
+ M + K++ + D+ D SSL+ + S G
Sbjct: 329 MFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388
Query: 322 PLSREVIEGFVQKYPKVR--ILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKI 379
P++ E E + +K K + ++ + TE+ G + K G+A ++ +
Sbjct: 389 PINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPAL 448
Query: 380 VDPDSGKALLVNQTGELWL--KGPSIMKGYFSNPEATTSTLDS--EGWLRTGDLCYIDDD 435
VD + G G L + P + F + E T S + +GD D+D
Sbjct: 449 VD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDED 507
Query: 436 GFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREA 495
G+ +I R+ +++ G+++ AE+E+ L+ HPKI++AAVV P GQ AYV
Sbjct: 508 GYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNH 567
Query: 496 GSRLSEN---EVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLA 544
G S EV ++V +++ P + + S+PK SGKI+R+ L K+A
Sbjct: 568 GEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 137/532 (25%), Positives = 231/532 (43%), Gaps = 40/532 (7%)
Query: 49 RTAFI----DAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLA 104
RTA I D + +H+++ EL R V + L D+GI+KG V+ + P V LA
Sbjct: 92 RTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151
Query: 105 VMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIV-----LLDDE 159
+GA+ + + + +A +I DS L T + V AG ++P+ L +
Sbjct: 152 CARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGV--RAGRSIPLKKNVDDALKNP 209
Query: 160 KTTSTEGIKTVT-TLPQMMRKEPSGTLVRDRI------------NQDDVATLLYSSGTTG 206
TS E + + T + +E RD I N +D +LY+SG+TG
Sbjct: 210 NVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTG 269
Query: 207 ASKGVVSSHRNLIAMVQTVLGR-FKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIV 265
KGV+ + + T F G+ + CT + + G + G LA G+T +
Sbjct: 270 KPKGVLHTTGGYLVYAATTFKYVFDYHPGD-IYWCTADVGWVTGHSYLLYGPLACGATTL 328
Query: 266 VLSKFDMH----EMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGA 321
+ M + K++ + D+ D SSL+ + S G
Sbjct: 329 MFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388
Query: 322 PLSREVIEGFVQKYPKVR--ILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKI 379
P++ E E + +K K + ++ + TE+ G + K G+A ++ +
Sbjct: 389 PINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPAL 448
Query: 380 VDPDSGKALLVNQTGELWL--KGPSIMKGYFSNPEATTSTLDS--EGWLRTGDLCYIDDD 435
VD + G G L + P + F + E T S + +GD D+D
Sbjct: 449 VD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDED 507
Query: 436 GFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREA 495
G+ +I R+ +++ G+++ AE+E+ L+ HPKI++AAVV P GQ AYV
Sbjct: 508 GYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNH 567
Query: 496 GSRLSEN---EVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLA 544
G S EV ++V +++ P + + S+PK SGKI+R+ L K+A
Sbjct: 568 GEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 137/532 (25%), Positives = 231/532 (43%), Gaps = 40/532 (7%)
Query: 49 RTAFI----DAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLA 104
RTA I D + +H+++ EL R V + L D+GI+KG V+ + P V LA
Sbjct: 92 RTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151
Query: 105 VMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIV-----LLDDE 159
+GA+ + + + +A +I DS L T + V AG ++P+ L +
Sbjct: 152 CARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGV--RAGRSIPLKKNVDDALKNP 209
Query: 160 KTTSTEGIKTVT-TLPQMMRKEPSGTLVRDRI------------NQDDVATLLYSSGTTG 206
TS E + + T + +E RD I N +D +LY+SG+TG
Sbjct: 210 NVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTG 269
Query: 207 ASKGVVSSHRNLIAMVQTVLGR-FKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIV 265
KGV+ + + T F G+ + CT + + G + G LA G+T +
Sbjct: 270 KPKGVLHTTGGYLVYAATTFKYVFDYHPGD-IYWCTADVGWVTGHSYLLYGPLACGATTL 328
Query: 266 VLSKFDMH----EMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGA 321
+ M + K++ + D+ D SSL+ + S G
Sbjct: 329 MFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388
Query: 322 PLSREVIEGFVQKYPKVR--ILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKI 379
P++ E E + +K K + ++ + TE+ G + K G+A ++ +
Sbjct: 389 PINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPAL 448
Query: 380 VDPDSGKALLVNQTGELWL--KGPSIMKGYFSNPEATTSTLDS--EGWLRTGDLCYIDDD 435
VD + G G L + P + F + E T S + +GD D+D
Sbjct: 449 VD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDED 507
Query: 436 GFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREA 495
G+ +I R+ +++ G+++ AE+E+ L+ HPKI++AAVV P GQ AYV
Sbjct: 508 GYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNH 567
Query: 496 GSRLSEN---EVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLA 544
G S EV ++V +++ P + + S+PK SGKI+R+ L K+A
Sbjct: 568 GEEPSPELYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 134/517 (25%), Positives = 215/517 (41%), Gaps = 61/517 (11%)
Query: 60 HLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLN 119
H ++ EL D ++ +GI++ +++ PN F V A+ LGA+ P +
Sbjct: 50 HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSH 109
Query: 120 TKQEI--------------------------AKQIADSKPVLAFTISQLVPKLAGSTLPI 153
EI A+Q+ P L I +AG
Sbjct: 110 RSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNII------VAGEAEEF 163
Query: 154 VLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVS 213
+ L+D TE +K LP+ + DVA L S G+TG SK +
Sbjct: 164 LPLED---LHTEPVK----LPE--------------VKSSDVAFLQLSGGSTGLSKLIPR 202
Query: 214 SHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFAT-GLLASGSTIVVLSKFDM 272
+H + I ++ + L D ++ +P H Y L++ G+L +G +V+
Sbjct: 203 THDDYIYSLKRSVEVCWL-DHSTVYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSP 261
Query: 273 HEMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFV 332
+ I + + T A R DLSSLQ + GGA S E V
Sbjct: 262 DDAFPLIEREKVTITALVPPLAXVWXDAASSRRD--DLSSLQVLQVGGAKFSAEAARR-V 318
Query: 333 QKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQ 392
+ + Q +G E D EE SP E+++ D D + + +
Sbjct: 319 KAVFGCTLQQVFGXAEGLVNYTRLDDPEEIIVNTQGKPXSPYDESRVWD-DHDRDVKPGE 377
Query: 393 TGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKG 452
TG L +GP ++GY+ E ++ +G+ RTGD+ + DG+I + R K+ I G
Sbjct: 378 TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGG 437
Query: 453 YQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVV-REAGSRLSENEVMDFVARQ 511
+V E+E LL HP + DAA V PD+ G+ +++ R+ + +E + R
Sbjct: 438 EKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPKAAELKAF-LRERG 496
Query: 512 VAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 548
+A YK RV FV S P+ GK+ +K L + + KL
Sbjct: 497 LAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 137/507 (27%), Positives = 214/507 (42%), Gaps = 43/507 (8%)
Query: 56 ATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTT 115
A G LT +EL V++V+ L G+R + +++PNS + LA+ LGA+
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84
Query: 116 NPLNTKQEIAKQIADSKPVLA-FTISQLVPKL---AGSTLPIVLLDD-----EKTTSTEG 166
NP E+A+ I + A + + V +GS I+ L D E +
Sbjct: 85 NPRLKSAELAELIKRGEXTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPP 144
Query: 167 IKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVL 226
I+ PQ +P A + Y+SGTTG K + R + V
Sbjct: 145 IED----PQREPAQP--------------AFIFYTSGTTGLPKAAIIPQRAAESRVLFXS 186
Query: 227 GRFKLEDGEQTFICTV-PMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRAT 285
+ L G + + P++H+ G A LA T VV+ +F + L + + + T
Sbjct: 187 TQVGLRHGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT 246
Query: 286 YXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYP--KVRILQG 343
+ A S L SL+ V GA V+E Q P KV I
Sbjct: 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNI--- 303
Query: 344 YGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLV--NQTGELWLKGP 401
YG TE A K GT E +IV G +V + GEL +
Sbjct: 304 YGTTE-----AXNSLYXRQPKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAAS 358
Query: 402 -SIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAEL 460
S GY + P+AT L +GW RT D+ +G + I+ R+ + I G + P+E+
Sbjct: 359 DSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEI 417
Query: 461 EALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFV-ARQVAPYKRVR 519
E +L T P +++ V+ D+ GQ A VV G LS + + F + ++A +KR +
Sbjct: 418 ERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPK 477
Query: 520 RVAFVASIPKNPSGKILRKDLIKLATS 546
R + +PKN K+LR+ L++ +S
Sbjct: 478 RYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 137/532 (25%), Positives = 230/532 (43%), Gaps = 40/532 (7%)
Query: 49 RTAFI----DAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLA 104
RTA I D + +H+++ EL R V + L D+GI+KG V+ + P V LA
Sbjct: 92 RTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151
Query: 105 VMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIV-----LLDDE 159
+GA+ + + + +A I DS L T + V AG ++P+ L +
Sbjct: 152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGV--RAGRSIPLKKNVDDALKNP 209
Query: 160 KTTSTEGIKTVT-TLPQMMRKEPSGTLVRDRI------------NQDDVATLLYSSGTTG 206
TS E + + T + +E RD I N +D +LY+SG+TG
Sbjct: 210 NVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTG 269
Query: 207 ASKGVVSSHRNLIAMVQTVLGR-FKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIV 265
KGV+ + + T F G+ + CT + + G + G LA G+T +
Sbjct: 270 KPKGVLHTTGGYLVYAATTFKYVFDYHPGD-IYWCTADVGWVTGHSYLLYGPLACGATTL 328
Query: 266 VLSKFDMH----EMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGA 321
+ M + K++ + D+ D SSL+ + S G
Sbjct: 329 MFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388
Query: 322 PLSREVIEGFVQKYPKVR--ILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKI 379
P++ E E + +K K + ++ + TE+ G + K G+A ++ +
Sbjct: 389 PINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPAL 448
Query: 380 VDPDSGKALLVNQTGELWL--KGPSIMKGYFSNPEATTSTLDS--EGWLRTGDLCYIDDD 435
VD + G G L + P + F + E T S + +GD D+D
Sbjct: 449 VD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDED 507
Query: 436 GFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREA 495
G+ +I R+ +++ G+++ AE+E+ L+ HPKI++AAVV P GQ AYV
Sbjct: 508 GYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNH 567
Query: 496 GSRLSEN---EVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLA 544
G S EV ++V +++ P + + S+PK SGKI+R+ L K+A
Sbjct: 568 GEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 136/532 (25%), Positives = 230/532 (43%), Gaps = 40/532 (7%)
Query: 49 RTAFI----DAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLA 104
RTA I D + +H+++ EL R V + L D+GI+KG V+ + P V LA
Sbjct: 92 RTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151
Query: 105 VMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIV-----LLDDE 159
+GA+ + + + +A +I DS L T + V AG ++P+ L +
Sbjct: 152 CARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGV--RAGRSIPLKKNVDDALKNP 209
Query: 160 KTTSTEGIKTVT-TLPQMMRKEPSGTLVRDRI------------NQDDVATLLYSSGTTG 206
TS E + + T + +E RD I N +D +LY+SG+TG
Sbjct: 210 NVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTG 269
Query: 207 ASKGVVSSHRNLIAMVQTVLGR-FKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIV 265
KGV+ + + T F G+ + CT + + G + G LA G+T +
Sbjct: 270 KPKGVLHTTGGYLVYAATTFKYVFDYHPGD-IYWCTADVGWVTGHSYLLYGPLACGATTL 328
Query: 266 VLSKFDMH----EMLSSISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGA 321
+ M + K++ + D+ D SSL+ + S G
Sbjct: 329 MFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388
Query: 322 PLSREVIEGFVQKYPKVR--ILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKI 379
P++ E E + +K K + ++ + TE+ G + K G+A ++ +
Sbjct: 389 PINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPAL 448
Query: 380 VDPDSGKALLVNQTGELWL--KGPSIMKGYFSNPEATTSTLDS--EGWLRTGDLCYIDDD 435
VD + G G L + P + F + E T S + +GD D+D
Sbjct: 449 VD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDED 507
Query: 436 GFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREA 495
G+ +I R+ +++ G+++ AE+E+ L+ HPKI++AAVV P GQ AYV
Sbjct: 508 GYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNH 567
Query: 496 GSRLSEN---EVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLA 544
G S EV ++V +++ P + + S+PK SG I+R+ L K+A
Sbjct: 568 GEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRILRKIA 619
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/404 (25%), Positives = 191/404 (47%), Gaps = 39/404 (9%)
Query: 51 AFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGA 110
A+++ +T +T++++ + + L+ +GI KG + LL PNS+ F + LGA
Sbjct: 20 AYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGA 79
Query: 111 IITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTV 170
+ P+NT+ + P ++F +S K+ P + D + TV
Sbjct: 80 VAV---PINTRL--------AAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTV 128
Query: 171 T------TLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNL----IA 220
T +L + +R + + DD ++Y+SGTTG KGVV +H ++ +
Sbjct: 129 TDWIGADSLAERLRSAAADEPAVE-CGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASS 187
Query: 221 MVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLAS--GSTIVVLSKFDMHEMLSS 278
T+ R++ + +PMFH+ AA T + ++ G T++ + +FD ++ S
Sbjct: 188 WASTIDVRYR-----DRLLLPLPMFHV---AALTTVIFSAMRGVTLISMPQFDATKVWSL 239
Query: 279 ISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKV 338
I + R + ++ D + ++GGAP+ +I+ + K +
Sbjct: 240 IVEERVCIGGAVPAILNFMRQVPE--FAELDAPDFRYFITGGAPMPEALIKIYAAK--NI 295
Query: 339 RILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWL 398
++QGY LTES G G S + RK G+AG + + + D + + GE+ +
Sbjct: 296 EVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDG--VIREHGEGEVVI 353
Query: 399 KGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVD 442
K ++K Y++ PEAT D+ GW RTGD+ IDD+G+++I D
Sbjct: 354 KSDILLKEYWNRPEATRDAFDN-GWFRTGDIGEIDDEGYLYIKD 396
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 133/542 (24%), Positives = 224/542 (41%), Gaps = 58/542 (10%)
Query: 33 ESLDVTTFISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLS 92
+ L +T ++ A A ID R L++ EL +A D+++ L GI+ G L+
Sbjct: 25 QDLPLTDILTRHAASDSIAVIDGE--RQLSYRELNQAADNLACSLRRQGIKPGETALVQL 82
Query: 93 PNSIFFPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQL--VPKLAGST 150
N + A++ LG PVLA Q + A
Sbjct: 83 GNVAELYITFFALLKLGV---------------------APVLALFSHQRSELNAYASQI 121
Query: 151 LPIVLLDDEKTTSTEGIKTVTT---------LPQMMRKEPSGTLVRDRINQ--------- 192
P +L+ D + G + T + Q++ L +D IN
Sbjct: 122 EPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNL-QDAINHPAEDFTATP 180
Query: 193 ---DDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQT-FICTVPMFHIY 248
D+VA S GTTG K + +H + V+ + + +QT ++C +P H Y
Sbjct: 181 SPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFT--QQTRYLCAIPAAHNY 238
Query: 249 GLAAFAT-GLLASGSTIVVLSKFDMHEMLSSISKYRATYXXXXXXXXXXXXSGADQIRSK 307
+++ + G+ +G T+V+ + I K++ + S+
Sbjct: 239 AMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR 298
Query: 308 YDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGT 367
L+SL+ + GGA LS + + ++ Q +G+ E D E +
Sbjct: 299 AQLASLKLLQVGGARLS-ATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQ 357
Query: 368 AGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTG 427
+ P E + D + G L + G L +GP +GY+ +P+ S D+ G+ +G
Sbjct: 358 GYPMCPDDEVWVADAE-GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG 416
Query: 428 DLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYP 487
DL ID +G+I + R K+ I G ++ E+E LLL HP + AA+V D+ G+
Sbjct: 417 DLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKS 476
Query: 488 MAY-VVREAGSRLSENEVMDFVARQ-VAPYKRVRRVAFVASIPKNPSGKILRKDLIKLAT 545
AY VV+E L +V F+ Q +A +K RV V S+P GK+ +K L +
Sbjct: 477 CAYLVVKEP---LRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLA 533
Query: 546 SK 547
S+
Sbjct: 534 SR 535
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 123/494 (24%), Positives = 211/494 (42%), Gaps = 43/494 (8%)
Query: 61 LTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLNT 120
LT+ L + ++ L +G+ G ++ + V LAV+ G T +P
Sbjct: 101 LTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFP 160
Query: 121 KQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKE 180
+ +A + D+ L T L +L G+T + ++DE +
Sbjct: 161 VERLALSLEDTGAPLLVTSRPLSGRLTGTT--TLYVEDEAASDA---------------- 202
Query: 181 PSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDG-EQTFI 239
P+G L + +DVA ++++SG+TG KGV+S HR A+ T LG+ G ++ F+
Sbjct: 203 PAGNLATG-VGPEDVACVMFTSGSTGRPKGVMSPHR---ALTGTYLGQDYAGFGPDEVFL 258
Query: 240 -CTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYXXXXXXXXXXXX 298
C+ + +GL F L + + D E+ ++++ T
Sbjct: 259 QCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFL- 317
Query: 299 SGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDS 358
D++ ++ ++ ++GG P S + + +P +R+ GYG ES G + +
Sbjct: 318 --VDEVPEAFE--GVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGF-TTHHA 372
Query: 359 LEESRKYGTA---GMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATT 415
+ GTA G+ A ++D D K GEL++ G + GY S P T
Sbjct: 373 VVAGDLSGTALPIGVPLAGKRAYVLDDDL-KPAANGALGELYVAGAGLAHGYVSRPALTA 431
Query: 416 STL--------DSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTH 467
E RTGDL DG + V R + +K +G++V P E+EA L+ H
Sbjct: 432 ERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGH 491
Query: 468 PKISDAAVVPFPDKEAGQYPMAYVVRE-AGSRLSENEVMDFVARQVAPYKRVRRVAFVAS 526
P + AAV+ + + +AYVV E A + E+ VA + Y V
Sbjct: 492 PAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDE 551
Query: 527 IPKNPSGKILRKDL 540
+P+ P+GK+ R+ L
Sbjct: 552 LPRTPNGKLDRRAL 565
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 120/501 (23%), Positives = 222/501 (44%), Gaps = 39/501 (7%)
Query: 59 RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPL 118
R L++ EL R +++T L++ G+ KG L+ PN F +V A++ G ++
Sbjct: 54 RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYS 113
Query: 119 NTKQEIAKQIADSKPVL--------AFTISQLVPKLAGSTL--PIVLLDDEKTTSTEGIK 168
+ + E+ I +P L F+ +Q + L L I+L+ + + T +
Sbjct: 114 HRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLD 173
Query: 169 TVTTLPQMMRKEPSGTLVR-DRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLG 227
+ T P+ T V D+VA S G+TG K + +H + V+
Sbjct: 174 WIET--------PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE 225
Query: 228 RFKLEDGEQTFICTVPMFHIYGLAA-FATGLLASGSTIVVLSKFDMHEMLSSISKYRATY 286
L + +C +P H + L++ A G+L +G +V+ + S I +++
Sbjct: 226 ICGL-NSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNM 284
Query: 287 XXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKV---RILQG 343
A Q + + + SL+ + GGA E ++ P+V ++ Q
Sbjct: 285 ASLVPSAVIMWLEKAAQYKDQ--IQSLKLLQVGGASFP----ESLARQVPEVLNCKLQQV 338
Query: 344 YGLTESTGIGASTDSLEESRKYGTAGM-LSPSMEAKIVDPDSGKALLVNQTGELWLKGPS 402
+G+ E D +E + + T G +S E KIVD + + + + G L +GP
Sbjct: 339 FGMAEGLVNYTRLDDSDE-QIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPY 396
Query: 403 IMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEA 462
GY+ +PE + D + + +GDL DG + +V R+K+ I G ++ E+E
Sbjct: 397 TFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEK 456
Query: 463 LLLTHPKISDAAVVPFPDKEAGQYPMAYVVR---EAGSRLSENEVMDFVARQVAPYKRVR 519
L+L HP++ AA+V D++ G+ A++V E + + +M+ +A YK
Sbjct: 457 LILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMEL---GIAQYKLPD 513
Query: 520 RVAFVASIPKNPSGKILRKDL 540
++ + S+P GK+ +K L
Sbjct: 514 QIKLIESLPLTAVGKVDKKQL 534
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/543 (23%), Positives = 216/543 (39%), Gaps = 73/543 (13%)
Query: 52 FIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAI 111
F++ T+ +L + +++ L G + G +LLL + L + G I
Sbjct: 32 FLNKELEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCI 91
Query: 112 ITTTNP------LNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTE 165
P L+ Q I + +SKPV+ I+ + K DE T+ +
Sbjct: 92 AVPIYPPAQEKLLDKAQRI---VTNSKPVIVLXIADHIKKFTA---------DELNTNPK 139
Query: 166 GIKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTV 225
+K + + S + I +D+A L Y+SG+T KGV SH NL+ + +
Sbjct: 140 FLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKI 199
Query: 226 LGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHE----MLSSISK 281
F D E +P H GL + G + S F + L I+K
Sbjct: 200 FTSFHXND-ETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLKHITK 258
Query: 282 YRATYXXXXXXXXXXXXSGA-DQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYP---- 336
Y+AT ++ + DLSS + +G P+ E E F Q +
Sbjct: 259 YKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQAFKEFGF 318
Query: 337 -KVRILQGYGLTESTGI------GASTDSL-------EESRKY-------GTAGMLS--- 372
K YGL E+T + G+S +L ++ R + G+ ++S
Sbjct: 319 RKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGN 378
Query: 373 PSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTL-----DSEG---WL 424
P E KI+DPD+ +Q GE+W++ S+ KGY++ PE T D E +L
Sbjct: 379 PIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYL 438
Query: 425 RTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISD--AAVVPFPDKE 482
RTGDL ++ ++ +++ R+K+LI G P ++E L H + F +E
Sbjct: 439 RTGDLGFLHENE-LYVTGRIKDLIIIYGKNHYPQDIE-FSLXHSPLHHVLGKCAAFVIQE 496
Query: 483 AGQYPMAYVVREAGSRLSE--------NEVMDFVARQVAPYKRVRRVAFVASIPKNPSGK 534
+Y + V E +R + NE+ + V + + + P SGK
Sbjct: 497 EHEYKLT-VXCEVKNRFXDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAXPHTTSGK 555
Query: 535 ILR 537
I R
Sbjct: 556 IRR 558
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 129/531 (24%), Positives = 224/531 (42%), Gaps = 52/531 (9%)
Query: 58 GRHLTFSELWRAVDSVSTCLS-DMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTN 116
G +T+ EL V V+ L+ MG+RKG + + P + LA+ +GAI +
Sbjct: 111 GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVF 170
Query: 117 PLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQM 176
+ + +I D + T + G + + D+ T G++ V +
Sbjct: 171 AGFSSNSLRDRINDGDSKVVITTDE--SNRGGKVIETKRIVDDALRETPGVRHVLVYRKT 228
Query: 177 MRKEPSGTLVRDR-----------------INQDDVATLLYSSGTTGASKGVVSSHRN-L 218
+ RD ++ +D LLY+SG+TGA KGV S L
Sbjct: 229 NNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYL 288
Query: 219 IAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSS 278
+ + T+ F E F + I G G L G +V + S
Sbjct: 289 LGALLTMRYTFDTHQ-EDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSR 347
Query: 279 ----ISKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQK 334
I +++ T D + L SL+ + S G P++ EV E + +K
Sbjct: 348 YWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEK 407
Query: 335 YPK--VRILQGYGLTES-----TGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKA 387
K + I+ Y TES T + + K G+A ++A ++DP++G+
Sbjct: 408 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPM----KPGSASFPFFGIDAVVLDPNTGEE 463
Query: 388 LLVNQT-GELWLKG--PSIMKGYFSNPEATTSTLDSE--GWLRTGDLCYIDDDGFIFIVD 442
L + G L +K PS + + N + T + G+ TGD D DG+I+I+
Sbjct: 464 LNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILG 523
Query: 443 RLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVV---REAGSRL 499
R+ +++ G+++ AE+EA ++ P +++ AVV F D GQ A+VV + + S
Sbjct: 524 RVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTA 583
Query: 500 SENEVMDF-------VARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKL 543
+++E+ D V + + P+ + + V +PK SGKI+R+ L K+
Sbjct: 584 TDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKI 634
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 115/507 (22%), Positives = 205/507 (40%), Gaps = 37/507 (7%)
Query: 58 GRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNP 117
G T+ +L R DS++ + + + +L+ + +A+ G +
Sbjct: 27 GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDV 86
Query: 118 LNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMM 177
+ + I I +KP L I + + G +L + L + E E M
Sbjct: 87 HSAPERILAIIEIAKPSLIIAIEEFPLTIEGISL-VSLSEIESAKLAE-----------M 134
Query: 178 RKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQT 237
E + + + DD ++++SGTTG KGV SH NL++ ++ + +Q
Sbjct: 135 PYERTHS-----VKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQP 189
Query: 238 FICTVPMFHIYGLAAFATGLLASGSTIVVLSK---FDMHEMLSSISKYRATYXXXXXXXX 294
+ P + + LA G T+ L K D ++ ++I++
Sbjct: 190 QMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFA 249
Query: 295 XXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTEST-GIG 353
D ++K + +L G L+ +++P +I+ YG TE+T +
Sbjct: 250 DMAMLSDDFCQAK--MPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALS 307
Query: 354 ASTDSLEESRKYG--TAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNP 411
A + E Y G P I+D D GK L + GE+ + GP++ KGY +NP
Sbjct: 308 AIEITREMVDNYTRLPIGYPKPDSPTYIIDED-GKELSSGEQGEIIVTGPAVSKGYLNNP 366
Query: 412 EATTS---TLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHP 468
E T T + TGD+ + +D + RL IKY GY++ ++ L P
Sbjct: 367 EKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSP 426
Query: 469 KISDAAVVPFPDKEAG-QYPMAYVVREAGSRLSENEVMDF-------VARQVAPYKRVRR 520
++ A VP +KE Q +AY+V + G + + ++ V + Y +
Sbjct: 427 MVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSK 486
Query: 521 VAFVASIPKNPSGKILRKDLIKLATSK 547
+ S+P P+GKI K LI ++
Sbjct: 487 FLYRDSLPLTPNGKIDIKTLINEVNNR 513
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 96/374 (25%), Positives = 170/374 (45%), Gaps = 27/374 (7%)
Query: 190 INQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPM-FHIY 248
+ D+ ++Y+SG+TG KGV ++ L++ + + F L+ G Q F+ P F +
Sbjct: 141 VKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTG-QVFLNQAPFSFDLS 199
Query: 249 GLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYXXXXXXXXXXXXSGADQIR--- 305
+ + + L +G T+ + K +M++ A+ S A+
Sbjct: 200 VMDIYPS--LVTGGTLWAIDK----DMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEA 253
Query: 306 --SKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTES----TGIGASTDSL 359
S+ L ++++ L G L EV ++++PK I+ YG TE+ TGI + + L
Sbjct: 254 SFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVL 313
Query: 360 EESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATT---S 416
++ + G I+ D G + GE+ + GPS+ GY +PE T +
Sbjct: 314 DQYKSL-PVGYCKSDCRLLIMKED-GTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFT 371
Query: 417 TLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVV 476
+D E +TGD Y+ ++G +F RL IK GY++ E+E L + A +V
Sbjct: 372 MIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIV 430
Query: 477 PFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAP----YKRVRRVAFVASIPKNPS 532
P E Y +A VV S E ++ + +++ Y R+ + +SIP P+
Sbjct: 431 PIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPN 490
Query: 533 GKILRKDLIKLATS 546
GK+ RK L+ T+
Sbjct: 491 GKVDRKKLLSEVTA 504
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 96/374 (25%), Positives = 170/374 (45%), Gaps = 27/374 (7%)
Query: 190 INQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPM-FHIY 248
+ D+ ++Y+SG+TG KGV ++ L++ + + F L+ G Q F+ P F +
Sbjct: 141 VKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTG-QVFLNQAPFSFDLS 199
Query: 249 GLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYXXXXXXXXXXXXSGADQIR--- 305
+ + + L +G T+ + K +M++ A+ S A+
Sbjct: 200 VMDIYPS--LVTGGTLWAIDK----DMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEA 253
Query: 306 --SKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTES----TGIGASTDSL 359
S+ L ++++ L G L EV ++++PK I+ YG TE+ TGI + + L
Sbjct: 254 SFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVL 313
Query: 360 EESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATT---S 416
++ + G I+ D G + GE+ + GPS+ GY +PE T +
Sbjct: 314 DQYKSL-PVGYCKSDCRLLIMKED-GTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFT 371
Query: 417 TLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVV 476
+D E +TGD Y+ ++G +F RL IK GY++ E+E L + A +V
Sbjct: 372 MIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIV 430
Query: 477 PFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAP----YKRVRRVAFVASIPKNPS 532
P E Y +A VV S E ++ + +++ Y R+ + +SIP P+
Sbjct: 431 PIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPN 490
Query: 533 GKILRKDLIKLATS 546
GK+ RK L+ T+
Sbjct: 491 GKVDRKKLLSEVTA 504
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 127/497 (25%), Positives = 210/497 (42%), Gaps = 33/497 (6%)
Query: 62 TFSELWRAVDSVSTCLSD-MGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIIT--TTNPL 118
F EL + LS G+++G + ++ P + +V L + G I T
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 119 NTKQEIAKQIADSKPVLAF-TISQLVPKLAGS--TLPIVLLDDEKTTSTEGIKTVTTLPQ 175
+T Q++ +K ++A + Q V +A +L I LL EK S +G L
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEK--SCDGWLNFKKL-- 190
Query: 176 MMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGE 235
E S T + + + ++SGT+G K S+ +L + G L+ +
Sbjct: 191 --LNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASD 248
Query: 236 QTFICTVPMFHIYGLAAFATGLLASGSTIV-VLSKFDMHEMLSSISKYRATYXXXXXXXX 294
+ + + + L + T V +L KFD +L ++S Y
Sbjct: 249 IMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVY 308
Query: 295 XXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGA 354
Q S Y LQ+ ++ G L E +E + + + I + YG TE TG+
Sbjct: 309 RMLLQ---QDLSSYKFPHLQNCVTVGESLLPETLENW-RAQTGLDIRESYGQTE-TGLTC 363
Query: 355 STDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGP-----SIMKGYFS 409
S K G G + + +I+D D G L G++ ++ I GY
Sbjct: 364 MV-SKTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVD 421
Query: 410 NPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPK 469
NP+ T + + + WL GD D+DG+ + R ++I GY++ P+E+E L+ HP
Sbjct: 422 NPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPA 480
Query: 470 ISDAAVVPFPDKEAGQYPMAYVVREAGSRLSEN------EVMDFVARQVAPYKRVRRVAF 523
+ + AV+ PD G+ A+VV A LS + E+ V APYK R++ F
Sbjct: 481 VVETAVISSPDPVRGEVVKAFVVL-ASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEF 539
Query: 524 VASIPKNPSGKILRKDL 540
V ++PK +GKI R L
Sbjct: 540 VLNLPKTVTGKIQRAKL 556
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 127/497 (25%), Positives = 210/497 (42%), Gaps = 33/497 (6%)
Query: 62 TFSELWRAVDSVSTCLSD-MGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIIT--TTNPL 118
F EL + LS G+++G + ++ P + +V L + G I T
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 119 NTKQEIAKQIADSKPVLAF-TISQLVPKLAGS--TLPIVLLDDEKTTSTEGIKTVTTLPQ 175
+T Q++ +K ++A + Q V +A +L I LL EK S +G L
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEK--SCDGWLNFKKL-- 190
Query: 176 MMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGE 235
E S T + + + ++SGT+G K S+ +L + G L+ +
Sbjct: 191 --LNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASD 248
Query: 236 QTFICTVPMFHIYGLAAFATGLLASGSTIV-VLSKFDMHEMLSSISKYRATYXXXXXXXX 294
+ + + + L + T V +L KFD +L ++S Y
Sbjct: 249 IMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVY 308
Query: 295 XXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGA 354
Q S Y LQ+ ++ G L E +E + + + I + YG TE TG+
Sbjct: 309 RMLLQ---QDLSSYKFPHLQNCVTVGESLLPETLENW-RAQTGLDIRESYGQTE-TGLTC 363
Query: 355 STDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGP-----SIMKGYFS 409
S K G G + + +I+D D G L G++ ++ I GY
Sbjct: 364 MV-SKTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVD 421
Query: 410 NPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPK 469
NP+ T + + + WL GD D+DG+ + R ++I GY++ P+E+E L+ HP
Sbjct: 422 NPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPA 480
Query: 470 ISDAAVVPFPDKEAGQYPMAYVVREAGSRLSEN------EVMDFVARQVAPYKRVRRVAF 523
+ + AV+ PD G+ A+VV A LS + E+ V APYK R++ F
Sbjct: 481 VVETAVISSPDPVRGEVVKAFVVL-ASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEF 539
Query: 524 VASIPKNPSGKILRKDL 540
V ++PK +GKI R L
Sbjct: 540 VLNLPKTVTGKIQRAKL 556
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 122/510 (23%), Positives = 218/510 (42%), Gaps = 59/510 (11%)
Query: 56 ATGRHLTFSELWRAVDSVSTCLSDM--GIRKGHVILL--LSPNSIFFPVVCLAVMSLGAI 111
+ G+ LT+ ELW D + + G +K +++ + P+ I V L + G
Sbjct: 22 SQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMI---VSFLGSVKAGHP 78
Query: 112 ITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVT 171
+ + IAK I S ++L+ AG ++ V + I+TV+
Sbjct: 79 YIPVDLSIPSERIAKIIESSG-------AELLIHAAGLSIDAV---------GQQIQTVS 122
Query: 172 TLPQMMRKEPSGTLVRDR-INQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFK 230
+++ E G++ +D+ + + + ++Y+SG+TG KGV S NL + + F
Sbjct: 123 A-EELLENE-GGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFP 180
Query: 231 LEDGEQTFICTVPM-FHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYXXX 289
+ G + F+ P F + + + L SG T+ ++K +++K + +
Sbjct: 181 VSGG-KIFLNQAPFSFDLSVMDLYPC--LQSGGTLHCVTK-------DAVNKPKVLFEEL 230
Query: 290 XXXXXXXXXSGADQIR--------SKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRIL 341
S ++ S+ L + + G L V + ++++PK +I
Sbjct: 231 KKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIF 290
Query: 342 QGYGLTEST----GIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELW 397
YG TE+T + + D + S G P M I+D + G+ L + GE+
Sbjct: 291 NTYGPTEATVAVTSVEITNDVISRSESL-PVGFAKPDMNIFIMD-EEGQPLPEGEKGEIV 348
Query: 398 LKGPSIMKGYFSNPEATTSTLDS-EG-W-LRTGDLCYIDDDGFIFIVDRLKELIKYKGYQ 454
+ GPS+ +GY PE T S EG W RTGD +I D G IF RL IK GY+
Sbjct: 349 IAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQD-GQIFCQGRLDFQIKLHGYR 407
Query: 455 VPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVA- 513
+ E+E + + A V+P+ +Y +A +V E E ++ + +++A
Sbjct: 408 MELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAA 467
Query: 514 ---PYKRVRRVAFVASIPKNPSGKILRKDL 540
Y R+ + I +GKI RK +
Sbjct: 468 SLPAYMIPRKFIYQDHIQMTANGKIDRKRI 497
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 127/519 (24%), Positives = 217/519 (41%), Gaps = 59/519 (11%)
Query: 49 RTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKG-HVILLLSPNSIFFPVVCLAVMS 107
RTA +A +++ L D+V+ L G+R G V L +SP + V LA++
Sbjct: 51 RTAL--SAEDDRISYGRLDAWSDAVARTLLAEGVRPGDRVALRMSPGAEAI-VAILAILK 107
Query: 108 LGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGI 167
GA P++ + +++ S + LA S ++ + + + +
Sbjct: 108 CGAAYV---PVDLRNPVSR-------------SDFI--LADSGASALIGEPHEGCAVTRV 149
Query: 168 KTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLG 227
+ + EP +D+A ++Y+SGTTG KGV H N++A++
Sbjct: 150 VRTAAVAECKDAEPGPVTGAPGPGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPS 209
Query: 228 RFKLEDGEQTFIC-----TVPMFHIYGLAAFATGLLASGSTIVVLSKFDM---HEMLSSI 279
F ++ + ++ I+G AF+TG + +VVL + + L+ I
Sbjct: 210 VFDFSGDDRWLLFHSLSFDFSVWEIWG--AFSTG-----AELVVLPHWAARTPEQYLAVI 262
Query: 280 SKYRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGG----APLSREVIEGFVQKY 335
T A +R D+S L+ V+ GG AP+ R + F
Sbjct: 263 IDRGVTVINQTPTAFLALTEAA--VRGGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDR 320
Query: 336 PKVRILQGYGLTESTGIGASTDSLEE--SRKYGTAGMLSPSMEAKIVDPDSGKALLVNQT 393
P R++ GYG+TE+T + E ++ G PS ++V D G+ + +T
Sbjct: 321 P--RLVNGYGITETTVFTTFEEITEAYLAQDASIIGRALPSFGTRVVG-DDGRDVAPGET 377
Query: 394 GELWLKGPSIMKGYFSNPEATTS---------TLDSEGWLRTGDLCYIDDDGFIFIVDRL 444
GELWL G + +GY PE T T +S + RTGDL DG R
Sbjct: 378 GELWLSGAQLAEGYLRRPELTAEKFPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRA 437
Query: 445 KELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAG-QYPMAYVVREAGSRLSENE 503
IK +GY++ +++E + H + DA V K + AYV RE GS + E
Sbjct: 438 DLQIKLRGYRIELSDIETAVRRHDDVVDAVVTVREFKPGDLRLVCAYVARE-GSATTARE 496
Query: 504 VMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIK 542
+ + + + Y R + +P+ +GK+ R + +
Sbjct: 497 LRNHIKTLLPAYMHPARYLPLPGLPRTVNGKVDRAAVAR 535
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 111/505 (21%), Positives = 198/505 (39%), Gaps = 53/505 (10%)
Query: 57 TGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTN 116
+G+ L++ EL + ++ L G KG V+ L + S+ + L V+ GA +
Sbjct: 486 SGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVD 545
Query: 117 PLNTKQEIAKQIADSKPVLAFTISQLVPKLA-----GSTLPIVLLDDEKTTSTEGIKTVT 171
P + I+ +ADS T ++ + A G+TL +DD+ + T
Sbjct: 546 PKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTL---FIDDQTRFEEQASDPAT 602
Query: 172 TLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKL 231
I+ +D A ++Y+SGTTG KG +++H N+ +V+ V +
Sbjct: 603 A-----------------IDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHV--DYMA 643
Query: 232 EDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSS-------ISKYRA 284
+ TF+ Y AF AS L D H +L + + +
Sbjct: 644 FSDQDTFLSVSN----YAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVN 699
Query: 285 TYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGY 344
+G D ++ L+ +L GG S + ++ +++ Y
Sbjct: 700 VMFATTALFNLLTDAGEDWMKG------LRCILFGGERASVPHVRKALRIMGPGKLINCY 753
Query: 345 GLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALL-VNQTGELWLKGPSI 403
G TE T + + + + P A + + L GEL + G +
Sbjct: 754 GPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGV 813
Query: 404 MKGYFSNPEATTSTL------DSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPP 457
KGY + + T E RTGDL DG I R+ + +K +G+++
Sbjct: 814 SKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIEL 873
Query: 458 AELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKR 517
E+E L +P + DA VV + AY+V ++LS +V + +Q+ Y
Sbjct: 874 EEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNR--TQLSAEDVKAHLKKQLPAYMV 931
Query: 518 VRRVAFVASIPKNPSGKILRKDLIK 542
+ F+ +P +GK+ ++ L K
Sbjct: 932 PQTFTFLDELPLTTNGKVNKRLLPK 956
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 170/405 (41%), Gaps = 52/405 (12%)
Query: 181 PSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTV-LGRFKLEDGEQTFI 239
P + R +D+A L Y+SG+T +GV+ +HR + A ++ + KL G++ +
Sbjct: 163 PEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRC-V 221
Query: 240 CTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMH----EMLSSISKYRATYXXXXXXXXX 295
+P +H GL F +A+ ++ L D + L ISK R T
Sbjct: 222 SWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTVSVAPPFGYE 281
Query: 296 XXXSGADQIR-SKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRI-----LQGYGLTES 349
++ ++ DLS + G P+S E + F + + +V YGL E+
Sbjct: 282 LCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAEN 341
Query: 350 T--------GIGASTDSLEESRKYGTAGMLSPSMEAKIVDP--DSGKAL------LVNQT 393
G + ++ ++P E + V + GKAL + N+
Sbjct: 342 ALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEA 401
Query: 394 G---------ELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRL 444
G + + GPS+ GYF + + + + + GWL TGDL Y+ D G++++ R+
Sbjct: 402 GXPVAERVVGHICISGPSLXSGYFGD-QVSQDEIAATGWLDTGDLGYLLD-GYLYVTGRI 459
Query: 445 KELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENE- 503
K+LI +G + P ++E + P+I + F + ++ + R+S+ E
Sbjct: 460 KDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEK------IILQIQCRISDEER 513
Query: 504 ----VMDFVARQVAPYKRVRRVAFVA--SIPKNPSGKILRKDLIK 542
+ AR + + + + SIP+ SGK R + K
Sbjct: 514 RGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKK 558
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 109/492 (22%), Positives = 201/492 (40%), Gaps = 39/492 (7%)
Query: 58 GRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNP 117
LT+ EL + ++ + GI K ++ ++ SI + LAV+ G +
Sbjct: 62 NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDI 121
Query: 118 LNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTL--PIVLLDDEKTTSTEGIKTVTTLPQ 175
K+ I + DS+ + T LV + + + +++ EG T L
Sbjct: 122 EYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREG----TNL-- 175
Query: 176 MMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGE 235
PS + D+A ++Y+SGTTG KG + H+ + + V L E
Sbjct: 176 ---HVPSKS--------TDLAYVIYTSGTTGNPKGTMLEHKGISNL--KVFFENSLNVTE 222
Query: 236 QTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYXXXXXXXXX 295
+ I L +G+++ ++ K +++ + +Y
Sbjct: 223 KDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVK-FEQYINQKEITVITLPP 281
Query: 296 XXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGAS 355
D R + S+Q++++ G+ S ++ + +K V + YG TE+T +
Sbjct: 282 TYVVHLDPER----ILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATT 334
Query: 356 TDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALL-VNQTGELWLKGPSIMKGYFSNPEAT 414
+ +E+ + + + +P +I D L V + GEL + G + +GY+ PE T
Sbjct: 335 WVATKETIGH-SVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELT 393
Query: 415 TST------LDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHP 468
+ + E +TGD DG I + R+ +K +G++V E+E++LL H
Sbjct: 394 SQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHM 453
Query: 469 KISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIP 528
IS+ AV D + Y AY V E L ++ F + ++ Y + +P
Sbjct: 454 YISETAVSVHKDHQEQPYLCAYFVSEKHIPLE--QLRQFSSEELPTYMIPSYFIQLDKMP 511
Query: 529 KNPSGKILRKDL 540
+GKI RK L
Sbjct: 512 LTSNGKIDRKQL 523
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 93/396 (23%), Positives = 161/396 (40%), Gaps = 42/396 (10%)
Query: 61 LTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLNT 120
LT+ L + ++ L +G+ G ++ + V LAV+ G T +P
Sbjct: 101 LTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFP 160
Query: 121 KQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKE 180
+ +A + D+ L T L +L G+T + ++DE +
Sbjct: 161 VERLALSLEDTGAPLLVTSRPLSGRLTGTT--TLYVEDEAASDA---------------- 202
Query: 181 PSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDG-EQTFI 239
P+G L + +DVA ++++SG+TG KGV+S HR A+ T LG+ G ++ F+
Sbjct: 203 PAGNLATG-VGPEDVACVMFTSGSTGRPKGVMSPHR---ALTGTYLGQDYAGFGPDEVFL 258
Query: 240 -CTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYXXXXXXXXXXXX 298
C+ + +GL F L + + D E+ ++++ T
Sbjct: 259 QCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFL- 317
Query: 299 SGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDS 358
D++ ++ ++ ++GG P S + + +P +R+ GYG ES G + +
Sbjct: 318 --VDEVPEAFE--GVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGF-TTHHA 372
Query: 359 LEESRKYGTA---GMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATT 415
+ GTA G+ A ++D D K GEL++ G + GY S P T
Sbjct: 373 VVAGDLSGTALPIGVPLAGKRAYVLDDDL-KPAANGALGELYVAGAGLAHGYVSRPALTA 431
Query: 416 STL--------DSEGWLRTGDLCYIDDDGFIFIVDR 443
E RTGDL DG + V R
Sbjct: 432 ERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/440 (23%), Positives = 168/440 (38%), Gaps = 75/440 (17%)
Query: 61 LTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLN- 119
LT+S+L+R +V+ LS G G +++ +P + + V L + G I PL+
Sbjct: 59 LTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAV---PLSV 114
Query: 120 -----TKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLP 174
T + ++DS PV T S V + + E ++ +
Sbjct: 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDV---------VQHVARRPGESPPSIIEVD 165
Query: 175 QMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNL-IAMVQTVLGRFKLED 233
+ P+G ++ A L Y+SG+T GVV SH+N+ + Q + G F D
Sbjct: 166 LLDLDAPNGYTFKED-EYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTD 224
Query: 234 G----EQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFD--------MHEMLSSISK 281
G + +P +H GL + G V+ S MH M S
Sbjct: 225 GIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA 284
Query: 282 YRATYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRIL 341
+ A D + DL ++ ++LSG + I+ F ++ + +
Sbjct: 285 FSAAPNFAFELAARRT---TDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQ 341
Query: 342 Q-----GYGLTESTGIGAS-------------TDSLEESRKYGTAG---------MLSPS 374
+ Y L E+T A+ T+SL AG ML S
Sbjct: 342 ERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS 401
Query: 375 MEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDS----------EG-W 423
+IVD D+ GE+W+ G ++ GY+ P+ + T EG W
Sbjct: 402 PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPW 461
Query: 424 LRTGDLCYIDDDGFIFIVDR 443
LRTGD ++ DG +FI+ R
Sbjct: 462 LRTGDSGFV-TDGKMFIIGR 480
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 99/437 (22%), Positives = 164/437 (37%), Gaps = 69/437 (15%)
Query: 61 LTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLN- 119
LT+S+L+R +V+ LS G G +++ +P + + V L + G I PL+
Sbjct: 59 LTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAV---PLSV 114
Query: 120 -----TKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLP 174
T + ++DS PV T S V + + E ++ +
Sbjct: 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDV---------VQHVARRPGESPPSIIEVD 165
Query: 175 QMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNL-IAMVQTVLGRFKLED 233
+ P+G ++ A L Y+SG+T GVV SH+N+ + Q G F D
Sbjct: 166 LLDLDAPNGYTFKED-EYPSTAYLQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFADTD 224
Query: 234 G----EQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLS-----SISKYRA 284
G + +P +H GL + G V+ S + + S + A
Sbjct: 225 GIPPPNSALVSWLPFYHDXGLVIGICAPILGGYPAVLTSPVSFLQRPARWXHLXASDFHA 284
Query: 285 TYXXXXXXXXXXXXSGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQ-- 342
D + DL ++ ++LSG + I+ F ++ + + +
Sbjct: 285 FSAAPNFAFELAARRTTDDDXAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERV 344
Query: 343 ---GYGLTEST-------------GIGASTDSLEESRKYGTAG---------MLSPSMEA 377
YGL E+T + T+SL AG L S
Sbjct: 345 IRPSYGLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYXLPRSPIV 404
Query: 378 KIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDS----------EG-WLRT 426
+IVD D+ GE+W+ G ++ GY+ P+ + T EG WLRT
Sbjct: 405 RIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRT 464
Query: 427 GDLCYIDDDGFIFIVDR 443
GD ++ DG FI+ R
Sbjct: 465 GDSGFV-TDGKXFIIGR 480
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 86/378 (22%), Positives = 146/378 (38%), Gaps = 42/378 (11%)
Query: 184 TLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQT-FICTV 242
++ R D +A + +SSGTTG K + +H + + LG+ L Q F+
Sbjct: 155 SVARPCFAADQIAYINFSSGTTGRPKAIACTH---AGITRLCLGQSFLAFAPQMRFLVNS 211
Query: 243 PMFHIYGLAAFATGLLASGSTIVV-LSKFDMHEMLSSISKYRATYXXXXXXXXXXXXSGA 301
P+ LL G ++ L D + I + A
Sbjct: 212 PLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD 271
Query: 302 DQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGA----STD 357
L L+ +L+GG LS + + ++P++ ++ GYG TE+T + D
Sbjct: 272 PDC-----LGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDD 326
Query: 358 SLEES------RKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNP 411
LEE GTA +L +I +PD + GE+ G + +GY ++
Sbjct: 327 DLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPD--------RAGEIVAFGAGLAQGYRNDA 378
Query: 412 EATTST---LDSEGWL----RTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALL 464
T ++ L G L RTGD D+ G + + R +K GY++ LE
Sbjct: 379 ARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRF 438
Query: 465 LTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFV 524
P I D A++ Q A+ + S + + RQ+ ++R V
Sbjct: 439 RRQPGILDCALLVRERNGVKQLLCAWTGKADASPQA-------LLRQLPTWQRPHACVRV 491
Query: 525 ASIPKNPSGKILRKDLIK 542
++P GK+ R L++
Sbjct: 492 EALPLTAHGKLDRAALLR 509
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 111/309 (35%), Gaps = 38/309 (12%)
Query: 196 ATLLYSSGTTGASKGVVSSHRNLIA-------MVQTVLGRFKLEDGEQTFICTVP-MFHI 247
A LLY+SG+TG KGV S NL + ++ V + G F+C F +
Sbjct: 178 AYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDV 237
Query: 248 Y---GLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYXXXXXXXXXXXXSGADQI 304
+ A+ GL A E LS + T+ S DQ
Sbjct: 238 HIGEXFLAWRFGLCAV-----------TGERLSXLDDLPRTFRELGVTHAGIVPSLLDQT 286
Query: 305 RSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRK 364
+ + L G + +V ++ YG TE T IG S +
Sbjct: 287 GLVPEDAPHLVYLGVGGEKXTPRTQQIWSSSDRVALVNVYGPTEVT-IGCSAGRILPDSD 345
Query: 365 YGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATT-STLDSEGW 423
G A ++ P S + + GEL ++G + GY + P+A ++
Sbjct: 346 TRCIGHPLGDSVAHVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDAKGFCDINGRKX 405
Query: 424 LRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELE--------------ALLLTHPK 469
RTGD+ D D I + R E +K +G ++ E+ LLL HP
Sbjct: 406 YRTGDIVRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPG 465
Query: 470 ISDAAVVPF 478
S +V F
Sbjct: 466 TSKQFLVSF 474
>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate
pdb|2Y4N|B Chain B, Paak1 In Complex With Phenylacetyl Adenylate
Length = 437
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 32/222 (14%)
Query: 190 INQDDVATLLYSSGTTGASKGV------VSSHRNLIAMVQTVLGRFKLEDGEQTFICTVP 243
+ QD ++ + SSGTTG V + + NL+A G + G++ +
Sbjct: 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARR---GDKVHVS--- 140
Query: 244 MFHIYGLAAFATGLLA------SGSTIVVLSKFDMHEMLSSISKYRATYXXXXXXXXXXX 297
YG F GL A +G T++ + + I +R
Sbjct: 141 ----YGYGLFTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPD---IIMVTPSYM 193
Query: 298 XSGADQI-RSKYD--LSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGA 354
S AD+I R D SSL+ + G P + ++ Q+ + + YGL+E G G
Sbjct: 194 LSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSEVMGPGV 252
Query: 355 STDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGEL 396
+++ +E K G + +I+DP++G+ L + GEL
Sbjct: 253 ASECVET--KDGPT-IWEDHFYPEIIDPETGEVLPDGELGEL 291
>pdb|2Y27|A Chain A, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
pdb|2Y27|B Chain B, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
Length = 437
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 32/222 (14%)
Query: 190 INQDDVATLLYSSGTTGASKGV------VSSHRNLIAMVQTVLGRFKLEDGEQTFICTVP 243
+ QD ++ + SSGTTG V + + NL+A G + G++ +
Sbjct: 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARR---GDKVHVS--- 140
Query: 244 MFHIYGLAAFATGLLA------SGSTIVVLSKFDMHEMLSSISKYRATYXXXXXXXXXXX 297
YG F GL A +G T++ + + I +R
Sbjct: 141 ----YGYGLFTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPD---IIXVTPSYX 193
Query: 298 XSGADQI-RSKYD--LSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGA 354
S AD+I R D SSL+ + G P + + Q+ + + YGL+E G G
Sbjct: 194 LSIADEIERQGLDPVQSSLRIGIFGAEPWTNDXRVAIEQRX-GIDAVDIYGLSEVXGPGV 252
Query: 355 STDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGEL 396
+++ +E K G + +I+DP++G+ L + GEL
Sbjct: 253 ASECVET--KDGPT-IWEDHFYPEIIDPETGEVLPDGELGEL 291
>pdb|3HGU|A Chain A, Structure Of Phenazine Antibiotic Biosynthesis Protein
pdb|3HGU|B Chain B, Structure Of Phenazine Antibiotic Biosynthesis Protein
Length = 369
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 125 AKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQM------MR 178
A QI D+ + + K GS + + + + +KT+ L Q +R
Sbjct: 17 AAQINDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDLRQFSDISHCLR 76
Query: 179 KEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDG 234
+EP LV + D + S GTTGA K VV+ + A++ + ++ G
Sbjct: 77 QEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPG 132
>pdb|3L2K|A Chain A, Structure Of Phenazine Antibiotic Biosynthesis Protein
With Substrate
pdb|3L2K|B Chain B, Structure Of Phenazine Antibiotic Biosynthesis Protein
With Substrate
Length = 366
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 125 AKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQM------MR 178
A QI D+ + + K GS + + + + +KT+ L Q +R
Sbjct: 14 AAQINDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDLRQFSDISHCLR 73
Query: 179 KEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDG 234
+EP LV + D + S GTTGA K VV+ + A++ + ++ G
Sbjct: 74 QEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPG 129
>pdb|3BIY|A Chain A, Crystal Structure Of P300 Histone Acetyltransferase Domain
In Complex With A Bisubstrate Inhibitor, Lys-Coa
Length = 380
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 28 SLPPNESLDVTTFISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDM 80
SLPP +D I GR AF+ A RHL FS L RA S L ++
Sbjct: 322 SLPP--IVDPDPLIPCDLMDGRDAFLTLARDRHLEFSSLRRAQWSTGCMLVEL 372
>pdb|3VE0|I Chain I, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Boniface) Bound To 16f6
Length = 298
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Query: 427 GDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQY 486
GD + DG F+ DRL + Y+G + L+L PK + + P +EA Y
Sbjct: 134 GDYAF-HKDGAFFLYDRLASTVIYRGVNFAEGVIAFLILAKPK--ETFLQSPPIREAVNY 190
Query: 487 PMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFV-ASIPKNPSGKILRKDLIKL 543
A S L E E+ +F A+ ++ FV P P D I L
Sbjct: 191 TENTSSYYATSYL-EYEIENFGAQHSTTLFKINNNTFVLLDRPHTPQFLFQLNDTIHL 247
>pdb|1VRQ|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96 In Complex With Folinic
Acid
pdb|1X31|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96
pdb|3AD7|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Methylthio Acetate
pdb|3AD8|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Pyrrole 2-Carboxylate
pdb|3AD9|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 Sarcosine-Reduced Form
pdb|3ADA|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Sulfite
Length = 964
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 11/159 (6%)
Query: 12 GFCKSNSIFYSKRKPVSL--PPNESLDVTTFISSRAHHGRTAFIDAATGRHLTFSELWRA 69
G +N I ++R+ V L P + + RA + AA R + F R
Sbjct: 206 GSYDANYILAAQRRTVHLDGPSGQGVSRERIWHIRAK--QVVLATAAHERPIVFENNDRP 263
Query: 70 ----VDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLNTKQEIA 125
SV + L+ G+R G I + + N +P+V S G + N A
Sbjct: 264 GIMLAGSVRSYLNRFGVRAGSKIAVATTNDSVYPLVSELAASGGVVAVIDARQNISAAAA 323
Query: 126 KQIADSKPVLAFTISQLVPKLAGSTLPIVL---LDDEKT 161
+ + D VL ++ A L VL LD+++
Sbjct: 324 QAVTDGVTVLTGSVVANTEADASGELSAVLVATLDEQRN 362
>pdb|3HGV|A Chain A, Structure Of Phenazine Antibiotic Biosynthesis Protein
pdb|3HGV|B Chain B, Structure Of Phenazine Antibiotic Biosynthesis Protein
Length = 369
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 125 AKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQM------MR 178
A QI D+ + K GS + + + +KT+ L Q +R
Sbjct: 17 AAQINDTNNFVQALXRWHFSKETGSPFWLGXREQLNFDPIKDVKTINDLRQFSDISHCLR 76
Query: 179 KEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMV 222
+EP LV + D + S GTTGA K VV+ + A++
Sbjct: 77 QEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALI 120
>pdb|3VQR|A Chain A, Structure Of A Dye-Linked L-Proline Dehydrogenase Mutant
From The Aerobic Hyperthermophilic Archaeon, Aeropyrum
Pernix
pdb|3VQR|B Chain B, Structure Of A Dye-Linked L-Proline Dehydrogenase Mutant
From The Aerobic Hyperthermophilic Archaeon, Aeropyrum
Pernix
Length = 447
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 20/103 (19%)
Query: 425 RTGDLCYIDDDGFIFIVDR-----LKELIKYKGYQ------VPPAELEALLLTHPKISD- 472
R G+ + G++F+ DR ++E ++ G + +PP ELE L + ++SD
Sbjct: 96 RGGEDLGLVKSGYLFVYDRERWREVEEPLREAGEEGRDYLIIPPEELERRLGMNTRVSDG 155
Query: 473 --AAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVA 513
A V+ D E A ++R AG L +V+D+ R+ +
Sbjct: 156 EEAEVLGVGDVEG-----AVLIRSAGF-LDAEKVVDYYYRRAS 192
>pdb|3AXB|A Chain A, Structure Of A Dye-Linked L-Proline Dehydrogenase From The
Aerobic Hyperthermophilic Archaeon, Aeropyrum Pernix
Length = 448
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 20/103 (19%)
Query: 425 RTGDLCYIDDDGFIFIVDR-----LKELIKYKGYQ------VPPAELEALLLTHPKISD- 472
R G+ + G++F+ DR ++E ++ G + +PP ELE L + ++SD
Sbjct: 96 RGGEDLGLVKSGYLFVYDRERWREVEEPLREAGEEGRDYLIIPPEELERRLGXNTRVSDG 155
Query: 473 --AAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVA 513
A V+ D E A ++R AG L +V+D+ R+ +
Sbjct: 156 EEAEVLGVGDVEG-----AVLIRSAGF-LDAEKVVDYYYRRAS 192
>pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3S89|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
Length = 436
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 35/173 (20%)
Query: 311 SSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGM 370
++L++++ G P + E +++ V+ +G TE G G + + E++ +
Sbjct: 206 TTLKTLVIGAEPHTDEQRRK-IERXLNVKAYNSFGXTEXNGPGVAFECQEQNGXH----F 260
Query: 371 LSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGW----LRT 426
+I+DP++G+ + + GEL L +TLD E RT
Sbjct: 261 WEDCYLVEIIDPETGEPVPEGEIGELVL-----------------TTLDREXXPLIRYRT 303
Query: 427 GDLCYIDDD----GFIFI-VDRLK----ELIKYKGYQVPPAELEALLLTHPKI 470
DL I G + +DR+K + KG + P ++E +L+ P++
Sbjct: 304 RDLTRILPGKCPCGRTHLRIDRIKGRSDDXFIIKGVNIFPXQVEKILVQFPEL 356
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,976,446
Number of Sequences: 62578
Number of extensions: 589055
Number of successful extensions: 1610
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1372
Number of HSP's gapped (non-prelim): 98
length of query: 548
length of database: 14,973,337
effective HSP length: 104
effective length of query: 444
effective length of database: 8,465,225
effective search space: 3758559900
effective search space used: 3758559900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)