BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008948
(548 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/54 (62%), Positives = 48/54 (88%)
Query: 4 QIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 57
+II+LSASANKLS I+++A+EY ALIMEELDP +LG I +++LE LLLQ+P+++
Sbjct: 122 EIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLLQSPSEA 175
>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of
Gp91(Phox)
Length = 186
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 443 VLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDI 481
+ +DGP+G ++D YEVV+LVG GIG TP SI+K +
Sbjct: 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSV 39
>pdb|3ENB|A Chain A, Crystal Structure Of Prp8 Core Domain Iv
pdb|3ENB|B Chain B, Crystal Structure Of Prp8 Core Domain Iv
Length = 222
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 1 MYLQIISLS--ASANKLSNIQK--QAEEYAALIME---ELDPDHLGCI---MIDNLEMLL 50
++L+II S A +L + K AEE AALI E P + M+D LE+ L
Sbjct: 49 LFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHL 108
Query: 51 LQAPAQSVKGGESRNLSHMLSQKLKPTQFDNPIRRCCDSTM--YFLLDNWQR 100
L P +KG E L LK +F + I + + M + L D+W +
Sbjct: 109 LDFPNIVIKGSE---LQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLK 157
>pdb|3E9L|A Chain A, Crystal Structure Of Human Prp8, Residues 1755-2016
Length = 257
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 1 MYLQIISLS--ASANKLSNIQK--QAEEYAALIME---ELDPDHLGCI---MIDNLEMLL 50
++L+II S A +L + K AEE AALI E P + M+D LE+ L
Sbjct: 58 LFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHL 117
Query: 51 LQAPAQSVKGGESRNLSHMLSQKLKPTQFDNPIRRCCDSTM--YFLLDNW 98
L P +KG E L LK +F + I + + M + L D+W
Sbjct: 118 LDFPNIVIKGSE---LQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDW 164
>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
pdb|1CQX|B Chain B, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
Length = 403
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 365 YKSGQY--MFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEVCRPP 422
++ GQY + ++ A+ + +S++ P+ + ++ G + P
Sbjct: 185 FEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRTYRISVKREGGGPQ------------P 232
Query: 423 PNGISGLLRAEGHNNPDF-PRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVK 479
P +S LL H++ + +V + PYG+ D ++L+ G+G TPM+S++K
Sbjct: 233 PGYVSNLL----HDHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLK 286
>pdb|3OZU|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Miconazole
pdb|3OZV|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZV|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZW|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
pdb|3OZW|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
Length = 403
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 365 YKSGQY--MFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEVCRPP 422
++ GQY + ++ A+ + +S++ P+ + ++ G + P
Sbjct: 185 FEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRSYRISVKREGGGPQ------------P 232
Query: 423 PNGISGLLRAEGHNNPDF-PRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVK 479
P +S LL H++ + +V + PYG+ D ++L+ G+G TPM+S++K
Sbjct: 233 PGYVSNLL----HDHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLK 286
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
Length = 369
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 6 ISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNL---EMLLLQAPAQSVKGGE 62
+SL+ + +QK+AE YA ME L D++G + ++ E LL A V
Sbjct: 210 LSLAPAPGASEALQKKAEAYALRAMEAL--DYVGVLALEFFQVGEELLFNEMAPRV---- 263
Query: 63 SRNLSHMLSQKLKPTQFDNPIR 84
N H + + +QF+N +R
Sbjct: 264 -HNSGHWTIEGAETSQFENHLR 284
>pdb|3VO2|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Iii
pdb|3VO2|B Chain B, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Iii
Length = 310
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 11/36 (30%)
Query: 216 KYEPMEPYFG-----------DQPKNYWHFVKSVEG 240
KY+P EPY G D P WH V S EG
Sbjct: 27 KYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEG 62
>pdb|3RPK|A Chain A, Structure Of The Full-Length Major Pilin Rrgb From
Streptococcus Pneumoniae
pdb|3RPK|B Chain B, Structure Of The Full-Length Major Pilin Rrgb From
Streptococcus Pneumoniae
Length = 603
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 433 EGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLV 465
+G NPD PRV D P D EYE+V +
Sbjct: 171 KGKANPDTPRVDKDTPVNHQVGDVVEYEIVTKI 203
>pdb|2X9Y|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
Length = 444
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 433 EGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLV 465
+G NPD PRV D P D EYE+V +
Sbjct: 13 KGKANPDTPRVDKDTPVNHQVGDVVEYEIVTKI 45
>pdb|2X9W|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
pdb|2X9X|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
Length = 444
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 433 EGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLV 465
+G NPD PRV D P D EYE+V +
Sbjct: 13 KGKANPDTPRVDKDTPVNHQVGDVVEYEIVTKI 45
>pdb|2Y1V|A Chain A, Full Length Structure Of Rrgb Pilus Protein From
Streptococcus Pneumoniae
pdb|2Y1V|B Chain B, Full Length Structure Of Rrgb Pilus Protein From
Streptococcus Pneumoniae
pdb|2Y1V|C Chain C, Full Length Structure Of Rrgb Pilus Protein From
Streptococcus Pneumoniae
Length = 605
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 433 EGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLV 465
+G NPD PRV D P D EYE+V +
Sbjct: 168 KGKANPDTPRVDKDTPVNHQVGDVVEYEIVTKI 200
>pdb|2X9Z|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
Length = 262
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 433 EGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLV 465
+G NPD PRV D P D EYE+V +
Sbjct: 10 KGKANPDTPRVDKDTPVNHQVGDVVEYEIVTKI 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,932,118
Number of Sequences: 62578
Number of extensions: 565312
Number of successful extensions: 1344
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1333
Number of HSP's gapped (non-prelim): 15
length of query: 548
length of database: 14,973,337
effective HSP length: 104
effective length of query: 444
effective length of database: 8,465,225
effective search space: 3758559900
effective search space used: 3758559900
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)