Query 008946
Match_columns 548
No_of_seqs 196 out of 2333
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 15:18:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 1E-82 3.6E-87 663.0 48.7 518 17-546 6-535 (536)
2 2d1s_A Luciferase, luciferin 4 100.0 2.9E-79 9.8E-84 638.0 47.7 503 35-548 25-545 (548)
3 4fuq_A Malonyl COA synthetase; 100.0 6.6E-79 2.2E-83 629.0 46.1 484 46-547 13-501 (503)
4 3g7s_A Long-chain-fatty-acid-- 100.0 6.2E-79 2.1E-83 636.5 43.0 500 35-546 19-542 (549)
5 3rix_A Luciferase, luciferin 4 100.0 2.6E-79 9E-84 639.4 37.7 520 18-547 6-542 (550)
6 3r44_A Fatty acyl COA syntheta 100.0 1.2E-78 4E-83 629.3 41.8 497 30-548 11-515 (517)
7 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.4E-78 8.4E-83 630.1 42.4 494 35-548 25-533 (539)
8 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.7E-77 9.3E-82 617.9 46.2 491 35-545 2-503 (504)
9 1pg4_A Acetyl-COA synthetase; 100.0 2.3E-77 7.9E-82 635.0 45.9 509 36-547 77-622 (652)
10 3tsy_A Fusion protein 4-coumar 100.0 2.9E-78 1E-82 671.8 40.4 532 11-547 39-583 (979)
11 3etc_A AMP-binding protein; ad 100.0 1.5E-76 5.1E-81 620.3 45.7 499 35-547 55-580 (580)
12 3o83_A Peptide arylation enzym 100.0 4E-78 1.4E-82 629.2 31.8 496 35-547 30-541 (544)
13 3fce_A D-alanine--poly(phospho 100.0 1.3E-76 4.3E-81 614.4 40.9 490 35-547 1-505 (512)
14 1ry2_A Acetyl-coenzyme A synth 100.0 2.1E-76 7.2E-81 627.7 43.0 512 35-547 82-638 (663)
15 3rg2_A Enterobactin synthase c 100.0 8.4E-76 2.9E-80 620.6 46.8 495 35-546 27-534 (617)
16 3e7w_A D-alanine--poly(phospho 100.0 8.2E-76 2.8E-80 607.9 44.7 487 35-546 1-503 (511)
17 1v25_A Long-chain-fatty-acid-C 100.0 9.9E-77 3.4E-81 618.3 36.8 497 34-548 17-538 (541)
18 3ivr_A Putative long-chain-fat 100.0 6.7E-77 2.3E-81 616.0 33.8 488 34-547 5-502 (509)
19 1amu_A GRSA, gramicidin synthe 100.0 1.9E-75 6.4E-80 610.3 42.9 487 21-544 27-527 (563)
20 4gr5_A Non-ribosomal peptide s 100.0 4.4E-76 1.5E-80 617.4 36.1 480 34-543 74-568 (570)
21 3l8c_A D-alanine--poly(phospho 100.0 3.5E-75 1.2E-79 605.3 40.0 490 35-547 4-513 (521)
22 4dg8_A PA1221; ANL superfamily 100.0 5.3E-75 1.8E-79 611.7 39.8 476 33-546 25-513 (620)
23 2v7b_A Benzoate-coenzyme A lig 100.0 2.9E-74 9.9E-79 599.2 44.4 498 30-543 19-529 (529)
24 3ipl_A 2-succinylbenzoate--COA 100.0 1.3E-74 4.6E-79 597.9 40.2 487 36-546 2-497 (501)
25 3nyq_A Malonyl-COA ligase; A/B 100.0 3.3E-75 1.1E-79 601.3 35.2 475 35-543 22-505 (505)
26 3c5e_A Acyl-coenzyme A synthet 100.0 3.6E-74 1.2E-78 601.5 43.1 493 36-546 39-562 (570)
27 2vsq_A Surfactin synthetase su 100.0 4.9E-71 1.7E-75 628.6 43.2 491 20-543 452-957 (1304)
28 3ite_A SIDN siderophore synthe 100.0 7.1E-72 2.4E-76 585.5 31.9 493 32-546 17-543 (562)
29 3kxw_A Saframycin MX1 syntheta 100.0 8.5E-72 2.9E-76 589.3 30.0 493 34-547 10-568 (590)
30 3gqw_A Fatty acid AMP ligase; 100.0 7.8E-71 2.7E-75 580.7 37.0 496 31-547 17-564 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 1.1E-57 3.8E-62 469.6 25.9 388 34-443 23-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 6.6E-53 2.3E-57 414.1 21.9 316 192-547 36-355 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 1.9E-49 6.6E-54 402.2 24.8 331 190-540 82-431 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 5.4E-49 1.9E-53 399.7 19.0 332 190-542 89-440 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 2.5E-48 8.4E-53 394.2 21.8 329 190-540 87-433 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 1E-30 3.4E-35 258.7 17.9 239 190-453 88-368 (369)
37 3gxs_A Phenylacetate-coenzyme 99.5 1.8E-14 6E-19 114.1 7.1 95 442-538 1-102 (109)
38 3lax_A Phenylacetate-coenzyme 99.5 3.5E-14 1.2E-18 112.7 7.9 96 442-538 1-102 (109)
39 4eql_A 4-substituted benzoates 99.2 1.9E-10 6.6E-15 116.5 14.4 161 310-493 296-480 (581)
40 4b2g_A GH3-1 auxin conjugating 99.1 4E-10 1.4E-14 114.3 11.2 162 310-494 301-493 (609)
41 4epl_A Jasmonic acid-amido syn 99.0 1.6E-09 5.4E-14 109.5 13.4 160 310-494 301-488 (581)
42 2y27_A Phenylacetate-coenzyme 90.4 1 3.5E-05 44.4 9.5 86 60-146 109-196 (437)
43 2y4o_A Phenylacetate-coenzyme 89.8 1.2 4E-05 44.1 9.4 86 60-146 111-198 (443)
44 3qov_A Phenylacetate-coenzyme 89.1 1.3 4.4E-05 43.7 9.1 86 60-146 105-192 (436)
45 3hgu_A EHPF; phenazine, antibi 71.7 6.1 0.00021 37.7 6.3 85 60-146 110-219 (369)
46 3ipl_A 2-succinylbenzoate--COA 69.7 22 0.00077 35.3 10.3 84 59-146 181-265 (501)
47 2d1s_A Luciferase, luciferin 4 67.1 14 0.00048 37.4 8.2 86 59-146 210-297 (548)
48 1mdb_A 2,3-dihydroxybenzoate-A 63.9 43 0.0015 33.6 11.1 84 59-146 200-286 (539)
49 3o83_A Peptide arylation enzym 62.1 42 0.0014 33.7 10.6 83 59-145 209-294 (544)
50 3r44_A Fatty acyl COA syntheta 57.1 48 0.0016 33.1 10.0 83 59-146 188-272 (517)
51 3fce_A D-alanine--poly(phospho 56.6 29 0.00099 34.6 8.2 85 59-146 162-249 (512)
52 3ivr_A Putative long-chain-fat 55.8 74 0.0025 31.5 11.1 94 191-296 19-116 (509)
53 3rix_A Luciferase, luciferin 4 50.3 26 0.00088 35.4 6.7 87 59-146 208-295 (550)
54 3rg2_A Enterobactin synthase c 48.3 1.2E+02 0.0039 31.1 11.4 83 59-145 202-287 (617)
55 3ni2_A 4-coumarate:COA ligase; 48.2 92 0.0031 31.1 10.4 95 191-295 35-133 (536)
56 3e7w_A D-alanine--poly(phospho 48.2 32 0.0011 34.3 7.0 85 59-146 161-248 (511)
57 1v25_A Long-chain-fatty-acid-C 45.9 1.1E+02 0.0036 30.7 10.5 99 191-297 31-133 (541)
58 3kxw_A Saframycin MX1 syntheta 45.9 49 0.0017 33.6 8.1 83 59-144 185-272 (590)
59 3g7s_A Long-chain-fatty-acid-- 44.8 1.4E+02 0.0047 29.9 11.2 102 191-297 32-138 (549)
60 3c5e_A Acyl-coenzyme A synthet 43.4 90 0.0031 31.5 9.5 85 60-147 225-312 (570)
61 1t5h_X 4-chlorobenzoyl COA lig 42.6 59 0.002 32.2 7.9 83 60-146 172-258 (504)
62 1amu_A GRSA, gramicidin synthe 40.9 87 0.003 31.6 8.9 86 59-147 200-288 (563)
63 2cvi_A 75AA long hypothetical 36.5 1.1E+02 0.0036 21.3 6.7 50 457-516 15-64 (83)
64 3nyq_A Malonyl-COA ligase; A/B 35.3 1.6E+02 0.0054 29.1 9.7 83 59-146 173-257 (505)
65 3ezx_A MMCP 1, monomethylamine 35.2 2.1E+02 0.0073 24.4 11.3 91 235-330 93-194 (215)
66 4gs5_A Acyl-COA synthetase (AM 34.6 57 0.0019 30.7 5.9 79 60-144 56-135 (358)
67 3etc_A AMP-binding protein; ad 34.2 1.6E+02 0.0054 29.8 9.6 94 191-291 69-166 (580)
68 3t5a_A Long-chain-fatty-acid-- 34.0 1.4E+02 0.0047 29.1 9.0 105 191-300 37-149 (480)
69 4gr5_A Non-ribosomal peptide s 33.4 1.1E+02 0.0038 30.8 8.3 84 59-146 232-317 (570)
70 1ry2_A Acetyl-coenzyme A synth 31.7 2.4E+02 0.0083 29.0 10.7 96 191-291 95-194 (663)
71 2v7b_A Benzoate-coenzyme A lig 31.2 1.4E+02 0.0049 29.5 8.7 81 212-295 48-132 (529)
72 3tbh_A O-acetyl serine sulfhyd 31.0 1.2E+02 0.0041 28.1 7.5 64 78-141 63-127 (334)
73 4fuq_A Malonyl COA synthetase; 27.7 2E+02 0.0068 28.3 8.9 78 212-292 28-109 (503)
74 3ju7_A Putative PLP-dependent 25.6 1.3E+02 0.0045 28.3 6.9 60 77-139 70-136 (377)
75 2zbc_A 83AA long hypothetical 25.5 1.6E+02 0.0056 20.1 6.9 50 457-516 15-64 (83)
76 3tsy_A Fusion protein 4-coumar 25.3 2.6E+02 0.0089 30.4 10.0 93 191-293 74-170 (979)
77 3vc3_A Beta-cyanoalnine syntha 24.8 1.5E+02 0.005 27.7 6.8 69 72-140 73-141 (344)
78 4dg8_A PA1221; ANL superfamily 24.2 1.2E+02 0.004 31.1 6.6 96 59-158 182-285 (620)
79 2djw_A Probable transcriptiona 24.0 1.6E+02 0.0055 20.8 5.6 50 457-516 15-64 (92)
80 3ite_A SIDN siderophore synthe 24.0 1.8E+02 0.0063 29.0 8.0 86 60-145 194-285 (562)
81 1pg4_A Acetyl-COA synthetase; 23.2 4.5E+02 0.015 26.8 10.9 95 191-291 89-187 (652)
82 4h1h_A LMO1638 protein; MCCF-l 23.0 2.7E+02 0.0092 25.7 8.2 60 81-140 8-86 (327)
83 2jtq_A Phage shock protein E; 22.5 1.3E+02 0.0045 20.8 4.7 45 59-110 22-66 (85)
84 4eez_A Alcohol dehydrogenase 1 22.4 2E+02 0.0068 26.5 7.4 76 60-138 136-214 (348)
85 3hs3_A Ribose operon repressor 22.2 3.9E+02 0.013 23.3 9.6 82 74-158 2-93 (277)
86 4e5s_A MCCFLIKE protein (BA_56 20.4 3.1E+02 0.01 25.3 8.0 60 81-140 8-86 (331)
87 1o69_A Aminotransferase; struc 20.4 3.4E+02 0.012 25.3 8.7 59 79-140 66-130 (394)
88 3sr3_A Microcin immunity prote 20.2 2.7E+02 0.0091 25.8 7.5 61 81-141 9-88 (336)
89 3l8c_A D-alanine--poly(phospho 20.1 2.9E+02 0.01 27.1 8.5 77 212-291 29-109 (521)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1e-82 Score=663.02 Aligned_cols=518 Identities=40% Similarity=0.675 Sum_probs=444.9
Q ss_pred CcccccCCCCCCCCCCCCCCHHHHHhcc--CCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
Q 008946 17 NSIFYSKRKPVSLPPNESLDVTTFISSR--AHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPN 94 (548)
Q Consensus 17 ~~~~~~~~~~~~~p~~~~~~l~~~~~~~--~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~ 94 (548)
..++.++.++..+|.+ .++.+++.++ ..|+++|+++..+++++||+||.++++++|++|++.|+++||+|+++++|
T Consensus 6 ~~i~~~~~~~~~~p~~--~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 83 (536)
T 3ni2_A 6 EFIFRSKLPDIYIPKN--LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPS 83 (536)
T ss_dssp CCCBCCSSCCCCCCSS--CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS
T ss_pred ceEEecCCCCCCCCCC--CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 3566666666666654 6899999887 45789999987667899999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccC----CCCcEEEecCCCCcccCCcccc
Q 008946 95 SIFFPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG----STLPIVLLDDEKTTSTEGIKTV 170 (548)
Q Consensus 95 ~~~~~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 170 (548)
++++++++|||+++|++++|++|.++.+++.++++.++++++|++....+.+.. ...+++.++.... ...
T Consensus 84 ~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-- 157 (536)
T 3ni2_A 84 SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPD----GCL-- 157 (536)
T ss_dssp SHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCT----TCE--
T ss_pred cHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCC----Ccc--
Confidence 999999999999999999999999999999999999999999999876654432 2344555443211 000
Q ss_pred ccccccccCCCCCCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhcc---ccCCCCeEEEEccchHHH
Q 008946 171 TTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRF---KLEDGEQTFICTVPMFHI 247 (548)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~ 247 (548)
.+........ .........++++++|+|||||||.||+|.++|+++.+......... .....++++++.+|++|.
T Consensus 158 -~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 235 (536)
T 3ni2_A 158 -HFSELTQADE-NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHI 235 (536)
T ss_dssp -ETHHHHTSCG-GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSH
T ss_pred -CHHHHhhccc-cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHH
Confidence 0011111100 01122345789999999999999999999999999988876654321 134667889999999999
Q ss_pred HhHHHHHHHHHHcCCEEEEcCCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHH
Q 008946 248 YGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREV 327 (548)
Q Consensus 248 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~ 327 (548)
+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.... ...+++++|.+++||+++++++
T Consensus 236 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~gGe~l~~~~ 313 (536)
T 3ni2_A 236 YALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDL--DKHDLSSLRMIKSGGAPLGKEL 313 (536)
T ss_dssp HHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCG--GGSCCTTCCEEEEESSCCCHHH
T ss_pred HHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCccc--ccCCCccceEEEECCCCCCHHH
Confidence 99977788899999999999999999999999999999999999999999987654 4567899999999999999999
Q ss_pred HHHHHHHCCCCeEEeeeccccccCcccccC---CccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCccc
Q 008946 328 IEGFVQKYPKVRILQGYGLTESTGIGASTD---SLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIM 404 (548)
Q Consensus 328 ~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~ 404 (548)
.+.+.+.||++++++.||+||++++++.+. ........+++|.|+++++++|+|++++++++.|+.|||+|+|+.++
T Consensus 314 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~ 393 (536)
T 3ni2_A 314 EDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIM 393 (536)
T ss_dssp HHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSC
T ss_pred HHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccc
Confidence 999999999999999999999987765432 12223456789999999999999988899999999999999999999
Q ss_pred ccccCCCccCccccCCCCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCC
Q 008946 405 KGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAG 484 (548)
Q Consensus 405 ~~y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 484 (548)
.||+++++.+.+.|+.+|||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|.|.+++|++.+++..+
T Consensus 394 ~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g 473 (536)
T 3ni2_A 394 KGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAG 473 (536)
T ss_dssp SEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTE
T ss_pred hhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCC
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999998889
Q ss_pred ceeeEEEEecCCCCCCHHHHHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHh
Q 008946 485 QYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATS 546 (548)
Q Consensus 485 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~ 546 (548)
+.++++++..++...+.++++++++++|+.|++|+.++++++||+|++|||+|++|++++++
T Consensus 474 ~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 474 EVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp EEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred ceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 99999999888778889999999999999999999999999999999999999999998764
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.9e-79 Score=638.01 Aligned_cols=503 Identities=36% Similarity=0.570 Sum_probs=427.1
Q ss_pred CCHHH-HHhcc--CCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCCe
Q 008946 35 LDVTT-FISSR--AHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAI 111 (548)
Q Consensus 35 ~~l~~-~~~~~--~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~ 111 (548)
.++.+ ++.++ .. +++|+++...++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 57888 66655 35 8899998545789999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccC-----C-CCcEEEecCCCCcccCCccccccccccccCCCCCCc
Q 008946 112 ITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG-----S-TLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTL 185 (548)
Q Consensus 112 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (548)
++|+++.++.+++.++++.++++++|++....+.+.. . ...++.++.... ..... .+............
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~ 178 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD--YRGYQ---CLDTFIKRNTPPGF 178 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC--BTTBC---BHHHHHHHTSCTTC
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc--ccccc---cHHHHHhcCccccC
Confidence 9999999999999999999999999999876544322 1 223444432210 00000 00000000000000
Q ss_pred cccCC------CCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhcc--ccCCCCeEEEEccchHHHHhHHHHHHHH
Q 008946 186 VRDRI------NQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRF--KLEDGEQTFICTVPMFHIYGLAAFATGL 257 (548)
Q Consensus 186 ~~~~~------~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~g~~~~~~~~ 257 (548)
..... .++++++++|||||||.||+|.++|+++..........+ .....++++++.+|++|.+|+...++.+
T Consensus 179 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~ 258 (548)
T 2d1s_A 179 QASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYL 258 (548)
T ss_dssp CGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred CcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 00111 238999999999999999999999999998887766542 2345677899999999999986666777
Q ss_pred HHcCCEEEEcCCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCC
Q 008946 258 LASGSTIVVLSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPK 337 (548)
Q Consensus 258 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~ 337 (548)
+ .|+++++.+.+++..+++.++++++|++.++|+++..|++.... ...+++++|.+++||+++++++.+.+.+.|++
T Consensus 259 l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~ 335 (548)
T 2d1s_A 259 I-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELL--NKYDLSNLVEIASGGAPLSKEVGEAVARRFNL 335 (548)
T ss_dssp H-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCG--GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTC
T ss_pred h-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccc--ccccccceeEEEEcCccCCHHHHHHHHHHcCC
Confidence 7 99999999889999999999999999999999999999987543 44568899999999999999999999999988
Q ss_pred CeEEeeeccccccCcccccCCccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccc
Q 008946 338 VRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTST 417 (548)
Q Consensus 338 ~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~ 417 (548)
+++++.||+||++++++... ......+++|.|.|+++++|+|++++++++.|+.|||+++|+.++.||+++++.+.+.
T Consensus 336 ~~i~~~YG~TE~~~~~~~~~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~ 413 (548)
T 2d1s_A 336 PGVRQGYGLTETTSAIIITP--EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL 413 (548)
T ss_dssp SCCEEEEECGGGSSEEEECC--TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHH
T ss_pred CceeeccccccccceeeecC--cccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhc
Confidence 89999999999987766532 2234567899999999999999888999999999999999999999999999999999
Q ss_pred cCCCCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCC
Q 008946 418 LDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGS 497 (548)
Q Consensus 418 ~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 497 (548)
|+.+|||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|.|.+++|++.+++..|+.++++|++.++.
T Consensus 414 f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~ 493 (548)
T 2d1s_A 414 IDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK 493 (548)
T ss_dssp BCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred ccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC
Confidence 98899999999999999999999999999999999999999999999999999999999999888888899999988776
Q ss_pred CCCHHHHHHHHHhccCCCCcee-EEEEeecCCCCCCcccchHHHHHHHHhcC
Q 008946 498 RLSENEVMDFVARQVAPYKRVR-RVAFVASIPKNPSGKILRKDLIKLATSKL 548 (548)
Q Consensus 498 ~~~~~~l~~~l~~~l~~~~~p~-~i~~~~~lP~t~~GKv~R~~l~~~~~~~~ 548 (548)
..+.++++++++++|+.+++|+ .++++++||+|++||++|++|++++.+.|
T Consensus 494 ~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 545 (548)
T 2d1s_A 494 NMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPV 545 (548)
T ss_dssp CCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhh
Confidence 7788999999999999999999 99999999999999999999999998764
No 3
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=6.6e-79 Score=629.01 Aligned_cols=484 Identities=27% Similarity=0.431 Sum_probs=415.7
Q ss_pred CCCCcEEEe-CCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCCeEecCCCCCCHHHH
Q 008946 46 HHGRTAFID-AATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLNTKQEI 124 (548)
Q Consensus 46 ~~~~~a~~~-~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~~v~l~~~~~~~~~ 124 (548)
.++++++.. ...++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++
T Consensus 13 ~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l 92 (503)
T 4fuq_A 13 LDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHEL 92 (503)
T ss_dssp CSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCCHHHH
T ss_pred CCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHH
Confidence 456666652 2336899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCeEEEEcCcccccccC----CCCcEEEecCCCCcccCCccccccccccccCCCCCCccccCCCCCCEEEEEc
Q 008946 125 AKQIADSKPVLAFTISQLVPKLAG----STLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLY 200 (548)
Q Consensus 125 ~~~l~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (548)
.+++++++++++|++......+.. ....+..++..... .......... .........++++++|+|
T Consensus 93 ~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~d~a~i~~ 162 (503)
T 4fuq_A 93 DYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRG---------SLTDAAAGAS-EAFATIDRGADDLAAILY 162 (503)
T ss_dssp HHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCS---------HHHHHHHTSC-SCCCCCCCCTTSEEEEEE
T ss_pred HHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCccc---------ccchhhhcCC-CCcCcCCCCCCCeEEEEE
Confidence 999999999999999776543322 12223333221110 0000000000 111222456899999999
Q ss_pred CCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEcCCCCHHHHHHHHh
Q 008946 201 SSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSIS 280 (548)
Q Consensus 201 TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~ 280 (548)
||||||.||+|.++|+++.+........+ ....++++++.+|++|.+|+....+.+++.|+++++.+.+++..+++.++
T Consensus 163 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~ 241 (503)
T 4fuq_A 163 TSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA 241 (503)
T ss_dssp CC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHT
T ss_pred CCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHh
Confidence 99999999999999999999888877776 44667789999999999998666778899999999999999999999998
Q ss_pred hccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEEeeeccccccCcccccCCcc
Q 008946 281 KYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLE 360 (548)
Q Consensus 281 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~ 360 (548)
++|++.++|+++..+++.... ....++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..... ...
T Consensus 242 --~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~--~~~ 314 (503)
T 4fuq_A 242 --RATVLMGVPTFYTRLLQSPRL--TKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSN--PYD 314 (503)
T ss_dssp --TCCEEEECHHHHHHHHTCTTC--STTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCC--CSS
T ss_pred --hcCEEEEHHHHHHHHHhCCCc--cccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCccccc--CCC
Confidence 899999999999999987654 445678999999999999999999999998 7899999999999876543 223
Q ss_pred ccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccccCCCCeeecCceeEEcCCCcEEE
Q 008946 361 ESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFI 440 (548)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~ 440 (548)
.....+++|.|+|+++++|+|++++++++.|+.|||+|+|+.++.||+++++.+.+.|..+|||+|||+|++++||.+++
T Consensus 315 ~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~ 394 (503)
T 4fuq_A 315 GDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHI 394 (503)
T ss_dssp SCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEE
T ss_pred CCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEE
Confidence 34456889999999999999988999999999999999999999999999999999998899999999999999999999
Q ss_pred EcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCCCHHHHHHHHHhccCCCCceeE
Q 008946 441 VDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRR 520 (548)
Q Consensus 441 ~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 520 (548)
.||+||+||++|++|+|.|||++|.++|.|.+++|++++++..++.++++++..++...+.++++++++++|+.|++|+.
T Consensus 395 ~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 474 (503)
T 4fuq_A 395 LGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKK 474 (503)
T ss_dssp CCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSE
T ss_pred EecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCE
Confidence 99999999999999999999999999999999999999998889999999998888788999999999999999999999
Q ss_pred EEEeecCCCCCCcccchHHHHHHHHhc
Q 008946 521 VAFVASIPKNPSGKILRKDLIKLATSK 547 (548)
Q Consensus 521 i~~~~~lP~t~~GKv~R~~l~~~~~~~ 547 (548)
++++++||+|++||++|++|++++.+.
T Consensus 475 i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 475 VIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred EEEECCCCCCcccceeHHHHHHHHHHh
Confidence 999999999999999999999998764
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=6.2e-79 Score=636.48 Aligned_cols=500 Identities=29% Similarity=0.490 Sum_probs=385.8
Q ss_pred CCHHHHHhcc--CCCCCcEEEeCCC------CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHH
Q 008946 35 LDVTTFISSR--AHHGRTAFIDAAT------GRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVM 106 (548)
Q Consensus 35 ~~l~~~~~~~--~~~~~~a~~~~~~------~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~ 106 (548)
.++.+++.++ ..|+++|+++.+. .+++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+
T Consensus 19 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 98 (549)
T 3g7s_A 19 ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALW 98 (549)
T ss_dssp CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 5788888877 4588999997642 1899999999999999999999999999999999999999999999999
Q ss_pred HcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccC----CCCcEEEecCCCCcccCCccccccccccccCCCC
Q 008946 107 SLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG----STLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPS 182 (548)
Q Consensus 107 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (548)
++|++++|++|.++.+++.++++.++++++|++....+.+.. .....+++.+.... .+.........
T Consensus 99 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 169 (549)
T 3g7s_A 99 RVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVN---------SLSEVMDSGSE 169 (549)
T ss_dssp HTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSS---------CHHHHHHHSCS
T ss_pred HhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCc---------CHHHHHhcCcc
Confidence 999999999999999999999999999999999876554322 22333332221110 00000000000
Q ss_pred CCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHHHHHcCC
Q 008946 183 GTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGS 262 (548)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~ 262 (548)
.........++++++|+|||||||.||+|.++|+++..........+ ....++++++.+|++|.+++.. ++.++..|+
T Consensus 170 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~ 247 (549)
T 3g7s_A 170 DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTIVGCMPMFHSAEFGL-VNLMVTVGN 247 (549)
T ss_dssp CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CCCTTCEEECCSCTTSHHHHHH-HTTHHHHCC
T ss_pred ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CCCCCCEEEEeCcHHHHHHHHH-HHHHHhcCc
Confidence 01111122348999999999999999999999999999888777665 4466778888999999998855 778899999
Q ss_pred EEEEcCCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHH----CC--
Q 008946 263 TIVVLSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQK----YP-- 336 (548)
Q Consensus 263 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~----~~-- 336 (548)
++++.+.+++..+++.++++++|++.++|+++..|++.........+++++|.+++||+++++++.+.+.+. ++
T Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~ 327 (549)
T 3g7s_A 248 EYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNP 327 (549)
T ss_dssp EEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCT
T ss_pred eEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCc
Confidence 999999999999999999999999999999999998876542233568899999999999999999999987 52
Q ss_pred CCeEEeeeccccccCcccccCCccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCcc
Q 008946 337 KVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTS 416 (548)
Q Consensus 337 ~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~ 416 (548)
++++++.||+||++++++..... .....+++|.|+++++++|+|++++++++.|+.|||+|+|+.++.||+++++.+.+
T Consensus 328 ~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 406 (549)
T 3g7s_A 328 RLRHNQIWGMTEACPMVTTNPPL-RLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQE 406 (549)
T ss_dssp TCEEEEEEECGGGSSEEEECCGG-GGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGT
T ss_pred cccccceEeccccchhhhcCCcc-ccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhh
Confidence 38999999999999877654322 22455789999999999999988899999999999999999999999999999998
Q ss_pred ccC--CCC--eeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEE
Q 008946 417 TLD--SEG--WLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVV 492 (548)
Q Consensus 417 ~~~--~~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 492 (548)
.|. .+| ||+|||+|++++||.+++.||+||+||++|++|+|.|||++|.++|.|.+++|++.+++..++.++++++
T Consensus 407 ~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv 486 (549)
T 3g7s_A 407 CWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIV 486 (549)
T ss_dssp SEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEE
T ss_pred hhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEE
Confidence 873 566 9999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred ecCC--CCCCHHHHHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHh
Q 008946 493 REAG--SRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATS 546 (548)
Q Consensus 493 ~~~~--~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~ 546 (548)
..++ ...+.++++++++++|+.|++|+.++++++||+|++|||+|++|+++..+
T Consensus 487 ~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 542 (549)
T 3g7s_A 487 LKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAE 542 (549)
T ss_dssp ECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC------------------
T ss_pred ECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhc
Confidence 8766 56788999999999999999999999999999999999999999998765
No 5
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.6e-79 Score=639.42 Aligned_cols=520 Identities=33% Similarity=0.533 Sum_probs=330.3
Q ss_pred cccccCCCCCCCCCCCCCCHHHHHhccC--CCCCcEEE---eCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
Q 008946 18 SIFYSKRKPVSLPPNESLDVTTFISSRA--HHGRTAFI---DAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLS 92 (548)
Q Consensus 18 ~~~~~~~~~~~~p~~~~~~l~~~~~~~~--~~~~~a~~---~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~ 92 (548)
.++.+..++. +....++.+++.+++ .+++++++ +...++++||+||+++++++|++|+++|+++||+|++++
T Consensus 6 ~~~~~~~~~~---~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~ 82 (550)
T 3rix_A 6 NIKKGPAPFY---PLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCS 82 (550)
T ss_dssp GSEECCCCSS---CCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred ceeeCCCCCC---CcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEc
Confidence 4555555433 344468999998873 45666654 655678999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccC-----CCCc-EEEecCCCCcccCC
Q 008946 93 PNSIFFPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG-----STLP-IVLLDDEKTTSTEG 166 (548)
Q Consensus 93 ~~~~~~~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~ 166 (548)
+|++++++++|||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.. .... ++.++.... ...
T Consensus 83 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 160 (550)
T 3rix_A 83 ENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD--YQG 160 (550)
T ss_dssp SSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSC--BTT
T ss_pred CCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCcc--ccC
Confidence 99999999999999999999999999999999999999999999999876654432 1223 333332111 011
Q ss_pred ccccc-cccccccCCC--CCCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhcc--ccCCCCeEEEEc
Q 008946 167 IKTVT-TLPQMMRKEP--SGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRF--KLEDGEQTFICT 241 (548)
Q Consensus 167 ~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 241 (548)
..... .......... ..........++++++|+|||||||.||+|.++|+++..........+ .....++++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (550)
T 3rix_A 161 FQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSV 240 (550)
T ss_dssp BCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEEC
T ss_pred cccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEe
Confidence 10000 0000000000 001111223457899999999999999999999999988877665542 234567899999
Q ss_pred cchHHHHhHHHHHHHHHHcCCEEEEcCCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCC
Q 008946 242 VPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGA 321 (548)
Q Consensus 242 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~ 321 (548)
+|++|.+|+ ...+.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.... ...+++++|.+++||+
T Consensus 241 ~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~gG~ 317 (550)
T 3rix_A 241 VPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI--DKYDLSNLHEIASGGA 317 (550)
T ss_dssp SCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGG--GGSCCTTCCEEEECSS
T ss_pred chHHHHHHH-HHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccc--cccCcccccEEEEecC
Confidence 999999998 5667889999999999999999999999999999999999999999987654 5567899999999999
Q ss_pred CCCHHHHHHHHHHCCCCeEEeeeccccccCcccccCCccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCC
Q 008946 322 PLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGP 401 (548)
Q Consensus 322 ~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~ 401 (548)
++++++.+.+.+.++...+++.||+||++++++.... .....+++|.|.|+++++|+|++++++++.|+.|||+|+|+
T Consensus 318 ~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~--~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~ 395 (550)
T 3rix_A 318 PLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 395 (550)
T ss_dssp CCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT--TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEEST
T ss_pred CCCHHHHHHHHHHcCCCccccccCcCccccceecCCC--CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCC
Confidence 9999999999999955569999999999977665432 33456889999999999999988899999999999999999
Q ss_pred cccccccCCCccCccccCCCCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCC
Q 008946 402 SIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDK 481 (548)
Q Consensus 402 ~~~~~y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~ 481 (548)
.++.||+++++.+.+.|+.+|||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|.|.+++|++.+++
T Consensus 396 ~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 475 (550)
T 3rix_A 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDD 475 (550)
T ss_dssp TSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----------------------------------------
T ss_pred CcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecC
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeeEEEEecCCCCCCHHHHHHHHHhccCCCCcee-EEEEeecCCCCCCcccchHHHHHHHHhc
Q 008946 482 EAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVR-RVAFVASIPKNPSGKILRKDLIKLATSK 547 (548)
Q Consensus 482 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~i~~~~~lP~t~~GKv~R~~l~~~~~~~ 547 (548)
..++.++++|+..++...+.++++++++++++++..|. .++++++||+|++||++|++|++++.++
T Consensus 476 ~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 542 (550)
T 3rix_A 476 DAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKA 542 (550)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhh
Confidence 88999999999887777888999999999999987665 6899999999999999999999998754
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.2e-78 Score=629.29 Aligned_cols=497 Identities=27% Similarity=0.458 Sum_probs=420.8
Q ss_pred CCCCCCCHHHHHhcc--CCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHH
Q 008946 30 PPNESLDVTTFISSR--AHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMS 107 (548)
Q Consensus 30 p~~~~~~l~~~~~~~--~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~ 107 (548)
+.....++.+++.++ ..|+++|+++...++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||++
T Consensus 11 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 90 (517)
T 3r44_A 11 DDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAK 90 (517)
T ss_dssp -CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHH
Confidence 345557899999887 468899999874455999999999999999999999999999999999999999999999999
Q ss_pred cCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccC-----C-CCcEEEecCCCCcccCCccccccccccccCCC
Q 008946 108 LGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG-----S-TLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEP 181 (548)
Q Consensus 108 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (548)
+|++++|++|.++.+++.++++.++++++|++....+.+.. . ...++.+.. ...+........
T Consensus 91 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 159 (517)
T 3r44_A 91 LGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG-----------ADSLAERLRSAA 159 (517)
T ss_dssp HTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE-----------HHHHHHHHHHCC
T ss_pred hCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC-----------cccHHHHhhccC
Confidence 99999999999999999999999999999998876544321 0 000111100 000000000011
Q ss_pred CCCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHHHHHcC
Q 008946 182 SGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASG 261 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G 261 (548)
.........++++++|+|||||||.||+|.++|+++.+........+ ....++++++.+|++|.+++...++..+ .|
T Consensus 160 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G 236 (517)
T 3r44_A 160 -ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DVRYRDRLLLPLPMFHVAALTTVIFSAM-RG 236 (517)
T ss_dssp -CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CCCTTCEEEECSCTTSHHHHHHHHHHHH-HT
T ss_pred -cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CCCCCCEEEEeCchHHHHHHHHHHHHHh-cC
Confidence 11122345789999999999999999999999999999888877766 4466778899999999999865555555 99
Q ss_pred CEEEEcCCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEE
Q 008946 262 STIVVLSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRIL 341 (548)
Q Consensus 262 ~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~ 341 (548)
+++++.+.+++..+++.+.++++|++.++|+++..+.+.... ...+++++|.+++||+++++++.+.+.+. +++++
T Consensus 237 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~ 312 (517)
T 3r44_A 237 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF--AELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVV 312 (517)
T ss_dssp CEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH--HHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEE
T ss_pred eEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc--ccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEE
Confidence 999999999999999999999999999999999999887653 45568899999999999999999999886 78999
Q ss_pred eeeccccccCcccccCCccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccccCCC
Q 008946 342 QGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSE 421 (548)
Q Consensus 342 ~~yG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~ 421 (548)
+.||+||+++.++...........+++|.|.++++++++| +++..++.| .|||+|+|+.++.||+++++.+.+.| .+
T Consensus 313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~ 389 (517)
T 3r44_A 313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DN 389 (517)
T ss_dssp EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ET
T ss_pred EeecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cC
Confidence 9999999987766544433345668899999999999999 558888888 89999999999999999999999988 68
Q ss_pred CeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCCCH
Q 008946 422 GWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSE 501 (548)
Q Consensus 422 ~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 501 (548)
|||+|||+|++++||++++.||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.+++++ ..++...+.
T Consensus 390 g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~ 468 (517)
T 3r44_A 390 GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSE 468 (517)
T ss_dssp TEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCH
T ss_pred CCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999888888887777 555667888
Q ss_pred HHHHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHhcC
Q 008946 502 NEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 548 (548)
Q Consensus 502 ~~l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~~~ 548 (548)
++++++++++|+.|++|+.++++++||+|++|||+|++|++++.+++
T Consensus 469 ~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 469 QQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp HHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999998764
No 7
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2.4e-78 Score=630.14 Aligned_cols=494 Identities=25% Similarity=0.380 Sum_probs=418.5
Q ss_pred CCHHHHHhcc--CCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCCeE
Q 008946 35 LDVTTFISSR--AHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAII 112 (548)
Q Consensus 35 ~~l~~~~~~~--~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~~ 112 (548)
.++.+++.++ ..|+++|+++. ++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 25 ~tl~~~l~~~a~~~p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 102 (539)
T 1mdb_A 25 ETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP 102 (539)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHHCCCCEEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence 5799999877 45889999986 6899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcCcccc--------cccC--CCCcEEEecCCCCcccCCccccccccccccCCCC
Q 008946 113 TTTNPLNTKQEIAKQIADSKPVLAFTISQLVP--------KLAG--STLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPS 182 (548)
Q Consensus 113 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (548)
+|++|.++.+++.++++.++++++|++..... .+.. .....+++.+... .. .........
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~ 172 (539)
T 1mdb_A 103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE----EF------LPLEDLHTE 172 (539)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT----TS------EEGGGCCCC
T ss_pred ecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc----ch------hhhhhcccc
Confidence 99999999999999999999999999875321 1110 1222222221110 00 000000000
Q ss_pred CCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHH-HHHHHHHcC
Q 008946 183 GTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAA-FATGLLASG 261 (548)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G 261 (548)
........++++++++|||||||.||||.++|+++.+........+ ....++++++.+|++|.+++.. .++.++..|
T Consensus 173 -~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G 250 (539)
T 1mdb_A 173 -PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAG 250 (539)
T ss_dssp -CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTT
T ss_pred -ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCCEEEEeecccccchhhHHHHHHHHHhC
Confidence 1112345678999999999999999999999999998887766665 3466788999999999999865 688899999
Q ss_pred CEEEEcCCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEE
Q 008946 262 STIVVLSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRIL 341 (548)
Q Consensus 262 ~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~ 341 (548)
+++++.+.+++..+++.++++++|++.++|+++..+++.... ...+++++|.+++||+++++++.+++.+.+ +++++
T Consensus 251 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~ 327 (539)
T 1mdb_A 251 GRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASS--RRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQ 327 (539)
T ss_dssp CEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHH--CCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEE
T ss_pred CEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccc--cCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEE
Confidence 999999989999999999999999999999999999876543 445689999999999999999999999998 79999
Q ss_pred eeeccccccCcccccCCccccCCCCcccccCCC-ceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccccCC
Q 008946 342 QGYGLTESTGIGASTDSLEESRKYGTAGMLSPS-MEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDS 420 (548)
Q Consensus 342 ~~yG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~ 420 (548)
+.||+||++..... .........+++|.|+++ .+++|+| +++++++.|+.|||+|+|+.++.||+++++.+.+.|..
T Consensus 328 ~~YG~TE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 405 (539)
T 1mdb_A 328 QVFGMAEGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTE 405 (539)
T ss_dssp EEEECTTSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCT
T ss_pred EEEcCCCCcccccC-CCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccC
Confidence 99999996533222 111111234678999975 4799999 56899999999999999999999999999999999988
Q ss_pred CCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCCC
Q 008946 421 EGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLS 500 (548)
Q Consensus 421 ~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 500 (548)
+|||+|||+|++++||++++.||+||+||++|++|+|.|||++|.++|.|.+++|++.+++..++.++++++.. +...+
T Consensus 406 ~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~-~~~~~ 484 (539)
T 1mdb_A 406 DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPR-DEAPK 484 (539)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES-SSCCC
T ss_pred CCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEEC-CCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999888888899999876 34567
Q ss_pred HHHHHHHHHhc-cCCCCceeEEEEeecCCCCCCcccchHHHHHHHHhcC
Q 008946 501 ENEVMDFVARQ-VAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 548 (548)
Q Consensus 501 ~~~l~~~l~~~-l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~~~ 548 (548)
.++++++++++ |+.|++|+.++++++||+|++||++|++|++++.++|
T Consensus 485 ~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 533 (539)
T 1mdb_A 485 AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533 (539)
T ss_dssp HHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence 89999999998 9999999999999999999999999999999988753
No 8
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.7e-77 Score=617.87 Aligned_cols=491 Identities=26% Similarity=0.365 Sum_probs=413.2
Q ss_pred CCHHHHHhcc--CCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCCeE
Q 008946 35 LDVTTFISSR--AHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAII 112 (548)
Q Consensus 35 ~~l~~~~~~~--~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~~ 112 (548)
.++.+++.++ ..|+++|+++...++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 4678888776 46889999986556899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEE--cCcccccc-cC-CCCcEEEecCCCCcccCCccccccccccccCCCCCCcccc
Q 008946 113 TTTNPLNTKQEIAKQIADSKPVLAFT--ISQLVPKL-AG-STLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRD 188 (548)
Q Consensus 113 v~l~~~~~~~~~~~~l~~~~~~~vi~--~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (548)
+|++|.++.+++.++++.++++++++ +....+.+ .. ...+++.+++.. ...............
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 148 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLV-------------RDGEPYSYGPPIEDP 148 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEEGGGTE-------------ETTEECCCSCCCCCC
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEEecchh-------------hcCcccccCCccCCC
Confidence 99999999999999999999999999 66544333 11 122222111100 000000000001113
Q ss_pred CCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccC-CCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEc
Q 008946 189 RINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLE-DGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVL 267 (548)
Q Consensus 189 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 267 (548)
...++++++|+|||||||.||+|.++|+++.+........+... ..++++++.+|++|.+|+...++.++..|+++++.
T Consensus 149 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 228 (504)
T 1t5h_X 149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV 228 (504)
T ss_dssp CCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEEC
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeC
Confidence 34678999999999999999999999999998877766655331 56778999999999999866788899999999999
Q ss_pred CCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEEeeeccc
Q 008946 268 SKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLT 347 (548)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~t 347 (548)
+.+++..+++.++++++|++.++|+++..|++.........+++++|.+++||+++++++.+.+.+.+ ++++++.||+|
T Consensus 229 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~T 307 (504)
T 1t5h_X 229 EEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTT 307 (504)
T ss_dssp SSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEET
T ss_pred CCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeeccc
Confidence 98999999999999999999999999999987652211344678999999999999999999999999 68999999999
Q ss_pred cccCcccccCCccccCCCCcccccCCCceEEEEcCCCC--cccCCCCccEEEEe-CCcccccccCCCccCccccCCCCee
Q 008946 348 ESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSG--KALLVNQTGELWLK-GPSIMKGYFSNPEATTSTLDSEGWL 424 (548)
Q Consensus 348 E~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~--~~~~~g~~Gel~v~-~~~~~~~y~~~~~~~~~~~~~~~~~ 424 (548)
|++. +... . ....++.|.|.+++++++++.+.+ ++++.|+.|||+++ |+.++.||+++++.+.+.| .+|||
T Consensus 308 E~~~-~~~~-~---~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~ 381 (504)
T 1t5h_X 308 EAMN-SLYM-R---QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWY 381 (504)
T ss_dssp TTEE-EEEE-E---SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEE
T ss_pred cccc-cccc-c---CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCcc
Confidence 9842 2221 1 234578999999999999995432 88999999999999 9999999999999999888 68999
Q ss_pred ecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCCCHHHH
Q 008946 425 RTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEV 504 (548)
Q Consensus 425 ~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 504 (548)
+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|.|.+++|++.+++..++.++++|++.++...+.+++
T Consensus 382 ~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l 461 (504)
T 1t5h_X 382 RTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADAL 461 (504)
T ss_dssp EEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHH
T ss_pred ccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888999999999887777888999
Q ss_pred HHHHHh-ccCCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 008946 505 MDFVAR-QVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLAT 545 (548)
Q Consensus 505 ~~~l~~-~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~ 545 (548)
++++++ +|+.|++|+.++++++||+|++|||+|++|++++.
T Consensus 462 ~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 462 DTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp HHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred HHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 999999 99999999999999999999999999999999875
No 9
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.3e-77 Score=635.04 Aligned_cols=509 Identities=25% Similarity=0.333 Sum_probs=417.2
Q ss_pred CHHHHHhccC--CCCCcEEEeC----CCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcC
Q 008946 36 DVTTFISSRA--HHGRTAFIDA----ATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLG 109 (548)
Q Consensus 36 ~l~~~~~~~~--~~~~~a~~~~----~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G 109 (548)
++.+++.+++ .++++|++.. ..++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 4566776663 4889999862 234789999999999999999999999999999999999999999999999999
Q ss_pred CeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccc-------------ccCC---CC-cEEEecCCCCcccCCcccccc
Q 008946 110 AIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPK-------------LAGS---TL-PIVLLDDEKTTSTEGIKTVTT 172 (548)
Q Consensus 110 ~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~-------------~~~~---~~-~~~~~~~~~~~~~~~~~~~~~ 172 (548)
++++|+++.++.+++.++++++++++||+++..... +... .+ .+++++...............
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 236 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW 236 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEE
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCcee
Confidence 999999999999999999999999999998764321 1111 12 234443211100000000000
Q ss_pred ccccccCCCCCCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHH-hhccccCCCCeEEEEccchHHHHhHH
Q 008946 173 LPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTV-LGRFKLEDGEQTFICTVPMFHIYGLA 251 (548)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~g~~ 251 (548)
+.+...... .........++++++|+|||||||.||||+++|+++....... ...+ ....++++++..|++|.+|..
T Consensus 237 ~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~g~~ 314 (652)
T 1pg4_A 237 WRDLIEKAS-PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-DYHPGDIYWCTADVGWVTGHS 314 (652)
T ss_dssp HHHHHTTSC-SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHH
T ss_pred HHHHHhhcC-CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-CCCCCCEEEEccCCeeeechH
Confidence 111111111 1111223467899999999999999999999999987665433 3333 446778999999999999987
Q ss_pred HHHHHHHHcCCEEEEcCC----CCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHH
Q 008946 252 AFATGLLASGSTIVVLSK----FDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREV 327 (548)
Q Consensus 252 ~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~ 327 (548)
..++.++..|+++++.+. +++..+++.++++++|+++++|+++..|++...+.....+++++|.+++|||++++++
T Consensus 315 ~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~ 394 (652)
T 1pg4_A 315 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEA 394 (652)
T ss_dssp HTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHH
T ss_pred HHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHH
Confidence 778899999999999874 5889999999999999999999999999987653234557899999999999999999
Q ss_pred HHHHHHHCC--CCeEEeeeccccccCcccccCCccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeC--Ccc
Q 008946 328 IEGFVQKYP--KVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG--PSI 403 (548)
Q Consensus 328 ~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~--~~~ 403 (548)
++++.+.++ ++++++.||+||+++++............+++|.|+++++++|+|+ ++++++.|+.|||+|+| |++
T Consensus 395 ~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~-~g~~v~~g~~GEl~i~g~~p~~ 473 (652)
T 1pg4_A 395 WEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVITDSWPGQ 473 (652)
T ss_dssp HHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECT-TCCBCCSSEEEEEEECSCCTTC
T ss_pred HHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECC-CCCCcCCCceEEEEEccCCCch
Confidence 999999883 2899999999999876655332222345689999999999999994 58999999999999999 789
Q ss_pred cccccCCCccCccccC--CCCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCC
Q 008946 404 MKGYFSNPEATTSTLD--SEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDK 481 (548)
Q Consensus 404 ~~~y~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~ 481 (548)
+.|||++++.+.+.+. .+|||+|||+|++++||+++++||+||+||++|++|++.|||++|.+||.|.+++|++.+++
T Consensus 474 ~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~ 553 (652)
T 1pg4_A 474 ARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHA 553 (652)
T ss_dssp CCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEET
T ss_pred hhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcC
Confidence 9999999988766542 37899999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeeEEEEecCCCCCC---HHHHHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHhc
Q 008946 482 EAGQYPMAYVVREAGSRLS---ENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSK 547 (548)
Q Consensus 482 ~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~~ 547 (548)
..|+.++++|++.++...+ .++|+++++++|++|++|+.|+++++||+|++|||+|++|++++.++
T Consensus 554 ~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 554 IKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp TTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred CCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 8889999999987665444 47899999999999999999999999999999999999999998764
No 10
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.9e-78 Score=671.84 Aligned_cols=532 Identities=40% Similarity=0.644 Sum_probs=352.3
Q ss_pred CCccccCcccccCCCCCCCCCCCCCCHHHHHhcc--CCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008946 11 SGFCKSNSIFYSKRKPVSLPPNESLDVTTFISSR--AHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVI 88 (548)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~--~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V 88 (548)
+.......+|.+..++..+|.. .++++++.++ ..|+++|+++..+++++||+||+++++++|++|+++|+++||+|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~p~~--~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V 116 (979)
T 3tsy_A 39 SNNNNSDVIFRSKLPDIYIPNH--LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVV 116 (979)
T ss_dssp ------CCCBCCSSCCCCCCTT--SCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred ccCCCCCceeecCCCCCCCCCC--CCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEE
Confidence 3344445566666565555533 6899999988 45789999997778899999999999999999999999999999
Q ss_pred EEECCCCCcHHHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccC----CCCcEEEecCCCCccc
Q 008946 89 LLLSPNSIFFPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG----STLPIVLLDDEKTTST 164 (548)
Q Consensus 89 ~i~~~~~~~~~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 164 (548)
+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+.. ....++.+++......
T Consensus 117 ~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (979)
T 3tsy_A 117 MLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPI 196 (979)
T ss_dssp EEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCC
T ss_pred EEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccC
Confidence 999999999999999999999999999999999999999999999999999876655432 2344454443211111
Q ss_pred -CCccccccccccccCCCCCCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhcc---ccCCCCeEEEE
Q 008946 165 -EGIKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRF---KLEDGEQTFIC 240 (548)
Q Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~---~~~~~~~~~~~ 240 (548)
........+..... ............++++++|+|||||||.||+|+++|+++.+......... .....++++++
T Consensus 197 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~ 275 (979)
T 3tsy_A 197 PEGCLRFTELTQSTT-EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILC 275 (979)
T ss_dssp CTTEEEGGGTSSCCS-GGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEE
T ss_pred CcccccHHHHhhccc-cccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEE
Confidence 11100111100000 00001122345789999999999999999999999999998876654322 13466789999
Q ss_pred ccchHHHHhHHHHHHHHHHcCCEEEEcCCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecC
Q 008946 241 TVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGG 320 (548)
Q Consensus 241 ~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G 320 (548)
.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.... ...+++++|.+++||
T Consensus 276 ~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~~~~gg 353 (979)
T 3tsy_A 276 VLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSET--EKYDLSSIRVVKSGA 353 (979)
T ss_dssp CSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGG--GTSCCTTCCEEEESS
T ss_pred ECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccc--cCCCccceEEEEEcC
Confidence 999999999977788899999999999999999999999999999999999999999988764 556789999999999
Q ss_pred CCCCHHHHHHHHHHCCCCeEEeeeccccccCcccccC---CccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEE
Q 008946 321 APLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTD---SLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELW 397 (548)
Q Consensus 321 ~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~ 397 (548)
+++++++.+++.+.||++++++.||+||++++++.+. ........+++|.|+++++++|+|++++++++.|+.|||+
T Consensus 354 ~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~ 433 (979)
T 3tsy_A 354 APLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEIC 433 (979)
T ss_dssp CCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEE
T ss_pred CCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEE
Confidence 9999999999999999999999999999987755432 1122335578999999999999999889999999999999
Q ss_pred EeCCcccccccCCCccCccccCCCCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEe
Q 008946 398 LKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVP 477 (548)
Q Consensus 398 v~~~~~~~~y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~ 477 (548)
|+|+.++.||+++++.+.+.|+.+|||+|||+|++++||.+++.||+||+||++|++|+|.|||++|.++|.|.+++|++
T Consensus 434 i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~ 513 (979)
T 3tsy_A 434 IRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVA 513 (979)
T ss_dssp EESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-------------------------------
T ss_pred EECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence 99999999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCceeeEEEEecCCCCCCHHHHHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHhc
Q 008946 478 FPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSK 547 (548)
Q Consensus 478 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~~ 547 (548)
.+++..++.++++++..++...+.++++++++++|+.|++|+.++++++||+|++|||+|++|++++.++
T Consensus 514 ~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 583 (979)
T 3tsy_A 514 MKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANG 583 (979)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ecccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhh
Confidence 9988888999999998777677888999999999999999999999999999999999999999998764
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.5e-76 Score=620.30 Aligned_cols=499 Identities=25% Similarity=0.358 Sum_probs=395.8
Q ss_pred CCHH-HHHhcc--CCCCCcEEEeC---CCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHc
Q 008946 35 LDVT-TFISSR--AHHGRTAFIDA---ATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSL 108 (548)
Q Consensus 35 ~~l~-~~~~~~--~~~~~~a~~~~---~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~ 108 (548)
.++. +++..+ ..|+++|++.. ..++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 55 ~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~ 134 (580)
T 3etc_A 55 FNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKL 134 (580)
T ss_dssp CCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence 4555 777766 46889999852 23478999999999999999999999999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccc--ccccC-----CC--CcEEEecCCCCcccCCccccccccccccC
Q 008946 109 GAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLV--PKLAG-----ST--LPIVLLDDEKTTSTEGIKTVTTLPQMMRK 179 (548)
Q Consensus 109 G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~--~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (548)
|++++|+++.++.+++.++++.++++++|++.+.. ..+.. .. ...+.++.... .... .........
T Consensus 135 Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~ 209 (580)
T 3etc_A 135 GAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL---EGWI--DFRKELEES 209 (580)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCC---TTCE--EHHHHHHHS
T ss_pred CEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccc---cccc--cHHHHHhhC
Confidence 99999999999999999999999999999987654 22211 11 23344432211 0000 000000011
Q ss_pred CCCC--CccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHHH
Q 008946 180 EPSG--TLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGL 257 (548)
Q Consensus 180 ~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~ 257 (548)
.+.. ........++++++|+|||||||.||+|.++|.++........... ....++++++..|++|..+.+..++.+
T Consensus 210 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (580)
T 3etc_A 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NVEDDGLHYTVADSGWGKCVWGKLYGQ 288 (580)
T ss_dssp CSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CCCTTCEEEECCCTTSTHHHHHTTHHH
T ss_pred CcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CCCCCceEEEeCChHHHHHHHHHHHHH
Confidence 1110 1111245789999999999999999999999998887766554443 446677888889998887776667888
Q ss_pred HHcCCEEEEc--CCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHC
Q 008946 258 LASGSTIVVL--SKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKY 335 (548)
Q Consensus 258 l~~G~~~v~~--~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~ 335 (548)
+..|+++++. ..+++..+++.++++++|++.++|+++..|++... ...+++++|.+++|||++++++.+++.+.+
T Consensus 289 l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 365 (580)
T 3etc_A 289 WIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL---SHYNFSTLKYAVVAGEPLNPEVFNRFLEFT 365 (580)
T ss_dssp HHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC------CCTTCCEEEECSSCCCHHHHHHHHHHH
T ss_pred HhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc---ccCCCccceEEEEccCCCCHHHHHHHHHHh
Confidence 9999999887 46899999999999999999999999999987632 455689999999999999999999999988
Q ss_pred CCCeEEeeeccccccCcccccCCccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeC-----CcccccccCC
Q 008946 336 PKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKG-----PSIMKGYFSN 410 (548)
Q Consensus 336 ~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~-----~~~~~~y~~~ 410 (548)
++++++.||+||++.++.... ......+++|.|.|+++++|+|+ ++++++.|+.|||+|+| +.++.||+++
T Consensus 366 -g~~i~~~YG~TE~~~~~~~~~--~~~~~~~~~G~p~~~~~v~ivd~-~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~ 441 (580)
T 3etc_A 366 -GIKLMEGFGQTETVVTIATFP--WMEPKPGSIGKPTPGYKIELMDR-DGRLCEVGEEGEIVINTMEGKPVGLFVHYGKD 441 (580)
T ss_dssp -SCCCEEEECCTTSSCCEECCT--TSCCCTTCCBEECTTCEEEEECT-TSCBCCTTCCEEEEEECTTCCCTTCCCEETTC
T ss_pred -CCeEecccccccccceeecCC--CCCCCCCccccCCCCCEEEEECC-CCCCCCCCCceEEEEecCCCCCCeeeccccCC
Confidence 889999999999987655432 22345689999999999999995 58999999999999997 7899999999
Q ss_pred CccCccccCCCCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEE
Q 008946 411 PEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAY 490 (548)
Q Consensus 411 ~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~ 490 (548)
++.+.+.| .+|||+|||+|++++||++++.||+||+||++|++|+|.|||++|.++|.|.+++|++.+++..++.+.++
T Consensus 442 p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~ 520 (580)
T 3etc_A 442 PERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKAT 520 (580)
T ss_dssp HHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred HhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEE
Confidence 99999988 48999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred EEecCCCCCC---HHHHHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHhc
Q 008946 491 VVREAGSRLS---ENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSK 547 (548)
Q Consensus 491 v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~~ 547 (548)
+++.++...+ .++|+++++++|++|++|+.++++++||+|++|||+|++|++++.++
T Consensus 521 vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~q 580 (580)
T 3etc_A 521 IVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQSQ 580 (580)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC---------------------
T ss_pred EEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhcC
Confidence 9987765444 36899999999999999999999999999999999999999998764
No 12
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=4e-78 Score=629.24 Aligned_cols=496 Identities=23% Similarity=0.356 Sum_probs=325.9
Q ss_pred CCHHHHHhcc--CCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCCeE
Q 008946 35 LDVTTFISSR--AHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAII 112 (548)
Q Consensus 35 ~~l~~~~~~~--~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~~ 112 (548)
.++.+++.++ ..|+++|+++. ++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 30 ~tl~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~ 107 (544)
T 3o83_A 30 QPLTRILTVGVQSHPHSLAIICG--ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV 107 (544)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHhCCCceEEEcC--CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence 5788888877 46899999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcCcccc--------cccC--CCCcEE-EecCCCCcccCCccccccccccccCCC
Q 008946 113 TTTNPLNTKQEIAKQIADSKPVLAFTISQLVP--------KLAG--STLPIV-LLDDEKTTSTEGIKTVTTLPQMMRKEP 181 (548)
Q Consensus 113 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~--------~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (548)
+|+++.++.+++.++++.++++++|++..... .+.. .....+ .++.... . .. . ........
T Consensus 108 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~-~---~~~~~~~~ 179 (544)
T 3o83_A 108 LNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT-D---FG-L---LDWIETPA 179 (544)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT-S---EE-H---HHHHHSCC
T ss_pred ecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc-c---cc-h---hhhhhccc
Confidence 99999999999999999999999999876531 1111 122222 2222110 0 00 0 00000011
Q ss_pred CCCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHH-HHHHHHHc
Q 008946 182 SGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAA-FATGLLAS 260 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~ 260 (548)
..........++++++|+|||||||.||+|.++|+++..........+ ....++++++.+|++|.+++.. .++.++..
T Consensus 180 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~ 258 (544)
T 3o83_A 180 ETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-GLNSNTRLLCALPAPHNFMLSSPGALGVLHA 258 (544)
T ss_dssp SSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred ccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-CCCCCCeEEEecCcceEeecchHHHHHHHHc
Confidence 111111345689999999999999999999999999999888877776 4466778899999999988854 57889999
Q ss_pred CCEEEEcCCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeE
Q 008946 261 GSTIVVLSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRI 340 (548)
Q Consensus 261 G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i 340 (548)
|+++++.+.+++..+++.++++++|++.++|+++..+++.... ...+++++|.+++||+++++++.+.+.+.+ ++++
T Consensus 259 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~ 335 (544)
T 3o83_A 259 GGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ--YKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKL 335 (544)
T ss_dssp TCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTT--THHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEE
T ss_pred CCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhh--ccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcE
Confidence 9999999999999999999999999999999999999886554 334578999999999999999999999998 8999
Q ss_pred EeeeccccccCcccccCCccccCCCCcccccC-CCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccccC
Q 008946 341 LQGYGLTESTGIGASTDSLEESRKYGTAGMLS-PSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLD 419 (548)
Q Consensus 341 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~ 419 (548)
++.||+||++..+.... ........++|.|+ ++.+++|+| +++++++.|++|||+|+|+.++.||+++++.+.+.|+
T Consensus 336 ~~~YG~TE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 413 (544)
T 3o83_A 336 QQVFGMAEGLVNYTRLD-DSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFD 413 (544)
T ss_dssp EEEEECTTSCEEECCTT-SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBC
T ss_pred EeeeccccccceeecCC-CchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCC
Confidence 99999999875444322 11122346789996 899999999 6789999999999999999999999999999999998
Q ss_pred CCCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCC
Q 008946 420 SEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRL 499 (548)
Q Consensus 420 ~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 499 (548)
.+|||+|||+|++++||.+++.||+||+||++|++|+|.|||++|.++|.|.+++|++.+++..|+.++++++..+ ...
T Consensus 414 ~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~ 492 (544)
T 3o83_A 414 EDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PEL 492 (544)
T ss_dssp TTCCEEEEEEEEECTTSCEEEEEEEC------------------------------------------------------
T ss_pred CCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CCC
Confidence 8999999999999999999999999999999999999999999999999999999999999888888999988765 456
Q ss_pred CHHHHHHHHHh-ccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHhc
Q 008946 500 SENEVMDFVAR-QVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSK 547 (548)
Q Consensus 500 ~~~~l~~~l~~-~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~~ 547 (548)
+.+++++++++ +|+.|++|+.++++++||+|++||++|++|++++.+.
T Consensus 493 ~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 493 KAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp -------------------------------------------------
T ss_pred CHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 67789999998 7999999999999999999999999999999998753
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.3e-76 Score=614.43 Aligned_cols=490 Identities=22% Similarity=0.314 Sum_probs=411.8
Q ss_pred CCHHHHHhcc--CCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCCeE
Q 008946 35 LDVTTFISSR--AHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAII 112 (548)
Q Consensus 35 ~~l~~~~~~~--~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~~ 112 (548)
+++.+++.++ ..|+++|+++. ++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~ 78 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR--DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAY 78 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCE
T ss_pred CcHHHHHHHHHHHCCCceEEEeC--CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 3677778776 46889999987 6899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccCCCCcEEEecCCCCcccCCccccccccccccCCCCCCccccCCCC
Q 008946 113 TTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRINQ 192 (548)
Q Consensus 113 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (548)
+|+++.++.+++.++++.++++++|++....... ....++..+. .... ................+
T Consensus 79 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--~~~~~~~~~~-----------~~~~--~~~~~~~~~~~~~~~~~ 143 (512)
T 3fce_A 79 IPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--LPVRIVSEDN-----------LKDI--FFTHKGNTPNPEHAVKG 143 (512)
T ss_dssp EEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--CSSEEEETHH-----------HHHH--HHHTTTCCCCGGGSCCT
T ss_pred EeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--cccceechhh-----------hhhh--cccccccCCCccccCCC
Confidence 9999999999999999999999999975432111 0111111100 0000 00001111112234578
Q ss_pred CCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEcCC---
Q 008946 193 DDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSK--- 269 (548)
Q Consensus 193 ~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~--- 269 (548)
+++++++|||||||.||+|.++|+++.+........+ ....++++++.+|++|.+++ ..++.++..|+++++.+.
T Consensus 144 ~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~ 221 (512)
T 3fce_A 144 DENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDKDMI 221 (512)
T ss_dssp TSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCHHHH
T ss_pred CCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCHHHh
Confidence 9999999999999999999999999999888777766 44667889999999999887 568889999999999875
Q ss_pred CCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEEeeeccccc
Q 008946 270 FDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTES 349 (548)
Q Consensus 270 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~ 349 (548)
+++..+++.++++++|++.++|+++..++..... ....++++|.+++||+++++++.+.+.+.|+++++++.||+||+
T Consensus 222 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~ 299 (512)
T 3fce_A 222 ARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASF--SESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEA 299 (512)
T ss_dssp HSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTC--STTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGG
T ss_pred hCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccc--cchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChh
Confidence 6899999999999999999999999998877654 45568899999999999999999999999999999999999999
Q ss_pred cCcccccCCcc---ccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCcccc---CCCCe
Q 008946 350 TGIGASTDSLE---ESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTL---DSEGW 423 (548)
Q Consensus 350 ~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~---~~~~~ 423 (548)
+++++...... ......++|.|.++++++++| +++++++.|+.|||+|+|+.++.||+++++.+.+.| ++++|
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~ 378 (512)
T 3fce_A 300 TVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERA 378 (512)
T ss_dssp SSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEE
T ss_pred hhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEE
Confidence 87765432211 122456789999999999999 668999999999999999999999999999998876 45789
Q ss_pred eecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCCCH--
Q 008946 424 LRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSE-- 501 (548)
Q Consensus 424 ~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~-- 501 (548)
|+|||+|++ +||++++.||+||+||++|++|+|.+||++|.++|.|.+++|++.++...++.+++++++.+....+.
T Consensus 379 ~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~ 457 (512)
T 3fce_A 379 YKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFK 457 (512)
T ss_dssp EEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHH
T ss_pred EeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhh
Confidence 999999999 89999999999999999999999999999999999999999999988888888999998876544433
Q ss_pred --HHHHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHhc
Q 008946 502 --NEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSK 547 (548)
Q Consensus 502 --~~l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~~ 547 (548)
++++++++++|+.|++|+.++++++||+|++||++|++|++++.++
T Consensus 458 ~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 458 LTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp HHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-
T ss_pred hHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhc
Confidence 5789999999999999999999999999999999999999998764
No 14
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2.1e-76 Score=627.73 Aligned_cols=512 Identities=24% Similarity=0.317 Sum_probs=412.6
Q ss_pred CCHHHHHhcc--CCCCCcEEEeC----CCCceeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEECCCCCcHHHHHHHHHH
Q 008946 35 LDVTTFISSR--AHHGRTAFIDA----ATGRHLTFSELWRAVDSVSTCLS-DMGIRKGHVILLLSPNSIFFPVVCLAVMS 107 (548)
Q Consensus 35 ~~l~~~~~~~--~~~~~~a~~~~----~~~~~~Ty~~l~~~~~~la~~L~-~~g~~~g~~V~i~~~~~~~~~v~~lA~~~ 107 (548)
.++.+++.++ ..++++|++.. ..++++||+||+++++++|++|+ ++|+++||+|+++++|++++++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 3455677655 35789999862 23578999999999999999999 89999999999999999999999999999
Q ss_pred cCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccc-------------ccC-CCCc-EEEecCCCCcccCCcc-ccc
Q 008946 108 LGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPK-------------LAG-STLP-IVLLDDEKTTSTEGIK-TVT 171 (548)
Q Consensus 108 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~-------------~~~-~~~~-~~~~~~~~~~~~~~~~-~~~ 171 (548)
+|++++|+++.++.+++.++++++++++||+++..... +.. ..++ +++++........... ...
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 241 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDL 241 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEE
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccc
Confidence 99999999999999999999999999999998765321 111 1222 3444321110000000 000
Q ss_pred cccccccCCCCCCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHH
Q 008946 172 TLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLA 251 (548)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~ 251 (548)
.+.+...... .........++++++|+|||||||.||||+++|.++................++++++..|++|..|..
T Consensus 242 ~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~ 320 (663)
T 1ry2_A 242 DWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHT 320 (663)
T ss_dssp EHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHH
T ss_pred cHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhH
Confidence 0111111111 111122346789999999999999999999999998766543332222456778999999999999987
Q ss_pred HHHHHHHHcCCEEEEcCC----CCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHH
Q 008946 252 AFATGLLASGSTIVVLSK----FDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREV 327 (548)
Q Consensus 252 ~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~ 327 (548)
+.++.++..|+++++.+. +++..+++.++++++|+++++|+++..|.+...+.....+++++|.+++|||++++++
T Consensus 321 ~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~ 400 (663)
T 1ry2_A 321 YVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEV 400 (663)
T ss_dssp HTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHH
T ss_pred HHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHH
Confidence 778899999999999764 5789999999999999999999999999887643224557899999999999999999
Q ss_pred HHHHHHHCC--CCeEEeeeccccccCcccccCC-ccccCCCCcccccCCCceEEEEcCCCCcccCC-CCccEEEEeC--C
Q 008946 328 IEGFVQKYP--KVRILQGYGLTESTGIGASTDS-LEESRKYGTAGMLSPSMEAKIVDPDSGKALLV-NQTGELWLKG--P 401 (548)
Q Consensus 328 ~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~-g~~Gel~v~~--~ 401 (548)
++++.+.++ ++++++.||+||+++.+..... .......+++|.|+++++++|+|++++++++. |+.|||+++| |
T Consensus 401 ~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p 480 (663)
T 1ry2_A 401 WEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWP 480 (663)
T ss_dssp HHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCT
T ss_pred HHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCC
Confidence 999999883 3899999999999876655322 12234568999999999999999757899988 9999999999 5
Q ss_pred cccccccCCCccCccccC--CCCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeec
Q 008946 402 SIMKGYFSNPEATTSTLD--SEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFP 479 (548)
Q Consensus 402 ~~~~~y~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~ 479 (548)
+++.|||++++.+.+.+. .+|||+|||+|++++||+++++||+||+||++|++|++.|||++|.++|.|.+++|++.+
T Consensus 481 ~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~ 560 (663)
T 1ry2_A 481 SFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFN 560 (663)
T ss_dssp TSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCC
T ss_pred chhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEe
Confidence 899999999988776653 378999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeEEEEecCCCC---C-C------HHHHHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHhc
Q 008946 480 DKEAGQYPMAYVVREAGSR---L-S------ENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSK 547 (548)
Q Consensus 480 ~~~~~~~~~~~v~~~~~~~---~-~------~~~l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~~ 547 (548)
++..|+.++++|++.++.. . + .++|++++++++++|++|+.|+++++||+|++||++|++|++++.++
T Consensus 561 ~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 561 DDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred cCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 8888889999999876533 2 2 57899999999999999999999999999999999999999987653
No 15
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=8.4e-76 Score=620.61 Aligned_cols=495 Identities=25% Similarity=0.388 Sum_probs=420.8
Q ss_pred CCHHHHHhccCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCCeEec
Q 008946 35 LDVTTFISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITT 114 (548)
Q Consensus 35 ~~l~~~~~~~~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~~v~ 114 (548)
.++.+++.+++.|+++|+++. ++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 27 ~~l~~~~~~~a~pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vp 104 (617)
T 3rg2_A 27 LPLTDILTRHAASDSIAVIDG--ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL 104 (617)
T ss_dssp CCTTHHHHTTTTCCSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred CCHHHHHHHhhCCCCeEEecC--CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEcc
Confidence 689999999988999999987 789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEEEcCcccccc--------c--CCCCcEEEecCCCCcccCCccccccccccccCCCCCC
Q 008946 115 TNPLNTKQEIAKQIADSKPVLAFTISQLVPKL--------A--GSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGT 184 (548)
Q Consensus 115 l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (548)
+++.++.+++.++++.+++++++++....... . ......+.+...... ......... +...
T Consensus 105 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~ 175 (617)
T 3rg2_A 105 ALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE--------HNLQDAINH-PAED 175 (617)
T ss_dssp ECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST--------TBHHHHHHS-CCSS
T ss_pred CCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc--------cchhhhhcc-cccc
Confidence 99999999999999999999999987654111 0 122333332211110 000000000 1111
Q ss_pred ccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHH-HHHHHHHcCCE
Q 008946 185 LVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAA-FATGLLASGST 263 (548)
Q Consensus 185 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~ 263 (548)
.......++++++|+|||||||.||||+++|+++.+........+ ....++++++.+|++|.+++.. .++.++..|++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~ 254 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGT 254 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCE
Confidence 122334678999999999999999999999999999888877766 3466778888999999888754 57889999999
Q ss_pred EEEcCCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEEee
Q 008946 264 IVVLSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQG 343 (548)
Q Consensus 264 ~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~ 343 (548)
+++.+..++..+++.++++++|++.++|+++..+++..........++++|.+++|||++++++.+.+.+.+ ++++++.
T Consensus 255 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~ 333 (617)
T 3rg2_A 255 VVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQV 333 (617)
T ss_dssp EEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEE
Confidence 999988999999999999999999999999999987654322334688999999999999999999999998 8999999
Q ss_pred eccccccCcccccCCccccCCCCcccccC-CCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccccCCCC
Q 008946 344 YGLTESTGIGASTDSLEESRKYGTAGMLS-PSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEG 422 (548)
Q Consensus 344 yG~tE~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~ 422 (548)
||+||++..+..... .......+.|.|. ++.+++|+| +++++++.|++|||+|+|+.+++||+++++.+.+.|..++
T Consensus 334 YG~tE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~ 411 (617)
T 3rg2_A 334 FGMAEGLVNYTRLDD-SAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANG 411 (617)
T ss_dssp EEETTEEEEECCTTS-CHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTS
T ss_pred eccCcceeecccCCC-cccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCC
Confidence 999998865443221 1112234678887 788999999 5689999999999999999999999999999999999999
Q ss_pred eeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCCCHH
Q 008946 423 WLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSEN 502 (548)
Q Consensus 423 ~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 502 (548)
||+|||+|++++||.++++||+||+||++|++|+|.|||++|.++|.|.+++|++.+++..++.++++++..+ ..+.+
T Consensus 412 ~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~~~~~ 489 (617)
T 3rg2_A 412 FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--PLRAV 489 (617)
T ss_dssp CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCHH
T ss_pred ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--CCCHH
Confidence 9999999999999999999999999999999999999999999999999999999988888888889988764 56788
Q ss_pred HHHHHHHh-ccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHh
Q 008946 503 EVMDFVAR-QVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATS 546 (548)
Q Consensus 503 ~l~~~l~~-~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~ 546 (548)
++++++++ .++.|++|+.++++++||+|++||++|++|++++.+
T Consensus 490 ~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 490 QVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp HHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred HHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence 99999998 699999999999999999999999999999998764
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=8.2e-76 Score=607.86 Aligned_cols=487 Identities=23% Similarity=0.334 Sum_probs=413.3
Q ss_pred CCHHHHHhcc--CCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEECCCCCcHHHHHHHHHHcCCe
Q 008946 35 LDVTTFISSR--AHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDM-GIRKGHVILLLSPNSIFFPVVCLAVMSLGAI 111 (548)
Q Consensus 35 ~~l~~~~~~~--~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~ 111 (548)
+++.+++.++ ..|+++|+++. ++++||+||+++++++|++|++. |.++|++|+++++|++++++++|||+++|++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 78 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHP 78 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCE
Confidence 3677888777 46889999986 78999999999999999999884 8889999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccCCCCcEEEecCCCCcccCCccccccccccccCCCCCCccccCCC
Q 008946 112 ITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRIN 191 (548)
Q Consensus 112 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (548)
++|+++.++.+++.++++.++++++|++..............+..++ ................
T Consensus 79 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~ 141 (511)
T 3e7w_A 79 YIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVSAEE-----------------LLENEGGSVSQDQWVK 141 (511)
T ss_dssp EEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEEEHHH-----------------HHTSCSCCCCGGGSCC
T ss_pred EEecCCCChHHHHHHHHHhCCCCEEEecccccchhcccccceecHhh-----------------hhccccCCccccccCC
Confidence 99999999999999999999999999976533221111111111110 0001111112223456
Q ss_pred CCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEcCC--
Q 008946 192 QDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSK-- 269 (548)
Q Consensus 192 ~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-- 269 (548)
++++++|+|||||||.||+|.++|+++.+........+ ....++++++..|++|.+++ ..++.++..|+++++.+.
T Consensus 142 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~ 219 (511)
T 3e7w_A 142 EHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCVTKDA 219 (511)
T ss_dssp TTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEECCHHH
T ss_pred CCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEcChhh
Confidence 78999999999999999999999999999888777666 44667789999999998887 568889999999999875
Q ss_pred -CCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEEeeecccc
Q 008946 270 -FDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTE 348 (548)
Q Consensus 270 -~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE 348 (548)
+++..+++.++++++|++.++|+++..+++.... ....++++|.+++||+++++++.+.+.+.||++++++.||+||
T Consensus 220 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE 297 (511)
T 3e7w_A 220 VNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF--SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTE 297 (511)
T ss_dssp HHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC--STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGG
T ss_pred hcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc--ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccch
Confidence 6899999999999999999999999999887643 4456889999999999999999999999999999999999999
Q ss_pred ccCcccccCCcc---ccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccccC---CCC
Q 008946 349 STGIGASTDSLE---ESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLD---SEG 422 (548)
Q Consensus 349 ~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~---~~~ 422 (548)
++++++...... ......++|.|.|+++++|+|+ ++++++.|+.|||+|+|+.++.||+++++.+.+.|. +..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~ 376 (511)
T 3e7w_A 298 ATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDE-EGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQW 376 (511)
T ss_dssp GSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECT-TSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSE
T ss_pred heeeeeEEeccccccccCCcCCCcceeCCCEEEEECC-CCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCE
Confidence 987765432111 1223467999999999999994 589999999999999999999999999999988872 223
Q ss_pred eeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCCCH-
Q 008946 423 WLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSE- 501 (548)
Q Consensus 423 ~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~- 501 (548)
||+|||+|++ +||.+++.||+||+||++|++|+|.+||++|.++|.|.+++|++.+++..++.++++++..++...+.
T Consensus 377 ~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~ 455 (511)
T 3e7w_A 377 AYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEF 455 (511)
T ss_dssp EEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHH
T ss_pred EEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchh
Confidence 7999999999 69999999999999999999999999999999999999999999988888889999999876654443
Q ss_pred ---HHHHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHh
Q 008946 502 ---NEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATS 546 (548)
Q Consensus 502 ---~~l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~ 546 (548)
++++++++++|+.|++|+.++++++||+|++|||+|++|++++.+
T Consensus 456 ~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 456 QLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp HHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhh
Confidence 678999999999999999999999999999999999999998875
No 17
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=9.9e-77 Score=618.33 Aligned_cols=497 Identities=26% Similarity=0.430 Sum_probs=376.9
Q ss_pred CCCHHHHHhcc--CCCCCcEEEeC--CCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcC
Q 008946 34 SLDVTTFISSR--AHHGRTAFIDA--ATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLG 109 (548)
Q Consensus 34 ~~~l~~~~~~~--~~~~~~a~~~~--~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G 109 (548)
+.++.+++.++ ..|+++|++.. ..++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 96 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 96 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 46788988876 46889999852 235789999999999999999999999999999999999999999999999999
Q ss_pred CeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccC-----CCCc-EEEecCCCCcccCCccccccccccccCCCCC
Q 008946 110 AIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG-----STLP-IVLLDDEKTTSTEGIKTVTTLPQMMRKEPSG 183 (548)
Q Consensus 110 ~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (548)
++++|++|.++.+++.++++.++++++|++.+..+.+.. .... +++++.... ... ..+.........
T Consensus 97 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~- 169 (541)
T 1v25_A 97 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP---EGY---LAYEEALGEEAD- 169 (541)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC---TTC---EEHHHHCCSCCC-
T ss_pred cEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC---ccc---ccHHHHhhccCC-
Confidence 999999999999999999999999999999876543321 1222 333332110 000 001111111111
Q ss_pred CccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHh--hccccCCCCeEEEEccchHHHHhHHHHHHHHHHcC
Q 008946 184 TLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVL--GRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASG 261 (548)
Q Consensus 184 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G 261 (548)
.....++++++|+|||||||.||+|.++|+++........ ..+ ....++++++.+|++|.+++ ..++.++..|
T Consensus 170 ---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G 244 (541)
T 1v25_A 170 ---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKDVVLPVVPMFHVNAW-CLPYAATLVG 244 (541)
T ss_dssp ---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTCEEEECSCTTSHHHH-THHHHHHHHT
T ss_pred ---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCCEEEEeccchhhhHH-HHHHHHHhcC
Confidence 1234678999999999999999999999999987665532 222 34677899999999999988 4567789999
Q ss_pred CEEEEcCC-CCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeE
Q 008946 262 STIVVLSK-FDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRI 340 (548)
Q Consensus 262 ~~~v~~~~-~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i 340 (548)
+++++.+. +++..+++.++++++|++.++|+++..|++.... ...+++++|.+++||+++++++.+.+ +.+ ++++
T Consensus 245 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~ 320 (541)
T 1v25_A 245 AKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLES--TGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEV 320 (541)
T ss_dssp CEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHH--HTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEE
T ss_pred ceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhc--cCCcchhccEEEECCCCCCHHHHHHH-HHh-CCce
Confidence 99999874 6999999999999999999999999999886543 34567899999999999999999999 666 8999
Q ss_pred EeeeccccccCcccccCCccc---------cCCCCcccccCCCceEEEEcCCCCcccCC--CCccEEEEeCCcccccccC
Q 008946 341 LQGYGLTESTGIGASTDSLEE---------SRKYGTAGMLSPSMEAKIVDPDSGKALLV--NQTGELWLKGPSIMKGYFS 409 (548)
Q Consensus 341 ~~~yG~tE~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~~i~~~~~~~~~~~--g~~Gel~v~~~~~~~~y~~ 409 (548)
++.||+||++++++....... ....+++|.|+|+++++|+|+ ++++++. ++.|||+|+|+.++.||++
T Consensus 321 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~g~~~~~~~~~~GEl~v~g~~v~~GY~~ 399 (541)
T 1v25_A 321 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYG 399 (541)
T ss_dssp EEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECT-TSCBCCSSSCCCEEEEEESTTSBSSCBT
T ss_pred eecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECC-CCCCCCCCCCcceEEEEeCcchhccccC
Confidence 999999999877665422110 012467899999999999994 5788874 3689999999999999999
Q ss_pred CCccCccccCCCCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeE
Q 008946 410 NPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMA 489 (548)
Q Consensus 410 ~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~ 489 (548)
+++.+.+.|..+|||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|.|.+++|++.+++..++.+++
T Consensus 400 ~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a 479 (541)
T 1v25_A 400 NEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLA 479 (541)
T ss_dssp CHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEE
T ss_pred ChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEE
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred EEEecCCCCCCHHHHHHHHHh-ccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHhcC
Q 008946 490 YVVREAGSRLSENEVMDFVAR-QVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 548 (548)
Q Consensus 490 ~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~~~ 548 (548)
+++.. +...+.+++++++++ +|+.|++|+.++++++||+|++||++|++|++++.+++
T Consensus 480 ~vv~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 538 (541)
T 1v25_A 480 VVVPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYY 538 (541)
T ss_dssp CC--------------------CCCTTTSCSBC--------------CCTTHHHHSTTSS
T ss_pred EEEEC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhh
Confidence 88866 445567889999999 89999999999999999999999999999999987753
No 18
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=6.7e-77 Score=616.05 Aligned_cols=488 Identities=26% Similarity=0.403 Sum_probs=316.0
Q ss_pred CCCHHHHHhcc--CCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCCe
Q 008946 34 SLDVTTFISSR--AHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAI 111 (548)
Q Consensus 34 ~~~l~~~~~~~--~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~ 111 (548)
+.++.+++.++ ..|+++|+++. ++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 82 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMVD--GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAI 82 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHCCCceEEEEC--CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 46899999887 46899999986 789999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccC-----CCCc-EEEecCCCCcccCCccccccccccccCCCCCCc
Q 008946 112 ITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG-----STLP-IVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTL 185 (548)
Q Consensus 112 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (548)
++|++|.++.+++.++++.++++++|++......+.. .... ++.+++... . . ............
T Consensus 83 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~---~~~~~~~~~~~~ 152 (509)
T 3ivr_A 83 LLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG-P------F---APFKDLASDTPF 152 (509)
T ss_dssp EEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS-S------C---EEGGGTCCCSCC
T ss_pred EEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc-C------h---hhHhhccCCCCC
Confidence 9999999999999999999999999999876544211 1222 222322110 0 0 000000111112
Q ss_pred cccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEE
Q 008946 186 VRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIV 265 (548)
Q Consensus 186 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 265 (548)
......++++++|+|||||||.||+|.++|+++.+........+ ....++++++.+|++|.+|+...+...+. |+..+
T Consensus 153 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~~~-~g~~~ 230 (509)
T 3ivr_A 153 SAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVNLGMLPLFHVTGLGLMLTLQQA-GGASV 230 (509)
T ss_dssp CCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHH-TCEEE
T ss_pred CcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEEEeCCCcchhHHHHHHHHHHh-CCcEE
Confidence 22345789999999999999999999999999999888877776 44667789999999999998555444454 44555
Q ss_pred EcCCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEEeeec
Q 008946 266 VLSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYG 345 (548)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~yG 345 (548)
+...+++..+++.++++++|++.++|+++..+++... ...++++|.++.+|++ +..+.+.+.+|++++++.||
T Consensus 231 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG 303 (509)
T 3ivr_A 231 IAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA----PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFG 303 (509)
T ss_dssp ECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC----GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEE
T ss_pred EecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc----ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccC
Confidence 5557899999999999999999999999999988652 3347889999999987 88899999999999999999
Q ss_pred cccccCcccccCCccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccccCCCCeee
Q 008946 346 LTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLR 425 (548)
Q Consensus 346 ~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~~ 425 (548)
+||++++++..... .....+|.|+++++++|+|+ ++++++.|+.|||+|+|++++.||+++++.+.+.|. +|||+
T Consensus 304 ~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d~-~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g~~~ 378 (509)
T 3ivr_A 304 QSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVDA-EDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHH 378 (509)
T ss_dssp EGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEECT-TSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTG-GGSEE
T ss_pred ccccccccccCccc---cCCCcccccCCCcEEEEECC-CCCCCCCCCceEEEEecCCccccccCCHHHhHHHhh-cCCcc
Confidence 99998776653321 22345899999999999995 489999999999999999999999999999998884 89999
Q ss_pred cCceeEEcCCCcEEEEccc--CceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCCCHHH
Q 008946 426 TGDLCYIDDDGFIFIVDRL--KELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENE 503 (548)
Q Consensus 426 TGD~~~~~~~g~~~~~GR~--~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 503 (548)
|||+|++++||++++.||+ +|+||++|++|+|.+||++|.++|.|.+++|++.+++..++.++++++..++...+.++
T Consensus 379 TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 458 (509)
T 3ivr_A 379 TGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADA 458 (509)
T ss_dssp EEEEEEECTTSCEEEEEEC-------------------------------------------------------------
T ss_pred cccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHH
Confidence 9999999999999999999 89999999999999999999999999999999999988888999999988777778899
Q ss_pred HHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHhc
Q 008946 504 VMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSK 547 (548)
Q Consensus 504 l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~~ 547 (548)
++++++++|+.|++|+.++++++||+|++|||+|++|++++.+.
T Consensus 459 l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 459 LAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999988763
No 19
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.9e-75 Score=610.33 Aligned_cols=487 Identities=22% Similarity=0.298 Sum_probs=404.1
Q ss_pred ccCCCCCCCCCCCCCCHHHHHhcc--CCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcH
Q 008946 21 YSKRKPVSLPPNESLDVTTFISSR--AHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFF 98 (548)
Q Consensus 21 ~~~~~~~~~p~~~~~~l~~~~~~~--~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~ 98 (548)
.++.....+|.. .++.+++.++ ..|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|++++
T Consensus 27 ~~~~~~~~~~~~--~~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 102 (563)
T 1amu_A 27 AVNNTKAEYPRD--KTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL 102 (563)
T ss_dssp HTTCCCCCCCTT--CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred HhCCCCCCCCCC--CcHHHHHHHHHHHCCCCeEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH
Confidence 355444444443 5799998876 46889999986 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccCC--CCcEEEecCCCCcccCCcccccccccc
Q 008946 99 PVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGS--TLPIVLLDDEKTTSTEGIKTVTTLPQM 176 (548)
Q Consensus 99 ~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (548)
++++|||+++|++++|+++.++.+++.++++.++++++|++......+... ...+..++.... ..
T Consensus 103 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~- 169 (563)
T 1amu_A 103 FIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTI------------KI- 169 (563)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTT------------TT-
T ss_pred HHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhh------------cc-
Confidence 999999999999999999999999999999999999999998665443321 112222221100 00
Q ss_pred ccCCCCCCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHH
Q 008946 177 MRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATG 256 (548)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~ 256 (548)
... ........++++++++|||||||.||||+++|+++.+........+ ....++++++..|++|..++ ..++.
T Consensus 170 --~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~-~~~~~ 243 (563)
T 1amu_A 170 --REG--TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASV-WEMFM 243 (563)
T ss_dssp --SCC--SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHH-HHHHH
T ss_pred --ccC--ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHH-HHHHH
Confidence 000 0111234678999999999999999999999999988877766665 34567788889999998877 56778
Q ss_pred HHHcCCEEEEcCC---CCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHH
Q 008946 257 LLASGSTIVVLSK---FDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQ 333 (548)
Q Consensus 257 ~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~ 333 (548)
++..|+++++.+. .++..+++.++++++|++.++|+++..+.. ..++++|.+++||+++++++.+.+.+
T Consensus 244 ~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~--------~~~~~lr~~~~gG~~l~~~~~~~~~~ 315 (563)
T 1amu_A 244 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP--------ERILSIQTLITAGSATSPSLVNKWKE 315 (563)
T ss_dssp HHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT--------TTCCSCSEEEEESSCCCHHHHHHHTT
T ss_pred HHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh--------cccccccEEEEEEecCCHHHHHHHHh
Confidence 9999999999875 689999999999999999999998876632 23678999999999999999998876
Q ss_pred HCCCCeEEeeeccccccCcccccCCcc-ccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCc
Q 008946 334 KYPKVRILQGYGLTESTGIGASTDSLE-ESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPE 412 (548)
Q Consensus 334 ~~~~~~i~~~yG~tE~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~ 412 (548)
. +++++.||+||++.+++...... ......++|.|+++++++|+| +++++++.|+.|||+|+|++++.|||++++
T Consensus 316 ~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe 391 (563)
T 1amu_A 316 K---VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPE 391 (563)
T ss_dssp T---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHH
T ss_pred C---CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCch
Confidence 3 78999999999987665432211 122456899999999999999 568999999999999999999999999999
Q ss_pred cCccccC------CCCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCce
Q 008946 413 ATTSTLD------SEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQY 486 (548)
Q Consensus 413 ~~~~~~~------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~ 486 (548)
.+.+.|. .++||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|.|.+++|++.+++..++.
T Consensus 392 ~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~ 471 (563)
T 1amu_A 392 LTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPY 471 (563)
T ss_dssp HHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEE
T ss_pred hhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeE
Confidence 8887773 2469999999999999999999999999999999999999999999999999999999998888888
Q ss_pred eeEEEEecCCCCCCHHHHHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHHH
Q 008946 487 PMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLA 544 (548)
Q Consensus 487 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~ 544 (548)
++++++... ..+.++++++++++|+.|++|+.++++++||+|++||++|++|++..
T Consensus 472 ~~a~vv~~~--~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 472 LCAYFVSEK--HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp EEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred EEEEEEeCC--CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 899988653 46788999999999999999999999999999999999999997653
No 20
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=4.4e-76 Score=617.39 Aligned_cols=480 Identities=24% Similarity=0.344 Sum_probs=316.3
Q ss_pred CCCHHHHHhcc--CCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCCe
Q 008946 34 SLDVTTFISSR--AHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAI 111 (548)
Q Consensus 34 ~~~l~~~~~~~--~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~ 111 (548)
..++++++.++ ..|+++|+++. ++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 74 ~~~l~~~l~~~a~~~pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 151 (570)
T 4gr5_A 74 GACVHELFEAQAARAPDAVALLHE--ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGG 151 (570)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHCCCCeEEECC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCE
Confidence 36899999887 46889999986 789999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccCCCCcEEEecCCCCcccCCccccccccccccCCCCCCccccCCC
Q 008946 112 ITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRIN 191 (548)
Q Consensus 112 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (548)
++|++|.++.+++.+++++++++++|++......+.. ...+.+.+... .............
T Consensus 152 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 212 (570)
T 4gr5_A 152 YTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG--TTTLYVEDEAA-----------------SDAPAGNLATGVG 212 (570)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCS--SEEEECCC------------------------CCCCCCCCC
T ss_pred EEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccC--Ccceeeecccc-----------------ccccccccCCCCC
Confidence 9999999999999999999999999999876544322 11122111100 0000011122356
Q ss_pred CCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEcC--C
Q 008946 192 QDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLS--K 269 (548)
Q Consensus 192 ~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~ 269 (548)
++++++|+|||||||.||||+++|+++.+.... ...+ ....++++++.+|++|..+. ..++.++..|+++++.+ .
T Consensus 213 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~ 289 (570)
T 4gr5_A 213 PEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQSGQN 289 (570)
T ss_dssp TTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECSSSS
T ss_pred CCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcCCcc
Confidence 899999999999999999999999998765543 2222 45667899999999885554 56778999999999976 4
Q ss_pred CCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEEeeeccccc
Q 008946 270 FDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTES 349 (548)
Q Consensus 270 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~ 349 (548)
+++..+++.++++++|++.++|+++..|++.... .++++|.+++||+++++++.+.+.+.++++++++.||+||+
T Consensus 290 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~ 364 (570)
T 4gr5_A 290 PDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE-----AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAES 364 (570)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGG
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhh
Confidence 6899999999999999999999999999875432 37889999999999999999999999989999999999999
Q ss_pred cCcccccCCcc--ccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccccCC-------
Q 008946 350 TGIGASTDSLE--ESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDS------- 420 (548)
Q Consensus 350 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~------- 420 (548)
+++.+...... ......++|.|+++++++|+| +++++++.|++|||+|+|++++.||+++++.+.+.|..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~ 443 (570)
T 4gr5_A 365 MGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPG 443 (570)
T ss_dssp CSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSS
T ss_pred eeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCC
Confidence 87765432211 122345689999999999999 56899999999999999999999999999998887743
Q ss_pred -CCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCC-CC
Q 008946 421 -EGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAG-SR 498 (548)
Q Consensus 421 -~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~ 498 (548)
++||+|||+|++++||++++.||+||+||++|++|+|.|||++|.++|.|.+++|++.+++..++.++++++.... ..
T Consensus 444 ~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~ 523 (570)
T 4gr5_A 444 GERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP 523 (570)
T ss_dssp CCEEEEEEEEEEECTTSCEEEEEC--------------------------------------------------------
T ss_pred CCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC
Confidence 3799999999999999999999999999999999999999999999999999999999888888888898887543 35
Q ss_pred CCHHHHHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 008946 499 LSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKL 543 (548)
Q Consensus 499 ~~~~~l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~ 543 (548)
.+.++|+++++++|+.|++|+.++++++||+|++|||+|++|++.
T Consensus 524 ~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 524 PDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ---------------------------------------------
T ss_pred cCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 677899999999999999999999999999999999999999875
No 21
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3.5e-75 Score=605.30 Aligned_cols=490 Identities=22% Similarity=0.346 Sum_probs=401.8
Q ss_pred CCHHHHHhcc--CCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCCeE
Q 008946 35 LDVTTFISSR--AHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAII 112 (548)
Q Consensus 35 ~~l~~~~~~~--~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~~ 112 (548)
.++.+++.++ ..|+++|+.+. ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCL--GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY 81 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHCCCCcceecC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 4688888777 46789999986 7899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccCCCCcEEEecCCCCcccCCccccccccccccCCCCCCccccCCCC
Q 008946 113 TTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRINQ 192 (548)
Q Consensus 113 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (548)
+|+++.++.+++.++++.++++++|++.+....+. ...++.+.+. ........+ ........+
T Consensus 82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~--~~~~~~~~~ 144 (521)
T 3l8c_A 82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--GISLVSLSEI-------------ESAKLAEMP--YERTHSVKG 144 (521)
T ss_dssp EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--TSEEEEHHHH-------------HHHHHHTCC--CCCSSCCCT
T ss_pred EecCccccHHHHHHHHHhCCCCEEEecCccccccc--cCcccchhhh-------------hhcccccCC--cccCCCCCC
Confidence 99999999999999999999999999876543332 1122211110 000000111 111234578
Q ss_pred CCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhcc-ccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEcCCC-
Q 008946 193 DDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRF-KLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKF- 270 (548)
Q Consensus 193 ~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~- 270 (548)
+++++++|||||||.||+|.++|+++.+......... .....++++++..|++|..+. ..++.++..|+++++.+..
T Consensus 145 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~~~~~~ 223 (521)
T 3l8c_A 145 DDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFALPKEL 223 (521)
T ss_dssp TSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEECCGGG
T ss_pred CCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEEcCHHH
Confidence 9999999999999999999999999998776655442 234667788888999888776 5677889999999998753
Q ss_pred --CHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEEeeecccc
Q 008946 271 --DMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTE 348 (548)
Q Consensus 271 --~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE 348 (548)
++..+++.+.++++|++.++|+++..++..... ....++++|.+++||+++++++.+.+.+.++++++++.||+||
T Consensus 224 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE 301 (521)
T 3l8c_A 224 VADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF--CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTE 301 (521)
T ss_dssp TTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC--STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred hhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc--ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccH
Confidence 899999999999999999999999988876543 4456889999999999999999999999999999999999999
Q ss_pred ccCcccccCCcc---ccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCcccc---CCCC
Q 008946 349 STGIGASTDSLE---ESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTL---DSEG 422 (548)
Q Consensus 349 ~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~---~~~~ 422 (548)
++++++...... ......++|.|.|+++++|+| +++++++.|+.|||+|+|+.++.||+++++.+.+.| +.++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~ 380 (521)
T 3l8c_A 302 ATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQP 380 (521)
T ss_dssp GSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEE
T ss_pred HhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCce
Confidence 987765432111 123446899999999999999 568999999999999999999999999999998877 5678
Q ss_pred eeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCC-CCceeeEEEEecCCCCCC-
Q 008946 423 WLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKE-AGQYPMAYVVREAGSRLS- 500 (548)
Q Consensus 423 ~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~- 500 (548)
||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|.|.+++|++..+.. .++.++++++..++...+
T Consensus 381 ~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~ 460 (521)
T 3l8c_A 381 AYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERF 460 (521)
T ss_dssp EEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGC
T ss_pred eeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccccc
Confidence 999999999999999999999999999999999999999999999999999999887544 457788999887653321
Q ss_pred ------HHHHHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHhc
Q 008946 501 ------ENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSK 547 (548)
Q Consensus 501 ------~~~l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~~ 547 (548)
.++++++++++|+.|++|+.++++++||+|++|||+|++|++++.++
T Consensus 461 ~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 461 DRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp SSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC--
T ss_pred ccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcC
Confidence 46799999999999999999999999999999999999999988654
No 22
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=5.3e-75 Score=611.69 Aligned_cols=476 Identities=19% Similarity=0.211 Sum_probs=392.1
Q ss_pred CCCCHHHHHhcc--CCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCC
Q 008946 33 ESLDVTTFISSR--AHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGA 110 (548)
Q Consensus 33 ~~~~l~~~~~~~--~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~ 110 (548)
...++.+++.++ ..|+++|+++. ++++||+||.++++++|++|++.|+++|++|+++++|++++++++|||+++|+
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa 102 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR--FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGH 102 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence 346899999887 46899999987 78999999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccCCCCcEEEecCCCCcccCCccccccccccccCCCCCCccccCC
Q 008946 111 IITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRI 190 (548)
Q Consensus 111 ~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (548)
+++|++|.++.+++.++++.+++++++++........ ......+... .........+..
T Consensus 103 ~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--~~~~~~~~~~-------------------~~~~~~~~~~~~ 161 (620)
T 4dg8_A 103 HYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--GLPCVPVRHL-------------------PAAPASVARPCF 161 (620)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--TSCEEEGGGC-------------------CCCCCCSSCCCC
T ss_pred EEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--CCceeeeccC-------------------CcCCccccCCCC
Confidence 9999999999999999999999999997654332211 1111111100 000001112234
Q ss_pred CCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEcC--
Q 008946 191 NQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLS-- 268 (548)
Q Consensus 191 ~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-- 268 (548)
.++++++|+|||||||.||||+++|+++.+.... ...+ ....+++++...|++|..+. ..++.++..|+++++.+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~ 238 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVLNDLG 238 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCSS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEeCccc
Confidence 6899999999999999999999999999776544 2233 45677888999999998887 56889999999999964
Q ss_pred CCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEEeeecccc
Q 008946 269 KFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTE 348 (548)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE 348 (548)
.+++..+++.++++++|++.++|+++..+++... ..++++|.+++|||+++++..+.+.+.+++++++|.||+||
T Consensus 239 ~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 313 (620)
T 4dg8_A 239 PLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-----DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTE 313 (620)
T ss_dssp SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-----hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhh
Confidence 5799999999999999999999999999986432 24788999999999999999999988888999999999999
Q ss_pred ccCcccccCC--ccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccccCCC-----
Q 008946 349 STGIGASTDS--LEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSE----- 421 (548)
Q Consensus 349 ~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~----- 421 (548)
++.+++.... ........++|.|+++++++|+|++....++.|++|||+|+|+.+++||+++++.+.+.|..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~ 393 (620)
T 4dg8_A 314 NTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGR 393 (620)
T ss_dssp GCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTE
T ss_pred hhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCC
Confidence 9876654221 222334578999999999999996644448899999999999999999999999998888543
Q ss_pred --CeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCC
Q 008946 422 --GWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRL 499 (548)
Q Consensus 422 --~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 499 (548)
+||+|||+|++++||.+++.||+||+||++|++|+|.|||++|.++|.|.+++|++.+++..+. ++++++...
T Consensus 394 ~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~-lv~~~~~~~---- 468 (620)
T 4dg8_A 394 LLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ-LLCAWTGKA---- 468 (620)
T ss_dssp EEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE-EEEEEEECT----
T ss_pred CceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceE-EEEEEecCh----
Confidence 7999999999999999999999999999999999999999999999999999999887764443 344444321
Q ss_pred CHHHHHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHh
Q 008946 500 SENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATS 546 (548)
Q Consensus 500 ~~~~l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~ 546 (548)
+++.++++++|+.|++|+.++++++||+|++||++|++|++++.+
T Consensus 469 --~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 469 --DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp --TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred --HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence 233456778899999999999999999999999999999988754
No 23
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.9e-74 Score=599.18 Aligned_cols=498 Identities=25% Similarity=0.373 Sum_probs=397.0
Q ss_pred CCCCCCCHHHHHhccC-CCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHc
Q 008946 30 PPNESLDVTTFISSRA-HHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSL 108 (548)
Q Consensus 30 p~~~~~~l~~~~~~~~-~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~ 108 (548)
++....++.+++.+++ .|+++|+++. ++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 19 ~p~~~~~~~~~l~~~~~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 96 (529)
T 2v7b_A 19 PPALFNFAAYLFRLNETRAGKTAYIDD--TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYA 96 (529)
T ss_dssp ---CCCHHHHHHHHTGGGTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHH
T ss_pred CccceeHHHHHHHhhhccCCceEEEeC--CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHc
Confidence 3333344778877653 6788999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccC-----CC--CcEEEecCCCCcccCCccccccccccccCCC
Q 008946 109 GAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG-----ST--LPIVLLDDEKTTSTEGIKTVTTLPQMMRKEP 181 (548)
Q Consensus 109 G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (548)
|++++|+++.++.+++.+++++++++++|++....+.+.. .. ..+++.+...... .. ...+........
T Consensus 97 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~ 172 (529)
T 2v7b_A 97 GVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEP-RL---APLFEELIDAAA 172 (529)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC-------C---CCBHHHHHHTSC
T ss_pred CceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEeccccccc-cc---ccchhhhhccCC
Confidence 9999999999999999999999999999998776543321 11 2223323211000 00 000111111011
Q ss_pred CCCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHH-HHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHHHHHc
Q 008946 182 SGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNL-IAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLAS 260 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~ 260 (548)
.........++++++++|||||||.||+|.++|+++ ..........+ ....++++++..|++|.+|+...++.++..
T Consensus 173 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 250 (529)
T 2v7b_A 173 -PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAENDVVFSAAKLFFAYGLGNGLTFPLSV 250 (529)
T ss_dssp -CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTCEEEESSCTTSHHHHHHHTHHHHHH
T ss_pred -CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCcEEEEeecHHHHHHHHHHHHHHHhc
Confidence 011122356799999999999999999999999998 45444333333 446778999999999999987777788999
Q ss_pred CCEEEEc-CCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCe
Q 008946 261 GSTIVVL-SKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVR 339 (548)
Q Consensus 261 G~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~ 339 (548)
|+++++. ..+++..+++.+.++++|++.++|+++..+++.... ......++|.+++||+++++++.+.+.+.+ +++
T Consensus 251 G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~ 327 (529)
T 2v7b_A 251 GATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL--PARADVAIRICTSAGEALPREIGERFTAHF-GCE 327 (529)
T ss_dssp TCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC--CCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCC
T ss_pred CcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc--ccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCc
Confidence 9999987 568999999999999999999999999999876532 111123799999999999999999999988 889
Q ss_pred EEeeeccccccCcccccCCccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccccC
Q 008946 340 ILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLD 419 (548)
Q Consensus 340 i~~~yG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~ 419 (548)
+++.||+||++.+...... .....+++|.|.++++++|+| +++++++.|+.|||+|+|+.++.||+++++.+.+.|.
T Consensus 328 i~~~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~ 404 (529)
T 2v7b_A 328 ILDGIGSTEMLHIFLSNRA--GAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL 404 (529)
T ss_dssp EEEEEECTTTSSEEEECCT--TCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE
T ss_pred eeeeEchhhcCceeecccc--CCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhh
Confidence 9999999999766554322 224567899999999999999 5689999999999999999999999999999988884
Q ss_pred CCCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCC
Q 008946 420 SEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRL 499 (548)
Q Consensus 420 ~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 499 (548)
++||+|||++++++||++++.||+||+||++|++|+|.+||++|.++|.|.+++|++. ++..++.++++++..++...
T Consensus 405 -~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~ 482 (529)
T 2v7b_A 405 -GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAP 482 (529)
T ss_dssp -TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCC
T ss_pred -cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCc
Confidence 7999999999999999999999999999999999999999999999999999999998 55667788888887655321
Q ss_pred ---CHHHHHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 008946 500 ---SENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKL 543 (548)
Q Consensus 500 ---~~~~l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~ 543 (548)
..++++++++++|+.|++|+.++++++||+|++||++|++|+++
T Consensus 483 ~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 483 SEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529 (529)
T ss_dssp CHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC-
T ss_pred chhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhhC
Confidence 24689999999999999999999999999999999999999864
No 24
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.3e-74 Score=597.93 Aligned_cols=487 Identities=27% Similarity=0.410 Sum_probs=382.4
Q ss_pred CHHHHHhcc--CCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCCeEe
Q 008946 36 DVTTFISSR--AHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIIT 113 (548)
Q Consensus 36 ~l~~~~~~~--~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~~v 113 (548)
++.+++.++ ..|+++|+++. ++++||+||+++++++|++|++. +||+|+++++|++++++++|||+++|++++
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 76 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG--QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIA 76 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHhcCCceEEEeC--CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEE
Confidence 455666665 46889999986 68999999999999999999986 899999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccC----CCCcEEEecCCCCc---ccCCccccccccccccCCCCCCcc
Q 008946 114 TTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG----STLPIVLLDDEKTT---STEGIKTVTTLPQMMRKEPSGTLV 186 (548)
Q Consensus 114 ~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 186 (548)
|+++.++.+++.++++.++++++|++......... .....+........ ........................
T Consensus 77 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (501)
T 3ipl_A 77 MINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNIL 156 (501)
T ss_dssp ECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CCHHHHT
T ss_pred ecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCccccc
Confidence 99999999999999999999999998775543311 11110000000000 000000000000000000000111
Q ss_pred ccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEE
Q 008946 187 RDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVV 266 (548)
Q Consensus 187 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 266 (548)
.....++++++++|||||||.||+|.++|+++..........+ ....++++++..|++|.+|+. .++.++..|+++++
T Consensus 157 ~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~ 234 (501)
T 3ipl_A 157 NTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWLSVLPIYHISGLS-VLLRAVIEGFTVRI 234 (501)
T ss_dssp CCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEE
T ss_pred ccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEEEeCcHHHHHHHH-HHHHHHHcCceEEe
Confidence 2345789999999999999999999999999998888777666 446677889999999999984 47889999999999
Q ss_pred cCCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEEeeecc
Q 008946 267 LSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGL 346 (548)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~ 346 (548)
.+.+++..+++.++++++|++.++|+++..|++.... . ..++|.+++||+++++++.+.+.+ + ++++++.||+
T Consensus 235 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~---~~~lr~i~~gG~~l~~~~~~~~~~-~-~~~~~~~YG~ 307 (501)
T 3ipl_A 235 VDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH--E---PYNLQKILLGGAKLSATMIETALQ-Y-NLPIYNSFGM 307 (501)
T ss_dssp CSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC--S---CTTCCEEEECSSCCCHHHHHHHHH-T-TCCEEEEEEE
T ss_pred CCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC--C---cCcccEEEEeCCCCCHHHHHHHHH-h-CCCEeccccc
Confidence 9999999999999999999999999999999876543 1 237999999999999999999887 4 8999999999
Q ss_pred ccccCcccccCCccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccccCCCCeeec
Q 008946 347 TESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRT 426 (548)
Q Consensus 347 tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~~T 426 (548)
||+++.+............+++|.|+++++++++|++ .|+.|||+|+|+.++.||+++++.+.. + .+|||+|
T Consensus 308 TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~T 379 (501)
T 3ipl_A 308 TETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNT 379 (501)
T ss_dssp GGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEE
T ss_pred cccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCCceec
Confidence 9998755543322223356789999999999999965 467899999999999999999998887 5 6899999
Q ss_pred CceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCCCHHHHHH
Q 008946 427 GDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMD 506 (548)
Q Consensus 427 GD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 506 (548)
||+|++++||++++.||+||+||++|++|+|.+||++|.++|.|.+++|++.+++..++.++++++.. ...+.+++++
T Consensus 380 GDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~~~l~~ 457 (501)
T 3ipl_A 380 GDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKAQLIA 457 (501)
T ss_dssp EEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCHHHHHH
T ss_pred CCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888888863 4578899999
Q ss_pred HHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHh
Q 008946 507 FVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATS 546 (548)
Q Consensus 507 ~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~ 546 (548)
+++++|+.|++|+.++++++||+|++|||+|++|++....
T Consensus 458 ~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 458 YLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp HHHHHSCGGGSCSEEEECSSCC------------------
T ss_pred HHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence 9999999999999999999999999999999999987654
No 25
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3.3e-75 Score=601.28 Aligned_cols=475 Identities=27% Similarity=0.424 Sum_probs=385.3
Q ss_pred CCHHHHHhccC--CC-CCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCCe
Q 008946 35 LDVTTFISSRA--HH-GRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAI 111 (548)
Q Consensus 35 ~~l~~~~~~~~--~~-~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~ 111 (548)
.++.+++..++ .+ +++|+++. ++++||+||.++++++|++|. .|++|+++++|++++++++|||+++|++
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~ 94 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFG--ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVA 94 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCC
T ss_pred chhHHHHHHHHHhCCCCCeEEEEC--CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 45666676653 34 48999987 789999999999999999884 3889999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccCCCCcEEEecCCCCcccCCccccccccccccCCCCCCccccCCC
Q 008946 112 ITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRIN 191 (548)
Q Consensus 112 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (548)
++|++|.++.+++.++++.++++++|++.+............+.++... ..........
T Consensus 95 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~ 153 (505)
T 3nyq_A 95 AVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVRA---------------------RGAVPEDGAD 153 (505)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTTC---------------------CCCCCCCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhcccccccccccc---------------------ccCCCCCCCC
Confidence 9999999999999999999999999998652211111122222211100 0011122346
Q ss_pred CCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEcCCCC
Q 008946 192 QDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFD 271 (548)
Q Consensus 192 ~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~ 271 (548)
++++++|+|||||||.||+|+++|+++.+........+ ....++++++.+|++|.+|+...++.++..|+++++.+.++
T Consensus 154 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~ 232 (505)
T 3nyq_A 154 DGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFS 232 (505)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCC
T ss_pred CCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 78999999999999999999999999999888777766 44667788889999999998777889999999999999999
Q ss_pred HHHHHHHHhhccceEEecchHHHHHHHhCccccc-ccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEEeeecccccc
Q 008946 272 MHEMLSSISKYRATYLPLVPPILVALISGADQIR-SKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTEST 350 (548)
Q Consensus 272 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~ 350 (548)
+..+++.+ ++++|+++++|+++..+++...... ....++++|.+++||+++++++.+++.+.+ ++++++.||+||++
T Consensus 233 ~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~ 310 (505)
T 3nyq_A 233 TEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETL 310 (505)
T ss_dssp HHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTE
T ss_pred hHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcc
Confidence 99999999 7899999999999999987543210 123467899999999999999999999988 88999999999998
Q ss_pred CcccccCCccccCCCCcccccCCCceEEEEcCCCCcccCC---CCccEEEEeCCcccccccCCCccCccccCCCCeeecC
Q 008946 351 GIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLV---NQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTG 427 (548)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~---g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~~TG 427 (548)
..+.... ......+++|.|+++++++|+|+ ++++++. |++|||+|+|+.++.||+++++.+.+.|..+|||+||
T Consensus 311 ~~~~~~~--~~~~~~~~vG~p~~~~~~~i~d~-~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TG 387 (505)
T 3nyq_A 311 MNTSVRA--DGEPRAGTVGVPLPGVELRLVEE-DGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTG 387 (505)
T ss_dssp EEEECCT--TSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEE
T ss_pred cccccCC--CCCCCCCCcccCCCCCEEEEECC-CCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccC
Confidence 7665432 23345678999999999999994 4777765 8999999999999999999999999999889999999
Q ss_pred ceeEEcCCCcEEEEccc-CceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecC-CCCCCHHHHH
Q 008946 428 DLCYIDDDGFIFIVDRL-KELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREA-GSRLSENEVM 505 (548)
Q Consensus 428 D~~~~~~~g~~~~~GR~-~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~ 505 (548)
|+|++++||.+++.||+ ||+||++|++|+|.|||++|.++|.|.+++|++.+++..++.+++++++.+ ....+.++++
T Consensus 388 Dl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~ 467 (505)
T 3nyq_A 388 DMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLA 467 (505)
T ss_dssp EEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHH
T ss_pred CeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHH
Confidence 99999999999999998 589999999999999999999999999999999999888999999999875 3456788999
Q ss_pred HHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 008946 506 DFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKL 543 (548)
Q Consensus 506 ~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~ 543 (548)
++++++|+.|++|+.++++++||+|++||++|++|++.
T Consensus 468 ~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 505 (505)
T 3nyq_A 468 DHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNRD 505 (505)
T ss_dssp HHHHHHTCGGGSCSEEEECSCCCC--------------
T ss_pred HHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhccC
Confidence 99999999999999999999999999999999999873
No 26
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3.6e-74 Score=601.49 Aligned_cols=493 Identities=22% Similarity=0.317 Sum_probs=408.6
Q ss_pred CHHHHHhcc--C-----CCCCcEEEeCC---CCceeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEECCCCCcHHHHHHH
Q 008946 36 DVTTFISSR--A-----HHGRTAFIDAA---TGRHLTFSELWRAVDSVSTCLSDM-GIRKGHVILLLSPNSIFFPVVCLA 104 (548)
Q Consensus 36 ~l~~~~~~~--~-----~~~~~a~~~~~---~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~i~~~~~~~~~v~~lA 104 (548)
++.+++.++ . .|+++|+++.+ .++++||+||.++++++|++|++. |+++||+|+++++|++++++++||
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA 118 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG 118 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 455777655 3 67899998632 247899999999999999999998 999999999999999999999999
Q ss_pred HHHcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccC-----CCCc-EEEecCCCCcccCCcccccccccccc
Q 008946 105 VMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAG-----STLP-IVLLDDEKTTSTEGIKTVTTLPQMMR 178 (548)
Q Consensus 105 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (548)
|+++|++++|+++.++.+++.++++.++++++|++....+.+.. ..+. ++.+++... ... ..+.....
T Consensus 119 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~ 192 (570)
T 3c5e_A 119 CIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC---DGW---LNFKKLLN 192 (570)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC---TTS---EEHHHHHH
T ss_pred HHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc---ccc---ccHHHHhh
Confidence 99999999999999999999999999999999998876544321 1222 333332110 000 00110000
Q ss_pred CCCCCCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHH--HHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHH
Q 008946 179 KEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIA--MVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATG 256 (548)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~ 256 (548)
.... ........++++++|+|||||||.||+|.++|+ ++. ..... ..+ ....++++++..|++|.+++...++.
T Consensus 193 ~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-~~~~~d~~~~~~p~~~~~~~~~~~~~ 268 (570)
T 3c5e_A 193 EAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-GLQASDIMWTISDTGWILNILCSLME 268 (570)
T ss_dssp HSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-SCCTTCEEEECCCTTSHHHHHHTTHH
T ss_pred cccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-CCCCCceEEEcCchHHHHHHHHHHHH
Confidence 0110 111123467899999999999999999999999 444 33333 333 44677889999999999998667888
Q ss_pred HHHcCCEEEEcC--CCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHH
Q 008946 257 LLASGSTIVVLS--KFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQK 334 (548)
Q Consensus 257 ~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~ 334 (548)
++..|+++++.. .+++..+++.++++++|++.++|+++..+++... ...+++++|.+++||+++++++.+.+.+.
T Consensus 269 ~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~~~~~~~lr~i~~gGe~l~~~~~~~~~~~ 345 (570)
T 3c5e_A 269 PWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDL---SSYKFPHLQNCVTVGESLLPETLENWRAQ 345 (570)
T ss_dssp HHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCT---TTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccc---cccccccceEEEEcCCcCCHHHHHHHHHH
Confidence 999999999876 5899999999999999999999999999987632 34467899999999999999999999998
Q ss_pred CCCCeEEeeeccccccCcccccCCccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEe-----CCcccccccC
Q 008946 335 YPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLK-----GPSIMKGYFS 409 (548)
Q Consensus 335 ~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~-----~~~~~~~y~~ 409 (548)
+ ++++++.||+||++.+++... ......+++|.|.++++++|+| +++++++.|+.|||+|+ |++++.||++
T Consensus 346 ~-g~~i~~~YG~TE~~~~~~~~~--~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~ 421 (570)
T 3c5e_A 346 T-GLDIRESYGQTETGLTCMVSK--TMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVD 421 (570)
T ss_dssp H-SCCCEEEEEETTTEEEEECCT--TSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETT
T ss_pred h-CCchhhccchhhcccceecCc--ccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccC
Confidence 8 889999999999986655432 2234567899999999999999 45899999999999999 9999999999
Q ss_pred CCccCccccCCCCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeE
Q 008946 410 NPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMA 489 (548)
Q Consensus 410 ~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~ 489 (548)
+++.+.+.| .++||+|||+|++++||++++.||+||+||++|++|+|.+||++|.++|.|.+++|++.+++..++.+++
T Consensus 422 ~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a 500 (570)
T 3c5e_A 422 NPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKA 500 (570)
T ss_dssp CHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred ChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEE
Confidence 999998888 4799999999999999999999999999999999999999999999999999999999998888888999
Q ss_pred EEEecCCCC-C----CHHHHHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHh
Q 008946 490 YVVREAGSR-L----SENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATS 546 (548)
Q Consensus 490 ~v~~~~~~~-~----~~~~l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~ 546 (548)
+|+..++.. . ..++|+++++++|+.|++|+.|+++++||+|++||++|++|++++..
T Consensus 501 ~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 501 FVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp EEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred EEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHh
Confidence 998765421 1 24689999999999999999999999999999999999999998743
No 27
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4.9e-71 Score=628.58 Aligned_cols=491 Identities=21% Similarity=0.281 Sum_probs=410.6
Q ss_pred cccCCCCCCCCCCCCCCHHHHHhcc--CCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCc
Q 008946 20 FYSKRKPVSLPPNESLDVTTFISSR--AHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIF 97 (548)
Q Consensus 20 ~~~~~~~~~~p~~~~~~l~~~~~~~--~~~~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~ 97 (548)
..|+......|. .++++++.++ ..|+++|+++. ++++||+||.++++++|++|++.|+++|++|+|+++|+++
T Consensus 452 ~~~~~~~~~~~~---~~l~~~~~~~~~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~ 526 (1304)
T 2vsq_A 452 TGLNPPAQAHET---KPLTYWFKEAVNANPDAPALTYS--GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLE 526 (1304)
T ss_dssp TTTSCCCCCCCC---CCHHHHHHHHHHHCTTSEEEESS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHH
T ss_pred HhcCCCCCCCCC---CCHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHH
Confidence 345544333332 5799999887 46889999986 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccCC--CCcEEEecCCCCcccCCccccccccc
Q 008946 98 FPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGS--TLPIVLLDDEKTTSTEGIKTVTTLPQ 175 (548)
Q Consensus 98 ~~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (548)
+++++|||+++|++++|++|.++.+++.++++.+++++++++......+... ....+.+++... ..
T Consensus 527 ~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~- 594 (1304)
T 2vsq_A 527 LVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTR-----------FE- 594 (1304)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCGGG-----------GG-
T ss_pred HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccccc-----------cc-
Confidence 9999999999999999999999999999999999999999998765543221 111222221100 00
Q ss_pred cccCCCCCCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHH
Q 008946 176 MMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFAT 255 (548)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 255 (548)
... ........++++++|+|||||||.||||+++|+++.+. ......+ ....+++++...|+++..+. ..++
T Consensus 595 --~~~---~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~~~~~~fd~~~-~~~~ 666 (1304)
T 2vsq_A 595 --EQA---SDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLSVSNYAFDAFT-FDFY 666 (1304)
T ss_dssp --SCS---SCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEECSCTTSTHHH-HHHH
T ss_pred --ccc---CCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEEECCccHHHHH-HHHH
Confidence 000 11112346899999999999999999999999999865 3333333 34566788888888776555 6678
Q ss_pred HHHHcCCEEEEcCC---CCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHH
Q 008946 256 GLLASGSTIVVLSK---FDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFV 332 (548)
Q Consensus 256 ~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~ 332 (548)
.++..|+++++.+. .++..+++.+.++++|++.++|+++..+.+... ..++++|.+++|||++++++.+.+.
T Consensus 667 ~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~-----~~~~~lr~~~~gGe~l~~~~~~~~~ 741 (1304)
T 2vsq_A 667 ASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE-----DWMKGLRCILFGGERASVPHVRKAL 741 (1304)
T ss_dssp HHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS-----HHHHTCSEEEEESSCCCHHHHHHHH
T ss_pred HHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch-----hcCCCccEEEEecCCCCHHHHHHHH
Confidence 89999999999874 689999999999999999999999999876432 1257899999999999999999999
Q ss_pred HHCCCCeEEeeeccccccCcccccCCcc--ccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCC
Q 008946 333 QKYPKVRILQGYGLTESTGIGASTDSLE--ESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSN 410 (548)
Q Consensus 333 ~~~~~~~i~~~yG~tE~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~ 410 (548)
+.+++++++|.||+||++.+++...... ......++|.|+++++++|+| +.++++|.|+.|||+|+|+++++||+++
T Consensus 742 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~ 820 (1304)
T 2vsq_A 742 RIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNR 820 (1304)
T ss_dssp HHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTC
T ss_pred HhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCC
Confidence 9887789999999999987765532211 223346799999999999999 5589999999999999999999999999
Q ss_pred CccCccccC------CCCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCC
Q 008946 411 PEATTSTLD------SEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAG 484 (548)
Q Consensus 411 ~~~~~~~~~------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 484 (548)
++.|.++|. +++||+|||+|++++||.++++||+||+||++|++|+|.|||.+|.++|+|.+++|++.++...+
T Consensus 821 p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~ 900 (1304)
T 2vsq_A 821 ADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGD 900 (1304)
T ss_dssp HHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSC
T ss_pred cccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCC
Confidence 999988873 34699999999999999999999999999999999999999999999999999999999888888
Q ss_pred ceeeEEEEecCCCCCCHHHHHHHHHhccCCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 008946 485 QYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKL 543 (548)
Q Consensus 485 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~ 543 (548)
..++++++... ..+.++++++++++||.|++|..++++++||+|++|||+|++|.+.
T Consensus 901 ~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 901 ASINAYLVNRT--QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp CEEEEEEECSS--SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCC
T ss_pred EEEEEEEeCCC--CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCc
Confidence 88999988653 5678899999999999999999999999999999999999998653
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=7.1e-72 Score=585.54 Aligned_cols=493 Identities=18% Similarity=0.220 Sum_probs=307.1
Q ss_pred CCCCCHHHHHhcc--CCCCCcEEEeCCC--------CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHH
Q 008946 32 NESLDVTTFISSR--AHHGRTAFIDAAT--------GRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVV 101 (548)
Q Consensus 32 ~~~~~l~~~~~~~--~~~~~~a~~~~~~--------~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~ 101 (548)
....++.+++.++ ..|+++|+++... ++++||+||+++++++|++|.+.|+ +||+|+++++|+++++++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~ 95 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAI 95 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHH
Confidence 3446788888877 4689999986421 2789999999999999999999999 799999999999999999
Q ss_pred HHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccCCCCcEEEecCCCCcccCCccccccccccccCCC
Q 008946 102 CLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEP 181 (548)
Q Consensus 102 ~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (548)
+|||+++|++++|+++.++.+++.++++.++++++|++......+.......+.... .. ...........
T Consensus 96 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~ 165 (562)
T 3ite_A 96 IVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTK-NQ---------SFIENLSTQDT 165 (562)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETT-CH---------HHHHHHHHSCC
T ss_pred HHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeeccc-ch---------hhhhhcccccc
Confidence 999999999999999999999999999999999999987655433221111111110 00 00000000111
Q ss_pred CCCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhcc-------ccCCCCeEEEEccchHHHHhHHHHH
Q 008946 182 SGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRF-------KLEDGEQTFICTVPMFHIYGLAAFA 254 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~p~~~~~g~~~~~ 254 (548)
........++++++|+|||||||.||+|.++|+++.+........+ ......+++++..|++|..+. ..+
T Consensus 166 --~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 242 (562)
T 3ite_A 166 --SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI-GEM 242 (562)
T ss_dssp --SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHH-HHH
T ss_pred --cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhH-HHH
Confidence 1112234578899999999999999999999999988766544321 124556778888888776665 556
Q ss_pred HHHHHcCCEEEEcCCCC-HHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHH
Q 008946 255 TGLLASGSTIVVLSKFD-MHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQ 333 (548)
Q Consensus 255 ~~~l~~G~~~v~~~~~~-~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~ 333 (548)
+.++..|+++++...+. +..+++.++++++|++.++|+++..+.... .+++++|.+++||+++++++.+.+.+
T Consensus 243 ~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~------~~~~~lr~~~~gG~~l~~~~~~~~~~ 316 (562)
T 3ite_A 243 FLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP------EDAPHLVYLGVGGEKMTPRTQQIWSS 316 (562)
T ss_dssp HHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG------GGSTTCCEEEEESSCCCHHHHHHHTT
T ss_pred HHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc------cccCceEEEEEecCCCCHHHHHHHhh
Confidence 77899999999877543 577889999999999999999988774432 34789999999999999999999988
Q ss_pred HCCCCeEEeeeccccccCcccccCCccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCcc
Q 008946 334 KYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEA 413 (548)
Q Consensus 334 ~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~ 413 (548)
.+ ++++++.||+||++..+...... .....+++|.|+++++++++|++++++++.|+.|||+|+|+.++.|||++++.
T Consensus 317 ~~-~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~ 394 (562)
T 3ite_A 317 SD-RVALVNVYGPTEVTIGCSAGRIL-PDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDA 394 (562)
T ss_dssp CS-SCEEEEEECCGGGCSCSEEEECC-TTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTC
T ss_pred CC-CcEEEEeeccchheeeeeeeeec-CCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccc
Confidence 76 89999999999998766543222 23345789999999999999988899999999999999999999999999998
Q ss_pred Ccccc-CCCCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHHHHHhcC-CCcceeEEEeecCCCCCceeeEEE
Q 008946 414 TTSTL-DSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTH-PKISDAAVVPFPDKEAGQYPMAYV 491 (548)
Q Consensus 414 ~~~~~-~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v 491 (548)
+...+ ++++||+|||+|++++||++++.||+||+||++|++|+|.|||++|.++ +.+.+++|++.+++..++..++++
T Consensus 395 t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 474 (562)
T 3ite_A 395 KGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSF 474 (562)
T ss_dssp CSEEEETTEEEEEEEEEEEECTTSCEEEEEEC------------------------------------------------
T ss_pred cccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEE
Confidence 87654 2234999999999999999999999999999999999999999999998 778888888888877776655555
Q ss_pred EecCCCCCC-------------HHHHHHHHHhccCCCCceeEEEEeecCCCC-CCcccchHHHHHHHHh
Q 008946 492 VREAGSRLS-------------ENEVMDFVARQVAPYKRVRRVAFVASIPKN-PSGKILRKDLIKLATS 546 (548)
Q Consensus 492 ~~~~~~~~~-------------~~~l~~~l~~~l~~~~~p~~i~~~~~lP~t-~~GKv~R~~l~~~~~~ 546 (548)
+...+.... .++|+++++++|+.|++|+.|+++++||+| ++||++|++|++++.+
T Consensus 475 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~ 543 (562)
T 3ite_A 475 VASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHT 543 (562)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhc
Confidence 543332221 348999999999999999999999999998 8999999999998864
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=8.5e-72 Score=589.30 Aligned_cols=493 Identities=23% Similarity=0.331 Sum_probs=402.6
Q ss_pred CCCHHHHHhcc--CCCCCcEEEeC--CCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcC
Q 008946 34 SLDVTTFISSR--AHHGRTAFIDA--ATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLG 109 (548)
Q Consensus 34 ~~~l~~~~~~~--~~~~~~a~~~~--~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G 109 (548)
..++.+++.++ ..|+++|+++. ..++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus 10 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 89 (590)
T 3kxw_A 10 CQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAG 89 (590)
T ss_dssp CSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhC
Confidence 36899999887 46889998753 235899999999999999999999999999999999999999999999999999
Q ss_pred CeEecCCCCC---CHHHHHHHHhhcCCeEEEEcCcccccccCCC---C----cEEEecCCCCcccCCccccccccccccC
Q 008946 110 AIITTTNPLN---TKQEIAKQIADSKPVLAFTISQLVPKLAGST---L----PIVLLDDEKTTSTEGIKTVTTLPQMMRK 179 (548)
Q Consensus 110 ~~~v~l~~~~---~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (548)
++++|++|.. +.+++.++++.+++++++++.+....+.... . .+..+... .....
T Consensus 90 ~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~--- 154 (590)
T 3kxw_A 90 CIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALE------------SIELN--- 154 (590)
T ss_dssp CEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGG------------GCCGG---
T ss_pred cEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeech------------hcccc---
Confidence 9999999988 4578999999999999999877655443211 0 01111000 00000
Q ss_pred CCCCCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHHHHH
Q 008946 180 EPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLA 259 (548)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~ 259 (548)
...........++++++|+|||||||.||+|.++|+++.+........+ ....++++++.+|++|.+|+...++.++.
T Consensus 155 -~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~ 232 (590)
T 3kxw_A 155 -RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HMNDETIIFSWLPPHHDMGLIGCILTPIY 232 (590)
T ss_dssp -GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHTTTHHHHH
T ss_pred -ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CCCCcCeEEEecCCCcchhhHHHHHHHHh
Confidence 0001112345688999999999999999999999999999988877776 44667889999999999998666888999
Q ss_pred cCCEEEEcCCC----CHHHHHHHHhhccceEEecchHHHHHHHhCccc-ccccCCCCccceeeecCCCCCHHHHHHHHHH
Q 008946 260 SGSTIVVLSKF----DMHEMLSSISKYRATYLPLVPPILVALISGADQ-IRSKYDLSSLQSVLSGGAPLSREVIEGFVQK 334 (548)
Q Consensus 260 ~G~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~ 334 (548)
.|+++++.+++ ++..+++.++++++|++.++|+++..+++.... .....+++++|.+++||+++++++.+.+.+.
T Consensus 233 ~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~ 312 (590)
T 3kxw_A 233 GGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQA 312 (590)
T ss_dssp HTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred cCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHH
Confidence 99999998764 789999999999999999999999988875432 1244568999999999999999999999998
Q ss_pred CC-----CCeEEeeeccccccCcccccCCc-------------------------cccCCCCcccccCCCceEEEEcCCC
Q 008946 335 YP-----KVRILQGYGLTESTGIGASTDSL-------------------------EESRKYGTAGMLSPSMEAKIVDPDS 384 (548)
Q Consensus 335 ~~-----~~~i~~~yG~tE~~~~~~~~~~~-------------------------~~~~~~~~~g~~~~~~~~~i~~~~~ 384 (548)
|+ +.++++.||+||++++++..... .......++|.|.++ ++|+|+++
T Consensus 313 ~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~ 390 (590)
T 3kxw_A 313 FKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDT 390 (590)
T ss_dssp HGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTT
T ss_pred HHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCC
Confidence 73 45799999999998876643211 111223577899988 88899888
Q ss_pred CcccCCCCccEEEEeCCcccccccCCCccCccccCC------CC--eeecCceeEEcCCCcEEEEcccCceeeeCceeeC
Q 008946 385 GKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDS------EG--WLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVP 456 (548)
Q Consensus 385 ~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~------~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~ 456 (548)
+.+++.|++|||+|+|+.++.||+++++.+.+.|.. +| ||+|||+|+++ +|.+++.||+||+||++|++|+
T Consensus 391 ~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~ 469 (590)
T 3kxw_A 391 LIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHY 469 (590)
T ss_dssp CCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTH
T ss_pred CcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecC
Confidence 999999999999999999999999999999888743 24 99999999998 9999999999999999999999
Q ss_pred hHHHHHHH-hcCCCcc--eeEEEeecCCCCCceeeEEEEecCCC--CCCHHHHHHHHHhccCC-CCcee-EEEEe--ecC
Q 008946 457 PAELEALL-LTHPKIS--DAAVVPFPDKEAGQYPMAYVVREAGS--RLSENEVMDFVARQVAP-YKRVR-RVAFV--ASI 527 (548)
Q Consensus 457 ~~~iE~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~l~~~l~~-~~~p~-~i~~~--~~l 527 (548)
|.|||++| ..+|.|. +++|++++++. ++.++++++..++. ..+.+++.++++++++. +++|. .+.++ ++|
T Consensus 470 p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~l 548 (590)
T 3kxw_A 470 PQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAM 548 (590)
T ss_dssp HHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCS
T ss_pred HHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCcc
Confidence 99999999 7889998 78998887765 66777887776543 34567889999998875 67774 45555 799
Q ss_pred CCCCCcccchHHHHHHHHhc
Q 008946 528 PKNPSGKILRKDLIKLATSK 547 (548)
Q Consensus 528 P~t~~GKv~R~~l~~~~~~~ 547 (548)
|+|++|||+|++|++++.++
T Consensus 549 P~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 549 PHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp CCCSCHHHHHHHHHHHHHHT
T ss_pred CcCCCcHHHHHHHHHHHHcC
Confidence 99999999999999998764
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=7.8e-71 Score=580.74 Aligned_cols=496 Identities=20% Similarity=0.313 Sum_probs=401.0
Q ss_pred CCCCCCHHHHHhccCCCCC--cEEEeCC-CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHH
Q 008946 31 PNESLDVTTFISSRAHHGR--TAFIDAA-TGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMS 107 (548)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~--~a~~~~~-~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~ 107 (548)
.....++.+++..++...+ +++.+.. .++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||++
T Consensus 17 ~~~~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 96 (576)
T 3gqw_A 17 YADFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQY 96 (576)
T ss_dssp CSCCSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 3455789999998865433 3333221 247899999999999999999999999999999999999999999999999
Q ss_pred cCCeEecCCCCCC-------HHHHHHHHhhcCCeEEEEcCcccccccC---CCCcEEEecCCCCcccCCccccccccccc
Q 008946 108 LGAIITTTNPLNT-------KQEIAKQIADSKPVLAFTISQLVPKLAG---STLPIVLLDDEKTTSTEGIKTVTTLPQMM 177 (548)
Q Consensus 108 ~G~~~v~l~~~~~-------~~~~~~~l~~~~~~~vi~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (548)
+|++++|+++.++ .+++.++++.++++++|++.+..+.+.. .......+.. ....
T Consensus 97 ~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~--- 161 (576)
T 3gqw_A 97 AGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSH------------AWFK--- 161 (576)
T ss_dssp TTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEH------------HHHH---
T ss_pred hCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecch------------hhhh---
Confidence 9999999999998 8999999999999999999876554322 0000011100 0000
Q ss_pred cCCCCCCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHHH
Q 008946 178 RKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGL 257 (548)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~ 257 (548)
.............++++++|+|||||||.||+|.++|+++................++++++.+|++|.+|+...++.+
T Consensus 162 -~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~ 240 (576)
T 3gqw_A 162 -ALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTP 240 (576)
T ss_dssp -TSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHH
T ss_pred -cccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHH
Confidence 0000111122346789999999999999999999999999988777654422456777889999999999997778888
Q ss_pred HHcCCEEEEcCC----CCHHHHHHHHhhccceEEecchHHHHHHHhCcccc-cccCCCCccceeeecCCCCCHHHHHHHH
Q 008946 258 LASGSTIVVLSK----FDMHEMLSSISKYRATYLPLVPPILVALISGADQI-RSKYDLSSLQSVLSGGAPLSREVIEGFV 332 (548)
Q Consensus 258 l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~l~~lr~v~~~G~~l~~~~~~~~~ 332 (548)
+..|+++++... +++..+++.++++++|++.++|+++..+.+..... ....+++++|.+++||+++++++.+.+.
T Consensus 241 l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~ 320 (576)
T 3gqw_A 241 VATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFA 320 (576)
T ss_dssp HHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHH
T ss_pred HhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHH
Confidence 999999988764 57889999999999999999999998887765431 1345689999999999999999999999
Q ss_pred HHCC-----CCeEEeeeccccccCcccccCCcccc--------------------------CCCCcccccCCCceEEEEc
Q 008946 333 QKYP-----KVRILQGYGLTESTGIGASTDSLEES--------------------------RKYGTAGMLSPSMEAKIVD 381 (548)
Q Consensus 333 ~~~~-----~~~i~~~yG~tE~~~~~~~~~~~~~~--------------------------~~~~~~g~~~~~~~~~i~~ 381 (548)
+.++ ++++++.||+||++++++........ ....++|.|+|+++++|+|
T Consensus 321 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 400 (576)
T 3gqw_A 321 ECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN 400 (576)
T ss_dssp HHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC
T ss_pred HHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC
Confidence 9874 67899999999999877654321100 0112789999999999999
Q ss_pred CCCCcccCCCCccEEEEeCCcccccccCCCccCccccCCCCeeecCceeEEcCCCcEEEEcccCceeeeCceeeChHHHH
Q 008946 382 PDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELE 461 (548)
Q Consensus 382 ~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE 461 (548)
+++++++.|++|||+|+|+.++.||+++++.+...+ .+|||+|||+|++ +||.+++.||+||+||++|++|+|.+||
T Consensus 401 -~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE 477 (576)
T 3gqw_A 401 -EAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIE 477 (576)
T ss_dssp -TTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHH
T ss_pred -CCCCCCCCCCeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHH
Confidence 679999999999999999999999999988776544 6899999999999 7999999999999999999999999999
Q ss_pred HHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCCCHHHHHHHHHhcc-CCCCceeEEEEee--cCCCCCCcccchH
Q 008946 462 ALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQV-APYKRVRRVAFVA--SIPKNPSGKILRK 538 (548)
Q Consensus 462 ~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l-~~~~~p~~i~~~~--~lP~t~~GKv~R~ 538 (548)
++|.++|.|.+++|++..++.. ...+++..........+++.+++++++ +.++.|..+.+++ +||+|++||++|+
T Consensus 478 ~~l~~~p~V~~~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~ 555 (576)
T 3gqw_A 478 YIAEQEPEIHSGDAIAFVTAQE--KIILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARA 555 (576)
T ss_dssp HHHTTSSSCCTTSEEEEECTTS--CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHH
T ss_pred HHHHhCcccccccEEEEEcCCc--cEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHH
Confidence 9999999999998888876543 344444444444445578888999888 6789999888886 8999999999999
Q ss_pred HHHHHHHhc
Q 008946 539 DLIKLATSK 547 (548)
Q Consensus 539 ~l~~~~~~~ 547 (548)
+|++++.++
T Consensus 556 ~l~~~~~~~ 564 (576)
T 3gqw_A 556 EAKKRYQKA 564 (576)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.1e-57 Score=469.58 Aligned_cols=388 Identities=22% Similarity=0.333 Sum_probs=310.5
Q ss_pred CCCHHHHHhcc--CCCCCcEEEeCC-----CC--ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHH
Q 008946 34 SLDVTTFISSR--AHHGRTAFIDAA-----TG--RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLA 104 (548)
Q Consensus 34 ~~~l~~~~~~~--~~~~~~a~~~~~-----~~--~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA 104 (548)
..++.+++.++ ..|+++|+++.+ ++ +++||+||.++++++|++|++.|+ +||+|+++++|++++++++||
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA 101 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLG 101 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHH
Confidence 46799999887 468999998642 22 789999999999999999999996 999999999999999999999
Q ss_pred HHHcCCeEecCCC---CCCHHHHHHHHhhcCCeEEEEcCcccccccCCC--------CcEEEecCCCCcccCCccccccc
Q 008946 105 VMSLGAIITTTNP---LNTKQEIAKQIADSKPVLAFTISQLVPKLAGST--------LPIVLLDDEKTTSTEGIKTVTTL 173 (548)
Q Consensus 105 ~~~~G~~~v~l~~---~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 173 (548)
|+++|++++|+++ .++.+++.++++.++++++|++......+.... ..++.++...
T Consensus 102 ~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 168 (480)
T 3t5a_A 102 ALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------- 168 (480)
T ss_dssp HHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC-------------
T ss_pred HHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc-------------
Confidence 9999999999999 778999999999999999999987665443211 0111111100
Q ss_pred cccccCCCCCCccccCCCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCC-----CCeEEEEccchHHHH
Q 008946 174 PQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLED-----GEQTFICTVPMFHIY 248 (548)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~ 248 (548)
.............++++++|+|||||||.||||+++|+++.+........+.... .++++++.+|++|.+
T Consensus 169 -----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 243 (480)
T 3t5a_A 169 -----LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDM 243 (480)
T ss_dssp -----TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTT
T ss_pred -----cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCcc
Confidence 0000111223456789999999999999999999999999888877666553322 278999999999999
Q ss_pred hHHHHHHHHHHcCCEEEEcCCC----CHHHHHHHHhhccceEEecchHHHHHHHhCcc--cccccCCCCccceeeecCCC
Q 008946 249 GLAAFATGLLASGSTIVVLSKF----DMHEMLSSISKYRATYLPLVPPILVALISGAD--QIRSKYDLSSLQSVLSGGAP 322 (548)
Q Consensus 249 g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~~~~~l~~lr~v~~~G~~ 322 (548)
|+...++.++..|+++++.++. ++..+++.++++++| +..+|+++..++.... ......+++++|.+++||++
T Consensus 244 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~ 322 (480)
T 3t5a_A 244 GLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSER 322 (480)
T ss_dssp HHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTT
T ss_pred HHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCc
Confidence 9877888999999999998753 889999999999999 8899999888876421 11245668999999999999
Q ss_pred CCHHHHHHHHHHC-----CCCeEEeeeccccccCcccccCCccc-----------------------cCCCCcccccCCC
Q 008946 323 LSREVIEGFVQKY-----PKVRILQGYGLTESTGIGASTDSLEE-----------------------SRKYGTAGMLSPS 374 (548)
Q Consensus 323 l~~~~~~~~~~~~-----~~~~i~~~yG~tE~~~~~~~~~~~~~-----------------------~~~~~~~g~~~~~ 374 (548)
+++++.+.+.+.+ +++++++.||+||++++++....... .....++|.|++
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~- 401 (480)
T 3t5a_A 323 VQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS- 401 (480)
T ss_dssp CCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-
T ss_pred CCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-
Confidence 9999999999998 34689999999999877665432110 123357999999
Q ss_pred ceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccccC-----------CCCeeecCceeEEcCCCcEEEEcc
Q 008946 375 MEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLD-----------SEGWLRTGDLCYIDDDGFIFIVDR 443 (548)
Q Consensus 375 ~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~~g~~~~~GR 443 (548)
++++|+|++++++++.|++|||+|+|+.++.||+++++.+.+.|. .+|||+|||+|+++ ||+|++.||
T Consensus 402 ~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 402 PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 999999988889999999999999999999999999999988874 56799999999996 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=6.6e-53 Score=414.09 Aligned_cols=316 Identities=17% Similarity=0.234 Sum_probs=264.3
Q ss_pred CCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEcCCCC
Q 008946 192 QDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFD 271 (548)
Q Consensus 192 ~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~ 271 (548)
.+++++|+|||||||.||+|++||+++.+.+......+ ....++++++.+|++|.+|+ ..++.++..|+++++.++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc-
Confidence 47899999999999999999999999999888877776 34667788899999999998 4567788889998887642
Q ss_pred HHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEEeeeccccccC
Q 008946 272 MHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTG 351 (548)
Q Consensus 272 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~tE~~~ 351 (548)
...++.++++++|++.++|+++..+++.... ..+++++|.+++||+++++++.+++.+. ++++++.||+||+++
T Consensus 113 -~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~---~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~ 186 (358)
T 4gs5_A 113 -ANPLAGLDHADFDFVAMVPMQLQSILENSAT---SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVS 186 (358)
T ss_dssp -SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT---GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSS
T ss_pred -ccHHHHHHHhCCeEEEcChHHHHHhhccccc---cccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccc
Confidence 2346778999999999999999999887643 3458899999999999999999998874 789999999999987
Q ss_pred cccccCCccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccccCCCCeeecCceeE
Q 008946 352 IGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCY 431 (548)
Q Consensus 352 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~~TGD~~~ 431 (548)
.+.... ......+.+|.+.|++.+.+.+ .|||+++|+.. .+|||+|||+|+
T Consensus 187 ~~~~~~--~~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TGDlg~ 237 (358)
T 4gs5_A 187 HVALKA--LNGPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTNDLVE 237 (358)
T ss_dssp EEEEEE--CSSTTCCSCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEEEEEE
T ss_pred eeeccc--ccccccceeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecCCccc
Confidence 665532 2233457788899998877643 48999997642 678999999999
Q ss_pred EcCCCcEEEEcccCceeeeCceeeChHHHHHHH---hcCCCcceeEEE-eecCCCCCceeeEEEEecCCCCCCHHHHHHH
Q 008946 432 IDDDGFIFIVDRLKELIKYKGYQVPPAELEALL---LTHPKISDAAVV-PFPDKEAGQYPMAYVVREAGSRLSENEVMDF 507 (548)
Q Consensus 432 ~~~~g~~~~~GR~~d~i~~~G~~i~~~~iE~~l---~~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 507 (548)
+++|| ++++||+||+||++|++|+|.+||+.| .+||.|.+++|+ +.+++..|+.++++++... .....++|+++
T Consensus 238 ~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~-~~~~~~~l~~~ 315 (358)
T 4gs5_A 238 IHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAM-PEALTERLTAE 315 (358)
T ss_dssp ECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCC-CHHHHHHHHHH
T ss_pred cccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCC-CCcCHHHHHHH
Confidence 99888 677899999999999999999999877 457999998886 5667777888887776443 34556789999
Q ss_pred HHhccCCCCceeEEEEeecCCCCCCcccchHHHHHHHHhc
Q 008946 508 VARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSK 547 (548)
Q Consensus 508 l~~~l~~~~~p~~i~~~~~lP~t~~GKv~R~~l~~~~~~~ 547 (548)
++++|+.|++|+.|+++++||+|++|||+|++|++++++.
T Consensus 316 l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 316 IRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp HHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred HHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 9999999999999999999999999999999999998764
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1.9e-49 Score=402.19 Aligned_cols=331 Identities=19% Similarity=0.226 Sum_probs=271.3
Q ss_pred CCC-CCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhcc--ccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEE
Q 008946 190 INQ-DDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRF--KLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVV 266 (548)
Q Consensus 190 ~~~-~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 266 (548)
.++ +++++++|||||||.||+|.++|+++..........+ .....++++++..|+.|..+....++.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 345 8899999999999999999999999977665543222 2346677888888886666666677888999999999
Q ss_pred cCCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEEeeecc
Q 008946 267 LSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGL 346 (548)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~yG~ 346 (548)
.+..++..+++.++++++|++.++|+++..|++..........++++|.+++||+++++++.+.+.+.| ++++++.||+
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 240 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGM 240 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCcc
Confidence 888899999999999999999999999999998765422223478999999999999999999999999 8999999999
Q ss_pred ccccCcccccCCccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccccCCCCeeec
Q 008946 347 TESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRT 426 (548)
Q Consensus 347 tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~~T 426 (548)
||+++.+..... ......|.+.+++.++++|++++++++.|+.|||+|+|. +...+ +++||+|
T Consensus 241 TE~~~~~~~~~~----~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~~~~-~~~~y~T 303 (436)
T 3qov_A 241 TEMNGPGVAFEC----QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DREMM-PLIRYRT 303 (436)
T ss_dssp GGGTEEEEEEEC----TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SCCSS-CCCSEEE
T ss_pred hhhcCCeeEEec----CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------CcCCc-eEEEEEc
Confidence 999544222111 112346778889999999988999999999999999973 22233 6789999
Q ss_pred CceeEEcCCC------c---EEEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCC
Q 008946 427 GDLCYIDDDG------F---IFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGS 497 (548)
Q Consensus 427 GD~~~~~~~g------~---~~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 497 (548)
||+|+++++| . +++.||+||+||++|++|+|.+||++|.++|.|.+++|++..++..++.++++|+.. +.
T Consensus 304 GDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~ 382 (436)
T 3qov_A 304 RDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DL 382 (436)
T ss_dssp EEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TT
T ss_pred CCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Cc
Confidence 9999999998 5 699999999999999999999999999999999999999998877788899999987 54
Q ss_pred CCC----HHHHHHHHHhccCCC-CceeEEEEee--cCCCCCCcccchHHH
Q 008946 498 RLS----ENEVMDFVARQVAPY-KRVRRVAFVA--SIPKNPSGKILRKDL 540 (548)
Q Consensus 498 ~~~----~~~l~~~l~~~l~~~-~~p~~i~~~~--~lP~t~~GKv~R~~l 540 (548)
..+ .+++.++++++++.+ ++|..+.+++ +||+|+ ||++|...
T Consensus 383 ~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~~ 431 (436)
T 3qov_A 383 STDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVKD 431 (436)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEEE
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEEe
Confidence 444 578999999999988 8899999998 999999 99998643
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=5.4e-49 Score=399.74 Aligned_cols=332 Identities=17% Similarity=0.196 Sum_probs=271.7
Q ss_pred CCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhh---ccccCCCCeEEEEccch-HHHHhHHHHHHHHHHcCCEEE
Q 008946 190 INQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLG---RFKLEDGEQTFICTVPM-FHIYGLAAFATGLLASGSTIV 265 (548)
Q Consensus 190 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~v 265 (548)
..++++++++|||||||.||+|.++|+++......... .+ ....++++++..|+ +|..++ ...+.++..|++++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~ 166 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVV 166 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEE
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEE
Confidence 46788999999999999999999999998776544332 33 34667788888887 465555 56778899999999
Q ss_pred EcCCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEEeeec
Q 008946 266 VLSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYG 345 (548)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~yG 345 (548)
+.+..++..+++.++++++|++.++|+++..|++..........++++|.+++||+++++++.+.+.+.| ++++++.||
T Consensus 167 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 245 (443)
T 2y4o_A 167 PMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245 (443)
T ss_dssp CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEE
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccC
Confidence 9888899999999999999999999999999988654311111247899999999999999999999998 899999999
Q ss_pred ccccc-C-cccccCCccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccccCCCCe
Q 008946 346 LTEST-G-IGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGW 423 (548)
Q Consensus 346 ~tE~~-~-~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~ 423 (548)
+||++ . ++..+.. .....+.+.+++.++++|++++++++.|+.|||+|+|. +.+.+ +++|
T Consensus 246 ~TE~~g~~~~~~~~~-----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p~~~ 307 (443)
T 2y4o_A 246 LSEVMGPGVACECVE-----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-PVIR 307 (443)
T ss_dssp ETTTTEEEEEEECTT-----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCSS
T ss_pred chhhcCCeEEeccCC-----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-hhhe
Confidence 99974 3 3332211 11125667889999999988899999999999999963 22333 5789
Q ss_pred eecCceeEEcCC-CcE-----EEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecC--
Q 008946 424 LRTGDLCYIDDD-GFI-----FIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREA-- 495 (548)
Q Consensus 424 ~~TGD~~~~~~~-g~~-----~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-- 495 (548)
|+|||+|+++++ |++ ++.||.||+||++|++|+|.+||++|.++|.|.+++|++++++..++.++++++..+
T Consensus 308 y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~ 387 (443)
T 2y4o_A 308 YRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEA 387 (443)
T ss_dssp EEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHH
T ss_pred eecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcc
Confidence 999999999999 986 899999999999999999999999999999999999988877666778888888764
Q ss_pred C---CCCCHHHHHHHHHhccCCC-CceeEEEEe--ecCCCCCCcccchHHHHH
Q 008946 496 G---SRLSENEVMDFVARQVAPY-KRVRRVAFV--ASIPKNPSGKILRKDLIK 542 (548)
Q Consensus 496 ~---~~~~~~~l~~~l~~~l~~~-~~p~~i~~~--~~lP~t~~GKv~R~~l~~ 542 (548)
+ ...+.++++++++++|+.+ .+|..+.++ ++||+|++||++|+..++
T Consensus 388 ~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 388 AASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDRR 440 (443)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEECC
T ss_pred cccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEecc
Confidence 2 2244578999999999886 488878777 599999999999986554
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=2.5e-48 Score=394.22 Aligned_cols=329 Identities=17% Similarity=0.192 Sum_probs=270.5
Q ss_pred CCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhh---ccccCCCCeEEEEccch-HHHHhHHHHHHHHHHcCCEEE
Q 008946 190 INQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLG---RFKLEDGEQTFICTVPM-FHIYGLAAFATGLLASGSTIV 265 (548)
Q Consensus 190 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~v 265 (548)
..++++++++|||||||.||+|+++|+++......... .+ ....++++++..|+ +|..++ ...+.++..|++++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~ 164 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVI 164 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEE
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEcccccccccch-HHHHHHHHcCCEEE
Confidence 46688999999999999999999999998776544332 23 34567788888887 676665 45778899999999
Q ss_pred EcCCCCHHHHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCCCHHHHHHHHHHCCCCeEEeeec
Q 008946 266 VLSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYG 345 (548)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~yG 345 (548)
+.+..++..+++.++++++|++.++|+++..|++..........++++|.+++||+++++++.+.+.+.| ++++++.||
T Consensus 165 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 165 PFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred eCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 8888899999999999999999999999999988654311111247899999999999999999999988 899999999
Q ss_pred cccc-cC-cccccCCccccCCCCcccccCCCceEEEEcCCCCcccCCCCccEEEEeCCcccccccCCCccCccccCCCCe
Q 008946 346 LTES-TG-IGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGW 423 (548)
Q Consensus 346 ~tE~-~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~ 423 (548)
+||+ +. ++..+.. .....+.+.+++.++++|++++++++.|+.|||+|+|. +.+.+ +++|
T Consensus 244 ~TE~~g~~~~~~~~~-----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~~~ 305 (437)
T 2y27_A 244 LSEVMGPGVASECVE-----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PIIR 305 (437)
T ss_dssp ETTTTEEEEEECCTT-----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCCS
T ss_pred chhhcCCeeEEecCC-----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hhhe
Confidence 9997 43 3332211 11135667889999999988899999999999999973 22333 5789
Q ss_pred eecCceeEEcC-CCcE-----EEEcccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCC
Q 008946 424 LRTGDLCYIDD-DGFI-----FIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGS 497 (548)
Q Consensus 424 ~~TGD~~~~~~-~g~~-----~~~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 497 (548)
|+|||+|++++ +|++ ++.||+||+||++|++|+|.+||++|.++|.|.+++|++++++..++.++++|+..++.
T Consensus 306 y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~ 385 (437)
T 2y27_A 306 YRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPET 385 (437)
T ss_dssp EEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTT
T ss_pred eecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCc
Confidence 99999999999 6985 89999999999999999999999999999999999998887766678888888876553
Q ss_pred C---CCHHHHHHHHHhccCCC-CceeEEEEe--ecCCCCCCcccchHHH
Q 008946 498 R---LSENEVMDFVARQVAPY-KRVRRVAFV--ASIPKNPSGKILRKDL 540 (548)
Q Consensus 498 ~---~~~~~l~~~l~~~l~~~-~~p~~i~~~--~~lP~t~~GKv~R~~l 540 (548)
. .+.++++++++++++.+ .+|..+.++ ++||+|+ ||++|+..
T Consensus 386 ~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~~ 433 (437)
T 2y27_A 386 APDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVVD 433 (437)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEEE
T ss_pred cchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEEe
Confidence 3 34578999999999987 588888888 5999999 99999754
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=1e-30 Score=258.71 Aligned_cols=239 Identities=19% Similarity=0.206 Sum_probs=179.4
Q ss_pred CCCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhcc--ccCCCCeEEEEccch-HHHHhHHHHHHHHHHcCCEEEE
Q 008946 190 INQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRF--KLEDGEQTFICTVPM-FHIYGLAAFATGLLASGSTIVV 266 (548)
Q Consensus 190 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~v~ 266 (548)
..++++++++|||||||.||+|.++|+++..........+ .....++++++..|+ +|..|+. ..+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~-~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAI-NKERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHH-HHHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHH-HHHHHHHcCC-EEE
Confidence 4678999999999999999999999999998887543222 234667788999999 9988884 4455588898 666
Q ss_pred cCCCCHH-----------------------HHHHHHhhccceEEecchHHHHHHHhCcccccccCCCCccceeeecCCCC
Q 008946 267 LSKFDMH-----------------------EMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPL 323 (548)
Q Consensus 267 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~l~~lr~v~~~G~~l 323 (548)
...+++. .+++.++++++|++.++|+++..|++.... ....++++|.+++|||++
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~--~~~~~~~lr~i~~gGe~l 243 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV--VLQMKQSLAQITLGGTEL 243 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH--HHHHHHHCSEEEEESSCC
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh--hccccCCeeEEEECCccC
Confidence 6667777 888899999999999999999999887432 334568899999999999
Q ss_pred CHHHHHHHH-HHCCCCeEEeeeccccccCcccccCCccccCCCCccccc------CCCceEEEEcCCCCcccCCCCccEE
Q 008946 324 SREVIEGFV-QKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGML------SPSMEAKIVDPDSGKALLVNQTGEL 396 (548)
Q Consensus 324 ~~~~~~~~~-~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~i~~~~~~~~~~~g~~Gel 396 (548)
++++.+.+. +.||++++++.||+||+++++..+.. .+.|.+ .|+++++|+|++++++++.|+.|||
T Consensus 244 ~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl 316 (369)
T 3hgu_A 244 NLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNV 316 (369)
T ss_dssp CHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEE
T ss_pred CHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEE
Confidence 999999999 89989999999999999876644221 146777 9999999999878999999999999
Q ss_pred EEeCCcccccccCCCccCccccCCCCeeecCceeEEcCC--C-------cEEEEcccCceeeeCce
Q 008946 397 WLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDD--G-------FIFIVDRLKELIKYKGY 453 (548)
Q Consensus 397 ~v~~~~~~~~y~~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~~~~~GR~~d~i~~~G~ 453 (548)
+|++...... -.+|+|||++...+. | .+..++|.++..++.|.
T Consensus 317 ~vt~l~~~~~--------------l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 317 IVTHLSPWAF--------------YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEETTEE--------------EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEcCcccc--------------cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9996321111 124999999987553 2 25567777777777664
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.51 E-value=1.8e-14 Score=114.14 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=70.9
Q ss_pred cccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCC----CHHHHHHHHHhccCC-CC
Q 008946 442 DRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRL----SENEVMDFVARQVAP-YK 516 (548)
Q Consensus 442 GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~l~~~l~~-~~ 516 (548)
||.||+|+++|.+++|.+||++|.++|+|.++++++++++..++.++++++. ++... +.+++.+.+++.+.. +.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998888888777777888888887 54322 334555555554432 33
Q ss_pred ceeEEEEee--cCCCCCCcccchH
Q 008946 517 RVRRVAFVA--SIPKNPSGKILRK 538 (548)
Q Consensus 517 ~p~~i~~~~--~lP~t~~GKv~R~ 538 (548)
++..+.+++ +||+| +||++|.
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CceEEEEECCCCccCC-CCceEEE
Confidence 444677776 89999 9999985
No 38
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.50 E-value=3.5e-14 Score=112.69 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=72.3
Q ss_pred cccCceeeeCceeeChHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCCCH---HHHHHHHHhccCCC-Cc
Q 008946 442 DRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSE---NEVMDFVARQVAPY-KR 517 (548)
Q Consensus 442 GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~-~~ 517 (548)
.|.||+|+++|.||+|.+||++|.++|+|.++++++++++..++.+.++++..++...+. +++.+.+++.+..+ .+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999999999998888888889888876654443 34445555544332 23
Q ss_pred eeEEEEe--ecCCCCCCcccchH
Q 008946 518 VRRVAFV--ASIPKNPSGKILRK 538 (548)
Q Consensus 518 p~~i~~~--~~lP~t~~GKv~R~ 538 (548)
+..+.++ ++||+| +||++|.
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~Rv 102 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp CCEEEEECTTCSCCC----CCCE
T ss_pred ccceEEEcCCeecCC-CCCcchh
Confidence 4445666 589998 7999884
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=99.18 E-value=1.9e-10 Score=116.47 Aligned_cols=161 Identities=13% Similarity=0.173 Sum_probs=94.8
Q ss_pred CCc---cceeeecCCCCCHHHHHHHHHHCCCCeEE-eeeccccccCcccccCCccccCCCCcccccCCCceEEEEcCCCC
Q 008946 310 LSS---LQSVLSGGAPLSREVIEGFVQKYPKVRIL-QGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSG 385 (548)
Q Consensus 310 l~~---lr~v~~~G~~l~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~ 385 (548)
+++ +.+++.||-.. -...++..+++.+++ ..|++||+ .++....+...... ..+-.....+..+.++.+..
T Consensus 296 WPnl~~l~~~~~G~~~~---Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~~~~~-~~~~L~~~~~ffEFip~~~~ 370 (581)
T 4eql_A 296 WPNTKYIETVVTGSMGQ---YVPMLNYYCNDLPLVSTTYGSSET-TFGINLDPLCKPED-VSYTFMPNMSYFEFIPMDGG 370 (581)
T ss_dssp STTCCEEEEECSGGGGG---GHHHHHHHHTTCCEECCEEECSSC-EEEECSCTTSCGGG-CCEEECTTSSEEEEEECSTT
T ss_pred CCCCcEEEEEcCCChHH---HHHHHHHHcCCCccccCccccccc-eeeeccCCCCCccc-CceeecCCcEEEEEEecccc
Confidence 566 55666677322 223444555677777 89999995 33332111100000 11111122245566653221
Q ss_pred --------cccCCCCccEEEEeCCcccccccCCCccCccccCCCCeeecCceeEEcC----CCcEEEEcccCceeeeCce
Q 008946 386 --------KALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDD----DGFIFIVDRLKELIKYKGY 453 (548)
Q Consensus 386 --------~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~d~i~~~G~ 453 (548)
..+..|+.+||+++..+ |.|+ |++||++++.. ..++.+.||.++++.+.|+
T Consensus 371 ~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Ge 433 (581)
T 4eql_A 371 DKNDVVDLEDVKLGCTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSD 433 (581)
T ss_dssp CCSSCEEGGGCCTTCEEEEEEECSS---SCCS--------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSC
T ss_pred CCCcEeCHHHcCCCceEEEEEeecc---ceee--------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeee
Confidence 34668999999999542 3332 99999999875 3579999999999999999
Q ss_pred eeChHHHHHHHhcCC--------CcceeEEEeecCCCCCceeeEEEEe
Q 008946 454 QVPPAELEALLLTHP--------KISDAAVVPFPDKEAGQYPMAYVVR 493 (548)
Q Consensus 454 ~i~~~~iE~~l~~~~--------~v~~~~v~~~~~~~~~~~~~~~v~~ 493 (548)
+++..+||++|.+.- .|.++.++.... ......+.++..
T Consensus 434 kl~~~~v~~al~~a~~~l~~~g~~l~eft~~~~~~-~~p~Hy~~~wel 480 (581)
T 4eql_A 434 KTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTS-TFPGHYVVYLEV 480 (581)
T ss_dssp CEEHHHHHHHHHHC--------------CEEEECS-SSSBEEEEECC-
T ss_pred ECCHHHHHHHHHHHHHhhhhcCCEEEEEEEecCCC-CCCCeEEEEEEE
Confidence 999999999997542 356666654322 223344455544
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=99.08 E-value=4e-10 Score=114.26 Aligned_cols=162 Identities=12% Similarity=0.137 Sum_probs=98.4
Q ss_pred CCc---cceeeecCCCCCHHHHHHHHHHCCCCeEE-eeeccccccCcccccCCccccCCCCcccccCCCceEEEEcCCCC
Q 008946 310 LSS---LQSVLSGGAPLSREVIEGFVQKYPKVRIL-QGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSG 385 (548)
Q Consensus 310 l~~---lr~v~~~G~~l~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~ 385 (548)
+++ +.+++.||- .+ -...++..+++.+++ ..|++||+ .++....+...... ..+-.....+..+.++.++.
T Consensus 301 WPnlk~l~~~~tG~~--~~-Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~~p~~-~~~~L~p~~~ffEFIP~~~~ 375 (609)
T 4b2g_A 301 WPNTKYLDVIVTGAM--AQ-YIPTLDYYSGGLPLACTMYASSEC-YFGLNLNPMSKPSE-VSYTIMPNMAYFEFLPHEHS 375 (609)
T ss_dssp STTCCEEEEECSGGG--GG-GHHHHHHHHTSCCEECCEEECSSC-EEEECSCTTSCGGG-CCEEECTTSCEEEEEEGGGT
T ss_pred CCCCcEEEEEccCCh--HH-HHHHHHHHcCCCccccCcccccce-eeeeecCCCCCccc-CceeecCCcEEEEEEecccc
Confidence 566 445566663 22 223444445577777 89999996 34433211100000 11111222245556643321
Q ss_pred ---------------cccCCCCccEEEEeCCcccccccCCCccCccccCCCCeeecCceeEEcC----CCcEEEEcccCc
Q 008946 386 ---------------KALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDD----DGFIFIVDRLKE 446 (548)
Q Consensus 386 ---------------~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~d 446 (548)
..++.|+.+||+++..+ |+|+ |++||++++.. ..++.+.||.++
T Consensus 376 ~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~ 438 (609)
T 4b2g_A 376 SIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLYR--------------YRVGDILRVTGFHNSAPQFHFVRRKNV 438 (609)
T ss_dssp TSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCCS--------------EEEEEEEEEEEEETTEEEEEEEEETTC
T ss_pred ccccccCCCCccccHhHcCCCCeEEEehhhhh---hhhh--------------eecCCEEEEeecCCCCcEEEEEEecCC
Confidence 34778999999998542 4443 99999999874 467999999999
Q ss_pred eeeeCceeeChHHHHHHHhcC------C--CcceeEEEeecCCCCCceeeEEEEec
Q 008946 447 LIKYKGYQVPPAELEALLLTH------P--KISDAAVVPFPDKEAGQYPMAYVVRE 494 (548)
Q Consensus 447 ~i~~~G~~i~~~~iE~~l~~~------~--~v~~~~v~~~~~~~~~~~~~~~v~~~ 494 (548)
++.+.|+++++.+||+++.+. . .|.++.++.... ......+.++...
T Consensus 439 ~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~-~~p~Hyv~~wEl~ 493 (609)
T 4b2g_A 439 LLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTK-TIPGHYVIYWELL 493 (609)
T ss_dssp CBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECS-SSSCEEEEEEEEE
T ss_pred eEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCC-CCCCcEEEEEEEe
Confidence 999999999999999998731 2 356777754332 2233445555543
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=99.04 E-value=1.6e-09 Score=109.47 Aligned_cols=160 Identities=10% Similarity=0.097 Sum_probs=97.4
Q ss_pred CCccc---eeeecCCCCCHHHHHHHHHHCCCCeEE-eeeccccccCcccccCCccccCCCCcccc-cCC-CceEEEEcCC
Q 008946 310 LSSLQ---SVLSGGAPLSREVIEGFVQKYPKVRIL-QGYGLTESTGIGASTDSLEESRKYGTAGM-LSP-SMEAKIVDPD 383 (548)
Q Consensus 310 l~~lr---~v~~~G~~l~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~g~-~~~-~~~~~i~~~~ 383 (548)
+++++ .++.|+ +.+ -...++..+++.+++ ..|++||+ .++....+ ...++..+. .+| ....+.++.+
T Consensus 301 WPnl~~i~~~~~G~--~~~-Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p---~~~~~~~~~~L~p~~~ffEFiP~~ 373 (581)
T 4epl_A 301 FPNAKYVYGIMTGS--MEP-YVPKLRHYAGDLPLVSHDYGSSEG-WIAANVTP---RLSPEEATFAVIPNLGYFEFLPVS 373 (581)
T ss_dssp CTTCCCEEEECSGG--GGG-GHHHHHHHHTTSCEEECCEEETTE-EEEECCCT---TSCTTTCCEEECTTSCEEEEEEC-
T ss_pred CCCCceEEEEeCCC--hHH-HHHHHHHHcCCCccccCceeccce-eeeeecCC---CCCccccceeecCCcEEEEEEecc
Confidence 57775 334443 222 224444555677777 88999996 34433211 111111111 222 2444555322
Q ss_pred CC----------cccCCCCccEEEEeCCcccccccCCCccCccccCCCCeeecCceeEEcCC----CcEEEEcccCceee
Q 008946 384 SG----------KALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDD----GFIFIVDRLKELIK 449 (548)
Q Consensus 384 ~~----------~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~~TGD~~~~~~~----g~~~~~GR~~d~i~ 449 (548)
.. ..++.|+.+||+++..+ |.|+ |++||++++..- .++.+.||.++++.
T Consensus 374 ~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~ 436 (581)
T 4epl_A 374 ETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNNTPQLKFICRRNLILS 436 (581)
T ss_dssp ------CCCEEGGGCCTTCEEEEEEESTT---SCSS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred cccCCCCceeeHHHcCCCCeEEEEEeecc---ceee--------------EEcCCEEEEecccCCCcEEEEEeecCCeEE
Confidence 11 35778999999999542 3332 999999998642 57999999999999
Q ss_pred eCceeeChHHHHHHHhcC--------CCcceeEEEeecCCCCCceeeEEEEec
Q 008946 450 YKGYQVPPAELEALLLTH--------PKISDAAVVPFPDKEAGQYPMAYVVRE 494 (548)
Q Consensus 450 ~~G~~i~~~~iE~~l~~~--------~~v~~~~v~~~~~~~~~~~~~~~v~~~ 494 (548)
+.|++++..+||+++.+. -.|.++.+++... ......+.++...
T Consensus 437 ~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~-~~p~hyv~~wE~~ 488 (581)
T 4epl_A 437 INIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVS-TDPGHYAIFWEIS 488 (581)
T ss_dssp SSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECS-SSSCEEEEEEEES
T ss_pred eeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCC-CCCCcEEEEEeec
Confidence 999999999999998741 3477887776332 2233455555553
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=90.38 E-value=1 Score=44.39 Aligned_cols=86 Identities=10% Similarity=0.098 Sum_probs=69.5
Q ss_pred eeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC--cHHHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEEE
Q 008946 60 HLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSI--FFPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAF 137 (548)
Q Consensus 60 ~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~--~~~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi 137 (548)
.+|...+...+..+++.+...|+.++|++...++-+. ..+...++++..|+..++++. .+.+.+...++..++.+++
T Consensus 109 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~ 187 (437)
T 2y27_A 109 GYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDIIM 187 (437)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEEE
Confidence 5899999988888888887889999999999888643 334557888999999887755 4788999999999999998
Q ss_pred EcCcccccc
Q 008946 138 TISQLVPKL 146 (548)
Q Consensus 138 ~~~~~~~~~ 146 (548)
........+
T Consensus 188 ~~Ps~~~~l 196 (437)
T 2y27_A 188 VTPSYMLSI 196 (437)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 877665443
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=89.81 E-value=1.2 Score=44.06 Aligned_cols=86 Identities=12% Similarity=0.111 Sum_probs=69.6
Q ss_pred eeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC--cHHHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEEE
Q 008946 60 HLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSI--FFPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAF 137 (548)
Q Consensus 60 ~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~--~~~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi 137 (548)
.+|...+...+..+++.+...|+.++|++...++-+. ..+...++++..|+..++++. .+.+.+...++..++.+++
T Consensus 111 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~ 189 (443)
T 2y4o_A 111 GYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKIIL 189 (443)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEEE
Confidence 5899999988888888887889999999999888643 334567888899999888765 4888899999999999998
Q ss_pred EcCcccccc
Q 008946 138 TISQLVPKL 146 (548)
Q Consensus 138 ~~~~~~~~~ 146 (548)
........+
T Consensus 190 ~~Ps~~~~l 198 (443)
T 2y4o_A 190 VTPSYMLNL 198 (443)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 877655443
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=89.10 E-value=1.3 Score=43.66 Aligned_cols=86 Identities=21% Similarity=0.141 Sum_probs=69.9
Q ss_pred eeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC--CcHHHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEEE
Q 008946 60 HLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNS--IFFPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAF 137 (548)
Q Consensus 60 ~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~--~~~~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi 137 (548)
.+|...+...+..+++.+...++.++|++....+-+ ...+..+++++..|+..++.++ .+.+.+...++..++.+++
T Consensus 105 ~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~ 183 (436)
T 3qov_A 105 VHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTALH 183 (436)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEEE
T ss_pred EECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEEE
Confidence 589999999888888888888999999999998754 3344567888999999888754 4778899999999999998
Q ss_pred EcCcccccc
Q 008946 138 TISQLVPKL 146 (548)
Q Consensus 138 ~~~~~~~~~ 146 (548)
........+
T Consensus 184 ~~P~~~~~l 192 (436)
T 3qov_A 184 AIPSYAIRL 192 (436)
T ss_dssp CCHHHHHHH
T ss_pred ECHHHHHHH
Confidence 877655444
No 45
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=71.69 E-value=6.1 Score=37.66 Aligned_cols=85 Identities=8% Similarity=0.010 Sum_probs=62.4
Q ss_pred eeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCc--HHHHHHHHHHcCCeEecCCCCCCHH---------------
Q 008946 60 HLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIF--FPVVCLAVMSLGAIITTTNPLNTKQ--------------- 122 (548)
Q Consensus 60 ~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~--~~v~~lA~~~~G~~~v~l~~~~~~~--------------- 122 (548)
.+|...+...+..+++.+...|+.++|++..+++-+.. -+...++++..|+.+++.. .++.
T Consensus 110 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~~ 187 (369)
T 3hgu_A 110 VAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATVR 187 (369)
T ss_dssp EECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHHH
T ss_pred EECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhhH
Confidence 57999998888877777777899999999999887332 3344555688899666543 3444
Q ss_pred --------HHHHHHhhcCCeEEEEcCcccccc
Q 008946 123 --------EIAKQIADSKPVLAFTISQLVPKL 146 (548)
Q Consensus 123 --------~~~~~l~~~~~~~vi~~~~~~~~~ 146 (548)
.+...++..++.++++.......+
T Consensus 188 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 188 KYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 666688889999988877766554
No 46
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=69.70 E-value=22 Score=35.30 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=64.3
Q ss_pred ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC-cHHHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEEE
Q 008946 59 RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSI-FFPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAF 137 (548)
Q Consensus 59 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~-~~~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi 137 (548)
-.+|++.+...+...... .++.++|++...+|-.- ..+..+++++..|+..+..+ ..+.+.+...++..++.++.
T Consensus 181 v~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 256 (501)
T 3ipl_A 181 VPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHIS 256 (501)
T ss_dssp EEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEEE
T ss_pred EEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEEE
Confidence 358999988777665443 47899999999888653 23344678888999888765 57899999999999999998
Q ss_pred EcCcccccc
Q 008946 138 TISQLVPKL 146 (548)
Q Consensus 138 ~~~~~~~~~ 146 (548)
........+
T Consensus 257 ~~P~~~~~l 265 (501)
T 3ipl_A 257 LVPQTLNWL 265 (501)
T ss_dssp ECHHHHHHH
T ss_pred chHHHHHHH
Confidence 887666544
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=67.08 E-value=14 Score=37.37 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=63.5
Q ss_pred ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcH--HHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEE
Q 008946 59 RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFF--PVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLA 136 (548)
Q Consensus 59 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~--~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v 136 (548)
-.+|++.+...+......+...++.++|++...+|-.-.+ ...+++.+ .|+..+.++ ..+.+.+...+++.++.++
T Consensus 210 v~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~ 287 (548)
T 2d1s_A 210 VQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSV 287 (548)
T ss_dssp EEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEE
T ss_pred EEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEE
Confidence 3589999887766555443335788999998888765433 23356777 999888775 5788999999999999999
Q ss_pred EEcCcccccc
Q 008946 137 FTISQLVPKL 146 (548)
Q Consensus 137 i~~~~~~~~~ 146 (548)
+........+
T Consensus 288 ~~~P~~~~~l 297 (548)
T 2d1s_A 288 ILVPTLFAIL 297 (548)
T ss_dssp EECHHHHHHH
T ss_pred EecHHHHHHH
Confidence 8887766544
No 48
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=63.89 E-value=43 Score=33.65 Aligned_cols=84 Identities=13% Similarity=0.117 Sum_probs=63.5
Q ss_pred ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHH---HHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeE
Q 008946 59 RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPV---VCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVL 135 (548)
Q Consensus 59 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v---~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 135 (548)
-.+|++.+...+...... .++.++|++...+|-...+-. .+++.+..|+..+..+ ..+.+.+...+++.++.+
T Consensus 200 V~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 275 (539)
T 1mdb_A 200 IPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTI 275 (539)
T ss_dssp EEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSE
T ss_pred EEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCeE
Confidence 358999988777655544 377899999988886643322 4788899999988764 578899999999999999
Q ss_pred EEEcCcccccc
Q 008946 136 AFTISQLVPKL 146 (548)
Q Consensus 136 vi~~~~~~~~~ 146 (548)
+.........+
T Consensus 276 ~~~~P~~~~~l 286 (539)
T 1mdb_A 276 TALVPPLAMVW 286 (539)
T ss_dssp EEECHHHHHHH
T ss_pred EEccHHHHHHH
Confidence 88876655443
No 49
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=62.06 E-value=42 Score=33.75 Aligned_cols=83 Identities=14% Similarity=0.096 Sum_probs=63.6
Q ss_pred ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHH---HHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeE
Q 008946 59 RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPV---VCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVL 135 (548)
Q Consensus 59 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v---~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 135 (548)
-.+|++.+...+...+.. .++.++|++...+|-...+-. .+++.+..|+..+..+ ......+...++..++.+
T Consensus 209 v~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 284 (544)
T 3o83_A 209 IPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP-NPEPLNCFSIIQRHQVNM 284 (544)
T ss_dssp EEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCE
T ss_pred EEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC-CCCHHHHHHHHHHHCCCE
Confidence 358999998877665544 478999999999886654433 4788888999887764 568888889999999999
Q ss_pred EEEcCccccc
Q 008946 136 AFTISQLVPK 145 (548)
Q Consensus 136 vi~~~~~~~~ 145 (548)
+.........
T Consensus 285 ~~~~P~~~~~ 294 (544)
T 3o83_A 285 ASLVPSAVIM 294 (544)
T ss_dssp EEECHHHHHH
T ss_pred EEechHHHHH
Confidence 8887765543
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=57.15 E-value=48 Score=33.06 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=61.6
Q ss_pred ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHH--HHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEE
Q 008946 59 RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPV--VCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLA 136 (548)
Q Consensus 59 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v--~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v 136 (548)
-.+|.+.+...+...+.. .++.++|++...+|-...+-. .+++++ .|+..+.+ +..+...+...++..++.++
T Consensus 188 V~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-~~~~~~~~~~~i~~~~~t~~ 262 (517)
T 3r44_A 188 VVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-PQFDATKVWSLIVEERVCIG 262 (517)
T ss_dssp EEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-SSCCHHHHHHHHHHTTCCEE
T ss_pred eeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-CCCCHHHHHHHHHHhCCeEE
Confidence 358999998777665544 478999999998886643322 245555 88887776 56789999999999999998
Q ss_pred EEcCcccccc
Q 008946 137 FTISQLVPKL 146 (548)
Q Consensus 137 i~~~~~~~~~ 146 (548)
.........+
T Consensus 263 ~~~P~~~~~l 272 (517)
T 3r44_A 263 GAVPAILNFM 272 (517)
T ss_dssp EECHHHHHHH
T ss_pred EeHHHHHHHH
Confidence 8877665544
No 51
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=56.60 E-value=29 Score=34.60 Aligned_cols=85 Identities=11% Similarity=0.105 Sum_probs=64.5
Q ss_pred ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC-cHHHHHHHHHHcCCeEecCCCC--CCHHHHHHHHhhcCCeE
Q 008946 59 RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSI-FFPVVCLAVMSLGAIITTTNPL--NTKQEIAKQIADSKPVL 135 (548)
Q Consensus 59 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~-~~~v~~lA~~~~G~~~v~l~~~--~~~~~~~~~l~~~~~~~ 135 (548)
-.+|+..+...+...... .++.++|++...+|-+. ..+..+++.+..|+..+.+++. .++..+...++..++.+
T Consensus 162 v~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 238 (512)
T 3fce_A 162 VQITYNCLVSFTKWAVED---FNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQV 238 (512)
T ss_dssp EEEEHHHHHHHHHHHHHH---TTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCE
T ss_pred EEEehHHHHHHHHHHHHh---cCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcE
Confidence 358999888776554443 57899999999988664 3345678889999998887653 57788899999999999
Q ss_pred EEEcCcccccc
Q 008946 136 AFTISQLVPKL 146 (548)
Q Consensus 136 vi~~~~~~~~~ 146 (548)
+.........+
T Consensus 239 ~~~~P~~~~~l 249 (512)
T 3fce_A 239 WTSTPSFAEMC 249 (512)
T ss_dssp EEECHHHHHHH
T ss_pred EEecHHHHHHH
Confidence 88877665443
No 52
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=55.78 E-value=74 Score=31.53 Aligned_cols=94 Identities=11% Similarity=0.130 Sum_probs=64.6
Q ss_pred CCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhcc---ccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEc
Q 008946 191 NQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRF---KLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVL 267 (548)
Q Consensus 191 ~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 267 (548)
.++.+|++.- +-.+|.+.+......+...+ +..+++ ++...++-.. .+...+++.+..|+..+.+
T Consensus 19 ~pd~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd-~V~i~~~~~~--~~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 19 FPDRTAFMVD---------GVRLTHRDYLARAERLASGLLRDGVHTGD-RVAILSQNCS--EMIELIGAVALIGAILLPV 86 (509)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTC-EEEEECCSCH--HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEC---------CcEEcHHHHHHHHHHHHHHHHHcCCCCCC-EEEEEcCCCH--HHHHHHHHHHHhCCEEEec
Confidence 4667776641 13578888877666665544 333444 4444455443 2346777889999999988
Q ss_pred CC-CCHHHHHHHHhhccceEEecchHHHHH
Q 008946 268 SK-FDMHEMLSSISKYRATYLPLVPPILVA 296 (548)
Q Consensus 268 ~~-~~~~~~~~~i~~~~~t~l~~~P~~~~~ 296 (548)
++ ...+++...+++.++..++..+.....
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 74 678889999999999999888765554
No 53
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=50.30 E-value=26 Score=35.41 Aligned_cols=87 Identities=13% Similarity=-0.001 Sum_probs=64.6
Q ss_pred ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCc-HHHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEEE
Q 008946 59 RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIF-FPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAF 137 (548)
Q Consensus 59 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~-~~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi 137 (548)
-.+|++.+...+......+...++.+++++...+|-... .+...++.+..|+..+.+ +..+.+.+...++..++.+++
T Consensus 208 V~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~ 286 (550)
T 3rix_A 208 VALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLM-YRFEEELFLRSLQDYKIQSAL 286 (550)
T ss_dssp EEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC-SSCCHHHHHHHHHHTTCSEEE
T ss_pred hhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEe-CCCCHHHHHHHHHHcCCeEEE
Confidence 358999887766554444433578899999988886532 344567788899988876 457889999999999999998
Q ss_pred EcCcccccc
Q 008946 138 TISQLVPKL 146 (548)
Q Consensus 138 ~~~~~~~~~ 146 (548)
........+
T Consensus 287 ~~P~~~~~l 295 (550)
T 3rix_A 287 LVPTLFSFF 295 (550)
T ss_dssp ECHHHHHHH
T ss_pred eCcHHHHHH
Confidence 877665544
No 54
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=48.27 E-value=1.2e+02 Score=31.07 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=62.4
Q ss_pred ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHH---HHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeE
Q 008946 59 RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPV---VCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVL 135 (548)
Q Consensus 59 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v---~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 135 (548)
-.+|.+.+...+......+ ++.+++++...++-...+-. .+++.+..|+..+..+ ..+...+...++..++.+
T Consensus 202 V~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 277 (617)
T 3rg2_A 202 IPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA-DPSATLCFPLIEKHQVNV 277 (617)
T ss_dssp EEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCCE
T ss_pred eehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhCCcE
Confidence 3589999887776655544 67899999999886544433 4788888898887764 467888888999999998
Q ss_pred EEEcCccccc
Q 008946 136 AFTISQLVPK 145 (548)
Q Consensus 136 vi~~~~~~~~ 145 (548)
+.........
T Consensus 278 ~~~~P~~~~~ 287 (617)
T 3rg2_A 278 TALVPPAVSL 287 (617)
T ss_dssp EEECHHHHHH
T ss_pred EEcchHHHHH
Confidence 8887665443
No 55
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=48.23 E-value=92 Score=31.10 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=63.5
Q ss_pred CCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhcc---ccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEc
Q 008946 191 NQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRF---KLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVL 267 (548)
Q Consensus 191 ~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 267 (548)
.++.++++....| -.+|.+.+......+...+ +..++ +++...++-.. .+...+++++..|+..+..
T Consensus 35 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~g-d~V~i~~~~~~--~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLINGANG-------DVYTYADVELTARRVASGLNKIGIQQG-DVIMLFLPSSP--EFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTT-CEEEEECCSSH--HHHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCC-CEEEEEcCCcH--HHHHHHHHHHHhCCEEecc
Confidence 4677777653322 2478888876666555444 33344 45444455443 2346777889999999988
Q ss_pred CC-CCHHHHHHHHhhccceEEecchHHHH
Q 008946 268 SK-FDMHEMLSSISKYRATYLPLVPPILV 295 (548)
Q Consensus 268 ~~-~~~~~~~~~i~~~~~t~l~~~P~~~~ 295 (548)
++ ...+++...++..++..++.......
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~ 133 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYE 133 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHH
Confidence 74 67888999999999999888765443
No 56
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=48.18 E-value=32 Score=34.25 Aligned_cols=85 Identities=12% Similarity=0.099 Sum_probs=64.0
Q ss_pred ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCc-HHHHHHHHHHcCCeEecCCCC--CCHHHHHHHHhhcCCeE
Q 008946 59 RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIF-FPVVCLAVMSLGAIITTTNPL--NTKQEIAKQIADSKPVL 135 (548)
Q Consensus 59 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~-~~v~~lA~~~~G~~~v~l~~~--~~~~~~~~~l~~~~~~~ 135 (548)
-.+|.+.+...+..++.. .++.++|++...+|-+.. .+..+++++..|+..+.++.. .++..+...++..++.+
T Consensus 161 V~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 237 (511)
T 3e7w_A 161 VQISAANLQSFTDWICAD---FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV 237 (511)
T ss_dssp EEEEHHHHHHHHHHHHHH---STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE
T ss_pred EEEcHHHHHHHHHHHHHh---cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE
Confidence 358999988776655443 578899999999886643 345578889999998876543 46788889999999999
Q ss_pred EEEcCcccccc
Q 008946 136 AFTISQLVPKL 146 (548)
Q Consensus 136 vi~~~~~~~~~ 146 (548)
++........+
T Consensus 238 ~~~~P~~~~~l 248 (511)
T 3e7w_A 238 WTSTPSFVQMC 248 (511)
T ss_dssp EEECHHHHHHH
T ss_pred EEecHHHHHHH
Confidence 88877665543
No 57
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=45.92 E-value=1.1e+02 Score=30.71 Aligned_cols=99 Identities=8% Similarity=0.038 Sum_probs=64.2
Q ss_pred CCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhcc---ccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEc
Q 008946 191 NQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRF---KLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVL 267 (548)
Q Consensus 191 ~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 267 (548)
.++.++++....+ . .-.+|.+.+......+...+ +..+++ ++...++-.. .+...+++++..|+..+..
T Consensus 31 ~p~~~a~~~~~~~-~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd-~V~i~~~n~~--e~~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 31 FGRKEVVSRLHTG-E----VHRTTYAEVYQRARRLMGGLRALGVGVGD-RVATLGFNHF--RHLEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp STTCEEEEECTTS-C----EEEEEHHHHHHHHHHHHHHHHHTTCCTTC-EEEEECCSSH--HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEecCC-C----CceecHHHHHHHHHHHHHHHHHcCCCCCC-EEEEEcCCcH--HHHHHHHHHHhcCcEEEec
Confidence 4566666543211 1 12578888776665555443 333444 4444455433 2336677889999999988
Q ss_pred CC-CCHHHHHHHHhhccceEEecchHHHHHH
Q 008946 268 SK-FDMHEMLSSISKYRATYLPLVPPILVAL 297 (548)
Q Consensus 268 ~~-~~~~~~~~~i~~~~~t~l~~~P~~~~~l 297 (548)
++ ...+++...++..++..++..+.....+
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 74 6788999999999999999887655443
No 58
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=45.89 E-value=49 Score=33.59 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=61.6
Q ss_pred ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHH--HHHHHHHHcCCeEecCCCCC---CHHHHHHHHhhcCC
Q 008946 59 RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFP--VVCLAVMSLGAIITTTNPLN---TKQEIAKQIADSKP 133 (548)
Q Consensus 59 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~--v~~lA~~~~G~~~v~l~~~~---~~~~~~~~l~~~~~ 133 (548)
-.+|++.+...+...+.. .++.++|++...+|-...+- ..+++.+..|+..+.+.+.. ++..+...++..++
T Consensus 185 V~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~ 261 (590)
T 3kxw_A 185 VMVSHHNLLDNLNKIFTS---FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKA 261 (590)
T ss_dssp EEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTC
T ss_pred EEeeHHHHHHHHHHHHHh---hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCC
Confidence 358999998887665543 57899999999988765433 33788889999988876532 56778888899999
Q ss_pred eEEEEcCcccc
Q 008946 134 VLAFTISQLVP 144 (548)
Q Consensus 134 ~~vi~~~~~~~ 144 (548)
.++........
T Consensus 262 t~~~~~p~~~~ 272 (590)
T 3kxw_A 262 TISGSPNFAYD 272 (590)
T ss_dssp SEEEECTHHHH
T ss_pred eeecCChhHHH
Confidence 88877655443
No 59
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=44.75 E-value=1.4e+02 Score=29.87 Aligned_cols=102 Identities=11% Similarity=0.073 Sum_probs=66.0
Q ss_pred CCCCEEEEEcCCCC-CCcchhHhhhHHHHHHHHHHHhhcc---ccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEE
Q 008946 191 NQDDVATLLYSSGT-TGASKGVVSSHRNLIAMVQTVLGRF---KLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVV 266 (548)
Q Consensus 191 ~~~~~~~i~~TSGt-TG~pK~v~~t~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 266 (548)
.++.+|++....+. .+. .-.+|.+.+......+...+ +..+++ ++...++-.. .+...+++.+..|+..+.
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd-~V~i~~~~~~--~~~~~~lA~~~~G~~~vp 106 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGE-HVGVCIPNSI--DYVMTIYALWRVAATPVP 106 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTC-EEEEECCSSH--HHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCC-EEEEECCCCH--HHHHHHHHHHHhCCEEEc
Confidence 45777777653211 111 13578888776666655444 334444 4444455433 234667788999999998
Q ss_pred cCC-CCHHHHHHHHhhccceEEecchHHHHHH
Q 008946 267 LSK-FDMHEMLSSISKYRATYLPLVPPILVAL 297 (548)
Q Consensus 267 ~~~-~~~~~~~~~i~~~~~t~l~~~P~~~~~l 297 (548)
+++ ...+++...+++.+++.++..+.....+
T Consensus 107 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 107 INPMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp CCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 874 6788899999999999988877655443
No 60
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=43.42 E-value=90 Score=31.52 Aligned_cols=85 Identities=11% Similarity=0.024 Sum_probs=60.3
Q ss_pred eeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHH--HHHHHHHHcCCeEecCCC-CCCHHHHHHHHhhcCCeEE
Q 008946 60 HLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFP--VVCLAVMSLGAIITTTNP-LNTKQEIAKQIADSKPVLA 136 (548)
Q Consensus 60 ~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~--v~~lA~~~~G~~~v~l~~-~~~~~~~~~~l~~~~~~~v 136 (548)
.+|+. +....... .....+++++|++...++-...+- ..+++.+..|+..+.... ..++..+...++..++.++
T Consensus 225 ~~sh~-~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~ 301 (570)
T 3c5e_A 225 EHSYS-SLGLKAKM--DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSM 301 (570)
T ss_dssp EEEHH-HHHHHHHH--HTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEE
T ss_pred EechH-HHHhhhhh--hhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEE
Confidence 58888 44321111 124468899999988888665433 346788888988777653 6789999999999999999
Q ss_pred EEcCccccccc
Q 008946 137 FTISQLVPKLA 147 (548)
Q Consensus 137 i~~~~~~~~~~ 147 (548)
+........+.
T Consensus 302 ~~~P~~~~~l~ 312 (570)
T 3c5e_A 302 MGAPIVYRMLL 312 (570)
T ss_dssp EECHHHHHHHH
T ss_pred eccHHHHHHHH
Confidence 88877665543
No 61
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=42.64 E-value=59 Score=32.22 Aligned_cols=83 Identities=16% Similarity=0.126 Sum_probs=61.4
Q ss_pred eeeHHHHHHHHHHHHHHHHHCCC--CCCCEEEEECCCCCcH--HHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeE
Q 008946 60 HLTFSELWRAVDSVSTCLSDMGI--RKGHVILLLSPNSIFF--PVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVL 135 (548)
Q Consensus 60 ~~Ty~~l~~~~~~la~~L~~~g~--~~g~~V~i~~~~~~~~--~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 135 (548)
.+|++.+...+..++. ..++ .+++++...+|-...+ ...+++.+..|+..+..+ ..++..+...+++.++.+
T Consensus 172 ~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 247 (504)
T 1t5h_X 172 IIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE-EFRPVDALQLVQQEQVTS 247 (504)
T ss_dssp EEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCE
T ss_pred EecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHhCCeE
Confidence 5888888776655443 3466 7889988888765433 235788889999988765 478888999999999999
Q ss_pred EEEcCcccccc
Q 008946 136 AFTISQLVPKL 146 (548)
Q Consensus 136 vi~~~~~~~~~ 146 (548)
++.....+..+
T Consensus 248 ~~~~P~~~~~l 258 (504)
T 1t5h_X 248 LFATPTHLDAL 258 (504)
T ss_dssp EECCHHHHHHH
T ss_pred EEeChHHHHHH
Confidence 88877665544
No 62
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=40.93 E-value=87 Score=31.59 Aligned_cols=86 Identities=10% Similarity=-0.028 Sum_probs=61.8
Q ss_pred ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCc-HHHHHHHHHHcCCeEecCCCC--CCHHHHHHHHhhcCCeE
Q 008946 59 RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIF-FPVVCLAVMSLGAIITTTNPL--NTKQEIAKQIADSKPVL 135 (548)
Q Consensus 59 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~-~~v~~lA~~~~G~~~v~l~~~--~~~~~~~~~l~~~~~~~ 135 (548)
-.+|++.+...+...+ ...++.++|++...++-... .+..++..+..|+..+.++.. .+...+...++..++.+
T Consensus 200 V~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~ 276 (563)
T 1amu_A 200 TMLEHKGISNLKVFFE---NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITV 276 (563)
T ss_dssp EEEESHHHHHHHHHHH---HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCE
T ss_pred EEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcE
Confidence 3589988866554333 23588999999988876643 334567788889988776542 57788889999999999
Q ss_pred EEEcCccccccc
Q 008946 136 AFTISQLVPKLA 147 (548)
Q Consensus 136 vi~~~~~~~~~~ 147 (548)
+.........+.
T Consensus 277 ~~~~P~~~~~l~ 288 (563)
T 1amu_A 277 ITLPPTYVVHLD 288 (563)
T ss_dssp EEECHHHHTTSC
T ss_pred EEeCHHHHHHHH
Confidence 988776555443
No 63
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=36.53 E-value=1.1e+02 Score=21.32 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=33.1
Q ss_pred hHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCCCHHHHHHHHHhccCCCC
Q 008946 457 PAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYK 516 (548)
Q Consensus 457 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~ 516 (548)
..++++.|.+.|+|.+|..+.-+ ....+.+.. .+.+++.+.+.+++....
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~-----~D~ll~v~~-----~d~~~l~~~i~~~l~~~~ 64 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGE-----YDLIVKVET-----DTLKDLDQFITEKIRKMP 64 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSS-----CSEEEEEEE-----SSHHHHHHHHHTTGGGCT
T ss_pred HHHHHHHHhCCCCeeEEEEEccc-----CCEEEEEEE-----CCHHHHHHHHHHHhccCC
Confidence 47899999999999999887321 122333332 356778887876665544
No 64
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=35.30 E-value=1.6e+02 Score=29.07 Aligned_cols=83 Identities=10% Similarity=0.138 Sum_probs=60.3
Q ss_pred ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCc--HHHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEE
Q 008946 59 RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIF--FPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLA 136 (548)
Q Consensus 59 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~--~~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v 136 (548)
-.+|.+.+...+..++..+ ++.++|++...++-.-. ++..+++.+..|+..+.. +..+.+.+...+ ..++.++
T Consensus 173 V~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i-~~~~t~~ 247 (505)
T 3nyq_A 173 AVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL-GRFSTEGAAREL-NDGATML 247 (505)
T ss_dssp EEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC-SSCCHHHHHHHH-TTTCCEE
T ss_pred EEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC-CCCChHHHHHHH-hhCCeEE
Confidence 3589999988887766655 77899999888875432 233578888999998776 457777777777 5688888
Q ss_pred EEcCcccccc
Q 008946 137 FTISQLVPKL 146 (548)
Q Consensus 137 i~~~~~~~~~ 146 (548)
+........+
T Consensus 248 ~~~P~~~~~l 257 (505)
T 3nyq_A 248 FGVPTMYHRI 257 (505)
T ss_dssp EECHHHHHHH
T ss_pred EehHHHHHHH
Confidence 7776655433
No 65
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=35.22 E-value=2.1e+02 Score=24.42 Aligned_cols=91 Identities=23% Similarity=0.240 Sum_probs=55.0
Q ss_pred CeEEEEccch-HHHHhHHHHHHHHHHcCCEEEEcC-CCCHHHHHHHHhhccceEEec--c----hHH--HHHHHhCcccc
Q 008946 235 EQTFICTVPM-FHIYGLAAFATGLLASGSTIVVLS-KFDMHEMLSSISKYRATYLPL--V----PPI--LVALISGADQI 304 (548)
Q Consensus 235 ~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~--~----P~~--~~~l~~~~~~~ 304 (548)
..+++...+. .|-.|........-..|..++... ..+++++++.+.+++++.+.. + +++ +..+.+...+
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~- 171 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNE- 171 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHH-
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHH-
Confidence 3445544332 455566455445566787777654 578999999999999997666 2 221 3333333322
Q ss_pred cccCCCC-ccceeeecCCCCCHHHHHH
Q 008946 305 RSKYDLS-SLQSVLSGGAPLSREVIEG 330 (548)
Q Consensus 305 ~~~~~l~-~lr~v~~~G~~l~~~~~~~ 330 (548)
..+. ++ .+++||.+++++..+.
T Consensus 172 ---~~~~~~v-~v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 172 ---EKLRDSV-KCMFGGAPVSDKWIEE 194 (215)
T ss_dssp ---TTCGGGS-EEEEESSSCCHHHHHH
T ss_pred ---cCCCCCC-EEEEECCCCCHHHHHH
Confidence 1121 23 3788999999876544
No 66
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=34.56 E-value=57 Score=30.67 Aligned_cols=79 Identities=11% Similarity=0.054 Sum_probs=51.5
Q ss_pred eeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC-cHHHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEEEE
Q 008946 60 HLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSI-FFPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFT 138 (548)
Q Consensus 60 ~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~-~~~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~ 138 (548)
.+|++.+...+...+.. .+++++|++...+|-.. ..+..++..+..|+..+...+... ....++..++.++..
T Consensus 56 ~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~~ 129 (358)
T 4gs5_A 56 TVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN---PLAGLDHADFDFVAM 129 (358)
T ss_dssp EEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEEEE
T ss_pred EEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEEEc
Confidence 59999998777655544 47899999998888553 234445666777877766655432 233456666766666
Q ss_pred cCcccc
Q 008946 139 ISQLVP 144 (548)
Q Consensus 139 ~~~~~~ 144 (548)
....+.
T Consensus 130 ~P~~l~ 135 (358)
T 4gs5_A 130 VPMQLQ 135 (358)
T ss_dssp CHHHHH
T ss_pred ChHHHH
Confidence 554443
No 67
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=34.17 E-value=1.6e+02 Score=29.77 Aligned_cols=94 Identities=13% Similarity=0.171 Sum_probs=62.3
Q ss_pred CCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhcc---ccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEc
Q 008946 191 NQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRF---KLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVL 267 (548)
Q Consensus 191 ~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 267 (548)
.++.+|++..... |. ...+|.+.+......+...+ +..+++ ++...++-.. -+...+++++..|+..+..
T Consensus 69 ~pd~~Al~~~~~~--g~--~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd-~V~l~~~~~~--e~~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 69 SPEKLAMIWCDDY--GN--EKIFTFKDLKYYSDKAANFFVKHGIGKGD-YVMLTLKSRY--DFWYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp CTTCEEEEEEESS--SC--EEEEEHHHHHHHHHHHHHHHHHTTCCTTC-EEEEECTTCT--HHHHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEcCC--CC--EeEEeHHHHHHHHHHHHHHHHHcCCCCCC-EEEEEcCCCH--HHHHHHHHHHhCCEEEEeC
Confidence 5678888765321 11 23577887776666555444 344444 4444455433 2346677889999999987
Q ss_pred CC-CCHHHHHHHHhhccceEEecch
Q 008946 268 SK-FDMHEMLSSISKYRATYLPLVP 291 (548)
Q Consensus 268 ~~-~~~~~~~~~i~~~~~t~l~~~P 291 (548)
++ ...+++...++..++..++..+
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 142 THMLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp CTTCCHHHHHHHHHHHTCCEEEEES
T ss_pred CccCCHHHHHHHHHhcCCCEEEEec
Confidence 74 6788899999999999887654
No 68
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=33.97 E-value=1.4e+02 Score=29.08 Aligned_cols=105 Identities=13% Similarity=0.067 Sum_probs=68.6
Q ss_pred CCCCEEEEEcCC--CCCCcchhHhhhHHHHHHHHHHHhhccc--cCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEE
Q 008946 191 NQDDVATLLYSS--GTTGASKGVVSSHRNLIAMVQTVLGRFK--LEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVV 266 (548)
Q Consensus 191 ~~~~~~~i~~TS--GtTG~pK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 266 (548)
.++.+|++.... +.+| ....+|.+.+......+...+. +. .++++...++-.. .+...+++++..|+..+.
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGL--EYVVAFLGALQAGRIAVP 111 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSH--HHHHHHHHHHHTTCEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcH--HHHHHHHHHHHhCcEEEe
Confidence 467777776432 2233 2245788888776666655541 23 3445544455443 234667788999999998
Q ss_pred cCC----CCHHHHHHHHhhccceEEecchHHHHHHHhC
Q 008946 267 LSK----FDMHEMLSSISKYRATYLPLVPPILVALISG 300 (548)
Q Consensus 267 ~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 300 (548)
++. ...+++...++..++..++..+.....+.+.
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 764 3567888889999999999888776666543
No 69
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=33.40 E-value=1.1e+02 Score=30.84 Aligned_cols=84 Identities=18% Similarity=0.072 Sum_probs=61.6
Q ss_pred ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC-cHHHHHHHHHHcCCeEecCCC-CCCHHHHHHHHhhcCCeEE
Q 008946 59 RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSI-FFPVVCLAVMSLGAIITTTNP-LNTKQEIAKQIADSKPVLA 136 (548)
Q Consensus 59 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~-~~~v~~lA~~~~G~~~v~l~~-~~~~~~~~~~l~~~~~~~v 136 (548)
-.+|.+.+..... .....++.++|++...+|-+. .+...+++.+..|+..+.... ..+...+...+++.++.++
T Consensus 232 V~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~ 307 (570)
T 4gr5_A 232 VMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTML 307 (570)
T ss_dssp EEEEHHHHHHHHS----SCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEE
T ss_pred EEEecHHHHHHHH----hhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEE
Confidence 3589888754332 122357889999999988753 455667888899998777654 5688899999999999999
Q ss_pred EEcCcccccc
Q 008946 137 FTISQLVPKL 146 (548)
Q Consensus 137 i~~~~~~~~~ 146 (548)
.........+
T Consensus 308 ~~~P~~~~~l 317 (570)
T 4gr5_A 308 QLSASLFNFL 317 (570)
T ss_dssp EEEHHHHHHH
T ss_pred EecHHHHHHH
Confidence 8877665544
No 70
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=31.66 E-value=2.4e+02 Score=28.98 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=63.9
Q ss_pred CCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhccc---cCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEc
Q 008946 191 NQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFK---LEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVL 267 (548)
Q Consensus 191 ~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 267 (548)
.++.+|++.... ..|. ...+|.+.+......+...+. +...++++...+|...- +...+++++..|+..+.+
T Consensus 95 ~pd~~Al~~~~~-~~~~--~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e--~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPGQ--GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE--AIITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEECS-STTC--CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH--HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEcC-CCCc--eEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEee
Confidence 467777775432 1121 235788887766655554432 23445566666666543 346777889999998887
Q ss_pred C-CCCHHHHHHHHhhccceEEecch
Q 008946 268 S-KFDMHEMLSSISKYRATYLPLVP 291 (548)
Q Consensus 268 ~-~~~~~~~~~~i~~~~~t~l~~~P 291 (548)
. .+..+.+...+++.++.+++...
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~ 194 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTD 194 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEcc
Confidence 6 47889999999999999988754
No 71
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=31.25 E-value=1.4e+02 Score=29.55 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHHHHhhcc---ccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEcCC-CCHHHHHHHHhhccceEE
Q 008946 212 VSSHRNLIAMVQTVLGRF---KLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSK-FDMHEMLSSISKYRATYL 287 (548)
Q Consensus 212 ~~t~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l 287 (548)
.+|...+......+...+ +..+++ ++...++-.. .+...+++++..|+..+..+. ...+++...+++.++..+
T Consensus 48 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd-~V~i~~~n~~--~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 124 (529)
T 2v7b_A 48 STTYGELEERARRFASALRTLGVHPEE-RILLVMLDTV--ALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAV 124 (529)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTC-EEEEECCSST--HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEE
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCC-EEEEEcCCcH--HHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEE
Confidence 478888776666655444 333444 4444444433 233567788999999998774 678888899999999988
Q ss_pred ecchHHHH
Q 008946 288 PLVPPILV 295 (548)
Q Consensus 288 ~~~P~~~~ 295 (548)
+..+....
T Consensus 125 i~~~~~~~ 132 (529)
T 2v7b_A 125 IASGALVQ 132 (529)
T ss_dssp EEEGGGHH
T ss_pred Eechhhhh
Confidence 87765443
No 72
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=30.95 E-value=1.2e+02 Score=28.10 Aligned_cols=64 Identities=14% Similarity=-0.002 Sum_probs=43.1
Q ss_pred HHCC-CCCCCEEEEECCCCCcHHHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCc
Q 008946 78 SDMG-IRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQ 141 (548)
Q Consensus 78 ~~~g-~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~ 141 (548)
.+.| +++|++|.+....+=.-..+.++|...|.-++.+-|...+..-...++..++++++++..
T Consensus 63 ~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 63 EKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3445 488888644445566667777778888987665545544445566778899999988753
No 73
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=27.74 E-value=2e+02 Score=28.28 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHHHhhcc---ccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEcCC-CCHHHHHHHHhhccceEE
Q 008946 212 VSSHRNLIAMVQTVLGRF---KLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSK-FDMHEMLSSISKYRATYL 287 (548)
Q Consensus 212 ~~t~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l 287 (548)
.+|.+.+......+...+ +..++ +++...++-.. .+...+++.+..|+..+..++ ...+++...+++.++..+
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~g-d~V~i~~~~~~--~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~v 104 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVG-DRVAAQTEKSV--EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIV 104 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTT-CEEEEECCSCH--HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCC-CEEEEECCCCH--HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence 478888776666555444 33344 45444455443 234677788999999998874 678889999999999998
Q ss_pred ecchH
Q 008946 288 PLVPP 292 (548)
Q Consensus 288 ~~~P~ 292 (548)
+..+.
T Consensus 105 i~~~~ 109 (503)
T 4fuq_A 105 VCDPS 109 (503)
T ss_dssp EECGG
T ss_pred EECch
Confidence 87764
No 74
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=25.64 E-value=1.3e+02 Score=28.27 Aligned_cols=60 Identities=17% Similarity=0.035 Sum_probs=39.2
Q ss_pred HHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCCeEecCCC-----CCCHHHHHHHHhhcC--CeEEEEc
Q 008946 77 LSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNP-----LNTKQEIAKQIADSK--PVLAFTI 139 (548)
Q Consensus 77 L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~~v~l~~-----~~~~~~~~~~l~~~~--~~~vi~~ 139 (548)
|...++++||.|.+-.+.... ..-++...|+.++.++. ..+.+.+...+...+ +++|+..
T Consensus 70 l~~l~~~~Gd~Vi~~~~~~~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 70 IQLKKRKKGKYALMPSFTFPA---TPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHSCTTCCEEEEESSSCTH---HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHcCCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 444567899999887665444 34456778987665543 247888888774334 6777643
No 75
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=25.51 E-value=1.6e+02 Score=20.08 Aligned_cols=50 Identities=18% Similarity=0.100 Sum_probs=32.7
Q ss_pred hHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCCCHHHHHHHHHhccCCCC
Q 008946 457 PAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYK 516 (548)
Q Consensus 457 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~ 516 (548)
..++.+.|.++|+|.++..+.- +....+.+. ..+.+++.+.+.+++....
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG-----~~d~l~~v~-----~~d~~~l~~~~~~~l~~~~ 64 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYG-----VYDIVVKVE-----ADSMDKLKDFVTNTIRKLP 64 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSS-----SCSEEEEEE-----CSSHHHHHHHHHHTGGGST
T ss_pred HHHHHHHHhCCCCeEEEEEEec-----cCCEEEEEE-----ECCHHHHHHHHHHHhcCCC
Confidence 3789999999999999988732 112223333 2356778887776665543
No 76
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=25.25 E-value=2.6e+02 Score=30.38 Aligned_cols=93 Identities=9% Similarity=0.076 Sum_probs=62.9
Q ss_pred CCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhcc---ccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEc
Q 008946 191 NQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRF---KLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVL 267 (548)
Q Consensus 191 ~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 267 (548)
.++.++++...+| -.+|.+.+......+...+ +..++ +++...++-.. .+...+++.+..|+..+.+
T Consensus 74 ~pd~~Al~~~~~~-------~~~TY~eL~~~~~~lA~~L~~~Gv~~g-d~V~i~~~ns~--e~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 74 FATKPCLINGPTG-------HVYTYSDVHVISRQIAANFHKLGVNQN-DVVMLLLPNCP--EFVLSFLAASFRGATATAA 143 (979)
T ss_dssp TTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTT-CEEEEECSSCH--HHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECCCC-------cEEEHHHHHHHHHHHHHHHHHcCCCCc-CEEEEEeCCCH--HHHHHHHHHHHcCCEEEee
Confidence 4677887653333 2478888776666555444 33344 45544455443 3346777889999999987
Q ss_pred CC-CCHHHHHHHHhhccceEEecchHH
Q 008946 268 SK-FDMHEMLSSISKYRATYLPLVPPI 293 (548)
Q Consensus 268 ~~-~~~~~~~~~i~~~~~t~l~~~P~~ 293 (548)
++ ...+++...+++.++.+++..+..
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~ 170 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARY 170 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTT
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHH
Confidence 74 688899999999999998877654
No 77
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=24.75 E-value=1.5e+02 Score=27.70 Aligned_cols=69 Identities=14% Similarity=0.042 Sum_probs=47.6
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 008946 72 SVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTIS 140 (548)
Q Consensus 72 ~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~ 140 (548)
.+.+...+--+++|.+..+....+=.-..+.++|.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 73 ~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 73 MITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp HHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 344444333357887655666666677778888889998766655666556666778899999988764
No 78
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=24.18 E-value=1.2e+02 Score=31.10 Aligned_cols=96 Identities=15% Similarity=0.039 Sum_probs=66.3
Q ss_pred ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCc-HHHHHHHHHHcCCeEecCC-CCCCHHHHHHHHhhcCCeEE
Q 008946 59 RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIF-FPVVCLAVMSLGAIITTTN-PLNTKQEIAKQIADSKPVLA 136 (548)
Q Consensus 59 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~-~~v~~lA~~~~G~~~v~l~-~~~~~~~~~~~l~~~~~~~v 136 (548)
-.+|++.+...+. .....++.+++++....+-+.. .+..+|+.+..|+..+..+ ...++..+...++..++.++
T Consensus 182 V~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~ 257 (620)
T 4dg8_A 182 IACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSA 257 (620)
T ss_dssp EEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEE
T ss_pred EEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEE
Confidence 3589888754432 2233578999999999887643 3445788889998877763 35688999999999999998
Q ss_pred EEcCcccccccC------CCCcEEEecC
Q 008946 137 FTISQLVPKLAG------STLPIVLLDD 158 (548)
Q Consensus 137 i~~~~~~~~~~~------~~~~~~~~~~ 158 (548)
.........+.. ..++.+++..
T Consensus 258 ~~~Ps~~~~l~~~~~~~l~~lr~v~~gG 285 (620)
T 4dg8_A 258 WLTASLFNTLVDLDPDCLGGLRQLLTGG 285 (620)
T ss_dssp EEEHHHHHHHHHHCGGGGTTCSEEEEES
T ss_pred EccHHHHHHHHhcChhhCCCccEEEEEe
Confidence 887665543321 3455555544
No 79
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=24.01 E-value=1.6e+02 Score=20.83 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=32.0
Q ss_pred hHHHHHHHhcCCCcceeEEEeecCCCCCceeeEEEEecCCCCCCHHHHHHHHHhccCCCC
Q 008946 457 PAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYK 516 (548)
Q Consensus 457 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~ 516 (548)
..++.+.|.++|+|.+|..+.- .....+.+.. .+.+++.+.+.+++....
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG-----~~D~ll~v~~-----~d~~~l~~~l~~~l~~~~ 64 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTG-----PYDLVALVRL-----KDVEELDDVVTQGILSLE 64 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESS-----SSSEEEEEEE-----SSGGGHHHHCCCCCTTST
T ss_pred HHHHHHHHhcCCCeEEEEEeec-----CCCEEEEEEE-----CCHHHHHHHHHHhcccCC
Confidence 5788999999999999988832 1122333332 244667777766655443
No 80
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=23.97 E-value=1.8e+02 Score=29.03 Aligned_cols=86 Identities=10% Similarity=0.081 Sum_probs=62.6
Q ss_pred eeeHHHHHHHHHHHHHHHH-----HCCCCCCCEEEEECCCCCc-HHHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCC
Q 008946 60 HLTFSELWRAVDSVSTCLS-----DMGIRKGHVILLLSPNSIF-FPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKP 133 (548)
Q Consensus 60 ~~Ty~~l~~~~~~la~~L~-----~~g~~~g~~V~i~~~~~~~-~~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~ 133 (548)
.+|++.+...+..++..+. ...+...+++....+.... .+..++..+..|+..+........+.+...++..++
T Consensus 194 ~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~ 273 (562)
T 3ite_A 194 RVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGV 273 (562)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTC
T ss_pred EECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCC
Confidence 5899999988888777664 2456778888887776654 344467788889888765543345667788899999
Q ss_pred eEEEEcCccccc
Q 008946 134 VLAFTISQLVPK 145 (548)
Q Consensus 134 ~~vi~~~~~~~~ 145 (548)
.++......+..
T Consensus 274 t~~~~~P~~l~~ 285 (562)
T 3ite_A 274 THAGIVPSLLDQ 285 (562)
T ss_dssp CEEEECHHHHHH
T ss_pred CEEEcCHHHHhh
Confidence 999887765544
No 81
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=23.19 E-value=4.5e+02 Score=26.83 Aligned_cols=95 Identities=17% Similarity=0.121 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCCCCCCcchhHhhhHHHHHHHHHHHhhcc---ccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEc
Q 008946 191 NQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRF---KLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVL 267 (548)
Q Consensus 191 ~~~~~~~i~~TSGtTG~pK~v~~t~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 267 (548)
.++.+|++.... .+|. .-.+|.+.+......+...+ +..++ +++...+|...- +...+++++..|+..+.+
T Consensus 89 ~pd~~Al~~~~~-~~~~--~~~lTY~eL~~~v~~lA~~L~~~Gv~~G-d~V~i~~~~~~e--~vva~lA~~~~Gav~vpl 162 (652)
T 1pg4_A 89 NGDRTAIIWEGD-DTSQ--SKHISYRELHRDVCRFANTLLDLGIKKG-DVVAIYMPMVPE--AAVAMLACARIGAVHSVI 162 (652)
T ss_dssp HTTSEEEEEECS-STTC--EEEEEHHHHHHHHHHHHHHHHHHTCCTT-CEEEEECCSSHH--HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC-CCCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCC-CEEEEEeCCCHH--HHHHHHHHHHcCcEEEec
Confidence 356777765422 1221 13578888876666655444 33344 455545555442 336677889999999887
Q ss_pred C-CCCHHHHHHHHhhccceEEecch
Q 008946 268 S-KFDMHEMLSSISKYRATYLPLVP 291 (548)
Q Consensus 268 ~-~~~~~~~~~~i~~~~~t~l~~~P 291 (548)
+ .+..+.+...+++.++.+++...
T Consensus 163 ~~~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 163 FGGFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 6 47889999999999998877643
No 82
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=23.02 E-value=2.7e+02 Score=25.65 Aligned_cols=60 Identities=15% Similarity=0.283 Sum_probs=32.9
Q ss_pred CCCCCCEEEEECCCCCc------HHHHHHH-HHHcCCeEecCCCCC--------C----HHHHHHHHhhcCCeEEEEcC
Q 008946 81 GIRKGHVILLLSPNSIF------FPVVCLA-VMSLGAIITTTNPLN--------T----KQEIAKQIADSKPVLAFTIS 140 (548)
Q Consensus 81 g~~~g~~V~i~~~~~~~------~~v~~lA-~~~~G~~~v~l~~~~--------~----~~~~~~~l~~~~~~~vi~~~ 140 (548)
.+++||+|+|+.|.+.- -+-.... +-..|..++.-.... + ++++...+.+-+.+.|+|..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 47899999999997631 1211222 223466665433211 1 33444455556677777764
No 83
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=22.52 E-value=1.3e+02 Score=20.79 Aligned_cols=45 Identities=7% Similarity=-0.015 Sum_probs=29.8
Q ss_pred ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCC
Q 008946 59 RHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGA 110 (548)
Q Consensus 59 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~ 110 (548)
..+.+.++.+ .+.+.+..++..|.++|..+.....+...+...|.
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 4566666644 33344567788888888887766666666666664
No 84
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=22.36 E-value=2e+02 Score=26.53 Aligned_cols=76 Identities=9% Similarity=0.067 Sum_probs=46.1
Q ss_pred eeeHHHHHHHHHHH--H-HHHHHCCCCCCCEEEEECCCCCcHHHHHHHHHHcCCeEecCCCCCCHHHHHHHHhhcCCeEE
Q 008946 60 HLTFSELWRAVDSV--S-TCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLA 136 (548)
Q Consensus 60 ~~Ty~~l~~~~~~l--a-~~L~~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v 136 (548)
.+++.+...-.... | +.++..++++|++|+|+..-+.-.++++++....|+.++.++. +.++ ..+++..++..+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeEE
Confidence 46666654332222 2 3345568999999999987666666666666666666555432 3444 345556676665
Q ss_pred EE
Q 008946 137 FT 138 (548)
Q Consensus 137 i~ 138 (548)
+.
T Consensus 213 i~ 214 (348)
T 4eez_A 213 IN 214 (348)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 85
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=22.18 E-value=3.9e+02 Score=23.25 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=43.4
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCc-HHHH-HH----HHHHcCCe-EecCCCCCCHHHH---HHHHhhcCCeEEEEcCccc
Q 008946 74 STCLSDMGIRKGHVILLLSPNSIF-FPVV-CL----AVMSLGAI-ITTTNPLNTKQEI---AKQIADSKPVLAFTISQLV 143 (548)
Q Consensus 74 a~~L~~~g~~~g~~V~i~~~~~~~-~~v~-~l----A~~~~G~~-~v~l~~~~~~~~~---~~~l~~~~~~~vi~~~~~~ 143 (548)
|+.|+. ++...|+++.++... |+.. .- ++...|.. .+..+...+.+.. ...+...+++.+|......
T Consensus 2 Ar~L~~---~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 78 (277)
T 3hs3_A 2 SLTLYQ---KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSAFTI 78 (277)
T ss_dssp ---------CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCCC
T ss_pred chhhhc---CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcchHH
Confidence 455544 456789998886432 2222 22 24556877 6666665555433 3334455777666655444
Q ss_pred ccccCCCCcEEEecC
Q 008946 144 PKLAGSTLPIVLLDD 158 (548)
Q Consensus 144 ~~~~~~~~~~~~~~~ 158 (548)
+.+...+++++.++.
T Consensus 79 ~~~~~~~iPvV~~~~ 93 (277)
T 3hs3_A 79 PPNFHLNTPLVMYDS 93 (277)
T ss_dssp CTTCCCSSCEEEESC
T ss_pred HHHHhCCCCEEEEcc
Confidence 445456777776654
No 86
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=20.45 E-value=3.1e+02 Score=25.33 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=33.2
Q ss_pred CCCCCCEEEEECCCCCcH------HHHHHHHH-HcCCeEecCCCC---------CC---HHHHHHHHhhcCCeEEEEcC
Q 008946 81 GIRKGHVILLLSPNSIFF------PVVCLAVM-SLGAIITTTNPL---------NT---KQEIAKQIADSKPVLAFTIS 140 (548)
Q Consensus 81 g~~~g~~V~i~~~~~~~~------~v~~lA~~-~~G~~~v~l~~~---------~~---~~~~~~~l~~~~~~~vi~~~ 140 (548)
.+++||+|+|+.|.+.-. +-.....+ ..|..++.-... .+ .+++...+.+-+++.|+|..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 478999999999987522 22222222 357766643321 11 23444444555667777764
No 87
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=20.39 E-value=3.4e+02 Score=25.34 Aligned_cols=59 Identities=15% Similarity=0.066 Sum_probs=38.7
Q ss_pred HCCCCCCCEEEEECCCCCcHHHHHHHHHHcCCeEecCCC----CCCHHHHHHHHhhc--CCeEEEEcC
Q 008946 79 DMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNP----LNTKQEIAKQIADS--KPVLAFTIS 140 (548)
Q Consensus 79 ~~g~~~g~~V~i~~~~~~~~~v~~lA~~~~G~~~v~l~~----~~~~~~~~~~l~~~--~~~~vi~~~ 140 (548)
..++++||.|.+..+....+.. ++...|+.++.++. ..+.+.+...++.. ++++|+...
T Consensus 66 ~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 66 VAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 3356899999888776655543 34457877665543 24678888888754 567776654
No 88
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=20.19 E-value=2.7e+02 Score=25.82 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=33.6
Q ss_pred CCCCCCEEEEECCCCCc------HHHHHHHHH-HcCCeEecCCC---------CCC---HHHHHHHHhhcCCeEEEEcCc
Q 008946 81 GIRKGHVILLLSPNSIF------FPVVCLAVM-SLGAIITTTNP---------LNT---KQEIAKQIADSKPVLAFTISQ 141 (548)
Q Consensus 81 g~~~g~~V~i~~~~~~~------~~v~~lA~~-~~G~~~v~l~~---------~~~---~~~~~~~l~~~~~~~vi~~~~ 141 (548)
.+++||+|+|+.|.+.- -+-.....+ ..|..++.-.. +.+ .+++...+.+-+++.|+|...
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 47899999999998742 122222223 35776664321 111 234444445556677777643
No 89
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=20.08 E-value=2.9e+02 Score=27.10 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHHhhcc---ccCCCCeEEEEccchHHHHhHHHHHHHHHHcCCEEEEcC-CCCHHHHHHHHhhccceEE
Q 008946 212 VSSHRNLIAMVQTVLGRF---KLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLS-KFDMHEMLSSISKYRATYL 287 (548)
Q Consensus 212 ~~t~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l 287 (548)
.+|.+.+......+...+ +..+++.+.+. .+-.. .+...+++++..|+..+..+ ....+++...++..++..+
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~-~~n~~--~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~i 105 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVF-GAQTY--DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLI 105 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEE-ECSSH--HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEE
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE-eCCCH--HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEE
Confidence 367888776666555444 34445545443 44332 23366778899999988776 4678889999999999888
Q ss_pred ecch
Q 008946 288 PLVP 291 (548)
Q Consensus 288 ~~~P 291 (548)
+...
T Consensus 106 i~~~ 109 (521)
T 3l8c_A 106 IAIE 109 (521)
T ss_dssp EESS
T ss_pred EecC
Confidence 7643
Done!